Query 016133
Match_columns 394
No_of_seqs 467 out of 2466
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0352 ATP-dependent DNA heli 100.0 3.5E-72 7.6E-77 525.0 22.6 378 2-382 98-493 (641)
2 COG0514 RecQ Superfamily II DN 100.0 1.9E-68 4E-73 533.3 31.7 310 2-328 94-403 (590)
3 KOG0351 ATP-dependent DNA heli 100.0 3.1E-63 6.6E-68 521.2 27.3 342 2-351 341-687 (941)
4 PLN03137 ATP-dependent DNA hel 100.0 4.6E-62 9.9E-67 512.5 34.3 324 3-328 538-870 (1195)
5 PRK11057 ATP-dependent DNA hel 100.0 1.5E-56 3.2E-61 464.5 35.3 305 4-328 104-408 (607)
6 TIGR00614 recQ_fam ATP-depende 100.0 3.6E-56 7.9E-61 450.0 35.5 307 3-325 89-402 (470)
7 TIGR01389 recQ ATP-dependent D 100.0 7.2E-56 1.6E-60 459.9 35.9 306 3-327 91-396 (591)
8 KOG0353 ATP-dependent DNA heli 100.0 1.5E-57 3.2E-62 421.4 18.0 311 3-328 172-529 (695)
9 KOG0331 ATP-dependent RNA heli 100.0 1.2E-39 2.5E-44 320.9 24.1 230 28-264 220-460 (519)
10 COG0513 SrmB Superfamily II DN 100.0 2.7E-37 5.8E-42 314.1 26.7 230 28-264 155-393 (513)
11 KOG0333 U5 snRNP-like RNA heli 100.0 6.3E-37 1.4E-41 294.3 22.3 225 27-256 376-628 (673)
12 PTZ00110 helicase; Provisional 100.0 3.4E-36 7.3E-41 308.6 29.0 230 28-263 258-495 (545)
13 PRK04837 ATP-dependent RNA hel 100.0 7.8E-37 1.7E-41 305.7 23.2 227 28-262 138-372 (423)
14 KOG0330 ATP-dependent RNA heli 100.0 4.7E-37 1E-41 286.2 18.9 232 27-267 183-422 (476)
15 PRK11776 ATP-dependent RNA hel 100.0 2.4E-36 5.3E-41 305.3 25.3 229 27-263 127-360 (460)
16 KOG0328 Predicted ATP-dependen 100.0 1.7E-36 3.7E-41 271.8 19.2 230 27-263 149-384 (400)
17 PRK10590 ATP-dependent RNA hel 100.0 6.7E-36 1.5E-40 301.4 25.5 228 28-263 130-363 (456)
18 PRK11192 ATP-dependent RNA hel 100.0 1.7E-35 3.6E-40 297.2 27.1 229 28-261 128-361 (434)
19 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-35 3.6E-40 302.4 25.3 229 27-263 250-486 (518)
20 PRK04537 ATP-dependent RNA hel 100.0 2E-35 4.3E-40 304.1 25.3 230 28-263 139-375 (572)
21 PRK01297 ATP-dependent RNA hel 100.0 3.8E-35 8.3E-40 297.5 25.9 235 18-263 214-453 (475)
22 PRK11634 ATP-dependent RNA hel 100.0 1.4E-34 3E-39 299.7 28.6 230 27-264 129-364 (629)
23 KOG0336 ATP-dependent RNA heli 100.0 3.2E-35 7E-40 275.1 20.1 246 2-263 331-583 (629)
24 PTZ00424 helicase 45; Provisio 100.0 1.1E-34 2.4E-39 288.3 25.2 234 18-263 147-385 (401)
25 KOG0338 ATP-dependent RNA heli 100.0 3.4E-35 7.4E-40 281.5 18.2 233 24-264 302-545 (691)
26 KOG0342 ATP-dependent RNA heli 100.0 1.1E-33 2.4E-38 270.7 24.5 227 28-262 210-447 (543)
27 KOG0326 ATP-dependent RNA heli 100.0 8.1E-34 1.8E-38 258.4 16.8 230 27-266 207-443 (459)
28 KOG0345 ATP-dependent RNA heli 100.0 2.4E-33 5.3E-38 266.8 20.1 227 27-263 135-375 (567)
29 KOG0343 RNA Helicase [RNA proc 100.0 5.8E-33 1.3E-37 268.3 22.7 226 28-263 195-434 (758)
30 KOG0335 ATP-dependent RNA heli 100.0 1.3E-32 2.9E-37 267.0 19.4 229 28-260 207-452 (482)
31 TIGR03817 DECH_helic helicase/ 100.0 3.5E-32 7.5E-37 287.0 22.6 236 18-258 130-394 (742)
32 KOG0341 DEAD-box protein abstr 100.0 4.2E-33 9E-38 259.4 12.4 229 8-253 296-529 (610)
33 KOG0340 ATP-dependent RNA heli 100.0 3.6E-32 7.9E-37 250.9 18.2 234 27-267 129-376 (442)
34 KOG0347 RNA helicase [RNA proc 100.0 5.2E-32 1.1E-36 261.7 16.1 246 19-267 308-585 (731)
35 KOG0332 ATP-dependent RNA heli 100.0 9.1E-31 2E-35 243.0 19.8 233 27-264 211-456 (477)
36 KOG0339 ATP-dependent RNA heli 100.0 5.2E-30 1.1E-34 245.8 21.2 237 23-265 345-588 (731)
37 KOG0346 RNA helicase [RNA proc 100.0 3E-30 6.5E-35 243.9 18.1 235 20-263 141-424 (569)
38 TIGR00580 mfd transcription-re 100.0 8.5E-29 1.9E-33 264.2 27.7 225 3-252 542-770 (926)
39 KOG0348 ATP-dependent RNA heli 100.0 2.2E-29 4.8E-34 242.9 19.5 243 8-263 256-565 (708)
40 KOG4284 DEAD box protein [Tran 100.0 4.5E-29 9.7E-34 245.0 18.3 228 27-260 147-388 (980)
41 PRK10917 ATP-dependent DNA hel 100.0 4E-28 8.6E-33 254.9 26.9 225 2-250 351-587 (681)
42 PRK10689 transcription-repair 100.0 5.1E-28 1.1E-32 263.3 28.3 236 2-262 690-935 (1147)
43 KOG0327 Translation initiation 100.0 1.1E-28 2.5E-33 230.6 18.5 236 19-263 140-381 (397)
44 TIGR00643 recG ATP-dependent D 100.0 1.3E-27 2.9E-32 249.3 26.3 224 2-249 325-563 (630)
45 KOG0344 ATP-dependent RNA heli 100.0 1.5E-28 3.3E-33 240.5 17.4 232 28-263 267-506 (593)
46 PRK13767 ATP-dependent helicas 100.0 7.1E-28 1.5E-32 258.9 23.6 199 43-249 170-395 (876)
47 PRK09751 putative ATP-dependen 100.0 1.4E-27 3E-32 261.7 23.8 218 19-248 101-381 (1490)
48 PRK02362 ski2-like helicase; P 100.0 2.1E-26 4.7E-31 244.7 27.0 221 27-253 117-398 (737)
49 PRK14701 reverse gyrase; Provi 100.0 3.2E-27 6.9E-32 262.8 20.2 242 3-263 166-467 (1638)
50 KOG0350 DEAD-box ATP-dependent 99.9 7.7E-28 1.7E-32 230.8 12.4 235 28-266 275-554 (620)
51 KOG0334 RNA helicase [RNA proc 99.9 3.7E-27 7.9E-32 243.9 16.9 244 6-264 480-732 (997)
52 TIGR01587 cas3_core CRISPR-ass 99.9 1.4E-26 3.1E-31 226.8 18.6 199 46-252 125-336 (358)
53 COG1201 Lhr Lhr-like helicases 99.9 1.2E-25 2.6E-30 233.3 22.1 221 18-251 124-361 (814)
54 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.4E-25 7.3E-30 234.4 23.8 222 27-258 94-342 (819)
55 PHA02653 RNA helicase NPH-II; 99.9 5.3E-25 1.1E-29 228.0 23.3 206 42-259 288-521 (675)
56 PRK00254 ski2-like helicase; P 99.9 9.2E-25 2E-29 231.7 25.7 222 28-261 119-398 (720)
57 PRK01172 ski2-like helicase; P 99.9 2.1E-24 4.5E-29 227.8 26.3 228 27-262 115-389 (674)
58 PRK11664 ATP-dependent RNA hel 99.9 6.1E-25 1.3E-29 232.8 21.1 218 27-256 97-343 (812)
59 COG1202 Superfamily II helicas 99.9 7.6E-25 1.6E-29 213.3 19.6 226 16-252 314-553 (830)
60 PRK11131 ATP-dependent RNA hel 99.9 8.8E-25 1.9E-29 236.1 21.7 220 27-257 167-416 (1294)
61 TIGR03158 cas3_cyano CRISPR-as 99.9 5.5E-24 1.2E-28 207.9 22.1 185 44-237 144-357 (357)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.4E-24 5.3E-29 224.7 20.6 194 43-250 169-389 (844)
63 PRK04914 ATP-dependent helicas 99.9 1.8E-23 3.9E-28 222.8 26.3 120 132-251 480-602 (956)
64 COG1111 MPH1 ERCC4-like helica 99.9 4.3E-23 9.4E-28 199.6 25.9 113 142-255 363-484 (542)
65 KOG0337 ATP-dependent RNA heli 99.9 3.8E-25 8.3E-30 208.5 9.9 233 20-260 136-376 (529)
66 PRK09401 reverse gyrase; Revie 99.9 1.2E-23 2.7E-28 229.7 20.7 213 3-237 167-429 (1176)
67 TIGR01967 DEAH_box_HrpA ATP-de 99.9 4.8E-23 1E-27 223.4 20.9 219 27-257 160-409 (1283)
68 PHA02558 uvsW UvsW helicase; P 99.9 7.2E-23 1.6E-27 208.7 19.3 109 144-252 343-452 (501)
69 TIGR00595 priA primosomal prot 99.9 1.6E-22 3.5E-27 205.1 21.1 233 2-254 63-383 (505)
70 PRK13766 Hef nuclease; Provisi 99.9 1.5E-21 3.4E-26 209.3 26.0 111 143-254 363-481 (773)
71 PRK12898 secA preprotein trans 99.9 1.1E-21 2.4E-26 200.7 22.8 168 82-255 410-589 (656)
72 COG1200 RecG RecG-like helicas 99.9 3.6E-21 7.9E-26 193.4 25.6 228 2-253 352-592 (677)
73 PRK05580 primosome assembly pr 99.9 1.5E-20 3.3E-25 197.2 24.6 242 2-261 228-558 (679)
74 COG1197 Mfd Transcription-repa 99.9 1.1E-20 2.3E-25 199.6 22.9 226 2-252 684-913 (1139)
75 TIGR00603 rad25 DNA repair hel 99.9 1.1E-20 2.5E-25 195.5 22.6 220 18-254 344-609 (732)
76 PRK09200 preprotein translocas 99.9 1.7E-20 3.7E-25 195.9 20.5 167 82-254 365-543 (790)
77 TIGR01054 rgy reverse gyrase. 99.9 2.8E-20 6.1E-25 203.7 21.7 199 4-224 167-409 (1171)
78 COG1204 Superfamily II helicas 99.8 3.6E-20 7.8E-25 194.6 18.5 218 18-249 123-405 (766)
79 TIGR00631 uvrb excinuclease AB 99.8 4.3E-20 9.3E-25 191.9 18.2 118 144-262 441-563 (655)
80 COG1205 Distinct helicase fami 99.8 6E-20 1.3E-24 195.4 18.4 239 10-252 162-422 (851)
81 TIGR03714 secA2 accessory Sec 99.8 3E-19 6.4E-24 185.1 21.8 166 82-255 361-540 (762)
82 KOG0349 Putative DEAD-box RNA 99.8 5E-20 1.1E-24 174.5 13.9 220 27-251 343-614 (725)
83 KOG0329 ATP-dependent RNA heli 99.8 3.6E-21 7.9E-26 171.1 5.7 192 21-254 158-357 (387)
84 PRK05298 excinuclease ABC subu 99.8 3.3E-19 7.1E-24 186.4 19.9 110 144-254 445-559 (652)
85 TIGR00963 secA preprotein tran 99.8 9.7E-19 2.1E-23 180.3 21.8 168 82-255 342-520 (745)
86 PRK12906 secA preprotein trans 99.8 7.4E-19 1.6E-23 182.6 20.1 167 82-254 377-555 (796)
87 cd00079 HELICc Helicase superf 99.8 5E-19 1.1E-23 147.3 14.9 118 131-248 12-131 (131)
88 PRK09694 helicase Cas3; Provis 99.8 1.2E-18 2.5E-23 185.1 21.1 186 47-241 441-664 (878)
89 KOG0354 DEAD-box like helicase 99.8 5E-19 1.1E-23 180.4 16.6 109 143-253 411-530 (746)
90 KOG0952 DNA/RNA helicase MER3/ 99.8 3.6E-18 7.8E-23 176.6 20.7 241 18-266 212-505 (1230)
91 PRK12900 secA preprotein trans 99.8 2E-17 4.4E-22 173.2 24.5 168 82-255 535-714 (1025)
92 COG1061 SSL2 DNA or RNA helica 99.8 1.2E-17 2.6E-22 167.4 21.5 197 44-249 145-388 (442)
93 PF00271 Helicase_C: Helicase 99.8 6.2E-19 1.3E-23 134.0 9.1 78 163-240 1-78 (78)
94 COG4098 comFA Superfamily II D 99.8 8.9E-17 1.9E-21 148.9 22.3 218 24-252 186-415 (441)
95 COG1643 HrpA HrpA-like helicas 99.8 1.9E-17 4.1E-22 173.8 17.4 221 27-255 143-390 (845)
96 KOG0951 RNA helicase BRR2, DEA 99.7 4E-17 8.7E-22 171.0 18.1 242 18-266 412-716 (1674)
97 KOG0922 DEAH-box RNA helicase 99.7 6.4E-17 1.4E-21 161.6 17.3 219 29-257 146-395 (674)
98 KOG0950 DNA polymerase theta/e 99.7 8.3E-17 1.8E-21 165.8 18.0 240 18-266 316-625 (1008)
99 KOG0947 Cytoplasmic exosomal R 99.7 1.5E-16 3.3E-21 163.1 17.5 127 136-263 558-736 (1248)
100 PLN03142 Probable chromatin-re 99.7 1.1E-15 2.4E-20 164.2 24.2 106 144-249 486-594 (1033)
101 KOG0948 Nuclear exosomal RNA h 99.7 1.8E-16 3.9E-21 159.1 15.0 216 44-263 234-551 (1041)
102 PRK11448 hsdR type I restricti 99.7 4.9E-16 1.1E-20 169.5 19.8 107 142-250 695-813 (1123)
103 COG1198 PriA Primosomal protei 99.7 3.3E-15 7.3E-20 154.8 20.5 245 2-263 283-614 (730)
104 COG0556 UvrB Helicase subunit 99.7 2E-15 4.4E-20 147.2 17.6 196 48-251 334-556 (663)
105 smart00490 HELICc helicase sup 99.7 5.1E-16 1.1E-20 118.2 9.3 81 160-240 2-82 (82)
106 COG1203 CRISPR-associated heli 99.6 3.4E-15 7.3E-20 158.4 16.1 199 46-251 339-549 (733)
107 KOG0923 mRNA splicing factor A 99.6 9.8E-15 2.1E-19 145.1 16.0 214 27-251 359-605 (902)
108 PRK12904 preprotein translocas 99.6 7.6E-14 1.7E-18 146.1 23.1 166 82-254 367-575 (830)
109 KOG4150 Predicted ATP-dependen 99.6 1.1E-14 2.3E-19 142.6 13.8 237 18-257 385-647 (1034)
110 COG4581 Superfamily II RNA hel 99.6 4.4E-14 9.6E-19 149.8 19.3 202 42-250 226-535 (1041)
111 KOG0926 DEAH-box RNA helicase 99.6 7.6E-15 1.6E-19 148.4 12.8 224 27-252 353-704 (1172)
112 PRK13107 preprotein translocas 99.6 3.2E-13 7E-18 141.4 24.5 167 82-254 386-593 (908)
113 PRK13104 secA preprotein trans 99.6 2E-13 4.4E-18 143.2 20.6 167 82-254 381-589 (896)
114 KOG0924 mRNA splicing factor A 99.6 1.2E-14 2.5E-19 144.9 10.3 216 27-252 449-697 (1042)
115 KOG0920 ATP-dependent RNA heli 99.5 2.5E-13 5.3E-18 142.7 14.6 221 27-255 268-547 (924)
116 COG1110 Reverse gyrase [DNA re 99.5 2.7E-12 5.9E-17 133.7 18.1 201 2-223 168-416 (1187)
117 KOG0385 Chromatin remodeling c 99.4 1.6E-11 3.5E-16 124.4 19.0 234 2-249 253-594 (971)
118 KOG0953 Mitochondrial RNA heli 99.4 3.2E-11 6.9E-16 118.5 19.0 125 137-264 349-488 (700)
119 KOG0925 mRNA splicing factor A 99.3 8.6E-11 1.9E-15 113.8 18.9 209 29-252 142-387 (699)
120 KOG0949 Predicted helicase, DE 99.3 1.5E-10 3.3E-15 119.9 17.6 89 172-262 965-1056(1330)
121 PRK12903 secA preprotein trans 99.3 3.2E-10 7E-15 118.2 19.6 165 82-254 363-541 (925)
122 TIGR00348 hsdR type I site-spe 99.2 2.1E-09 4.5E-14 113.4 23.5 93 145-238 514-633 (667)
123 COG4096 HsdR Type I site-speci 99.2 6.1E-11 1.3E-15 121.9 10.8 103 135-239 412-525 (875)
124 PRK12326 preprotein translocas 99.2 3.8E-09 8.1E-14 108.9 23.1 166 82-255 364-550 (764)
125 PRK14873 primosome assembly pr 99.2 2.9E-09 6.3E-14 111.2 22.6 235 2-262 227-548 (665)
126 KOG0384 Chromodomain-helicase 99.1 1.1E-09 2.3E-14 116.2 16.3 109 144-252 698-811 (1373)
127 PRK12901 secA preprotein trans 99.1 1.4E-08 3.1E-13 107.6 24.2 166 82-254 565-743 (1112)
128 PRK12899 secA preprotein trans 99.1 5.6E-09 1.2E-13 110.3 19.9 166 82-254 505-683 (970)
129 KOG0390 DNA repair protein, SN 99.1 6.3E-09 1.4E-13 108.2 18.8 99 150-248 599-701 (776)
130 KOG0389 SNF2 family DNA-depend 99.0 3E-09 6.5E-14 108.5 14.4 111 144-254 776-890 (941)
131 KOG0387 Transcription-coupled 99.0 8.2E-09 1.8E-13 105.5 17.3 117 132-248 531-652 (923)
132 PRK13103 secA preprotein trans 99.0 1.2E-08 2.6E-13 107.6 18.1 165 82-254 386-593 (913)
133 TIGR02562 cas3_yersinia CRISPR 99.0 3.8E-08 8.3E-13 104.9 18.8 91 148-241 759-881 (1110)
134 CHL00122 secA preprotein trans 98.9 1.9E-07 4.1E-12 98.3 20.2 124 82-212 361-491 (870)
135 TIGR01407 dinG_rel DnaQ family 98.9 9.7E-08 2.1E-12 103.7 18.8 167 81-251 596-813 (850)
136 PF06862 DUF1253: Protein of u 98.8 4.5E-07 9.7E-12 89.7 20.6 220 43-263 159-426 (442)
137 KOG1000 Chromatin remodeling p 98.8 4.8E-08 1E-12 95.3 13.0 107 143-249 490-598 (689)
138 PRK12902 secA preprotein trans 98.7 2.4E-06 5.2E-11 90.1 23.4 125 82-212 376-506 (939)
139 KOG0386 Chromatin remodeling c 98.7 9.6E-08 2.1E-12 100.0 11.9 132 132-263 711-847 (1157)
140 KOG1123 RNA polymerase II tran 98.7 4.1E-08 9E-13 95.8 8.4 214 18-250 391-648 (776)
141 PRK08074 bifunctional ATP-depe 98.6 3.1E-06 6.7E-11 92.7 19.0 184 80-264 672-907 (928)
142 PRK11747 dinG ATP-dependent DN 98.5 2.7E-06 6E-11 90.3 16.8 166 80-251 456-673 (697)
143 PRK07246 bifunctional ATP-depe 98.5 7.3E-06 1.6E-10 88.4 20.2 166 81-251 574-782 (820)
144 KOG0951 RNA helicase BRR2, DEA 98.5 2.2E-06 4.7E-11 91.9 13.5 222 28-266 1239-1508(1674)
145 COG1199 DinG Rad3-related DNA 98.4 8.9E-06 1.9E-10 86.3 15.5 165 80-248 403-614 (654)
146 PF13307 Helicase_C_2: Helicas 98.3 3.1E-06 6.8E-11 73.8 8.7 112 137-251 2-149 (167)
147 TIGR00596 rad1 DNA repair prot 98.3 9.4E-05 2E-09 79.1 21.2 78 19-105 9-92 (814)
148 TIGR00604 rad3 DNA repair heli 98.3 2.8E-05 6.1E-10 83.0 17.3 168 80-250 441-672 (705)
149 PF00270 DEAD: DEAD/DEAH box h 98.2 1.8E-06 4E-11 74.7 4.7 70 18-94 96-166 (169)
150 COG0553 HepA Superfamily II DN 98.1 2.3E-05 4.9E-10 85.6 13.3 119 131-249 692-817 (866)
151 cd00268 DEADc DEAD-box helicas 98.1 8E-06 1.7E-10 73.2 7.4 75 18-102 120-196 (203)
152 TIGR03117 cas_csf4 CRISPR-asso 98.1 0.00017 3.6E-09 75.2 17.6 140 81-223 372-560 (636)
153 KOG0392 SNF2 family DNA-depend 98.1 3.2E-05 7E-10 83.0 12.3 101 145-245 1340-1445(1549)
154 KOG0391 SNF2 family DNA-depend 98.1 5.3E-05 1.1E-09 80.9 13.2 131 133-264 1265-1397(1958)
155 KOG0388 SNF2 family DNA-depend 98.0 2.3E-05 5.1E-10 79.8 9.0 117 132-248 1029-1148(1185)
156 COG0653 SecA Preprotein transl 98.0 0.00012 2.6E-09 77.2 13.6 165 83-254 367-547 (822)
157 PF02399 Herpes_ori_bp: Origin 97.9 0.00028 6.1E-09 74.2 15.0 197 44-252 141-388 (824)
158 smart00487 DEXDc DEAD-like hel 97.4 0.00038 8.1E-09 61.0 7.2 83 18-112 106-190 (201)
159 COG4889 Predicted helicase [Ge 97.4 0.00011 2.4E-09 76.7 3.5 104 146-249 461-585 (1518)
160 KOG1002 Nucleotide excision re 97.3 0.0016 3.5E-08 64.4 10.3 111 141-251 634-748 (791)
161 KOG2340 Uncharacterized conser 97.3 0.0014 3.1E-08 65.2 10.0 116 147-262 554-678 (698)
162 smart00492 HELICc3 helicase su 97.3 0.0029 6.2E-08 53.5 10.6 67 158-224 4-79 (141)
163 smart00491 HELICc2 helicase su 97.2 0.0029 6.2E-08 53.6 9.7 93 158-250 4-137 (142)
164 KOG0921 Dosage compensation co 97.1 0.0012 2.5E-08 69.5 7.4 106 145-251 643-773 (1282)
165 KOG1015 Transcription regulato 97.1 0.0025 5.4E-08 67.4 9.2 114 135-248 1130-1271(1567)
166 cd00046 DEXDc DEAD-like helica 96.9 0.0015 3.3E-08 53.6 4.9 64 18-90 80-144 (144)
167 KOG4439 RNA polymerase II tran 96.8 0.014 3E-07 60.2 11.3 105 144-248 745-852 (901)
168 PF07652 Flavi_DEAD: Flaviviru 96.3 0.0038 8.3E-08 52.4 3.4 54 37-94 87-140 (148)
169 COG0610 Type I site-specific r 96.3 0.082 1.8E-06 58.4 14.6 47 192-239 590-636 (962)
170 PF13871 Helicase_C_4: Helicas 96.3 0.017 3.8E-07 54.1 8.1 59 186-244 52-118 (278)
171 PRK05580 primosome assembly pr 96.2 0.036 7.8E-07 59.1 10.8 76 145-221 190-266 (679)
172 COG1110 Reverse gyrase [DNA re 96.1 0.03 6.5E-07 60.2 9.7 77 130-206 110-192 (1187)
173 PF04851 ResIII: Type III rest 96.1 0.0063 1.4E-07 52.9 4.1 39 44-91 145-183 (184)
174 PRK10917 ATP-dependent DNA hel 96.1 0.057 1.2E-06 57.7 11.7 75 144-218 309-388 (681)
175 TIGR00595 priA primosomal prot 96.1 0.039 8.4E-07 56.7 10.1 76 145-221 25-101 (505)
176 PRK14873 primosome assembly pr 95.8 0.073 1.6E-06 56.4 11.2 77 144-221 187-265 (665)
177 PF00176 SNF2_N: SNF2 family N 95.8 0.007 1.5E-07 57.2 3.1 76 17-103 107-185 (299)
178 KOG1133 Helicase of the DEAD s 95.5 0.49 1.1E-05 49.3 15.2 108 139-250 624-778 (821)
179 TIGR00643 recG ATP-dependent D 95.3 0.14 3E-06 54.2 11.1 75 144-218 283-362 (630)
180 TIGR00580 mfd transcription-re 94.9 0.089 1.9E-06 57.8 8.5 74 145-218 500-578 (926)
181 COG1198 PriA Primosomal protei 94.6 0.1 2.2E-06 55.4 7.6 74 144-218 244-318 (730)
182 COG1200 RecG RecG-like helicas 94.5 0.23 4.9E-06 51.7 9.7 75 144-218 310-389 (677)
183 PRK10689 transcription-repair 94.1 0.43 9.3E-06 53.8 11.6 75 144-218 648-727 (1147)
184 KOG1016 Predicted DNA helicase 93.9 0.3 6.5E-06 51.3 9.0 117 145-261 719-856 (1387)
185 KOG0701 dsRNA-specific nucleas 93.4 0.068 1.5E-06 60.7 3.7 95 146-240 293-399 (1606)
186 PRK14701 reverse gyrase; Provi 93.4 0.61 1.3E-05 54.3 11.3 62 144-205 121-188 (1638)
187 KOG0383 Predicted helicase [Ge 93.3 0.22 4.8E-06 52.4 7.0 64 144-208 630-696 (696)
188 KOG0347 RNA helicase [RNA proc 93.2 0.45 9.8E-06 48.3 8.6 53 147-203 265-321 (731)
189 COG0513 SrmB Superfamily II DN 93.1 0.4 8.6E-06 49.5 8.7 68 148-219 102-180 (513)
190 PF13872 AAA_34: P-loop contai 93.0 0.18 4E-06 47.7 5.4 50 46-95 173-225 (303)
191 KOG0331 ATP-dependent RNA heli 92.2 0.92 2E-05 46.3 9.6 106 145-257 165-288 (519)
192 cd00268 DEADc DEAD-box helicas 92.0 1.2 2.5E-05 39.5 9.3 71 144-218 68-148 (203)
193 PF10593 Z1: Z1 domain; Inter 91.5 1.1 2.5E-05 41.2 8.7 88 169-261 110-202 (239)
194 PRK11634 ATP-dependent RNA hel 91.4 0.92 2E-05 48.0 9.0 71 144-218 73-154 (629)
195 TIGR01054 rgy reverse gyrase. 90.7 0.65 1.4E-05 52.6 7.4 60 145-204 121-187 (1171)
196 TIGR00614 recQ_fam ATP-depende 90.7 0.94 2E-05 46.2 8.1 74 145-218 51-132 (470)
197 KOG0339 ATP-dependent RNA heli 90.5 2.9 6.3E-05 42.3 10.7 70 145-218 295-375 (731)
198 KOG1001 Helicase-like transcri 90.4 0.063 1.4E-06 56.7 -0.8 102 146-247 540-643 (674)
199 TIGR01389 recQ ATP-dependent D 89.4 1.4 3E-05 46.3 8.3 73 146-218 54-132 (591)
200 PRK11776 ATP-dependent RNA hel 89.0 1.6 3.4E-05 44.4 8.1 70 146-219 73-153 (460)
201 COG1197 Mfd Transcription-repa 88.8 1.6 3.4E-05 48.4 8.3 75 144-218 642-721 (1139)
202 KOG1513 Nuclear helicase MOP-3 87.8 0.76 1.7E-05 48.6 4.8 75 188-262 850-935 (1300)
203 PRK11192 ATP-dependent RNA hel 86.6 2.6 5.6E-05 42.4 8.0 71 145-219 73-153 (434)
204 KOG0338 ATP-dependent RNA heli 85.9 5 0.00011 40.7 9.1 117 144-267 251-382 (691)
205 PRK04537 ATP-dependent RNA hel 85.3 2.4 5.2E-05 44.4 7.2 69 146-218 85-164 (572)
206 KOG0952 DNA/RNA helicase MER3/ 85.0 0.3 6.6E-06 53.0 0.3 135 18-165 1021-1173(1230)
207 PRK09401 reverse gyrase; Revie 84.4 4.5 9.8E-05 46.0 9.2 75 144-218 122-206 (1176)
208 PRK04837 ATP-dependent RNA hel 84.1 3.8 8.2E-05 41.0 7.8 70 146-219 84-163 (423)
209 PRK11057 ATP-dependent DNA hel 84.0 4.1 8.9E-05 43.0 8.2 58 146-203 66-123 (607)
210 KOG0330 ATP-dependent RNA heli 83.0 5.9 0.00013 38.8 8.0 84 132-219 116-210 (476)
211 PRK10590 ATP-dependent RNA hel 83.0 4.8 0.0001 40.8 8.0 69 147-219 77-155 (456)
212 PF06733 DEAD_2: DEAD_2; Inte 82.1 1 2.2E-05 39.2 2.4 45 14-60 116-160 (174)
213 PLN03137 ATP-dependent DNA hel 81.7 5.4 0.00012 44.7 8.1 60 145-204 500-561 (1195)
214 TIGR00963 secA preprotein tran 81.7 8.9 0.00019 41.1 9.5 73 140-218 92-181 (745)
215 TIGR03714 secA2 accessory Sec 81.4 1.2 2.5E-05 47.8 2.9 41 18-58 165-208 (762)
216 PF00270 DEAD: DEAD/DEAH box h 81.3 11 0.00023 31.9 8.6 56 144-203 43-103 (169)
217 PRK01297 ATP-dependent RNA hel 81.1 6.5 0.00014 40.1 8.2 72 145-219 162-243 (475)
218 smart00450 RHOD Rhodanese Homo 80.7 3.4 7.4E-05 31.2 4.8 40 142-181 53-93 (100)
219 cd01524 RHOD_Pyr_redox Member 80.1 2.9 6.3E-05 31.7 4.1 37 144-180 50-86 (90)
220 KOG0391 SNF2 family DNA-depend 79.9 2.3 5.1E-05 47.1 4.5 61 40-107 732-792 (1958)
221 PLN02955 8-amino-7-oxononanoat 78.8 25 0.00055 35.8 11.4 43 150-192 398-456 (476)
222 PTZ00110 helicase; Provisional 78.0 6.9 0.00015 40.7 7.4 70 145-218 203-282 (545)
223 KOG0329 ATP-dependent RNA heli 77.6 4.5 9.8E-05 37.3 5.0 90 146-239 111-216 (387)
224 cd01523 RHOD_Lact_B Member of 77.0 3.3 7.3E-05 32.1 3.7 38 144-181 60-97 (100)
225 COG0514 RecQ Superfamily II DN 76.0 7.6 0.00016 40.5 6.8 59 145-203 57-115 (590)
226 TIGR03817 DECH_helic helicase/ 75.8 10 0.00022 41.2 8.0 71 144-219 80-163 (742)
227 cd01529 4RHOD_Repeats Member o 75.7 5.7 0.00012 30.5 4.7 38 143-180 54-92 (96)
228 cd01518 RHOD_YceA Member of th 74.6 5.7 0.00012 30.8 4.5 38 143-180 59-97 (101)
229 PRK13766 Hef nuclease; Provisi 74.6 15 0.00034 39.8 9.2 74 143-221 56-139 (773)
230 PF13173 AAA_14: AAA domain 72.4 3.4 7.5E-05 33.8 2.8 38 45-90 61-98 (128)
231 PRK12323 DNA polymerase III su 71.2 12 0.00026 39.7 6.9 52 43-100 122-173 (700)
232 cd00046 DEXDc DEAD-like helica 70.9 30 0.00064 27.3 8.2 58 143-204 28-88 (144)
233 cd01449 TST_Repeat_2 Thiosulfa 70.7 9.3 0.0002 30.4 5.0 37 144-180 77-114 (118)
234 KOG0298 DEAD box-containing he 70.4 9.1 0.0002 43.0 6.0 99 144-246 1220-1318(1394)
235 cd01519 RHOD_HSP67B2 Member of 70.2 6.5 0.00014 30.6 3.9 37 144-180 65-102 (106)
236 PF13401 AAA_22: AAA domain; P 69.6 6.7 0.00014 31.7 3.9 38 46-90 88-125 (131)
237 COG1111 MPH1 ERCC4-like helica 69.2 21 0.00045 36.3 7.8 77 137-219 51-137 (542)
238 cd01533 4RHOD_Repeat_2 Member 68.9 11 0.00023 29.7 4.9 38 144-181 65-104 (109)
239 PRK08058 DNA polymerase III su 68.6 23 0.00051 34.2 8.1 75 18-98 78-157 (329)
240 PRK07003 DNA polymerase III su 68.4 13 0.00028 40.1 6.6 46 44-95 118-163 (830)
241 KOG0335 ATP-dependent RNA heli 68.3 12 0.00026 37.9 6.0 69 146-218 153-231 (482)
242 cd01534 4RHOD_Repeat_3 Member 68.1 7.4 0.00016 29.8 3.7 36 145-180 56-91 (95)
243 COG1205 Distinct helicase fami 67.9 61 0.0013 35.8 11.8 63 136-203 107-175 (851)
244 cd01526 RHOD_ThiF Member of th 67.9 6.5 0.00014 31.8 3.5 38 144-181 71-110 (122)
245 smart00489 DEXDc3 DEAD-like he 67.6 4.5 9.7E-05 38.4 2.8 40 17-59 211-250 (289)
246 smart00488 DEXDc2 DEAD-like he 67.6 4.5 9.7E-05 38.4 2.8 40 17-59 211-250 (289)
247 KOG0388 SNF2 family DNA-depend 67.5 12 0.00026 39.7 5.8 82 16-110 672-753 (1185)
248 PRK14951 DNA polymerase III su 67.3 16 0.00034 38.7 6.9 48 43-96 122-169 (618)
249 COG1609 PurR Transcriptional r 67.1 1.1E+02 0.0025 29.4 12.6 147 7-171 106-262 (333)
250 PRK14958 DNA polymerase III su 67.1 17 0.00036 37.5 7.0 46 43-94 117-162 (509)
251 KOG1132 Helicase of the DEAD s 66.7 2.1E+02 0.0045 31.5 15.6 139 82-224 482-656 (945)
252 PRK07940 DNA polymerase III su 66.6 35 0.00076 34.0 9.0 78 17-100 84-166 (394)
253 cd00032 CASc Caspase, interleu 66.4 84 0.0018 28.8 11.0 102 144-251 8-128 (243)
254 PF13177 DNA_pol3_delta2: DNA 66.2 39 0.00085 28.9 8.2 77 17-100 67-151 (162)
255 KOG0389 SNF2 family DNA-depend 66.2 29 0.00063 37.3 8.4 66 140-208 443-512 (941)
256 cd01444 GlpE_ST GlpE sulfurtra 66.0 16 0.00035 27.6 5.3 37 144-180 55-92 (96)
257 cd01521 RHOD_PspE2 Member of t 66.0 9.2 0.0002 30.2 3.9 38 144-181 63-102 (110)
258 PRK12898 secA preprotein trans 65.9 23 0.00051 37.6 7.8 57 141-203 140-200 (656)
259 PRK14964 DNA polymerase III su 65.8 41 0.0009 34.5 9.4 77 17-99 84-164 (491)
260 PRK14087 dnaA chromosomal repl 65.6 14 0.0003 37.5 6.0 51 7-58 161-219 (450)
261 KOG4439 RNA polymerase II tran 65.1 4.2 9.1E-05 42.8 2.1 74 18-102 432-513 (901)
262 PRK14956 DNA polymerase III su 64.6 17 0.00036 37.2 6.3 52 43-100 119-170 (484)
263 cd01532 4RHOD_Repeat_1 Member 64.5 12 0.00025 28.6 4.2 36 145-180 50-88 (92)
264 PRK13104 secA preprotein trans 64.4 33 0.00072 37.7 8.8 55 144-204 122-180 (896)
265 PF09848 DUF2075: Uncharacteri 64.0 6.6 0.00014 38.3 3.3 17 43-59 81-97 (352)
266 PRK07994 DNA polymerase III su 63.8 17 0.00038 38.5 6.5 47 43-95 117-163 (647)
267 cd01448 TST_Repeat_1 Thiosulfa 63.7 14 0.00029 29.7 4.6 37 144-180 78-116 (122)
268 PF05621 TniB: Bacterial TniB 62.7 8.2 0.00018 36.8 3.5 41 44-86 144-186 (302)
269 cd01527 RHOD_YgaP Member of th 62.7 12 0.00025 28.8 3.9 37 144-180 53-90 (99)
270 cd01528 RHOD_2 Member of the R 62.6 11 0.00023 29.2 3.7 38 144-181 57-95 (101)
271 PRK05707 DNA polymerase III su 62.6 32 0.00069 33.3 7.7 77 17-100 71-155 (328)
272 cd01447 Polysulfide_ST Polysul 62.5 6.9 0.00015 30.2 2.6 37 144-180 60-97 (103)
273 KOG1513 Nuclear helicase MOP-3 62.0 11 0.00025 40.3 4.6 57 34-91 394-455 (1300)
274 smart00115 CASc Caspase, inter 61.9 1.2E+02 0.0026 27.8 11.1 85 143-233 6-106 (241)
275 TIGR00678 holB DNA polymerase 61.8 30 0.00064 30.2 6.8 41 43-89 94-134 (188)
276 PRK07764 DNA polymerase III su 61.5 14 0.00031 40.4 5.5 48 43-96 118-165 (824)
277 PRK14952 DNA polymerase III su 60.9 31 0.00067 36.3 7.6 51 43-99 116-166 (584)
278 COG3587 Restriction endonuclea 60.5 9 0.0002 41.3 3.6 71 194-264 482-565 (985)
279 cd01520 RHOD_YbbB Member of th 60.5 11 0.00024 30.8 3.6 38 144-181 85-123 (128)
280 TIGR00696 wecB_tagA_cpsF bacte 60.5 86 0.0019 27.4 9.3 68 131-199 35-104 (177)
281 cd01525 RHOD_Kc Member of the 60.4 17 0.00036 28.2 4.5 36 145-180 65-101 (105)
282 PRK09751 putative ATP-dependen 60.3 38 0.00082 39.6 8.7 71 145-219 37-130 (1490)
283 PRK14949 DNA polymerase III su 60.3 23 0.00051 38.9 6.7 49 43-97 117-165 (944)
284 PRK14960 DNA polymerase III su 60.0 28 0.00062 37.0 7.1 47 43-95 116-162 (702)
285 PLN00206 DEAD-box ATP-dependen 59.3 33 0.00071 35.5 7.6 71 145-219 196-276 (518)
286 cd06281 PBP1_LacI_like_5 Ligan 58.9 91 0.002 28.3 9.9 39 132-171 163-201 (269)
287 COG0156 BioF 7-keto-8-aminopel 58.8 2E+02 0.0043 28.6 13.2 69 19-93 172-243 (388)
288 PF00308 Bac_DnaA: Bacterial d 58.4 8.6 0.00019 34.8 2.8 91 7-103 54-156 (219)
289 smart00487 DEXDc DEAD-like hel 58.4 73 0.0016 26.9 8.7 70 145-218 54-134 (201)
290 KOG0346 RNA helicase [RNA proc 57.4 47 0.001 33.3 7.7 69 145-217 93-174 (569)
291 PRK10287 thiosulfate:cyanide s 56.7 28 0.00061 27.5 5.1 37 144-180 59-95 (104)
292 PRK14959 DNA polymerase III su 56.3 31 0.00068 36.4 6.8 50 43-98 117-166 (624)
293 PRK06871 DNA polymerase III su 56.0 56 0.0012 31.6 8.0 78 17-100 73-156 (325)
294 PRK05986 cob(I)alamin adenolsy 55.9 31 0.00068 30.6 5.8 53 38-93 108-160 (191)
295 PRK09111 DNA polymerase III su 55.8 72 0.0016 33.7 9.4 72 17-94 100-175 (598)
296 PRK14965 DNA polymerase III su 55.4 38 0.00082 35.6 7.3 50 43-98 117-166 (576)
297 PRK14088 dnaA chromosomal repl 55.3 64 0.0014 32.6 8.7 49 9-59 152-208 (440)
298 PRK14955 DNA polymerase III su 55.1 72 0.0016 31.7 9.0 48 42-95 124-171 (397)
299 PLN03025 replication factor C 55.1 25 0.00054 33.8 5.5 50 44-99 98-147 (319)
300 PRK09112 DNA polymerase III su 55.0 36 0.00077 33.3 6.6 44 43-92 139-182 (351)
301 cd00561 CobA_CobO_BtuR ATP:cor 54.8 37 0.00081 29.2 5.9 55 38-95 88-143 (159)
302 PRK07276 DNA polymerase III su 54.7 50 0.0011 31.4 7.4 82 11-100 66-153 (290)
303 COG1199 DinG Rad3-related DNA 54.6 8.3 0.00018 41.0 2.3 43 17-61 194-236 (654)
304 PRK05320 rhodanese superfamily 54.2 24 0.00051 32.9 5.0 38 144-181 174-212 (257)
305 KOG1001 Helicase-like transcri 53.3 11 0.00025 40.1 3.0 72 18-104 235-306 (674)
306 cd01535 4RHOD_Repeat_4 Member 53.3 37 0.0008 28.5 5.7 37 144-180 48-85 (145)
307 PRK12422 chromosomal replicati 53.3 40 0.00086 34.2 6.8 42 18-60 170-217 (445)
308 KOG0741 AAA+-type ATPase [Post 53.2 70 0.0015 33.1 8.2 75 20-94 567-653 (744)
309 PRK09200 preprotein translocas 52.9 52 0.0011 35.9 7.9 58 140-203 114-176 (790)
310 TIGR02981 phageshock_pspE phag 52.0 45 0.00097 26.1 5.6 36 144-179 57-92 (101)
311 KOG1131 RNA polymerase II tran 51.6 1.8E+02 0.0038 30.2 10.7 104 147-251 532-679 (755)
312 COG1373 Predicted ATPase (AAA+ 51.6 68 0.0015 32.0 8.1 51 46-105 95-145 (398)
313 PRK05563 DNA polymerase III su 51.3 42 0.00091 35.1 6.8 48 43-96 117-164 (559)
314 PRK08727 hypothetical protein; 51.2 80 0.0017 28.7 8.0 18 44-61 92-109 (233)
315 cd06533 Glyco_transf_WecG_TagA 51.1 1.5E+02 0.0032 25.5 9.3 69 131-200 33-104 (171)
316 TIGR00708 cobA cob(I)alamin ad 51.0 36 0.00078 29.7 5.3 53 38-93 90-142 (173)
317 PRK12899 secA preprotein trans 50.9 94 0.002 34.5 9.4 53 146-204 136-192 (970)
318 PRK07993 DNA polymerase III su 50.7 69 0.0015 31.1 7.8 77 17-100 73-157 (334)
319 cd03031 GRX_GRX_like Glutaredo 50.1 84 0.0018 26.6 7.3 45 147-191 1-52 (147)
320 PRK15483 type III restriction- 50.1 17 0.00037 40.3 3.7 45 195-239 501-545 (986)
321 PRK00149 dnaA chromosomal repl 49.9 43 0.00094 33.9 6.5 49 9-58 170-224 (450)
322 TIGR00362 DnaA chromosomal rep 49.7 48 0.001 33.0 6.7 51 8-59 157-213 (405)
323 TIGR00631 uvrb excinuclease AB 49.7 2.2E+02 0.0048 30.5 12.0 105 132-237 42-177 (655)
324 PHA03368 DNA packaging termina 49.4 23 0.0005 37.6 4.4 51 45-102 352-402 (738)
325 PF03808 Glyco_tran_WecB: Glyc 49.4 1.6E+02 0.0034 25.4 9.2 69 131-200 35-106 (172)
326 PRK07414 cob(I)yrinic acid a,c 49.1 48 0.001 29.1 5.8 53 38-93 108-160 (178)
327 cd01445 TST_Repeats Thiosulfat 49.0 40 0.00087 28.0 5.2 38 143-180 93-134 (138)
328 TIGR03117 cas_csf4 CRISPR-asso 48.9 10 0.00022 40.2 1.8 38 17-59 182-220 (636)
329 PRK08691 DNA polymerase III su 48.8 59 0.0013 34.9 7.4 48 43-96 117-164 (709)
330 cd01522 RHOD_1 Member of the R 48.7 25 0.00054 28.2 3.8 38 144-181 63-101 (117)
331 PRK06964 DNA polymerase III su 48.7 1E+02 0.0022 30.1 8.6 52 43-100 130-181 (342)
332 PRK12904 preprotein translocas 48.6 75 0.0016 34.8 8.3 62 137-204 114-179 (830)
333 PLN02160 thiosulfate sulfurtra 48.5 26 0.00056 29.1 3.9 38 144-181 80-118 (136)
334 PRK14961 DNA polymerase III su 48.3 36 0.00079 33.3 5.6 41 44-90 118-158 (363)
335 PRK08769 DNA polymerase III su 48.0 51 0.0011 31.8 6.3 52 43-100 111-162 (319)
336 PF13086 AAA_11: AAA domain; P 48.0 12 0.00026 33.3 2.0 43 7-58 163-205 (236)
337 PRK08451 DNA polymerase III su 47.9 59 0.0013 33.8 7.1 45 43-93 115-159 (535)
338 PRK06090 DNA polymerase III su 47.9 70 0.0015 30.9 7.3 82 11-100 68-157 (319)
339 PRK06645 DNA polymerase III su 47.8 57 0.0012 33.7 7.0 41 43-89 126-166 (507)
340 PRK02362 ski2-like helicase; P 47.7 60 0.0013 35.2 7.6 68 144-218 66-142 (737)
341 PRK11493 sseA 3-mercaptopyruva 47.7 37 0.0008 31.9 5.3 47 134-180 217-267 (281)
342 COG2812 DnaX DNA polymerase II 47.6 21 0.00045 36.7 3.8 21 41-61 115-135 (515)
343 PTZ00424 helicase 45; Provisio 47.6 1E+02 0.0022 30.2 8.8 72 144-219 95-176 (401)
344 PRK14953 DNA polymerase III su 47.4 61 0.0013 33.3 7.1 42 43-90 117-158 (486)
345 PRK00254 ski2-like helicase; P 47.2 41 0.00089 36.3 6.2 67 145-218 68-143 (720)
346 PRK07413 hypothetical protein; 47.0 1.5E+02 0.0033 29.4 9.4 53 38-93 118-170 (382)
347 PRK08084 DNA replication initi 46.6 1E+02 0.0022 28.1 7.9 13 46-58 98-110 (235)
348 COG1168 MalY Bifunctional PLP- 46.5 65 0.0014 31.7 6.7 151 132-312 146-309 (388)
349 cd03027 GRX_DEP Glutaredoxin ( 46.2 1.1E+02 0.0023 21.9 7.0 55 147-201 2-57 (73)
350 cd00158 RHOD Rhodanese Homolog 46.2 36 0.00079 24.9 4.2 38 143-180 48-86 (89)
351 PRK14957 DNA polymerase III su 45.4 67 0.0015 33.5 7.1 43 42-90 116-158 (546)
352 cd03418 GRX_GRXb_1_3_like Glut 45.1 1.1E+02 0.0024 21.7 7.4 53 148-200 2-56 (75)
353 KOG0334 RNA helicase [RNA proc 44.9 69 0.0015 35.5 7.3 53 147-203 440-496 (997)
354 PRK14971 DNA polymerase III su 44.9 42 0.0009 35.6 5.7 49 42-96 118-166 (614)
355 KOG0392 SNF2 family DNA-depend 44.7 47 0.001 37.6 6.0 71 19-102 1080-1150(1549)
356 COG0426 FpaA Uncharacterized f 44.7 1.7E+02 0.0038 28.9 9.4 77 131-210 232-313 (388)
357 KOG0343 RNA Helicase [RNA proc 44.6 24 0.00051 36.5 3.5 54 145-203 141-198 (758)
358 PRK14969 DNA polymerase III su 44.4 63 0.0014 33.5 6.8 43 43-91 117-159 (527)
359 PF02142 MGS: MGS-like domain 44.4 25 0.00054 27.1 3.0 46 159-204 20-69 (95)
360 PRK01415 hypothetical protein; 44.3 37 0.00079 31.5 4.5 39 143-181 169-208 (247)
361 TIGR00604 rad3 DNA repair heli 44.1 17 0.00037 39.1 2.7 40 17-59 195-234 (705)
362 TIGR02397 dnaX_nterm DNA polym 44.1 1.5E+02 0.0033 28.4 9.2 66 18-89 86-155 (355)
363 TIGR03865 PQQ_CXXCW PQQ-depend 44.0 46 0.001 28.5 4.9 39 143-181 114-154 (162)
364 PRK08485 DNA polymerase III su 44.0 1.8E+02 0.0039 26.1 8.6 78 19-102 28-105 (206)
365 KOG0350 DEAD-box ATP-dependent 43.5 52 0.0011 33.6 5.6 75 145-219 215-301 (620)
366 PF01488 Shikimate_DH: Shikima 43.4 92 0.002 25.6 6.5 85 134-229 25-117 (135)
367 PRK06893 DNA replication initi 43.2 24 0.00051 32.1 3.2 48 44-95 90-139 (229)
368 PRK04296 thymidine kinase; Pro 43.0 51 0.0011 29.0 5.2 15 43-57 76-90 (190)
369 PF02572 CobA_CobO_BtuR: ATP:c 42.9 54 0.0012 28.6 5.1 53 38-93 89-141 (172)
370 PF04364 DNA_pol3_chi: DNA pol 42.4 87 0.0019 26.0 6.2 79 134-223 16-96 (137)
371 COG0607 PspE Rhodanese-related 41.5 26 0.00056 27.1 2.8 37 144-180 60-97 (110)
372 PRK00162 glpE thiosulfate sulf 41.4 34 0.00073 26.8 3.4 37 144-180 57-94 (108)
373 PRK14962 DNA polymerase III su 41.0 56 0.0012 33.4 5.7 40 44-89 116-155 (472)
374 PRK05298 excinuclease ABC subu 41.0 2.2E+02 0.0049 30.4 10.5 101 136-237 49-180 (652)
375 PRK07133 DNA polymerase III su 40.9 77 0.0017 34.2 6.9 46 43-94 116-161 (725)
376 PRK13767 ATP-dependent helicas 40.4 67 0.0014 35.6 6.6 70 146-219 85-178 (876)
377 smart00851 MGS MGS-like domain 40.3 37 0.00079 25.8 3.4 43 161-204 22-64 (90)
378 PF00581 Rhodanese: Rhodanese- 40.2 75 0.0016 24.4 5.3 38 144-181 66-109 (113)
379 PRK05642 DNA replication initi 40.1 55 0.0012 29.9 5.1 68 18-93 74-142 (234)
380 PF00072 Response_reg: Respons 40.0 73 0.0016 24.3 5.2 48 45-99 43-90 (112)
381 PRK14954 DNA polymerase III su 39.6 1.1E+02 0.0025 32.4 7.9 44 42-91 124-167 (620)
382 PRK04132 replication factor C 39.6 57 0.0012 35.8 5.8 46 45-96 630-675 (846)
383 PRK00142 putative rhodanese-re 39.5 44 0.00096 32.1 4.5 39 143-181 169-208 (314)
384 PRK05096 guanosine 5'-monophos 39.5 84 0.0018 30.5 6.2 62 31-99 107-169 (346)
385 PF14617 CMS1: U3-containing 9 39.2 88 0.0019 29.1 6.2 88 145-235 126-235 (252)
386 PRK11784 tRNA 2-selenouridine 39.0 1.7E+02 0.0036 28.6 8.4 48 144-192 87-135 (345)
387 PRK15483 type III restriction- 38.2 40 0.00087 37.5 4.3 37 48-92 204-240 (986)
388 KOG0351 ATP-dependent DNA heli 38.2 2.5E+02 0.0054 31.5 10.4 57 147-203 306-364 (941)
389 PRK05964 adenosylmethionine--8 38.2 49 0.0011 33.1 4.8 47 9-56 191-244 (423)
390 PRK10014 DNA-binding transcrip 37.6 3.6E+02 0.0077 25.4 12.9 40 132-172 230-269 (342)
391 PRK06647 DNA polymerase III su 37.4 95 0.002 32.5 6.8 45 43-93 117-161 (563)
392 PRK14948 DNA polymerase III su 37.3 1E+02 0.0022 32.7 7.1 44 44-93 120-163 (620)
393 PF14617 CMS1: U3-containing 9 37.3 25 0.00054 32.7 2.3 28 28-55 182-211 (252)
394 KOG0345 ATP-dependent RNA heli 37.3 99 0.0021 31.4 6.4 70 147-219 81-163 (567)
395 PRK10329 glutaredoxin-like pro 37.2 1.7E+02 0.0037 21.7 7.4 56 147-203 2-58 (81)
396 PRK05896 DNA polymerase III su 36.8 1E+02 0.0022 32.5 6.9 46 44-95 118-163 (605)
397 PRK05728 DNA polymerase III su 36.7 1.8E+02 0.0039 24.3 7.3 80 130-222 12-94 (142)
398 COG0329 DapA Dihydrodipicolina 36.7 2.2E+02 0.0047 27.1 8.7 47 157-203 26-81 (299)
399 TIGR02417 fruct_sucro_rep D-fr 36.6 3.6E+02 0.0079 25.2 12.1 38 132-169 224-261 (327)
400 KOG1015 Transcription regulato 36.4 42 0.0009 37.1 4.0 46 41-93 817-862 (1567)
401 KOG0342 ATP-dependent RNA heli 36.4 90 0.0019 31.8 6.0 56 144-203 153-213 (543)
402 PRK07471 DNA polymerase III su 36.2 83 0.0018 31.0 5.9 44 43-92 139-182 (365)
403 COG2109 BtuR ATP:corrinoid ade 35.9 1.1E+02 0.0025 27.1 6.0 53 38-93 115-167 (198)
404 TIGR01305 GMP_reduct_1 guanosi 35.8 99 0.0021 30.0 6.1 53 31-89 106-160 (343)
405 PRK07413 hypothetical protein; 35.2 81 0.0018 31.2 5.6 55 38-95 298-354 (382)
406 PRK07246 bifunctional ATP-depe 35.2 21 0.00045 39.2 1.7 38 17-59 413-450 (820)
407 PF05707 Zot: Zonular occluden 35.2 37 0.00081 29.9 3.0 15 45-59 79-93 (193)
408 cd01530 Cdc25 Cdc25 phosphatas 35.1 47 0.001 26.8 3.4 37 144-180 67-117 (121)
409 cd01422 MGS Methylglyoxal synt 35.0 59 0.0013 26.1 3.9 44 160-204 35-79 (115)
410 PRK13103 secA preprotein trans 34.7 1.9E+02 0.0042 32.0 8.7 67 133-205 111-181 (913)
411 PRK05818 DNA polymerase III su 34.7 2E+02 0.0042 27.0 7.7 84 11-101 49-138 (261)
412 COG2519 GCD14 tRNA(1-methylade 34.7 1.3E+02 0.0028 28.0 6.4 39 130-170 175-213 (256)
413 PRK06173 adenosylmethionine--8 34.5 59 0.0013 32.7 4.7 40 16-56 205-251 (429)
414 COG2256 MGS1 ATPase related to 34.4 82 0.0018 31.4 5.3 38 45-91 104-141 (436)
415 KOG0340 ATP-dependent RNA heli 34.4 88 0.0019 30.6 5.4 55 145-203 75-133 (442)
416 PF02602 HEM4: Uroporphyrinoge 34.2 64 0.0014 28.9 4.5 68 134-203 105-176 (231)
417 KOG4166 Thiamine pyrophosphate 34.2 3.6E+02 0.0079 27.2 9.6 98 156-254 286-412 (675)
418 PRK09004 FMN-binding protein M 34.2 2.5E+02 0.0054 23.5 7.8 65 148-233 5-73 (146)
419 PLN02723 3-mercaptopyruvate su 34.2 77 0.0017 30.5 5.3 47 134-180 255-305 (320)
420 TIGR02621 cas3_GSU0051 CRISPR- 33.6 68 0.0015 35.2 5.2 53 147-203 63-143 (844)
421 TIGR02196 GlrX_YruB Glutaredox 33.5 89 0.0019 21.6 4.4 50 152-201 7-56 (74)
422 PF09419 PGP_phosphatase: Mito 33.3 3.2E+02 0.007 23.7 8.5 59 132-194 64-130 (168)
423 PRK09860 putative alcohol dehy 33.2 2.6E+02 0.0056 27.6 8.9 72 131-202 17-95 (383)
424 cd02164 PPAT_CoAS phosphopante 33.1 48 0.001 27.9 3.2 37 16-52 88-124 (143)
425 PRK06827 phosphoribosylpyropho 33.1 1.6E+02 0.0035 29.2 7.3 61 145-206 264-330 (382)
426 PRK05723 flavodoxin; Provision 33.0 3E+02 0.0065 23.2 9.8 87 148-253 4-94 (151)
427 PRK00615 glutamate-1-semialdeh 33.0 77 0.0017 32.0 5.2 39 17-56 201-245 (433)
428 KOG1180 Acyl-CoA synthetase [L 32.8 2.1E+02 0.0045 29.9 8.0 76 144-222 114-194 (678)
429 PF12683 DUF3798: Protein of u 32.7 80 0.0017 29.6 4.8 79 143-227 60-144 (275)
430 PRK09189 uroporphyrinogen-III 32.7 1.1E+02 0.0024 27.8 5.9 73 144-236 117-192 (240)
431 cd01538 PBP1_ABC_xylose_bindin 32.6 4E+02 0.0086 24.5 11.4 40 132-171 176-215 (288)
432 PHA00012 I assembly protein 32.5 69 0.0015 31.1 4.4 46 44-90 80-128 (361)
433 PHA02544 44 clamp loader, smal 32.4 1.2E+02 0.0026 28.7 6.3 48 44-96 99-146 (316)
434 PF12689 Acid_PPase: Acid Phos 32.3 3.4E+02 0.0073 23.5 13.3 131 49-193 35-168 (169)
435 PRK14950 DNA polymerase III su 32.1 1.3E+02 0.0027 31.8 6.8 42 43-90 118-159 (585)
436 cd01423 MGS_CPS_I_III Methylgl 32.1 46 0.001 26.5 2.9 45 160-204 34-80 (116)
437 KOG0348 ATP-dependent RNA heli 31.5 2.8E+02 0.006 28.9 8.6 128 90-218 143-292 (708)
438 cd06578 HemD Uroporphyrinogen- 31.5 3E+02 0.0065 24.3 8.5 100 133-252 108-211 (239)
439 TIGR03167 tRNA_sel_U_synt tRNA 31.5 2.8E+02 0.0061 26.6 8.5 45 147-192 76-121 (311)
440 cd06296 PBP1_CatR_like Ligand- 31.4 3.8E+02 0.0083 24.0 11.4 40 131-171 164-203 (270)
441 PRK03692 putative UDP-N-acetyl 31.2 4.2E+02 0.0091 24.4 9.4 69 131-200 92-162 (243)
442 PRK14963 DNA polymerase III su 31.1 1.2E+02 0.0025 31.4 6.2 41 43-89 114-154 (504)
443 TIGR02881 spore_V_K stage V sp 30.9 78 0.0017 29.3 4.6 14 46-59 106-119 (261)
444 PF07517 SecA_DEAD: SecA DEAD- 30.9 15 0.00032 34.5 -0.3 40 19-58 168-210 (266)
445 PF01751 Toprim: Toprim domain 30.9 54 0.0012 25.3 3.0 63 148-210 1-75 (100)
446 PF00258 Flavodoxin_1: Flavodo 30.9 1.1E+02 0.0023 25.1 5.0 51 153-208 9-59 (143)
447 cd03028 GRX_PICOT_like Glutare 30.6 2.3E+02 0.0051 21.2 7.2 44 146-189 8-57 (90)
448 cd06270 PBP1_GalS_like Ligand 30.5 4E+02 0.0087 23.9 13.8 40 131-171 163-202 (268)
449 COG2927 HolC DNA polymerase II 30.4 3.3E+02 0.0071 23.0 7.6 78 135-223 17-96 (144)
450 KOG1002 Nucleotide excision re 30.2 29 0.00063 35.3 1.6 48 46-100 317-364 (791)
451 PRK05917 DNA polymerase III su 30.2 2.5E+02 0.0053 26.7 7.8 77 17-100 60-144 (290)
452 PRK13342 recombination factor 30.1 1.4E+02 0.003 29.8 6.5 38 45-91 92-129 (413)
453 COG1204 Superfamily II helicas 29.8 1.7E+02 0.0037 32.0 7.4 67 145-218 76-151 (766)
454 KOG0352 ATP-dependent DNA heli 29.8 1E+02 0.0022 31.0 5.1 57 147-203 63-121 (641)
455 PRK08116 hypothetical protein; 29.6 2.2E+02 0.0049 26.5 7.4 44 44-93 177-224 (268)
456 COG0169 AroE Shikimate 5-dehyd 29.0 4.3E+02 0.0093 25.0 9.2 64 136-210 141-205 (283)
457 PRK14086 dnaA chromosomal repl 28.9 1.1E+02 0.0024 32.3 5.7 43 16-59 343-391 (617)
458 cd01443 Cdc25_Acr2p Cdc25 enzy 28.9 2E+02 0.0043 22.5 6.1 37 144-180 65-109 (113)
459 KOG1401 Acetylornithine aminot 28.8 1.5E+02 0.0032 29.6 6.1 50 6-56 195-250 (433)
460 TIGR01306 GMP_reduct_2 guanosi 28.7 1.5E+02 0.0032 28.7 6.1 63 30-99 92-155 (321)
461 PF05872 DUF853: Bacterial pro 28.6 83 0.0018 31.9 4.4 58 44-104 253-313 (502)
462 PF04273 DUF442: Putative phos 28.6 1.3E+02 0.0028 24.0 4.9 34 130-164 72-105 (110)
463 PRK11747 dinG ATP-dependent DN 28.6 26 0.00056 37.7 1.0 14 46-59 247-260 (697)
464 PRK08903 DnaA regulatory inact 28.5 83 0.0018 28.2 4.3 42 45-92 90-133 (227)
465 TIGR00365 monothiol glutaredox 28.5 2.7E+02 0.0059 21.4 8.3 52 135-189 4-61 (97)
466 TIGR00096 probable S-adenosylm 28.5 2.4E+02 0.0053 26.6 7.4 80 130-215 13-92 (276)
467 PF12846 AAA_10: AAA-like doma 28.4 63 0.0014 29.9 3.6 17 44-60 219-235 (304)
468 PF05127 Helicase_RecD: Helica 28.4 63 0.0014 28.3 3.2 34 46-91 91-124 (177)
469 COG1019 Predicted nucleotidylt 28.4 85 0.0018 26.7 3.8 45 16-62 91-135 (158)
470 PLN02482 glutamate-1-semialdeh 28.2 1E+02 0.0022 31.5 5.2 39 17-56 246-290 (474)
471 PF01113 DapB_N: Dihydrodipico 28.1 2E+02 0.0043 23.2 6.1 54 148-203 70-123 (124)
472 PF03354 Terminase_1: Phage Te 27.9 83 0.0018 32.1 4.6 37 45-86 123-159 (477)
473 PRK08297 L-lysine aminotransfe 27.8 98 0.0021 31.3 5.0 46 10-56 218-269 (443)
474 PF11019 DUF2608: Protein of u 27.7 4.9E+02 0.011 24.0 10.4 98 80-177 97-210 (252)
475 PRK01172 ski2-like helicase; P 27.6 1.1E+02 0.0023 32.8 5.5 67 145-218 65-140 (674)
476 TIGR02181 GRX_bact Glutaredoxi 27.4 2.4E+02 0.0051 20.3 6.5 41 149-189 2-43 (79)
477 COG3973 Superfamily I DNA and 27.3 5.4E+02 0.012 27.4 9.9 87 134-236 644-736 (747)
478 TIGR03251 LAT_fam L-lysine 6-t 27.2 96 0.0021 31.1 4.8 45 11-56 212-262 (431)
479 PRK11522 putrescine--2-oxoglut 27.0 93 0.002 31.6 4.7 39 17-56 231-275 (459)
480 PRK06756 flavodoxin; Provision 27.0 3.5E+02 0.0077 22.2 7.6 71 148-236 5-79 (148)
481 PRK06209 glutamate-1-semialdeh 27.0 1.1E+02 0.0024 30.8 5.2 40 17-57 187-228 (431)
482 COG1922 WecG Teichoic acid bio 27.0 4.8E+02 0.01 24.3 8.8 69 131-200 95-166 (253)
483 PRK09264 diaminobutyrate--2-ox 26.7 91 0.002 31.2 4.5 39 17-56 198-242 (425)
484 cd01080 NAD_bind_m-THF_DH_Cycl 26.1 4.2E+02 0.0092 22.8 8.0 78 143-227 42-122 (168)
485 KOG0989 Replication factor C, 26.1 92 0.002 29.9 4.0 40 44-89 128-168 (346)
486 PLN02388 phosphopantetheine ad 25.9 77 0.0017 27.8 3.3 37 16-52 108-144 (177)
487 PRK05597 molybdopterin biosynt 25.8 91 0.002 30.5 4.2 37 144-180 313-350 (355)
488 PRK10310 PTS system galactitol 25.8 3.1E+02 0.0067 21.0 6.5 61 147-214 4-70 (94)
489 PHA02558 uvsW UvsW helicase; P 25.8 1.9E+02 0.0041 29.7 6.7 64 144-218 157-227 (501)
490 cd01446 DSP_MapKP N-terminal r 25.7 1.3E+02 0.0029 24.3 4.6 37 144-180 74-122 (132)
491 PRK12402 replication factor C 25.6 84 0.0018 29.9 3.9 41 45-91 125-165 (337)
492 PF13245 AAA_19: Part of AAA d 25.6 1.7E+02 0.0036 21.5 4.7 32 145-177 42-74 (76)
493 PRK08074 bifunctional ATP-depe 25.4 51 0.0011 36.8 2.6 16 44-59 454-469 (928)
494 TIGR03372 putres_am_tran putre 25.4 1.1E+02 0.0025 30.8 5.0 39 17-56 224-268 (442)
495 COG1435 Tdk Thymidine kinase [ 25.4 1.7E+02 0.0036 26.2 5.3 13 46-58 83-95 (201)
496 PF00462 Glutaredoxin: Glutare 25.3 2.2E+02 0.0048 19.2 6.4 51 149-199 2-53 (60)
497 TIGR03015 pepcterm_ATPase puta 25.3 73 0.0016 29.3 3.3 16 44-59 122-137 (269)
498 PF00106 adh_short: short chai 25.3 3.8E+02 0.0083 22.0 8.3 67 136-203 17-88 (167)
499 PRK00440 rfc replication facto 25.3 97 0.0021 29.2 4.3 41 46-92 103-143 (319)
500 cd00952 CHBPH_aldolase Trans-o 25.1 6E+02 0.013 24.2 9.9 46 158-203 31-85 (309)
No 1
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-72 Score=524.99 Aligned_cols=378 Identities=36% Similarity=0.641 Sum_probs=321.3
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
+||.+++.+|...+|++++||+|||+.+|.+|...|+.+.+.+.|.+||||||||+++|||||||+|..|+.|+..++++
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCE-EEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhC-------------CCcc
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-------------GDTC 147 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~-------------~~~~ 147 (394)
|+++||||+++++.+||...|.+.+|+ ++.++..|.|++|.+.++....+-+..|.++.... ..++
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GC 257 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGC 257 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcc
Confidence 999999999999999999999999997 67888999999999999888888887777765431 2358
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHH
Q 016133 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 227 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~ 227 (394)
+||||.|++.|++++-.|...|+++..||+||...+|.+++++|++++++||+||..||||||.|+|++||||++|.+++
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~A 337 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLA 337 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhh
Q 016133 228 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 307 (394)
Q Consensus 228 ~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f 307 (394)
.|||++|||||+|+++.|-++|+..|...+++++.....+... ....+...+..+..|..|++||+..+|||..|.+||
T Consensus 338 gYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklre-k~~ke~~~k~~I~~F~k~~eFCE~~~CRH~~ia~fF 416 (641)
T KOG0352|consen 338 GYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLRE-KAKKEMQIKSIITGFAKMLEFCESARCRHVSIASFF 416 (641)
T ss_pred HHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHH-hcchhhhHHHHHHHHHHHHHHHHHcccchHHHHHhc
Confidence 9999999999999999999999999999999998865443221 122344456677889999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCchHhhHHHHHHHHHHhhcCCceeEEee-cCccCC---CCccchhhcccccCCCCccccccC
Q 016133 308 GEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFIS-SQDMTD---GGQYSEFWNRDDEASGSEEDISDC 382 (394)
Q Consensus 308 ~~~~~~~~c~~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
|+..+ .|..+||.|+.|....+.++...+.+....-...+-.. +.+++. ++.+..+-.|+++.++++++-.++
T Consensus 417 gD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~~s~~~~~~~~~~~~~~~~~~g~~gg~~~~~ey~~g~~gs~d~s~d~ 493 (641)
T KOG0352|consen 417 DDTEC--PCKTNCDYCRDPTKTIRNVEAFINSEASTGRSMFRKSASSGESGFDSVYGGGKRGGETEDELLSAASTSKDA 493 (641)
T ss_pred CCCCC--CCCCCccccCCHHHHHHHHHHHHHhhhhccccccccccCccccccccccccccccccccccccCCCCcchhh
Confidence 99876 58888999997765555555555433221101111111 223322 234666777777777776554443
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-68 Score=533.26 Aligned_cols=310 Identities=44% Similarity=0.808 Sum_probs=281.7
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
+||..++..+..|. +++||++||.+.+|.++..|.. ..+.++|||||||+++|||||||+|.+|+.++..+|++
T Consensus 94 ~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~~----~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~ 167 (590)
T COG0514 94 EERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLKR----LPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNP 167 (590)
T ss_pred HHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHHh----CCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCC
Confidence 58999999999996 9999999999999999888873 45999999999999999999999999999999999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 161 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l 161 (394)
|+++||||+++.+..||.+.|++..+.++..+++|||++|.+..+.....++..+.. ......+++||||.|++.++.+
T Consensus 168 p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~i 246 (590)
T COG0514 168 PVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEEL 246 (590)
T ss_pred CEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHH
Confidence 999999999999999999999999999999999999999999987633333332222 1245667899999999999999
Q ss_pred HHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCC
Q 016133 162 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241 (394)
Q Consensus 162 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 241 (394)
+++|.+.|+.+..|||||+.++|..++++|..++++|+|||.|||||||+|||++||||++|.|+++|+|++|||||||.
T Consensus 247 a~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 247 AEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCCCCCcCCCCC
Q 016133 242 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCD 321 (394)
Q Consensus 242 ~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~c~~~Cd 321 (394)
++.|+++|++.|....++++....+ ..+..+.....+.+|..||++..|||..+++|||+. .+..|++ ||
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~-~~~~c~~-c~ 396 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED-EPEPCGN-CD 396 (590)
T ss_pred cceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc-ccccccC-CC
Confidence 9999999999999999999876543 344556667889999999999999999999999998 5678985 99
Q ss_pred CCCCchH
Q 016133 322 ACKHPNL 328 (394)
Q Consensus 322 ~C~~~~~ 328 (394)
+|..+..
T Consensus 397 ~c~~~~~ 403 (590)
T COG0514 397 NCLDTPK 403 (590)
T ss_pred cccCcch
Confidence 9998654
No 3
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-63 Score=521.18 Aligned_cols=342 Identities=45% Similarity=0.783 Sum_probs=301.6
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChH-HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 80 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~-~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 80 (394)
.+|..|++.|.+|.+.++|+|+|||.+...+ +...+..+...+.+.++|||||||+++|||||||+|++|+.++..+|+
T Consensus 341 ~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~ 420 (941)
T KOG0351|consen 341 AERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG 420 (941)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC
Confidence 4678999999999888999999999776554 555677788788899999999999999999999999999999999999
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHH
Q 016133 81 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~ 160 (394)
+|+|+||||+++.+..||.+.|++.++.++..+++|+|++|.|..+......+..+...-..++.+++||||.++.+|+.
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~ 500 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQ 500 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHH
Confidence 99999999999999999999999999999999999999999999987544555555555566788899999999999999
Q ss_pred HHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 161 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 161 l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
++..|.+.|+++.+||+||++.+|..++++|..++++|+|||-|||||||+|||++||||++|+|++.|||++|||||||
T Consensus 501 vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG 580 (941)
T KOG0351|consen 501 VSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDG 580 (941)
T ss_pred HHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhh-hhhhhHHHHHHHhhc-ccchHHHHHhhhCCCCCCCCcC-
Q 016133 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCK- 317 (394)
Q Consensus 241 ~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~Crr~~l~~~f~~~~~~~~c~- 317 (394)
.++.|++||+..|...++.++....... ...+ .....+.+|+.||++ +.|||+.+++|||+.+....|.
T Consensus 581 ~~s~C~l~y~~~D~~~l~~ll~s~~~~~--------~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~c~~ 652 (941)
T KOG0351|consen 581 LPSSCVLLYGYADISELRRLLTSGNRLS--------GVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKHCKK 652 (941)
T ss_pred CcceeEEecchhHHHHHHHHHHcccccc--------chhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhhccC
Confidence 9999999999999999999998762111 1112 456788999999996 7999999999999998888999
Q ss_pred -CCCCCCCCchHhhHHHHHHHHHHhhcCCceeEEe
Q 016133 318 -NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI 351 (394)
Q Consensus 318 -~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (394)
+.||+|..+..+...+.++...+.+-.....++.
T Consensus 653 ~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~ 687 (941)
T KOG0351|consen 653 HKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYT 687 (941)
T ss_pred CchHHHhhcccccchHHHHHHHHHHHHhhhheeee
Confidence 7999999987666666666555444333444444
No 4
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.6e-62 Score=512.46 Aligned_cols=324 Identities=40% Similarity=0.747 Sum_probs=278.2
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChH-HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~-~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
++.+++..+.+....++|||+|||.+.+.. ++..+..+.....+.+||||||||+++|||+|||+|+.|..++..+|++
T Consensus 538 eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~v 617 (1195)
T PLN03137 538 EQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNI 617 (1195)
T ss_pred HHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCC
Confidence 566777887773335899999999887654 4555555555677999999999999999999999999999999999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhC-CCccEEEEeCcHHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDE 160 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~ 160 (394)
|+++||||+++.+..++...|++.++.++..++++||++|.+..+. ......+..++... .+.++||||+|++.|+.
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~~~esgIIYC~SRke~E~ 695 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENHFDECGIIYCLSRMDCEK 695 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcccCCCceeEeCchhHHHH
Confidence 9999999999999999999999999999999999999999988653 23345666666543 35689999999999999
Q ss_pred HHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 161 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 161 l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
++..|...|+.+..|||+|++++|..++++|.+|+++|||||++|+||||+|+|++||||++|+|++.|+||+|||||+|
T Consensus 696 LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG 775 (1195)
T PLN03137 696 VAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 775 (1195)
T ss_pred HHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecccHHHHHHHHHhcccCCCC------ccchhHhhhhhhhhhHHHHHHHhhcc-cchHHHHHhhhCCCCCC
Q 016133 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQIPV 313 (394)
Q Consensus 241 ~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~Crr~~l~~~f~~~~~~ 313 (394)
.+|.|++||+..|...++.++......... ...+.....+...+.|.+|+.||++. .|||+.||.||||.+..
T Consensus 776 ~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~ 855 (1195)
T PLN03137 776 QRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDS 855 (1195)
T ss_pred CCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCc
Confidence 999999999999999999998754322110 00111223345667899999999996 89999999999998766
Q ss_pred CCcCCCCCCCCCchH
Q 016133 314 SLCKNSCDACKHPNL 328 (394)
Q Consensus 314 ~~c~~~Cd~C~~~~~ 328 (394)
..|++.||||..+..
T Consensus 856 ~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 856 TNCKKTCDNCSSSKS 870 (1195)
T ss_pred cCCCCCCCCCCCCCc
Confidence 679988999987543
No 5
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-56 Score=464.54 Aligned_cols=305 Identities=38% Similarity=0.716 Sum_probs=269.1
Q ss_pred HHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCE
Q 016133 4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 83 (394)
Q Consensus 4 r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~ 83 (394)
+..++..+.+|. ++++|+|||.+.++.++..+.. .++++|||||||++++||++|||+|..|..++..+|+.|+
T Consensus 104 ~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~~----~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 104 QLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLAH----WNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred HHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHhh----CCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcE
Confidence 445677788886 8999999999988877665542 3589999999999999999999999999999999999999
Q ss_pred EEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHH
Q 016133 84 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 163 (394)
Q Consensus 84 l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~ 163 (394)
+++|||+++.+..++...+++.+|.++..++++||+.|.+.... .....+..++....+.++||||+|++.|+.++.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~ 254 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAA 254 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 99999999999999999999999999889999999998876543 345566777777777899999999999999999
Q ss_pred HHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCc
Q 016133 164 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 243 (394)
Q Consensus 164 ~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g 243 (394)
.|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||++|.|+++|+||+|||||+|.+|
T Consensus 255 ~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~ 334 (607)
T PRK11057 255 RLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334 (607)
T ss_pred HHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCCCCCcCCCCCCC
Q 016133 244 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 323 (394)
Q Consensus 244 ~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~c~~~Cd~C 323 (394)
.|++||++.|...++.++...... .........+..|..||++..|||+.|++||||... ..|+ .||+|
T Consensus 335 ~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l~yf~e~~~-~~c~-~cd~c 403 (607)
T PRK11057 335 EAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQ-EPCG-NCDIC 403 (607)
T ss_pred eEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHhCCCCC-CCCC-CCCCC
Confidence 999999999999888887643211 112233457889999999999999999999999864 3576 79999
Q ss_pred CCchH
Q 016133 324 KHPNL 328 (394)
Q Consensus 324 ~~~~~ 328 (394)
..+..
T Consensus 404 ~~~~~ 408 (607)
T PRK11057 404 LDPPK 408 (607)
T ss_pred CCccc
Confidence 98654
No 6
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-56 Score=450.02 Aligned_cols=307 Identities=43% Similarity=0.766 Sum_probs=265.3
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChH-HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~-~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
++..++.++..+. ++++|+|||.+.++. ++..+. ...++++|||||||++++||++||+.|..|..++..+|++
T Consensus 89 ~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 89 QQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred HHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 4566788887776 899999999887765 444442 4567999999999999999999999999999999999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHH-hCCCccEEEEeCcHHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IVF~~s~~~~~~ 160 (394)
|+++||||+++.+..++.+.+++.++.++..+++++|++|.+..... ..+..+..++. ..++.++||||+|++.++.
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~ 241 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQ 241 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEECcHHHHHH
Confidence 99999999999999999999999999999999999999998877642 45566666665 4556677999999999999
Q ss_pred HHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 161 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 161 l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
++..|.+.|+.+..|||+|++++|..+++.|++|+++|||||++++||||+|+|++||||++|.|++.|+||+|||||+|
T Consensus 242 la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 242 VTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321 (470)
T ss_pred HHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCC-----CCC
Q 016133 241 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP-----VSL 315 (394)
Q Consensus 241 ~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~-----~~~ 315 (394)
.+|.|++||++.|...++.++....... ........++.|..|++...|||+.|++|||+... ...
T Consensus 322 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~~~~~~~~ 392 (470)
T TIGR00614 322 LPSECHLFYAPADINRLRRLLMEEPDGQ---------QRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLNKSFGIMG 392 (470)
T ss_pred CCceEEEEechhHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHhccccCHHHHHHHHcCCccccccccccc
Confidence 9999999999999999998887543211 11223345677888888899999999999999632 234
Q ss_pred cCCCCCCCCC
Q 016133 316 CKNSCDACKH 325 (394)
Q Consensus 316 c~~~Cd~C~~ 325 (394)
|..+||+|..
T Consensus 393 ~~~~C~~C~~ 402 (470)
T TIGR00614 393 TEKCCDNCCK 402 (470)
T ss_pred CCCCCCCCCC
Confidence 6667777764
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.2e-56 Score=459.89 Aligned_cols=306 Identities=41% Similarity=0.716 Sum_probs=271.8
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
++..++..+..|. ++++|+|||.+.++.+...+. ..++++||||||||+++||++|||.|.++..++..+|+.|
T Consensus 91 ~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l~----~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 91 EQQDIEKALVNGE--LKLLYVAPERLEQDYFLNMLQ----RIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred HHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHHh----cCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC
Confidence 5667788888886 899999999998877665543 3469999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~ 162 (394)
++++|||+++.+..++...+++.++.++..+++++|+.|.+.... .+...+..++....+.++||||+|++.++.++
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la 241 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYASSRKKVEELA 241 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 999999999999999999999999888889999999999887653 35566777777766779999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCC
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 242 (394)
+.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|+++|+|++|||||+|.+
T Consensus 242 ~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~ 321 (591)
T TIGR01389 242 ERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLP 321 (591)
T ss_pred HHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCCCCCcCCCCCC
Q 016133 243 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDA 322 (394)
Q Consensus 243 g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~c~~~Cd~ 322 (394)
+.|+++|++.|...+++++...... .+........+.+|.+||++..|||..+++|||+.. ...|+ .||+
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~-~~~c~-~cd~ 391 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENE-VEPCG-NCDN 391 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCC-CCCCC-CCCC
Confidence 9999999999999999888653221 122233456788999999999999999999999974 34687 7999
Q ss_pred CCCch
Q 016133 323 CKHPN 327 (394)
Q Consensus 323 C~~~~ 327 (394)
|..+.
T Consensus 392 c~~~~ 396 (591)
T TIGR01389 392 CLDPP 396 (591)
T ss_pred CCCCC
Confidence 98754
No 8
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.5e-57 Score=421.41 Aligned_cols=311 Identities=41% Similarity=0.761 Sum_probs=285.0
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceec-ChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~-tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
+-+.+...+.+..+.++++|+|||.++ +..++..|.+....+.+.+|.|||+||.++|||||||+|..|+-+.+.+|++
T Consensus 172 ~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~ 251 (695)
T KOG0353|consen 172 EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGA 251 (695)
T ss_pred HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCC
Confidence 446678888888889999999999887 5568899999889999999999999999999999999999999999999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCch-hhHHHHHHHHHHh-CCCccEEEEeCcHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLKA-NGDTCAIVYCLERTTCD 159 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~-~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~ 159 (394)
|+++||||++..+..+....|++.....++.+++|||++|.|+.++.. ++-.+.+..+++. ..++.+||||-|++.|+
T Consensus 252 ~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCE 331 (695)
T ss_pred ceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHH
Confidence 999999999999999999999999999999999999999999988754 4566778887764 46778999999999999
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHH--------
Q 016133 160 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ-------- 231 (394)
Q Consensus 160 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Q-------- 231 (394)
.++..|+..|+.+..||+.|.+++|..+.+.|..|+++|+|||-+||||||.|+|++|||..+|+|++.|+|
T Consensus 332 kva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillr 411 (695)
T KOG0353|consen 332 KVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLR 411 (695)
T ss_pred HHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------HHhhcccCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchhH
Q 016133 232 -----------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 276 (394)
Q Consensus 232 -----------------------------------r~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~ 276 (394)
+.|||||++.++.|+++|.-.|..+...+....
T Consensus 412 mtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e------------ 479 (695)
T KOG0353|consen 412 MTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQME------------ 479 (695)
T ss_pred HhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHH------------
Confidence 899999999999999999999988887766432
Q ss_pred hhhhhhhhhHHHHHHHhhc-ccchHHHHHhhhCCCCCCCCcCCCCCCCCCchH
Q 016133 277 RSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKHPNL 328 (394)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~-~~Crr~~l~~~f~~~~~~~~c~~~Cd~C~~~~~ 328 (394)
..-++.+..|+.||.. +.|||..+.+||++.+.+..|++.||+|...+.
T Consensus 480 ---~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n~ 529 (695)
T KOG0353|consen 480 ---NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDNA 529 (695)
T ss_pred ---hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCcc
Confidence 3345678899999998 789999999999999999999999999986443
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=320.92 Aligned_cols=230 Identities=26% Similarity=0.406 Sum_probs=191.2
Q ss_pred ecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
++|||++.++.+ ...+.++.++|+||||.|++.| |+++.++| +.+. .+..|++++|||.|..+.......|.
T Consensus 220 iaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~- 294 (519)
T KOG0331|consen 220 IATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN- 294 (519)
T ss_pred EeCChHHHHHHHcCCccccceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc-
Confidence 788898888744 4456789999999999999998 99988876 5555 33568999999999999986666665
Q ss_pred CCCEEEecCCC-----CCCeEEEEEEcCchhhHHHHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEec
Q 016133 105 QNPLVLKSSFN-----RPNLFYEVRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 176 (394)
Q Consensus 105 ~~~~~~~~~~~-----~~nl~~~v~~~~~~~~~~~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h 176 (394)
++..+..... ..++...+...+ ...+...|..+|.. ..++++||||+|++.|++|+..|+..++++..+|
T Consensus 295 -~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iH 372 (519)
T KOG0331|consen 295 -NPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIH 372 (519)
T ss_pred -CceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeec
Confidence 6665554432 233433333333 34455555555543 3567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHH
Q 016133 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 177 ~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~ 256 (394)
|+.++.+|..+++.|++|+..|||||++++||+|+|+|++|||||+|.++++|+||+||+||+|+.|.+++|+...+...
T Consensus 373 Gd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 373 GDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhc
Q 016133 257 MEFILSKN 264 (394)
Q Consensus 257 ~~~i~~~~ 264 (394)
...+.+..
T Consensus 453 a~~l~~~l 460 (519)
T KOG0331|consen 453 ARELIKVL 460 (519)
T ss_pred HHHHHHHH
Confidence 77766543
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-37 Score=314.09 Aligned_cols=230 Identities=23% Similarity=0.320 Sum_probs=195.1
Q ss_pred ecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
|+|||++.++.. ......+.++|+||||.|++.| |.++...+ ....| +.|+++||||++..+.......+
T Consensus 155 VaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G--f~~~i~~I---~~~~p~~~qtllfSAT~~~~i~~l~~~~l-- 227 (513)
T COG0513 155 VATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG--FIDDIEKI---LKALPPDRQTLLFSATMPDDIRELARRYL-- 227 (513)
T ss_pred EECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC--CHHHHHHH---HHhCCcccEEEEEecCCCHHHHHHHHHHc--
Confidence 678888877743 3467789999999999999998 88877665 33444 79999999999997666444444
Q ss_pred CCCEEEecCC-----CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 105 QNPLVLKSSF-----NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 105 ~~~~~~~~~~-----~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
.+|..+.... ..+++...+........++..|..+++.....++||||+|+..++.++..|...|+++..+||+|
T Consensus 228 ~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 228 NDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred cCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 4676554431 34556555555544346999999999988777899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc-cHHHHH
Q 016133 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRME 258 (394)
Q Consensus 180 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~-d~~~~~ 258 (394)
++.+|.++++.|++|+.+||||||+++||||+|+|++|||||+|.+++.|+||+||+||+|..|.+++|+.+. |...+.
T Consensus 308 ~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 308 PQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 888888
Q ss_pred HHHHhc
Q 016133 259 FILSKN 264 (394)
Q Consensus 259 ~i~~~~ 264 (394)
.+.+..
T Consensus 388 ~ie~~~ 393 (513)
T COG0513 388 RIEKRL 393 (513)
T ss_pred HHHHHH
Confidence 777654
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.3e-37 Score=294.31 Aligned_cols=225 Identities=25% Similarity=0.378 Sum_probs=187.7
Q ss_pred eecChHHHHH-H-HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-C----------------------C
Q 016133 27 LTATPGFMSK-L-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D----------------------V 81 (394)
Q Consensus 27 ~v~tp~~~~~-l-~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~----------------------~ 81 (394)
+|+|||++.+ | +...-++...++|+|||+.+.+.| |.|+|..+..-..... . .
T Consensus 376 viatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred eecCchHHHHHHHHHHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 4778887655 3 344446778999999999999999 8999887532211100 1 5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCC---CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 158 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~ 158 (394)
|.++||||++|.+...... .+..|+++..++ ..|-+...+..... +.+...|..+++++...++|||+|+++.|
T Consensus 454 qT~mftatm~p~verlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred EEEEEecCCChHHHHHHHH--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhH
Confidence 7899999999999874444 457888776554 33334444444443 55689999999988778999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhccc
Q 016133 159 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238 (394)
Q Consensus 159 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR 238 (394)
+.||+.|.+.|+.+..|||+-++++|+.+++.|++|..+|||||+++++|||+|||++|||||+++|+++|.||+||+||
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgR 610 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610 (673)
T ss_pred HHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecccHHH
Q 016133 239 DQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 239 ~g~~g~~i~l~~~~d~~~ 256 (394)
+|+.|.++.|+++.|-..
T Consensus 611 AGk~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 611 AGKSGTAISFLTPADTAV 628 (673)
T ss_pred cccCceeEEEeccchhHH
Confidence 999999999999999553
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.4e-36 Score=308.63 Aligned_cols=230 Identities=23% Similarity=0.355 Sum_probs=182.1
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
|+||+++.++ .....+.++++|||||||++++|| |++.+..+ +....++.|++++|||++..+... ...+...
T Consensus 258 VaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g--f~~~i~~i--l~~~~~~~q~l~~SAT~p~~v~~l-~~~l~~~ 332 (545)
T PTZ00110 258 IACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG--FEPQIRKI--VSQIRPDRQTLMWSATWPKEVQSL-ARDLCKE 332 (545)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc--hHHHHHHH--HHhCCCCCeEEEEEeCCCHHHHHH-HHHHhcc
Confidence 4455555444 233456779999999999999998 88877766 333446899999999999887653 3333333
Q ss_pred CCEEEecCC----CCCCeEEEEEEcCchhhHHHHHHHHHHhC--CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 106 NPLVLKSSF----NRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 106 ~~~~~~~~~----~~~nl~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
.+..+..+. ...++...+.... ...+...|..++... .+.++||||+|++.|+.++..|...|+.+..+||++
T Consensus 333 ~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~ 411 (545)
T PTZ00110 333 EPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDK 411 (545)
T ss_pred CCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCC
Confidence 455443321 1234433333222 234566666666543 466999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHH
Q 016133 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259 (394)
Q Consensus 180 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~ 259 (394)
++++|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|++++|....+.
T Consensus 412 ~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~ 491 (545)
T PTZ00110 412 KQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARD 491 (545)
T ss_pred cHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHh
Q 016133 260 ILSK 263 (394)
Q Consensus 260 i~~~ 263 (394)
+++.
T Consensus 492 l~~~ 495 (545)
T PTZ00110 492 LVKV 495 (545)
T ss_pred HHHH
Confidence 6554
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-37 Score=305.71 Aligned_cols=227 Identities=20% Similarity=0.293 Sum_probs=183.1
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHh
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESL 102 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l 102 (394)
|+||+++..+ ........+++|||||||++++|| |..++.. +....| ..+.+++|||++..+...+...+
T Consensus 138 V~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~--f~~~i~~---i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~ 212 (423)
T PRK04837 138 IGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG--FIKDIRW---LFRRMPPANQRLNMLFSATLSYRVRELAFEHM 212 (423)
T ss_pred EECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc--cHHHHHH---HHHhCCCccceeEEEEeccCCHHHHHHHHHHC
Confidence 4555555444 234556789999999999999998 6666555 444444 45679999999998877554444
Q ss_pred CCCCCEEEecCC---CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 103 CLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 103 ~~~~~~~~~~~~---~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
.+|..+.... ...++...... .....+...|..++......++||||+|++.|+.++..|...|+++..+||+|
T Consensus 213 --~~p~~i~v~~~~~~~~~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~ 289 (423)
T PRK04837 213 --NNPEYVEVEPEQKTGHRIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 289 (423)
T ss_pred --CCCEEEEEcCCCcCCCceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 4555443322 12333333332 23356777888888877677999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHH
Q 016133 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259 (394)
Q Consensus 180 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~ 259 (394)
++++|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+.+.|...+..
T Consensus 290 ~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~ 369 (423)
T PRK04837 290 AQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPA 369 (423)
T ss_pred ChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877776
Q ss_pred HHH
Q 016133 260 ILS 262 (394)
Q Consensus 260 i~~ 262 (394)
+.+
T Consensus 370 i~~ 372 (423)
T PRK04837 370 IET 372 (423)
T ss_pred HHH
Confidence 644
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-37 Score=286.16 Aligned_cols=232 Identities=22% Similarity=0.285 Sum_probs=194.0
Q ss_pred eecChHHHHHHH---hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~---~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+|+|||++.++. +.+++..++++|+||||++++.. |-+.+..+ |....+..+++++|||++..+.+. ....
T Consensus 183 lVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d--F~~~ld~I--Lk~ip~erqt~LfsATMt~kv~kL--~ras 256 (476)
T KOG0330|consen 183 LVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD--FEEELDYI--LKVIPRERQTFLFSATMTKKVRKL--QRAS 256 (476)
T ss_pred EEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh--hHHHHHHH--HHhcCccceEEEEEeecchhhHHH--Hhhc
Confidence 478999887763 45667789999999999999854 88776665 333334899999999999999873 3556
Q ss_pred CCCCEEEecCCC---CCCe--EEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC
Q 016133 104 LQNPLVLKSSFN---RPNL--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178 (394)
Q Consensus 104 ~~~~~~~~~~~~---~~nl--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~ 178 (394)
+++|..+..+.. .+++ +|..... ..+-..|..+++...+.++||||+|...++.++-.|+..|+.+..+||.
T Consensus 257 l~~p~~v~~s~ky~tv~~lkQ~ylfv~~---k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGq 333 (476)
T KOG0330|consen 257 LDNPVKVAVSSKYQTVDHLKQTYLFVPG---KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQ 333 (476)
T ss_pred cCCCeEEeccchhcchHHhhhheEeccc---cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccch
Confidence 778876665532 2222 2222222 2455667788888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHH
Q 016133 179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 258 (394)
|++..|...++.|++|...||||||+++||+|+|.|++|||||+|.+..+|+||+||+||.|.+|.++.+++.-|...+.
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~q 413 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQ 413 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcccC
Q 016133 259 FILSKNQSK 267 (394)
Q Consensus 259 ~i~~~~~~~ 267 (394)
+|......+
T Consensus 414 rIE~~~gkk 422 (476)
T KOG0330|consen 414 RIEHALGKK 422 (476)
T ss_pred HHHHHHhcC
Confidence 887665444
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-36 Score=305.27 Aligned_cols=229 Identities=22% Similarity=0.317 Sum_probs=185.8
Q ss_pred eecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+++||+++..+.. ......+++||+||||+++++| |.+.+..+ ....| ..|++++|||+++.+.......
T Consensus 127 vV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g--~~~~l~~i---~~~~~~~~q~ll~SAT~~~~~~~l~~~~-- 199 (460)
T PRK11776 127 IVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG--FQDAIDAI---IRQAPARRQTLLFSATYPEGIAAISQRF-- 199 (460)
T ss_pred EEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC--cHHHHHHH---HHhCCcccEEEEEEecCcHHHHHHHHHh--
Confidence 4566776655532 3345679999999999999988 77766554 44444 7899999999998876643333
Q ss_pred CCCCEEEecC--CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 104 LQNPLVLKSS--FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 104 ~~~~~~~~~~--~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
+.+|..+... ...+++........ ...+...+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|++
T Consensus 200 ~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~ 278 (460)
T PRK11776 200 QRDPVEVKVESTHDLPAIEQRFYEVS-PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQ 278 (460)
T ss_pred cCCCEEEEECcCCCCCCeeEEEEEeC-cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 3455544332 22333433333222 24578888888887777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 182 ~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
.+|..+++.|++|+++|||||+++++|||+|++++||||++|.++++|+||+||+||.|+.|.+++|+.+.|...++.+.
T Consensus 279 ~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~ 358 (460)
T PRK11776 279 RDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIE 358 (460)
T ss_pred HHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877775
Q ss_pred Hh
Q 016133 262 SK 263 (394)
Q Consensus 262 ~~ 263 (394)
+.
T Consensus 359 ~~ 360 (460)
T PRK11776 359 DY 360 (460)
T ss_pred HH
Confidence 54
No 16
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-36 Score=271.78 Aligned_cols=230 Identities=20% Similarity=0.357 Sum_probs=192.1
Q ss_pred eecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+.+|||+..++.+ ....+.+.++|+||||.+++.| |... +..+.+.+ |+.|++++|||+|.++.+... ..
T Consensus 149 VsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg--fk~Q---iydiyr~lp~~~Qvv~~SATlp~eilemt~--kf 221 (400)
T KOG0328|consen 149 VSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG--FKEQ---IYDIYRYLPPGAQVVLVSATLPHEILEMTE--KF 221 (400)
T ss_pred eeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh--HHHH---HHHHHHhCCCCceEEEEeccCcHHHHHHHH--Hh
Confidence 4579998877743 3445679999999999999877 6654 33344444 499999999999999988444 34
Q ss_pred CCCCEEEecCCC---CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 104 LQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 104 ~~~~~~~~~~~~---~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.+|+.+-...+ ...+...+...+..+.++..|+.+.....-.+++|||||++.++.+.+.+++..+.+...||+|+
T Consensus 222 mtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~ 301 (400)
T KOG0328|consen 222 MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDME 301 (400)
T ss_pred cCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcc
Confidence 677765433322 22232223333444679999999988877778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i 260 (394)
+++|.+++..|++|+.+||++|++.++|+|+|-|++|||||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+
T Consensus 302 qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 302 QKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDI 381 (400)
T ss_pred hhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHh
Q 016133 261 LSK 263 (394)
Q Consensus 261 ~~~ 263 (394)
.+.
T Consensus 382 eq~ 384 (400)
T KOG0328|consen 382 EQY 384 (400)
T ss_pred HHH
Confidence 654
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.7e-36 Score=301.36 Aligned_cols=228 Identities=23% Similarity=0.332 Sum_probs=180.6
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
|+||+++..+ ........+++|||||||++++|| |...+.. +...+| ..|++++|||+++.+.......+
T Consensus 130 V~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~--~~~~i~~---il~~l~~~~q~l~~SAT~~~~~~~l~~~~~-- 202 (456)
T PRK10590 130 VATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG--FIHDIRR---VLAKLPAKRQNLLFSATFSDDIKALAEKLL-- 202 (456)
T ss_pred EEChHHHHHHHHcCCcccccceEEEeecHHHHhccc--cHHHHHH---HHHhCCccCeEEEEeCCCcHHHHHHHHHHc--
Confidence 3444444443 233456779999999999999998 6555444 444444 67899999999988765443333
Q ss_pred CCCEEEec---CCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 105 QNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 105 ~~~~~~~~---~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
.++..+.. ....+++...+...+ ...+...+..++......++||||+|+..++.+++.|.+.|+.+..+||+|++
T Consensus 203 ~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~ 281 (456)
T PRK10590 203 HNPLEIEVARRNTASEQVTQHVHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQ 281 (456)
T ss_pred CCCeEEEEecccccccceeEEEEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCH
Confidence 34443322 222334443333332 24456667777776667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 182 ~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
++|..+++.|++|+++|||||+++++|||+|+|++||||++|.++++|+||+||+||+|..|.+++|+...|...++.+.
T Consensus 282 ~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 282 GARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred HHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887766
Q ss_pred Hh
Q 016133 262 SK 263 (394)
Q Consensus 262 ~~ 263 (394)
+.
T Consensus 362 ~~ 363 (456)
T PRK10590 362 KL 363 (456)
T ss_pred HH
Confidence 54
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.7e-35 Score=297.17 Aligned_cols=229 Identities=24% Similarity=0.344 Sum_probs=186.1
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
|+||+++..+ ........+++|||||||++++|| |...+..+.. ......|+++||||++.....++...+. .
T Consensus 128 V~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~--~~~~~~~i~~--~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~ 202 (434)
T PRK11192 128 VATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG--FAQDIETIAA--ETRWRKQTLLFSATLEGDAVQDFAERLL-N 202 (434)
T ss_pred EEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC--cHHHHHHHHH--hCccccEEEEEEeecCHHHHHHHHHHHc-c
Confidence 4556555444 233345679999999999999998 7777666522 2223678999999998776666666653 4
Q ss_pred CCEEEecCC---CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHH
Q 016133 106 NPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182 (394)
Q Consensus 106 ~~~~~~~~~---~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~ 182 (394)
++..+.... .+.++.......+....+...|..+++.....++||||+|++.++.++..|.+.|+.+..+||+|++.
T Consensus 203 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~ 282 (434)
T PRK11192 203 DPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQA 282 (434)
T ss_pred CCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHH
Confidence 555444332 23445444444444567788888888876677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 183 ~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
+|..+++.|++|+++|||||+++++|||+|+|++||||++|.+...|+||+||+||+|..|.+++++...|...++.+.
T Consensus 283 ~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 283 KRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877766554
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-35 Score=302.36 Aligned_cols=229 Identities=24% Similarity=0.395 Sum_probs=179.9
Q ss_pred eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
+++||+++..+ .+.....++.+|||||||++++|| |++.+.. +....++.|++++|||+++.+... ...+ +
T Consensus 250 iV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l-~~~~-~ 322 (518)
T PLN00206 250 IVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKF-ASSL-A 322 (518)
T ss_pred EEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHH-HHHh-C
Confidence 45666665544 224456779999999999999998 8877655 455567899999999999987653 3332 4
Q ss_pred CCCEEEecCC-CCCC--eEEEEEEcCchhhHHHHHHHHHHhC--CCccEEEEeCcHHHHHHHHHHHHh-CCCceEEecCC
Q 016133 105 QNPLVLKSSF-NRPN--LFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAG 178 (394)
Q Consensus 105 ~~~~~~~~~~-~~~n--l~~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~l~~~L~~-~g~~~~~~h~~ 178 (394)
.++..+.... ..++ +...+.... ...+...+..++... ...++||||+|+..++.++..|.. .|+.+..+||+
T Consensus 323 ~~~~~i~~~~~~~~~~~v~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~ 401 (518)
T PLN00206 323 KDIILISIGNPNRPNKAVKQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGE 401 (518)
T ss_pred CCCEEEEeCCCCCCCcceeEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCC
Confidence 4555554332 2222 222222222 234555666666543 235799999999999999999975 58999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHH
Q 016133 179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 258 (394)
+++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..|.+++|++++|...+.
T Consensus 402 ~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~ 481 (518)
T PLN00206 402 KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFP 481 (518)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred HHHHh
Q 016133 259 FILSK 263 (394)
Q Consensus 259 ~i~~~ 263 (394)
.+.+.
T Consensus 482 ~l~~~ 486 (518)
T PLN00206 482 ELVAL 486 (518)
T ss_pred HHHHH
Confidence 66543
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-35 Score=304.10 Aligned_cols=230 Identities=18% Similarity=0.260 Sum_probs=182.6
Q ss_pred ecChHHHHHH-Hh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHH
Q 016133 28 TATPGFMSKL-KK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 28 v~tp~~~~~l-~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
|+||+++..+ .+ ......+++|||||||++++|| |...+.. +...+| +.|+++||||++..+...+...
T Consensus 139 V~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g--f~~~i~~---il~~lp~~~~~q~ll~SATl~~~v~~l~~~~ 213 (572)
T PRK04537 139 IATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG--FIKDIRF---LLRRMPERGTRQTLLFSATLSHRVLELAYEH 213 (572)
T ss_pred EECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc--hHHHHHH---HHHhcccccCceEEEEeCCccHHHHHHHHHH
Confidence 3445544433 22 3446678999999999999988 6665554 444444 6799999999999887765555
Q ss_pred hCCCCCEEEecC-CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 102 LCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 102 l~~~~~~~~~~~-~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.......+... ....++...+... ....+...+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|+
T Consensus 214 l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~ 292 (572)
T PRK04537 214 MNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP 292 (572)
T ss_pred hcCCcEEEeccccccccceeEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 432222222211 2223333333332 33567778888888777789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i 260 (394)
+.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|..|.+++|+.+.+...+..+
T Consensus 293 ~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 293 QKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred HHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred HHh
Q 016133 261 LSK 263 (394)
Q Consensus 261 ~~~ 263 (394)
.+.
T Consensus 373 ~~~ 375 (572)
T PRK04537 373 EAY 375 (572)
T ss_pred HHH
Confidence 554
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-35 Score=297.54 Aligned_cols=235 Identities=20% Similarity=0.268 Sum_probs=184.0
Q ss_pred ccEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+|+++||+++ ..+ .....+.++++|||||||+++++| |.+.+..+.......++.+++++|||++..+.
T Consensus 214 ~~Iiv~TP~~L------l~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~ 285 (475)
T PRK01297 214 CDILVATPGRL------LDFNQRGEVHLDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVM 285 (475)
T ss_pred CCEEEECHHHH------HHHHHcCCcccccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHH
Confidence 46776666654 332 223346779999999999999987 77776665332222235789999999998877
Q ss_pred HHHHHHhCCCCCEEEecCC---CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 96 KDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~---~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
..+..++ .++..+.... ..+++...+.... ..++...+..++......++||||++++.++.+++.|...|+.+
T Consensus 286 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~ 362 (475)
T PRK01297 286 NLAKQWT--TDPAIVEIEPENVASDTVEQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINA 362 (475)
T ss_pred HHHHHhc--cCCEEEEeccCcCCCCcccEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCE
Confidence 6444433 3454443221 1223332232222 24567778888877777799999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||+|++|.|..+|+||+|||||.|+.|.+++|+..+
T Consensus 363 ~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 363 AQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHh
Q 016133 253 DRRRMEFILSK 263 (394)
Q Consensus 253 d~~~~~~i~~~ 263 (394)
|...+..+.+.
T Consensus 443 d~~~~~~~~~~ 453 (475)
T PRK01297 443 DAFQLPEIEEL 453 (475)
T ss_pred HHHHHHHHHHH
Confidence 87777666443
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-34 Score=299.70 Aligned_cols=230 Identities=20% Similarity=0.300 Sum_probs=185.1
Q ss_pred eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+|+||+++..+ .....+..+.+|||||||+++.+| |...+.. +...+| ..|+++||||+++.+.......
T Consensus 129 VVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g--f~~di~~---Il~~lp~~~q~llfSAT~p~~i~~i~~~~-- 201 (629)
T PRK11634 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG--FIEDVET---IMAQIPEGHQTALFSATMPEAIRRITRRF-- 201 (629)
T ss_pred EEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc--cHHHHHH---HHHhCCCCCeEEEEEccCChhHHHHHHHH--
Confidence 35566665444 223456779999999999999998 6655444 455555 7899999999998877643333
Q ss_pred CCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 104 LQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 104 ~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.++..+... ...+++........ ...+...|..++......++||||+|+..++.+++.|...|+.+..+||+|+
T Consensus 202 l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~ 280 (629)
T PRK11634 202 MKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMN 280 (629)
T ss_pred cCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCC
Confidence 3445443322 23344433332222 2456777888888776778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i 260 (394)
+.+|..++++|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+.+.|...++.+
T Consensus 281 q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 281 QALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhc
Q 016133 261 LSKN 264 (394)
Q Consensus 261 ~~~~ 264 (394)
.+..
T Consensus 361 e~~~ 364 (629)
T PRK11634 361 ERTM 364 (629)
T ss_pred HHHh
Confidence 6653
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=275.08 Aligned_cols=246 Identities=22% Similarity=0.365 Sum_probs=206.4
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 79 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~ 79 (394)
..|.+-+++++.| ..++ ++||+++.+| .+..++..+.|+|+||||.|+++| |.|..+++ +....|
T Consensus 331 gnR~eqie~lkrg---veii------iatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg--FEpqIrki--lldiRP 397 (629)
T KOG0336|consen 331 GNRNEQIEDLKRG---VEII------IATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG--FEPQIRKI--LLDIRP 397 (629)
T ss_pred CCchhHHHHHhcC---ceEE------eeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc--ccHHHHHH--hhhcCC
Confidence 4577788888888 4676 5677777776 456677889999999999999999 99999998 888889
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecC-CCCC---CeEEEEEEcCchhhHHHHHHHHHHhC-CCccEEEEeCc
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRP---NLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 154 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~---nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s 154 (394)
+.|+++.|||.|+.+... ..-.+++|.++-.+ .+.. .+...+ ......++++.+..+++.. ...++||||.+
T Consensus 398 DRqtvmTSATWP~~VrrL--a~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~ 474 (629)
T KOG0336|consen 398 DRQTVMTSATWPEGVRRL--AQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSR 474 (629)
T ss_pred cceeeeecccCchHHHHH--HHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 999999999999999884 44455677755433 2211 111111 2233456777777777653 45689999999
Q ss_pred HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHh
Q 016133 155 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 234 (394)
Q Consensus 155 ~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 234 (394)
+..|+.|...|.-.|+.+..+||+-.+.+|+..++.|++|+++|||||+++++|+|+|||.||+|||+|.+++.|+||+|
T Consensus 475 K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvG 554 (629)
T KOG0336|consen 475 KVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVG 554 (629)
T ss_pred hhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEEecccHHHHHHHHHh
Q 016133 235 RAGRDQLPSKSLLYYGMDDRRRMEFILSK 263 (394)
Q Consensus 235 RagR~g~~g~~i~l~~~~d~~~~~~i~~~ 263 (394)
|+||+|+.|.++.|+...|....+.+++-
T Consensus 555 rtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 555 RTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred ccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999888776654
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-34 Score=288.34 Aligned_cols=234 Identities=21% Similarity=0.332 Sum_probs=182.8
Q ss_pred ccEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+|+++||+.+ ..+ .+.....++++|||||||+++++| |+..+..+ +....++.|++++|||+++...
T Consensus 147 ~~Ivv~Tp~~l------~~~l~~~~~~l~~i~lvViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~ 216 (401)
T PTZ00424 147 VHMVVGTPGRV------YDMIDKRHLRVDDLKLFILDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEIL 216 (401)
T ss_pred CCEEEECcHHH------HHHHHhCCcccccccEEEEecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHH
Confidence 35666666543 222 223346779999999999999887 66554443 3444458999999999998876
Q ss_pred HHHHHHhCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 96 KDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
......+ .++..+... ....++............+...+..++......++||||+|++.++.+++.|.+.++.+
T Consensus 217 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~ 294 (401)
T PTZ00424 217 ELTTKFM--RDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTV 294 (401)
T ss_pred HHHHHHc--CCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcE
Confidence 6444433 334332221 22233333333333334456667777776666789999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||++++|.|...|+||+||+||.|+.|.|+++++++
T Consensus 295 ~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 374 (401)
T PTZ00424 295 SCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPD 374 (401)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHh
Q 016133 253 DRRRMEFILSK 263 (394)
Q Consensus 253 d~~~~~~i~~~ 263 (394)
|...++.+.+.
T Consensus 375 ~~~~~~~~e~~ 385 (401)
T PTZ00424 375 DIEQLKEIERH 385 (401)
T ss_pred HHHHHHHHHHH
Confidence 98888776543
No 25
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=281.47 Aligned_cols=233 Identities=23% Similarity=0.378 Sum_probs=190.7
Q ss_pred CCc-eecChHHHHHH-Hhhc--cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHH
Q 016133 24 TPE-LTATPGFMSKL-KKIH--SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 98 (394)
Q Consensus 24 tPe-~v~tp~~~~~l-~~~~--~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i 98 (394)
.|+ +|+|||++-++ .+.. ....+.++|+||||+|++.| |+..+..| ...+| +.|+++||||++.++..
T Consensus 302 ~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg--FademnEi---i~lcpk~RQTmLFSATMteeVkd-- 374 (691)
T KOG0338|consen 302 RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG--FADEMNEI---IRLCPKNRQTMLFSATMTEEVKD-- 374 (691)
T ss_pred CCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH--HHHHHHHH---HHhccccccceeehhhhHHHHHH--
Confidence 344 36788876554 3333 35678899999999999988 88876665 44444 89999999999999977
Q ss_pred HHHhCCCCCEEEecCCC---CCCeEEE---EEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 99 MESLCLQNPLVLKSSFN---RPNLFYE---VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 99 ~~~l~~~~~~~~~~~~~---~~nl~~~---v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
+..+.+..|+.+-...+ .+++..+ ++. ......-..|..++...-...+|||+.|++.|..+.-.|--.|+++
T Consensus 375 L~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~a 453 (691)
T KOG0338|consen 375 LASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-KREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKA 453 (691)
T ss_pred HHHhhcCCCeEEEeCCccccchhhhHHHheecc-ccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchh
Confidence 56678888886554432 2333322 222 1223344555566665556689999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||.|++++|.+.++.|++++++|||||+++++|+|+++|..||||.+|.+.+.|+||+||++|+|+.|.++.|+..+
T Consensus 454 gElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 454 GELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred hhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhc
Q 016133 253 DRRRMEFILSKN 264 (394)
Q Consensus 253 d~~~~~~i~~~~ 264 (394)
|++.++.+++.+
T Consensus 534 dRkllK~iik~~ 545 (691)
T KOG0338|consen 534 DRKLLKEIIKSS 545 (691)
T ss_pred cHHHHHHHHhhh
Confidence 999999998874
No 26
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=270.66 Aligned_cols=227 Identities=20% Similarity=0.238 Sum_probs=186.9
Q ss_pred ecChHHHHHHHhhc---cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLKKIH---SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~~~~---~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
|+|||++.++.... -.++++++|+||||++++.| |+.++.++..+.. ...|.++||||.++++.+...-.|.-
T Consensus 210 iATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~~ 285 (543)
T KOG0342|consen 210 IATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALKR 285 (543)
T ss_pred EeCCchHHhHhhcCCcchhhccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhcC
Confidence 67888776653322 23557899999999999999 9988777643332 37999999999999998744444433
Q ss_pred CCCEEEecCCCCC-------CeEEEEEEcCchhhHHHHHHHHHHhCCC-ccEEEEeCcHHHHHHHHHHHHhCCCceEEec
Q 016133 105 QNPLVLKSSFNRP-------NLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYH 176 (394)
Q Consensus 105 ~~~~~~~~~~~~~-------nl~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h 176 (394)
++..+....... +--|.+... ...+-.+..+|+++.+ .++||||.|...+..+++.|+...++|..+|
T Consensus 286 -d~~~v~~~d~~~~~The~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiH 361 (543)
T KOG0342|consen 286 -DPVFVNVDDGGERETHERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIH 361 (543)
T ss_pred -CceEeecCCCCCcchhhcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhh
Confidence 576665432221 122333333 3457778888877655 7999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHH
Q 016133 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 177 ~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~ 256 (394)
|++++..|..+..+|++.+..||||||+.+||+|+|+|+.||+||+|.++++|+||+||+||.|+.|.++++..|.+...
T Consensus 362 gk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 362 GKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred cCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016133 257 MEFILS 262 (394)
Q Consensus 257 ~~~i~~ 262 (394)
++.+-+
T Consensus 442 lr~LK~ 447 (543)
T KOG0342|consen 442 LRYLKK 447 (543)
T ss_pred HHHHhh
Confidence 888763
No 27
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-34 Score=258.41 Aligned_cols=230 Identities=24% Similarity=0.342 Sum_probs=190.6
Q ss_pred eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+++|||+..+| ......+...++|+||||.++. .+|.+....| ...+| +.|++++|||.|-.+...+.+.|
T Consensus 207 ~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs--~~F~~~~e~l---i~~lP~~rQillySATFP~tVk~Fm~~~l- 280 (459)
T KOG0326|consen 207 VVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS--VDFQPIVEKL---ISFLPKERQILLYSATFPLTVKGFMDRHL- 280 (459)
T ss_pred EEcCChhHHHHHhcccccchhceEEEechhhhhhc--hhhhhHHHHH---HHhCCccceeeEEecccchhHHHHHHHhc-
Confidence 67899998888 3455677788999999999987 4488876664 44555 89999999999999887665544
Q ss_pred CCCCEEEecCC----CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 104 LQNPLVLKSSF----NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 104 ~~~~~~~~~~~----~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
.+|..+..-. .--..+|..... ..++.-|..++.+..-.+.||||||.+.+|-+|..+.+.|+++.++|+.|
T Consensus 281 -~kPy~INLM~eLtl~GvtQyYafV~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM 356 (459)
T KOG0326|consen 281 -KKPYEINLMEELTLKGVTQYYAFVEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKM 356 (459)
T ss_pred -cCcceeehhhhhhhcchhhheeeech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHH
Confidence 5665554221 111224444433 34555666666655555789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHH
Q 016133 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259 (394)
Q Consensus 180 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~ 259 (394)
.++.|..++..|++|..+.||||+.+.||||++.|++|||||+|++.++|+||+||+||.|..|.++.+++.+|...+..
T Consensus 357 ~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~ 436 (459)
T KOG0326|consen 357 AQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYR 436 (459)
T ss_pred HHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhccc
Q 016133 260 ILSKNQS 266 (394)
Q Consensus 260 i~~~~~~ 266 (394)
+..+...
T Consensus 437 IE~eLGt 443 (459)
T KOG0326|consen 437 IEQELGT 443 (459)
T ss_pred HHHHhcc
Confidence 8877654
No 28
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=266.80 Aligned_cols=227 Identities=23% Similarity=0.347 Sum_probs=193.5
Q ss_pred eecChHHHHHHHhh----ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHH
Q 016133 27 LTATPGFMSKLKKI----HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 27 ~v~tp~~~~~l~~~----~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
.|+|||++.++.+. .+.+.+.++|+||||+++++| |...... |...+| +.++=+||||.+.++.+ ...
T Consensus 135 lVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg--Fe~~~n~---ILs~LPKQRRTGLFSATq~~~v~d--L~r 207 (567)
T KOG0345|consen 135 LVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG--FEASVNT---ILSFLPKQRRTGLFSATQTQEVED--LAR 207 (567)
T ss_pred EEeCchhHHHHHhchhhhccccccceEEecchHhHhccc--HHHHHHH---HHHhcccccccccccchhhHHHHH--HHH
Confidence 37889988887544 456689999999999999999 7765555 566666 67888999999999877 566
Q ss_pred hCCCCCEEEecCCC-------CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCce
Q 016133 102 LCLQNPLVLKSSFN-------RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISC 172 (394)
Q Consensus 102 l~~~~~~~~~~~~~-------~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~ 172 (394)
.|++||+.+..... .-.++|.+... ..++..+..+|.+....++|||++|...++..+..|... ..++
T Consensus 208 aGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i 284 (567)
T KOG0345|consen 208 AGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREI 284 (567)
T ss_pred hhccCceeeeecccccccCchhhcceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcE
Confidence 68899987654322 22345555544 578899999999888889999999999999999999765 6788
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||.|.+..|..+++.|.+....+|+|||+++||||+|+|++||+||+|.++..|+||+||+||.|+.|.+++|+.+.
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred EEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHh
Q 016133 253 DRRRMEFILSK 263 (394)
Q Consensus 253 d~~~~~~i~~~ 263 (394)
+...++++--.
T Consensus 365 E~aYveFl~i~ 375 (567)
T KOG0345|consen 365 EEAYVEFLRIK 375 (567)
T ss_pred HHHHHHHHHhc
Confidence 88888877544
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-33 Score=268.33 Aligned_cols=226 Identities=23% Similarity=0.345 Sum_probs=189.9
Q ss_pred ecChHHHHHHHh---hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhC
Q 016133 28 TATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 28 v~tp~~~~~l~~---~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
|+|||++..+.. ..+..++.++|+||||+++++| |...+.. +...+| ..|+++||||.+..+.. ...|.
T Consensus 195 VCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG--Fk~tL~~---Ii~~lP~~RQTLLFSATqt~svkd--LaRLs 267 (758)
T KOG0343|consen 195 VCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG--FKKTLNA---IIENLPKKRQTLLFSATQTKSVKD--LARLS 267 (758)
T ss_pred EechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHh--HHHHHHH---HHHhCChhheeeeeecccchhHHH--HHHhh
Confidence 567777665522 3345679999999999999999 7776555 556666 89999999999999987 67788
Q ss_pred CCCCEEEecC----CCCC-Ce--EEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceEE
Q 016133 104 LQNPLVLKSS----FNRP-NL--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAA 174 (394)
Q Consensus 104 ~~~~~~~~~~----~~~~-nl--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~ 174 (394)
+.+|..+... ...| ++ +|.+.. ..+++..|..+++.+...++|||+.|.+++..+++.+.+. |++...
T Consensus 268 L~dP~~vsvhe~a~~atP~~L~Q~y~~v~---l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~ 344 (758)
T KOG0343|consen 268 LKDPVYVSVHENAVAATPSNLQQSYVIVP---LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLA 344 (758)
T ss_pred cCCCcEEEEeccccccChhhhhheEEEEe---hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceee
Confidence 8898876543 2222 33 333333 2579999999999999999999999999999999999876 999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 175 ~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
+||+|++..|.+++.+|...+.-||+||++++||+|+|.|++||++|.|.++.+|+||+||++|.+..|.+++++.|.+.
T Consensus 345 L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 345 LHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred eccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred H-HHHHHHHh
Q 016133 255 R-RMEFILSK 263 (394)
Q Consensus 255 ~-~~~~i~~~ 263 (394)
. .+..+.++
T Consensus 425 E~~l~~Lq~k 434 (758)
T KOG0343|consen 425 EAMLKKLQKK 434 (758)
T ss_pred HHHHHHHHHc
Confidence 4 44555444
No 30
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=266.96 Aligned_cols=229 Identities=22% Similarity=0.368 Sum_probs=185.6
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHh
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESL 102 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~~~~i~~~l 102 (394)
++|||++..+ .....+..+.++|+||||.|++ .| |-|.++++..-.... .+.|.++||||.+..+...+...+
T Consensus 207 vaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl 284 (482)
T KOG0335|consen 207 VATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL 284 (482)
T ss_pred EecCchhhhhhhcceeehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh
Confidence 6778887777 3455567788999999999998 88 889887763333232 278999999999999887433333
Q ss_pred CCCCCE---EEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCC----Cc-----cEEEEeCcHHHHHHHHHHHHhCCC
Q 016133 103 CLQNPL---VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGI 170 (394)
Q Consensus 103 ~~~~~~---~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IVF~~s~~~~~~l~~~L~~~g~ 170 (394)
..+.. +-+.+....|+...+...... ++...|.+++.... .+ +++|||.|++.|..++.+|...++
T Consensus 285 -~~~yi~laV~rvg~~~~ni~q~i~~V~~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~ 362 (482)
T KOG0335|consen 285 -KDNYIFLAVGRVGSTSENITQKILFVNEM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY 362 (482)
T ss_pred -hccceEEEEeeeccccccceeEeeeecch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC
Confidence 33333 334567778888877776543 34455555554321 23 799999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEe
Q 016133 171 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 171 ~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
++..+||..++.+|.+.+..|++|+.++||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|..|.++.|++
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHH
Q 016133 251 MDDRRRMEFI 260 (394)
Q Consensus 251 ~~d~~~~~~i 260 (394)
..+....+.+
T Consensus 443 ~~~~~i~~~L 452 (482)
T KOG0335|consen 443 EKNQNIAKAL 452 (482)
T ss_pred cccchhHHHH
Confidence 6665544443
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.5e-32 Score=286.97 Aligned_cols=236 Identities=18% Similarity=0.174 Sum_probs=167.1
Q ss_pred ccEEEeCCceecChHHHHHH-HhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+++... .+... .....+.++++|||||||.+.. +|..+...+++|..+....+ +.|++++|||+++..
T Consensus 130 ~~IivtTPd~L~~~-~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~ 208 (742)
T TIGR03817 130 ARYVLTNPDMLHRG-ILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA 208 (742)
T ss_pred CCEEEEChHHHHHh-hccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH
Confidence 47888888866321 11000 0011246799999999999875 33333344455555555554 679999999999875
Q ss_pred HHHHHHHhCCCCCEEEecCC-CCCCeEEEEEEcC---------------chhhHHHHHHHHHHhCCCccEEEEeCcHHHH
Q 016133 95 QKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKD---------------LLDDAYADLCSVLKANGDTCAIVYCLERTTC 158 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~-~~~nl~~~v~~~~---------------~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~ 158 (394)
. . .+.+......++.... ......+.+.... ....+...+..+++. +.++||||+|++.+
T Consensus 209 ~-~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~a 284 (742)
T TIGR03817 209 A-A-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGA 284 (742)
T ss_pred H-H-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHH
Confidence 4 2 4443322222222211 1222222221111 112344556666654 46899999999999
Q ss_pred HHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHH
Q 016133 159 DELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 230 (394)
Q Consensus 159 ~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~ 230 (394)
+.++..|++. +..+..|||++++++|.+++++|++|++++||||+++++|||+|++++||||++|.+.++|+
T Consensus 285 e~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~ 364 (742)
T TIGR03817 285 ELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLW 364 (742)
T ss_pred HHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHH
Confidence 9999998763 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCceEEEEEe--cccHHHHH
Q 016133 231 QESGRAGRDQLPSKSLLYYG--MDDRRRME 258 (394)
Q Consensus 231 Qr~GRagR~g~~g~~i~l~~--~~d~~~~~ 258 (394)
||+|||||.|+.|.++++.. +.|...++
T Consensus 365 qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 365 QQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999986 34444443
No 32
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=259.40 Aligned_cols=229 Identities=22% Similarity=0.399 Sum_probs=183.0
Q ss_pred HHHHhcCCCcccEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEE
Q 016133 8 YEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 85 (394)
Q Consensus 8 ~~~l~~g~~~~~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~ 85 (394)
++.++.| +.++ ++|||++.++ .+..++.-..|+++||||++.+.| |..+.+.+..... ...|+++
T Consensus 296 l~~v~~G---vHiv------VATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF~~FK--~QRQTLL 362 (610)
T KOG0341|consen 296 LDVVRRG---VHIV------VATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIFSFFK--GQRQTLL 362 (610)
T ss_pred HHHHhcC---eeEE------EcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHHHHHh--hhhheee
Confidence 3445555 4555 7888888776 455666678899999999999999 8887777644333 3789999
Q ss_pred EeecCChhHHHHHHHHhCCCCCEEEecCCC---CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHH
Q 016133 86 LTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 86 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~ 162 (394)
||||+|..+....... +-.|+.+..+.. .-|+..++.+.. .+.++-.|.+-|++.. .+++|||..+..++.+.
T Consensus 363 FSATMP~KIQ~FAkSA--LVKPvtvNVGRAGAAsldViQevEyVk-qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 363 FSATMPKKIQNFAKSA--LVKPVTVNVGRAGAASLDVIQEVEYVK-QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIH 438 (610)
T ss_pred eeccccHHHHHHHHhh--cccceEEecccccccchhHHHHHHHHH-hhhhhhhHHHHhccCC-CceEEEeccccChHHHH
Confidence 9999999987744443 456776655422 122222222221 1345556666666554 48999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCC
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 242 (394)
++|--+|+.+..+|||-++++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..++.|+||+||+||.|+.
T Consensus 439 EYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 439 EYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKT 518 (610)
T ss_pred HHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeccc
Q 016133 243 SKSLLYYGMDD 253 (394)
Q Consensus 243 g~~i~l~~~~d 253 (394)
|.+.+|++...
T Consensus 519 GiATTfINK~~ 529 (610)
T KOG0341|consen 519 GIATTFINKNQ 529 (610)
T ss_pred ceeeeeecccc
Confidence 99999997643
No 33
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-32 Score=250.88 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=176.4
Q ss_pred eecChHHHHHHHh------hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHH
Q 016133 27 LTATPGFMSKLKK------IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 27 ~v~tp~~~~~l~~------~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~ 99 (394)
+++|||++..+.. ...+.++.++|+|||+.+++-+ |-.. |..+.+..| ..|.++||||++..+...
T Consensus 129 VvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~d~---L~~i~e~lP~~RQtLlfSATitd~i~ql-- 201 (442)
T KOG0340|consen 129 VVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FPDI---LEGIEECLPKPRQTLLFSATITDTIKQL-- 201 (442)
T ss_pred EecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hhhH---HhhhhccCCCccceEEEEeehhhHHHHh--
Confidence 4566666665532 2235679999999999999754 5554 444556666 459999999998877552
Q ss_pred HHhCCCC--CEEEecCCCC---CCe--EEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 100 ESLCLQN--PLVLKSSFNR---PNL--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 100 ~~l~~~~--~~~~~~~~~~---~nl--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
....... +.....-.+. ..+ .|.....+..+..+-.+..-.+..+.+.++||+|+..+|+.++..|+..++.+
T Consensus 202 ~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~ 281 (442)
T KOG0340|consen 202 FGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRV 281 (442)
T ss_pred hcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceee
Confidence 2122222 1222221111 112 23333332222222222222233356789999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||.|++.+|...+.+|+++.++||||||++++|+|+|.|.+|||||+|.++.+|+||+||++|+|+.|.++.++.+.
T Consensus 282 ~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~r 361 (442)
T KOG0340|consen 282 VSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQR 361 (442)
T ss_pred eehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcccC
Q 016133 253 DRRRMEFILSKNQSK 267 (394)
Q Consensus 253 d~~~~~~i~~~~~~~ 267 (394)
|++.+..+......|
T Consensus 362 Dv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 362 DVELLQAIEEEIGKK 376 (442)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999988766544
No 34
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=5.2e-32 Score=261.74 Aligned_cols=246 Identities=22% Similarity=0.298 Sum_probs=177.9
Q ss_pred cEEEeCCc-eecChHHHHHHHh-----hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHH--HhCCCCCEEEEeecC
Q 016133 19 RLLYVTPE-LTATPGFMSKLKK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATA 90 (394)
Q Consensus 19 ~il~~tPe-~v~tp~~~~~l~~-----~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~--~~~~~~~~l~lSAT~ 90 (394)
|+|--.|+ +|+|||+++.|.. +..+..+.++||||||+|.+.|| |..--.-|..|. +..+..|++.||||+
T Consensus 308 RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATl 386 (731)
T KOG0347|consen 308 RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATL 386 (731)
T ss_pred HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEe
Confidence 44444677 5789999888732 33457799999999999999997 543212222222 122368999999997
Q ss_pred ChhHH--------------------HHHHHHhCCC-CCEEEecCCCCCC---eEEEEEEcCchhhHHHHHHHHHHhCCCc
Q 016133 91 APKVQ--------------------KDVMESLCLQ-NPLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDT 146 (394)
Q Consensus 91 ~~~~~--------------------~~i~~~l~~~-~~~~~~~~~~~~n---l~~~v~~~~~~~~~~~~l~~~l~~~~~~ 146 (394)
+-... +.+.+.+++. +|.++........ +.-.....+. .++--.|..+|..+ ++
T Consensus 387 t~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ry-PG 464 (731)
T KOG0347|consen 387 TLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRY-PG 464 (731)
T ss_pred ehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeec-CC
Confidence 64322 2334444444 3344433221100 0000000000 00000011122233 45
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCH
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSM 226 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~ 226 (394)
++|||||+++.+..|+.+|+..+++...+|+.|.+++|.+.+++|++....|||||++++||+|+|+|.|||||.+|.+.
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrts 544 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTS 544 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhcccC
Q 016133 227 EAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 267 (394)
Q Consensus 227 ~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~~ 267 (394)
+-|+||+||++|++..|..+++++|.++..+.++-+....+
T Consensus 545 eiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 545 EIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred ceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999998888876654443
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.1e-31 Score=242.98 Aligned_cols=233 Identities=22% Similarity=0.304 Sum_probs=189.1
Q ss_pred eecChHHHHHH---HhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHH
Q 016133 27 LTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 27 ~v~tp~~~~~l---~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
+++|||-..+| .+......+..+|+|||+.+.+ .| |...-.+ +....| +.|+++||||....+.....+.
T Consensus 211 viGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG--~~D~S~r---I~~~lP~~~QllLFSATf~e~V~~Fa~ki 285 (477)
T KOG0332|consen 211 VIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG--FQDQSIR---IMRSLPRNQQLLLFSATFVEKVAAFALKI 285 (477)
T ss_pred eeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc--ccccchh---hhhhcCCcceEEeeechhHHHHHHHHHHh
Confidence 46788865555 2455667799999999999885 34 5554334 344455 8999999999999999877776
Q ss_pred hCCCCCEEEecC-CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 102 LCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 102 l~~~~~~~~~~~-~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.-.++..++.. ....+++.-.......+++++.|.++.....-++.||||.|++.+..++..|...|+.+..+||.|.
T Consensus 286 vpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 286 VPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred cCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccch
Confidence 665666655543 3445554433444556789999999887777778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------CHHHHHHHHhhcccCCCCceEEEEEeccc-
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD- 253 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d- 253 (394)
..+|..++++|+.|..+|||+|++++||||++-|++|||||+|- +.+.|+||+||+||.|+.|.++-+++..+
T Consensus 366 ~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 366 VEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred hHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 99999999999999999999999999999999999999999994 78999999999999999999999987654
Q ss_pred HHHHHHHHHhc
Q 016133 254 RRRMEFILSKN 264 (394)
Q Consensus 254 ~~~~~~i~~~~ 264 (394)
...++.|.+.-
T Consensus 446 ~~~mn~iq~~F 456 (477)
T KOG0332|consen 446 MNIMNKIQKHF 456 (477)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 36
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.2e-30 Score=245.76 Aligned_cols=237 Identities=20% Similarity=0.314 Sum_probs=199.5
Q ss_pred eCCc-eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 23 VTPE-LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 23 ~tPe-~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
..|| +|+||+++-++ .+.....++.++|+|||+.|.+.| |.+..+.|.. ...|+.|+|+||||++..+.....
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lar 420 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLAR 420 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHH
Confidence 5567 56799988777 445567789999999999999999 8888777633 445799999999999999988655
Q ss_pred HHhCCCCCEEE-e--cCCCCCCeEEEEEEcCchhhHHHHHHHHHHh-CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEe
Q 016133 100 ESLCLQNPLVL-K--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 175 (394)
Q Consensus 100 ~~l~~~~~~~~-~--~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~ 175 (394)
..| ..|+.+ . .+.....+...|........++..|..-|.. ...+++|||+..+..+++++..|+.+|+++..+
T Consensus 421 d~L--~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~ll 498 (731)
T KOG0339|consen 421 DIL--SDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLL 498 (731)
T ss_pred HHh--cCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeee
Confidence 555 344432 2 2233445666677777777888887776654 345789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHH
Q 016133 176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 176 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
||++.+.+|.+++.+|+.+..+|||+|++..+|+|+|+++.||+||+..+++.|.||+||+||.|..|.++.++++.|..
T Consensus 499 hgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 499 HGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcc
Q 016133 256 RMEFILSKNQ 265 (394)
Q Consensus 256 ~~~~i~~~~~ 265 (394)
..-.+.+...
T Consensus 579 fAG~LVnnLe 588 (731)
T KOG0339|consen 579 FAGHLVNNLE 588 (731)
T ss_pred HhhHHHHHHh
Confidence 7776666543
No 37
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=243.87 Aligned_cols=235 Identities=25% Similarity=0.405 Sum_probs=191.5
Q ss_pred EEEeCCc-eecChHHHHHHHh---hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhH
Q 016133 20 LLYVTPE-LTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKV 94 (394)
Q Consensus 20 il~~tPe-~v~tp~~~~~l~~---~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~ 94 (394)
+|.-.|| +|+||+.+..+.. +.....+.++||||||.++.+| |..++.. ++..+| ..|.++||||++..+
T Consensus 141 ~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG--Yeedlk~---l~~~LPr~~Q~~LmSATl~dDv 215 (569)
T KOG0346|consen 141 ALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG--YEEDLKK---LRSHLPRIYQCFLMSATLSDDV 215 (569)
T ss_pred HHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc--cHHHHHH---HHHhCCchhhheeehhhhhhHH
Confidence 4445677 5678987666522 2345679999999999999999 6666555 556666 789999999999998
Q ss_pred HHHHHHHhCCCCCEEEecCC----CCCCe-EEEEEEcCchhhHHHHHHHHHHh-CCCccEEEEeCcHHHHHHHHHHHHhC
Q 016133 95 QKDVMESLCLQNPLVLKSSF----NRPNL-FYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG 168 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~----~~~nl-~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~l~~~L~~~ 168 (394)
.. .+.|.+.+|+++.... +..++ +|.+... ..+++..+..+++- .-.+++|||+||++.|..+.-+|.+.
T Consensus 216 ~~--LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs--e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF 291 (569)
T KOG0346|consen 216 QA--LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS--EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF 291 (569)
T ss_pred HH--HHHHhccCCeEEEeccccCCCcccceEEEEEec--cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh
Confidence 77 7888999999876432 22233 3444333 46788877777764 23568999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----------------------------------ccccccCCCC
Q 016133 169 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----------------------------------AFGMGIDRKD 213 (394)
Q Consensus 169 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----------------------------------~~~~GiD~p~ 213 (394)
|++...++|.||...|..++++|..|-.++||||| -.+||||+.+
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 99999999999999999999999999999999998 2368999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHH---HHHHHHHh
Q 016133 214 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSK 263 (394)
Q Consensus 214 v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~---~~~~i~~~ 263 (394)
|..|+|||+|.+..+|+||+||++|++++|.++.|+.|.+.. .++.++..
T Consensus 372 V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 372 VSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred eeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 999999999999999999999999999999999999998877 44444443
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=8.5e-29 Score=264.19 Aligned_cols=225 Identities=21% Similarity=0.244 Sum_probs=173.5
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
+++++++.+.+|+ .+|+++||..+ .+...+.++++|||||+|++ |...+ ..+....++++
T Consensus 542 e~~~~~~~l~~g~--~dIVIGTp~ll---------~~~v~f~~L~llVIDEahrf---gv~~~------~~L~~~~~~~~ 601 (926)
T TIGR00580 542 EQNEILKELASGK--IDILIGTHKLL---------QKDVKFKDLGLLIIDEEQRF---GVKQK------EKLKELRTSVD 601 (926)
T ss_pred HHHHHHHHHHcCC--ceEEEchHHHh---------hCCCCcccCCEEEeeccccc---chhHH------HHHHhcCCCCC
Confidence 6778888999886 67898887432 33345677999999999984 42222 22444456899
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecC-CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 161 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l 161 (394)
+++||||+.+.... ....+..++.++... ..+.++...+..... ......+...+. .+++++|||++++.++.+
T Consensus 602 vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~~i~~el~--~g~qv~if~n~i~~~e~l 676 (926)
T TIGR00580 602 VLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVREAIRRELL--RGGQVFYVHNRIESIEKL 676 (926)
T ss_pred EEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHHHHHHHHH--cCCeEEEEECCcHHHHHH
Confidence 99999999888766 344566666666543 334444433332221 112233333333 356899999999999999
Q ss_pred HHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHHHHHHHHhhccc
Q 016133 162 SAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGR 238 (394)
Q Consensus 162 ~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR 238 (394)
++.|++. ++++..+||+|++++|.+++++|++|+++|||||+++++|||+|++++||++++|. +..+|+|++||+||
T Consensus 677 ~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR 756 (926)
T TIGR00580 677 ATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR 756 (926)
T ss_pred HHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCC
Confidence 9999985 78899999999999999999999999999999999999999999999999999975 78899999999999
Q ss_pred CCCCceEEEEEecc
Q 016133 239 DQLPSKSLLYYGMD 252 (394)
Q Consensus 239 ~g~~g~~i~l~~~~ 252 (394)
.|+.|.|++++.+.
T Consensus 757 ~g~~g~aill~~~~ 770 (926)
T TIGR00580 757 SKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCeEEEEEECCc
Confidence 99999999998654
No 39
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=242.91 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=185.6
Q ss_pred HHHHhcCCCcccEEEeCCceecChHHHHHHH---hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC------
Q 016133 8 YEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------ 78 (394)
Q Consensus 8 ~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~---~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~------ 78 (394)
-..|+.| +.|| |+|||++.+.. ......++.+||+||||.+++.| |..++..|-.+....
T Consensus 256 KARLRKG---iNIL------IgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~ 324 (708)
T KOG0348|consen 256 KARLRKG---INIL------IGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECK 324 (708)
T ss_pred HHHHhcC---ceEE------EcCchHHHHHHhccchheeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcc
Confidence 3456667 6788 56777765542 34446679999999999999999 788877765555321
Q ss_pred ----C-CCCEEEEeecCChhHHHHHHHHhCCCCCEEEec-----CCC----------CC-------------Ce--EEEE
Q 016133 79 ----P-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-----SFN----------RP-------------NL--FYEV 123 (394)
Q Consensus 79 ----~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-----~~~----------~~-------------nl--~~~v 123 (394)
| ..+.+++|||++..+.. ...+.+.+|+.+.. ..+ .+ ++ +|.+
T Consensus 325 ~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~v 402 (708)
T KOG0348|consen 325 DPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTV 402 (708)
T ss_pred cccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEe
Confidence 1 35689999999999877 67788888887761 111 00 11 2333
Q ss_pred EEcCch-hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC----------------------CCceEEecCCCC
Q 016133 124 RYKDLL-DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLN 180 (394)
Q Consensus 124 ~~~~~~-~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------g~~~~~~h~~l~ 180 (394)
.+.... -.....|.+..+.....++|||+.+.+.++.-+..|.+. +.++.-+||+|+
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 322110 111223333444556779999999999999988888652 234688999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 260 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i 260 (394)
+++|..+++.|....-.||.|||+++||+|+|+|++||.||+|.+.++|+||+||++|.|..|.+++|..|.+.+.++.+
T Consensus 483 QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred HHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999877766
Q ss_pred HHh
Q 016133 261 LSK 263 (394)
Q Consensus 261 ~~~ 263 (394)
...
T Consensus 563 ~~~ 565 (708)
T KOG0348|consen 563 KKH 565 (708)
T ss_pred Hhh
Confidence 544
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=4.5e-29 Score=245.01 Aligned_cols=228 Identities=21% Similarity=0.325 Sum_probs=188.0
Q ss_pred eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+|+|||++..| ....+.+.++++|+||||.+.+-+. |+.+... |...+| ..|++++|||-+...-+.+.+.
T Consensus 147 vIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s-fq~~In~---ii~slP~~rQv~a~SATYp~nLdn~Lsk~-- 220 (980)
T KOG4284|consen 147 VIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES-FQDDINI---IINSLPQIRQVAAFSATYPRNLDNLLSKF-- 220 (980)
T ss_pred EecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh-HHHHHHH---HHHhcchhheeeEEeccCchhHHHHHHHH--
Confidence 47889998888 4556678899999999999998663 7766544 666677 7899999999998887765554
Q ss_pred CCCCEEEecCCCCCCeE----EEEE-EcC-----chhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceE
Q 016133 104 LQNPLVLKSSFNRPNLF----YEVR-YKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 173 (394)
Q Consensus 104 ~~~~~~~~~~~~~~nl~----~~v~-~~~-----~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~ 173 (394)
|++|..++.+.+.+.+. |.+. ... ....+++.|..+++..+-.++||||+....|+.++.+|...|+.|.
T Consensus 221 mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~ 300 (980)
T KOG4284|consen 221 MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVT 300 (980)
T ss_pred hcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeE
Confidence 56777777665555431 2111 111 1234677788888888888899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 174 ~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
++.|.|++.+|..+++.++.-..+|||+|+..+||||-++|++|||.|+|.+.++|+||+|||||.|..|.+++|+....
T Consensus 301 ~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 301 FISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred H-HHHHHH
Q 016133 254 R-RRMEFI 260 (394)
Q Consensus 254 ~-~~~~~i 260 (394)
. +.+..+
T Consensus 381 e~~~f~~m 388 (980)
T KOG4284|consen 381 ELKGFTAM 388 (980)
T ss_pred hhhhhHHH
Confidence 3 443333
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=4e-28 Score=254.94 Aligned_cols=225 Identities=22% Similarity=0.278 Sum_probs=169.2
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
++|.++++.+.+|. .+|+++||..+. ....+.+++++||||+|++ |...|. .+.....+.
T Consensus 351 ~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~v~~~~l~lvVIDE~Hrf---g~~qr~------~l~~~~~~~ 410 (681)
T PRK10917 351 KERREILEAIASGE--ADIVIGTHALIQ---------DDVEFHNLGLVIIDEQHRF---GVEQRL------ALREKGENP 410 (681)
T ss_pred HHHHHHHHHHhCCC--CCEEEchHHHhc---------ccchhcccceEEEechhhh---hHHHHH------HHHhcCCCC
Confidence 46788899999997 789988776542 2233567999999999985 322232 233444468
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEe-cCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcH-----
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER----- 155 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~----- 155 (394)
++++||||+.+.... ....+..+...+. .+..+.++...+.........++.+...+. .+.+++|||+++
T Consensus 411 ~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~--~g~q~~v~~~~ie~s~~ 486 (681)
T PRK10917 411 HVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIA--KGRQAYVVCPLIEESEK 486 (681)
T ss_pred CEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHH--cCCcEEEEEcccccccc
Confidence 999999999887654 2333333333333 234455555544444433344455555443 456899999954
Q ss_pred ---HHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHHHH
Q 016133 156 ---TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAF 229 (394)
Q Consensus 156 ---~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y 229 (394)
..++.+++.|.+. ++++..+||+|++++|.+++++|++|+++|||||+++++|||+|++++||++++|. +.+.|
T Consensus 487 l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~l 566 (681)
T PRK10917 487 LDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQL 566 (681)
T ss_pred hhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHH
Confidence 4567788888775 57899999999999999999999999999999999999999999999999999997 58889
Q ss_pred HHHHhhcccCCCCceEEEEEe
Q 016133 230 YQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~ 250 (394)
.|++||+||.|..|.|+++++
T Consensus 567 hQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 567 HQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999995
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=5.1e-28 Score=263.35 Aligned_cols=236 Identities=21% Similarity=0.224 Sum_probs=173.6
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
+++.++++.+.+|. .+|+++||+++ .......++++|||||+|++ |. + ....+....+++
T Consensus 690 ~e~~~il~~l~~g~--~dIVVgTp~lL---------~~~v~~~~L~lLVIDEahrf---G~--~----~~e~lk~l~~~~ 749 (1147)
T PRK10689 690 KEQTQILAEAAEGK--IDILIGTHKLL---------QSDVKWKDLGLLIVDEEHRF---GV--R----HKERIKAMRADV 749 (1147)
T ss_pred HHHHHHHHHHHhCC--CCEEEECHHHH---------hCCCCHhhCCEEEEechhhc---ch--h----HHHHHHhcCCCC
Confidence 35677788888886 67998888643 22234457999999999996 42 2 122244445689
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCC-CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~ 160 (394)
++++||||+.+.+... ...++.++.++..+.. +..+...+....... ....+...+. .+++++||||+++.++.
T Consensus 750 qvLl~SATpiprtl~l--~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~-~k~~il~el~--r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 750 DILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYDSLV-VREAILREIL--RGGQVYYLYNDVENIQK 824 (1147)
T ss_pred cEEEEcCCCCHHHHHH--HHhhCCCcEEEecCCCCCCCceEEEEecCcHH-HHHHHHHHHh--cCCeEEEEECCHHHHHH
Confidence 9999999999988763 3345667776665433 333433332222111 1222222222 35689999999999999
Q ss_pred HHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC-CCHHHHHHHHhhcc
Q 016133 161 LSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAG 237 (394)
Q Consensus 161 l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p-~s~~~y~Qr~GRag 237 (394)
+++.|.+. +.++..+||+|++.+|.+++.+|++|+++|||||+++++|||+|++++||..+.. .++..|+|++||+|
T Consensus 825 la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvG 904 (1147)
T PRK10689 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 (1147)
T ss_pred HHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccC
Confidence 99999987 7889999999999999999999999999999999999999999999999955443 35678999999999
Q ss_pred cCCCCceEEEEEecc------cHHHHHHHHH
Q 016133 238 RDQLPSKSLLYYGMD------DRRRMEFILS 262 (394)
Q Consensus 238 R~g~~g~~i~l~~~~------d~~~~~~i~~ 262 (394)
|.|+.|.|++++.+. ..++++.+.+
T Consensus 905 R~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~ 935 (1147)
T PRK10689 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1147)
T ss_pred CCCCceEEEEEeCCCcccCHHHHHHHHHHHH
Confidence 999999999998643 2445554444
No 43
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=230.59 Aligned_cols=236 Identities=23% Similarity=0.382 Sum_probs=191.7
Q ss_pred cEEEeCCc-eecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 19 RLLYVTPE-LTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 19 ~il~~tPe-~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+.-..|+ +++|||+...+.+ ....+.+.++|+|||+.++..| |+..+..+ +....+++|++++|||.++++.
T Consensus 140 ~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g--fkdqI~~i--f~~lp~~vQv~l~SAT~p~~vl 215 (397)
T KOG0327|consen 140 ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG--FKDQIYDI--FQELPSDVQVVLLSATMPSDVL 215 (397)
T ss_pred hhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc--hHHHHHHH--HHHcCcchhheeecccCcHHHH
Confidence 35555677 5679998877643 3345669999999999999877 88776665 3333348999999999999998
Q ss_pred HHHHHHhCCCCCEEEecCCCCCCe---EEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 96 KDVMESLCLQNPLVLKSSFNRPNL---FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~nl---~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
. ...-.+.+|+.+....+.-.+ ........ .+.++..|..+.+ .-...+|||||++.+..+...|...++.+
T Consensus 216 ~--vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~-k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~ 290 (397)
T KOG0327|consen 216 E--VTKKFMREPVRILVKKDELTLEGIKQFYINVE-KEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTV 290 (397)
T ss_pred H--HHHHhccCceEEEecchhhhhhheeeeeeecc-ccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceE
Confidence 7 444456777766544332222 11111111 1338888888887 34578999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+|+.|.+.+|..+...|++|..+|||.|+.+++|+|+..+..||+|++|...+.|+||+||+||.|.+|.++.++...
T Consensus 291 s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~ 370 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE 370 (397)
T ss_pred EEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHh
Q 016133 253 DRRRMEFILSK 263 (394)
Q Consensus 253 d~~~~~~i~~~ 263 (394)
|...++.+.+.
T Consensus 371 d~~~lk~ie~~ 381 (397)
T KOG0327|consen 371 DVRDLKDIEKF 381 (397)
T ss_pred hHHHHHhHHHh
Confidence 99999887754
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=1.3e-27 Score=249.30 Aligned_cols=224 Identities=20% Similarity=0.256 Sum_probs=162.6
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC--
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-- 79 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-- 79 (394)
++|..+++.+.+|+ .+|+++||.++. +.....+++++||||+|++ |...|.. +....+
T Consensus 325 ~~r~~~~~~i~~g~--~~IiVgT~~ll~---------~~~~~~~l~lvVIDEaH~f---g~~qr~~------l~~~~~~~ 384 (630)
T TIGR00643 325 KRRKELLETIASGQ--IHLVVGTHALIQ---------EKVEFKRLALVIIDEQHRF---GVEQRKK------LREKGQGG 384 (630)
T ss_pred HHHHHHHHHHhCCC--CCEEEecHHHHh---------ccccccccceEEEechhhc---cHHHHHH------HHHhcccC
Confidence 35677888999986 779987776442 2234567999999999985 3222322 333333
Q ss_pred -CCCEEEEeecCChhHHHHHHHHhCCCCCEEE-ecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcH--
Q 016133 80 -DVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER-- 155 (394)
Q Consensus 80 -~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~-- 155 (394)
+.++++||||+.+..... ...+.-+...+ ..+..+..+...+.........+..+...+. .+.+++|||+++
T Consensus 385 ~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~--~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIA--KGRQAYVVYPLIEE 460 (630)
T ss_pred CCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHH--hCCcEEEEEccccc
Confidence 678999999988866542 22222122222 2233344444444333222223333333332 356899999876
Q ss_pred ------HHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CH
Q 016133 156 ------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SM 226 (394)
Q Consensus 156 ------~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~ 226 (394)
..++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+++++|||+|++++||+++.|. +.
T Consensus 461 s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gl 540 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGL 540 (630)
T ss_pred cccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCH
Confidence 4577788888764 77899999999999999999999999999999999999999999999999999997 68
Q ss_pred HHHHHHHhhcccCCCCceEEEEE
Q 016133 227 EAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 227 ~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
+.|.|++||+||.|+.|.|++++
T Consensus 541 s~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 541 SQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHhhhcccCCCCcEEEEEE
Confidence 89999999999999999999999
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=240.48 Aligned_cols=232 Identities=18% Similarity=0.231 Sum_probs=187.8
Q ss_pred ecChHHHHHHHhh----ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 28 TATPGFMSKLKKI----HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 28 v~tp~~~~~l~~~----~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+.||.++..+... .....+.++|+||||.+.+. ..|+..+..+-..+.. |++.+-+||||.+..+.+. ..+.
T Consensus 267 i~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~--~~~i 342 (593)
T KOG0344|consen 267 ISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEW--AELI 342 (593)
T ss_pred hcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHH--HHHh
Confidence 4566665555433 35567889999999999886 2377666665444443 7888899999999998873 3344
Q ss_pred CCCCEEEecCCC---CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHH-HhCCCceEEecCCC
Q 016133 104 LQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGL 179 (394)
Q Consensus 104 ~~~~~~~~~~~~---~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L-~~~g~~~~~~h~~l 179 (394)
+.++..+..+.. ...+............++..+.+++...-..+++||+.+.+.|.+|+..| .-.++.+..+||..
T Consensus 343 ~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 343 KSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGER 422 (593)
T ss_pred hccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEeccc
Confidence 445544333321 22344445555555678888999998877779999999999999999999 56689999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHH
Q 016133 180 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 259 (394)
Q Consensus 180 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~ 259 (394)
++.+|.+.+++|+.|+++||+||+++++|+|+.+|+.|||||+|.+..+|+||+||+||+|+.|.+++||+..|...++-
T Consensus 423 ~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ 502 (593)
T KOG0344|consen 423 SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRS 502 (593)
T ss_pred chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHh
Q 016133 260 ILSK 263 (394)
Q Consensus 260 i~~~ 263 (394)
+..-
T Consensus 503 iae~ 506 (593)
T KOG0344|consen 503 IAEV 506 (593)
T ss_pred HHHH
Confidence 6543
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=7.1e-28 Score=258.90 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=143.2
Q ss_pred CCCccEEEEecCCccccC--CCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhCC------CCCE-EEec
Q 016133 43 RGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNPL-VLKS 112 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~--g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~------~~~~-~~~~ 112 (394)
+..+++|||||+|.+.+. |..+...+.+ +.... ++.|++++|||+++. ..+..++.. ..+. ++..
T Consensus 170 l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r---L~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv~~ 244 (876)
T PRK13767 170 LRTVKWVIVDEIHSLAENKRGVHLSLSLER---LEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIVDA 244 (876)
T ss_pred HhcCCEEEEechhhhccCccHHHHHHHHHH---HHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEEcc
Confidence 356999999999999863 3223333333 33333 478999999999873 344555543 2222 2222
Q ss_pred CCCCCCeEEEEEEc-------C---chhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC------CCceEEec
Q 016133 113 SFNRPNLFYEVRYK-------D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GISCAAYH 176 (394)
Q Consensus 113 ~~~~~nl~~~v~~~-------~---~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~------g~~~~~~h 176 (394)
... ..+...+... . ........+..+++. ++++||||||++.|+.++..|.+. +..+..+|
T Consensus 245 ~~~-k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hH 321 (876)
T PRK13767 245 RFV-KPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHH 321 (876)
T ss_pred CCC-ccceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeee
Confidence 222 2222221110 0 112233444444443 458999999999999999999873 46799999
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC-CCCceEEEEE
Q 016133 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 249 (394)
Q Consensus 177 ~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~l~ 249 (394)
|+|++++|..+++.|++|+++|||||+++++|||+|+|++||+++.|.++.+|+||+||+||. |..+.++++.
T Consensus 322 g~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 322 SSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999986 4445555554
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=1.4e-27 Score=261.74 Aligned_cols=218 Identities=23% Similarity=0.261 Sum_probs=154.8
Q ss_pred cEEEeCCceecChHHHHHH-Hh--hccCCCccEEEEecCCcccc--CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 19 RLLYVTPELTATPGFMSKL-KK--IHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l-~~--~~~~~~l~~iVvDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
+||++|||.+ ..+ .+ ...++++++|||||+|.+.. +|..+...+.+|..+.. .+.|+|+||||+++.
T Consensus 101 dILVTTPEsL------~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~~~QrIgLSATI~n~ 172 (1490)
T PRK09751 101 DILITTPESL------YLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--TSAQRIGLSATVRSA 172 (1490)
T ss_pred CEEEecHHHH------HHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--CCCeEEEEEeeCCCH
Confidence 5666666643 322 11 12356799999999999985 57666666666554421 368999999999874
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCC--CeEEEEEEcCch------------------h----hHHHHHHHHHHhCCCccEE
Q 016133 94 VQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDLL------------------D----DAYADLCSVLKANGDTCAI 149 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~--nl~~~v~~~~~~------------------~----~~~~~l~~~l~~~~~~~~I 149 (394)
.++.++|+...+..+....... ++.+.+...+.. . .....+...+. ...++|
T Consensus 173 --eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~--~~~stL 248 (1490)
T PRK09751 173 --SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVL--RHRSTI 248 (1490)
T ss_pred --HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHh--cCCCEE
Confidence 4677888766555443222222 232222111100 0 00111222222 346899
Q ss_pred EEeCcHHHHHHHHHHHHhCC---------------------------------CceEEecCCCCHHHHHHHHHHHhcCCC
Q 016133 150 VYCLERTTCDELSAYLSAGG---------------------------------ISCAAYHAGLNDKARSSVLDDWISSRK 196 (394)
Q Consensus 150 VF~~s~~~~~~l~~~L~~~g---------------------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~ 196 (394)
|||||++.|+.++..|++.. ..+..|||+|++++|..+++.|++|++
T Consensus 249 VFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~L 328 (1490)
T PRK09751 249 VFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGEL 328 (1490)
T ss_pred EECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCc
Confidence 99999999999999997641 125789999999999999999999999
Q ss_pred eEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC-CCCceEEEE
Q 016133 197 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLY 248 (394)
Q Consensus 197 ~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~l 248 (394)
++||||+++++|||+++|++||+++.|.|+.+|+||+||+||. |..+.++++
T Consensus 329 rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 329 RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 9999999999999999999999999999999999999999996 344555544
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.95 E-value=2.1e-26 Score=244.72 Aligned_cols=221 Identities=22% Similarity=0.300 Sum_probs=156.4
Q ss_pred eecChHHHHHHHhh--ccCCCccEEEEecCCccccCCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~~~--~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+|+||+.+..+.+. .....+++|||||+|.+.+.+ +.+.+..+ ..++...++.|+++||||+++. .++..+++
T Consensus 117 iV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~ 192 (737)
T PRK02362 117 IVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLD 192 (737)
T ss_pred EEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhC
Confidence 34566655554331 224569999999999998754 55666553 4455556789999999999864 35667776
Q ss_pred CCC------CEEEecC-CCCCCeEEEEE----EcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC---
Q 016133 104 LQN------PLVLKSS-FNRPNLFYEVR----YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG--- 169 (394)
Q Consensus 104 ~~~------~~~~~~~-~~~~nl~~~v~----~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g--- 169 (394)
... |+.+... .....+.+.-. ...........+...+. .++++||||+|++.|+.++..|....
T Consensus 193 ~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~ 270 (737)
T PRK02362 193 AELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKT 270 (737)
T ss_pred CCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhc
Confidence 421 1100000 00000100000 00011223344444443 45689999999999999998886431
Q ss_pred ---------------------------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccE
Q 016133 170 ---------------------------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 216 (394)
Q Consensus 170 ---------------------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~ 216 (394)
.++.++||+|++.+|..+++.|++|.++|||||+++++|||+|.+++
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~V 350 (737)
T PRK02362 271 LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRV 350 (737)
T ss_pred CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEE
Confidence 36889999999999999999999999999999999999999999999
Q ss_pred EEE----ec-----CCCCHHHHHHHHhhcccCCCC--ceEEEEEeccc
Q 016133 217 VCH----FN-----IPKSMEAFYQESGRAGRDQLP--SKSLLYYGMDD 253 (394)
Q Consensus 217 VI~----~~-----~p~s~~~y~Qr~GRagR~g~~--g~~i~l~~~~d 253 (394)
||+ |+ .|.+..+|.||+|||||.|.. |.++++....+
T Consensus 351 VI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 351 IIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred EEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 997 76 689999999999999999965 88999987653
No 49
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=3.2e-27 Score=262.79 Aligned_cols=242 Identities=14% Similarity=0.208 Sum_probs=182.2
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCC---------CCHHHHHH---
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---------DFRPSYRK--- 70 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~---------~fr~~~~~--- 70 (394)
++.++++.+.+|. ++||++||+.+.. . . .... ...+++|||||||++++||+ +|++++..
T Consensus 166 e~~~~~~~l~~g~--~dILV~TPgrL~~-~-~---~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~ 237 (1638)
T PRK14701 166 EKEEFLERIENGD--FDILVTTAQFLAR-N-F---PEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAW 237 (1638)
T ss_pred HHHHHHHHHhcCC--CCEEEECCchhHH-h-H---HHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHH
Confidence 4556778888886 6799999885532 1 1 1111 25699999999999999988 89999864
Q ss_pred -H-------------------HHHHHhCCC-CC-EEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEc--
Q 016133 71 -L-------------------SSLRNYLPD-VP-ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-- 126 (394)
Q Consensus 71 -l-------------------~~l~~~~~~-~~-~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~-- 126 (394)
+ ......+|+ .+ ++.+|||+++. .++...+ .++..+..+..++++...+...
T Consensus 238 ~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~~l~f~v~~~~~~lr~i~~~yi~ 313 (1638)
T PRK14701 238 KIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RELLGFEVGSGRSALRNIVDVYLN 313 (1638)
T ss_pred HhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hcCeEEEecCCCCCCCCcEEEEEE
Confidence 2 111123343 34 46789998874 2233333 4566666666666544322221
Q ss_pred CchhhHHHHHHHHHHhCCCccEEEEeCcHHH---HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 127 DLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 127 ~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.....+ ..+..+++.. +..+||||+|++. |+.+++.|.+.|+++..+||+ |..++++|++|+++|||||+
T Consensus 314 ~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~ 386 (1638)
T PRK14701 314 PEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVA 386 (1638)
T ss_pred CCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEec
Confidence 111222 5677777766 4579999999875 589999999999999999995 88999999999999999995
Q ss_pred ----ccccccCCCC-ccEEEEecCCC---CHHHHHHHH-------------hhcccCCCCceEEEEEecccHHHHHHHHH
Q 016133 204 ----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRDQLPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 204 ----~~~~GiD~p~-v~~VI~~~~p~---s~~~y~Qr~-------------GRagR~g~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
+++||||+|+ |++|||||+|+ +++.|+|.. ||+||+|.++.+++.+...+...++.+++
T Consensus 387 s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 387 TYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred CCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 7889999999 99999999999 999998887 99999999999998888888888887776
Q ss_pred h
Q 016133 263 K 263 (394)
Q Consensus 263 ~ 263 (394)
.
T Consensus 467 ~ 467 (1638)
T PRK14701 467 D 467 (1638)
T ss_pred c
Confidence 4
No 50
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.7e-28 Score=230.78 Aligned_cols=235 Identities=21% Similarity=0.298 Sum_probs=173.4
Q ss_pred ecChHHHHHHHh---hccCCCccEEEEecCCcccc-----CC--------CC-------------CHHHHHHHHHHHHh-
Q 016133 28 TATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS-----WG--------HD-------------FRPSYRKLSSLRNY- 77 (394)
Q Consensus 28 v~tp~~~~~l~~---~~~~~~l~~iVvDEaH~l~~-----~g--------~~-------------fr~~~~~l~~l~~~- 77 (394)
|+|||++-++.+ .+.+.++.++||||||++++ |= ++ +.+.-.-+..+...
T Consensus 275 VaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~ 354 (620)
T KOG0350|consen 275 VATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKL 354 (620)
T ss_pred EcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhc
Confidence 678887766533 44567799999999999885 31 10 00000111112222
Q ss_pred ---CCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC------CCCC-e-EEEEEEcCchhhHHHHHHHHHHhCCCc
Q 016133 78 ---LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDT 146 (394)
Q Consensus 78 ---~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------~~~n-l-~~~v~~~~~~~~~~~~l~~~l~~~~~~ 146 (394)
.|....+.+|||++..-.. ...+.+..|..+.... ..|. + ++.+... ...+...+..++...+..
T Consensus 355 ~~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~--~~~kpl~~~~lI~~~k~~ 430 (620)
T KOG0350|consen 355 GKLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE--PKFKPLAVYALITSNKLN 430 (620)
T ss_pred CCcCchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeecc--cccchHhHHHHHHHhhcc
Confidence 2233467888888766554 4556666665443321 1111 1 1111111 123445667777777788
Q ss_pred cEEEEeCcHHHHHHHHHHHH----hCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC
Q 016133 147 CAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 222 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~ 222 (394)
++|+|+++.+.+..++..|+ +...++..|.|+++.+.|.+.+++|..|++++|||||+++||||+.+|+.|||||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 99999999999999999987 33567788999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhccc
Q 016133 223 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 223 p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
|.+...|+||+||+||+|+.|.|+.+....+...+.+++++...
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987654
No 51
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.7e-27 Score=243.88 Aligned_cols=244 Identities=21% Similarity=0.371 Sum_probs=193.3
Q ss_pred HHHHHHhcCCCcccEEEeCCceecChHHHHHH--Hh---hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCC
Q 016133 6 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 80 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l--~~---~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~ 80 (394)
+-+..++.| ..|+ |+|||+..++ .+ +....++.++|+||||.+.+.| |.|..-.| +....|.
T Consensus 480 ~qiaelkRg---~eIv------V~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpd 546 (997)
T KOG0334|consen 480 QQIAELKRG---AEIV------VCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPD 546 (997)
T ss_pred HHHHHHhcC---CceE------EeccchhhhhHhhcCCccccccccceeeechhhhhheec--cCcccchH--Hhhcchh
Confidence 345556666 3455 5555655443 22 3334456699999999999988 88876664 4455679
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHh-CCCccEEEEeCcHH
Q 016133 81 VPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERT 156 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~ 156 (394)
.|++++|||.+..+.......+. .|+.+... ..-..+...+........++..|..+|.. ....++||||.+..
T Consensus 547 rQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 547 RQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 99999999999997764444444 55543322 22234555555555567888888888864 35679999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhc
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 236 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 236 (394)
.|..+.+.|.+.|+++..+||+.++.+|..+++.|++|.+.+||||+.+++|+|++++.+||||++|.-.+.|+||+||+
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRT 704 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRT 704 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 237 GRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 237 gR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
||.|+.|.|++|..+++....-.|.+..
T Consensus 705 gragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 705 GRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999997766655555443
No 52
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=1.4e-26 Score=226.84 Aligned_cols=199 Identities=17% Similarity=0.142 Sum_probs=134.0
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC-CCEEEecCCCCCCeEEEE-
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEV- 123 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~~~nl~~~v- 123 (394)
.++||+||||.+.+++..+ +..+..... ..+.|+++||||+++.+... ....... .+.............+.+
T Consensus 125 ~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~~~~i~~SATlp~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (358)
T TIGR01587 125 NSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DNDVPILLMSATLPKFLKEY-AEKIGYVEFNEPLDLKEERRFERHRFI 199 (358)
T ss_pred CCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcCCCEEEEecCchHHHHHH-HhcCCCcccccCCCCccccccccccce
Confidence 4789999999999865322 333322222 24789999999998665432 2222221 111111110000001111
Q ss_pred EEcCchhhHHHHHHHHHHh-CCCccEEEEeCcHHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHH----HHHHHhcCCC
Q 016133 124 RYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRK 196 (394)
Q Consensus 124 ~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~ 196 (394)
........+...+..+++. ..++++||||+|++.++.++..|.+.+. .+..+||++++.+|.+ +++.|++|+.
T Consensus 200 ~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~ 279 (358)
T TIGR01587 200 KIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK 279 (358)
T ss_pred eeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC
Confidence 1111111233444444443 2456899999999999999999998766 4999999999999976 4889999999
Q ss_pred eEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCc----eEEEEEecc
Q 016133 197 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS----KSLLYYGMD 252 (394)
Q Consensus 197 ~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g----~~i~l~~~~ 252 (394)
.|||||+++++|+|++ +++||++..| +++|+||+||+||.|+.. ..+++....
T Consensus 280 ~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 280 FVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred eEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999999995 8888888766 789999999999988543 566665543
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=233.33 Aligned_cols=221 Identities=25% Similarity=0.317 Sum_probs=173.2
Q ss_pred ccEEEeCCcee----cChHHHHHHHhhccCCCccEEEEecCCcccc--CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 18 LRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 18 ~~il~~tPe~v----~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~--~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
.+||++|||.+ ..+.+...| .++.++||||.|.+.. .|.... ..|..++...++.|.|+||||..
T Consensus 124 PdILiTTPEsL~lll~~~~~r~~l------~~vr~VIVDEiHel~~sKRG~~Ls---l~LeRL~~l~~~~qRIGLSATV~ 194 (814)
T COG1201 124 PHILITTPESLAILLNSPKFRELL------RDVRYVIVDEIHALAESKRGVQLA---LSLERLRELAGDFQRIGLSATVG 194 (814)
T ss_pred CcEEEeChhHHHHHhcCHHHHHHh------cCCcEEEeehhhhhhccccchhhh---hhHHHHHhhCcccEEEeehhccC
Confidence 58999999932 334433333 4589999999999874 554333 33555666666899999999988
Q ss_pred hhHHHHHHHHhCCCC-CEEEecCCCCCCeEEEEEEcCch--------hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHH
Q 016133 92 PKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRYKDLL--------DDAYADLCSVLKANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 92 ~~~~~~i~~~l~~~~-~~~~~~~~~~~nl~~~v~~~~~~--------~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~ 162 (394)
+.. ++.++|.... +..+.......+..+.+...... ...+..+.++++++. .+|||+||+..++.++
T Consensus 195 ~~~--~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 195 PPE--EVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLA 270 (814)
T ss_pred CHH--HHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHH
Confidence 654 5578887765 44444333334444444433221 346677788888765 7999999999999999
Q ss_pred HHHHhCC-CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC-C
Q 016133 163 AYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-Q 240 (394)
Q Consensus 163 ~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g 240 (394)
..|++.+ ..+..+||+++.+.|..+.++|++|+++++|||+.++.|||+.+|+.|||++.|+++..++||+||+|+. |
T Consensus 271 ~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 271 FRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLG 350 (814)
T ss_pred HHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccC
Confidence 9999986 8999999999999999999999999999999999999999999999999999999999999999999964 6
Q ss_pred CCceEEEEEec
Q 016133 241 LPSKSLLYYGM 251 (394)
Q Consensus 241 ~~g~~i~l~~~ 251 (394)
..+.++++...
T Consensus 351 ~~Skg~ii~~~ 361 (814)
T COG1201 351 EVSKGIIIAED 361 (814)
T ss_pred CcccEEEEecC
Confidence 66777777655
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=3.4e-25 Score=234.39 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=156.0
Q ss_pred eecChHHHHH-HHhhccCCCccEEEEecCCc-cccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~-l~~~~~~~~l~~iVvDEaH~-l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
.++|||++.. +.+...+..+++|||||+|. .++- ||--.+ +..+... .++.++++||||++.... .+.++
T Consensus 94 ~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~l--l~~i~~~lr~dlqlIlmSATl~~~~l---~~~l~ 166 (819)
T TIGR01970 94 EVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDA--DLGLAL--ALDVQSSLREDLKILAMSATLDGERL---SSLLP 166 (819)
T ss_pred EEECCcHHHHHHhhCcccccCCEEEEeccchhhhcc--chHHHH--HHHHHHhcCCCceEEEEeCCCCHHHH---HHHcC
Confidence 3456665544 34445577899999999995 4432 232222 2233333 358899999999997653 33332
Q ss_pred CCCCEEEecCCCCC-CeEEEEEEc-Cch-hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHh---CCCceEEecC
Q 016133 104 LQNPLVLKSSFNRP-NLFYEVRYK-DLL-DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHA 177 (394)
Q Consensus 104 ~~~~~~~~~~~~~~-nl~~~v~~~-~~~-~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~ 177 (394)
..+.+...+...| ..+|..... ... ......+..+++.. .+.+|||++++++++.+++.|.+ .++.+..+||
T Consensus 167 -~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~-~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg 244 (819)
T TIGR01970 167 -DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASE-TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYG 244 (819)
T ss_pred -CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 2233322221111 122211111 000 11123344455443 56899999999999999999987 4788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------------CHHHHHHHHhhcccC
Q 016133 178 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRD 239 (394)
Q Consensus 178 ~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~ 239 (394)
+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||++++|+ |-++|.||+|||||.
T Consensus 245 ~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 245 ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999985 345799999999999
Q ss_pred CCCceEEEEEecccHHHHH
Q 016133 240 QLPSKSLLYYGMDDRRRME 258 (394)
Q Consensus 240 g~~g~~i~l~~~~d~~~~~ 258 (394)
.+|.|+.+|+..+...+.
T Consensus 325 -~~G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 325 -EPGVCYRLWSEEQHQRLP 342 (819)
T ss_pred -CCCEEEEeCCHHHHHhhh
Confidence 799999999987765443
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=5.3e-25 Score=227.99 Aligned_cols=206 Identities=17% Similarity=0.248 Sum_probs=145.5
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCC-CCCe
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNL 119 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~nl 119 (394)
.+..+++|||||||.++..+. + . +.-++...+ ..++++||||++.++.. +.+.+ .++..+..+.. ..++
T Consensus 288 ~L~~v~~VVIDEaHEr~~~~D-l---l--L~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV 358 (675)
T PHA02653 288 KLFDYGTVIIDEVHEHDQIGD-I---I--IAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPI 358 (675)
T ss_pred ccccCCEEEccccccCccchh-H---H--HHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCe
Confidence 346699999999999987662 1 1 111323323 24899999999877643 44444 35555544321 1222
Q ss_pred EEEEEEcC--------chhhHHHHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhC--CCceEEecCCCCHHHHHH
Q 016133 120 FYEVRYKD--------LLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSS 186 (394)
Q Consensus 120 ~~~v~~~~--------~~~~~~~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~ 186 (394)
........ ........+...+.. ..++++|||++++++++.+++.|.+. ++.+..+||+|++. ++
T Consensus 359 ~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq 436 (675)
T PHA02653 359 SEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DE 436 (675)
T ss_pred EEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HH
Confidence 11111000 001111122222322 23468999999999999999999987 78999999999975 46
Q ss_pred HHHHH-hcCCCeEEEeccccccccCCCCccEEEEec---CCC---------CHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 187 VLDDW-ISSRKQVVVATVAFGMGIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 187 ~~~~f-~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~---~p~---------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
.+++| ++|+.+|||||+++++|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.+|++++
T Consensus 437 ~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 437 ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 67777 689999999999999999999999999999 665 889999999999999 7999999999877
Q ss_pred HHHHHH
Q 016133 254 RRRMEF 259 (394)
Q Consensus 254 ~~~~~~ 259 (394)
...+..
T Consensus 516 ~~pI~r 521 (675)
T PHA02653 516 LKPIKR 521 (675)
T ss_pred hHHHHH
Confidence 654433
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=9.2e-25 Score=231.72 Aligned_cols=222 Identities=23% Similarity=0.283 Sum_probs=151.7
Q ss_pred ecChHHHHHHHhh--ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l~~~--~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
|+||+.+..+.+. ....++++|||||+|.+.+++ +.+.+..+ +....++.|++++|||+++. .++..+++..
T Consensus 119 V~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~--rg~~le~i--l~~l~~~~qiI~lSATl~n~--~~la~wl~~~ 192 (720)
T PRK00254 119 IATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD--RGATLEMI--LTHMLGRAQILGLSATVGNA--EELAEWLNAE 192 (720)
T ss_pred EEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc--chHHHHHH--HHhcCcCCcEEEEEccCCCH--HHHHHHhCCc
Confidence 4455554444321 234679999999999998876 34444444 22333478999999999763 4667777643
Q ss_pred CCEEEecCCCCC-----CeEEE--EEEcCc-----hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-----
Q 016133 106 NPLVLKSSFNRP-----NLFYE--VRYKDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----- 168 (394)
Q Consensus 106 ~~~~~~~~~~~~-----nl~~~--v~~~~~-----~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~----- 168 (394)
. +. +..+| .+.+. +..... .......+.+.++. ++++||||+|++.|+.++..|.+.
T Consensus 193 ~---~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~ 266 (720)
T PRK00254 193 L---VV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFL 266 (720)
T ss_pred c---cc-CCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhc
Confidence 1 11 11111 11110 000110 01122334444443 568999999999999888766421
Q ss_pred ----------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEE-
Q 016133 169 ----------------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH- 219 (394)
Q Consensus 169 ----------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~- 219 (394)
..++.++||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~ 346 (720)
T PRK00254 267 TKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRD 346 (720)
T ss_pred CchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECC
Confidence 235899999999999999999999999999999999999999999999994
Q ss_pred ------ecCCC-CHHHHHHHHhhcccCC--CCceEEEEEecccH-HHHHHHH
Q 016133 220 ------FNIPK-SMEAFYQESGRAGRDQ--LPSKSLLYYGMDDR-RRMEFIL 261 (394)
Q Consensus 220 ------~~~p~-s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~-~~~~~i~ 261 (394)
++.|. +..+|+||+|||||.| ..|.++++....+. ..++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 347 TKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred ceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHH
Confidence 55543 6789999999999976 66899999876553 3344443
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=2.1e-24 Score=227.80 Aligned_cols=228 Identities=23% Similarity=0.245 Sum_probs=150.8
Q ss_pred eecChHHHHHHHhh--ccCCCccEEEEecCCccccCCCCCHHHHHHHH-HHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS-SLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~~~--~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~-~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+++||+.+..+.+. ....++++|||||||++.+.+ +-+.+..+. .++...++.+++++|||+++. .++.++++
T Consensus 115 iv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~ 190 (674)
T PRK01172 115 VILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLN 190 (674)
T ss_pred EEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhC
Confidence 34555554444221 224569999999999998754 344555542 233344689999999999764 45677775
Q ss_pred CCCCEEEecCCCCCCeEEEEEE-----cCchhhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhC--------
Q 016133 104 LQNPLVLKSSFNRPNLFYEVRY-----KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-------- 168 (394)
Q Consensus 104 ~~~~~~~~~~~~~~nl~~~v~~-----~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~-------- 168 (394)
... +........+...+.. .+........+..++.. ..++++||||+|++.++.++..|.+.
T Consensus 191 ~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~ 267 (674)
T PRK01172 191 ASL---IKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFK 267 (674)
T ss_pred CCc---cCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccc
Confidence 431 1111111111111111 00000000112222221 24568999999999999999988653
Q ss_pred -----------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec---------C
Q 016133 169 -----------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN---------I 222 (394)
Q Consensus 169 -----------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~---------~ 222 (394)
..++.++||+|++++|..+++.|++|.++|||||+++++|+|+|+..+|| .+ .
T Consensus 268 ~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~ 346 (674)
T PRK01172 268 VSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIR 346 (674)
T ss_pred ccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCce
Confidence 12478899999999999999999999999999999999999999975555 33 2
Q ss_pred CCCHHHHHHHHhhcccCCC--CceEEEEEecc-cHHHHHHHHH
Q 016133 223 PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILS 262 (394)
Q Consensus 223 p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~-d~~~~~~i~~ 262 (394)
|.+..+|.||+|||||.|. .|.++++.... +...+++++.
T Consensus 347 ~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 347 YLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred eCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc
Confidence 5689999999999999984 56677776543 3566666663
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=6.1e-25 Score=232.83 Aligned_cols=218 Identities=18% Similarity=0.239 Sum_probs=154.7
Q ss_pred eecChHHHHHH-HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
.++|||++.++ .+...+..+++|||||+|..+-. .|+.- ..+..+... .++.++++||||++.... .+.+.
T Consensus 97 ~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~-~Dl~L--~ll~~i~~~lr~~lqlilmSATl~~~~l---~~~~~- 169 (812)
T PRK11664 97 EVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ-ADLAL--ALLLDVQQGLRDDLKLLIMSATLDNDRL---QQLLP- 169 (812)
T ss_pred EEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc-cchHH--HHHHHHHHhCCccceEEEEecCCCHHHH---HHhcC-
Confidence 45677766543 44456788999999999974311 12221 112233333 357899999999987643 33332
Q ss_pred CCCEEEecCCCCC-CeEEEEEEcCchhhHH-----HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHh---CCCceEEe
Q 016133 105 QNPLVLKSSFNRP-NLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA---GGISCAAY 175 (394)
Q Consensus 105 ~~~~~~~~~~~~~-nl~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~ 175 (394)
..+.+...+...| ..+|.. ... ..++ ..+..++.. ..+.+|||++++++++.+++.|.+ .++.+..+
T Consensus 170 ~~~~I~~~gr~~pV~~~y~~--~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~L 245 (812)
T PRK11664 170 DAPVIVSEGRSFPVERRYQP--LPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPL 245 (812)
T ss_pred CCCEEEecCccccceEEecc--Cch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEe
Confidence 2233322221111 112211 111 1122 234444443 356899999999999999999987 57889999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------------CHHHHHHHHhhcc
Q 016133 176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAG 237 (394)
Q Consensus 176 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GRag 237 (394)
||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||++++|+ |-++|.||+||||
T Consensus 246 hg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 246 YGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred eCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 9999999999999999999999999999999999999999999988875 3468999999999
Q ss_pred cCCCCceEEEEEecccHHH
Q 016133 238 RDQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 238 R~g~~g~~i~l~~~~d~~~ 256 (394)
|. .+|.|+.+|+..+...
T Consensus 326 R~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 326 RL-EPGICLHLYSKEQAER 343 (812)
T ss_pred CC-CCcEEEEecCHHHHhh
Confidence 99 6999999999876543
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.93 E-value=7.6e-25 Score=213.32 Aligned_cols=226 Identities=25% Similarity=0.325 Sum_probs=167.5
Q ss_pred CcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
++.+|++.|-| |+-..|..-...++++.+||||+|.+-+.....|-+ --++.++..+|+.|+|+||||..+.-
T Consensus 314 ~dADIIVGTYE-----GiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLd-GLI~RLr~l~~~AQ~i~LSATVgNp~- 386 (830)
T COG1202 314 PDADIIVGTYE-----GIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLD-GLIGRLRYLFPGAQFIYLSATVGNPE- 386 (830)
T ss_pred CCCcEEEeech-----hHHHHHHcCCcccccceEEeeeeeeccchhcccchh-hHHHHHHHhCCCCeEEEEEeecCChH-
Confidence 35566655555 222233333667889999999999988633223433 35778889999999999999987664
Q ss_pred HHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHh--------CCCccEEEEeCcHHHHHHHHHHHHh
Q 016133 96 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--------NGDTCAIVYCLERTTCDELSAYLSA 167 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~--------~~~~~~IVF~~s~~~~~~l~~~L~~ 167 (394)
.+.+.|+..- +.+... .-.+..++.......++...+..+.+. .-.+++|||++|++.|..++..|..
T Consensus 387 -elA~~l~a~l-V~y~~R--PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~ 462 (830)
T COG1202 387 -ELAKKLGAKL-VLYDER--PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG 462 (830)
T ss_pred -HHHHHhCCee-EeecCC--CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc
Confidence 3467776642 222211 112333444444445666666666543 1246899999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEE---EecCC-CCHHHHHHHHhhcccCC--C
Q 016133 168 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC---HFNIP-KSMEAFYQESGRAGRDQ--L 241 (394)
Q Consensus 168 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI---~~~~p-~s~~~y~Qr~GRagR~g--~ 241 (394)
+|+++.+||+||+..+|..+...|.++++.++|+|.+++.|+|+|.-.+|. -++.- .|+.+|.|+.|||||.+ .
T Consensus 463 kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHd 542 (830)
T COG1202 463 KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHD 542 (830)
T ss_pred CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCccc
Confidence 999999999999999999999999999999999999999999999766543 23333 48999999999999987 5
Q ss_pred CceEEEEEecc
Q 016133 242 PSKSLLYYGMD 252 (394)
Q Consensus 242 ~g~~i~l~~~~ 252 (394)
.|.++++..+.
T Consensus 543 rGkVyllvepg 553 (830)
T COG1202 543 RGKVYLLVEPG 553 (830)
T ss_pred CceEEEEecCC
Confidence 68888887664
No 60
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.93 E-value=8.8e-25 Score=236.11 Aligned_cols=220 Identities=19% Similarity=0.218 Sum_probs=156.1
Q ss_pred eecChHHHHHH-HhhccCCCccEEEEecCCc-cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMSKL-KKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
+++|||++... .....+..+++|||||||. .++. ||... .|..+....|+.++|+||||++.+ .+.+.+ .
T Consensus 167 ~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg--~Lk~lL~~rpdlKvILmSATid~e---~fs~~F-~ 238 (1294)
T PRK11131 167 KLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI--DFILG--YLKELLPRRPDLKVIITSATIDPE---RFSRHF-N 238 (1294)
T ss_pred EEEChHHHHHHHhcCCccccCcEEEecCcccccccc--chHHH--HHHHhhhcCCCceEEEeeCCCCHH---HHHHHc-C
Confidence 46678766554 3334467899999999995 5553 46543 244455555789999999999864 334444 3
Q ss_pred CCCEEEecCCCCC-CeEEEEEEcCc---hhhHHHHHHHHH---HhCCCccEEEEeCcHHHHHHHHHHHHhCCCc---eEE
Q 016133 105 QNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGIS---CAA 174 (394)
Q Consensus 105 ~~~~~~~~~~~~~-nl~~~v~~~~~---~~~~~~~l~~~l---~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~---~~~ 174 (394)
..|.+...+...| .++|....... ..+.+..+...+ ...+.+.+|||+++..+++.+++.|.+.+++ +..
T Consensus 239 ~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~Vlp 318 (1294)
T PRK11131 239 NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILP 318 (1294)
T ss_pred CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEee
Confidence 3444322222111 22332211111 122333333322 2345678999999999999999999988765 678
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC---------------C---CCHHHHHHHHhhc
Q 016133 175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------------P---KSMEAFYQESGRA 236 (394)
Q Consensus 175 ~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~---------------p---~s~~~y~Qr~GRa 236 (394)
+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++|. | .|.++|.||+|||
T Consensus 319 Lhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRA 396 (1294)
T PRK11131 319 LYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC 396 (1294)
T ss_pred cccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhcccc
Confidence 9999999999999886 578899999999999999999999999863 3 4668999999999
Q ss_pred ccCCCCceEEEEEecccHHHH
Q 016133 237 GRDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 237 gR~g~~g~~i~l~~~~d~~~~ 257 (394)
||. .+|.|+.+|+..+...+
T Consensus 397 GR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 397 GRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred CCC-CCcEEEEeCCHHHHHhh
Confidence 999 69999999998876543
No 61
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=5.5e-24 Score=207.87 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=131.0
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC--------
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------- 114 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-------- 114 (394)
..+++||+||+|.+..|+.++...+..+..+... ..+.+++++|||+++.+...+...+.+..+.....+.
T Consensus 144 ~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 144 TKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred cCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCCh
Confidence 5699999999999998876666544333333222 2257999999999998887766653344443322221
Q ss_pred ----C------C---CCeEEEEEEcCc-hhhHHHHH----HHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC--CceEE
Q 016133 115 ----N------R---PNLFYEVRYKDL-LDDAYADL----CSVLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAA 174 (394)
Q Consensus 115 ----~------~---~nl~~~v~~~~~-~~~~~~~l----~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g--~~~~~ 174 (394)
. + |++.+.+..... ....+..+ .+.++...++++||||+|++.++.++..|++.+ +.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~ 303 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGR 303 (357)
T ss_pred hhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEe
Confidence 0 1 345444443221 11112222 222333456789999999999999999999864 57888
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcc
Q 016133 175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 175 ~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
+||.+++.+|.+. ++..|||||+++++|||+|++ +|| ++ |.+.++|+||+||+|
T Consensus 304 l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 304 ITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999988654 478999999999999999987 566 45 899999999999997
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.92 E-value=2.4e-24 Score=224.75 Aligned_cols=194 Identities=16% Similarity=0.171 Sum_probs=135.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC---CC
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NR 116 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~---~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~ 116 (394)
.+++.+||+|||| ++.| |......|.......+ +.|+++||||++..+... ...+ +.++..+.... ..
T Consensus 169 L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l-~~~~-~~~p~~i~V~~~~l~a 242 (844)
T TIGR02621 169 LGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDR-TTLL-SAEDYKHPVLKKRLAA 242 (844)
T ss_pred hccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHH-HHHH-ccCCceeecccccccc
Confidence 4678999999999 4555 8888777644322122 268999999999876653 2222 22333222211 11
Q ss_pred CCeEEEEEEcCchhhHH----HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHH-----HH
Q 016133 117 PNLFYEVRYKDLLDDAY----ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS-----SV 187 (394)
Q Consensus 117 ~nl~~~v~~~~~~~~~~----~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~-----~~ 187 (394)
+++...+ ... ...+. ..+..++. ..++++||||||++.|+.+++.|.+.++ ..+||+|++.+|. .+
T Consensus 243 ~ki~q~v-~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 243 KKIVKLV-PPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cceEEEE-ecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 2222211 111 12222 22333333 3456899999999999999999999886 8999999999999 78
Q ss_pred HHHHhc----CC-------CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCc-eEEEEEe
Q 016133 188 LDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS-KSLLYYG 250 (394)
Q Consensus 188 ~~~f~~----g~-------~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g-~~i~l~~ 250 (394)
+++|++ |+ ..|||||+++++|||++. ++||++..| +++|+||+||+||.|+.+ ..+.++.
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 999987 44 689999999999999987 888887766 699999999999999853 3344443
No 63
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.92 E-value=1.8e-23 Score=222.85 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHH-hCCCceEEecCCCCHHHHHHHHHHHhcC--CCeEEEeccccccc
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMG 208 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~~~~~G 208 (394)
+.+.|..+++...+.|+||||+++..+..+++.|. ..|+++..+||+|+..+|.++++.|+++ ..+|||||+++++|
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 45567777777777899999999999999999994 6699999999999999999999999974 59999999999999
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEec
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
+|++.+++|||||+|.++..|.||+||+||.|+.+.+.+++..
T Consensus 560 lNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 560 RNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred CCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 9999999999999999999999999999999999887666643
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.3e-23 Score=199.59 Aligned_cols=113 Identities=27% Similarity=0.376 Sum_probs=102.6
Q ss_pred hCCCccEEEEeCcHHHHHHHHHHHHhCCCceE-E--------ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC
Q 016133 142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCA-A--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 212 (394)
Q Consensus 142 ~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~-~--------~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 212 (394)
..++.++|||++.+++++.++.+|.+.|..+. . ...||+++++.+++++|++|+.+|||||++.+.|+|+|
T Consensus 363 k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp 442 (542)
T COG1111 363 KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIP 442 (542)
T ss_pred cCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCC
Confidence 34566899999999999999999999988774 2 33589999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHH
Q 016133 213 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 213 ~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
++++||.|++-.|...++||.||+||. ++|.+++++..+...
T Consensus 443 ~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 443 EVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred cccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 999999999999999999999999998 789999999887443
No 65
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.8e-25 Score=208.46 Aligned_cols=233 Identities=20% Similarity=0.252 Sum_probs=185.6
Q ss_pred EEEeCCc-eecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHH
Q 016133 20 LLYVTPE-LTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ 95 (394)
Q Consensus 20 il~~tPe-~v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~ 95 (394)
.|-..|+ +++|||++..+. -...+..+.|+|+|||+.+.+.| |.+. +..+....| +.|+++||||+|....
T Consensus 136 ~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg--fqeq---l~e~l~rl~~~~QTllfSatlp~~lv 210 (529)
T KOG0337|consen 136 LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG--FQEQ---LHEILSRLPESRQTLLFSATLPRDLV 210 (529)
T ss_pred HhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh--hHHH---HHHHHHhCCCcceEEEEeccCchhhH
Confidence 3333566 345777665542 12345668999999999999988 6655 444555666 7899999999999877
Q ss_pred HHHHHHhCCCCCEEEecCCC---CCCeEEEEEEcCchhhHHHHHHHHHHhC-CCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 96 KDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~---~~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
. ...-|+.+|..++.... .+++...... ....++...|..++... ...+++|||.|..+++.+...|...|+.
T Consensus 211 ~--fakaGl~~p~lVRldvetkise~lk~~f~~-~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~ 287 (529)
T KOG0337|consen 211 D--FAKAGLVPPVLVRLDVETKISELLKVRFFR-VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGE 287 (529)
T ss_pred H--HHHccCCCCceEEeehhhhcchhhhhheee-eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCC
Confidence 7 55668888887763321 1122111111 12256777788777654 3457999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEec
Q 016133 172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 172 ~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
+..++|.|++..|.....+|..++..++|.|+.+.+|+|+|-...|||||+|.+..-|+||+||+.|+|+.|.++.++.+
T Consensus 288 ~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~ 367 (529)
T KOG0337|consen 288 GSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAS 367 (529)
T ss_pred ccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHH
Q 016133 252 DDRRRMEFI 260 (394)
Q Consensus 252 ~d~~~~~~i 260 (394)
.|...+-.+
T Consensus 368 ~~~~yl~DL 376 (529)
T KOG0337|consen 368 TDDPYLLDL 376 (529)
T ss_pred ccchhhhhh
Confidence 888776544
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=1.2e-23 Score=229.70 Aligned_cols=213 Identities=20% Similarity=0.291 Sum_probs=150.9
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCC---------CH--------
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD---------FR-------- 65 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~---------fr-------- 65 (394)
++.+..+.+.++. .+|+++|| +++..+........+++|||||||++++|+++ |.
T Consensus 167 ek~~~~~~l~~~~--~~IlV~Tp------~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~ 238 (1176)
T PRK09401 167 EKEEFLERLKEGD--FDILVTTS------QFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAM 238 (1176)
T ss_pred HHHHHHHHHhcCC--CCEEEECH------HHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHH
Confidence 3455566666665 56875555 45544433445566999999999999987643 53
Q ss_pred ----------HHHHHHHHHHHhCC-----CCCEEEEeecCChh-HHHHHHHHhCCCCCEEEec---CCCCCCeEEEEEEc
Q 016133 66 ----------PSYRKLSSLRNYLP-----DVPILALTATAAPK-VQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 126 (394)
Q Consensus 66 ----------~~~~~l~~l~~~~~-----~~~~l~lSAT~~~~-~~~~i~~~l~~~~~~~~~~---~~~~~nl~~~v~~~ 126 (394)
+.|..+..+..... +.|++++|||+++. +...+.. ++..+.. .....|+.......
T Consensus 239 ~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~-----~ll~~~v~~~~~~~rnI~~~yi~~ 313 (1176)
T PRK09401 239 ELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFR-----ELLGFEVGSPVFYLRNIVDSYIVD 313 (1176)
T ss_pred HhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhh-----ccceEEecCcccccCCceEEEEEc
Confidence 22333444443321 57899999999875 3322211 2211221 22334554333332
Q ss_pred CchhhHHHHHHHHHHhCCCccEEEEeCcHHH---HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe--
Q 016133 127 DLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA-- 201 (394)
Q Consensus 127 ~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa-- 201 (394)
. ++...|..+++..+ ..+||||+|++. ++.+++.|...|+++..+||+| .+.+++|++|+++||||
T Consensus 314 ~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVata 384 (1176)
T PRK09401 314 E---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVA 384 (1176)
T ss_pred c---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEec
Confidence 2 45566777776654 479999999877 9999999999999999999999 23459999999999999
Q ss_pred --ccccccccCCCC-ccEEEEecCCC------CHHHHHHHHhhcc
Q 016133 202 --TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 237 (394)
Q Consensus 202 --T~~~~~GiD~p~-v~~VI~~~~p~------s~~~y~Qr~GRag 237 (394)
|++++||||+|+ |++|||||+|+ ..+.|.|++||+-
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 689999999999 89999999998 6788999999985
No 67
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=4.8e-23 Score=223.38 Aligned_cols=219 Identities=19% Similarity=0.234 Sum_probs=152.7
Q ss_pred eecChHHHHH-HHhhccCCCccEEEEecCCc-cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~~-l~~~~~~~~l~~iVvDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
.++|+|.+.. +.....+..+++|||||||. .++- ||.-.+ +..+....|+.++|+||||+... .+.+.++
T Consensus 160 ~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~l--Lk~il~~rpdLKlIlmSATld~~---~fa~~F~- 231 (1283)
T TIGR01967 160 KLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNI--DFLLGY--LKQLLPRRPDLKIIITSATIDPE---RFSRHFN- 231 (1283)
T ss_pred eeccccHHHHHhhhCcccccCcEEEEcCcchhhccc--hhHHHH--HHHHHhhCCCCeEEEEeCCcCHH---HHHHHhc-
Confidence 4566775544 33334567899999999995 5553 354332 34455556789999999999764 3444443
Q ss_pred CCCEEEecCCC-CCCeEEEEEEcCc---hhhHHHH----HHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC---CceE
Q 016133 105 QNPLVLKSSFN-RPNLFYEVRYKDL---LDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCA 173 (394)
Q Consensus 105 ~~~~~~~~~~~-~~nl~~~v~~~~~---~~~~~~~----l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g---~~~~ 173 (394)
..|.+...+.. ...++|....... ..+..+. +..++.. ..+.+|||+++..+++.+++.|.+.+ +.+.
T Consensus 232 ~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~Vl 310 (1283)
T TIGR01967 232 NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEIL 310 (1283)
T ss_pred CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEE
Confidence 34443322221 1222332211110 1122233 3333333 45789999999999999999999864 4588
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------------CHHHHHHHHhh
Q 016133 174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGR 235 (394)
Q Consensus 174 ~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GR 235 (394)
.+||+|++++|.++++.+ +..+|||||+++++|||+|+|++||++|+++ |.++|.||+||
T Consensus 311 pLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGR 388 (1283)
T TIGR01967 311 PLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGR 388 (1283)
T ss_pred eccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhh
Confidence 999999999999986653 3468999999999999999999999999543 66899999999
Q ss_pred cccCCCCceEEEEEecccHHHH
Q 016133 236 AGRDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 236 agR~g~~g~~i~l~~~~d~~~~ 257 (394)
|||.| +|.|+.+|+..+...+
T Consensus 389 AGR~~-~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 389 CGRVA-PGICIRLYSEEDFNSR 409 (1283)
T ss_pred hCCCC-CceEEEecCHHHHHhh
Confidence 99998 9999999998776543
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=7.2e-23 Score=208.66 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=99.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEec-cccccccCCCCccEEEEecC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-VAFGMGIDRKDVRLVCHFNI 222 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiD~p~v~~VI~~~~ 222 (394)
.+.+++|||+++++++.+++.|++.|.++..+||+++.++|..+++.|++|+..||||| +.+++|+|+|++++||++.+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC
Confidence 35678999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 223 PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 223 p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
|.|...|+||+||++|.+..+...++|+--
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~~~~i~D~v 452 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKSIATVWDII 452 (501)
T ss_pred CcchhhhhhhhhccccCCCCCceEEEEEee
Confidence 999999999999999998776655555443
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.6e-22 Score=205.12 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=164.8
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHH--HHHHHHHHhCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLP 79 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~--~~l~~l~~~~~ 79 (394)
++|.++|.++.+|+ .+|+++|+..+.. ...++++|||||+|..+.|+.++ |.| +.+..++....
T Consensus 63 ~er~~~~~~~~~g~--~~IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~ 128 (505)
T TIGR00595 63 SEKLQAWRKVKNGE--ILVVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKF 128 (505)
T ss_pred HHHHHHHHHHHcCC--CCEEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhc
Confidence 46788899999986 7899888775533 24568999999999999877654 444 55777888888
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEec-----CCCCCCeEEEEEEc-----CchhhHHHHHHHHHHhCCCccEE
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-----SFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAI 149 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~nl~~~v~~~-----~~~~~~~~~l~~~l~~~~~~~~I 149 (394)
+.+++++|||++.+....+.. + ....... ....|.+...-... ......++.+.+.++. ++++|
T Consensus 129 ~~~vil~SATPsles~~~~~~--g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvL 202 (505)
T TIGR00595 129 NCPVVLGSATPSLESYHNAKQ--K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSI 202 (505)
T ss_pred CCCEEEEeCCCCHHHHHHHhc--C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEE
Confidence 999999999988776654322 1 1111111 11122222211000 0112234444444443 45799
Q ss_pred EEeCcHHH------------------------------------------------------------HHHHHHHHHhC-
Q 016133 150 VYCLERTT------------------------------------------------------------CDELSAYLSAG- 168 (394)
Q Consensus 150 VF~~s~~~------------------------------------------------------------~~~l~~~L~~~- 168 (394)
||+|++.. ++.+++.|.+.
T Consensus 203 vflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f 282 (505)
T TIGR00595 203 LFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF 282 (505)
T ss_pred EEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC
Confidence 99877632 68888999886
Q ss_pred -CCceEEecCCCCHHHH--HHHHHHHhcCCCeEEEeccccccccCCCCccEEE--EecC----CC------CHHHHHHHH
Q 016133 169 -GISCAAYHAGLNDKAR--SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC--HFNI----PK------SMEAFYQES 233 (394)
Q Consensus 169 -g~~~~~~h~~l~~~~R--~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI--~~~~----p~------s~~~y~Qr~ 233 (394)
+.++..+|++++...+ .++++.|.+|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++
T Consensus 283 p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~ 362 (505)
T TIGR00595 283 PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVA 362 (505)
T ss_pred CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHH
Confidence 7789999999987665 8899999999999999999999999999999986 4443 31 356789999
Q ss_pred hhcccCCCCceEEEEEecccH
Q 016133 234 GRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 234 GRagR~g~~g~~i~l~~~~d~ 254 (394)
||+||.+++|.+++.....+.
T Consensus 363 GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 363 GRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred hccCCCCCCCEEEEEeCCCCC
Confidence 999999999999876544333
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.89 E-value=1.5e-21 Score=209.33 Aligned_cols=111 Identities=24% Similarity=0.361 Sum_probs=102.4
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC--------CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 214 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 214 (394)
.++.++||||++++.|+.+++.|...|+.+..+||. |++.+|..++++|++|+.++||||+++++|+|+|++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 467799999999999999999999999999999886 999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 215 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 215 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
++||+||+|.++..|+||+||+||.|. |.+++++..+..
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 999999999999999999999999875 777777765443
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.1e-21 Score=200.71 Aligned_cols=168 Identities=20% Similarity=0.188 Sum_probs=133.0
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeE--EEEEEcCchhhHHHHHHHHHHhC--CCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~--~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~ 157 (394)
.+.+||||+... ..++.+.+++. ++..+.++|+.. +..........+...|...++.. .+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 567999999865 45677777665 344555555542 11111222356777788777653 35689999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC---Ccc-----EEEEecCCCCHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAF 229 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v~-----~VI~~~~p~s~~~y 229 (394)
++.++..|.+.|+++..+||.++. |+..+..|..++..|+|||++++||+|++ +|. +||++++|.|...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 999999999999999999998654 44555566666678999999999999999 776 99999999999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccHH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
.||+||+||.|.+|.++.|++.+|.-
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999987743
No 72
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=3.6e-21 Score=193.39 Aligned_cols=228 Identities=21% Similarity=0.283 Sum_probs=182.3
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-C
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D 80 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~ 80 (394)
+.|+++++.+.+|. ++++++|--++ +....++++.++||||=|++.- .+=..|++.-+ .
T Consensus 352 k~r~~~l~~l~~G~--~~ivVGTHALi---------Qd~V~F~~LgLVIiDEQHRFGV---------~QR~~L~~KG~~~ 411 (677)
T COG1200 352 KARKEILEQLASGE--IDIVVGTHALI---------QDKVEFHNLGLVIIDEQHRFGV---------HQRLALREKGEQN 411 (677)
T ss_pred hHHHHHHHHHhCCC--CCEEEEcchhh---------hcceeecceeEEEEeccccccH---------HHHHHHHHhCCCC
Confidence 57899999999997 89996664433 4556678899999999998642 22223566555 5
Q ss_pred CCEEEEeecCChhHHHHHHHHhC-CCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHH---
Q 016133 81 VPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT--- 156 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~--- 156 (394)
+.++.||||+-|.... ...++ ++-..+-..++.|..+.-.+......+..++.+...+. ++.++.|-|+-++
T Consensus 412 Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE 487 (677)
T COG1200 412 PHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEESE 487 (677)
T ss_pred CcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccccc
Confidence 7899999999998876 34333 44455556778888887777776666677777777666 4667888887653
Q ss_pred -----HHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHHH
Q 016133 157 -----TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEA 228 (394)
Q Consensus 157 -----~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~ 228 (394)
.++++++.|+.. +..+..+||.|+++++++++++|++|+++|||||.+++.|||+||.++.|..+.-. .+++
T Consensus 488 ~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQ 567 (677)
T COG1200 488 KLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQ 567 (677)
T ss_pred cchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHH
Confidence 567778888754 56699999999999999999999999999999999999999999999999888653 7899
Q ss_pred HHHHHhhcccCCCCceEEEEEeccc
Q 016133 229 FYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 229 y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
.-|-.||+||.+..+.|+++|.+..
T Consensus 568 LHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 568 LHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999998765
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.87 E-value=1.5e-20 Score=197.21 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=167.5
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHH--HHHHHHHHhCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLP 79 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~--~~l~~l~~~~~ 79 (394)
++|.++|..+.+|. .+|+++||..+. ....++++|||||+|..+.++.+ .|.| +.+..++....
T Consensus 228 ~~r~~~~~~~~~g~--~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 228 GERLDEWRKAKRGE--AKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVRAKLE 293 (679)
T ss_pred HHHHHHHHHHHcCC--CCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHHhhcc
Confidence 35677888998886 789988886442 23456999999999998876643 3433 56766777778
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC---CCCCeEEEEEEc--------CchhhHHHHHHHHHHhCCCccE
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANGDTCA 148 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~nl~~~v~~~--------~~~~~~~~~l~~~l~~~~~~~~ 148 (394)
+.+++++|||++.+....+.. |.-........+ ..|.+...-... ......++.+.+.++ .+.++
T Consensus 294 ~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g~qv 369 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RGEQV 369 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--cCCeE
Confidence 999999999998877664432 111111111111 122222111000 011223344444443 34578
Q ss_pred EEEeCcH------------------------------------------------------------HHHHHHHHHHHhC
Q 016133 149 IVYCLER------------------------------------------------------------TTCDELSAYLSAG 168 (394)
Q Consensus 149 IVF~~s~------------------------------------------------------------~~~~~l~~~L~~~ 168 (394)
|||+|++ ..++.+++.|.+.
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 9987753 2567888888886
Q ss_pred --CCceEEecCCCC--HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC--CC----------CHHHHHHH
Q 016133 169 --GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--PK----------SMEAFYQE 232 (394)
Q Consensus 169 --g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--p~----------s~~~y~Qr 232 (394)
+.++..+|++++ ..++++++++|++|+.+|||+|+++++|+|+|+|++|+.++. +. ....|+|+
T Consensus 450 fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~ 529 (679)
T PRK05580 450 FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQV 529 (679)
T ss_pred CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHH
Confidence 788999999986 467899999999999999999999999999999999965554 33 23679999
Q ss_pred HhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 233 SGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 233 ~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
+||+||.++.|.+++.....+...++.+.
T Consensus 530 ~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 530 AGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 99999999999999877655545444443
No 74
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=1.1e-20 Score=199.56 Aligned_cols=226 Identities=21% Similarity=0.212 Sum_probs=179.3
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
+|.+++++.+.+|+ ++|+++|-- .|.+...+++++++||||-|++.=.. =.+|+.+ ..++
T Consensus 684 kE~~~il~~la~G~--vDIvIGTHr---------LL~kdv~FkdLGLlIIDEEqRFGVk~------KEkLK~L---r~~V 743 (1139)
T COG1197 684 KEQKEILKGLAEGK--VDIVIGTHR---------LLSKDVKFKDLGLLIIDEEQRFGVKH------KEKLKEL---RANV 743 (1139)
T ss_pred HHHHHHHHHHhcCC--ccEEEechH---------hhCCCcEEecCCeEEEechhhcCccH------HHHHHHH---hccC
Confidence 57889999999998 999976643 33555677889999999999864211 1344444 4589
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCC-CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~ 160 (394)
-++-||||+-|...+ ....|+++-.++.+++ +|-.+.-.|...+.. -..+.+.+-+. .++++....|.++..+.
T Consensus 744 DvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~-~ireAI~REl~--RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 744 DVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL-LIREAILRELL--RGGQVFYVHNRVESIEK 818 (1139)
T ss_pred cEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCChH-HHHHHHHHHHh--cCCEEEEEecchhhHHH
Confidence 999999999999988 6778888876666654 555565555554432 22233333332 35677777899999999
Q ss_pred HHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHHHHHHHHhhcc
Q 016133 161 LSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAG 237 (394)
Q Consensus 161 l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRag 237 (394)
+++.|++. ..++...||.|+..+-++++..|.+|+.+|||||.+.+.|||+|+++.+|.-+.-. .+++.+|-.||+|
T Consensus 819 ~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVG 898 (1139)
T COG1197 819 KAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 898 (1139)
T ss_pred HHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccC
Confidence 99999986 55789999999999999999999999999999999999999999999998776653 6899999999999
Q ss_pred cCCCCceEEEEEecc
Q 016133 238 RDQLPSKSLLYYGMD 252 (394)
Q Consensus 238 R~g~~g~~i~l~~~~ 252 (394)
|..+.++|+++|.+.
T Consensus 899 RS~~~AYAYfl~p~~ 913 (1139)
T COG1197 899 RSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CccceEEEEEeecCc
Confidence 999999999999864
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.1e-20 Score=195.47 Aligned_cols=220 Identities=16% Similarity=0.156 Sum_probs=147.1
Q ss_pred ccEEEeCCceecChHHH----HHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~----~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
..|+++|..++...... ...........+++||+||||.+.. +.|++ +...++....++||||+..+
T Consensus 344 ~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr~---il~~l~a~~RLGLTATP~Re 414 (732)
T TIGR00603 344 AGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFRR---VLTIVQAHCKLGLTATLVRE 414 (732)
T ss_pred CcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHHH---HHHhcCcCcEEEEeecCccc
Confidence 35677777655422100 0111222334689999999998742 33444 33344556789999998754
Q ss_pred HHH--HHHHHhCCCCCEEEecC--------CCCCCeEEEEEEcC---------------------chhhHHHHHHHHHHh
Q 016133 94 VQK--DVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD---------------------LLDDAYADLCSVLKA 142 (394)
Q Consensus 94 ~~~--~i~~~l~~~~~~~~~~~--------~~~~nl~~~v~~~~---------------------~~~~~~~~l~~~l~~ 142 (394)
... ++...+ .|.++..+ +-.+-..+.+.... ....++..+..+++.
T Consensus 415 D~~~~~L~~Li---GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~ 491 (732)
T TIGR00603 415 DDKITDLNFLI---GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRF 491 (732)
T ss_pred CCchhhhhhhc---CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHH
Confidence 321 221212 23333321 11111111111110 112345555556654
Q ss_pred C--CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEeccccccccCCCCccEEEE
Q 016133 143 N--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVRLVCH 219 (394)
Q Consensus 143 ~--~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p~v~~VI~ 219 (394)
+ .+.++||||.+...++.++..| .+..+||+++..+|.+++++|++| .+++||+|+++++|||+|++++||+
T Consensus 492 he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~ 566 (732)
T TIGR00603 492 HEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ 566 (732)
T ss_pred HhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE
Confidence 3 6779999999999999999988 246789999999999999999965 8899999999999999999999999
Q ss_pred ecCC-CCHHHHHHHHhhcccCCCCceE-------EEEEecccH
Q 016133 220 FNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 254 (394)
Q Consensus 220 ~~~p-~s~~~y~Qr~GRagR~g~~g~~-------i~l~~~~d~ 254 (394)
++.| .|...|+||+||++|.+..+.+ +.+++++..
T Consensus 567 ~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 567 ISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred eCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9988 5999999999999999866554 666666554
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.7e-20 Score=195.88 Aligned_cols=167 Identities=22% Similarity=0.239 Sum_probs=136.8
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
.+.+||+|+..+. ..+.+..++ .++..++++|.+..... .......+...|...+.. ..+.++||||+|++.
T Consensus 365 kl~GmTGTa~t~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5789999985433 444454444 36677888887654321 112335677777777754 357799999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCC---CCcc-----EEEEecCCCCHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAF 229 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~---p~v~-----~VI~~~~p~s~~~y 229 (394)
++.++..|.+.|+++..+||.+.+.++..+..++..| .|+|||++++||+|+ |+|. +||++++|.|...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999999999999999999998888887777666 799999999999999 7999 99999999999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
.||+||+||.|.+|.++.|++.+|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999998764
No 77
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.85 E-value=2.8e-20 Score=203.70 Aligned_cols=199 Identities=20% Similarity=0.310 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCC---------CCHHH-HHHH--
Q 016133 4 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---------DFRPS-YRKL-- 71 (394)
Q Consensus 4 r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~---------~fr~~-~~~l-- 71 (394)
+...++.+.+|. .+|+++|| +++......... .++++||||||++++++. +|.++ ...+
T Consensus 167 ~~~~~~~l~~~~--~dIlV~Tp------~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~ 237 (1171)
T TIGR01054 167 KKEFMERIENGD--FDILITTT------MFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWK 237 (1171)
T ss_pred HHHHHHHHhcCC--CCEEEECH------HHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHH
Confidence 445566666664 56775555 554443222222 799999999999998652 36653 2221
Q ss_pred -----------------HHHHHhCC-CCC--EEEEeecC-ChhHHHHHHHHhCCCCCEEEecC---CCCCCeEEEEEEcC
Q 016133 72 -----------------SSLRNYLP-DVP--ILALTATA-APKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKD 127 (394)
Q Consensus 72 -----------------~~l~~~~~-~~~--~l~lSAT~-~~~~~~~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~ 127 (394)
..+....| +.| ++++|||+ +..+...+ +.+...+..+ ....|+........
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l-----~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 238 LIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL-----FRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH-----cccccceEecCccccccceEEEEEecc
Confidence 11222233 334 56789995 44433221 1222222222 22334433332222
Q ss_pred chhhHHHHHHHHHHhCCCccEEEEeCcH---HHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe---
Q 016133 128 LLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA--- 201 (394)
Q Consensus 128 ~~~~~~~~l~~~l~~~~~~~~IVF~~s~---~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa--- 201 (394)
.+...|..+++..+ ..+||||+|+ +.|++++..|.+.|+++..+||+++. .++++|++|+++||||
T Consensus 313 ---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~ 384 (1171)
T TIGR01054 313 ---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVAS 384 (1171)
T ss_pred ---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEecc
Confidence 12345666776654 4799999999 99999999999999999999999973 6899999999999999
Q ss_pred -ccccccccCCCC-ccEEEEecCCC
Q 016133 202 -TVAFGMGIDRKD-VRLVCHFNIPK 224 (394)
Q Consensus 202 -T~~~~~GiD~p~-v~~VI~~~~p~ 224 (394)
|++++||||+|+ |++|||||+|+
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCC
Confidence 489999999999 89999999996
No 78
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.84 E-value=3.6e-20 Score=194.56 Aligned_cols=218 Identities=20% Similarity=0.218 Sum_probs=149.0
Q ss_pred ccEEEeCCceecChHHHHHHHh--hccCCCccEEEEecCCccccC--CCCCHHHHHH-HHHHHHhCCCCCEEEEeecCCh
Q 016133 18 LRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSW--GHDFRPSYRK-LSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~--g~~fr~~~~~-l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.+|+++|||.+- .+.+ ......+++|||||+|.+.+. |.- +.. +...+...+.+++++||||+++
T Consensus 123 ~~ViVtT~EK~D------sl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~----lE~iv~r~~~~~~~~rivgLSATlpN 192 (766)
T COG1204 123 YDVIVTTPEKLD------SLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV----LESIVARMRRLNELIRIVGLSATLPN 192 (766)
T ss_pred CCEEEEchHHhh------HhhhcCcchhhcccEEEEeeeeecCCcccCce----ehhHHHHHHhhCcceEEEEEeeecCC
Confidence 468888888553 1211 112346999999999999864 322 222 3345555567899999999988
Q ss_pred hHHHHHHHHhCCCCCE-EEecCCCCCCeEE--EEEEcC--c-------hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHH
Q 016133 93 KVQKDVMESLCLQNPL-VLKSSFNRPNLFY--EVRYKD--L-------LDDAYADLCSVLKANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 93 ~~~~~i~~~l~~~~~~-~~~~~~~~~nl~~--~v~~~~--~-------~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~ 160 (394)
.. ++..+++-.... .+........+.+ .+.... . ....+..+...++ .++++||||+|++.+..
T Consensus 193 ~~--evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 193 AE--EVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEK 268 (766)
T ss_pred HH--HHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHH
Confidence 74 668888765331 1111111111111 111111 0 0112223333333 46689999999999999
Q ss_pred HHHHHHhC---------------------C----------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 161 LSAYLSAG---------------------G----------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 161 l~~~L~~~---------------------g----------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.|..|... + ..++++|+||+.++|..+.+.|+.|.++|||||+
T Consensus 269 ~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 269 TAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99999830 0 1368999999999999999999999999999999
Q ss_pred ccccccCCCCccEEE----Eec-----CCCCHHHHHHHHhhcccCC--CCceEEEEE
Q 016133 204 AFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAGRDQ--LPSKSLLYY 249 (394)
Q Consensus 204 ~~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Qr~GRagR~g--~~g~~i~l~ 249 (394)
.++.|+|+|.-++|| -|+ .+.+.-+|.|+.|||||.| ..|.++++.
T Consensus 349 TLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 349 TLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999877777 566 5668899999999999998 346666666
No 79
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=4.3e-20 Score=191.90 Aligned_cols=118 Identities=22% Similarity=0.330 Sum_probs=108.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec--
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-- 221 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~-- 221 (394)
.+.++||||+|++.++.+++.|.+.|+++..+||+++..+|.++++.|+.|++.|+|||+.+++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHH
Q 016133 222 ---IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 222 ---~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
.|.+..+|+||+|||||. ..|.+++|++..+....+.+..
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 799999999999999998 5899999998777655555444
No 80
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.84 E-value=6e-20 Score=195.35 Aligned_cols=239 Identities=22% Similarity=0.246 Sum_probs=168.9
Q ss_pred HHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEe
Q 016133 10 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALT 87 (394)
Q Consensus 10 ~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~~-~~~~l~lS 87 (394)
.+..++ .+||+++|+|+-.--....-.-.....++++|||||+|..-- .|.+..--+++|..+....+ +.++|+.|
T Consensus 162 ~~~~~p--p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 162 AIIRNP--PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred HHHhCC--CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 555665 579999999774311110111122234499999999998653 67777777788877777666 78899999
Q ss_pred ecCChhHHHHHHHHhCCCCCEE-EecCCCCCCeEEEEEEcC-c-------hhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 88 ATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKD-L-------LDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 88 AT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~nl~~~v~~~~-~-------~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
||....... ...+....... +..+..+....+.+...+ . .......+..++.. ..+-++|+|+.+++
T Consensus 240 AT~~np~e~--~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~ 317 (851)
T COG1205 240 ATLANPGEF--AEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRK 317 (851)
T ss_pred ccccChHHH--HHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhh
Confidence 998766543 33333333322 332222222223333222 0 01223333333322 24668999999999
Q ss_pred HHHHHH----HHHHhCC----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHH
Q 016133 157 TCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SME 227 (394)
Q Consensus 157 ~~~~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~ 227 (394)
.++.++ ..+...+ ..+..|+|++...+|.++...|++|++.++++|+++.-|||+.++..||+.+.|. +..
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~ 397 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVL 397 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHH
Confidence 999998 4444445 5689999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhcccCCCCceEEEEEecc
Q 016133 228 AFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 228 ~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
+++|++|||||.++.+..++.+..+
T Consensus 398 ~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 398 SFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred HHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999888877777643
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=3e-19 Score=185.13 Aligned_cols=166 Identities=21% Similarity=0.241 Sum_probs=135.9
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEE---EEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
++.+||+|+..+ ...+.+..++ .++..++++|.+.... .+. ....++..+...+.. ..+.++||||+|++
T Consensus 361 kl~GmTGTa~~~-~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVA-EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 578999997543 3444554443 4677888888775542 222 235677777777654 46779999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC---------CccEEEEecCCCCHH
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSME 227 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---------~v~~VI~~~~p~s~~ 227 (394)
.++.++..|.+.|+++..+||.+.+.++..+.++++.| .|+|||++++||+|++ ++.+|+++++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999999999999999999999988887776666 7999999999999999 999999999998877
Q ss_pred HHHHHHhhcccCCCCceEEEEEecccHH
Q 016133 228 AFYQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 228 ~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
. .||+||+||.|.+|.++.|++.+|.-
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchhh
Confidence 7 99999999999999999999987743
No 82
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.83 E-value=5e-20 Score=174.45 Aligned_cols=220 Identities=19% Similarity=0.266 Sum_probs=151.7
Q ss_pred eecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-------CCCEEEEeecCChhHHHH
Q 016133 27 LTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKD 97 (394)
Q Consensus 27 ~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lSAT~~~~~~~~ 97 (394)
+++||+++..+.+ +.....+.++|+|||+.++..|.+ ..|..+....| ..|.+..|||+..-....
T Consensus 343 vvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk 417 (725)
T KOG0349|consen 343 VVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKK 417 (725)
T ss_pred eecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeee
Confidence 4678887776632 334455889999999999876643 22333333333 468899999976432222
Q ss_pred HHHH-hCCCCCEEEecCCCC----------------------------------CCeEEEEEEcCchhhHHHHH-----H
Q 016133 98 VMES-LCLQNPLVLKSSFNR----------------------------------PNLFYEVRYKDLLDDAYADL-----C 137 (394)
Q Consensus 98 i~~~-l~~~~~~~~~~~~~~----------------------------------~nl~~~v~~~~~~~~~~~~l-----~ 137 (394)
+.+. +.++..+-++..... .|+...-..+.........| .
T Consensus 418 ~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v 497 (725)
T KOG0349|consen 418 VGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGV 497 (725)
T ss_pred hhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhh
Confidence 2211 111111111110000 01110000011111111111 1
Q ss_pred HHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCc
Q 016133 138 SVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 214 (394)
Q Consensus 138 ~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 214 (394)
..++.+.-.++||||+|+..|+.+.++++++| +++..+||+..+.+|.+.++.|+.+.++.||||+++++|+|+..+
T Consensus 498 ~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 498 VAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred hhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 22344556689999999999999999999874 579999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEec
Q 016133 215 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 215 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
-++||..+|.+-..|+||+||+||+.+-|.+|.++.-
T Consensus 578 p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 578 PFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred ceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999999999999999999998753
No 83
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.6e-21 Score=171.10 Aligned_cols=192 Identities=19% Similarity=0.346 Sum_probs=134.2
Q ss_pred EEeCCc-eecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 21 LYVTPE-LTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 21 l~~tPe-~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
|--+|. +++|||++..| .+..+++++..+|+||++.+++|- |.|.+...+ ++...+..|++.+|||++++++.-
T Consensus 158 lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l-DMrRDvQEi--fr~tp~~KQvmmfsatlskeiRpv 234 (387)
T KOG0329|consen 158 LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL-DMRRDVQEI--FRMTPHEKQVMMFSATLSKEIRPV 234 (387)
T ss_pred HhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH-HHHHHHHHH--hhcCcccceeeeeeeecchhhHHH
Confidence 334777 57899999888 455667889999999999999864 456555554 333334899999999999998763
Q ss_pred HHHHhCCCCCEEEecCCC-C---CCe-EEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 98 VMESLCLQNPLVLKSSFN-R---PNL-FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 98 i~~~l~~~~~~~~~~~~~-~---~nl-~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
.+.+ +.+|..+-.... . ..+ .|.+..+. .++-..+.++|....-.+++||+.|... |
T Consensus 235 -C~kF-mQdPmEi~vDdE~KLtLHGLqQ~YvkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l------- 296 (387)
T KOG0329|consen 235 -CHKF-MQDPMEIFVDDEAKLTLHGLQQYYVKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L------- 296 (387)
T ss_pred -HHhh-hcCchhhhccchhhhhhhhHHHHHHhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h-------
Confidence 3332 455543222111 0 011 11122111 2333344444444445579999998765 1
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
+ | +.+ +|||++||+|+|+..|+.|+|||+|.+..+|+||+|||||.|..|.++.|++..
T Consensus 297 -------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 297 -------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred -------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch
Confidence 0 2 123 899999999999999999999999999999999999999999999999999765
Q ss_pred cH
Q 016133 253 DR 254 (394)
Q Consensus 253 d~ 254 (394)
+.
T Consensus 356 ~d 357 (387)
T KOG0329|consen 356 ND 357 (387)
T ss_pred hh
Confidence 43
No 84
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=3.3e-19 Score=186.38 Aligned_cols=110 Identities=24% Similarity=0.354 Sum_probs=102.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC-
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 222 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~- 222 (394)
.+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 223 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 223 ----p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
|.+..+|+||+||+||. ..|.+++|++..+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 78999999999999996 68999999985433
No 85
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=9.7e-19 Score=180.31 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=137.1
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHH--hCCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~--~~~~~~~IVF~~s~~~ 157 (394)
.+.+||+|+..+. ..+.+..++. ++..++++|....... ......+++..+.+.+. ...++|+||||+|++.
T Consensus 342 kl~GmTGTa~te~-~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEE-EEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHH-HHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5778999986543 3445544443 6677888887654321 11123456666655552 3467899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCC-------ccEEEEecCCCCHHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFY 230 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~-------v~~VI~~~~p~s~~~y~ 230 (394)
++.++..|.+.|++...+||. +.+|+..+..|..+...|+|||+++|||+|++. .-+||+++.|.|...|.
T Consensus 418 se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~ 495 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDN 495 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHH
Confidence 999999999999999999998 778999999999999999999999999999998 45999999999999999
Q ss_pred HHHhhcccCCCCceEEEEEecccHH
Q 016133 231 QESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 231 Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
|+.||+||.|.+|.+..|++.+|.-
T Consensus 496 q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 496 QLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHhccccCCCCCcceEEEEeccHHH
Confidence 9999999999999999999988743
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=7.4e-19 Score=182.65 Aligned_cols=167 Identities=23% Similarity=0.290 Sum_probs=136.7
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
++.+||+|+..+ ...+.+..++. ++..++++|.++.... .......++..+.+.+.. ..+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTE-EEEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 577899998644 33444544443 6677888887654332 112235677777777743 367899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC---Ccc-----EEEEecCCCCHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAF 229 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v~-----~VI~~~~p~s~~~y 229 (394)
++.++..|.+.|++...+||++...++..+.++++.|. |+|||+++|||.|++ +|. +||+++.|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 99999999999999999999999888888877777776 999999999999994 899 99999999999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
.|+.||+||.|.+|.+..|++.+|.
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999998764
No 87
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=5e-19 Score=147.35 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhC--CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccc
Q 016133 131 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208 (394)
Q Consensus 131 ~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 208 (394)
.+...+..++... .++++||||++...++.+++.|.+.+.++..+||++++.+|..+++.|.++...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5677777777654 36789999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEE
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
+|+|++++||++++|.+...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887654
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.81 E-value=1.2e-18 Score=185.13 Aligned_cols=186 Identities=15% Similarity=0.222 Sum_probs=125.3
Q ss_pred cEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCC--------CEEEe-------
Q 016133 47 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN--------PLVLK------- 111 (394)
Q Consensus 47 ~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~--------~~~~~------- 111 (394)
++|||||+|.+..+. ...+..+...... .+.++|+||||+|+..++.+.+.++... |.+..
T Consensus 441 svvIiDEVHAyD~ym---~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 441 SVLIVDEVHAYDAYM---YGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred CeEEEechhhCCHHH---HHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 479999999875322 1222222222222 3688999999999998887777554321 11100
Q ss_pred ---cCCC----CCCeEEEEEEc--C---chhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC---CceEEec
Q 016133 112 ---SSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYH 176 (394)
Q Consensus 112 ---~~~~----~~nl~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g---~~~~~~h 176 (394)
.... .......+... . .....++.+.+.+ ..+++++|||||++.++++++.|++.+ ..+..+|
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 0000 01111122111 1 1112223333332 246689999999999999999999865 6799999
Q ss_pred CCCCHHHHH----HHHHHH-hcCC---CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCC
Q 016133 177 AGLNDKARS----SVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241 (394)
Q Consensus 177 ~~l~~~~R~----~~~~~f-~~g~---~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 241 (394)
|.++..+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| +..|+||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999994 567778 5665 4799999999999999 68999998777 7899999999999875
No 89
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.81 E-value=5e-19 Score=180.44 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=94.5
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhC---CCceEE--------ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAG---GISCAA--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 211 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~---g~~~~~--------~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~ 211 (394)
.+..++||||.+|+.|..|..+|.+. |++... ...+|++.+..+++++|++|+++|||||++++.|+|+
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI 490 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc
Confidence 35668999999999999999999842 333322 3358999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 212 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 212 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
+.++.||-||...|+...+||.|| ||.- .|.++++++...
T Consensus 491 ~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~ 530 (746)
T KOG0354|consen 491 GECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSE 530 (746)
T ss_pred ccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchh
Confidence 999999999999999999999999 9974 678888887433
No 90
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=3.6e-18 Score=176.62 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=164.4
Q ss_pred ccEEEeCCcee--cChHHHHHHHhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHH-HhCCCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v--~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~-~~~~~~~~l~lSAT~~~~ 93 (394)
.+++++|||.. .|-..... ..-...+.++||||+|.+-+ .|.-...-..++..+. .....+++++||||+|+-
T Consensus 212 tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~ 288 (1230)
T KOG0952|consen 212 TQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY 288 (1230)
T ss_pred cCEEEecccceeeeeeeeccc---hhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH
Confidence 57999999943 33221111 11124589999999998864 4533222222322222 233479999999999875
Q ss_pred HHHHHHHHhCCCCCE---EEecCCCCCCeEEEEEEcCch----------hhHHHHHHHHHHhCCCccEEEEeCcHHHHHH
Q 016133 94 VQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKDLL----------DDAYADLCSVLKANGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~---~~~~~~~~~nl~~~v~~~~~~----------~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~ 160 (394)
.|+..+|+...+. .+...+..-.+...+.-.... +-.++.+.+.++ .+.+++|||.+++.+..
T Consensus 289 --eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~ 364 (1230)
T KOG0952|consen 289 --EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIR 364 (1230)
T ss_pred --HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHH
Confidence 4788999876322 222333322333322211111 112344444444 36689999999999999
Q ss_pred HHHHHHhCC-----------------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEE
Q 016133 161 LSAYLSAGG-----------------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 217 (394)
Q Consensus 161 l~~~L~~~g-----------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~V 217 (394)
.|+.|.+.+ .....+|+||...+|..+.+.|..|.++||+||..++.|+|+|+- +|
T Consensus 365 tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~-aV 443 (1230)
T KOG0952|consen 365 TAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY-AV 443 (1230)
T ss_pred HHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce-EE
Confidence 999987531 135789999999999999999999999999999999999999974 45
Q ss_pred EEecCC-----C------CHHHHHHHHhhcccCC--CCceEEEEEecccHHHHHHHHHhccc
Q 016133 218 CHFNIP-----K------SMEAFYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 218 I~~~~p-----~------s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
|..+.+ + +.-+.+|..|||||.+ ..|.++++.+.+-...+..++....+
T Consensus 444 iIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~p 505 (1230)
T KOG0952|consen 444 IIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNP 505 (1230)
T ss_pred EecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCCh
Confidence 544433 2 5678899999999975 67999999998888888888765544
No 91
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2e-17 Score=173.20 Aligned_cols=168 Identities=22% Similarity=0.250 Sum_probs=136.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
.+-+||+|+..+.. .+.+..++ .++..+.++|.+..... .......++..|...+.. ..+.|+||||+|++.
T Consensus 535 kLaGMTGTA~te~~-Ef~~iY~L---~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEAS-EFFEIYKL---DVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHH-HHHHHhCC---cEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 46688999865543 34444443 36777888887654321 112235677788877754 367899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC---Ccc-----EEEEecCCCCHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAF 229 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v~-----~VI~~~~p~s~~~y 229 (394)
++.++..|.+.|++...+|+ .+.+|+..+..|..+...|+|||+++|||+|++ .|. +||++..|.|...|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 99999999999999999998 578899999999999999999999999999999 554 34899999999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccHH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
.|+.||+||.|.+|.++.|++.+|.-
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999999999999999987754
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=1.2e-17 Score=167.43 Aligned_cols=197 Identities=22% Similarity=0.316 Sum_probs=138.6
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecC--------CC
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FN 115 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~ 115 (394)
+.+++||+||||++.. +.|+.+...... ..++++||||+.......+......-.+.++..+ ..
T Consensus 145 ~~~~liI~DE~Hh~~a------~~~~~~~~~~~~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~L 216 (442)
T COG1061 145 NEFGLIIFDEVHHLPA------PSYRRILELLSA--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYL 216 (442)
T ss_pred cccCEEEEEccccCCc------HHHHHHHHhhhc--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCc
Confidence 4699999999997764 345555443332 2229999999875542222222222224444332 22
Q ss_pred CCCeEEEEEEcCch------------------------------------hhHHHHHHHHHHhC-CCccEEEEeCcHHHH
Q 016133 116 RPNLFYEVRYKDLL------------------------------------DDAYADLCSVLKAN-GDTCAIVYCLERTTC 158 (394)
Q Consensus 116 ~~nl~~~v~~~~~~------------------------------------~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~ 158 (394)
.|-.++.+...... ..+...+..++..+ .+.+++||+.++.++
T Consensus 217 ap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a 296 (442)
T COG1061 217 APYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHA 296 (442)
T ss_pred cceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHH
Confidence 33333333221110 11122233333333 356899999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhccc
Q 016133 159 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238 (394)
Q Consensus 159 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR 238 (394)
..++..|...|+ +..+.+..+..+|..+++.|+.|++++||++.++..|+|+|+++++|....+.|...|+||+||.-|
T Consensus 297 ~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 297 YEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999998888 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -C-CCCceEEEEE
Q 016133 239 -D-QLPSKSLLYY 249 (394)
Q Consensus 239 -~-g~~g~~i~l~ 249 (394)
. |+....+++|
T Consensus 376 ~~~~k~~~~~~~~ 388 (442)
T COG1061 376 PAEGKEDTLALDY 388 (442)
T ss_pred CCCCCCceEEEEE
Confidence 3 3333334444
No 93
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=6.2e-19 Score=134.01 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.9
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
++|++.++++..+||++++.+|..+++.|.+++..|||||+++++|+|+|++++||++++|.|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999987
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.9e-17 Score=148.93 Aligned_cols=218 Identities=18% Similarity=0.259 Sum_probs=138.5
Q ss_pred CCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 24 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 24 tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+|-+|+|...+.+..+. +++++|||+|.+.--. .+. .....-....+...+|.||||++++...++...-.
T Consensus 186 ~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~---d~~-L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 186 APLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD---DQS-LQYAVKKARKKEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred ccEEEEehHHHHHHHhh-----ccEEEEeccccccccC---CHH-HHHHHHHhhcccCceEEEecCChHHHHHHhhhCCe
Confidence 34466666655554443 8999999999765211 111 11111112234788999999999988776543210
Q ss_pred --CCCCEE-EecCCCCCCeEEEEEEcCch-hhH-HHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhC--CCceEE
Q 016133 104 --LQNPLV-LKSSFNRPNLFYEVRYKDLL-DDA-YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG--GISCAA 174 (394)
Q Consensus 104 --~~~~~~-~~~~~~~~nl~~~v~~~~~~-~~~-~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~ 174 (394)
+.-|.. ...+...|...+.-...... ..+ .-.|..+|+. ..+.+++||+++++..+++++.|++. ...++.
T Consensus 257 ~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~ 336 (441)
T COG4098 257 RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIAS 336 (441)
T ss_pred eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceee
Confidence 111111 11222333322222111110 111 1245666654 34679999999999999999999654 334578
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC--CCHHHHHHHHhhcccCCC-CceEEEEEec
Q 016133 175 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--KSMEAFYQESGRAGRDQL-PSKSLLYYGM 251 (394)
Q Consensus 175 ~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p--~s~~~y~Qr~GRagR~g~-~g~~i~l~~~ 251 (394)
+|+. ...|.+..++|++|++.+|++|.+++||+.+|+|++++.-.-- .+-++++|.+||+||.-. |.--++||..
T Consensus 337 Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 337 VHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred eecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 8885 4568899999999999999999999999999999986643322 578999999999999753 3333444444
Q ss_pred c
Q 016133 252 D 252 (394)
Q Consensus 252 ~ 252 (394)
.
T Consensus 415 G 415 (441)
T COG4098 415 G 415 (441)
T ss_pred c
Confidence 3
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.9e-17 Score=173.75 Aligned_cols=221 Identities=19% Similarity=0.210 Sum_probs=156.6
Q ss_pred eecChHHHH-HHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~-~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
.+.|.|.+. .+.....+..+++|||||||.-+-. .||-- .-+..+....+ +.++|.||||+..+... +.++.
T Consensus 143 k~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDilL--gllk~~~~~rr~DLKiIimSATld~~rfs---~~f~~ 216 (845)
T COG1643 143 KVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDILL--GLLKDLLARRRDDLKLIIMSATLDAERFS---AYFGN 216 (845)
T ss_pred EEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHHH--HHHHHHHhhcCCCceEEEEecccCHHHHH---HHcCC
Confidence 567888554 4565666888999999999975421 12221 22334444445 69999999999887543 44432
Q ss_pred CCCEEEecC-CCCCCeEEEEEE-cCc-hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecC
Q 016133 105 QNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHA 177 (394)
Q Consensus 105 ~~~~~~~~~-~~~~nl~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~ 177 (394)
-|++...+ ..+-.++|.-.. .+. ....+..........+.+.+|||.+..++.+.+++.|.+ ....+.++||
T Consensus 217 -apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~ 295 (845)
T COG1643 217 -APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYG 295 (845)
T ss_pred -CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccc
Confidence 34333222 222234442221 111 122222223333344577899999999999999999998 3477899999
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC------------------CCCHHHHHHHHhhcccC
Q 016133 178 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRD 239 (394)
Q Consensus 178 ~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~ 239 (394)
.|+.++..++++.-..|+-+||+||++++.+|.+|+|++||.-+. |-|-++..||.|||||-
T Consensus 296 ~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~ 375 (845)
T COG1643 296 ALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT 375 (845)
T ss_pred cCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC
Confidence 999999999888777777779999999999999999999997664 34778999999999998
Q ss_pred CCCceEEEEEecccHH
Q 016133 240 QLPSKSLLYYGMDDRR 255 (394)
Q Consensus 240 g~~g~~i~l~~~~d~~ 255 (394)
+ +|.|+-+|+.++..
T Consensus 376 ~-pGicyRLyse~~~~ 390 (845)
T COG1643 376 G-PGICYRLYSEEDFL 390 (845)
T ss_pred C-CceEEEecCHHHHH
Confidence 7 99999999986655
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=4e-17 Score=170.98 Aligned_cols=242 Identities=19% Similarity=0.190 Sum_probs=165.0
Q ss_pred ccEEEeCCcee--cC-hHHHHHHHhhccCCCccEEEEecCCccc-cCCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCCh
Q 016133 18 LRLLYVTPELT--AT-PGFMSKLKKIHSRGLLNLVAIDEAHCIS-SWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 18 ~~il~~tPe~v--~t-p~~~~~l~~~~~~~~l~~iVvDEaH~l~-~~g~~fr~~~~~l-~~l~~~~~~~~~l~lSAT~~~ 92 (394)
..++++|||.. .| .+--....+ -++++|+||.|.+- +.|.-......+. ........+.++++||||+|+
T Consensus 412 TqVIV~TPEK~DiITRk~gdraY~q-----lvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 412 TQVIVTTPEKWDIITRKSGDRAYEQ-----LVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred ceeEEeccchhhhhhcccCchhHHH-----HHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCc
Confidence 47899999832 22 111111111 27889999999884 3453211111111 111111237899999999997
Q ss_pred hHHHHHHHHhCCCCCEEEec--CCCCCCeEEEEEEcCch--hhHHH-----HHHHHHHhCCCccEEEEeCcHHHHHHHHH
Q 016133 93 KVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKDLL--DDAYA-----DLCSVLKANGDTCAIVYCLERTTCDELSA 163 (394)
Q Consensus 93 ~~~~~i~~~l~~~~~~~~~~--~~~~~nl~~~v~~~~~~--~~~~~-----~l~~~l~~~~~~~~IVF~~s~~~~~~l~~ 163 (394)
- .|+...|+...+-.+.. ++..-.+.+++.-.... ...++ ...++++..+..++|||+.+|+++-+.|.
T Consensus 487 y--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~ 564 (1674)
T KOG0951|consen 487 Y--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTAR 564 (1674)
T ss_pred h--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHH
Confidence 6 46777777665444333 44444555544432211 11121 23445666777899999999999999888
Q ss_pred HHHhC-------------------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc
Q 016133 164 YLSAG-------------------------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 164 ~L~~~-------------------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
.++.. .+..+.+|+||+..+|..+.+.|..|.++|+|+|..++
T Consensus 565 aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla 644 (1674)
T KOG0951|consen 565 AIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA 644 (1674)
T ss_pred HHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh
Confidence 87621 13578999999999999999999999999999999999
Q ss_pred cccCCCCccEEE----EecC------CCCHHHHHHHHhhcccCC--CCceEEEEEecccHHHHHHHHHhccc
Q 016133 207 MGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 207 ~GiD~p~v~~VI----~~~~------p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
+|+|+|.-.++| -|++ +.++.+.+|+.|||||.+ ..|..++.....++.....++++..+
T Consensus 645 wgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 645 WGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred hhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 999999887777 3553 458999999999999976 45778888888888777776665443
No 97
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.74 E-value=6.4e-17 Score=161.61 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=157.8
Q ss_pred cChHHH-HHHHhhccCCCccEEEEecCCccccCCCCCHHHH--HHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 29 ATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 29 ~tp~~~-~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~--~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
.|.|.+ ..+.....+.+.++|||||||.-+ ...++ .-|.++.+..++.++|.+|||+..+... .+++.
T Consensus 146 mTDG~LLRE~l~Dp~LskYsvIIlDEAHERs-----l~TDiLlGlLKki~~~R~~LklIimSATlda~kfS---~yF~~- 216 (674)
T KOG0922|consen 146 MTDGMLLREILKDPLLSKYSVIILDEAHERS-----LHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFS---EYFNN- 216 (674)
T ss_pred ecchHHHHHHhcCCccccccEEEEechhhhh-----hHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHH---HHhcC-
Confidence 455533 334444556779999999999643 23332 2355566666788999999999876544 33322
Q ss_pred CCEEEecCCCCC-CeEEEEE-EcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC----CC----ceEEe
Q 016133 106 NPLVLKSSFNRP-NLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAY 175 (394)
Q Consensus 106 ~~~~~~~~~~~~-nl~~~v~-~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~----g~----~~~~~ 175 (394)
-|++...+-.-| .+.|.-. ..+..+..+..+.++....+.+-+|||....++.+.+++.|.+. +- -+.++
T Consensus 217 a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lpl 296 (674)
T KOG0922|consen 217 APILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPL 296 (674)
T ss_pred CceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeee
Confidence 233333332222 2233221 12223444555666666677778999999999999999999875 11 24689
Q ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC------------------CCCHHHHHHHHhhcc
Q 016133 176 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAG 237 (394)
Q Consensus 176 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRag 237 (394)
||.|+.++..++++.--.|.-+|++||++++..+.+|+|.+||+-+. |-|-++-.||+||||
T Consensus 297 y~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAG 376 (674)
T KOG0922|consen 297 YGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAG 376 (674)
T ss_pred cccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCC
Confidence 99999999999988888899999999999999999999999996553 458899999999999
Q ss_pred cCCCCceEEEEEecccHHHH
Q 016133 238 RDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 238 R~g~~g~~i~l~~~~d~~~~ 257 (394)
|.| +|.|+-+|+..+...+
T Consensus 377 Rt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 377 RTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred CCC-CceEEEeeeHHHHhhc
Confidence 987 9999999998887544
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.73 E-value=8.3e-17 Score=165.82 Aligned_cols=240 Identities=19% Similarity=0.281 Sum_probs=156.8
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lSAT~~~~~~ 95 (394)
..+-+.|-|+-.+ ....|........+++|||||-|.+.+-|.+.--+ .-|.+++-... ..++|+||||+++.-
T Consensus 316 ~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~~- 391 (1008)
T KOG0950|consen 316 ESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE-LLLAKILYENLETSVQIIGMSATIPNNS- 391 (1008)
T ss_pred eeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeeccccchHHH-HHHHHHHHhccccceeEeeeecccCChH-
Confidence 3455555554322 23344444445668999999999999877553322 12333333322 456999999998753
Q ss_pred HHHHHHhCCC------CCEEEecCCCCCCeEEEEEEcCchhhHHHHHHH----------------HHHh--CCCccEEEE
Q 016133 96 KDVMESLCLQ------NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS----------------VLKA--NGDTCAIVY 151 (394)
Q Consensus 96 ~~i~~~l~~~------~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~----------------~l~~--~~~~~~IVF 151 (394)
++..+|.-. .|+.+....-..+..|... .......+.. +..+ ..+.++|||
T Consensus 392 -lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~----r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvf 466 (1008)
T KOG0950|consen 392 -LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS----RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVF 466 (1008)
T ss_pred -HHHHHhhhhheecccCcccchhccCCCcccccch----hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEE
Confidence 344555311 1111111111111222221 0111111111 1100 123359999
Q ss_pred eCcHHHHHHHHHHHHhC--------------------------------------CCceEEecCCCCHHHHHHHHHHHhc
Q 016133 152 CLERTTCDELSAYLSAG--------------------------------------GISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 152 ~~s~~~~~~l~~~L~~~--------------------------------------g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
|++++.|+.+|..+... ...++++|+|++.++|..+...|++
T Consensus 467 c~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~ 546 (1008)
T KOG0950|consen 467 CPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE 546 (1008)
T ss_pred cCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHh
Confidence 99999999998665431 1247899999999999999999999
Q ss_pred CCCeEEEeccccccccCCCCccEEEEe---c-CCCCHHHHHHHHhhcccCCC--CceEEEEEecccHHHHHHHHHhccc
Q 016133 194 SRKQVVVATVAFGMGIDRKDVRLVCHF---N-IPKSMEAFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 194 g~~~iLVaT~~~~~GiD~p~v~~VI~~---~-~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
|-+.|++||+.+..|+|.|..+++|-. + .+.+.-.|.|++|||||.|- -|.+++++.+.+.++...++....+
T Consensus 547 g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 547 GNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred cCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999999999999999999988843 2 23578899999999999984 5889999999999888888775443
No 99
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=163.08 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=98.8
Q ss_pred HHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC---------------------------------------ceEEec
Q 016133 136 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI---------------------------------------SCAAYH 176 (394)
Q Consensus 136 l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~~h 176 (394)
+...++...--|+||||-|++.|++-+++|....+ .++.+|
T Consensus 558 lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH 637 (1248)
T KOG0947|consen 558 LINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHH 637 (1248)
T ss_pred HHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhc
Confidence 33444444445799999999999999999875322 368899
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC---------CCHHHHHHHHhhcccCCC--CceE
Q 016133 177 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL--PSKS 245 (394)
Q Consensus 177 ~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p---------~s~~~y~Qr~GRagR~g~--~g~~ 245 (394)
||+-+-.++-+..-|..|-++||+||..|+||||.|.-.+|+ -.+- ..+-+|+|++|||||.|- .|++
T Consensus 638 ~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTV 716 (1248)
T KOG0947|consen 638 GGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTV 716 (1248)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceE
Confidence 999999999999999999999999999999999999766555 3322 368899999999999995 4666
Q ss_pred EEEEec--ccHHHHHHHHHh
Q 016133 246 LLYYGM--DDRRRMEFILSK 263 (394)
Q Consensus 246 i~l~~~--~d~~~~~~i~~~ 263 (394)
+++... .+...++.++-.
T Consensus 717 ii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 717 IIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred EEEecCCCCCHHHHhhHhcC
Confidence 666543 355666666543
No 100
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.72 E-value=1.1e-15 Score=164.17 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=96.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCeEEEeccccccccCCCCccEEEEe
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFGMGIDRKDVRLVCHF 220 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~iLVaT~~~~~GiD~p~v~~VI~~ 220 (394)
.+.++|||+......+.|..+|...|+....+||+++..+|..+++.|.+. ..-+|++|.+.|.|||+...++||+|
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 456899999999999999999999999999999999999999999999753 34578999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 221 NIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
|+|+++....|++||+.|-|+...+.++.
T Consensus 566 D~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 566 DSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999887765543
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1.8e-16 Score=159.06 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=138.1
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH-HHHHHhCCCCCEEEecCCCCCCe---
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK-DVMESLCLQNPLVLKSSFNRPNL--- 119 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~nl--- 119 (394)
+.+..||+||.|-|-+....--.+ .. +.-..++++.++||||+|+..+- +....+.-....++-+.+....+
T Consensus 234 rEVaWVIFDEIHYMRDkERGVVWE-ET---IIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHy 309 (1041)
T KOG0948|consen 234 REVAWVIFDEIHYMRDKERGVVWE-ET---IILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHY 309 (1041)
T ss_pred heeeeEEeeeehhccccccceeee-ee---EEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceee
Confidence 348899999999887522110000 01 22223389999999999987542 22333444444444444333222
Q ss_pred ---------EEEEEEcC-chhhHHHHH--------------------------------------HHHHHhCCCccEEEE
Q 016133 120 ---------FYEVRYKD-LLDDAYADL--------------------------------------CSVLKANGDTCAIVY 151 (394)
Q Consensus 120 ---------~~~v~~~~-~~~~~~~~l--------------------------------------~~~l~~~~~~~~IVF 151 (394)
+..|..+. ..++.+... ...+-.....++|||
T Consensus 310 ifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvF 389 (1041)
T KOG0948|consen 310 IFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVF 389 (1041)
T ss_pred eecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEE
Confidence 22221111 011112111 111122234479999
Q ss_pred eCcHHHHHHHHHHHHhCCC---------------------------------------ceEEecCCCCHHHHHHHHHHHh
Q 016133 152 CLERTTCDELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWI 192 (394)
Q Consensus 152 ~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~ 192 (394)
+-|+++|+..|-.+.+..+ .+..+||||-+--++-+.=-|.
T Consensus 390 SFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFq 469 (1041)
T KOG0948|consen 390 SFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQ 469 (1041)
T ss_pred EecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHh
Confidence 9999999999988876432 3678999999999999999999
Q ss_pred cCCCeEEEeccccccccCCCCccEEEE----ecCC----CCHHHHHHHHhhcccCCC--CceEEEEEec-ccHHHHHHHH
Q 016133 193 SSRKQVVVATVAFGMGIDRKDVRLVCH----FNIP----KSMEAFYQESGRAGRDQL--PSKSLLYYGM-DDRRRMEFIL 261 (394)
Q Consensus 193 ~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~~p----~s~~~y~Qr~GRagR~g~--~g~~i~l~~~-~d~~~~~~i~ 261 (394)
+|-+++|+||..|++|+|.|.-++|.- ||-- -|.-+|+|++|||||.|. .|.+|++++. -+....+.++
T Consensus 470 EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 470 EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred ccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 999999999999999999997665542 2211 266789999999999995 5777777764 3444555555
Q ss_pred Hh
Q 016133 262 SK 263 (394)
Q Consensus 262 ~~ 263 (394)
+.
T Consensus 550 kG 551 (1041)
T KOG0948|consen 550 KG 551 (1041)
T ss_pred cC
Confidence 53
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.70 E-value=4.9e-16 Score=169.54 Aligned_cols=107 Identities=14% Similarity=0.221 Sum_probs=88.1
Q ss_pred hCCCccEEEEeCcHHHHHHHHHHHHhC------CC---ceEEecCCCCHHHHHHHHHHHhcCCC-eEEEeccccccccCC
Q 016133 142 ANGDTCAIVYCLERTTCDELSAYLSAG------GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDR 211 (394)
Q Consensus 142 ~~~~~~~IVF~~s~~~~~~l~~~L~~~------g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~GiD~ 211 (394)
...++++||||.++++|+.+++.|.+. +. .+..+||+.+ ++..++++|+++.. .|+|+++++..|+|+
T Consensus 695 ~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv 772 (1123)
T PRK11448 695 PTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV 772 (1123)
T ss_pred ccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc
Confidence 334579999999999999999988753 22 4567898875 46789999999887 599999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHHhhcccCCC--CceEEEEEe
Q 016133 212 KDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 250 (394)
Q Consensus 212 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~ 250 (394)
|.|.+||.+.++.|...|+|++||+.|.-. .....++++
T Consensus 773 P~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 773 PSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999999999999999999643 233444443
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=3.3e-15 Score=154.80 Aligned_cols=245 Identities=17% Similarity=0.210 Sum_probs=173.7
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCC-CCHHHHHHHHHHHHhCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPD 80 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~-~fr~~~~~l~~l~~~~~~ 80 (394)
.+|.+.|..+.+|+ .+|+++|--.+.+|- .+|++|||||-|.-+-... ..|..-+.+..++....+
T Consensus 283 ~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 283 GERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKEN 349 (730)
T ss_pred HHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhC
Confidence 47889999999997 999999988777774 4599999999998764322 245555788889998889
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC---CCCCeEE-EEEEcC------chhhHHHHHHHHHHhCCCccEEE
Q 016133 81 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFY-EVRYKD------LLDDAYADLCSVLKANGDTCAIV 150 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~nl~~-~v~~~~------~~~~~~~~l~~~l~~~~~~~~IV 150 (394)
+|+|+-|||++-+....+.+ +......+..-. ..|++.+ .++... .....++.+.+.+. .+.++|+
T Consensus 350 ~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~geQ~ll 425 (730)
T COG1198 350 APVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--RGEQVLL 425 (730)
T ss_pred CCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--cCCeEEE
Confidence 99999999998877664421 111111111111 1333322 122111 11233444444443 3568899
Q ss_pred EeCcH------------------------------------------------------------HHHHHHHHHHHhC--
Q 016133 151 YCLER------------------------------------------------------------TTCDELSAYLSAG-- 168 (394)
Q Consensus 151 F~~s~------------------------------------------------------------~~~~~l~~~L~~~-- 168 (394)
|.|.+ -.++.+++.|.+.
T Consensus 426 flnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP 505 (730)
T COG1198 426 FLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP 505 (730)
T ss_pred EEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC
Confidence 98887 4567777777765
Q ss_pred CCceEEecCCCCHHH--HHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------CHHHHHHHHh
Q 016133 169 GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESG 234 (394)
Q Consensus 169 g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------s~~~y~Qr~G 234 (394)
+.++..+.++.+... -...+..|.+|+.+|||.|+++..|.|+|++..|...+.-. ....+.|-+|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaG 585 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHh
Confidence 667888888776543 45789999999999999999999999999999988666432 3456789999
Q ss_pred hcccCCCCceEEEEEecccHHHHHHHHHh
Q 016133 235 RAGRDQLPSKSLLYYGMDDRRRMEFILSK 263 (394)
Q Consensus 235 RagR~g~~g~~i~l~~~~d~~~~~~i~~~ 263 (394)
||||.+++|.+++-....|...++.+...
T Consensus 586 RAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 586 RAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred hhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 99999999999998877776666665543
No 104
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.67 E-value=2e-15 Score=147.16 Aligned_cols=196 Identities=23% Similarity=0.348 Sum_probs=140.1
Q ss_pred EEEEecCCccc-cCCCCCHHHHHHHHHHHHh---CC----------------CCCEEEEeecCChhHHHHHHHHh-CCCC
Q 016133 48 LVAIDEAHCIS-SWGHDFRPSYRKLSSLRNY---LP----------------DVPILALTATAAPKVQKDVMESL-CLQN 106 (394)
Q Consensus 48 ~iVvDEaH~l~-~~g~~fr~~~~~l~~l~~~---~~----------------~~~~l~lSAT~~~~~~~~i~~~l-~~~~ 106 (394)
++||||.|... +.+.-|+.+..+-..|... +| ..|+++.|||+.+.-.. ..- ..-.
T Consensus 334 Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~e---~s~~~vve 410 (663)
T COG0556 334 LLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYELE---QSGGNVVE 410 (663)
T ss_pred EEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEEEECCCChHHHH---hccCceeE
Confidence 68999999744 4333333333332222221 11 36899999998876443 111 1111
Q ss_pred CEEEecCCCCCCeEEEEEEcC-chhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHH
Q 016133 107 PLVLKSSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 185 (394)
Q Consensus 107 ~~~~~~~~~~~nl~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~ 185 (394)
.++-.++...|.+ .+++.. -.++.+..+..-.+ .+.+++|-+-|++.++.|.++|.+.|+++.++|++...-+|.
T Consensus 411 QiIRPTGLlDP~i--evRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~ 486 (663)
T COG0556 411 QIIRPTGLLDPEI--EVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERV 486 (663)
T ss_pred EeecCCCCCCCce--eeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHH
Confidence 1122233444433 333322 12344444444433 356899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC-----CCHHHHHHHHhhcccCCCCceEEEEEec
Q 016133 186 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 186 ~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p-----~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
+++..++.|..+|||+-+.+-.|+|+|.|.+|..+|.. .|-.+++|-+|||+|.- .|.++++.+.
T Consensus 487 eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~ 556 (663)
T COG0556 487 EIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADK 556 (663)
T ss_pred HHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchh
Confidence 99999999999999999999999999999999998854 58999999999999964 6788877654
No 105
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=5.1e-16 Score=118.17 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=78.0
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC
Q 016133 160 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239 (394)
Q Consensus 160 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 239 (394)
.+++.|+..++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 016133 240 Q 240 (394)
Q Consensus 240 g 240 (394)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.64 E-value=3.4e-15 Score=158.41 Aligned_cols=199 Identities=20% Similarity=0.238 Sum_probs=135.7
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecC----CCCCCeEE
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFY 121 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~nl~~ 121 (394)
.+++|+||+|.+.+.. .-.....+-.+... -+.++|++|||+|+.....+...++.........+ .+.+.+..
T Consensus 339 ~S~vIlDE~h~~~~~~--~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~ 415 (733)
T COG1203 339 TSLVILDEVHLYADET--MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKR 415 (733)
T ss_pred hhchhhccHHhhcccc--hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccc
Confidence 5679999999887653 12222222222222 28999999999999999888887765544333322 12222211
Q ss_pred EEEEcCchhhHHHHHHHHH--HhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh----cCC
Q 016133 122 EVRYKDLLDDAYADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSR 195 (394)
Q Consensus 122 ~v~~~~~~~~~~~~l~~~l--~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~ 195 (394)
.... .........+.... ....+.+++|-|||+..|.+++..|+..+..+..+||.+...+|.+.++.+. .+.
T Consensus 416 ~~~~-~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~ 494 (733)
T COG1203 416 KERV-DVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNE 494 (733)
T ss_pred ccch-hhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccC
Confidence 1111 10011000111111 2235678999999999999999999998878999999999999998877654 578
Q ss_pred CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC--CCceEEEEEec
Q 016133 196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYGM 251 (394)
Q Consensus 196 ~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~ 251 (394)
..|+|||++.+.|+|+. .+. .+.-+..+.+.+||+||++|.| ..|..+++...
T Consensus 495 ~~IvVaTQVIEagvDid-fd~--mITe~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 495 GFIVVATQVIEAGVDID-FDV--LITELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred CeEEEEeeEEEEEeccc-cCe--eeecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 88999999999999974 443 4455677999999999999999 56777666543
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=9.8e-15 Score=145.13 Aligned_cols=214 Identities=18% Similarity=0.259 Sum_probs=152.5
Q ss_pred eecChHHH-HHHHhhccCCCccEEEEecCCccccCCCCCHHH--HHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS--YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~-~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~--~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
..+|.|.+ ..+..-..+...++|||||||.-. ...+ +.-+..+....|+..+++.|||+..+-.. ..
T Consensus 359 KYMTDGmLlREfL~epdLasYSViiiDEAHERT-----L~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS---~f-- 428 (902)
T KOG0923|consen 359 KYMTDGMLLREFLSEPDLASYSVIIVDEAHERT-----LHTDILFGLVKDIARFRPDLKLLISSATMDAEKFS---AF-- 428 (902)
T ss_pred eeecchhHHHHHhccccccceeEEEeehhhhhh-----hhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHH---Hh--
Confidence 34677744 445666667778999999999632 2222 22345555666899999999999876543 32
Q ss_pred CCCCEEEecCCCCCC--eEEEEEEc-CchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC---------CCc
Q 016133 104 LQNPLVLKSSFNRPN--LFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GIS 171 (394)
Q Consensus 104 ~~~~~~~~~~~~~~n--l~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------g~~ 171 (394)
+.+..++..+-.|-. ++|.-.+. +..+..+..+.++....+.+-+|||....++.+...+.|.+. .+-
T Consensus 429 FDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eli 508 (902)
T KOG0923|consen 429 FDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELI 508 (902)
T ss_pred ccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEE
Confidence 344445555444333 33332221 112223333333333456678999999988888777777653 234
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC------------------CCCHHHHHHHH
Q 016133 172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQES 233 (394)
Q Consensus 172 ~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~ 233 (394)
+.++|++||.+.+.++++.--.|--+|++||+++...+.+++|.+||.-+. |-|-++-.||+
T Consensus 509 v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRa 588 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRA 588 (902)
T ss_pred EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhc
Confidence 789999999999999998888899999999999999999999999996554 45778889999
Q ss_pred hhcccCCCCceEEEEEec
Q 016133 234 GRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 234 GRagR~g~~g~~i~l~~~ 251 (394)
|||||.| ||.|+-+|+.
T Consensus 589 GRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 589 GRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cccCCCC-CCceEEeech
Confidence 9999998 9999999984
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=7.6e-14 Score=146.12 Aligned_cols=166 Identities=23% Similarity=0.243 Sum_probs=136.8
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEE---EEEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
.+.+||+|+..+. ..+.+..++ .++..++++|.+... ..+. ....++..+...+.. ..++|+||||+|++
T Consensus 367 kl~GmTGTa~te~-~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEA-EEFREIYNL---DVVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHH-HHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 5678999986543 344454444 367778888877654 2222 235678888887755 56789999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCc----------------------
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------- 214 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v---------------------- 214 (394)
.++.++..|.+.|+++..+||. +.+|+..+.+|..+...|+|||+++|||+|++-=
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999995 7789999999999999999999999999998642
Q ss_pred ----------------cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 215 ----------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 215 ----------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
=+||.-..|.|..-=-|-.||+||.|.||.+..|++-+|-
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1788888999999999999999999999999999998774
No 109
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=1.1e-14 Score=142.61 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=161.6
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC---CCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL---PDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~---~~~~~l~lSAT~~~~ 93 (394)
.+++|..|.++.|......+.-.+..-.+.++++||+|...- .|.--...+++|..+..-+ .+.+++-.+||....
T Consensus 385 ~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~ 464 (1034)
T KOG4150|consen 385 LNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDR 464 (1034)
T ss_pred cceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCH
Confidence 689999998777665444443323333356789999997653 2322233445555554443 278888889998777
Q ss_pred HHHHHHHHhCCCCCEEEecCCCCCC-eEEEEEEcC-------chhhHHHH----HHHHHHhCCCccEEEEeCcHHHHHHH
Q 016133 94 VQKDVMESLCLQNPLVLKSSFNRPN-LFYEVRYKD-------LLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDEL 161 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~~~~~n-l~~~v~~~~-------~~~~~~~~----l~~~l~~~~~~~~IVF~~s~~~~~~l 161 (394)
++. .....++.+...+...-.... -.+.+...+ ....+... +.+++. .+-++|-||.+++-|+-+
T Consensus 465 ~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~ 541 (1034)
T KOG4150|consen 465 TRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELV 541 (1034)
T ss_pred HHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHH
Confidence 654 345556666554443222222 222222111 11122222 333333 345899999999999887
Q ss_pred HHHHHhC----C----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHH
Q 016133 162 SAYLSAG----G----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 233 (394)
Q Consensus 162 ~~~L~~~----g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 233 (394)
-...++. | -.+..|.||...++|.++...+-.|++.-+|||++++.|||+...+.|++.++|.|++.+.|..
T Consensus 542 ~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 542 LCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQA 621 (1034)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHh
Confidence 6655432 1 1357899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCceEEEEEe--cccHHHH
Q 016133 234 GRAGRDQLPSKSLLYYG--MDDRRRM 257 (394)
Q Consensus 234 GRagR~g~~g~~i~l~~--~~d~~~~ 257 (394)
|||||..+++.++.+.. |-|...+
T Consensus 622 GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 622 GRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred ccccccCCCceEEEEEeccchhhHhh
Confidence 99999999988766654 4444443
No 110
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.60 E-value=4.4e-14 Score=149.76 Aligned_cols=202 Identities=26% Similarity=0.289 Sum_probs=133.0
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC--CCCEEEecCCCCC-
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRP- 117 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~~- 117 (394)
....+..||+||+|++.+.. |... ...+.-.+| ++++++||||.++..+ +..|++. ..+..+.....||
T Consensus 226 ~~~~i~~ViFDEvHyi~D~e---RG~V--WEE~Ii~lP~~v~~v~LSATv~N~~E--F~~Wi~~~~~~~~~vv~t~~Rpv 298 (1041)
T COG4581 226 SLRDIEWVVFDEVHYIGDRE---RGVV--WEEVIILLPDHVRFVFLSATVPNAEE--FAEWIQRVHSQPIHVVSTEHRPV 298 (1041)
T ss_pred cccccceEEEEeeeeccccc---cchh--HHHHHHhcCCCCcEEEEeCCCCCHHH--HHHHHHhccCCCeEEEeecCCCC
Confidence 34568899999999998744 3222 222444555 6799999999887754 3455542 2333333332222
Q ss_pred CeEEEEEEcC-------chh----h------------------------------------------HHHHHHHHHHhCC
Q 016133 118 NLFYEVRYKD-------LLD----D------------------------------------------AYADLCSVLKANG 144 (394)
Q Consensus 118 nl~~~v~~~~-------~~~----~------------------------------------------~~~~l~~~l~~~~ 144 (394)
.+.+.+.... ... . ..-.+...+....
T Consensus 299 PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~ 378 (1041)
T COG4581 299 PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDN 378 (1041)
T ss_pred CeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhc
Confidence 2221111110 000 0 0011222333334
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----------------------------CC-------------ceEEecCCCCHHH
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----------------------------GI-------------SCAAYHAGLNDKA 183 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----------------------------g~-------------~~~~~h~~l~~~~ 183 (394)
.-++|+|+-|++.|+..+..+... ++ .++.+|+||=+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 457999999999999988777521 11 2468999999999
Q ss_pred HHHHHHHHhcCCCeEEEeccccccccCCCCccEEE----Eec----CCCCHHHHHHHHhhcccCCCC--ceEEEEEe
Q 016133 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN----IPKSMEAFYQESGRAGRDQLP--SKSLLYYG 250 (394)
Q Consensus 184 R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI----~~~----~p~s~~~y~Qr~GRagR~g~~--g~~i~l~~ 250 (394)
|..+.+.|..|-++|++||.++++|+|.|.-++|+ .++ -+-+...|.|..|||||.|.. |.+++...
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 99999999999999999999999999999655554 333 235899999999999999954 66666643
No 111
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.6e-15 Score=148.39 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=153.4
Q ss_pred eecChHHH-HHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-------CCCEEEEeecCChhHHHHH
Q 016133 27 LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDV 98 (394)
Q Consensus 27 ~v~tp~~~-~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lSAT~~~~~~~~i 98 (394)
.++|.|.+ ..+..-+-+.+.+.|||||||.-+-+..-.-.-+.++-.||.... ...+|+||||+.-.....-
T Consensus 353 kFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFten 432 (1172)
T KOG0926|consen 353 KFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTEN 432 (1172)
T ss_pred EEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccC
Confidence 56788854 445666667788999999999765332212222344555555442 4578999999876543322
Q ss_pred HHHhCCCCCEEEecCCCCCCeEEEEEEc---CchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-----C-
Q 016133 99 MESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-----G- 169 (394)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~nl~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-----g- 169 (394)
...+.+..| ++......-.+..+.... +...+.+...+.+.+..+.+.+|||+....+++++++.|++. +
T Consensus 433 k~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~ 511 (1172)
T KOG0926|consen 433 KRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGG 511 (1172)
T ss_pred ceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCcccccc
Confidence 233334444 444443332232222222 223455666677777788899999999999999999999863 1
Q ss_pred C-------------------------------------------------------------------------------
Q 016133 170 I------------------------------------------------------------------------------- 170 (394)
Q Consensus 170 ~------------------------------------------------------------------------------- 170 (394)
.
T Consensus 512 ~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~ 591 (1172)
T KOG0926|consen 512 VKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQ 591 (1172)
T ss_pred chhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhch
Confidence 0
Q ss_pred --------------ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------
Q 016133 171 --------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------ 224 (394)
Q Consensus 171 --------------~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------ 224 (394)
.|.++++-|+.+.+.+++..--.|.--++|||+++...+.+|+|++||.-+.-+
T Consensus 592 E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~ 671 (1172)
T KOG0926|consen 592 EAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSS 671 (1172)
T ss_pred hhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCcee
Confidence 145555667777777777777778888999999999999999999999766432
Q ss_pred ------CHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 225 ------SMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 225 ------s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
|-++--||+|||||-| +|+|+-+|+..
T Consensus 672 FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 672 FEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 4455679999999998 99999999754
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=3.2e-13 Score=141.36 Aligned_cols=167 Identities=20% Similarity=0.177 Sum_probs=133.1
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
++-+||+|+..+. ..+.+..++ .++..+.++|.+..... .......++..+.+.+.. ..++|+||||+|++.
T Consensus 386 kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 4678899987654 334444444 36777888886644322 112234566665555542 357899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCC------------------------
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------ 213 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~------------------------ 213 (394)
++.++..|.+.|++...+|+.+++.++..+.+.|+.|. |+|||+++|||.|+.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999862
Q ss_pred --------c-----cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 214 --------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 214 --------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
| =+||--..+.|..-=-|-.|||||.|.||.+..|++-+|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2688888888988889999999999999999999998775
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2e-13 Score=143.20 Aligned_cols=167 Identities=20% Similarity=0.172 Sum_probs=133.1
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHH--hCCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~--~~~~~~~IVF~~s~~~ 157 (394)
.+-+||+|+..+. ..+.+..++ .++..++++|.+..... .......++..+.+.+. ...++|+||||+|++.
T Consensus 381 kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEA-YEFQQIYNL---EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHH-HHHHHHhCC---CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 4678999986543 344444444 47778888887654321 11223556666665553 2467899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCC------------------------
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------ 213 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~------------------------ 213 (394)
++.++..|.+.|++...+||.+.+.++..+.++|+.|. |+|||+++|||+|+.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999994 9999999999999862
Q ss_pred ---------c-----cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 214 ---------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 214 ---------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
| =+||--..+.|..-=-|-.||+||.|.||.+..|++-+|.
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 1688888888888889999999999999999999998774
No 114
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=144.90 Aligned_cols=216 Identities=16% Similarity=0.156 Sum_probs=142.8
Q ss_pred eecChHHHHH-HHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 27 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 27 ~v~tp~~~~~-l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
...|.|.+.+ ...-..+.+.+.||+||||.-+-.. | -.+.-|..+.....+..+|..|||+..... ..++| .
T Consensus 449 kymTDGiLLrEsL~d~~L~kYSviImDEAHERslNt-D--ilfGllk~~larRrdlKliVtSATm~a~kf---~nfFg-n 521 (1042)
T KOG0924|consen 449 KYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNT-D--ILFGLLKKVLARRRDLKLIVTSATMDAQKF---SNFFG-N 521 (1042)
T ss_pred EEeccchHHHHHhhhhhhhheeEEEechhhhcccch-H--HHHHHHHHHHHhhccceEEEeeccccHHHH---HHHhC-C
Confidence 3456765433 2333345668899999999755211 1 112233344445558999999999987644 45555 2
Q ss_pred CCEEEecCCC-CCCeEEEEEEcCchhhHHHHHHHHHH---hCCCccEEEEeCcHHHHHHHHHHHH----hC------CCc
Q 016133 106 NPLVLKSSFN-RPNLFYEVRYKDLLDDAYADLCSVLK---ANGDTCAIVYCLERTTCDELSAYLS----AG------GIS 171 (394)
Q Consensus 106 ~~~~~~~~~~-~~nl~~~v~~~~~~~~~~~~l~~~l~---~~~~~~~IVF~~s~~~~~~l~~~L~----~~------g~~ 171 (394)
-|.....+-. .-++.|. ..+..+..-..+.+.+. ..+.+-++||....+..+..+..++ +. ++.
T Consensus 522 ~p~f~IpGRTyPV~~~~~--k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~ 599 (1042)
T KOG0924|consen 522 CPQFTIPGRTYPVEIMYT--KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLA 599 (1042)
T ss_pred CceeeecCCccceEEEec--cCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceE
Confidence 2222211111 1112221 11111222233333332 2345679999988776655554443 32 577
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC------------------CCCHHHHHHHH
Q 016133 172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQES 233 (394)
Q Consensus 172 ~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~ 233 (394)
+.++++.|+...+.++++.-..|.-++||||++++..+.+|+|.+||.-+. |-|-+.-.||+
T Consensus 600 vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRa 679 (1042)
T KOG0924|consen 600 VLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRA 679 (1042)
T ss_pred EEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhc
Confidence 999999999999999988888899999999999999999999999997663 55778889999
Q ss_pred hhcccCCCCceEEEEEecc
Q 016133 234 GRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 234 GRagR~g~~g~~i~l~~~~ 252 (394)
|||||.| +|.|+-+|+.+
T Consensus 680 GRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 680 GRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccCCCC-Ccceeeehhhh
Confidence 9999998 99999999864
No 115
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.50 E-value=2.5e-13 Score=142.72 Aligned_cols=221 Identities=18% Similarity=0.190 Sum_probs=151.8
Q ss_pred eecChHH-HHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 27 LTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 27 ~v~tp~~-~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
.+.|.|. +..|........+..||+||+|.-+... ||--.+. ..+....|+.++|+||||+..+... .+++ .
T Consensus 268 ~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~-DflLi~l--k~lL~~~p~LkvILMSAT~dae~fs---~YF~-~ 340 (924)
T KOG0920|consen 268 LFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINT-DFLLILL--KDLLPRNPDLKVILMSATLDAELFS---DYFG-G 340 (924)
T ss_pred EEecHHHHHHHhccCcccccCceeeeeeEEEccCCc-ccHHHHH--HHHhhhCCCceEEEeeeecchHHHH---HHhC-C
Confidence 3455554 4455565667789999999999876543 5554433 3366667999999999999865443 4444 2
Q ss_pred CCEEEecCCCCCC-------------------eEEEEE-------------EcCchhhHHHHHHHHHH-hCCCccEEEEe
Q 016133 106 NPLVLKSSFNRPN-------------------LFYEVR-------------YKDLLDDAYADLCSVLK-ANGDTCAIVYC 152 (394)
Q Consensus 106 ~~~~~~~~~~~~n-------------------l~~~v~-------------~~~~~~~~~~~l~~~l~-~~~~~~~IVF~ 152 (394)
-|++...+..-|- -.+... ..+...+.+..+...+. ....+.+|||.
T Consensus 341 ~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFL 420 (924)
T KOG0920|consen 341 CPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFL 420 (924)
T ss_pred CceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEc
Confidence 2332222211110 000000 00111123333333333 33467899999
Q ss_pred CcHHHHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC---
Q 016133 153 LERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--- 222 (394)
Q Consensus 153 ~s~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--- 222 (394)
+...+...+.+.|... .+-+..+|+.|+..+...++..--.|.-+||+||++++..|.++||-+||+.+.
T Consensus 421 PG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke 500 (924)
T KOG0920|consen 421 PGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKE 500 (924)
T ss_pred CCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeee
Confidence 9999999999999753 245789999999999999999888999999999999999999999999996553
Q ss_pred -----CC----------CHHHHHHHHhhcccCCCCceEEEEEecccHH
Q 016133 223 -----PK----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 223 -----p~----------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
-. |-+.-.||.|||||. .+|.|+-+|+.....
T Consensus 501 ~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 501 KSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred eeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 22 445568999999997 489999999875443
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.7e-12 Score=133.68 Aligned_cols=201 Identities=19% Similarity=0.295 Sum_probs=135.4
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCC---------CHHH-----
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD---------FRPS----- 67 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~---------fr~~----- 67 (394)
++|+++++.+.+|. ++|++ .|.+|+..-.......++++|+||.+|-++.-+.. |-.+
T Consensus 168 ~ekee~le~i~~gd--fdIli------tTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a 239 (1187)
T COG1110 168 KEKEEALERIESGD--FDILI------TTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESA 239 (1187)
T ss_pred HHHHHHHHHHhcCC--ccEEE------EeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHH
Confidence 47889999999996 99995 55566655433333356999999999987753321 2111
Q ss_pred ---------------HHHHHHHHH---------hCCCCCEEEEeecCChhH-HHH-HHHHhCCCCCEEEecCCCCCCeEE
Q 016133 68 ---------------YRKLSSLRN---------YLPDVPILALTATAAPKV-QKD-VMESLCLQNPLVLKSSFNRPNLFY 121 (394)
Q Consensus 68 ---------------~~~l~~l~~---------~~~~~~~l~lSAT~~~~~-~~~-i~~~l~~~~~~~~~~~~~~~nl~~ 121 (394)
+.++..+.. ......++..|||..+.- +.. +...|++.-.. ......|+.-
T Consensus 240 ~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~---~~~~LRNIvD 316 (1187)
T COG1110 240 YELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS---GGEGLRNIVD 316 (1187)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc---cchhhhheee
Confidence 111111111 112456888899977654 222 33444443211 1112223322
Q ss_pred EEEEcCchhhHHHHHHHHHHhCCCccEEEEeCc---HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 016133 122 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198 (394)
Q Consensus 122 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s---~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~i 198 (394)
..... ...+.+.++++..+. -+|||++. ++.+++++++|+..|+++..+|++ ..+.++.|..|++++
T Consensus 317 ~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~Geidv 386 (1187)
T COG1110 317 IYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDV 386 (1187)
T ss_pred eeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeE
Confidence 11111 455666677777655 48999999 999999999999999999999994 367899999999999
Q ss_pred EEec----cccccccCCCC-ccEEEEecCC
Q 016133 199 VVAT----VAFGMGIDRKD-VRLVCHFNIP 223 (394)
Q Consensus 199 LVaT----~~~~~GiD~p~-v~~VI~~~~p 223 (394)
||++ .++-||+|+|. ++++|.|+.|
T Consensus 387 LVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 387 LVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEEecccccceeecCCchhheeEEEEecCC
Confidence 9986 47899999996 7899999988
No 117
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.40 E-value=1.6e-11 Score=124.40 Aligned_cols=234 Identities=18% Similarity=0.168 Sum_probs=166.0
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
.+|..+.+++.... .++|+++|-|++.... ..|.+ -.+.++||||||++-... ..|..+.+.+.-.
T Consensus 253 ~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk--~~lk~----~~W~ylvIDEaHRiKN~~-------s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 253 EERAALRRDIMLPG-RFDVCITSYEIAIKDK--SFLKK----FNWRYLVIDEAHRIKNEK-------SKLSKILREFKTD 318 (971)
T ss_pred HHHHHHHHHhhccC-CCceEeehHHHHHhhH--HHHhc----CCceEEEechhhhhcchh-------hHHHHHHHHhccc
Confidence 36777777776664 5999999999775442 22222 348999999999987543 3555666677777
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecC------C----------------------------------CCCCeEE
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSS------F----------------------------------NRPNLFY 121 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~----------------------------------~~~nl~~ 121 (394)
..+++|+|+-..-...+...|.+--|.++... + ..|...+
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 78999999877666655555554333333210 0 0000000
Q ss_pred EEEE---------------------------------------------------cCc------------hhhHHHHHHH
Q 016133 122 EVRY---------------------------------------------------KDL------------LDDAYADLCS 138 (394)
Q Consensus 122 ~v~~---------------------------------------------------~~~------------~~~~~~~l~~ 138 (394)
.+.. ..+ ...++..|.+
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHH
Confidence 0000 000 0011122333
Q ss_pred HHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCeEEEeccccccccCCCC
Q 016133 139 VLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFGMGIDRKD 213 (394)
Q Consensus 139 ~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~iLVaT~~~~~GiD~p~ 213 (394)
+|.. ..+.++|||..-....+-+-.+..-+++...-+.|.++.++|...++.|... ..-.|++|-|.|.|||+..
T Consensus 479 LL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 479 LLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred HHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 3322 2466899999998988989889888999999999999999999999999854 3457899999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 214 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 214 v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
.++||.||-.+++..=+|..-||.|-|+...+.+|-
T Consensus 559 ADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 559 ADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred ccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 999999999999999999999999999888776663
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=3.2e-11 Score=118.48 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=101.2
Q ss_pred HHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhc--CCCeEEEeccccccccCCCC
Q 016133 137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKD 213 (394)
Q Consensus 137 ~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~--g~~~iLVaT~~~~~GiD~p~ 213 (394)
..-+++..++-+|| |-|++..-.+...+.+.|.. ++.++|++|++.|.+--..|.+ ++.+|||||||+|||+|+ +
T Consensus 349 ~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~ 426 (700)
T KOG0953|consen 349 LGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-N 426 (700)
T ss_pred hhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-c
Confidence 33445544444544 67888899999999988766 9999999999999999999986 899999999999999998 7
Q ss_pred ccEEEEecCC---------CCHHHHHHHHhhcccCCC---CceEEEEEecccHHHHHHHHHhc
Q 016133 214 VRLVCHFNIP---------KSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 214 v~~VI~~~~p---------~s~~~y~Qr~GRagR~g~---~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
|+-||.+++- -+..+..|.+|||||.|. .|.+..+ ..+|...++.+++..
T Consensus 427 IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 427 IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRILKRP 488 (700)
T ss_pred eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHHhCC
Confidence 9999988864 467889999999999873 3555555 456888888888743
No 119
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.34 E-value=8.6e-11 Score=113.81 Aligned_cols=209 Identities=18% Similarity=0.258 Sum_probs=138.2
Q ss_pred cChHHHH-HHHhhccCCCccEEEEecCCccccCCCCCHHHH--HHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 29 ATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 29 ~tp~~~~-~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~--~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
.|.|.+. .......++..++||+||||.-+ ...+. .-|..++...|+.+++.+|||+.....+ .++ .
T Consensus 142 ~tDgmLlrEams~p~l~~y~viiLDeahERt-----lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq---~yf--~ 211 (699)
T KOG0925|consen 142 CTDGMLLREAMSDPLLGRYGVIILDEAHERT-----LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ---RYF--G 211 (699)
T ss_pred hcchHHHHHHhhCcccccccEEEechhhhhh-----HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHH---HHh--C
Confidence 4665332 23444556779999999999633 22222 2355666667899999999998766443 333 2
Q ss_pred CCEEEecCCCCC-CeEEEEE-EcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC---------CCceEE
Q 016133 106 NPLVLKSSFNRP-NLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAA 174 (394)
Q Consensus 106 ~~~~~~~~~~~~-nl~~~v~-~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------g~~~~~ 174 (394)
++-++..+-..| .++|.-. ..+..+..+..+.++......+-++||....++.+..++.+... .+.+.+
T Consensus 212 n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~P 291 (699)
T KOG0925|consen 212 NAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVP 291 (699)
T ss_pred CCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEe
Confidence 333333332222 2333221 12223344455555555556778999999999998888888742 245777
Q ss_pred ecCCCCHHHHHHHHHHHh---cC--CCeEEEeccccccccCCCCccEEEEecC------------------CCCHHHHHH
Q 016133 175 YHAGLNDKARSSVLDDWI---SS--RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQ 231 (394)
Q Consensus 175 ~h~~l~~~~R~~~~~~f~---~g--~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q 231 (394)
+| +.+...+++..- +| .-+|+|+|+++...+-++.|.+||.-++ |-|-.+-.|
T Consensus 292 Ly----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~q 367 (699)
T KOG0925|consen 292 LY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 367 (699)
T ss_pred cC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHH
Confidence 77 444444444332 12 2469999999999999999999997664 557788899
Q ss_pred HHhhcccCCCCceEEEEEecc
Q 016133 232 ESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 232 r~GRagR~g~~g~~i~l~~~~ 252 (394)
|.|||||. .+|.|+-+|...
T Consensus 368 R~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 368 RAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred HhhhccCC-CCCceEEeecHH
Confidence 99999996 599999999864
No 120
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=119.94 Aligned_cols=89 Identities=27% Similarity=0.292 Sum_probs=69.9
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec-CCCCHHHHHHHHhhcccCCCC--ceEEEE
Q 016133 172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-IPKSMEAFYQESGRAGRDQLP--SKSLLY 248 (394)
Q Consensus 172 ~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~-~p~s~~~y~Qr~GRagR~g~~--g~~i~l 248 (394)
+..+|+||+...|..+.--|+.|...||+||..++.|||.|.-++|.--| +..++-.|-|++|||||.|-. |.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 58899999999999999999999999999999999999999655555544 456889999999999999854 444433
Q ss_pred EecccHHHHHHHHH
Q 016133 249 YGMDDRRRMEFILS 262 (394)
Q Consensus 249 ~~~~d~~~~~~i~~ 262 (394)
--| ..++..++.
T Consensus 1045 giP--~~kv~rLlt 1056 (1330)
T KOG0949|consen 1045 GIP--RQKVQRLLT 1056 (1330)
T ss_pred eCc--HHHHHHHHH
Confidence 222 344444443
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=3.2e-10 Score=118.22 Aligned_cols=165 Identities=17% Similarity=0.215 Sum_probs=122.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE---EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~---~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
++-+||+|+..+. ..+.+..++ .++..++++|.++.... +. ....++..+.+.+.. ..++|+||.|.|++
T Consensus 363 kLsGMTGTA~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEE-QEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHH-HHHHHHhCC---CEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 5778999986543 334444443 47778888887654422 22 224555555554432 36789999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEeccccccccCCCCcc--------EEEEecCCCCHH
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSME 227 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p~v~--------~VI~~~~p~s~~ 227 (394)
..+.++..|.+.|++...+++.-...+-. ++. ..| .-.|.|||+++|||.|+.--. +||....|.|..
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrR 514 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRR 514 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccchhhHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHH
Confidence 99999999999999998898864433322 222 345 456999999999999986432 899999999988
Q ss_pred HHHHHHhhcccCCCCceEEEEEecccH
Q 016133 228 AFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 228 ~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
-=-|-.||+||.|.||.+..|++-+|.
T Consensus 515 IDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 515 IDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HHHHHhcccccCCCCCcceEEEecchH
Confidence 888999999999999999999987764
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.22 E-value=2.1e-09 Score=113.35 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=75.1
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHH---------------------HHHHHHHHHhc-CCCe
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQ 197 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~ 197 (394)
+++++|||.++..|..+++.|.+. +..+..+++..+.. ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999998664 24455666654332 12468888976 6889
Q ss_pred EEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhccc
Q 016133 198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 238 (394)
Q Consensus 198 iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR 238 (394)
|||.++++..|+|.|.+.+++...+-++. .++|.+||+.|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 99999999999999999998888766665 58999999999
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.21 E-value=6.1e-11 Score=121.90 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=79.9
Q ss_pred HHHHHHHh--CC--CccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhc--CCCeEEEecc
Q 016133 135 DLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATV 203 (394)
Q Consensus 135 ~l~~~l~~--~~--~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~iLVaT~ 203 (394)
.+...++. .+ .+|+||||.+..+|+.+.+.|... |--+..+.+.-... ...+..|.. .-.+|.|+.+
T Consensus 412 ~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehh
Confidence 34445544 22 468999999999999999999864 33355666654333 344556654 3456999999
Q ss_pred ccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC
Q 016133 204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239 (394)
Q Consensus 204 ~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 239 (394)
++..|||+|.|..++.+..-.|...|.|++||+-|.
T Consensus 490 lL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 490 LLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999999999999999999984
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=3.8e-09 Score=108.90 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=123.8
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEE---EEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
.+-+||+|+.... ..+.+..++. ++..++++|.+.... .+. ....++..+.+.+.. ..++|+||.+.|++
T Consensus 364 kLsGMTGTa~t~~-~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~ 438 (764)
T PRK12326 364 TVCGMTGTAVAAG-EQLRQFYDLG---VSVIPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVA 438 (764)
T ss_pred hheeecCCChhHH-HHHHHHhCCc---EEECCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHH
Confidence 5789999986554 3455555544 667788888765432 222 234566655554432 36789999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CeEEEeccccccccCCCC----------c-----cEEEEe
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD----------V-----RLVCHF 220 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~----------v-----~~VI~~ 220 (394)
..+.++..|.+.|++...+++.-...+-..+-+ .|+ -.|.|||+++|||.|+.- | =+||-.
T Consensus 439 ~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgT 515 (764)
T PRK12326 439 ESEELAERLRAAGVPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGT 515 (764)
T ss_pred HHHHHHHHHHhCCCcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEec
Confidence 999999999999999999998755444222222 343 458999999999999862 2 279999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCceEEEEEecccHH
Q 016133 221 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 255 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 255 (394)
..|.|..-=-|-.||+||.|.||.+..|++-+|.-
T Consensus 516 erheSrRID~QLrGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 516 GRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred cCCchHHHHHHHhcccccCCCCCceeEEEEcchhH
Confidence 99999999999999999999999999999987743
No 125
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.19 E-value=2.9e-09 Score=111.20 Aligned_cols=235 Identities=13% Similarity=0.033 Sum_probs=144.8
Q ss_pred chHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccC-CCCCHHHHHHHHHHHHhCCC
Q 016133 2 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLPD 80 (394)
Q Consensus 2 ~~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~-g~~fr~~~~~l~~l~~~~~~ 80 (394)
++|.+.|..+.+|+ .+|+++|--.+..|- .++++|||||-|.-+-. ....+..-+.+..++....+
T Consensus 227 ~~R~~~w~~~~~G~--~~IViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~ 293 (665)
T PRK14873 227 ADRYRRWLAVLRGQ--ARVVVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHG 293 (665)
T ss_pred HHHHHHHHHHhCCC--CcEEEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcC
Confidence 47888999999997 899999998777763 56899999999976532 12234445778888888889
Q ss_pred CCEEEEeecCChhHHHHHHHHhCC-CCCEEEecCCCCCCeEEEEEEc-----C-------chhhHHHHHHHHHHhCCCcc
Q 016133 81 VPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYK-----D-------LLDDAYADLCSVLKANGDTC 147 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~-~~~~~~~~~~~~~nl~~~v~~~-----~-------~~~~~~~~l~~~l~~~~~~~ 147 (394)
+++|+.|||++-+....+...... -....-......|.+...-... + .....++.+.+.++. + +
T Consensus 294 ~~lvLgSaTPSles~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~--g-q 370 (665)
T PRK14873 294 CALLIGGHARTAEAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH--G-P 370 (665)
T ss_pred CcEEEECCCCCHHHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc--C-c
Confidence 999999999998876543321100 0000000111223332221100 0 112344455555442 4 8
Q ss_pred EEEEeCcH-----------------------------------------------------------HHHHHHHHHHHhC
Q 016133 148 AIVYCLER-----------------------------------------------------------TTCDELSAYLSAG 168 (394)
Q Consensus 148 ~IVF~~s~-----------------------------------------------------------~~~~~l~~~L~~~ 168 (394)
+|||.|.+ -.++.+.+.|.+.
T Consensus 371 vll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~ 450 (665)
T PRK14873 371 VLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRA 450 (665)
T ss_pred EEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHH
Confidence 99999887 2334445555443
Q ss_pred --CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------------CHHHHHHHHh
Q 016133 169 --GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESG 234 (394)
Q Consensus 169 --g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------s~~~y~Qr~G 234 (394)
+.++..+. ++.+++.|. ++.+|||+|..+..=+. +++..|+..|.-. ....+.|-+|
T Consensus 451 FP~~~V~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvag 521 (665)
T PRK14873 451 FPGVPVVTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAA 521 (665)
T ss_pred CCCCCEEEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHH
Confidence 22333222 234778886 59999999983222221 4678887666431 3455678999
Q ss_pred hcccCCCCceEEEEEecccHHHHHHHHH
Q 016133 235 RAGRDQLPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 235 RagR~g~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
|+||.+++|.+++...++. ..++.+.+
T Consensus 522 ragr~~~~G~V~iq~~p~~-~~~~~l~~ 548 (665)
T PRK14873 522 LVRPRADGGQVVVVAESSL-PTVQALIR 548 (665)
T ss_pred hhcCCCCCCEEEEEeCCCC-HHHHHHHh
Confidence 9999999999999875554 44444443
No 126
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.14 E-value=1.1e-09 Score=116.25 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=99.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCeEEEeccccccccCCCCccEEEEe
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMGIDRKDVRLVCHF 220 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~GiD~p~v~~VI~~ 220 (394)
.+.++|||..-+...+-|+++|..++++.--+.|++..+.|+..+..|.. ...-.|.||-|.|.|||+...+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 56799999999999999999999999999999999999999999999985 456699999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCceEEE--EEecc
Q 016133 221 NIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 252 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRagR~g~~g~~i~--l~~~~ 252 (394)
|--+++..=+|..-||.|-|+...+-+ |++.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999998876544 45544
No 127
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=1.4e-08 Score=107.65 Aligned_cols=166 Identities=23% Similarity=0.224 Sum_probs=122.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEE---EEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
.+-+||+|+..+.. .+....++. ++..+.++|.++... .+. ....++..+..-+.. ..++|+||-+.|++
T Consensus 565 kLsGMTGTA~tea~-Ef~~IY~L~---Vv~IPTnrP~~R~D~~D~vy~-t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe 639 (1112)
T PRK12901 565 KLAGMTGTAETEAG-EFWDIYKLD---VVVIPTNRPIARKDKEDLVYK-TKREKYNAVIEEITELSEAGRPVLVGTTSVE 639 (1112)
T ss_pred hhcccCCCCHHHHH-HHHHHhCCC---EEECCCCCCcceecCCCeEec-CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHH
Confidence 46688999865543 344444443 677788888765432 222 224566666555433 36789999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC--------CccEEEEecCCCCHHH
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEA 228 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p--------~v~~VI~~~~p~s~~~ 228 (394)
..+.++..|...|++.-.+++.....+-..+-++=+ .-.|-|||+++|||-|+. +==+||--..+.|..-
T Consensus 640 ~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRI 717 (1112)
T PRK12901 640 ISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRV 717 (1112)
T ss_pred HHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHH
Confidence 999999999999999877887755444433333222 335899999999999986 2237888899999999
Q ss_pred HHHHHhhcccCCCCceEEEEEecccH
Q 016133 229 FYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 229 y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
--|-.||+||.|.||.+..|++-+|-
T Consensus 718 D~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 718 DRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred HHHHhcccccCCCCCcceEEEEcccH
Confidence 99999999999999999999998764
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=5.6e-09 Score=110.25 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=121.6
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
++.+||+|+..+. ..+.+..++ .++..+.++|....... .......++..+..-+.. ..++|+||-|.|++.
T Consensus 505 kl~GmTGTa~~e~-~Ef~~iY~l---~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITES-REFKEIYNL---YVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHH-HHHHHHhCC---CEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 6789999986543 345555544 46777888776653321 112224555555444432 356799999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CeEEEeccccccccCCCC---c-----cEEEEecCCCCHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD---V-----RLVCHFNIPKSMEA 228 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~---v-----~~VI~~~~p~s~~~ 228 (394)
.+.++..|.+.|++...+++.-...+-..+-+ .|+ -.|.|||+++|||.|+.- | =+||.-..|.|..-
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Ri 657 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRI 657 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHH
Confidence 99999999999999888888744333333322 343 469999999999999752 2 27888999999999
Q ss_pred HHHHHhhcccCCCCceEEEEEecccH
Q 016133 229 FYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 229 y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
--|-.||+||.|.+|.+..|++-+|.
T Consensus 658 d~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 658 DRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HHHHhcccccCCCCCceeEEEEcchH
Confidence 99999999999999999999998774
No 129
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.08 E-value=6.3e-09 Score=108.21 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=82.3
Q ss_pred EEeCcHHHHHHHHHHH-HhCCCceEEecCCCCHHHHHHHHHHHhcCCC---eEEEeccccccccCCCCccEEEEecCCCC
Q 016133 150 VYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKS 225 (394)
Q Consensus 150 VF~~s~~~~~~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~---~iLVaT~~~~~GiD~p~v~~VI~~~~p~s 225 (394)
||+.......++.+.+ +-+|..+..+||.|+..+|+.+++.|.+... -.|.+|-|.|.||++-+.+.||.||++++
T Consensus 599 v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN 678 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN 678 (776)
T ss_pred EEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC
Confidence 3344445554444444 3358899999999999999999999996433 36678899999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCceEEEE
Q 016133 226 MEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 226 ~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
++.=.|.++||-|+|+.-.|++|
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999998888776
No 130
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.05 E-value=3e-09 Score=108.50 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=96.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--CeEEEeccccccccCCCCccEEEEec
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFN 221 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~~~GiD~p~v~~VI~~~ 221 (394)
.+.+++||..-....+-|...|...++...-+.|...-.+|+.++..|...+ .-.|.+|-|.|-|||+...++||.+|
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 3578999999999999999999999999999999999999999999998654 34788999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCCCCceE--EEEEecccH
Q 016133 222 IPKSMEAFYQESGRAGRDQLPSKS--LLYYGMDDR 254 (394)
Q Consensus 222 ~p~s~~~y~Qr~GRagR~g~~g~~--i~l~~~~d~ 254 (394)
+..++-.=.|.--||.|.|+...+ +-+++.+-.
T Consensus 856 ~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 856 IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999999999999999999976544 445555543
No 131
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.04 E-value=8.2e-09 Score=105.52 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=101.8
Q ss_pred HHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHH-hCCCceEEecCCCCHHHHHHHHHHHhcCCCe--EEEeccccc
Q 016133 132 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISSRKQ--VVVATVAFG 206 (394)
Q Consensus 132 ~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~--iLVaT~~~~ 206 (394)
+.+.+..+++. ..+.++|+|..|+....-+-..|. ..|+...-+.|..+...|..++++|.+++.- .|++|.+.|
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 34445555432 235589999999999999999999 6899999999999999999999999987643 678999999
Q ss_pred cccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEE
Q 016133 207 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 207 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
.|+|+...+-||.||+.+++..=.|..-||-|-|+...+++|
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999999999999999999999999999999999988777665
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=1.2e-08 Score=107.65 Aligned_cols=165 Identities=22% Similarity=0.229 Sum_probs=121.0
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEE---EEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
.+-+||+|+..+.. .+.+..++ .++..++++|.+.... .+. ....++..+.+-+.. ..++|+||-+.|++
T Consensus 386 kLsGMTGTa~te~~-Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~-t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe 460 (913)
T PRK13103 386 KLSGMTGTADTEAF-EFRQIYGL---DVVVIPPNKPLARKDFNDLVYL-TAEEKYAAIITDIKECMALGRPVLVGTATIE 460 (913)
T ss_pred hhccCCCCCHHHHH-HHHHHhCC---CEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHH
Confidence 57789999865443 34444444 3677788887664322 222 234566666555542 36789999999999
Q ss_pred HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEeccccccccCCC-----------------------
Q 016133 157 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK----------------------- 212 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p----------------------- 212 (394)
..+.++..|.+.|++...+++.....+-..+- ..| .-.|.|||+++|||.|+.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~ 537 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQI 537 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHH
Confidence 99999999999999887777765443332222 244 346999999999999984
Q ss_pred ---------Cc-----cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 213 ---------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 213 ---------~v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
.| =+||--..|.|..-=-|-.||+||.|.||.+..|++-+|.
T Consensus 538 ~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 538 KADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2788888999999899999999999999999999998764
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.95 E-value=3.8e-08 Score=104.85 Aligned_cols=91 Identities=24% Similarity=0.227 Sum_probs=70.7
Q ss_pred EEEEeCcHHHHHHHHHHHHhC----C--CceEEecCCCCHHHHHHHHHHH----------------------hc----CC
Q 016133 148 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 195 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 195 (394)
++|=.++++.+-.+|..|... + +....|||..+...|..+.+.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 577788898888888888654 2 3467899999888877766553 12 46
Q ss_pred CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCC
Q 016133 196 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 241 (394)
Q Consensus 196 ~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 241 (394)
..|+|+|++.+.|+|+ ++=..+.-|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~---dfd~~~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH---DYDWAIADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc---cCCeeeeccCcHHHHHHHhhccccccc
Confidence 7899999999999996 333445568899999999999999875
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.87 E-value=1.9e-07 Score=98.31 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=83.7
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHH--hCCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~--~~~~~~~IVF~~s~~~ 157 (394)
.+.+||+|+..+ ...+.+..++ .++..++++|....... .......+...+.+-+. ...++|+||-|.|++.
T Consensus 361 kL~GMTGTa~te-~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~ 436 (870)
T CHL00122 361 KLSGMTGTAKTE-ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEK 436 (870)
T ss_pred hhcccCCCCHHH-HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHH
Confidence 577899998653 3344444444 36778888887654431 11222345555544332 2467899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCC--HHHHHHHHHHHhcC-CCeEEEeccccccccCCC
Q 016133 158 CDELSAYLSAGGISCAAYHAGLN--DKARSSVLDDWISS-RKQVVVATVAFGMGIDRK 212 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~--~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p 212 (394)
.+.++..|.+.|++...+++.-. ..+- +++.. .| .-.|.|||+++|||.|+.
T Consensus 437 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA-~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 437 SELLSQLLKEYRLPHQLLNAKPENVRRES-EIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHcCCccceeeCCCccchhHH-HHHHh--cCCCCcEEEeccccCCCcCee
Confidence 99999999999999999998632 2332 23332 34 346999999999999863
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.87 E-value=9.7e-08 Score=103.70 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCEEEEeecCChh-HHHHHHHHhCCCCCEEE---ecCCC-CCCeEEEEEE-cC-----chhhH----HHHHHHHHHhCCC
Q 016133 81 VPILALTATAAPK-VQKDVMESLCLQNPLVL---KSSFN-RPNLFYEVRY-KD-----LLDDA----YADLCSVLKANGD 145 (394)
Q Consensus 81 ~~~l~lSAT~~~~-~~~~i~~~l~~~~~~~~---~~~~~-~~nl~~~v~~-~~-----~~~~~----~~~l~~~l~~~~~ 145 (394)
..++++|||++.. -...+.+.+|+.+.... ..+++ ..+....+.. .+ ..+.. ...+.+++... +
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-S 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-C
Confidence 4678999999743 23456778898754322 22333 2232222211 11 11122 23334444443 4
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCcc--EEEE
Q 016133 146 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCH 219 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~--~VI~ 219 (394)
+++|||++|.+..+.++..|.. .++.+ +..+.. ..|.+++++|++++..||++|+.|.+|||+|+.. .||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 5899999999999999999975 23333 333333 5788999999999999999999999999999876 5677
Q ss_pred ecCCCC------------------------------HHHHHHHHhhcccCCCCceEEEEEec
Q 016133 220 FNIPKS------------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 220 ~~~p~s------------------------------~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
.++|.. +..+.|.+||.=|.....-+++++++
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 777631 13346889999998765445555554
No 136
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.84 E-value=4.5e-07 Score=89.74 Aligned_cols=220 Identities=14% Similarity=0.193 Sum_probs=149.8
Q ss_pred CCCccEEEEecCCcccc--CCCCCHHHHH------------HHHHHHHhCC------CCCEEEEeecCChhHHHHHHHHh
Q 016133 43 RGLLNLVAIDEAHCISS--WGHDFRPSYR------------KLSSLRNYLP------DVPILALTATAAPKVQKDVMESL 102 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~--~g~~fr~~~~------------~l~~l~~~~~------~~~~l~lSAT~~~~~~~~i~~~l 102 (394)
++-+.++|||.||.++. |.| ....+. .+..++..+- =.|+|++|+..+|+....+.+..
T Consensus 159 LSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~ 237 (442)
T PF06862_consen 159 LSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC 237 (442)
T ss_pred hheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC
Confidence 44588999999998773 553 111110 1111221110 26899999999999877655532
Q ss_pred CCC-CCEEE-----------ecCCCCCCeEEEEEEcCc---hhhHHHH----HHHHHH-hCCCccEEEEeCcHHHHHHHH
Q 016133 103 CLQ-NPLVL-----------KSSFNRPNLFYEVRYKDL---LDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 103 ~~~-~~~~~-----------~~~~~~~nl~~~v~~~~~---~~~~~~~----l~~~l~-~~~~~~~IVF~~s~~~~~~l~ 162 (394)
... ..+.+ ......++++..+..... .+..++. +..-+. ....+.+|||++|--+--.|-
T Consensus 238 ~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlR 317 (442)
T PF06862_consen 238 QNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLR 317 (442)
T ss_pred cCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHH
Confidence 211 11111 122223344443332221 1222222 222333 445567999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc--ccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
.+|++.++....+|--.+..+-.++...|.+|+.+||+-|. -+=+=..+.+|+.||.|++|..+.-|-..++-.+...
T Consensus 318 N~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 318 NYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred HHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999997 3455667888999999999999988877765554443
Q ss_pred ------CCceEEEEEecccHHHHHHHHHh
Q 016133 241 ------LPSKSLLYYGMDDRRRMEFILSK 263 (394)
Q Consensus 241 ------~~g~~i~l~~~~d~~~~~~i~~~ 263 (394)
....|.++|+.-|.-+++.|+..
T Consensus 398 ~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 398 GGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred cccccccCceEEEEecHhHHHHHHHHhCH
Confidence 36789999999999888887643
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.83 E-value=4.8e-08 Score=95.26 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=95.4
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc-CCCeE-EEeccccccccCCCCccEEEEe
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHF 220 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~i-LVaT~~~~~GiD~p~v~~VI~~ 220 (394)
.++.+.+|||.-....+.+...+.++++...-+.|..++..|....+.|+. .++.| +++-.+.++|+++...+.|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 356789999999999999999999999999999999999999999999995 45554 4566789999999999999999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 221 NIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
.+++++.-++|.--|+.|-|+.+.+.+.|
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEE
Confidence 99999999999999999999877665554
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=2.4e-06 Score=90.13 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=84.6
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEE--EcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
.+-+||+|+..+. ..+.+..++ .++..+.++|.++.... .......++..+.+-+.. ..++|+||-+.|++.
T Consensus 376 kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH
Confidence 5778999986544 334444444 47778888887654322 112224566555554432 367899999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHH-HHHHHHHhcCC-CeEEEeccccccccCCC
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKAR-SSVLDDWISSR-KQVVVATVAFGMGIDRK 212 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R-~~~~~~f~~g~-~~iLVaT~~~~~GiD~p 212 (394)
.+.++..|.+.|++...+++.-...++ .+++.. .|+ -.|-|||+++|||-|+.
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999999999999999889986222222 223332 343 45899999999998864
No 139
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.72 E-value=9.6e-08 Score=99.97 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=110.6
Q ss_pred HHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC---CeEEEeccccc
Q 016133 132 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAFG 206 (394)
Q Consensus 132 ~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~---~~iLVaT~~~~ 206 (394)
+++.|..++.+ ..+++++.||.-..-..-+..+|.-.++.-.-+.|....++|...++.|..-. ...|.+|-+.|
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 44555555533 34678999999888888999999988899999999999999999999998643 34788999999
Q ss_pred cccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHh
Q 016133 207 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 263 (394)
Q Consensus 207 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~ 263 (394)
.|+|+...+.||.||.-+++-...|+--||.|-|+...+-++....-...-+.|++.
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 999999999999999999999999999999999998888888766555555556554
No 140
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.71 E-value=4.1e-08 Score=95.82 Aligned_cols=214 Identities=17% Similarity=0.189 Sum_probs=134.5
Q ss_pred ccEEEeCCceecChHHH-HH---HHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFM-SK---LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~-~~---l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
..|++.|-.+++..+.. .. ..+......++++++||+|.+...- || ++..+.+ ..--++||||+-.+
T Consensus 391 ~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FR----RVlsiv~---aHcKLGLTATLvRE 461 (776)
T KOG1123|consen 391 AGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FR----RVLSIVQ---AHCKLGLTATLVRE 461 (776)
T ss_pred CcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HH----HHHHHHH---HHhhccceeEEeec
Confidence 56888888888754422 21 2334445569999999999887532 44 3333333 23468999997654
Q ss_pred HHH--HH----------HHHhCCCCC-EE-----Eec--C-------------CCCCCeEEEEEEcCchhhHHHHHHHHH
Q 016133 94 VQK--DV----------MESLCLQNP-LV-----LKS--S-------------FNRPNLFYEVRYKDLLDDAYADLCSVL 140 (394)
Q Consensus 94 ~~~--~i----------~~~l~~~~~-~~-----~~~--~-------------~~~~nl~~~v~~~~~~~~~~~~l~~~l 140 (394)
... |+ .+|+.+... .+ ... + ..+..+-|.+. +.++..-.-++
T Consensus 462 DdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN-----P~KFraCqfLI 536 (776)
T KOG1123|consen 462 DDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN-----PNKFRACQFLI 536 (776)
T ss_pred cccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC-----cchhHHHHHHH
Confidence 322 00 111111110 00 000 0 00111122221 23343333333
Q ss_pred H--hCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh-cCCCeEEEeccccccccCCCCccEE
Q 016133 141 K--ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRKQVVVATVAFGMGIDRKDVRLV 217 (394)
Q Consensus 141 ~--~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~iLVaT~~~~~GiD~p~v~~V 217 (394)
+ +..+.++|||..+.-...+.|-.|.+ -+++|..++.+|.++++.|+ +..++.++-+.+....||+|..+++
T Consensus 537 ~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvL 611 (776)
T KOG1123|consen 537 KFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVL 611 (776)
T ss_pred HHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEE
Confidence 2 23567999999998877777777644 57899999999999999999 5678899999999999999999999
Q ss_pred EEecCC-CCHHHHHHHHhhcccCCC---CceEEEEEe
Q 016133 218 CHFNIP-KSMEAFYQESGRAGRDQL---PSKSLLYYG 250 (394)
Q Consensus 218 I~~~~p-~s~~~y~Qr~GRagR~g~---~g~~i~l~~ 250 (394)
|+...- .|-..=.||.||.-|+.+ ++.-..||+
T Consensus 612 IQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 612 IQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred EEEcccccchHHHHHHHHHHHHHhhcCccccceeeee
Confidence 976644 367778899999887643 344445544
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.57 E-value=3.1e-06 Score=92.71 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=115.0
Q ss_pred CCCEEEEeecCChhH-HHHHHHHhCCCCC----EEEecCCCCC-CeEEEEEE-cCc-----hhhHHHH----HHHHHHhC
Q 016133 80 DVPILALTATAAPKV-QKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KDL-----LDDAYAD----LCSVLKAN 143 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~-~~~i~~~l~~~~~----~~~~~~~~~~-nl~~~v~~-~~~-----~~~~~~~----l~~~l~~~ 143 (394)
..++|++|||++..- ...+.+.+|+.+. ..+..+++.. +....+.. .+. .+..... |..++..
T Consensus 672 ~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~- 750 (928)
T PRK08074 672 KKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA- 750 (928)
T ss_pred CCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-
Confidence 467899999998532 3345678888642 2333444432 22222211 111 1222233 3344333
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCc--cEEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--RLVCH 219 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v--~~VI~ 219 (394)
.+++++|+++|.+..+.+++.|..... ....+.-+++...|.+++++|++++-.||++|..|..|||+|+- +.||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 345899999999999999999976422 12222224444567889999999988999999999999999974 78888
Q ss_pred ecCCCC------------------------------HHHHHHHHhhcccCCCCceEEEEEecc--cHHHHHHHHHhc
Q 016133 220 FNIPKS------------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKN 264 (394)
Q Consensus 220 ~~~p~s------------------------------~~~y~Qr~GRagR~g~~g~~i~l~~~~--d~~~~~~i~~~~ 264 (394)
..+|-. +..+.|-+||.=|....--+++++++. ....-+.+++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 887631 223468889999987554455555543 222334455544
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.53 E-value=2.7e-06 Score=90.28 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=105.2
Q ss_pred CCCEEEEeecCChh-HHHHHHHHhCCCC---CEE--EecCCCCCCe-EEEEEE---cC-chh----hHHHHHHHHHHhCC
Q 016133 80 DVPILALTATAAPK-VQKDVMESLCLQN---PLV--LKSSFNRPNL-FYEVRY---KD-LLD----DAYADLCSVLKANG 144 (394)
Q Consensus 80 ~~~~l~lSAT~~~~-~~~~i~~~l~~~~---~~~--~~~~~~~~nl-~~~v~~---~~-~~~----~~~~~l~~~l~~~~ 144 (394)
...+|++|||+++. ....+.+.+|+.+ ... +..+++..+. .+.+.. .+ ..+ ...+.+..++. .+
T Consensus 456 ~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~ 534 (697)
T PRK11747 456 APGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KH 534 (697)
T ss_pred CCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cC
Confidence 45789999999863 3455677889864 222 2334433222 111111 11 111 22334445555 44
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHh----cCCCeEEEeccccccccCCCC--ccEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRKD--VRLV 217 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~iLVaT~~~~~GiD~p~--v~~V 217 (394)
+ .++||++|.+..+.++..|... +.. ...++. ..|..+++.|+ .|+..||++|..|..|||+|+ +++|
T Consensus 535 g-g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 535 K-GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred C-CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 4 4899999999999999999753 333 344554 24667787776 467889999999999999987 7889
Q ss_pred EEecCCC----CH--------------------------HHHHHHHhhcccCCCCceEEEEEec
Q 016133 218 CHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 218 I~~~~p~----s~--------------------------~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
|...+|. ++ ..+.|-+||.=|....--+++++++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 9888773 11 1235788999887654334444444
No 143
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.53 E-value=7.3e-06 Score=88.44 Aligned_cols=166 Identities=13% Similarity=0.044 Sum_probs=103.4
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEE--cC-----chhhHH----HHHHHHHHhCCCccEE
Q 016133 81 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KD-----LLDDAY----ADLCSVLKANGDTCAI 149 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~--~~-----~~~~~~----~~l~~~l~~~~~~~~I 149 (394)
..+|++|||++-.-..++.+.+|+........++...+-...+.. .+ ..+... +.+..++ ..+++++
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~L 651 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPIL 651 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCEE
Confidence 467899999962111136788888654433333222211111111 11 111222 2333333 3456899
Q ss_pred EEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC--CccEEEEecCCC---
Q 016133 150 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK--- 224 (394)
Q Consensus 150 VF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p--~v~~VI~~~~p~--- 224 (394)
|+++|.+..+.+++.|....+.+ ...|... .+.+++++|++++..||++|..|.+|||+| +...||...+|-
T Consensus 652 VLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 652 VLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred EEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCC
Confidence 99999999999999997665444 4444222 256689999999889999999999999997 355667777662
Q ss_pred -C--------------------------HHHHHHHHhhcccCCCCceEEEEEec
Q 016133 225 -S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 225 -s--------------------------~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
+ +..+.|-+||.=|....--+++++++
T Consensus 729 ~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 729 EDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 1 23457889999998754334555544
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.46 E-value=2.2e-06 Score=91.88 Aligned_cols=222 Identities=18% Similarity=0.205 Sum_probs=141.2
Q ss_pred ecChHHHHHHHhhccCCCccEEEEecCCcccc-CCCCCHHH--HHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPS--YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~--~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
+.||..+..++ .-..+++.|.||.|.+.. .|..+.-. .+.+.. +.-.+++++++|..+++.- ..+|.
T Consensus 1239 i~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~--q~~k~ir~v~ls~~lana~-----d~ig~ 1308 (1674)
T KOG0951|consen 1239 ISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS--QLEKKIRVVALSSSLANAR-----DLIGA 1308 (1674)
T ss_pred EechhHHHHHh---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH--HHHhheeEEEeehhhccch-----hhccc
Confidence 33444444443 223589999999999874 23211111 122221 1223789999998876542 22777
Q ss_pred CCCEEEecCCCCCCeE--EEEEEcCc--h--------hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC----
Q 016133 105 QNPLVLKSSFNRPNLF--YEVRYKDL--L--------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---- 168 (394)
Q Consensus 105 ~~~~~~~~~~~~~nl~--~~v~~~~~--~--------~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~---- 168 (394)
....++..++++.... ..+...+. . ...+..+.+... .+.++|||+++++.|..++..|-..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAG--NRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhc--CCCCeEEEeccchhhhhhhhccchhhccC
Confidence 7777777665543322 22222111 1 112233333222 4568999999999998887554321
Q ss_pred ------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEe-----c----
Q 016133 169 ------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF-----N---- 221 (394)
Q Consensus 169 ------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~-----~---- 221 (394)
..+...=|-+++..+...+..-|..|.++|+|...- .+|+-... ..||-+ |
T Consensus 1387 ~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~ 1464 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEH 1464 (1674)
T ss_pred cHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeeccccc
Confidence 011112288999999999999999999999998877 88876543 344422 2
Q ss_pred --CCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhccc
Q 016133 222 --IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 222 --~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
.+.++...+|++|+|.| .|.|+++....+...+++++.+..+
T Consensus 1465 ~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1465 SYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 46689999999999998 5789999999998888888765543
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.35 E-value=8.9e-06 Score=86.27 Aligned_cols=165 Identities=21% Similarity=0.199 Sum_probs=106.2
Q ss_pred CCCEEEEeecCChhHHH-HHHHHhCCCCCE-EE--ecCCCCCCe-EEEEEE--cC-----chhhHHHHHHHHHHhCCCcc
Q 016133 80 DVPILALTATAAPKVQK-DVMESLCLQNPL-VL--KSSFNRPNL-FYEVRY--KD-----LLDDAYADLCSVLKANGDTC 147 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~-~i~~~l~~~~~~-~~--~~~~~~~nl-~~~v~~--~~-----~~~~~~~~l~~~l~~~~~~~ 147 (394)
...++++|||+++...- .+...+++.... .+ ..+++.... ...+.. .. ........+..+++..++ .
T Consensus 403 ~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 481 (654)
T COG1199 403 VASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-G 481 (654)
T ss_pred cCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-C
Confidence 46799999998876433 355555555443 11 122222211 111111 11 112233445555555554 7
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCC-eEEEeccccccccCCCCc--cEEEEecCC
Q 016133 148 AIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDV--RLVCHFNIP 223 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~GiD~p~v--~~VI~~~~p 223 (394)
++||++|.+..+.+++.|...... ....+|..+. ...++.|..+.- .++|+|..|+.|||+|+= +.||..++|
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lP 558 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLP 558 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecC
Confidence 999999999999999999887652 4455665544 478888886554 899999999999999975 778888887
Q ss_pred C------------------------------CHHHHHHHHhhcccCCCC-ceEEEE
Q 016133 224 K------------------------------SMEAFYQESGRAGRDQLP-SKSLLY 248 (394)
Q Consensus 224 ~------------------------------s~~~y~Qr~GRagR~g~~-g~~i~l 248 (394)
. .+..+.|.+||+=|.-.. |..+++
T Consensus 559 fp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 559 FPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 3 234568999999996544 444444
No 146
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.30 E-value=3.1e-06 Score=73.80 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc--ccccccCCC
Q 016133 137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 212 (394)
Q Consensus 137 ~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiD~p 212 (394)
.++++..+ +.++||++|.+..+.+.+.+...+. ....+.. +...+..+++.|++++-.||+++. .+..|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34555554 6799999999999999999987632 1122332 355678899999999999999999 999999999
Q ss_pred C--ccEEEEecCCCC----H--------------------------HHHHHHHhhcccCCCCceEEEEEec
Q 016133 213 D--VRLVCHFNIPKS----M--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 213 ~--v~~VI~~~~p~s----~--------------------------~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
+ ++.||..++|.. + ....|-+||+-|..+.--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7 778999998841 1 1235889999998765445555543
No 147
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.29 E-value=9.4e-05 Score=79.14 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=52.5
Q ss_pred cEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHH-HHHhCCCCCEEEEeecCChh----
Q 016133 19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPK---- 93 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~-l~~~~~~~~~l~lSAT~~~~---- 93 (394)
.|+++||.++.. +.|........+..|||||||.+.... . |.-+.. +++..+..-+.+|||.+..-
T Consensus 9 gi~~~T~rIl~~----DlL~~ri~~~~itgiiv~~Ahr~~~~~---~--eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 9 GIFSITSRILVV----DLLTGIIPPELITGILVLRADRIIESS---Q--EAFILRLYRQKNKTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred CEEEEechhhHh----HHhcCCCCHHHccEEEEeecccccccc---c--HHHHHHHHHHhCCCcceEEecCCCcccccch
Confidence 488888887743 345667777789999999999987422 1 222322 45555566689999997753
Q ss_pred -HHHHHHHHhCCC
Q 016133 94 -VQKDVMESLCLQ 105 (394)
Q Consensus 94 -~~~~i~~~l~~~ 105 (394)
-...+++.|++.
T Consensus 80 ~~l~~vmk~L~i~ 92 (814)
T TIGR00596 80 SPLETKMRNLFLR 92 (814)
T ss_pred HHHHHHHHHhCcC
Confidence 345566666653
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=2.8e-05 Score=83.05 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecC--CCCCCeEEEEEEc------------Cc-hhhHHHH----HHHHH
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYK------------DL-LDDAYAD----LCSVL 140 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~~nl~~~v~~~------------~~-~~~~~~~----l~~~l 140 (394)
-..+|++|||++|.. .+...||+..+.....+ +...|+...+... .. .+..... |.+++
T Consensus 441 ~~svil~SgTL~p~~--~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~ 518 (705)
T TIGR00604 441 VRSVILASGTLSPLD--AFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFS 518 (705)
T ss_pred cCEEEEecccCCcHH--HHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHh
Confidence 356899999999854 44677887654433221 1222322222111 11 1222333 33344
Q ss_pred HhCCCccEEEEeCcHHHHHHHHHHHHhCCCc------eEEecCCCCHHHHHHHHHHHhc----CCCeEEEec--cccccc
Q 016133 141 KANGDTCAIVYCLERTTCDELSAYLSAGGIS------CAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT--VAFGMG 208 (394)
Q Consensus 141 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~------~~~~h~~l~~~~R~~~~~~f~~----g~~~iLVaT--~~~~~G 208 (394)
+..+ +.+|||++|-...+.+++.+.+.|+. -..+.-+-...++..+++.|+. |+-.||+|+ ..+++|
T Consensus 519 ~~~p-gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 519 KIIP-DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred hcCC-CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 4444 56999999999999999988765421 1122212222577889999964 456799999 889999
Q ss_pred cCCCC--ccEEEEecCCC-CH------------------------------HHHHHHHhhcccCCCCceEEEEEe
Q 016133 209 IDRKD--VRLVCHFNIPK-SM------------------------------EAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 209 iD~p~--v~~VI~~~~p~-s~------------------------------~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
||+++ .+.||..++|. ++ ....|-+||+=|....--++++++
T Consensus 598 IDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 99998 68899999985 11 122478889988765544555554
No 149
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.18 E-value=1.8e-06 Score=74.73 Aligned_cols=70 Identities=27% Similarity=0.357 Sum_probs=50.2
Q ss_pred ccEEEeCCceecChHHHHHHHh-hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~-~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
.+++++||+.+. ..+.. ......+++|||||+|.+..|+ |+..+..+.......++.+++++|||+++.+
T Consensus 96 ~~ilv~T~~~l~-----~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 96 ADILVTTPEQLL-----DLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLKRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp SSEEEEEHHHHH-----HHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSHTTTTSEEEEEESSSTHHH
T ss_pred ccccccCcchhh-----ccccccccccccceeeccCccccccccc--HHHHHHHHHHHhcCCCCCcEEEEeeCCChhH
Confidence 578888887642 22222 1133459999999999999885 7777777766655556799999999999544
No 150
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.14 E-value=2.3e-05 Score=85.58 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=102.5
Q ss_pred hHHHHHHHHH-H--hCCCc--cEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC--CCeEEEecc
Q 016133 131 DAYADLCSVL-K--ANGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATV 203 (394)
Q Consensus 131 ~~~~~l~~~l-~--~~~~~--~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~ 203 (394)
.+...+..++ . ...+. +++||++-....+-+...|...++....++|+++...|...++.|.++ ..-.+++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 3555565555 2 22344 899999999999999999999998899999999999999999999986 455778888
Q ss_pred ccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 204 ~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
+.|.|+|....++||+||..+++....|...|+.|-|+...+.++-
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999999999999999999999999877665553
No 151
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.10 E-value=8e-06 Score=73.21 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=48.3
Q ss_pred ccEEEeCCceecChHHHHHH-HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~ 95 (394)
.+++++||+.+. ..+ ........++++|+||+|.+.+.+ |...+..+ ...++ +.+++++|||+++.+.
T Consensus 120 ~~iiv~T~~~l~-----~~l~~~~~~~~~l~~lIvDE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~ 189 (203)
T cd00268 120 PHIVVATPGRLL-----DLLERGKLDLSKVKYLVLDEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVR 189 (203)
T ss_pred CCEEEEChHHHH-----HHHHcCCCChhhCCEEEEeChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHH
Confidence 456666665331 112 222344668999999999988655 55555544 33333 7999999999998876
Q ss_pred HHHHHHh
Q 016133 96 KDVMESL 102 (394)
Q Consensus 96 ~~i~~~l 102 (394)
..+...+
T Consensus 190 ~~~~~~~ 196 (203)
T cd00268 190 DLARKFL 196 (203)
T ss_pred HHHHHHC
Confidence 6554443
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.09 E-value=0.00017 Score=75.22 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=94.9
Q ss_pred CCEEEEeecCChhH------HHHHHHHhCCCCCE-EEecCCC----CCC--eEEEEEE-----cCch-------------
Q 016133 81 VPILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY-----KDLL------------- 129 (394)
Q Consensus 81 ~~~l~lSAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----~~n--l~~~v~~-----~~~~------------- 129 (394)
.++|+.|||++-.- ...+.+.+|+.... .+..+++ +.. +-|.... .+..
T Consensus 372 ~~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~ 451 (636)
T TIGR03117 372 HGAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAE 451 (636)
T ss_pred CeEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcch
Confidence 37899999988644 56778899986442 2345566 333 2332211 1111
Q ss_pred ----hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc----CCCeEEEe
Q 016133 130 ----DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVA 201 (394)
Q Consensus 130 ----~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~iLVa 201 (394)
......+..++.... +.++|.+.|....+.+++.|...--....+.|..+ .+...+++|+. |+..||++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~g 528 (636)
T TIGR03117 452 RTWLENVSLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIA 528 (636)
T ss_pred hhHHHHHHHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEe
Confidence 113455566666554 47999999999999999999764223355666543 34567888886 47899999
Q ss_pred ccccccccCC----------CCccEEEEecCC
Q 016133 202 TVAFGMGIDR----------KDVRLVCHFNIP 223 (394)
Q Consensus 202 T~~~~~GiD~----------p~v~~VI~~~~p 223 (394)
|+.|..|||+ ..++.||...+|
T Consensus 529 t~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 529 AGGAWTGIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred CCccccccccCCccCCCCCCCcccEEEEEeCC
Confidence 9999999999 348889988877
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.08 E-value=3.2e-05 Score=82.99 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=88.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCC-ce--EEecCCCCHHHHHHHHHHHhcC-CCeEE-EeccccccccCCCCccEEEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGI-SC--AAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCH 219 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~-~~--~~~h~~l~~~~R~~~~~~f~~g-~~~iL-VaT~~~~~GiD~p~v~~VI~ 219 (394)
+.+++|||.-+...+-+.+-|.+.-. ++ ..+.|..++.+|.++.++|.++ .++|| .+|.+.|.|+|+.+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 45899999999999999998876533 33 3688999999999999999998 67766 56789999999999999999
Q ss_pred ecCCCCHHHHHHHHhhcccCCCCceE
Q 016133 220 FNIPKSMEAFYQESGRAGRDQLPSKS 245 (394)
Q Consensus 220 ~~~p~s~~~y~Qr~GRagR~g~~g~~ 245 (394)
++-.+++..=+|.+-||.|-|+.-.+
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceee
Confidence 99999999999999999999976554
No 154
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.06 E-value=5.3e-05 Score=80.95 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--CeEEEeccccccccC
Q 016133 133 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGID 210 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~~~GiD 210 (394)
+..|++-|+. .+.++|||+.-.+..+-|..+|+-+|+-..-+.|...-++|+..+++|.... ...|.+|-..|.|||
T Consensus 1265 LAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiN 1343 (1958)
T KOG0391|consen 1265 LAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGIN 1343 (1958)
T ss_pred HHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccc
Confidence 3444444444 4678999999999999999999999999999999999999999999999653 457889999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 211 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 211 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
+-+.+.||.||-.+++..=.|.--|+.|-|+--.+.+|---.+...-+.|+++.
T Consensus 1344 LtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1344 LTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred cccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999887777777777777665555554333433344455544
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.00 E-value=2.3e-05 Score=79.81 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=101.3
Q ss_pred HHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC-eEEEeccccccc
Q 016133 132 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMG 208 (394)
Q Consensus 132 ~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~G 208 (394)
++..|..+|.+ ..+.++++|+.-.+..+-+.++|.-+|+.-.-+.|.....+|..++.+|+..++ -.|.+|-+.|.|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 34445555543 357799999999999999999999999999999999999999999999997654 467899999999
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEE
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
||+...+.||.||-.+++..=.|...||.|-|+.-.+.++
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeee
Confidence 9999999999999999999999999999999977654443
No 156
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00012 Score=77.20 Aligned_cols=165 Identities=21% Similarity=0.205 Sum_probs=105.8
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEE--cCchhhHHHHHHHHHHh--CCCccEEEEeCcHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 158 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~ 158 (394)
+.+||+|+..+..+ +.. +-+-.++..+.++|.++..... ......++..+...+.. ..++|+||-+.+++..
T Consensus 367 l~gmTGTa~te~~E-F~~---iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~S 442 (822)
T COG0653 367 LAGMTGTADTEEEE-FDV---IYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKS 442 (822)
T ss_pred hcCCCCcchhhhhh-hhh---ccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecc
Confidence 45667776555432 222 2233456667777766432211 11224555555554432 4678999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CeEEEeccccccccCCCCcc-----------EEEEecCCCCH
Q 016133 159 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSM 226 (394)
Q Consensus 159 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~v~-----------~VI~~~~p~s~ 226 (394)
+.+.+.|.+.|++-..+.+.-...+-..+-+ .|+ -.|-|||+++|+|-|+.--. +||--.--.|-
T Consensus 443 E~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESR 519 (822)
T COG0653 443 ELLSKLLRKAGIPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESR 519 (822)
T ss_pred hhHHHHHHhcCCCceeeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhh
Confidence 9999999999999878888765444333322 333 34779999999999975332 23322222333
Q ss_pred HHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 227 EAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 227 ~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
.-=-|--||+||.|.+|.+..|++-+|.
T Consensus 520 RIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 520 RIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred HHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 3334889999999999999988876653
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.90 E-value=0.00028 Score=74.15 Aligned_cols=197 Identities=13% Similarity=0.225 Sum_probs=118.0
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHH----HHhCC-CCCEEEEeecCChhHHHHHHHHhCCCCCE-EEecC----
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSL----RNYLP-DVPILALTATAAPKVQKDVMESLCLQNPL-VLKSS---- 113 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l----~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~---- 113 (394)
++.++|||||+--++. |=|.+.++++... ..... ...+|++-||+.....+.+.. +.-...+ ++...
T Consensus 141 ~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~-~Rp~~~i~vI~n~y~~~ 217 (824)
T PF02399_consen 141 DRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLAS-CRPDENIHVIVNTYASP 217 (824)
T ss_pred cccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHH-hCCCCcEEEEEeeeecC
Confidence 3479999999986653 2133333332222 12222 456899999999998876555 4333332 32222
Q ss_pred -CCCCCeEEEE-----------E-----------------------EcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHH
Q 016133 114 -FNRPNLFYEV-----------R-----------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 158 (394)
Q Consensus 114 -~~~~nl~~~v-----------~-----------------------~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~ 158 (394)
+....-.+.- . .......-+..|..-|. .+.++-||+.|...+
T Consensus 218 ~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~ 295 (824)
T PF02399_consen 218 GFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFA 295 (824)
T ss_pred CcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHH
Confidence 1111000000 0 00001122233333333 345677999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccE--EEEecCC----CCHHHHHHH
Q 016133 159 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL--VCHFNIP----KSMEAFYQE 232 (394)
Q Consensus 159 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~--VI~~~~p----~s~~~y~Qr 232 (394)
+.+++.....+.++..++|.-+..+ + +.| ++.+|++-|++++.|+++....+ |.-|=-| .++.+.+|.
T Consensus 296 ~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~ 369 (824)
T PF02399_consen 296 EIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQM 369 (824)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHH
Confidence 9999999988889999988766652 2 233 56899999999999999876644 2222112 356789999
Q ss_pred HhhcccCCCCceEEEEEecc
Q 016133 233 SGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 233 ~GRagR~g~~g~~i~l~~~~ 252 (394)
+||+-.-. ....+++++..
T Consensus 370 lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 370 LGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred HHHHHhhc-cCeEEEEEecc
Confidence 99995544 55666666543
No 158
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.45 E-value=0.00038 Score=60.98 Aligned_cols=83 Identities=25% Similarity=0.338 Sum_probs=49.9
Q ss_pred ccEEEeCCceecChHHHHHHHh-hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~-~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~ 95 (394)
.++++.||+.+... +.. ......++++|+||+|.+..+. +...+..+ ... .++.+++++|||+++...
T Consensus 106 ~~v~~~t~~~l~~~-----~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~---~~~~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 106 TDILVTTPGRLLDL-----LENDLLELSNVDLVILDEAHRLLDGG--FGDQLEKL---LKLLPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred CCEEEeChHHHHHH-----HHcCCcCHhHCCEEEEECHHHHhcCC--cHHHHHHH---HHhCCccceEEEEecCCchhHH
Confidence 36776666643221 111 1234558899999999998642 44444444 333 358899999999987776
Q ss_pred HHHHHHhCCCCCEEEec
Q 016133 96 KDVMESLCLQNPLVLKS 112 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~ 112 (394)
......+. ....+..
T Consensus 176 ~~~~~~~~--~~~~~~~ 190 (201)
T smart00487 176 NLLELFLN--DPVFIDV 190 (201)
T ss_pred HHHHHhcC--CCEEEeC
Confidence 64444332 4444433
No 159
>COG4889 Predicted helicase [General function prediction only]
Probab=97.40 E-value=0.00011 Score=76.69 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=81.6
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh-------------CC--CceEEecCCCCHHHHHHHHH---HHhcCCCeEEEecccccc
Q 016133 146 TCAIVYCLERTTCDELSAYLSA-------------GG--ISCAAYHAGLNDKARSSVLD---DWISSRKQVVVATVAFGM 207 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~-------------~g--~~~~~~h~~l~~~~R~~~~~---~f~~g~~~iLVaT~~~~~ 207 (394)
+++|-||.++++...+++.+.. .+ +.+....|.|+..+|...++ .|...+.+||-.--.++.
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3679999999998888877653 12 34566778899999854433 234567889988889999
Q ss_pred ccCCCCccEEEEecCCCCHHHHHHHHhhcccCC---CCceEEEEE
Q 016133 208 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ---LPSKSLLYY 249 (394)
Q Consensus 208 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g---~~g~~i~l~ 249 (394)
|||+|..+.||.+++-.|+.+.+|.+||..|.. +-|..++-+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999999999999999999999999964 235555543
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.32 E-value=0.0016 Score=64.36 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=95.4
Q ss_pred HhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-Ce-EEEeccccccccCCCCccEEE
Q 016133 141 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVC 218 (394)
Q Consensus 141 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-iLVaT~~~~~GiD~p~v~~VI 218 (394)
+....-+.|||..-....+-+.-.|.+.|+.+..+-|+|++..|...++.|++.- +. .||+-.+.|..+|+...++|.
T Consensus 634 ~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 634 ERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred HcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeE
Confidence 3344457899999999999999999999999999999999999999999999763 33 567888999999999999999
Q ss_pred EecCCCCHHHHHHHHhhcccCCC--CceEEEEEec
Q 016133 219 HFNIPKSMEAFYQESGRAGRDQL--PSKSLLYYGM 251 (394)
Q Consensus 219 ~~~~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~ 251 (394)
++|+-++++.=+|...|..|-|+ |-.++.|+-.
T Consensus 714 mmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 714 MMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred eecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999999999999999885 4455555543
No 161
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0014 Score=65.20 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=94.9
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc--cccccCCCCccEEEEecCCC
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIPK 224 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~~~GiD~p~v~~VI~~~~p~ 224 (394)
-++||.++--.--.+-.++++.++....+|--.+...-.+.-+-|..|...+|+-|.- +-+-.++.+|+.||.|.+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 4799999999999999999999888777777666777777888899999999999973 56778899999999999999
Q ss_pred CHHHH---HHHHhhcccCC----CCceEEEEEecccHHHHHHHHH
Q 016133 225 SMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 225 s~~~y---~Qr~GRagR~g----~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
.+.-| +.+.+|+.-.| ....|.++|+.-|.-.+..+..
T Consensus 634 ~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 634 NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 87654 56777764333 4567999999988888877654
No 162
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.32 E-value=0.0029 Score=53.48 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCC------ceEEecCCCCHHHHHHHHHHHhcCC-CeEEEeccccccccCCCC--ccEEEEecCCC
Q 016133 158 CDELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK 224 (394)
Q Consensus 158 ~~~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~--v~~VI~~~~p~ 224 (394)
.+.++..+...+. .-..+.-+.+..+...+++.|++.. ..||++|..+..|||+|+ .+.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3445555554433 2234444455556788999998654 379999988999999997 46899888873
No 163
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.23 E-value=0.0029 Score=53.56 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCC---ceEEecCCCCHHHHHHHHHHHhcCCC---eEEEeccc--cccccCCCC--ccEEEEecCCCC--
Q 016133 158 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPKS-- 225 (394)
Q Consensus 158 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~iLVaT~~--~~~GiD~p~--v~~VI~~~~p~s-- 225 (394)
.+.+++.+++.+. ....+.-+....+...+++.|++..- .||+++.- ++.|||+|+ .+.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666665443 12233323333345678888987543 69999887 999999998 578999898831
Q ss_pred --H---------------------------HHHHHHHhhcccCCCCceEEEEEe
Q 016133 226 --M---------------------------EAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 226 --~---------------------------~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
+ ....|-+||+=|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 123578888888765544555544
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.13 E-value=0.0012 Score=69.49 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=85.4
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 217 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~V 217 (394)
.+.++||-+-=...-.|..+|... .+.....|+.+...+..++.+....|..++|+.|.....-+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 457889988888888888777643 3467889999999998999998889999999999999999999998888
Q ss_pred EEecCC------------------CCHHHHHHHHhhcccCCCCceEEEEEec
Q 016133 218 CHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 218 I~~~~p------------------~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
|..+.. .|.....|+.||+||. ++|.|..+.+.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 865532 2556779999999986 47777777654
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.07 E-value=0.0025 Score=67.43 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=93.7
Q ss_pred HHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhC----------------------CCceEEecCCCCHHHHHHHHHH
Q 016133 135 DLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDD 190 (394)
Q Consensus 135 ~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~ 190 (394)
.|.++|+. .-+.+.|||..|....+-|-.+|... |.....+.|......|....+.
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 34455542 23568999999999988888888631 3345778899999999999999
Q ss_pred HhcCC----CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEE
Q 016133 191 WISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 191 f~~g~----~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
|.+-. --.||+|-|.+.|||+-..+.||.||..+++.-=.|-+=|+-|.|+..-|++|
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 98532 23899999999999999999999999999999999999999999987777665
No 166
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.89 E-value=0.0015 Score=53.55 Aligned_cols=64 Identities=30% Similarity=0.305 Sum_probs=37.7
Q ss_pred ccEEEeCCceecChHHHHHHHh-hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 18 LRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~-~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
..+++.|++.+. ..+.. ......++++||||+|.+.... +.... ........++.+++++|||+
T Consensus 80 ~~i~i~t~~~~~-----~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLL-----DELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHH-----HHHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 567766666442 11111 1123468899999999987532 22211 11233345688999999996
No 167
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.76 E-value=0.014 Score=60.24 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh--cCCCeE-EEeccccccccCCCCccEEEEe
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQV-VVATVAFGMGIDRKDVRLVCHF 220 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~i-LVaT~~~~~GiD~p~v~~VI~~ 220 (394)
...+++|...-.....-+...|++.|+....+||....++|..+++.|. +|..+| |++-.+.|.|+|+-..+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 4557888777777778888899999999999999999999999999997 354554 5667889999999999999999
Q ss_pred cCCCCHHHHHHHHhhcccCCCCceEEEE
Q 016133 221 NIPKSMEAFYQESGRAGRDQLPSKSLLY 248 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l 248 (394)
|+-+++.-=-|..-|.-|.|+...+++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999988776654
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.30 E-value=0.0038 Score=52.44 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 37 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 37 l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
+.+-....+.++||+||||....+.--+|.. +..+ .......+|++|||+|...
T Consensus 87 ~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~---l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 87 LLNPCRLKNYDVIIMDECHFTDPTSIAARGY---LREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHTSSCTTS-SEEEECTTT--SHHHHHHHHH---HHHH-HHTTS-EEEEEESS-TT--
T ss_pred hcCcccccCccEEEEeccccCCHHHHhhhee---HHHh-hhccCeeEEEEeCCCCCCC
Confidence 4444556779999999999765433112221 1112 2234578999999998764
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.29 E-value=0.082 Score=58.44 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred hcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC
Q 016133 192 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239 (394)
Q Consensus 192 ~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 239 (394)
....+++||-++++-.|+|-|... .+-+|-|.---..+|.+-|+.|.
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred cCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 356889999999999999999765 55677777778899999999995
No 170
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.28 E-value=0.017 Score=54.09 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCeEEEeccccccccCCCC--------ccEEEEecCCCCHHHHHHHHhhcccCCCCce
Q 016133 186 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 244 (394)
Q Consensus 186 ~~~~~f~~g~~~iLVaT~~~~~GiD~p~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 244 (394)
...+.|++|+..|+|-|.+.+.||-+.. -++-|...+|+|....+|..||+.|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4567899999999999999999997653 3456778899999999999999999997543
No 171
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.17 E-value=0.036 Score=59.06 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=65.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 221 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 221 (394)
+.++||.+++++-+.++++.|++. |..+..+||+++..+|.+...++.+|+.+|+|+|...- -+.++++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 557999999999999999999874 78899999999999999999999999999999997432 25677888888555
No 172
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.03 Score=60.24 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC-----CceEE-ecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g-----~~~~~-~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
...+-.+..+.-...++++++-++|..-+.++++.|.+.+ ..+.. |||.|+.+++.+++++|.+|..+|||+|+
T Consensus 110 KTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 110 KTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 3445555555555556789999999999999999987652 44333 99999999999999999999999999998
Q ss_pred ccc
Q 016133 204 AFG 206 (394)
Q Consensus 204 ~~~ 206 (394)
.|-
T Consensus 190 ~FL 192 (1187)
T COG1110 190 QFL 192 (1187)
T ss_pred HHH
Confidence 763
No 173
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.12 E-value=0.0063 Score=52.90 Aligned_cols=39 Identities=44% Similarity=0.497 Sum_probs=26.8
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
...++||+||||..... ..+..+ .. .++..+|+||||+.
T Consensus 145 ~~~~~vI~DEaH~~~~~-----~~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSD-----SSYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHH-----HHHHHH---HH-SSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCH-----HHHHHH---Hc-CCCCeEEEEEeCcc
Confidence 35789999999976531 114444 22 66888999999986
No 174
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.07 E-value=0.057 Score=57.67 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=65.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 218 (394)
.+.+++|.++|+.-|.++++.+++. |+++..+||+++..+|.++++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3558999999999999888877653 789999999999999999999999999999999975 44467788999888
No 175
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.06 E-value=0.039 Score=56.69 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 221 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 221 (394)
++++||.++++.-+.++++.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|...-. ..++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 557999999999999999999874 778999999999999999999999999999999975332 4577888888544
No 176
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.85 E-value=0.073 Score=56.35 Aligned_cols=77 Identities=26% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEec
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 221 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 221 (394)
.++.+||.++.+..+.++.+.|++. | ..+..+|+++++.+|.+...+..+|+.+|+|+|-.+- -.-+++...||..+
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEEEc
Confidence 3557999999999999999999875 4 6789999999999999999999999999999996432 33466777777544
No 177
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=95.79 E-value=0.007 Score=57.21 Aligned_cols=76 Identities=22% Similarity=0.191 Sum_probs=44.6
Q ss_pred cccEEEeCCceec---ChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 17 SLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 17 ~~~il~~tPe~v~---tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
..+++++|.+.+. .+.....+.. ..+++|||||+|.+-..+. ..+.. +.. +.....++||||+...
T Consensus 107 ~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s---~~~~~---l~~-l~~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 107 KYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDS---KRYKA---LRK-LRARYRWLLSGTPIQN 175 (299)
T ss_dssp CSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTS---HHHHH---HHC-CCECEEEEE-SS-SSS
T ss_pred cceeeecccccccccccccccccccc----ccceeEEEecccccccccc---ccccc---ccc-cccceEEeeccccccc
Confidence 3567777777554 2222233333 2389999999999954442 11222 332 4467789999998877
Q ss_pred HHHHHHHHhC
Q 016133 94 VQKDVMESLC 103 (394)
Q Consensus 94 ~~~~i~~~l~ 103 (394)
...++...+.
T Consensus 176 ~~~dl~~~l~ 185 (299)
T PF00176_consen 176 SLEDLYSLLR 185 (299)
T ss_dssp GSHHHHHHHH
T ss_pred cccccccchh
Confidence 6666665553
No 178
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.54 E-value=0.49 Score=49.25 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=72.5
Q ss_pred HHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC-------ceEEecCCCCHHHHHHHHHHHh----cCCCeEEEec--ccc
Q 016133 139 VLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVAT--VAF 205 (394)
Q Consensus 139 ~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~~~iLVaT--~~~ 205 (394)
+...-++ -+++|++|-+--..+.+.+.+.|+ +..++-..-+ -..+++.+. .|.-.+|+|. --+
T Consensus 624 L~~~VPg-GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKl 699 (821)
T KOG1133|consen 624 LSNAVPG-GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKL 699 (821)
T ss_pred HHhhCCC-cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 3333454 589999999999999999887665 2334444433 234555554 4555677665 467
Q ss_pred ccccCCCC--ccEEEEecCCCC--------------------------------HHHHHHHHhhcccCCCCceEEEEEe
Q 016133 206 GMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 206 ~~GiD~p~--v~~VI~~~~p~s--------------------------------~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
+.|||+.| .+.||.+++|.. +-..-|-+|||-|.-+.=.++++++
T Consensus 700 SEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 700 SEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 89999987 688999998852 1123488899988776655666654
No 179
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.32 E-value=0.14 Score=54.20 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc-cccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-MGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-~GiD~p~v~~VI 218 (394)
.+.+++|-++|+.-+.++++.+++. |+++..+||+++..+|..+++...+|+.+|+|+|..+- ..+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3558999999999999988877653 78999999999999999999999999999999998644 457778888887
No 180
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.95 E-value=0.089 Score=57.80 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=64.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccCCCCccEEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 218 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 218 (394)
+.+++|.++|+.-|.+.++.|++. ++++..++|..+..++.++++.+.+|+++|||+|.. +...+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 457999999999999999888763 677889999999999999999999999999999984 44567888898887
No 181
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.61 E-value=0.1 Score=55.43 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI 218 (394)
.++.+||-++.+..+.++...|+.. |.++..+||++++.+|.....+..+|+.+|+|.|-.+- -.=+++...||
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEE
Confidence 3568999999999999999999765 88999999999999999999999999999999995322 22345666665
No 182
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.52 E-value=0.23 Score=51.73 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCccEEEEeCcHH----HHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERT----TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~----~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 218 (394)
.+.++..-++|-= +.+.+.++|...|+.+..+.|.+..+.|.++++...+|+++++|.|-| +...+++.+..+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 4567888899964 455556666677999999999999999999999999999999999987 56688898888887
No 183
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.11 E-value=0.43 Score=53.79 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 218 (394)
.+.+++|-++|+.-|.+++..|.+. ++.+..++++.+..++..+++.+.+|.++|||+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3568999999999999999988753 467888999999999999999999999999999974 44456777888877
No 184
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.90 E-value=0.3 Score=51.35 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=94.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc------------------eEEecCCCCHHHHHHHHHHHhcCC---CeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS------------------CAAYHAGLNDKARSSVLDDWISSR---KQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~------------------~~~~h~~l~~~~R~~~~~~f~~g~---~~iLVaT~ 203 (394)
+.++|||..+....+.+.+.|.+..++ -.-+.|..+..+|++.+++|.+.. .-++++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 457899999999988899999875332 234567788899999999998532 35889999
Q ss_pred ccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 204 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 204 ~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
+...|||+-..+-+|.|+..+++.-=.|.+-|.-|.|+...|+++----|...-++|-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999988888999999999999999999999999999998886655554444443
No 185
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.38 E-value=0.068 Score=60.74 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=77.6
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCC-CceEEecCCCCH-----------HHHHHHHHHHhcCCCeEEEeccccccccCCCC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLND-----------KARSSVLDDWISSRKQVVVATVAFGMGIDRKD 213 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g-~~~~~~h~~l~~-----------~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~ 213 (394)
-.+|+|++.+..+....+.+.+.+ ..+..+.|.+.+ ..+.+++..|...++.+|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 367999999999988888887652 233334444321 22567889999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHHhhcccCC
Q 016133 214 VRLVCHFNIPKSMEAFYQESGRAGRDQ 240 (394)
Q Consensus 214 v~~VI~~~~p~s~~~y~Qr~GRagR~g 240 (394)
+..|++++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997754
No 186
>PRK14701 reverse gyrase; Provisional
Probab=93.37 E-value=0.61 Score=54.35 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=54.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~ 205 (394)
.+.+++|.++|++-+.+++..|+.. ++.+..+||+++..++.++++.+.+|+.+|||+|+.+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 4558999999999999999999873 4677899999999999999999999999999999753
No 187
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.27 E-value=0.22 Score=52.41 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=55.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCeEEEeccccccc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 208 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~G 208 (394)
.+.+++||..-....+-+..++...+ ....+.|..+..+|+..+.+|.. .....|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46789999999999999999998888 77889999999999999999983 456688999888766
No 188
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=93.16 E-value=0.45 Score=48.27 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=46.5
Q ss_pred cEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 147 CAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
-+||+++|++-|.++...|... ++.+..+.|||.....++++.+ ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 4899999999999999999764 8999999999998887777665 778999996
No 189
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.4 Score=49.49 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=55.7
Q ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCccE
Q 016133 148 AIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 216 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~~ 216 (394)
+||.++|++-|.++++.+... ++.+..++||++...+.. .++.| .+|||||+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999888753 467899999998877664 44456 99999996 56666 88999999
Q ss_pred EEE
Q 016133 217 VCH 219 (394)
Q Consensus 217 VI~ 219 (394)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 190
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=92.98 E-value=0.18 Score=47.66 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=34.3
Q ss_pred ccEEEEecCCccccCCC---CCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 46 LNLVAIDEAHCISSWGH---DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~---~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
=.+||+||||....... .....-..+..|.+.+|+.+++..|||...+..
T Consensus 173 dgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 173 DGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred CceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 45899999998764321 011122345567788999999999999766543
No 191
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.24 E-value=0.92 Score=46.26 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=75.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 214 (394)
+..+||-++|++-|.++...+.+. ++.+..++||.+......-++ .-+.|+|||. .+.+| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 446999999999999999998875 445889999998766544333 2478999994 66666 688899
Q ss_pred cEEE--------EecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHH
Q 016133 215 RLVC--------HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 215 ~~VI--------~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 257 (394)
+++| ..++-..+...++.++|.-| ....+...-+.+.+.+
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~l 288 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQL 288 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHH
Confidence 9988 34455567788888888777 2333333345444443
No 192
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.03 E-value=1.2 Score=39.51 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-cCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-iD~p~ 213 (394)
.+.++||.++++..+.+++..+... ++.+..++|+.+..+.....+ +..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999999888777654 678889999988766543332 67789999952 2222 45566
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 66655
No 193
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.51 E-value=1.1 Score=41.22 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCC----CeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcc-cCCCCc
Q 016133 169 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 243 (394)
Q Consensus 169 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag-R~g~~g 243 (394)
++.+..++|+.+... -.|.++. ..|+|+=+.++||+.+++........-|+...+++|+.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 678888887665533 3444443 789999999999999999999999999998889999865555 677678
Q ss_pred eEEEEEecccHHHHHHHH
Q 016133 244 KSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 244 ~~i~l~~~~d~~~~~~i~ 261 (394)
.|-++.+++-...+..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 888888776555555544
No 194
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.40 E-value=0.92 Score=47.99 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cccc-ccCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRK 212 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p 212 (394)
...++||.|+|++-+.++++.+... ++.+..+||+.+.......+ .+..+|||+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457899999999999998887653 78889999998776543332 34578999994 3333 36788
Q ss_pred CccEEE
Q 016133 213 DVRLVC 218 (394)
Q Consensus 213 ~v~~VI 218 (394)
++.+||
T Consensus 149 ~l~~lV 154 (629)
T PRK11634 149 KLSGLV 154 (629)
T ss_pred hceEEE
Confidence 888877
No 195
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=90.75 E-value=0.65 Score=52.57 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=51.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCce---EEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
+.+++|.++|++-+.++++.+.+. |+.+ ..+||+++..++....+.+.+|..+|||+|..
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 568999999999999999888764 4433 36899999999999999999999999999974
No 196
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.69 E-value=0.94 Score=46.18 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=61.7
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc-------ccc-CCCCccE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGI-DRKDVRL 216 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-------~Gi-D~p~v~~ 216 (394)
++.+||.+++++-+.+....|...|+.+..++++.+..++..++..+..|+.+++++|.-.- ..+ ...++.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 34689999999999999999999999999999999999999999999999999999997421 112 4456777
Q ss_pred EE
Q 016133 217 VC 218 (394)
Q Consensus 217 VI 218 (394)
||
T Consensus 131 iV 132 (470)
T TIGR00614 131 IA 132 (470)
T ss_pred EE
Confidence 66
No 197
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.46 E-value=2.9 Score=42.27 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=51.4
Q ss_pred Ccc-EEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cc-ccccCCCC
Q 016133 145 DTC-AIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AF-GMGIDRKD 213 (394)
Q Consensus 145 ~~~-~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~-~~GiD~p~ 213 (394)
.++ .+|.|+|++-|.++...-++ .|+.+..+|||.+..+....++ ...-|+|||. +. -.++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 344 45668999998888765554 4888999999999988766555 4567999995 22 34678888
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
|.+.|
T Consensus 371 vS~LV 375 (731)
T KOG0339|consen 371 VSYLV 375 (731)
T ss_pred eeEEE
Confidence 88766
No 198
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.37 E-value=0.063 Score=56.67 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=91.2
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC-e-EEEeccccccccCCCCccEEEEecCC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-Q-VVVATVAFGMGIDRKDVRLVCHFNIP 223 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~-~-iLVaT~~~~~GiD~p~v~~VI~~~~p 223 (394)
.++|||+.-.....-+...|...++....|.|.|+...|.+.+..|..+.. . .+++..+.+.|+|+....+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999999999999999889999999999999999999999995432 2 55788999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCceEEE
Q 016133 224 KSMEAFYQESGRAGRDQLPSKSLL 247 (394)
Q Consensus 224 ~s~~~y~Qr~GRagR~g~~g~~i~ 247 (394)
+++..--|.+-||-|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999997766554
No 199
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=89.38 E-value=1.4 Score=46.30 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=60.3
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCCccEEE
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDVRLVC 218 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~v~~VI 218 (394)
+.+||.++++.-++.....|+..|+.+..+|++++..++..++..+..|..++++.|.-- ..-+...++.+||
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 468899999999999999999999999999999999999999999999999999988532 1223344566665
No 200
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.98 E-value=1.6 Score=44.38 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=53.1
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccc-cccCCCCc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFG-MGIDRKDV 214 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiD~p~v 214 (394)
.++||.++|++-+.++++.++.. ++.+..++|+.+...+...++ +..+|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 36899999999999999888753 578889999998766543332 5678999994 333 34678888
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88873
No 201
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.85 E-value=1.6 Score=48.43 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=64.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-ccccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-AFGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 218 (394)
.+.++.|.++|.=-|++-++.|+++ ++++..+..=.+.++...+++..++|+++|||+|- .++.+|-+.|..++|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4568999999998888877777764 56677788878899999999999999999999996 578899999999988
No 202
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=87.77 E-value=0.76 Score=48.62 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=56.1
Q ss_pred HHHHhcCCCeEEEeccccccccCCCCccEE--------EEecCCCCHHHHHHHHhhcccCCC---CceEEEEEecccHHH
Q 016133 188 LDDWISSRKQVVVATVAFGMGIDRKDVRLV--------CHFNIPKSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRR 256 (394)
Q Consensus 188 ~~~f~~g~~~iLVaT~~~~~GiD~p~v~~V--------I~~~~p~s~~~y~Qr~GRagR~g~---~g~~i~l~~~~d~~~ 256 (394)
-++|+.|+..|-|-+.+.+-||-+..-+.| |-+.+|+|...-+|..||+.|..+ |..++++-.-.-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999987765444 557899999999999999999875 444555544444444
Q ss_pred HHHHHH
Q 016133 257 MEFILS 262 (394)
Q Consensus 257 ~~~i~~ 262 (394)
+..+..
T Consensus 930 FAS~VA 935 (1300)
T KOG1513|consen 930 FASIVA 935 (1300)
T ss_pred HHHHHH
Confidence 444443
No 203
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=86.62 E-value=2.6 Score=42.39 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc------cccccCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p~v 214 (394)
+.++||.++|++-+.++++.+.. .++.+..++|+.+...+...+ .+..+|||+|.- ....++..++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35789999999999988876654 378899999999877654333 456789999962 2245677888
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 149 ~~lVi 153 (434)
T PRK11192 149 ETLIL 153 (434)
T ss_pred CEEEE
Confidence 88873
No 204
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.95 E-value=5 Score=40.68 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-------cccccCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-------FGMGIDRK 212 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-------~~~GiD~p 212 (394)
.-.++||.|+|++-+-+++...++. .+.+...-|||+-...+.+++ ...+|+|||+- -+.++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 4457999999999887777666543 678888899999887666554 56899999962 36678888
Q ss_pred CccEEEEecCCCCHHHHHH----HHhhcccCCCCceEEEEEecccHHHHHHHHHhcccC
Q 016133 213 DVRLVCHFNIPKSMEAFYQ----ESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 267 (394)
Q Consensus 213 ~v~~VI~~~~p~s~~~y~Q----r~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~~ 267 (394)
+|.+.|.=....-+++|.+ ++=|..= ...-.++|+..-...++.+..-+.++
T Consensus 327 siEVLvlDEADRMLeegFademnEii~lcp---k~RQTmLFSATMteeVkdL~slSL~k 382 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEGFADEMNEIIRLCP---KNRQTMLFSATMTEEVKDLASLSLNK 382 (691)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHhcc---ccccceeehhhhHHHHHHHHHhhcCC
Confidence 8888776655555555543 3333321 23335666665556666666555443
No 205
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.32 E-value=2.4 Score=44.39 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cccc--ccCCCCc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM--GIDRKDV 214 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~--GiD~p~v 214 (394)
.++||.++|++-+.++++.+.+. ++.+..+||+.+.......+ .+..+|||+|. .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 47999999999999999887654 67789999999876654433 35678999995 3322 3667777
Q ss_pred cEEE
Q 016133 215 RLVC 218 (394)
Q Consensus 215 ~~VI 218 (394)
++||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7766
No 206
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=85.03 E-value=0.3 Score=52.95 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccC-CCCCHHHHHHHHHHHHhC------CCCCEEEEeecC
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLRNYL------PDVPILALTATA 90 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~-g~~fr~~~~~l~~l~~~~------~~~~~l~lSAT~ 90 (394)
..++++|||....-.+ ......-...++++|+||.||+.+- |. .+..+ ..+..+ +.++.+++|--+
T Consensus 1021 ~~~~ittpek~dgi~R--sw~~r~~v~~v~~iv~de~hllg~~rgP----Vle~i-vsr~n~~s~~t~~~vr~~glsta~ 1093 (1230)
T KOG0952|consen 1021 ADIVITTPEKWDGISR--SWQTRKYVQSVSLIVLDEIHLLGEDRGP----VLEVI-VSRMNYISSQTEEPVRYLGLSTAL 1093 (1230)
T ss_pred CceEEcccccccCccc--cccchhhhccccceeecccccccCCCcc----eEEEE-eeccccCccccCcchhhhhHhhhh
Confidence 4688888885532111 1111111234889999999998753 32 11111 111111 234555553222
Q ss_pred ChhHHHHHHHHhCCCCCEEEecCCCC-----------CCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHH
Q 016133 91 APKVQKDVMESLCLQNPLVLKSSFNR-----------PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 159 (394)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~~~~-----------~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~ 159 (394)
.. ..++..+|+..+..-+. +..+ |..+|..+........ +..+....+..++|||+.+++...
T Consensus 1094 ~n--a~dla~wl~~~~~~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa---~qaik~~sp~~p~lifv~srrqtr 1167 (1230)
T KOG0952|consen 1094 AN--ANDLADWLNIKDMYNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPA---FQAIKTHSPIKPVLIFVSSRRQTR 1167 (1230)
T ss_pred hc--cHHHHHHhCCCCcCCCC-cccccCCceEeecCCCchhcchhhhhcccHH---HHHHhcCCCCCceEEEeecccccc
Confidence 22 24677888876541111 1111 1122222222211222 222223456779999999887665
Q ss_pred HHHHHH
Q 016133 160 ELSAYL 165 (394)
Q Consensus 160 ~l~~~L 165 (394)
..+.-|
T Consensus 1168 lta~~l 1173 (1230)
T KOG0952|consen 1168 LTALDL 1173 (1230)
T ss_pred cchHhH
Confidence 555444
No 207
>PRK09401 reverse gyrase; Reviewed
Probab=84.44 E-value=4.5 Score=45.98 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCC----Cce--EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc----cccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGG----ISC--AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g----~~~--~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~----~GiD~p~ 213 (394)
.+.+++|.++|+.-+.++++.+++.+ +.+ ...|++++..++.+..+.+.+|..+|+|+|.-.- ..+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 35689999999999999999998753 333 4456677778888888999999999999996221 1344444
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
++++|
T Consensus 202 ~~~lV 206 (1176)
T PRK09401 202 FDFVF 206 (1176)
T ss_pred cCEEE
Confidence 67666
No 208
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.14 E-value=3.8 Score=41.05 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----c-ccccCCCCcc
Q 016133 146 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F-GMGIDRKDVR 215 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p~v~ 215 (394)
.++||.++|++-|.++++.+.. .++.+..++|+.+....... + .+..+|||+|.- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---L-ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 4689999999999998876654 37888999999876554332 2 345789999972 2 2346788898
Q ss_pred EEEE
Q 016133 216 LVCH 219 (394)
Q Consensus 216 ~VI~ 219 (394)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8884
No 209
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=84.01 E-value=4.1 Score=43.01 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=53.5
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.+||.+++++-+.+....|...|+.+..++++.+..++..++..+.+|+++++++|+
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 4689999999999999999999999999999999999999999999999999999884
No 210
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.04 E-value=5.9 Score=38.83 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc---
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--- 204 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--- 204 (394)
.+-.|..++.+.....++|.++|++-+.++++.+... |+.+..+-||++..... .. ...+..|||||.-
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~--L~kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQ--LSKKPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH--HH--hhcCCCEEEeCcHHHH
Confidence 4455666777666667999999999999999999875 67789999999765432 22 2346789999962
Q ss_pred --c--ccccCCCCccEEEE
Q 016133 205 --F--GMGIDRKDVRLVCH 219 (394)
Q Consensus 205 --~--~~GiD~p~v~~VI~ 219 (394)
+ ..|+....+++.|.
T Consensus 192 dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHhccCccHHHhHHHhh
Confidence 2 57888888888763
No 211
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=83.04 E-value=4.8 Score=40.84 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=51.8
Q ss_pred cEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc------ccccccCCCCccE
Q 016133 147 CAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV------AFGMGIDRKDVRL 216 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~------~~~~GiD~p~v~~ 216 (394)
++||.++|++-|.++.+.+... ++.+..++|+.+....... ..+..+|+|+|. .....+++.++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK----LRGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH----HcCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 6899999999999998888753 6678889999886653322 246789999995 2244567888888
Q ss_pred EEE
Q 016133 217 VCH 219 (394)
Q Consensus 217 VI~ 219 (394)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 773
No 212
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.06 E-value=1 Score=39.16 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=28.0
Q ss_pred CCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 14 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 14 g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
..+..+|++++-..+..|.....+. ... ..-.+|||||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~-~~~-~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLF-GID-LKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHC-T---CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhc-ccc-ccCcEEEEecccchHHH
Confidence 3345788887777777776544443 111 22458999999998764
No 213
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=81.75 E-value=5.4 Score=44.72 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=52.9
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc--CCCeEEEeccc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVA 204 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~iLVaT~~ 204 (394)
++.+||.+++++-+..-...|...|+++..+.++++..++..++..+.. |+++||++|.-
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 3468999999999987777788889999999999999999999999887 89999999973
No 214
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=81.72 E-value=8.9 Score=41.12 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc---c-------
Q 016133 140 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA---F------- 205 (394)
Q Consensus 140 l~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~---~------- 205 (394)
+....+..+.|.++|..-|.+.++.+.. .|+++..+.|+++.++|..... .+|+++|.. |
T Consensus 92 l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~rlgfDyLrd~~ 165 (745)
T TIGR00963 92 LNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNNELGFDYLRDNM 165 (745)
T ss_pred HHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCCchhhHHHhccc
Confidence 3444455799999999988888887765 4899999999999887766553 689999987 1
Q ss_pred ---ccccCCCCccEEE
Q 016133 206 ---GMGIDRKDVRLVC 218 (394)
Q Consensus 206 ---~~GiD~p~v~~VI 218 (394)
...+...++.++|
T Consensus 166 ~~~~~~~~~r~l~~aI 181 (745)
T TIGR00963 166 AHSKEEKVQRPFHFAI 181 (745)
T ss_pred ccchhhhhccccceeE
Confidence 1134566777766
No 215
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=81.43 E-value=1.2 Score=47.83 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=27.5
Q ss_pred ccEEEeCCceecChHHHHHHHh---hccCCCccEEEEecCCccc
Q 016133 18 LRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 58 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~---~~~~~~l~~iVvDEaH~l~ 58 (394)
.+|+|+||..++-.-+...+.. ......+.++||||||.++
T Consensus 165 ~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 165 SDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred CCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 5799999887754433333211 1224569999999999985
No 216
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.28 E-value=11 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHH-HHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDK-ARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~-~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+..++||.++++.-++++...+... +..+..+|++.+.. +....+ .+...|+|+|.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~ 103 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTP 103 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEH
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCc
Confidence 4458999999999999999888765 45788899998854 222222 67889999995
No 217
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=81.14 E-value=6.5 Score=40.07 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=53.4
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~v 214 (394)
..++||.++|++-+.++++.++.. ++.+..++|+.+.... .+.+..+..+|||+|.-. ...+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 347899999999999998887654 6788899999875543 345567788999999631 224566778
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 87773
No 218
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=80.68 E-value=3.4 Score=31.22 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=33.8
Q ss_pred hCCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 142 ANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 142 ~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
..+..++||||.+-..+..++..|.+.|+. +..+.||+..
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 345678999999988999999999999987 8888998743
No 219
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=80.09 E-value=2.9 Score=31.75 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3468999999877888899999999998899999974
No 220
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=79.89 E-value=2.3 Score=47.06 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=42.0
Q ss_pred hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCC
Q 016133 40 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 107 (394)
Q Consensus 40 ~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~ 107 (394)
.+.+.++.|+|+||||.+-.|-. .++..+.+. ...+.++||.|+-....-.+...+.+--|
T Consensus 732 AFkrkrWqyLvLDEaqnIKnfks------qrWQAllnf-nsqrRLLLtgTPLqNslmELWSLmhFLmP 792 (1958)
T KOG0391|consen 732 AFKRKRWQYLVLDEAQNIKNFKS------QRWQALLNF-NSQRRLLLTGTPLQNSLMELWSLMHFLMP 792 (1958)
T ss_pred HHHhhccceeehhhhhhhcchhH------HHHHHHhcc-chhheeeecCCchhhHHHHHHHHHHHhhc
Confidence 34456799999999999987652 344444433 35678999999877766666666654444
No 221
>PLN02955 8-amino-7-oxononanoate synthase
Probab=78.75 E-value=25 Score=35.84 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.8
Q ss_pred EEeCcHHHHHHHHHHHHhCCCce----------------EEecCCCCHHHHHHHHHHHh
Q 016133 150 VYCLERTTCDELSAYLSAGGISC----------------AAYHAGLNDKARSSVLDDWI 192 (394)
Q Consensus 150 VF~~s~~~~~~l~~~L~~~g~~~----------------~~~h~~l~~~~R~~~~~~f~ 192 (394)
|++.+...+..+++.|.+.|+-+ ..+++..+.++-...++.+.
T Consensus 398 I~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~ 456 (476)
T PLN02955 398 LVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALS 456 (476)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHH
Confidence 66788888999999999988743 34677777877777766664
No 222
>PTZ00110 helicase; Provisional
Probab=78.02 E-value=6.9 Score=40.72 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=50.7
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 214 (394)
+..+||.++|++-|.++.+.+.+. ++.+...+|+.+...... .+.. ...|||+|. .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 345899999999999999888775 466788888887654433 2333 478999995 44444 567788
Q ss_pred cEEE
Q 016133 215 RLVC 218 (394)
Q Consensus 215 ~~VI 218 (394)
++||
T Consensus 279 ~~lV 282 (545)
T PTZ00110 279 TYLV 282 (545)
T ss_pred cEEE
Confidence 8877
No 223
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.58 E-value=4.5 Score=37.33 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=62.1
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc----cc--ccccCCCCc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV----AF--GMGIDRKDV 214 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~----~~--~~GiD~p~v 214 (394)
-.++|.|.|++-+-++....... +.++..+.||++-+.-.+.++. -..|+|+|+ ++ .+.+++.+|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhc
Confidence 36899999999998887665432 6788999999987765555443 678999997 22 455777777
Q ss_pred cEEEEecCCC-----CHHHHHHHHhhcccC
Q 016133 215 RLVCHFNIPK-----SMEAFYQESGRAGRD 239 (394)
Q Consensus 215 ~~VI~~~~p~-----s~~~y~Qr~GRagR~ 239 (394)
.+-+.=...+ ++..=+|++=|+.-.
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~tp~ 216 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRMTPH 216 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7766433332 333446777776543
No 224
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=77.04 E-value=3.3 Score=32.05 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
+..+++|||.+-..+...+..|...|+.+..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 45689999998888899999999999998888898743
No 225
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=76.04 E-value=7.6 Score=40.50 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=53.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.+||-.+=..-.+.=...|+..|+.+..+||.++.++|..++..+..|++++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 45799999998888888889999999999999999999999999999999999886654
No 226
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=75.81 E-value=10 Score=41.15 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-ccccc---------cC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-AFGMG---------ID 210 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~G---------iD 210 (394)
++.++|+.++|++-+.++...|++. ++.+..++|+.+..+|..+ ....+|||+|. .+-.+ ..
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i-----~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA-----REHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH-----hcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 3457999999999999999988875 5778899999998776432 23478999996 22222 12
Q ss_pred CCCccEEEE
Q 016133 211 RKDVRLVCH 219 (394)
Q Consensus 211 ~p~v~~VI~ 219 (394)
+.++++||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567888873
No 227
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=75.71 E-value=5.7 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=31.7
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
.+..++||||++-..+...+..|...|+ ++..+.||+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3456899999998888889999999998 5888888873
No 228
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=74.65 E-value=5.7 Score=30.82 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=30.8
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
.+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45568999999877777888899999985 777888864
No 229
>PRK13766 Hef nuclease; Provisional
Probab=74.64 E-value=15 Score=39.84 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=54.2
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhC-CC---ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc------cccccCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRK 212 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p 212 (394)
.+++++||.|+|+.-+++.++.+++. +. .+..++|+.+..+|.... . ..+|+|+|.- +..-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~--~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---E--KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---h--CCCEEEECHHHHHHHHHcCCCChh
Confidence 34568999999999998888888764 33 688899999988876543 2 3579999962 23345677
Q ss_pred CccEEEEec
Q 016133 213 DVRLVCHFN 221 (394)
Q Consensus 213 ~v~~VI~~~ 221 (394)
++++||.-.
T Consensus 131 ~~~liVvDE 139 (773)
T PRK13766 131 DVSLLIFDE 139 (773)
T ss_pred hCcEEEEEC
Confidence 788887433
No 230
>PF13173 AAA_14: AAA domain
Probab=72.44 E-value=3.4 Score=33.77 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=25.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
.-.+|++||+|.+.+|. ..+..+....++.++++ |++.
T Consensus 61 ~~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii~-tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKIIL-TGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHH-------HHHHHHHHhccCceEEE-Eccc
Confidence 46789999999998776 34555666555555554 4443
No 231
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.16 E-value=12 Score=39.68 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 100 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 100 (394)
.++.+++||||+|.|... ....|.+..+..|+.-+++|..|-+..+...|..
T Consensus 122 ~gr~KViIIDEah~Ls~~------AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH------AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cCCceEEEEEChHhcCHH------HHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 466889999999998742 2344544444445444566666655555554444
No 232
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=70.86 E-value=30 Score=27.33 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
....++||.|++...++.+.+.+.... ..+..+++........ ........++++|..
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 355689999999999988888876654 7788888876655544 233456778888865
No 233
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=70.72 E-value=9.3 Score=30.39 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
++.++||||++-..+..++..|...|+. +..|.||+.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4668999999988888999999999984 778888763
No 234
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=70.35 E-value=9.1 Score=42.95 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=74.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 223 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p 223 (394)
...++|||+.--..-+.+...+.-+++.....-++ +.-...+..|++ --..++-+...+.|+|+-+..+|+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 44589999988887777777777776654333332 223345556665 23356778899999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCceEE
Q 016133 224 KSMEAFYQESGRAGRDQLPSKSL 246 (394)
Q Consensus 224 ~s~~~y~Qr~GRagR~g~~g~~i 246 (394)
.++..-.|.+||..|-|+.-...
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchh
Confidence 99999999999999999765433
No 235
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=70.15 E-value=6.5 Score=30.60 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+. +..|.||+.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 4568999999988888899999999985 777888763
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.61 E-value=6.7 Score=31.69 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=22.3
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
..+|||||||.+. . ...+..|..+.+ .++. .+.+++|+
T Consensus 88 ~~~lviDe~~~l~--~---~~~l~~l~~l~~-~~~~-~vvl~G~~ 125 (131)
T PF13401_consen 88 VVLLVIDEADHLF--S---DEFLEFLRSLLN-ESNI-KVVLVGTP 125 (131)
T ss_dssp EEEEEEETTHHHH--T---HHHHHHHHHHTC-SCBE-EEEEEESS
T ss_pred CeEEEEeChHhcC--C---HHHHHHHHHHHh-CCCC-eEEEEECh
Confidence 4689999999974 1 444455544444 2233 35555654
No 237
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=69.19 E-value=21 Score=36.32 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CC---ceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc------ccc
Q 016133 137 CSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV------AFG 206 (394)
Q Consensus 137 ~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~------~~~ 206 (394)
...+...++ ++|+.++|+--+.+-+..+.+. |+ .+..+.|..++++|... |.+ .+|+|||+ +.+
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~---w~~--~kVfvaTPQvveNDl~~ 124 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREEL---WAK--KKVFVATPQVVENDLKA 124 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHH---Hhh--CCEEEeccHHHHhHHhc
Confidence 334555555 8999999998888888888764 55 46799999999999765 444 46999994 444
Q ss_pred cccCCCCccEEEE
Q 016133 207 MGIDRKDVRLVCH 219 (394)
Q Consensus 207 ~GiD~p~v~~VI~ 219 (394)
-=+|..++.++|.
T Consensus 125 Grid~~dv~~lif 137 (542)
T COG1111 125 GRIDLDDVSLLIF 137 (542)
T ss_pred CccChHHceEEEe
Confidence 4579999998884
No 238
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=68.86 E-value=11 Score=29.70 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc--eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS--CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~--~~~~h~~l~~ 181 (394)
+..+++|||.+-..+...+..|...|+. +..+.||++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3568999999877777788999999984 7889999843
No 239
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=68.60 E-value=23 Score=34.21 Aligned_cols=75 Identities=8% Similarity=0.014 Sum_probs=42.2
Q ss_pred ccEEEeCCce--ecChHHHHHHHhh---ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 18 LRLLYVTPEL--TATPGFMSKLKKI---HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 18 ~~il~~tPe~--v~tp~~~~~l~~~---~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.++.++.|+- +............ ...+..+++||||||.+... ....|.+..+..|+.-+++|+++-+.
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChH
Confidence 4678888872 2212222222221 23456789999999988642 23456556666666556666666544
Q ss_pred hHHHHH
Q 016133 93 KVQKDV 98 (394)
Q Consensus 93 ~~~~~i 98 (394)
.+...|
T Consensus 152 ~ll~TI 157 (329)
T PRK08058 152 QILPTI 157 (329)
T ss_pred hCcHHH
Confidence 444433
No 240
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=68.41 E-value=13 Score=40.06 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
++.+++||||+|.|..- .+..|.++.+..+..-+++|+.|-...+.
T Consensus 118 gr~KVIIIDEah~LT~~------A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH------AFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred CCceEEEEeChhhCCHH------HHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 56789999999998752 23445445555555555666666544443
No 241
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.33 E-value=12 Score=37.89 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=48.7
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCcc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVR 215 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~ 215 (394)
..+||+++|++-+.+++..-++. +..+...+|+.+. ....++....++|+|||. .+.+| |.+++++
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~----~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL----GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch----hhhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 46899999999999999888764 4556667777332 234456677899999994 45555 4555666
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 554
No 242
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=68.10 E-value=7.4 Score=29.79 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=30.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 457999999877778889999999999777888874
No 243
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=67.95 E-value=61 Score=35.78 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=46.2
Q ss_pred HHHHHHhCCCccEEEEeCcHH----HHHHHHHHHHhCC--CceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 136 LCSVLKANGDTCAIVYCLERT----TCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 136 l~~~l~~~~~~~~IVF~~s~~----~~~~l~~~L~~~g--~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+..+++.. ..++|++.+|+. +.+.+.+++...+ +.+..|+|+.++++|. .+..+..+||++|.
T Consensus 107 ld~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNp 175 (851)
T COG1205 107 LDHLLRDP-SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNP 175 (851)
T ss_pred HHHHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCH
Confidence 33444433 336788888874 5566667776666 7889999999999887 55668899999985
No 244
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=67.92 E-value=6.5 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC--ceEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~ 181 (394)
+..+++|||++-..+...+..|...|+ ++..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 456899999998888899999999999 68899999743
No 245
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=67.63 E-value=4.5 Score=38.42 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
+.+|++++-..+..|.....+.. .. .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~--~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSI--EL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcc--cc-cccEEEEeCccChHH
Confidence 46777777666666653322211 11 357899999998764
No 246
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=67.63 E-value=4.5 Score=38.42 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=24.9
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
+.+|++++-..+..|.....+.. .. .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~--~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSI--EL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcc--cc-cccEEEEeCccChHH
Confidence 46777777666666653322211 11 357899999998764
No 247
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=67.47 E-value=12 Score=39.65 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=55.0
Q ss_pred CcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
..+.|+++|-.++.|..- .+++. ++.++|+|||+.+-.-.. .++..|+. +.-...++||+|+-....
T Consensus 672 a~fhVviTSYQlvVtDek--y~qkv----KWQYMILDEAQAIKSSsS------~RWKtLLs-F~cRNRLLLTGTPIQNsM 738 (1185)
T KOG0388|consen 672 APFHVVITSYQLVVTDEK--YLQKV----KWQYMILDEAQAIKSSSS------SRWKTLLS-FKCRNRLLLTGTPIQNSM 738 (1185)
T ss_pred CCceEEEEeeeeeechHH--HHHhh----hhhheehhHHHHhhhhhh------hHHHHHhh-hhccceeeecCCccchHH
Confidence 358999999998888762 22332 378999999998764221 23333332 223557999999988888
Q ss_pred HHHHHHhCCCCCEEE
Q 016133 96 KDVMESLCLQNPLVL 110 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~ 110 (394)
+.+...|.+--|..+
T Consensus 739 qELWALLHFIMPsLF 753 (1185)
T KOG0388|consen 739 QELWALLHFIMPSLF 753 (1185)
T ss_pred HHHHHHHHHHhhHhh
Confidence 888887765544433
No 248
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.34 E-value=16 Score=38.67 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=29.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.++.+++||||+|.++.- .+..|.+.....|+.-+++|.+|-+..+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~------a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNT------AFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 456889999999998742 244554444554554455566665554443
No 249
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=67.10 E-value=1.1e+02 Score=29.37 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=77.9
Q ss_pred HHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCc---cccCCCCCHHHHHHHHHHHHhCCCCCE
Q 016133 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPI 83 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~---l~~~g~~fr~~~~~l~~l~~~~~~~~~ 83 (394)
+++.+.+.. ++=+++.| .-.+......+... .+-+|++|.... +..-+.|.......+...+-..+..++
T Consensus 106 ~~~~l~~~~--vdGiIi~~-~~~~~~~~~~l~~~----~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i 178 (333)
T COG1609 106 YLETLLQKR--VDGLILLG-ERPNDSLLELLAAA----GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRI 178 (333)
T ss_pred HHHHHHHcC--CCEEEEec-CCCCHHHHHHHHhc----CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCceE
Confidence 445555554 66677676 22233333344332 477899987544 222233444444443333333445677
Q ss_pred EEEeecCChhH-HH------HHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHH
Q 016133 84 LALTATAAPKV-QK------DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 156 (394)
Q Consensus 84 l~lSAT~~~~~-~~------~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~ 156 (394)
.++++...... .. +.....++.. . +.. ..............+.+++......+.-|||.+-.
T Consensus 179 ~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~--------~-~~~--i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~nD~ 247 (333)
T COG1609 179 AFIGGPLDSSASRERLEGYRAALREAGLPI--------N-PEW--IVEGDFSEESGYEAAERLLARGEPRPTAIFCANDL 247 (333)
T ss_pred EEEeCCCccccHhHHHHHHHHHHHHCCCCC--------C-cce--EEecCCChHHHHHHHHHHHhcCCCCCcEEEEcCcH
Confidence 88887742221 11 1111122221 0 111 11111123456677777777655447899999999
Q ss_pred HHHHHHHHHHhCCCc
Q 016133 157 TCDELSAYLSAGGIS 171 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~ 171 (394)
.+--+...+.+.|+.
T Consensus 248 ~Alg~l~~~~~~g~~ 262 (333)
T COG1609 248 MALGALRALRELGLR 262 (333)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999887765
No 250
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.09 E-value=17 Score=37.55 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
.++.+++||||+|.++. ..+..|.+.....|+.-.++|.+|-+..+
T Consensus 117 ~~~~kV~iIDE~~~ls~------~a~naLLk~LEepp~~~~fIlattd~~kl 162 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSG------HSFNALLKTLEEPPSHVKFILATTDHHKL 162 (509)
T ss_pred cCCcEEEEEEChHhcCH------HHHHHHHHHHhccCCCeEEEEEECChHhc
Confidence 45688999999999874 23445555556555444444544544333
No 251
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=66.68 E-value=2.1e+02 Score=31.52 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecC--CCCCCeEEEEEEcCc-------------hhhHHHHHHHHH----Hh
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYKDL-------------LDDAYADLCSVL----KA 142 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~~nl~~~v~~~~~-------------~~~~~~~l~~~l----~~ 142 (394)
-+++.|.|+.|.. -+...|++.-+..+..+ .+..+++..+..... ..+....|-+.| +.
T Consensus 482 sIiLtSGTLsP~~--s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rv 559 (945)
T KOG1132|consen 482 SIILTSGTLSPMD--SFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVARV 559 (945)
T ss_pred eEEEecccccCch--hHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHhh
Confidence 3677799988764 33566666544433322 222223322222211 112223333333 33
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCC-------CceEEecCCCCHHHHHHHHHHHh--------cCCCeEEEecccccc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGG-------ISCAAYHAGLNDKARSSVLDDWI--------SSRKQVVVATVAFGM 207 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g-------~~~~~~h~~l~~~~R~~~~~~f~--------~g~~~iLVaT~~~~~ 207 (394)
-+. -.|||.++-...+.+..+....+ ..-..+- --+..+-.+++.+|. .|-+-..||--..++
T Consensus 560 Vp~-G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSE 637 (945)
T KOG1132|consen 560 VPY-GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSE 637 (945)
T ss_pred ccc-ceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccC
Confidence 333 38999999987777755554321 1111111 112222233344443 234456788889999
Q ss_pred ccCCCC--ccEEEEecCCC
Q 016133 208 GIDRKD--VRLVCHFNIPK 224 (394)
Q Consensus 208 GiD~p~--v~~VI~~~~p~ 224 (394)
|+|+.| -+.||-.++|.
T Consensus 638 GlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 638 GLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCCccccCCceeEEecCCC
Confidence 999976 56799999884
No 252
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=66.56 E-value=35 Score=33.96 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=43.5
Q ss_pred cccEEEeCCceec-ChHHHHHHH----hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 17 SLRLLYVTPELTA-TPGFMSKLK----KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 17 ~~~il~~tPe~v~-tp~~~~~l~----~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
..++.++.|+... .-+-+..+. .....+...+++|||+|.+..-. -..|.+..+..|+..++++++|-+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECCh
Confidence 3567788887321 111222332 22224567899999999986422 233444455555566677777765
Q ss_pred hhHHHHHHH
Q 016133 92 PKVQKDVME 100 (394)
Q Consensus 92 ~~~~~~i~~ 100 (394)
..+...|..
T Consensus 158 ~~llpTIrS 166 (394)
T PRK07940 158 EDVLPTIRS 166 (394)
T ss_pred HHChHHHHh
Confidence 555544443
No 253
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=66.35 E-value=84 Score=28.81 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=69.9
Q ss_pred CCccEEEEeCc------------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCeEEEeccccccc
Q 016133 144 GDTCAIVYCLE------------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 208 (394)
Q Consensus 144 ~~~~~IVF~~s------------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~G 208 (394)
+.+.+||+.|. ...++.++..|++.|+.+ ..+..++..+-.+.++.|.+ ....++|.. .++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 44566777663 477999999999999987 46778888888888999985 233444443 56778
Q ss_pred cCCCCccEEEEec-CCCCHHHHHHHHh--hcc-cCCCCceEEEEEec
Q 016133 209 IDRKDVRLVCHFN-IPKSMEAFYQESG--RAG-RDQLPSKSLLYYGM 251 (394)
Q Consensus 209 iD~p~v~~VI~~~-~p~s~~~y~Qr~G--Rag-R~g~~g~~i~l~~~ 251 (394)
.. ..++-.| -+-++.+.++... ++- -.|++...++--..
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACR 128 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACR 128 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCC
Confidence 65 6777777 6677888888875 321 23556555554433
No 254
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=66.24 E-value=39 Score=28.89 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=46.1
Q ss_pred cccEEEeCCce----ecChHHHHHHHhhcc----CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEee
Q 016133 17 SLRLLYVTPEL----TATPGFMSKLKKIHS----RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 88 (394)
Q Consensus 17 ~~~il~~tPe~----v~tp~~~~~l~~~~~----~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSA 88 (394)
..++.++.|+. +.-... ..+..... .+..+++||||||.|.. .....|.+..+..|..-+++|++
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~i-r~i~~~~~~~~~~~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQI-REIIEFLSLSPSEGKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHH-HHHHHHCTSS-TTSSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEE
T ss_pred CcceEEEecccccchhhHHHH-HHHHHHHHHHHhcCCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEE
Confidence 45777778773 332222 23322222 34578999999998864 33456666777777666777777
Q ss_pred cCChhHHHHHHH
Q 016133 89 TAAPKVQKDVME 100 (394)
Q Consensus 89 T~~~~~~~~i~~ 100 (394)
+-+..+...|..
T Consensus 140 ~~~~~il~TI~S 151 (162)
T PF13177_consen 140 NNPSKILPTIRS 151 (162)
T ss_dssp S-GGGS-HHHHT
T ss_pred CChHHChHHHHh
Confidence 766666665543
No 255
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=66.23 E-value=29 Score=37.27 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcC--CCeEEEeccccccc
Q 016133 140 LKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMG 208 (394)
Q Consensus 140 l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~~~~~G 208 (394)
.+....++-||.|++- ..+.+-..|.+. .+.+..|||. +.+|.++-..+..+ ..+|||+|--+..|
T Consensus 443 kq~g~~gpHLVVvPsS-TleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 443 KQIGNPGPHLVVVPSS-TLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHcCCCCCcEEEecch-hHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 3444567889999874 234444444443 5678999996 58899999999876 78899999655443
No 256
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=65.99 E-value=16 Score=27.61 Aligned_cols=37 Identities=22% Similarity=0.496 Sum_probs=31.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4568999999988999999999999985 777888763
No 257
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=65.98 E-value=9.2 Score=30.25 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCccEEEEeCcH--HHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 144 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~--~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
+..+++|||++- ..+..++..|...|+++..+.||+..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 456899999975 36888899999999998889998743
No 258
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=65.90 E-value=23 Score=37.57 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=44.5
Q ss_pred HhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 141 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 141 ~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
....+..++|.++|+.-|.+.++.+.. .|+.+..+.|++++++|.... ..+|+++|+
T Consensus 140 ~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 140 AALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred HhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 334466899999999998888877765 589999999999887666543 458999995
No 259
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.82 E-value=41 Score=34.50 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=41.7
Q ss_pred cccEEEeCCceecChHHHHHH----HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 17 SLRLLYVTPELTATPGFMSKL----KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l----~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
..+++.+.+..-..-.-...+ ......+..+++||||+|.+... .+..|.+..+..|+.-++.|.+|-..
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 457777666421111112222 22223456789999999988742 34555555555555445556666555
Q ss_pred hHHHHHH
Q 016133 93 KVQKDVM 99 (394)
Q Consensus 93 ~~~~~i~ 99 (394)
.+...|.
T Consensus 158 Kl~~tI~ 164 (491)
T PRK14964 158 KIPVTII 164 (491)
T ss_pred HHHHHHH
Confidence 5444333
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=65.60 E-value=14 Score=37.50 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHhcCCCcccEEEeCCceecChHHHHH-------HHhh-ccCCCccEEEEecCCccc
Q 016133 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKI-HSRGLLNLVAIDEAHCIS 58 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe~v~tp~~~~~-------l~~~-~~~~~l~~iVvDEaH~l~ 58 (394)
+...+....+..+++|++++.+... +... +... ......++|||||+|.+.
T Consensus 161 i~~~l~~~~~~~~v~yv~~~~f~~~-~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 161 AKNYIESNFSDLKVSYMSGDEFARK-AVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred HHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHHhhhHHHHHHHHhccCCEEEEecccccc
Confidence 3444454455689999998844321 1111 1111 112458899999999875
No 261
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=65.15 E-value=4.2 Score=42.76 Aligned_cols=74 Identities=27% Similarity=0.262 Sum_probs=43.1
Q ss_pred ccEEEeCCceecC-hH-------HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 18 LRLLYVTPELTAT-PG-------FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 18 ~~il~~tPe~v~t-p~-------~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
++|+++|-..++. |. -..-|.+. .+..||+||||.+-.... ..-..+..|+ ..-..++|+|
T Consensus 432 YDvViTTY~lva~~~~~e~~~~~~~spL~~I----~W~RVILDEAH~IrN~~t---q~S~AVC~L~----a~~RWclTGT 500 (901)
T KOG4439|consen 432 YDVVITTYNLVANKPDDELEEGKNSSPLARI----AWSRVILDEAHNIRNSNT---QCSKAVCKLS----AKSRWCLTGT 500 (901)
T ss_pred cceEEEeeeccccCCchhhhcccCccHHHHh----hHHHhhhhhhhhhcccch---hHHHHHHHHh----hcceeecccC
Confidence 7888888887664 11 01111222 267899999998865331 1112333333 3457889999
Q ss_pred CChhHHHHHHHHh
Q 016133 90 AAPKVQKDVMESL 102 (394)
Q Consensus 90 ~~~~~~~~i~~~l 102 (394)
+-..-.-|+...+
T Consensus 501 PiqNn~~DvysLl 513 (901)
T KOG4439|consen 501 PIQNNLWDVYSLL 513 (901)
T ss_pred ccccchhHHHHHH
Confidence 8776555555544
No 262
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.62 E-value=17 Score=37.17 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 100 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 100 (394)
.+...++||||||.+... ....|.......|..-++.+.+|-+..+...|..
T Consensus 119 ~g~~KV~IIDEah~Ls~~------A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQ------SFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cCCCEEEEEechhhcCHH------HHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 345779999999998642 2344434444444333444555544444333333
No 263
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=64.48 E-value=12 Score=28.56 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=28.6
Q ss_pred CccEEEEeCc--HHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 145 DTCAIVYCLE--RTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 145 ~~~~IVF~~s--~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
..+++|||.+ +..+...+..|.+.|+ ++..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 4557788889999887 4777888874
No 264
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=64.42 E-value=33 Score=37.68 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
.+..+.|.++|+.-|.+.++.+.. .|+.+..++|+++..+|.... ..+|+++|+.
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 445689999999999888888875 488999999999998886654 4789999974
No 265
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=64.00 E-value=6.6 Score=38.34 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCccEEEEecCCcccc
Q 016133 43 RGLLNLVAIDEAHCISS 59 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~ 59 (394)
....++|||||||++.+
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 35689999999999987
No 266
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=63.77 E-value=17 Score=38.51 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=29.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.++..++||||+|.|.. .....|.+.....|+.-+++|..|-+..+.
T Consensus 117 ~g~~KV~IIDEah~Ls~------~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCEEEEEechHhCCH------HHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 45688999999999874 234555555565554444555555444443
No 267
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=63.73 E-value=14 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=30.5
Q ss_pred CCccEEEEeCc-HHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLE-RTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s-~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..++||||.+ -..+...+..|...|+. +..+.||+.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46689999998 57788888999999976 788888874
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=62.74 E-value=8.2 Score=36.75 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC--CCCEEEE
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILAL 86 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~l~l 86 (394)
-.+.++||||.|.++... .+..-.-+..|+.... +++++++
T Consensus 144 ~~vrmLIIDE~H~lLaGs--~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--YRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred cCCcEEEeechHHHhccc--HHHHHHHHHHHHHHhhccCCCeEEe
Confidence 348999999999988644 2332222222222222 6777765
No 269
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=62.70 E-value=12 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
+..++++||++-..+...+..|.+.|+ ++..++||+.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 356899999998888889999998887 5777899863
No 270
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=62.61 E-value=11 Score=29.24 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
+..+++|||++-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 3568999999988888899999999985 7788998754
No 271
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=62.56 E-value=32 Score=33.30 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=43.6
Q ss_pred cccEEEeCCcee----cChHHHHHHHh----hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEee
Q 016133 17 SLRLLYVTPELT----ATPGFMSKLKK----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 88 (394)
Q Consensus 17 ~~~il~~tPe~v----~tp~~~~~l~~----~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSA 88 (394)
..++.++.||-- .... ...+.+ ....+..+++||||||.|..- ....|-+..+..|+.-+++|++
T Consensus 71 HPD~~~i~~~~~~~~i~id~-iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~------aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 71 HPDNFVLEPEEADKTIKVDQ-VRELVSFVVQTAQLGGRKVVLIEPAEAMNRN------AANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred CCCEEEEeccCCCCCCCHHH-HHHHHHHHhhccccCCCeEEEECChhhCCHH------HHHHHHHHHhCCCCCeEEEEEE
Confidence 457888888732 2222 222322 223456888999999998742 2345555556655544555666
Q ss_pred cCChhHHHHHHH
Q 016133 89 TAAPKVQKDVME 100 (394)
Q Consensus 89 T~~~~~~~~i~~ 100 (394)
+-+..+...|..
T Consensus 144 ~~~~~ll~TI~S 155 (328)
T PRK05707 144 HQPSRLLPTIKS 155 (328)
T ss_pred CChhhCcHHHHh
Confidence 655555444433
No 272
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=62.50 E-value=6.9 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3568999998877788889999999986 788888864
No 273
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=62.04 E-value=11 Score=40.26 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCccEEEEecCCcccc-----CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 34 MSKLKKIHSRGLLNLVAIDEAHCISS-----WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 34 ~~~l~~~~~~~~l~~iVvDEaH~l~~-----~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
+..|.+..-..-=++||+||||.--. -|.. -..=..+..|.+.+|+.+++.-|||-.
T Consensus 394 ~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~-TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 394 FRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKS-TKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred HHHHHHHhhhccceeEEehhhhhhcccccccCCCc-CcccHhHHHHHHhCCCceEEEeeccCC
Confidence 33444444444457899999997443 1110 111144666888899999999999943
No 274
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=61.86 E-value=1.2e+02 Score=27.81 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=62.1
Q ss_pred CCCccEEEEeCc-----------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC----CCeEEEecccccc
Q 016133 143 NGDTCAIVYCLE-----------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS----RKQVVVATVAFGM 207 (394)
Q Consensus 143 ~~~~~~IVF~~s-----------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g----~~~iLVaT~~~~~ 207 (394)
.+.+.+||+.|. ...++.|++.|++.|+.+. .+-+++..+-.+.++.|.+. ...++|.. .++.
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sH 83 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSH 83 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCC
Confidence 345567888775 4689999999999999874 57788999988999999763 34555555 6778
Q ss_pred ccCCCCccEEEEecC-CCCHHHHHHHH
Q 016133 208 GIDRKDVRLVCHFNI-PKSMEAFYQES 233 (394)
Q Consensus 208 GiD~p~v~~VI~~~~-p~s~~~y~Qr~ 233 (394)
|. ...|+-.|- +-++...+...
T Consensus 84 G~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 84 GE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred CC----CCeEEEecCCEEEHHHHHHhc
Confidence 84 366766665 55777777666
No 275
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=61.76 E-value=30 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=24.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
.+...+|||||+|.+... ....|.......|+..++.|+++
T Consensus 94 ~~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 456789999999988642 22344444454454445555554
No 276
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=61.50 E-value=14 Score=40.42 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.+..+++||||+|.|..-+ ...|.++.+..|..-+++|..|-...+..
T Consensus 118 ~~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred cCCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 3567899999999997533 45566666666654455555464444333
No 277
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.93 E-value=31 Score=36.27 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
.+...++||||+|.+..- .+..|.+.....|+.-+++|..|-+..+...|.
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 456789999999998742 345565566665654455554565554444433
No 278
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=60.54 E-value=9 Score=41.27 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred CCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCC--CCce-----------EEEEEecccHHHHHHH
Q 016133 194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSK-----------SLLYYGMDDRRRMEFI 260 (394)
Q Consensus 194 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g--~~g~-----------~i~l~~~~d~~~~~~i 260 (394)
...+.|++-.++-.|-|-|+|=.++-.....|..+=.|++||+-|-. +.|. -.++++.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 56789999999999999999999999999999999999999999942 3332 2345556666666655
Q ss_pred HHhc
Q 016133 261 LSKN 264 (394)
Q Consensus 261 ~~~~ 264 (394)
.++.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5443
No 279
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=60.51 E-value=11 Score=30.76 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCccEEEEeC-cHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 144 GDTCAIVYCL-ERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~-s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
+..+++|||. +-..+...+..|+..|+.+..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4568999996 4556777888888889999999999754
No 280
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.49 E-value=86 Score=27.39 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVV 199 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iL 199 (394)
+....|.+..... +.++-++-.+...++.+++.|++. ++.+..+||..++++...+.+.......++|
T Consensus 35 dl~~~l~~~~~~~-~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 35 DLMEELCQRAGKE-KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 4444555444433 235666667778889999999876 6777777999988888888888887766554
No 281
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=60.42 E-value=17 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=30.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
..+++|||.+-..+...+..|...|+. +..+.||++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 457999998877888889999999985 778889874
No 282
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=60.29 E-value=38 Score=39.58 Aligned_cols=71 Identities=8% Similarity=0.071 Sum_probs=53.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh----------------CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc----
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA----------------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA---- 204 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~----------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~---- 204 (394)
+.++|+.+++++-+.++.+.|+. .++.+..+||+.+..+|.+.+ ....+|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHH
Confidence 35788889999999888887752 267889999999999886543 356799999962
Q ss_pred -cc-cc-cCCCCccEEEE
Q 016133 205 -FG-MG-IDRKDVRLVCH 219 (394)
Q Consensus 205 -~~-~G-iD~p~v~~VI~ 219 (394)
+. .+ ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35788999883
No 283
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.27 E-value=23 Score=38.90 Aligned_cols=49 Identities=29% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
.++..++||||||.|. +.....|.+.....|+.-++++..|-+..+...
T Consensus 117 ~gk~KViIIDEAh~LT------~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS------RSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred cCCcEEEEEechHhcC------HHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 3567899999999986 333455555555555443444445544444433
No 284
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.04 E-value=28 Score=37.00 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.++.+++||||+|.++.- ....|.++....|+.-.++|++|-+..+.
T Consensus 116 ~gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTH------SFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCcEEEEEechHhcCHH------HHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 356789999999988742 23445555555554445556666544443
No 285
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=59.32 E-value=33 Score=35.48 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccc-cccCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFG-MGIDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiD~p~v 214 (394)
+..+||.++|++-|.++.+.++.. ++.+..+.||.+..... ..+. ....|+|+|. .+. .++++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~-~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQ-QGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhc-CCCCEEEECHHHHHHHHHcCCccchhe
Confidence 457899999999998888777654 45566677776544332 2233 3478999994 333 36778888
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 88773
No 286
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.86 E-value=91 Score=28.33 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
..+.+.+++...+ .+..|||.+-..+..+...|.+.|+.
T Consensus 163 ~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~~l~~~g~~ 201 (269)
T cd06281 163 GFDATRALLALPD-RPTAIIAGGTQVLVGVLRALREAGLR 201 (269)
T ss_pred HHHHHHHHHcCCC-CCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 3455556665433 34566787777777788888777654
No 287
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=58.77 E-value=2e+02 Score=28.65 Aligned_cols=69 Identities=22% Similarity=0.217 Sum_probs=38.4
Q ss_pred cEEEeCCceecChHHH---HHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 19 RLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~---~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
+.+++|--+....|-+ ..+..+.+... .+++|||||-+.-+|..=|...... -..+..+.++..|+.+.
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~-a~L~VDEAHa~Gv~G~~GrG~~e~~-----g~~~~~vdi~~gTlsKA 243 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKYG-ALLYVDEAHAVGVLGPNGRGLAEHF-----GLEPEEVDIIVGTLGKA 243 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHhC-cEEEEEccccccccCCCCccHHHHh-----CCCCccceEEEEEchhh
Confidence 6777776666555532 23322222222 5899999999887774333322221 12234456677776553
No 288
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=58.45 E-value=8.6 Score=34.85 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=44.8
Q ss_pred HHHHHhcCCCcccEEEeCCceecChH-------HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-
Q 016133 7 IYEDLDSGKPSLRLLYVTPELTATPG-------FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL- 78 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe~v~tp~-------~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~- 78 (394)
+...+....|..+++|++.+.+.+.- -...+.. .....++++||..|.+.... ..-..+..+...+
T Consensus 54 i~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~DlL~iDDi~~l~~~~----~~q~~lf~l~n~~~ 127 (219)
T PF00308_consen 54 IANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKD--RLRSADLLIIDDIQFLAGKQ----RTQEELFHLFNRLI 127 (219)
T ss_dssp HHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHH--HHCTSSEEEEETGGGGTTHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhh--hhhcCCEEEEecchhhcCch----HHHHHHHHHHHHHH
Confidence 34444444456799999887443211 0111111 12358999999999986421 1112333333332
Q ss_pred -CCCCEEEEeecCChhH---HHHHHHHhC
Q 016133 79 -PDVPILALTATAAPKV---QKDVMESLC 103 (394)
Q Consensus 79 -~~~~~l~lSAT~~~~~---~~~i~~~l~ 103 (394)
.+.++|+.|..+|.+. ..++...+.
T Consensus 128 ~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 128 ESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred hhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 2556666565655442 345555553
No 289
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.42 E-value=73 Score=26.87 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=44.4
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCC-----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEec-----cccccc-cCCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGG-----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-----VAFGMG-IDRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g-----~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-----~~~~~G-iD~p~ 213 (394)
..+++|.+++...+.++...+.... .....+++... ....+.+.++...++++| +.+..+ ++...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 4679999999999998888887654 33445555433 334455666666899998 333332 34445
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+.++|
T Consensus 130 ~~~iI 134 (201)
T smart00487 130 VDLVI 134 (201)
T ss_pred CCEEE
Confidence 55555
No 290
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=57.43 E-value=47 Score=33.35 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=48.9
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----ccccc--CC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMGI--DR 211 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~Gi--D~ 211 (394)
+..++|.++|++-|.+++..+.+. .+.+.-+.+.|+... ...+..+...|+|+|++ +..|+ ..
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~ 168 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGVLEYL 168 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhccchhh
Confidence 446899999999999999888763 445666666776654 34667789999999973 55665 33
Q ss_pred CCccEE
Q 016133 212 KDVRLV 217 (394)
Q Consensus 212 p~v~~V 217 (394)
..+.+.
T Consensus 169 ~~l~~L 174 (569)
T KOG0346|consen 169 DSLSFL 174 (569)
T ss_pred hheeeE
Confidence 344443
No 291
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=56.68 E-value=28 Score=27.49 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
...++++||.+-..+...+..|.+.|+......||+.
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 3457999999988888899999999987666667753
No 292
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.27 E-value=31 Score=36.40 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 98 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 98 (394)
.+...+|||||+|.+.. .....|.......++.-++++.+|-+..+...+
T Consensus 117 ~g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred cCCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 35578999999998863 223444444444344445666666555444333
No 293
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=56.05 E-value=56 Score=31.62 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=45.2
Q ss_pred cccEEEeCCc---eecChHHHH---HHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 17 SLRLLYVTPE---LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 17 ~~~il~~tPe---~v~tp~~~~---~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
..++.++.|+ .+....... .+......+..+++|||+||.|..-. -..|-+..+..|..-+++|+++-
T Consensus 73 HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 73 HPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECC
Confidence 4567777885 233222221 22223335678899999999987422 34555556665655566667766
Q ss_pred ChhHHHHHHH
Q 016133 91 APKVQKDVME 100 (394)
Q Consensus 91 ~~~~~~~i~~ 100 (394)
+..+...|..
T Consensus 147 ~~~llpTI~S 156 (325)
T PRK06871 147 SAALLPTIYS 156 (325)
T ss_pred hHhCchHHHh
Confidence 5555544433
No 294
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=55.94 E-value=31 Score=30.60 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=36.8
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
......+..++||+||.=....+| +-+. ..+..+....|...-+.+|..-.|.
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~g--li~~-eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYG--YLDV-EEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCC--CccH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 444456779999999999998888 4443 3454555666766677788875554
No 295
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=55.81 E-value=72 Score=33.66 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred cccEEEeCCceecChHHHHHH----HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 17 SLRLLYVTPELTATPGFMSKL----KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l----~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
..+++.+.|..-..-.-+..+ .........+++||||+|.+.. ..+..|.+.....|..-+++|.+|-..
T Consensus 100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------HHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 356777666532111112222 2222345678999999999864 234455555555554444555555444
Q ss_pred hH
Q 016133 93 KV 94 (394)
Q Consensus 93 ~~ 94 (394)
.+
T Consensus 174 kl 175 (598)
T PRK09111 174 KV 175 (598)
T ss_pred hh
Confidence 33
No 296
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.37 E-value=38 Score=35.59 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 98 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 98 (394)
....+++||||+|.+... ....|.+.....|+.-+++|.+|-+..+...|
T Consensus 117 ~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 456789999999988742 23456556666555445555556554444433
No 297
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=55.27 E-value=64 Score=32.60 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=27.0
Q ss_pred HHHhcCCCcccEEEeCCceecChHHHHHH--------HhhccCCCccEEEEecCCcccc
Q 016133 9 EDLDSGKPSLRLLYVTPELTATPGFMSKL--------KKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 9 ~~l~~g~~~~~il~~tPe~v~tp~~~~~l--------~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
..+....|..+++|++.+.+... +...+ .... ....++|+|||+|.+..
T Consensus 152 ~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 152 NYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcC
Confidence 34444445578999887643211 11111 1111 12478999999998753
No 298
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.11 E-value=72 Score=31.68 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=27.9
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
..+.-.++||||+|.+... ....|.......|+..++.+.+|-...+.
T Consensus 124 ~~~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred hcCCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 3456789999999988642 23344444444444445556555433333
No 299
>PLN03025 replication factor C subunit; Provisional
Probab=55.07 E-value=25 Score=33.76 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
+..++++|||+|.+.... -..|..+....++.-.++++++..+.+...+.
T Consensus 98 ~~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CCeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 347899999999986422 23444455555554456666665554444333
No 300
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=55.03 E-value=36 Score=33.34 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=27.0
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.+...++||||||.+.. .....|.+..+..|...++++.++.+.
T Consensus 139 ~g~~rVviIDeAd~l~~------~aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR------NAANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCH------HHHHHHHHHHhcCCCCceEEEEECChh
Confidence 45688999999998863 223445455555555445555555443
No 301
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.84 E-value=37 Score=29.16 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=35.3
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec-CChhHH
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT-AAPKVQ 95 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT-~~~~~~ 95 (394)
......+..++||+||+=....+|. -+. ..+..+....|...-+.+|.- +|++..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gl--i~~-~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGL--LDV-EEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCC--CCH-HHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 3344467799999999998888873 222 345556666665556666665 444443
No 302
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=54.72 E-value=50 Score=31.37 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=46.0
Q ss_pred HhcCCCcccEEEeCCce--ecChHHHHHHHh----hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEE
Q 016133 11 LDSGKPSLRLLYVTPEL--TATPGFMSKLKK----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84 (394)
Q Consensus 11 l~~g~~~~~il~~tPe~--v~tp~~~~~l~~----~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l 84 (394)
+.+|. ..++.++.|+- +.... ...+.+ ....+..+++|||+||.|..-. -..|-+..+..|..-++
T Consensus 66 i~~~~-HPD~~~i~p~~~~I~idq-IR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A------aNaLLKtLEEPp~~t~~ 137 (290)
T PRK07276 66 IEQGE-FSDVTVIEPQGQVIKTDT-IRELVKNFSQSGYEGKQQVFIIKDADKMHVNA------ANSLLKVIEEPQSEIYI 137 (290)
T ss_pred HhcCC-CCCeeeecCCCCcCCHHH-HHHHHHHHhhCcccCCcEEEEeehhhhcCHHH------HHHHHHHhcCCCCCeEE
Confidence 44444 45788888972 32222 223322 2224567899999999987422 34555555555554456
Q ss_pred EEeecCChhHHHHHHH
Q 016133 85 ALTATAAPKVQKDVME 100 (394)
Q Consensus 85 ~lSAT~~~~~~~~i~~ 100 (394)
+|.+.-+..+...|..
T Consensus 138 iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 138 FLLTNDENKVLPTIKS 153 (290)
T ss_pred EEEECChhhCchHHHH
Confidence 6666555555544443
No 303
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=54.56 E-value=8.3 Score=41.05 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=27.4
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCC
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g 61 (394)
..+++|+++..+............ ...-.++|+||||++.++.
T Consensus 194 ~ad~vv~nh~~~~~~~~~~~~~~~--~p~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 194 NADLVVTNHALLLADVALEESRIL--LPENDVVVFDEAHNLPDIA 236 (654)
T ss_pred hCCEEEEccHHHHhHHHhhhhhcc--CCcccEEEEeccccchHHH
Confidence 468999888876554322221111 2235689999999998754
No 304
>PRK05320 rhodanese superfamily protein; Provisional
Probab=54.23 E-value=24 Score=32.94 Aligned_cols=38 Identities=13% Similarity=0.384 Sum_probs=33.1
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
++.++++||.+=..++..+..|++.|+. +..+.||+..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 5668999999999999999999999995 7888999743
No 305
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=53.30 E-value=11 Score=40.06 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=44.6
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
++|+++|+.++.++.+. . -.+-.||+||||.+..+.. . .....-.+.......||+|+......+
T Consensus 235 ~dVVltTy~il~~~~l~----~----i~w~Riildea~~ikn~~t---q----~~~a~~~L~a~~RWcLtgtPiqn~~~~ 299 (674)
T KOG1001|consen 235 YDVVLTTYDILKNSPLV----K----IKWLRIVLDEAHTIKNKDT---Q----IFKAVCQLDAKYRWCLTGTPIQNNLDE 299 (674)
T ss_pred CceEEeeHHHhhccccc----c----eeEEEEEeccccccCCcch---H----hhhhheeeccceeeeecCChhhhhHHH
Confidence 56777777777642211 1 1245699999999987541 1 211222223455678899999888887
Q ss_pred HHHHhCC
Q 016133 98 VMESLCL 104 (394)
Q Consensus 98 i~~~l~~ 104 (394)
+...++.
T Consensus 300 lysl~~f 306 (674)
T KOG1001|consen 300 LYSLFKF 306 (674)
T ss_pred HHHHHHH
Confidence 7766543
No 306
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=53.26 E-value=37 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
+..+++|+|.+-..+..++..|...|+ ++..+.||+.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 346899999998888888999998887 6889999963
No 307
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=53.26 E-value=40 Score=34.17 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=24.6
Q ss_pred ccEEEeCCceecChHHHHHHHh-----hc-cCCCccEEEEecCCccccC
Q 016133 18 LRLLYVTPELTATPGFMSKLKK-----IH-SRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~-----~~-~~~~l~~iVvDEaH~l~~~ 60 (394)
.+++|++.+.+... +...+.. .. .....++++|||+|.+..+
T Consensus 170 ~~v~yi~~~~f~~~-~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 170 GKILYVRSELFTEH-LVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK 217 (445)
T ss_pred CCEEEeeHHHHHHH-HHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC
Confidence 67888887744321 1111110 00 1345889999999998653
No 308
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=70 Score=33.12 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=40.7
Q ss_pred EEEeCCc-eecChH--HHHHHHhhc---cCCCccEEEEecCCccccCCC---CCHHHHH-HHHHHHHhCC--CCCEEEEe
Q 016133 20 LLYVTPE-LTATPG--FMSKLKKIH---SRGLLNLVAIDEAHCISSWGH---DFRPSYR-KLSSLRNYLP--DVPILALT 87 (394)
Q Consensus 20 il~~tPe-~v~tp~--~~~~l~~~~---~~~~l~~iVvDEaH~l~~~g~---~fr~~~~-~l~~l~~~~~--~~~~l~lS 87 (394)
|-+++|| +++-.. ....+.+.. -.+.+++||||+...+.+|.. -|..... .|..+....| +.+++.+.
T Consensus 567 vKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~ 646 (744)
T KOG0741|consen 567 VKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFG 646 (744)
T ss_pred EEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEe
Confidence 4457998 665332 222232222 245699999999999999853 3333322 2333444444 34555555
Q ss_pred ecCChhH
Q 016133 88 ATAAPKV 94 (394)
Q Consensus 88 AT~~~~~ 94 (394)
-|-...+
T Consensus 647 TTS~~~v 653 (744)
T KOG0741|consen 647 TTSRREV 653 (744)
T ss_pred cccHHHH
Confidence 5544443
No 309
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=52.95 E-value=52 Score=35.88 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCC-HHHHHHHHHHHhcCCCeEEEecc
Q 016133 140 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLN-DKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 140 l~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~-~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+....+..+.|.++|..-|.+.++.+.. .|+++..+.|+++ +.+|.... ..+|+++|.
T Consensus 114 l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 114 LNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 3444566899999999888777776654 5999999999999 77776442 378999994
No 310
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=52.02 E-value=45 Score=26.12 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
...++++||.+-..+...+..|.+.|+.....-||+
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 345789999998888899999999998755445765
No 311
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=51.60 E-value=1.8e+02 Score=30.21 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=64.6
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCc------eEEecCCCCHHHHHHHHHHHh----cCCCeEE--EeccccccccCCCCc
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGIS------CAAYHAGLNDKARSSVLDDWI----SSRKQVV--VATVAFGMGIDRKDV 214 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~------~~~~h~~l~~~~R~~~~~~f~----~g~~~iL--VaT~~~~~GiD~p~v 214 (394)
-+..|..+---.+.++......|+- -..+-+.-+..+-.-.++..+ +|.-.|| ||-.-...|||+.+-
T Consensus 532 G~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hh 611 (755)
T KOG1131|consen 532 GIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHH 611 (755)
T ss_pred ceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccc
Confidence 3678888877777777666655441 122333333333344444443 4544455 667788999999887
Q ss_pred c--EEEEecCCCCH------------------------------HHHHHHHhhcccCCCCceEEEEEec
Q 016133 215 R--LVCHFNIPKSM------------------------------EAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 215 ~--~VI~~~~p~s~------------------------------~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
. .||++++|.-. .--.|-.||+-|. +.-..+.+|..
T Consensus 612 yGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aD 679 (755)
T KOG1131|consen 612 YGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFAD 679 (755)
T ss_pred cCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeee
Confidence 6 89999999521 1124788999884 45566666654
No 312
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=51.60 E-value=68 Score=31.97 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=31.8
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
-.+|++||+|++.+|. +.+..+....+. -+++|++.+.-....+...|..+
T Consensus 95 ~~yifLDEIq~v~~W~-------~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR 145 (398)
T COG1373 95 KSYIFLDEIQNVPDWE-------RALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGR 145 (398)
T ss_pred CceEEEecccCchhHH-------HHHHHHHccccc--eEEEECCchhhhccchhhhcCCC
Confidence 3699999999999886 456666665444 34555554444444444544433
No 313
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=51.30 E-value=42 Score=35.09 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.+.-.++||||+|.+..- .+..|.......|..-++.|.+|-+..+..
T Consensus 117 ~~~~kViIIDE~~~Lt~~------a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG------AFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred cCCeEEEEEECcccCCHH------HHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 456789999999988642 234444444444444455555554444333
No 314
>PRK08727 hypothetical protein; Validated
Probab=51.18 E-value=80 Score=28.72 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=14.3
Q ss_pred CCccEEEEecCCccccCC
Q 016133 44 GLLNLVAIDEAHCISSWG 61 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g 61 (394)
...++|||||+|.+..+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR 109 (233)
T ss_pred hcCCEEEEeCcccccCCh
Confidence 357899999999887544
No 315
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.10 E-value=1.5e+02 Score=25.55 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceEE-ecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAA-YHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~-~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
+.+..+.+..... +.++-++-.+.+.++.+++.|++. ++.+.. +|+-+...+...+++.......++|+
T Consensus 33 dl~~~ll~~~~~~-~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQK-GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4455555555443 446777778888889999899876 677665 77888877777788888877766553
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=50.96 E-value=36 Score=29.68 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=35.7
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+....+..++||+||+=....+| +-+. ..+..+....|...-+.+|..-.|.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~g--li~~-~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYG--YLDV-EEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCC--CcCH-HHHHHHHHhCCCCCEEEEECCCCCH
Confidence 344445779999999999888888 3332 3454556666666667777775544
No 317
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=50.94 E-value=94 Score=34.50 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=42.7
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 146 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
..++|.++|+.-|.+.++.+.. .|+++..+.||++..++...+ ..+|+|+|+-
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 3578889999999999888875 378899999999988876443 3789999974
No 318
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=50.65 E-value=69 Score=31.10 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=47.2
Q ss_pred cccEEEeCCce----ecChHHHHHH----HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEee
Q 016133 17 SLRLLYVTPEL----TATPGFMSKL----KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 88 (394)
Q Consensus 17 ~~~il~~tPe~----v~tp~~~~~l----~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSA 88 (394)
.-++.+++||. +.... ...+ ......+..+++|||+||.|..- .-..|-+..+..|..-+++|.+
T Consensus 73 HPD~~~i~p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDA------AANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred CCCEEEEecccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHH------HHHHHHHHhcCCCCCeEEEEEE
Confidence 45788888883 22222 2222 22333567889999999998642 2355655666666666677777
Q ss_pred cCChhHHHHHHH
Q 016133 89 TAAPKVQKDVME 100 (394)
Q Consensus 89 T~~~~~~~~i~~ 100 (394)
.-+..+...|..
T Consensus 146 ~~~~~lLpTIrS 157 (334)
T PRK07993 146 REPARLLATLRS 157 (334)
T ss_pred CChhhChHHHHh
Confidence 766666555544
No 319
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=50.10 E-value=84 Score=26.60 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.2
Q ss_pred cEEEEeCc-------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 016133 147 CAIVYCLE-------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 191 (394)
Q Consensus 147 ~~IVF~~s-------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 191 (394)
+++||+.| -..|..+...|+..++....+.=.+..+.++++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 46788876 7889999999999999988888888888888766554
No 320
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=50.07 E-value=17 Score=40.26 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC
Q 016133 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239 (394)
Q Consensus 195 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 239 (394)
.++.|++-+++..|-|-|+|-.++-+.-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999999999999999999984
No 321
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=49.90 E-value=43 Score=33.86 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=26.4
Q ss_pred HHHhcCCCcccEEEeCCceecChHHHHHHHh-----h-ccCCCccEEEEecCCccc
Q 016133 9 EDLDSGKPSLRLLYVTPELTATPGFMSKLKK-----I-HSRGLLNLVAIDEAHCIS 58 (394)
Q Consensus 9 ~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~-----~-~~~~~l~~iVvDEaH~l~ 58 (394)
..+....|..+++|++.+.+.. .+...+.. . ......++|+|||+|.+.
T Consensus 170 ~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 170 NYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLA 224 (450)
T ss_pred HHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhc
Confidence 3333333457888888764321 11111110 0 012358899999999875
No 322
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=49.70 E-value=48 Score=32.97 Aligned_cols=51 Identities=18% Similarity=0.415 Sum_probs=27.0
Q ss_pred HHHHhcCCCcccEEEeCCceecChHHHHHHHh-----h-ccCCCccEEEEecCCcccc
Q 016133 8 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-----I-HSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 8 ~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~-----~-~~~~~l~~iVvDEaH~l~~ 59 (394)
...+....+..+++|++.+.+... +...+.. . ......++|+|||+|.+..
T Consensus 157 ~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 157 GNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence 334443334578899887643211 1111100 0 0113478999999998753
No 323
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=49.68 E-value=2.2e+02 Score=30.45 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CCc-eEEe-------------------------cCCCCHHHH
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GIS-CAAY-------------------------HAGLNDKAR 184 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~~-~~~~-------------------------h~~l~~~~R 184 (394)
+.-.+..+++.. +.++||.+++...|.+++..|+.. +-+ |..| .+.--...|
T Consensus 42 kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R 120 (655)
T TIGR00631 42 KTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLR 120 (655)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHH
Confidence 333444555543 357999999999999999999775 333 4444 011113457
Q ss_pred HHHHHHHhcCCCeEEEeccccccccCCCC----ccEEEEecCCCCHHHHHHHHhhcc
Q 016133 185 SSVLDDWISSRKQVVVATVAFGMGIDRKD----VRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 185 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p~----v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
..++..+.+++-.|+|||-..-.|+=-|+ ..+.+..+-..+...+..+.-..|
T Consensus 121 ~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~~g 177 (655)
T TIGR00631 121 HSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVELQ 177 (655)
T ss_pred HHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHHcC
Confidence 88888888887789999876667764443 456667777777777776654444
No 324
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=49.39 E-value=23 Score=37.57 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=32.3
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 102 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l 102 (394)
.++++|||||+.+.. ..+..+..+.... +.++|.+|.|-+.......+..|
T Consensus 352 tfDLLIVDEAqFIk~------~al~~ilp~l~~~-n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 352 DFNLLFVDEANFIRP------DAVQTIMGFLNQT-NCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred cccEEEEechhhCCH------HHHHHHHHHHhcc-CccEEEEecCCCCccchHHHHhh
Confidence 489999999998764 2233332222222 88999999997765544333333
No 325
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=49.37 E-value=1.6e+02 Score=25.42 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceE-EecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCA-AYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
+.+..+....... +.++-++-.+.+.++.+++.|++. ++.+. .+|+-+++.+...+++.......++|+
T Consensus 35 dl~~~l~~~~~~~-~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 35 DLFPDLLRRAEQR-GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4455555544443 346666677888889999999887 66766 455667888888999988877766553
No 326
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=49.06 E-value=48 Score=29.06 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=36.0
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+....+..++||+||.=...++| +-+. ..+..+....|.-.-+.+|.--.|+
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~g--li~~-eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFG--LIPE-TEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCC--CccH-HHHHHHHHhCCCCCEEEEECCCCCH
Confidence 344446779999999999888888 4433 4455566666766667777764444
No 327
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=49.00 E-value=40 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=27.9
Q ss_pred CCCccEEEEeCc---HHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 143 NGDTCAIVYCLE---RTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s---~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
.+..++||||.+ -..+-.++-.|+..|+. +..|.|+++
T Consensus 93 ~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 93 DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 346689999986 34556667778878865 778999874
No 328
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=48.94 E-value=10 Score=40.17 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=25.0
Q ss_pred cccEEEeCCceecChHHHHHHHhh-ccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~-~~~~~l~~iVvDEaH~l~~ 59 (394)
+.+|++++..++.. .+... .-+...+++||||||.+.+
T Consensus 182 ~AdivItNHalL~~-----~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 182 RCRILFCTHAMLGL-----AFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred cCCEEEECHHHHHH-----HhhhhcCCCCCCCEEEEeCCcchHH
Confidence 46888888776653 12111 1234478999999999874
No 329
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.75 E-value=59 Score=34.87 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=28.3
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.++.+++||||+|.+.. ..+..|.+.....|+.-.++|+.|-+..+..
T Consensus 117 ~gk~KVIIIDEad~Ls~------~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK------SAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred hCCcEEEEEECccccCH------HHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 35678999999998763 2234554555555544445555564444433
No 330
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=48.74 E-value=25 Score=28.19 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=31.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
+..++||||++-..+...+..|...|+. +..+.+|+..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4567999999988888999999999986 6668888753
No 331
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=48.69 E-value=1e+02 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=33.2
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 100 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 100 (394)
.+..+++|||+||.|..- .-..|-+..+..|+.-+++|+++-+..+...|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA------AANALLKTLEEPPPGTVFLLVSARIDRLLPTILS 181 (342)
T ss_pred cCCceEEEEechhhcCHH------HHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh
Confidence 456889999999998642 2345555556656555666666665555544443
No 332
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=48.65 E-value=75 Score=34.80 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=46.2
Q ss_pred HHHHHhCCCccEEEEeCcHHHHHHHHHHHH----hCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 137 CSVLKANGDTCAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 137 ~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~----~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
..++....+..+-|.++|..-|.+.++.+. ..|+++..+.|+++..+|..... .+|+++|..
T Consensus 114 pa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 114 PAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 333344445567788999877777766665 45999999999999999887753 789999963
No 333
>PLN02160 thiosulfate sulfurtransferase
Probab=48.48 E-value=26 Score=29.09 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
+..++|+||.+=..+...+..|.+.|+. +..|.||+..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4568999999999999999999999985 7778888643
No 334
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.35 E-value=36 Score=33.34 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
+...++||||+|.+.... ...+.......|+.-.+.+++|-
T Consensus 118 ~~~kviIIDEa~~l~~~a------~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS------FNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHHH------HHHHHHHHhcCCCCeEEEEEcCC
Confidence 456799999999886422 23343344444443344555453
No 335
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=48.02 E-value=51 Score=31.82 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=32.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 100 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 100 (394)
.+..+++|||+||.|..-. -..|-+..+..|..-+++|.+.-+..+...|..
T Consensus 111 ~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAA------CNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred cCCcEEEEeccHhhhCHHH------HHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 4567899999999986422 345555666666555566666655555544443
No 336
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=47.99 E-value=12 Score=33.30 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=23.5
Q ss_pred HHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccc
Q 016133 7 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 58 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~ 58 (394)
+...+... .+++++|+..+..+.+. .+ ...+++||||||=.+.
T Consensus 163 ~~~~~l~~---~~vi~~T~~~~~~~~~~-~~-----~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 163 LRRFILKE---ADVIFTTLSSAASPFLS-NF-----KEKFDVVIVDEASQIT 205 (236)
T ss_dssp HHHHHHHT----SEEEEETCGGG-CCGT-T----------SEEEETTGGGS-
T ss_pred hhhhhccc---ccccccccccchhhHhh-hh-----cccCCEEEEeCCCCcc
Confidence 33444444 57999998866433211 11 0158999999998765
No 337
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=47.94 E-value=59 Score=33.80 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+...++||||||.+.. .....|.......|+.-.++|++|-+..
T Consensus 115 ~~~~KVvIIDEad~Lt~------~A~NALLK~LEEpp~~t~FIL~ttd~~k 159 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK------EAFNALLKTLEEPPSYVKFILATTDPLK 159 (535)
T ss_pred cCCeEEEEEECcccCCH------HHHHHHHHHHhhcCCceEEEEEECChhh
Confidence 35678999999998864 2334555555555544445555554333
No 338
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=47.90 E-value=70 Score=30.85 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=48.1
Q ss_pred HhcCCCcccEEEeCCce----ecChHHHHHHH----hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 11 LDSGKPSLRLLYVTPEL----TATPGFMSKLK----KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 11 l~~g~~~~~il~~tPe~----v~tp~~~~~l~----~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
+.+|. ..++.++.|+. +.... ...+. .....+..+++|||+||.|..- .-..|-+..+..|..-
T Consensus 68 ~~~g~-HPD~~~i~p~~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t 139 (319)
T PRK06090 68 MQSGN-HPDLHVIKPEKEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNES------ASNALLKTLEEPAPNC 139 (319)
T ss_pred HHcCC-CCCEEEEecCcCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHH------HHHHHHHHhcCCCCCe
Confidence 33443 45788888873 32222 22222 2223466889999999998642 2345655666666656
Q ss_pred EEEEeecCChhHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVME 100 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~ 100 (394)
+++|.++-+..+...|..
T Consensus 140 ~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred EEEEEECChhhChHHHHh
Confidence 677777766666555444
No 339
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=47.81 E-value=57 Score=33.67 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
.+.-.++||||+|.++. ..+..|.......|..-++++..|
T Consensus 126 ~~~~KVvIIDEa~~Ls~------~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK------GAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred cCCcEEEEEEChhhcCH------HHHHHHHHHHhhcCCCEEEEEEeC
Confidence 45578899999998864 223444444444443333444434
No 340
>PRK02362 ski2-like helicase; Provisional
Probab=47.71 E-value=60 Score=35.18 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDV 214 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 214 (394)
.++++|+.+++++-|.+.+..++.. |+.+..++|+.+.... + -+..+|+|||. .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~------~-l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE------W-LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc------c-cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 3568999999999999999988865 7889999998765431 1 24578999994 22222 224678
Q ss_pred cEEE
Q 016133 215 RLVC 218 (394)
Q Consensus 215 ~~VI 218 (394)
++||
T Consensus 139 ~lvV 142 (737)
T PRK02362 139 TCVV 142 (737)
T ss_pred CEEE
Confidence 8877
No 341
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=47.70 E-value=37 Score=31.92 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 134 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 134 ~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+.|..++.. .+..++|+||++=..+-.++..|...|+. +..|+|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 445555543 24568999999988888899999988985 889999864
No 342
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=47.58 E-value=21 Score=36.75 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=16.5
Q ss_pred ccCCCccEEEEecCCccccCC
Q 016133 41 HSRGLLNLVAIDEAHCISSWG 61 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g 61 (394)
...++.++.||||+|.++.-+
T Consensus 115 P~~~ryKVyiIDEvHMLS~~a 135 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQA 135 (515)
T ss_pred CccccceEEEEecHHhhhHHH
Confidence 345778999999999988533
No 343
>PTZ00424 helicase 45; Provisional
Probab=47.55 E-value=1e+02 Score=30.21 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
.+.++||.+++++-+.++.+.+... +..+....|+....+. .+.+.++ .+|+|+|.-. ...+.+.+
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~ 170 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDD 170 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCccccc
Confidence 3457999999999999988887664 3456667777664432 2334443 6899999621 22456778
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 171 i~lvVi 176 (401)
T PTZ00424 171 LKLFIL 176 (401)
T ss_pred ccEEEE
Confidence 888773
No 344
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.45 E-value=61 Score=33.28 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=25.6
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
.+.-.++||||||.+.. .....|.......|...++++.+|-
T Consensus 117 ~~~~KVvIIDEad~Lt~------~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK------EAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred cCCeeEEEEEChhhcCH------HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45567999999998763 2234454445554545555555553
No 345
>PRK00254 ski2-like helicase; Provisional
Probab=47.17 E-value=41 Score=36.32 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=48.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~ 215 (394)
++++|+-++++.-+.+.++.+.. .|+.+..++|+.+...+ + .++.+|+|+|. .+..+ ..+.+++
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 45788889999999999987764 47889999999875422 1 25678999994 22222 2356788
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 141 lvV 143 (720)
T PRK00254 141 LVV 143 (720)
T ss_pred EEE
Confidence 877
No 346
>PRK07413 hypothetical protein; Validated
Probab=46.98 E-value=1.5e+02 Score=29.37 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=35.8
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
......+..++||+||.-...++| +-+. ..+..+....|...-+.+|.--.|.
T Consensus 118 ~~~i~sg~ydlvILDEi~~Al~~g--ll~~-eevl~~L~~rP~~~evVLTGR~ap~ 170 (382)
T PRK07413 118 KGAIASGLYSVVVLDELNPVLDLG--LLPV-DEVVNTLKSRPEGLEIIITGRAAPQ 170 (382)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCC--CccH-HHHHHHHHhCCCCCEEEEeCCCCCH
Confidence 334446779999999999988888 4333 3444555666665667777765444
No 347
>PRK08084 DNA replication initiation factor; Provisional
Probab=46.60 E-value=1e+02 Score=28.13 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=11.4
Q ss_pred ccEEEEecCCccc
Q 016133 46 LNLVAIDEAHCIS 58 (394)
Q Consensus 46 l~~iVvDEaH~l~ 58 (394)
.++|+|||+|.+.
T Consensus 98 ~dlliiDdi~~~~ 110 (235)
T PRK08084 98 LSLVCIDNIECIA 110 (235)
T ss_pred CCEEEEeChhhhc
Confidence 5799999999875
No 348
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=46.54 E-value=65 Score=31.67 Aligned_cols=151 Identities=9% Similarity=0.155 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhCCCccEEEEeC---------cHHHHHHHHHHHHhCCCceE--EecCCCCHHH-HHHHHHHHhcCCCeEE
Q 016133 132 AYADLCSVLKANGDTCAIVYCL---------ERTTCDELSAYLSAGGISCA--AYHAGLNDKA-RSSVLDDWISSRKQVV 199 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~---------s~~~~~~l~~~L~~~g~~~~--~~h~~l~~~~-R~~~~~~f~~g~~~iL 199 (394)
.++.|.+.+.... .+..|.|| |+++...+++.-.+.|+.+. .+|+.+--.. +-........+-....
T Consensus 146 D~~~LE~~~~~~~-vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~ 224 (388)
T COG1168 146 DFDALEKAFVDER-VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNS 224 (388)
T ss_pred cHHHHHHHHhcCC-ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcce
Confidence 3566666665432 36889997 67888888888888888765 4888775433 2222222222223445
Q ss_pred EeccccccccCCCCccEE-EEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchhHhh
Q 016133 200 VATVAFGMGIDRKDVRLV-CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 278 (394)
Q Consensus 200 VaT~~~~~GiD~p~v~~V-I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (394)
++..+.+.+.|++++..- +...-+..-..|..|.-|.++.|-...+++ .. +..
T Consensus 225 it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~-------------A~-------------~aA 278 (388)
T COG1168 225 ITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGII-------------AT-------------EAA 278 (388)
T ss_pred EEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHH-------------HH-------------HHH
Confidence 555667788898887652 222333444777777777776653221111 00 000
Q ss_pred hhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCC
Q 016133 279 SKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP 312 (394)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~ 312 (394)
-+....=|..+++|.+. -|.++.++|.+..|
T Consensus 279 Y~~G~~WLd~L~~yl~~---N~~~~~~~l~~~~P 309 (388)
T COG1168 279 YNQGEPWLDELLEYLKD---NRDYVADFLNKHLP 309 (388)
T ss_pred HHhchHHHHHHHHHHHH---HHHHHHHHHHhhCC
Confidence 11122345678888887 67777777777653
No 349
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.24 E-value=1.1e+02 Score=21.88 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=38.0
Q ss_pred cEEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe
Q 016133 147 CAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201 (394)
Q Consensus 147 ~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 201 (394)
++.||. ++...|..+...|.+.|++...++=...+..+.++.+.-..+.+++++-
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 466665 4578899999999999999888877666665665554433445555543
No 350
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.17 E-value=36 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.6
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
.+..++||||.+-..+..++..|...|+ .+..+-||+.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4566899999998899999999999975 4667777763
No 351
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.41 E-value=67 Score=33.47 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=26.3
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
..+...++||||||.+..- ....|.......|+.-+++|..|-
T Consensus 116 ~~g~~kViIIDEa~~ls~~------a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSKQ------SFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred hcCCcEEEEEechhhccHH------HHHHHHHHHhcCCCCceEEEEECC
Confidence 3456789999999998642 234455555555544444444454
No 352
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=45.07 E-value=1.1e+02 Score=21.69 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=36.6
Q ss_pred EEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEE
Q 016133 148 AIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVV 200 (394)
Q Consensus 148 ~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~iLV 200 (394)
+.||. ++...|..+...|.+.++....+.-...++.+.+..+..... .+++|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45665 566788999999999999988888877766666555444322 344443
No 353
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=44.94 E-value=69 Score=35.47 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred cEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 147 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
=+||.|+|++.+.+|.+.+++ .++.+...+|+....+ -+...+.| ..|+|||.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~---qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ---QIAELKRG-AEIVVCTP 496 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH---HHHHHhcC-CceEEecc
Confidence 468889999999999888765 3888999999876654 45667788 88999994
No 354
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.93 E-value=42 Score=35.56 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=32.4
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
..+.-.++||||||.+... ....|..+....|..-+++|++|-...+..
T Consensus 118 ~~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred ccCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 3456789999999998642 234565666666666667777775444443
No 355
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=44.74 E-value=47 Score=37.61 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=41.3
Q ss_pred cEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 016133 19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 98 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 98 (394)
+|++++-+.+-.. ...+.+ ..+.|+|+||-|.+-.-. .++.+....+..-..+.||+|+-..-..++
T Consensus 1080 ~iiVtSYDv~RnD--~d~l~~----~~wNYcVLDEGHVikN~k-------tkl~kavkqL~a~hRLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1080 NIIVTSYDVVRND--VDYLIK----IDWNYCVLDEGHVIKNSK-------TKLTKAVKQLRANHRLILSGTPIQNNVLEL 1146 (1549)
T ss_pred ceEEeeHHHHHHH--HHHHHh----cccceEEecCcceecchH-------HHHHHHHHHHhhcceEEeeCCCcccCHHHH
Confidence 5777666654211 111222 238899999999875321 233333333344568899999876655555
Q ss_pred HHHh
Q 016133 99 MESL 102 (394)
Q Consensus 99 ~~~l 102 (394)
...+
T Consensus 1147 WSLF 1150 (1549)
T KOG0392|consen 1147 WSLF 1150 (1549)
T ss_pred HHHH
Confidence 5544
No 356
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=44.70 E-value=1.7e+02 Score=28.95 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhCCCc-cEEEEe----CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc
Q 016133 131 DAYADLCSVLKANGDT-CAIVYC----LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~-~~IVF~----~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~ 205 (394)
..+....++.+..+.+ -.|+|. +|...++.+++-|.+.|+.+..++-... ++.++++.....+ .++|+++..
T Consensus 232 ~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI~~~i~~a~-~~vvGsPT~ 308 (388)
T COG0426 232 EIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA--DPSEIVEEILDAK-GLVVGSPTI 308 (388)
T ss_pred HHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC--CHHHHHHHHhhcc-eEEEecCcc
Confidence 3445555555554444 456665 6889999999999999999888776544 5666776665443 588888887
Q ss_pred ccccC
Q 016133 206 GMGID 210 (394)
Q Consensus 206 ~~GiD 210 (394)
..++-
T Consensus 309 ~~~~~ 313 (388)
T COG0426 309 NGGAH 313 (388)
T ss_pred cCCCC
Confidence 76654
No 357
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=44.55 E-value=24 Score=36.45 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=40.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+--+||..+|++-|-++.+.|++. ++++..+-||..-+ .+.-+-..++|||||+
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 335799999999999999999875 45666777776533 3333446789999995
No 358
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.44 E-value=63 Score=33.52 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
.++.+++||||+|.+..- ....|.+.....|+.-+++|.+|-+
T Consensus 117 ~~~~kVvIIDEad~ls~~------a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS------AFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred cCCceEEEEcCcccCCHH------HHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 456789999999988742 2344544445544333344444533
No 359
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=44.35 E-value=25 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCce----EEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 159 DELSAYLSAGGISC----AAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 159 ~~l~~~L~~~g~~~----~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
.-.+++|++.|+.+ ...+.+-...-+..+.+.+++|+++++|.|..
T Consensus 20 ~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 20 EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 34577888999983 33333323333457899999999888877753
No 360
>PRK01415 hypothetical protein; Validated
Probab=44.28 E-value=37 Score=31.48 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
.++.++++||.+=..|+..+..|.+.|+. +..+.||+..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 45668999999999999999999999996 7788998744
No 361
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.11 E-value=17 Score=39.13 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=25.5
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
..+|+++.=..+..|.....+.. ...+ .+|||||||.+.+
T Consensus 195 ~advIi~pYnyl~dp~~r~~~~~--~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 195 FANIVLLPYQYLLDPKIRSAVSI--ELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred cCCEEEechHHhcCHHHHHHhhc--cccc-CEEEEECccchHH
Confidence 45777777666666665443321 1122 6899999998865
No 362
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=44.07 E-value=1.5e+02 Score=28.44 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=32.6
Q ss_pred ccEEEeCCceecChH----HHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 18 LRLLYVTPELTATPG----FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 18 ~~il~~tPe~v~tp~----~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
.+++...|....... ....+......+.-.+|||||||.+.. .....+.......|..-++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 86 LDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------SAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred CCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------HHHHHHHHHHhCCccceeEEEEeC
Confidence 566766665222222 122222222334567999999998753 223344344444444334445544
No 363
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=44.01 E-value=46 Score=28.53 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCCccEEEEeCcHH-HHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 143 NGDTCAIVYCLERT-TCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 143 ~~~~~~IVF~~s~~-~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
.++.++|+||.+-. .+...+..|...|+. +..|.||+..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 35678999999753 566788888999986 7778998743
No 364
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=43.96 E-value=1.8e+02 Score=26.09 Aligned_cols=78 Identities=9% Similarity=-0.018 Sum_probs=43.3
Q ss_pred cEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 016133 19 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 98 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i 98 (394)
++.+..|+-+.-...........-...-.-+|||+||.+... ....|-++....|..-+++|.+|.+..+...|
T Consensus 28 ~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~iI~~a~~l~~~------A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI 101 (206)
T PRK08485 28 NLRFFIKEEFKIEDAKEVIAEAYIAESEEKIIVIAAPSYGIE------AQNALLKILEEPPKNICFIIVAKSKNLLLPTI 101 (206)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhCCCCcEEEEEchHhhCHH------HHHHHHHHhcCCCCCeEEEEEeCChHhCchHH
Confidence 566667775554443333333222222344678999988642 23455555666555556666666666665555
Q ss_pred HHHh
Q 016133 99 MESL 102 (394)
Q Consensus 99 ~~~l 102 (394)
..+.
T Consensus 102 ~SRc 105 (206)
T PRK08485 102 RSRL 105 (206)
T ss_pred Hhhh
Confidence 5443
No 365
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.45 E-value=52 Score=33.60 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=50.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHH-HHHHHHHHhcCCCeEEEeccc-------cccccCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKA-RSSVLDDWISSRKQVVVATVA-------FGMGIDRK 212 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~-R~~~~~~f~~g~~~iLVaT~~-------~~~GiD~p 212 (394)
.-+++|.++++.-+-+++..|... |..|....|.-+-+. -.+....-....++|||+|+. -..|+|+.
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk 294 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLK 294 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchh
Confidence 347899999999999999999865 555555555443322 111111122335699999963 26799999
Q ss_pred CccEEEE
Q 016133 213 DVRLVCH 219 (394)
Q Consensus 213 ~v~~VI~ 219 (394)
+.++.|.
T Consensus 295 ~LrfLVI 301 (620)
T KOG0350|consen 295 HLRFLVI 301 (620)
T ss_pred hceEEEe
Confidence 9998774
No 366
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=43.38 E-value=92 Score=25.61 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc----
Q 016133 134 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI---- 209 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi---- 209 (394)
..+...+...+-..+.|+-+|.+.++.+++.+....+.+..+.. +. ..+ .+.+|+|+|...++-+
T Consensus 25 r~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-~~-----~~~-----~~~DivI~aT~~~~~~i~~~ 93 (135)
T PF01488_consen 25 RAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-LE-----EAL-----QEADIVINATPSGMPIITEE 93 (135)
T ss_dssp HHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-HC-----HHH-----HTESEEEE-SSTTSTSSTHH
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-HH-----HHH-----hhCCeEEEecCCCCcccCHH
Confidence 34444455555556888888999999999988444444444322 11 111 2467888776666543
Q ss_pred CCCCc----cEEEEecCCCCHHHH
Q 016133 210 DRKDV----RLVCHFNIPKSMEAF 229 (394)
Q Consensus 210 D~p~v----~~VI~~~~p~s~~~y 229 (394)
.++.. ++|+....|.+++.-
T Consensus 94 ~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 94 MLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HHTTTCHHCSEEEES-SS-SB-TT
T ss_pred HHHHHHhhhhceeccccCCCCChh
Confidence 23333 588899888876543
No 367
>PRK06893 DNA replication initiation factor; Validated
Probab=43.20 E-value=24 Score=32.12 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQ 95 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~~ 95 (394)
...++|+|||+|.+..... +. ..+..+.... .+.+++++|++.++...
T Consensus 90 ~~~dlLilDDi~~~~~~~~-~~---~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEE-WE---LAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred ccCCEEEEeChhhhcCChH-HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 3578999999998753210 11 1222222222 24567788888777654
No 368
>PRK04296 thymidine kinase; Provisional
Probab=43.00 E-value=51 Score=28.95 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.2
Q ss_pred CCCccEEEEecCCcc
Q 016133 43 RGLLNLVAIDEAHCI 57 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l 57 (394)
.+..++|||||+|.+
T Consensus 76 ~~~~dvviIDEaq~l 90 (190)
T PRK04296 76 GEKIDCVLIDEAQFL 90 (190)
T ss_pred CCCCCEEEEEccccC
Confidence 346899999999865
No 369
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=42.93 E-value=54 Score=28.58 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=31.2
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+....+..++||+||+=....+| +-+. ..+..+....|...-+.||.--.+.
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~g--ll~~-~~v~~~l~~rp~~~evVlTGR~~~~ 141 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYG--LLSE-EEVLDLLENRPESLEVVLTGRNAPE 141 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTT--SS-H-HHHHHHHHTS-TT-EEEEE-SS--H
T ss_pred HHHHhCCCCCEEEEcchHHHhHCC--CccH-HHHHHHHHcCCCCeEEEEECCCCCH
Confidence 444556789999999999888887 4333 4455566666666667777765444
No 370
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=42.38 E-value=87 Score=26.03 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCC
Q 016133 134 ADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 211 (394)
Q Consensus 134 ~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~ 211 (394)
..+..++.+ ..+.+++|+|.+.+.++.+-+.|-...-....-|+-.... .....+|+++++.-. -..
T Consensus 16 ~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~~ 84 (137)
T PF04364_consen 16 RFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NPN 84 (137)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS------
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CCC
Confidence 444444433 2466899999999999999999987755555555543221 112357999987643 112
Q ss_pred CCccEEEEecCC
Q 016133 212 KDVRLVCHFNIP 223 (394)
Q Consensus 212 p~v~~VI~~~~p 223 (394)
+.-+++||.+..
T Consensus 85 ~~~~vLinL~~~ 96 (137)
T PF04364_consen 85 NHADVLINLSGE 96 (137)
T ss_dssp S--SEEEE--SS
T ss_pred CCCCEEEECCCC
Confidence 235788888743
No 371
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=41.45 E-value=26 Score=27.11 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=31.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceE-EecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~ 180 (394)
...+++|||.+=......+..|++.|+... .+.||+.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 356899999999999999999999998876 6777754
No 372
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=41.44 E-value=34 Score=26.76 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 3557899999888888889999999986 777888874
No 373
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.02 E-value=56 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=22.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
+...++||||+|.+.. .....|.......|+.-++.+++|
T Consensus 116 ~~~kVvIIDE~h~Lt~------~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 116 GKYKVYIIDEVHMLTK------EAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CCeEEEEEEChHHhHH------HHHHHHHHHHHhCCCcEEEEEEeC
Confidence 4567999999998753 223344444444444444445555
No 374
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=40.98 E-value=2.2e+02 Score=30.37 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CCc-eEEe--------------------cCC--CC---HHHHHHHH
Q 016133 136 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GIS-CAAY--------------------HAG--LN---DKARSSVL 188 (394)
Q Consensus 136 l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~~-~~~~--------------------h~~--l~---~~~R~~~~ 188 (394)
+..+++.. +.++||-+++...++.++..|... +-. +..| +.. -+ ...|..++
T Consensus 49 ia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l 127 (652)
T PRK05298 49 MANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSAT 127 (652)
T ss_pred HHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHH
Confidence 44444443 457999999999999999999765 323 4444 011 11 34678889
Q ss_pred HHHhcCCCeEEEeccccccccCCCC----ccEEEEecCCCCHHHHHHHHhhcc
Q 016133 189 DDWISSRKQVVVATVAFGMGIDRKD----VRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 189 ~~f~~g~~~iLVaT~~~~~GiD~p~----v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
..+.+++..|+|+|..+-.++=-|+ ....+..+-..+...+..+.-..|
T Consensus 128 ~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~G 180 (652)
T PRK05298 128 KSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDLQ 180 (652)
T ss_pred HHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHcC
Confidence 9998887778888765446664333 445667777777887776655444
No 375
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=40.87 E-value=77 Score=34.18 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
.+...++||||||.+.. .....|.......|+.-+++|.+|-+..+
T Consensus 116 ~g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred cCCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 45678999999998863 23445544555555444555555544333
No 376
>PRK13767 ATP-dependent helicase; Provisional
Probab=40.42 E-value=67 Score=35.64 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=48.3
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh---------------C-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cc--
Q 016133 146 TCAIVYCLERTTCDELSAYLSA---------------G-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-- 206 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~---------------~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~-- 206 (394)
.++|+.+++++-+.+++..|.+ . ++.+...||+.+..++.+.+. ...+|||+|.- +.
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHH
Confidence 3588889999988887765431 1 567889999999888765443 46789999962 11
Q ss_pred ---ccc--CCCCccEEEE
Q 016133 207 ---MGI--DRKDVRLVCH 219 (394)
Q Consensus 207 ---~Gi--D~p~v~~VI~ 219 (394)
..+ .+.++++||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 111 3567888873
No 377
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=40.28 E-value=37 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 161 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 161 l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
.+++|++.|+.+...|..... .+..+.+.+++|+++.+|.|..
T Consensus 22 Ta~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 22 TAKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 367788889887544433321 1235888999999998888763
No 378
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=40.21 E-value=75 Score=24.37 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.8
Q ss_pred CCccEEEEeCcHHHHHHHHHH-----HHhCCC-ceEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAY-----LSAGGI-SCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~-----L~~~g~-~~~~~h~~l~~ 181 (394)
....+|+||.+-......+.. |...|+ ++..+.||+..
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 445689999665555555544 888888 88889998643
No 379
>PRK05642 DNA replication initiation factor; Validated
Probab=40.11 E-value=55 Score=29.85 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=34.9
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~ 93 (394)
.+++|++.+.+.... ..+.+. ....++++||++|.+.... ... ..+..+..... +-..+++|+|.++.
T Consensus 74 ~~v~y~~~~~~~~~~--~~~~~~--~~~~d~LiiDDi~~~~~~~-~~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 74 EPAVYLPLAELLDRG--PELLDN--LEQYELVCLDDLDVIAGKA-DWE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred CcEEEeeHHHHHhhh--HHHHHh--hhhCCEEEEechhhhcCCh-HHH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 467777776443221 111111 1236899999999775211 011 23444443332 23457777776554
No 380
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.97 E-value=73 Score=24.30 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=32.8
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
..+++++| ..+.+ .....-+..++...++.|++++|++..........
T Consensus 43 ~~d~iiid--~~~~~-----~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~ 90 (112)
T PF00072_consen 43 PPDLIIID--LELPD-----GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL 90 (112)
T ss_dssp TESEEEEE--SSSSS-----SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH
T ss_pred CceEEEEE--eeecc-----ccccccccccccccccccEEEecCCCCHHHHHHHH
Confidence 38999999 22332 12235566677777899999999888766655443
No 381
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.65 E-value=1.1e+02 Score=32.37 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=27.6
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
..+.-.++||||+|.+..- ....|.......|+.-+++|.+|-.
T Consensus 124 ~~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred hcCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 3456789999999988642 2345555555555555555655533
No 382
>PRK04132 replication factor C small subunit; Provisional
Probab=39.56 E-value=57 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=29.7
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
...++||||||.+.. ..-..|..+....|+.-.+.+.++.+..+..
T Consensus 630 ~~KVvIIDEaD~Lt~------~AQnALLk~lEep~~~~~FILi~N~~~kIi~ 675 (846)
T PRK04132 630 SFKIIFLDEADALTQ------DAQQALRRTMEMFSSNVRFILSCNYSSKIIE 675 (846)
T ss_pred CCEEEEEECcccCCH------HHHHHHHHHhhCCCCCeEEEEEeCChhhCch
Confidence 457999999999874 2234566666666655566666665554433
No 383
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=39.55 E-value=44 Score=32.13 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
.++.+++|||.+=..+...+.+|.+.|+. +..+.||+..
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 45678999999988889999999999995 8889999744
No 384
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.54 E-value=84 Score=30.53 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=39.0
Q ss_pred hHHHHHHHhhccC-CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 31 PGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 31 p~~~~~l~~~~~~-~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
+.-..++..+... ..+++|+||=|| ||. ......+..++..+|+.++++= --.+++...++.
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD~Ah-----Ghs-~~~i~~ik~ik~~~P~~~vIaG-NV~T~e~a~~Li 169 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICIDVAN-----GYS-EHFVQFVAKAREAWPDKTICAG-NVVTGEMVEELI 169 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHHhCCCCcEEEe-cccCHHHHHHHH
Confidence 4444455554442 459999999999 543 3445678889999999887654 233344444433
No 385
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=39.15 E-value=88 Score=29.08 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCC---CceEEecCC-CCHHHHHHHHHHHhcCCCeEEEecc-----cccc-ccCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGG---ISCAAYHAG-LNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g---~~~~~~h~~-l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~v 214 (394)
...+||.|.+--.|-.+...|+... ..++-+-+. +.-++. ++.++.+.+.|.|+|+ .+.. .+.+.++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eq---v~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQ---VKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHH---HHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3468999999999999999998752 334333332 233333 3334568899999996 2232 3456677
Q ss_pred cEEE------------EecCCCCHHHHHHHHhh
Q 016133 215 RLVC------------HFNIPKSMEAFYQESGR 235 (394)
Q Consensus 215 ~~VI------------~~~~p~s~~~y~Qr~GR 235 (394)
.+|| .||+|.+...+++-.++
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 7766 35677766666665444
No 386
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=38.99 E-value=1.7e+02 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=36.9
Q ss_pred CCccEEEEeC-cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh
Q 016133 144 GDTCAIVYCL-ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192 (394)
Q Consensus 144 ~~~~~IVF~~-s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 192 (394)
++.+++|||. +-..+..++..|...|+.+..+.||+..- |..+++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4568999995 55667888999999999999999998654 555555554
No 387
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=38.25 E-value=40 Score=37.47 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=23.5
Q ss_pred EEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 48 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 48 ~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.||+||+|.+...+. .+ ..+....|. -++.+|||.+.
T Consensus 204 ivIiDEPh~~~~~~k----~~---~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRDNK----FY---QAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcchH----HH---HHHHhcCcc-cEEEEeeecCC
Confidence 589999999865331 22 334333332 36779999876
No 388
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=38.25 E-value=2.5e+02 Score=31.47 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=50.8
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC--CCeEEEecc
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATV 203 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~ 203 (394)
-+||-.+=+.-.+.....|...++++..+||+++..+|..+++.+.+| .++||--|+
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 577878888888888888888999999999999999999999999999 888887774
No 389
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=38.16 E-value=49 Score=33.06 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=32.6
Q ss_pred HHHhcCCCcccEEEeCCc-------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 9 EDLDSGKPSLRLLYVTPE-------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 9 ~~l~~g~~~~~il~~tPe-------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.+.....++..+++-|. .+.+++++..+..+.....+ ++|+||+|+
T Consensus 191 ~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~-llI~DEv~t 244 (423)
T PRK05964 191 ALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGV-LLIFDEIAT 244 (423)
T ss_pred HHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhh
Confidence 334433335778888884 23477888888877766555 689999995
No 390
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=37.55 E-value=3.6e+02 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
....+..+++..+ .+..|||.+...+..+...|.+.|+.+
T Consensus 230 ~~~~~~~~l~~~~-~~~ai~~~nd~~A~g~~~~l~~~g~~v 269 (342)
T PRK10014 230 AAEAITALLRHNP-TISAVVCYNETIAMGAWFGLLRAGRQS 269 (342)
T ss_pred HHHHHHHHHcCCC-CCCEEEECCcHHHHHHHHHHHHcCCCC
Confidence 3455666665543 356788888888888888888776543
No 391
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=37.44 E-value=95 Score=32.54 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+...++||||+|.+... ....|.......|..-+++|.+|-...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~------a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS------AFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred cCCCEEEEEEChhhcCHH------HHHHHHHhhccCCCCEEEEEecCChHH
Confidence 456789999999988642 234444444444444445555554333
No 392
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.33 E-value=1e+02 Score=32.74 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
+...++||||||.+..- ....|.......|..-+++|.+|-+..
T Consensus 120 ~~~KViIIDEad~Lt~~------a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA------AFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred CCceEEEEECccccCHH------HHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 55789999999988642 234454444544444445555554333
No 393
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=37.32 E-value=25 Score=32.68 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=20.8
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAH 55 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH 55 (394)
++||+|+..|. .......+.+||||--|
T Consensus 182 vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 182 VGTPGRLSKLLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred EeChHHHHHHHHcCCCCcccCeEEEEcCCc
Confidence 67888887773 34456778999999766
No 394
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.26 E-value=99 Score=31.43 Aligned_cols=70 Identities=9% Similarity=0.196 Sum_probs=51.7
Q ss_pred cEEEEeCcHHHHHHHHHHHHh-----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cccc---ccCCCC
Q 016133 147 CAIVYCLERTTCDELSAYLSA-----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM---GIDRKD 213 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~-----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~---GiD~p~ 213 (394)
-++|-.+|++-+.++.+.+.. ..+++..+-||.+.++ -++.|++...+|||+|+ ++.+ ++|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 368999999988777665543 3677889999976554 46778888899999995 5555 566667
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
..++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 777763
No 395
>PRK10329 glutaredoxin-like protein; Provisional
Probab=37.16 E-value=1.7e+02 Score=21.66 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=38.3
Q ss_pred cEEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 147 CAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 147 ~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
++.||. .+.-.|..+...|.+.|+....+.-...++.+..... .-...+++|+--+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECC
Confidence 467776 5678899999999999999888877766655554432 2234566666543
No 396
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=36.84 E-value=1e+02 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
..-.++||||||.+.. .....|.......|+..+++|.+|-+..+.
T Consensus 118 ~~~KVIIIDEad~Lt~------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 118 FKYKVYIIDEAHMLST------SAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CCcEEEEEechHhCCH------HHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 4467899999998863 233456555666666556666666544443
No 397
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=36.73 E-value=1.8e+02 Score=24.31 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe-ccccc
Q 016133 130 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA-TVAFG 206 (394)
Q Consensus 130 ~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa-T~~~~ 206 (394)
..+...+..++.+ ..+.+++|+|.+.+.++.|-+.|-...-....=|+-.... ......|+++ ++.
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~-- 80 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGK-- 80 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCC--
Confidence 3455566666654 2467999999999999999999988755555566643221 0234678887 321
Q ss_pred cccCCCCccEEEEecC
Q 016133 207 MGIDRKDVRLVCHFNI 222 (394)
Q Consensus 207 ~GiD~p~v~~VI~~~~ 222 (394)
-+.+.-.++||.+.
T Consensus 81 --~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 --RNANHRDLLINLDG 94 (142)
T ss_pred --CCCCCCcEEEECCC
Confidence 23344567887763
No 398
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.68 E-value=2.2e+02 Score=27.12 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCceEEecCC------CCHHHHHHHHHHHh---cCCCeEEEecc
Q 016133 157 TCDELSAYLSAGGISCAAYHAG------LNDKARSSVLDDWI---SSRKQVVVATV 203 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h~~------l~~~~R~~~~~~f~---~g~~~iLVaT~ 203 (394)
...++.++|.+.|+...++-|. ++.+||.++++... +|+++|++.|.
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g 81 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG 81 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC
Confidence 3444555555555554444443 56677777666654 46677776654
No 399
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=36.61 E-value=3.6e+02 Score=25.23 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCC
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 169 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g 169 (394)
..+.+.+++...+..+.-|||.+-..+..+...|.+.|
T Consensus 224 ~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~~~g 261 (327)
T TIGR02417 224 GYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYMLERP 261 (327)
T ss_pred HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcC
Confidence 34555666654432356778877777777777777665
No 400
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=36.44 E-value=42 Score=37.06 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=28.8
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
......++||-||+|.+-.-.. .+..........+.|+||+|+-..
T Consensus 817 lvdpGPD~vVCDE~HiLKNeks-------a~Skam~~irtkRRI~LTGTPLQN 862 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEGHILKNEKS-------AVSKAMNSIRTKRRIILTGTPLQN 862 (1567)
T ss_pred ccCCCCCeEEecchhhhccchH-------HHHHHHHHHHhheeEEeecCchhh
Confidence 3345589999999998865332 222222222335689999997544
No 401
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=36.37 E-value=90 Score=31.81 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHh----C-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSA----G-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~----~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
++-.+||-|+|++-+-+++..+++ . ++.+..+-||.... .-.++... .+++||||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhc-cccEEEeCC
Confidence 344689999999998888877665 3 66777777775432 23344555 789999996
No 402
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=36.15 E-value=83 Score=30.95 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.+...++||||+|.+.. .....|.+..+..|+..++++++.-+.
T Consensus 139 ~~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred cCCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 35578999999998753 333455555566555555656554443
No 403
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=35.94 E-value=1.1e+02 Score=27.06 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=36.4
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.........++||+||.--.+.+|. -+ ...+..+....|..+-+.+|..-.|.
T Consensus 115 ~~~l~~~~ydlviLDEl~~al~~g~--l~-~eeV~~~l~~kP~~~~vIiTGr~ap~ 167 (198)
T COG2109 115 KEALADGKYDLVILDELNYALRYGL--LP-LEEVVALLKARPEHTHVIITGRGAPP 167 (198)
T ss_pred HHHHhCCCCCEEEEehhhHHHHcCC--CC-HHHHHHHHhcCCCCcEEEEECCCCCH
Confidence 3444556799999999998888873 33 24455566666777778888874443
No 404
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=35.78 E-value=99 Score=30.03 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=35.5
Q ss_pred hHHHHHHHhhccCC-CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEE-eec
Q 016133 31 PGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL-TAT 89 (394)
Q Consensus 31 p~~~~~l~~~~~~~-~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~l-SAT 89 (394)
|.-..++..+.... .+++|+||=|| ||. ......+..++..+|+.++++= -+|
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~Ah-----Ghs-~~~i~~ik~ir~~~p~~~viaGNV~T 160 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVAN-----GYS-EHFVEFVKLVREAFPEHTIMAGNVVT 160 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHhhCCCCeEEEecccC
Confidence 44444555554432 58999999999 543 3445678889999998777765 444
No 405
>PRK07413 hypothetical protein; Validated
Probab=35.22 E-value=81 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=38.2
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec--CChhHH
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT--AAPKVQ 95 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT--~~~~~~ 95 (394)
......+..++||+||+-....+| +-+. ..+..+....|...-+.+|.- +|++..
T Consensus 298 ~~~i~~g~ydlvVLDEi~~Al~~g--li~~-eevi~~L~~rp~~~evVLTGR~~ap~~li 354 (382)
T PRK07413 298 RAAIASGLYKTIILDELNPTVDLE--LLPV-EPIVQTLLRKPRDTEVIITGRCKNQPAYF 354 (382)
T ss_pred HHHHhCCCCCEEEEechHHHHHCC--CccH-HHHHHHHHhCCCCCEEEEeCCCCCCHHHH
Confidence 444455779999999999988888 4443 345556666777777888887 444444
No 406
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=35.22 E-value=21 Score=39.21 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=22.5
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
+.+|+++.-..+.+ ++.........+++||||||.+.+
T Consensus 413 ~AdivItNHall~~-----~~~~~~~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 413 TARLLITNHAYFLT-----RVQDDKDFARNKVLVFDEAQKLML 450 (820)
T ss_pred hCCEEEEchHHHHH-----HHhhccCCCCCCEEEEECcchhHH
Confidence 35666555443322 222222235578999999998874
No 407
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=35.16 E-value=37 Score=29.87 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=11.6
Q ss_pred CccEEEEecCCcccc
Q 016133 45 LLNLVAIDEAHCISS 59 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~ 59 (394)
.=.+|||||||.+..
T Consensus 79 ~~~liviDEa~~~~~ 93 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFP 93 (193)
T ss_dssp TT-EEEETTGGGTSB
T ss_pred CCcEEEEECChhhcC
Confidence 357899999998764
No 408
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=35.10 E-value=47 Score=26.80 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=27.7
Q ss_pred CCccEEEEeC-cHHHHHHHHHHHHhC------------CC-ceEEecCCCC
Q 016133 144 GDTCAIVYCL-ERTTCDELSAYLSAG------------GI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~-s~~~~~~l~~~L~~~------------g~-~~~~~h~~l~ 180 (394)
+..++|+||. +-..+...+..|... |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567999996 777777788888764 54 5778888864
No 409
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=35.03 E-value=59 Score=26.14 Aligned_cols=44 Identities=7% Similarity=0.031 Sum_probs=31.2
Q ss_pred HHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 160 ELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 160 ~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
-.+++|++ .|+++..+..+ +.+.+..+.+.+++|+++.+|.|..
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hHHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 34667777 79988777221 1234567899999999999988864
No 410
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=34.74 E-value=1.9e+02 Score=31.99 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCccEEEEeCcHHH----HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc
Q 016133 133 YADLCSVLKANGDTCAIVYCLERTT----CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 205 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~~s~~~----~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~ 205 (394)
...+..++....+..+-|.+.|.-- ++.+...+...|+++..+.+++++.+|..++. .+|+.+|.+.
T Consensus 111 vA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 111 VGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 4445555555556677777877644 45555555567999999999999999998876 7899999764
No 411
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=34.72 E-value=2e+02 Score=26.96 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=48.6
Q ss_pred HhcCCCcccEEEeCCce--ecChHHHHHHHhhc--c--CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEE
Q 016133 11 LDSGKPSLRLLYVTPEL--TATPGFMSKLKKIH--S--RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 84 (394)
Q Consensus 11 l~~g~~~~~il~~tPe~--v~tp~~~~~l~~~~--~--~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l 84 (394)
+.+|. ..++.++.|+. +...........+. . .+..+++|||+||.+... ....|-++.+..|..-++
T Consensus 49 i~~~~-HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~------AaNaLLK~LEEPp~~t~f 121 (261)
T PRK05818 49 ILNGK-YNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQ------SANSLLKLIEEPPKNTYG 121 (261)
T ss_pred HhcCC-CCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHH------HHHHHHHhhcCCCCCeEE
Confidence 33443 45778888883 33333222222221 1 245789999999998642 234555566666655566
Q ss_pred EEeecCChhHHHHHHHH
Q 016133 85 ALTATAAPKVQKDVMES 101 (394)
Q Consensus 85 ~lSAT~~~~~~~~i~~~ 101 (394)
+|+++-+..+...|..+
T Consensus 122 iLit~~~~~lLpTI~SR 138 (261)
T PRK05818 122 IFTTRNENNILNTILSR 138 (261)
T ss_pred EEEECChHhCchHhhhh
Confidence 77777666666655543
No 412
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=34.69 E-value=1.3e+02 Score=27.99 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 170 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~ 170 (394)
-+.++.+...|+. ++.+.+|+++.++++.+.+.|++.|+
T Consensus 175 W~~le~~~~~Lkp--gg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 175 WNVLEHVSDALKP--GGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHHHhCC--CcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3556666666654 56899999999999999999998764
No 413
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=34.47 E-value=59 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=30.8
Q ss_pred CcccEEEeCCc-------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 16 PSLRLLYVTPE-------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 16 ~~~~il~~tPe-------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.++--+++-|- .+..++++..+.++.+...+ ++|+||+|+
T Consensus 205 ~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~-llI~DEv~t 251 (429)
T PRK06173 205 DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV-LLIFDEIAT 251 (429)
T ss_pred CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC-eEEecchhc
Confidence 35788888884 23578899999888776655 689999994
No 414
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.39 E-value=82 Score=31.39 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=25.2
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
+=-++.|||+|++..-..| . ++....+-.++++-||-.
T Consensus 104 r~tiLflDEIHRfnK~QQD-------~--lLp~vE~G~iilIGATTE 141 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQD-------A--LLPHVENGTIILIGATTE 141 (436)
T ss_pred CceEEEEehhhhcChhhhh-------h--hhhhhcCCeEEEEeccCC
Confidence 3457999999987643322 1 445555677888888843
No 415
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.39 E-value=88 Score=30.64 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.=++||++|++-+-++++.|.-. +.++..+.||++.-.... -......++|||.
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~----~L~~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA----ILSDRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh----hcccCCCeEecCc
Confidence 334799999999999999999754 678899999986543322 2356778999995
No 416
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.23 E-value=64 Score=28.90 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=46.4
Q ss_pred HHHHHHHHh-CCCccEEEEeCcHHHHHHHHHHHHhCCCce---EEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 134 ADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 134 ~~l~~~l~~-~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.|.+.+.. ..++++++ ......-..+.+.|++.|+.+ ..|.. .+........+.|..+.+.+++-|+
T Consensus 105 ~~L~~~l~~~~~~~~vl~-~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS 176 (231)
T PF02602_consen 105 EGLAELLKEQLRGKRVLI-LRGEGGRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTS 176 (231)
T ss_dssp HHHHGGHHHCCTTEEEEE-EESSSSCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESS
T ss_pred HHHHHHHHhhCCCCeEEE-EcCCCccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECC
Confidence 444555553 44445554 444444677999999998664 45666 6677888889999988888777775
No 417
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=34.18 E-value=3.6e+02 Score=27.19 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCceEEec-CCCCHHHHHHHHHHHhcCCCeEEEecccccccc-CCC---------------------
Q 016133 156 TTCDELSAYLSAGGISCAAYH-AGLNDKARSSVLDDWISSRKQVVVATVAFGMGI-DRK--------------------- 212 (394)
Q Consensus 156 ~~~~~l~~~L~~~g~~~~~~h-~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi-D~p--------------------- 212 (394)
...++++..++...-++.+.- |-+...+--..+.+|.+ ..+|=|+|..+|.|- |-.
T Consensus 286 ~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fse-r~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq 364 (675)
T KOG4166|consen 286 SHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSE-RTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQ 364 (675)
T ss_pred HHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHH-hhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhh
Confidence 445666666666555665543 33454454455666654 456778888877763 322
Q ss_pred CccEEEEec------CCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 213 DVRLVCHFN------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 213 ~v~~VI~~~------~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
+.++++-++ ...+++.|.-|+-||.--|+.|....=+++.+.
T Consensus 365 ~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdispknI 412 (675)
T KOG4166|consen 365 HADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDISPKNI 412 (675)
T ss_pred ccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecCHHHh
Confidence 223444444 235788898888888877777777666666543
No 418
>PRK09004 FMN-binding protein MioC; Provisional
Probab=34.17 E-value=2.5e+02 Score=23.47 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=38.8
Q ss_pred EEEEeCcHHHH----HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC
Q 016133 148 AIVYCLERTTC----DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 223 (394)
Q Consensus 148 ~IVF~~s~~~~----~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p 223 (394)
.|+|...--.+ +.+++.|...|+.+..+.-. . .+.+.+. -.+++.|+..+.| ++|
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~-~-------~~~l~~~-~~li~~~sT~G~G------------e~p 63 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGP-L-------LDDLSAS-GLWLIVTSTHGAG------------DLP 63 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccC-C-------HHHhccC-CeEEEEECCCCCC------------CCC
Confidence 46666554444 45555556668777654321 1 2345443 4577788888888 567
Q ss_pred CCHHHHHHHH
Q 016133 224 KSMEAFYQES 233 (394)
Q Consensus 224 ~s~~~y~Qr~ 233 (394)
.+...|+...
T Consensus 64 ~~~~~f~~~L 73 (146)
T PRK09004 64 DNLQPFFEEL 73 (146)
T ss_pred hhHHHHHHHH
Confidence 7777776543
No 419
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=34.17 E-value=77 Score=30.48 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 134 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 134 ~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+.|..++.. .++.++|+||++-..+-.++-.|+..|+. +..|.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 445555543 24568999999987888888888888985 788999864
No 420
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=33.64 E-value=68 Score=35.21 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=35.0
Q ss_pred cEEEEe-CcHHHHHHHHHHHHhC---------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 016133 147 CAIVYC-LERTTCDELSAYLSAG---------------------------GISCAAYHAGLNDKARSSVLDDWISSRKQV 198 (394)
Q Consensus 147 ~~IVF~-~s~~~~~~l~~~L~~~---------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~i 198 (394)
+.|||+ +|++-+.++++.+.+. ++++..++||.+..... +.. .....|
T Consensus 63 ~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l-~~~p~I 138 (844)
T TIGR02621 63 RRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLD-PHRPAV 138 (844)
T ss_pred ceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---Hhc-CCCCcE
Confidence 467766 8887777776665432 26678889998765332 222 245689
Q ss_pred EEecc
Q 016133 199 VVATV 203 (394)
Q Consensus 199 LVaT~ 203 (394)
||+|.
T Consensus 139 IVgT~ 143 (844)
T TIGR02621 139 IVGTV 143 (844)
T ss_pred EEECH
Confidence 99994
No 421
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=33.54 E-value=89 Score=21.63 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=35.2
Q ss_pred eCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe
Q 016133 152 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201 (394)
Q Consensus 152 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 201 (394)
......|..+...|.+.++....+.-.-.+..+....+.+..+.+++++-
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 35567788888889888888777766555555666666676666776664
No 422
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=33.35 E-value=3.2e+02 Score=23.66 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCccEEEEeCc--------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 016133 132 AYADLCSVLKANGDTCAIVYCLE--------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s--------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 194 (394)
..+.+.++.+..+..+++|+.|+ ...++.+.+.| |+++.. |+...+.-..++++-|...
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl~-h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVLR-HRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEEE-eCCCCCccHHHHHHHHhhc
Confidence 33444444444444579999998 45555555555 566544 4444446667788888643
No 423
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.20 E-value=2.6e+02 Score=27.62 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCc-H---HHHHHHHHHHHhCCCceEEecCC---CCHHHHHHHHHHHhcCCCeEEEec
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLE-R---TTCDELSAYLSAGGISCAAYHAG---LNDKARSSVLDDWISSRKQVVVAT 202 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s-~---~~~~~l~~~L~~~g~~~~~~h~~---l~~~~R~~~~~~f~~g~~~iLVaT 202 (394)
..+..|...++..+.++++|.+.. . ...+.+.+.|++.|+.+..|.+- =+.+.-.+..+.++..+.++||+-
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456667777776654566666543 2 24567888888888877666653 234455667777788888888864
No 424
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=33.11 E-value=48 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=26.9
Q ss_pred CcccEEEeCCceecChHHHHHHHhhccCCCccEEEEe
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 52 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvD 52 (394)
++++.|++|||....-...........+..+..++|+
T Consensus 88 ~~~d~lVVS~ET~~~~~~iN~~R~~~gl~pl~i~~v~ 124 (143)
T cd02164 88 PDLEAIVVSPETYPGALKINRKREENGLSPLEIVVVP 124 (143)
T ss_pred CCCCEEEEcHHHhhhHHHHHHHHHHCCCCceeEEEEE
Confidence 4688888888877766667776666666677777765
No 425
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=33.09 E-value=1.6e+02 Score=29.17 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CccEEEE---eCcHHHHHHHHHHHHhCCCc---eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc
Q 016133 145 DTCAIVY---CLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 145 ~~~~IVF---~~s~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
+..+||+ +.|=.+....++.|++.|.. +...||-++ ....++.+.|.+|.+.-+|+|+..-
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~ 330 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVY 330 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCc
Confidence 4456666 56778888899999988654 667799988 6666777778888899999999863
No 426
>PRK05723 flavodoxin; Provisional
Probab=33.03 E-value=3e+02 Score=23.20 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred EEEEeCcHHHHH----HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC
Q 016133 148 AIVYCLERTTCD----ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 223 (394)
Q Consensus 148 ~IVF~~s~~~~~----~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p 223 (394)
+|+|....-.++ .+++.|...|+.+.. +...+..+ +..+. .-.+|+.|+..+.| ++|
T Consensus 4 ~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~-~~~~~~~~----~~~~~--~~~li~~~sT~G~G------------e~P 64 (151)
T PRK05723 4 AILSGSVYGTAEEVARHAESLLKAAGFEAWH-NPRASLQD----LQAFA--PEALLAVTSTTGMG------------ELP 64 (151)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHCCCceee-cCcCCHhH----HHhCC--CCeEEEEECCCCCC------------CCc
Confidence 466665444444 455555555766543 22233221 12221 22578888888888 678
Q ss_pred CCHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 224 KSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 224 ~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
.+...|+..+-...-..-.+..+-++.-.|
T Consensus 65 d~~~~f~~~L~~~~~~~l~~~~~aVfGLGD 94 (151)
T PRK05723 65 DNLMPLYSAIRDQLPAAWRGLPGAVIALGD 94 (151)
T ss_pred hhHHHHHHHHHhcCccCCCCCEEEEEeEeC
Confidence 888888877643321134455555554443
No 427
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=32.99 E-value=77 Score=31.96 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=28.8
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
++..+++-|- ....++++..+..+...... ++|+||+|+
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~-llI~DEv~t 245 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGS-LSIMDEVVT 245 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcccc
Confidence 4678888885 23357788888777765554 789999995
No 428
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=32.82 E-value=2.1e+02 Score=29.92 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=56.5
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc-----cccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-----~GiD~p~v~~VI 218 (394)
+..++.||+.|+..--..+.---+.++++...++.|..+ .++..+.+-+...|++.+.+- .--..+.|.+||
T Consensus 114 ~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II 190 (678)
T KOG1180|consen 114 KETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHII 190 (678)
T ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEE
Confidence 344699999999887777777778899999999988765 355666667777777765331 113567899999
Q ss_pred EecC
Q 016133 219 HFNI 222 (394)
Q Consensus 219 ~~~~ 222 (394)
+++.
T Consensus 191 ~~d~ 194 (678)
T KOG1180|consen 191 YFDP 194 (678)
T ss_pred EecC
Confidence 9984
No 429
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=32.70 E-value=80 Score=29.56 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCC------ccE
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------VRL 216 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~------v~~ 216 (394)
.+.-++||+++....+-...+..++..-.+..+-|.....- .++ +...++.+.++-..+|..++. ...
T Consensus 60 Dp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~EDp--~~i----~~~aDi~~~~D~~~~G~~i~~~Ak~mGAkt 133 (275)
T PF12683_consen 60 DPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHEDP--EVI----SSAADIVVNPDEISRGYTIVWAAKKMGAKT 133 (275)
T ss_dssp -TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S-H--HHH----HHHSSEEEE--HHHHHHHHHHHHHHTT-S-
T ss_pred CCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCCH--HHH----hhccCeEeccchhhccHHHHHHHHHcCCce
Confidence 45668999999999988888888887767777777654322 112 234689999999999988764 567
Q ss_pred EEEecCCCCHH
Q 016133 217 VCHFNIPKSME 227 (394)
Q Consensus 217 VI~~~~p~s~~ 227 (394)
.|||..|..+.
T Consensus 134 FVh~sfprhms 144 (275)
T PF12683_consen 134 FVHYSFPRHMS 144 (275)
T ss_dssp EEEEEETTGGG
T ss_pred EEEEechhhcc
Confidence 88999998664
No 430
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=32.70 E-value=1.1e+02 Score=27.75 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=43.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCce---EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEe
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 220 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~ 220 (394)
.++++++++ ....-+.+.+.|.+.|+.+ ..|.............+.|.++.+.+++-|+
T Consensus 117 ~~~~vL~~r-g~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S----------------- 178 (240)
T PRK09189 117 PTARLLYLA-GRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS----------------- 178 (240)
T ss_pred CCCcEEEec-cCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC-----------------
Confidence 344555554 4555589999999998875 3454432322334556677777665554444
Q ss_pred cCCCCHHHHHHHHhhc
Q 016133 221 NIPKSMEAFYQESGRA 236 (394)
Q Consensus 221 ~~p~s~~~y~Qr~GRa 236 (394)
|.+...|++..|..
T Consensus 179 --~~~~~~f~~~~~~~ 192 (240)
T PRK09189 179 --RVAARRFFALMRLS 192 (240)
T ss_pred --HHHHHHHHHHHhhh
Confidence 44566777766543
No 431
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.56 E-value=4e+02 Score=24.47 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
..+.+..++..++..+..|||.+-..+..+...|.+.|+.
T Consensus 176 ~~~~~~~~l~~~~~~~~~I~~~~d~~a~g~~~al~~~g~~ 215 (288)
T cd01538 176 AQKRMENALTANYNKVDGVLAANDGTAGGAIAALKAAGLA 215 (288)
T ss_pred HHHHHHHHHHhCCCCccEEEeCCcHHHHHHHHHHHHcCCC
Confidence 4456667777654357889999989999999999888765
No 432
>PHA00012 I assembly protein
Probab=32.51 E-value=69 Score=31.11 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=25.9
Q ss_pred CCccEEEEecCCcccc---CCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 44 GLLNLVAIDEAHCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~---~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
..-+++||||||.... ||..-++.+.......++ -+.-++++|-.+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh-~G~DvilITQ~p 128 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARK-LGWDIIFIIQDI 128 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhcc-CCceEEEEcCCH
Confidence 4567899999999874 664334434442111111 145566665544
No 433
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=32.43 E-value=1.2e+02 Score=28.72 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
...++|||||+|.+.. ......|..+....+..-.+.+|++.......
T Consensus 99 ~~~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 99 GGGKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKNGIIE 146 (316)
T ss_pred CCCeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChhhchH
Confidence 3567899999998732 11223444555555543345555554433333
No 434
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.25 E-value=3.4e+02 Score=23.53 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=62.3
Q ss_pred EEEecCCccccCCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcC
Q 016133 49 VAIDEAHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 127 (394)
Q Consensus 49 iVvDEaH~l~~~g~~fr~~~~~-l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~ 127 (394)
.|+|-...-.. |-|+... |..+.. .++++.+-|-|..|+....+++.|++........+ ...-..+.-.+..
T Consensus 35 ~v~D~~g~~v~----lypdv~~iL~~L~~--~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~-~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVS----LYPDVPEILQELKE--RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVP-LIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE-------TTHHHHHHHHHH--CT--EEEEE--S-HHHHHHHHHHTT-C-----------CCECEEEESSS
T ss_pred EEEeCCCCEEE----eCcCHHHHHHHHHH--CCCEEEEEECCCChHHHHHHHHhcCCCcccccccc-chhhcchhheecC
Confidence 56776655443 2233333 333333 58889999999999999999999988711111111 1111122222222
Q ss_pred chhhHHHHHHHHHHhC--CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 128 LLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 128 ~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
.|...+..+.+.. +...+|.|=+.....+.+. +.|+.+.....||+.+.=++-++.|++
T Consensus 108 ---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 108 ---SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp ----HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHhcCCChhHEEEecCchhcceeeE----ecCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 4555555554432 3334555555555555543 378888888889999988888888864
No 435
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.15 E-value=1.3e+02 Score=31.78 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 90 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~ 90 (394)
.....+|||||+|.+.. .....|.......+..-++++.+|-
T Consensus 118 ~~~~kVvIIDEa~~L~~------~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 118 LARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred cCCeEEEEEeChHhCCH------HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 35578999999998864 2234454444554444455555553
No 436
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=32.11 E-value=46 Score=26.53 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCceEEe--cCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 160 ELSAYLSAGGISCAAY--HAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 160 ~l~~~L~~~g~~~~~~--h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
..+++|.+.|+++..+ ..+.+......+.+.+++|+++++|.|..
T Consensus 34 gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 34 GTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred HHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 4566777888877655 22222211256788889999999999864
No 437
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.49 E-value=2.8e+02 Score=28.91 Aligned_cols=128 Identities=10% Similarity=0.018 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHhCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHH----------hCCCccEEEEeCcHH
Q 016133 90 AAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLK----------ANGDTCAIVYCLERT 156 (394)
Q Consensus 90 ~~~~~~~~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~----------~~~~~~~IVF~~s~~ 156 (394)
+.+.....+...|++..|..+... .-...-..-|.........+..+.-++. ...+.-++|.++|++
T Consensus 143 L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTRE 222 (708)
T KOG0348|consen 143 LHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRE 222 (708)
T ss_pred CCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHH
Confidence 456666777778887766433211 1001112222322222333443333332 123446899999999
Q ss_pred HHHHHHHHHHhCCCceEEec-CCCCHHHHHHHH-HHHhcCCCeEEEeccc-------cccccCCCCccEEE
Q 016133 157 TCDELSAYLSAGGISCAAYH-AGLNDKARSSVL-DDWISSRKQVVVATVA-------FGMGIDRKDVRLVC 218 (394)
Q Consensus 157 ~~~~l~~~L~~~g~~~~~~h-~~l~~~~R~~~~-~~f~~g~~~iLVaT~~-------~~~GiD~p~v~~VI 218 (394)
-|.++++.+++.--++..+- |.+--.++.+.. .+++. -++|||+|+- -...|++..+++||
T Consensus 223 L~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-GiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 223 LALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-GINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred HHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-CceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999998887633322111 111111222222 33444 4799999961 12345555566665
No 438
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=31.48 E-value=3e+02 Score=24.28 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=52.2
Q ss_pred HHHHHHHHHhC-CCccEEEEeCcHHHHHHHHHHHHhCCCceEE---ecCCCCHHHHHHHHHHHhcCCCeEEEeccccccc
Q 016133 133 YADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAA---YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208 (394)
Q Consensus 133 ~~~l~~~l~~~-~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~---~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 208 (394)
.+.|.+++... ..+..|++.........+.+.|.+.|..+.. |.-.-.... ....+.|..+...+|+-|+
T Consensus 108 ~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS----- 181 (239)
T cd06578 108 SEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTS----- 181 (239)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeC-----
Confidence 34555555554 2345566666666677889999888876533 322211111 2334555555554444443
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
|.+...|.+...+.+.......-++-.++.
T Consensus 182 --------------~~~v~~f~~~~~~~~~~~~~~~~~~aig~~ 211 (239)
T cd06578 182 --------------PSTVRNLLELLGKEGRALLKNVKIAAIGPR 211 (239)
T ss_pred --------------HHHHHHHHHHHhhhhhhhhcCCeEEEECHH
Confidence 445566666666555322233334444443
No 439
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=31.46 E-value=2.8e+02 Score=26.60 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=33.4
Q ss_pred cEEEEeC-cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh
Q 016133 147 CAIVYCL-ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192 (394)
Q Consensus 147 ~~IVF~~-s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 192 (394)
.++|||. +-..+...+..|...|+.+..+.||+..- +......+.
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw-~~~~~~~~~ 121 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY-RRFVIDQLE 121 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH-HHhhhhhhh
Confidence 4999995 55678888999999999999999997543 344444443
No 440
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.44 E-value=3.8e+02 Score=23.97 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
.....+.++++..+ ....|||.+-..+..+...|++.|+.
T Consensus 164 ~~~~~~~~~l~~~~-~~~ai~~~~d~~a~~~~~~l~~~g~~ 203 (270)
T cd06296 164 SGFRAAAELLALPE-RPTAIFAGNDLMALGVYEAARERGLR 203 (270)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHhCCC
Confidence 34555666666543 45678888888888888899887653
No 441
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.25 E-value=4.2e+02 Score=24.40 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CCceE-EecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCA-AYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
+.+..+.+..... +.++-++-.+...++.+++.|++. ++.+. .+||-.++++...+.+.......++|+
T Consensus 92 dl~~~ll~~~~~~-~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 92 DLWEALMARAGKE-GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred HHHHHHHHHHHhc-CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4445555444433 345666667777789999998764 66655 456667777777788888877766653
No 442
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.13 E-value=1.2e+02 Score=31.43 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
.+...+|||||+|.+.. .....|.......+..-++++.++
T Consensus 114 ~~~~kVVIIDEad~ls~------~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK------SAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred cCCCeEEEEECccccCH------HHHHHHHHHHHhCCCCEEEEEEcC
Confidence 45678999999997752 223444333343333334445444
No 443
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=30.93 E-value=78 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.8
Q ss_pred ccEEEEecCCcccc
Q 016133 46 LNLVAIDEAHCISS 59 (394)
Q Consensus 46 l~~iVvDEaH~l~~ 59 (394)
-++|+|||+|.+..
T Consensus 106 ~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 106 GGVLFIDEAYSLAR 119 (261)
T ss_pred CCEEEEechhhhcc
Confidence 36899999999875
No 444
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=30.89 E-value=15 Score=34.52 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred cEEEeCCceecChHHHHHH---HhhccCCCccEEEEecCCccc
Q 016133 19 RLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS 58 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l---~~~~~~~~l~~iVvDEaH~l~ 58 (394)
+|+|+|..-++-.-....+ ....-...+.++||||||.++
T Consensus 168 dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 168 DIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
No 445
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=30.89 E-value=54 Score=25.34 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=40.9
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH------------HHHHHHHHHHhcCCCeEEEeccccccccC
Q 016133 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLND------------KARSSVLDDWISSRKQVVVATVAFGMGID 210 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~------------~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 210 (394)
.||.+.....+..+++.|......+....|.+-. ..+.+.+.+...+--.|++|||.=..|-.
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~ 75 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGEL 75 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHH
Confidence 3677888888999999987554556666665421 12244555555667789999997666643
No 446
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=30.88 E-value=1.1e+02 Score=25.14 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccc
Q 016133 153 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208 (394)
Q Consensus 153 ~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 208 (394)
+|...|+.|++.|.+.|+.+..+.-...... ...+. ....+++.|+..+.|
T Consensus 9 ~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~----~~~~~-~~~~~i~~~sT~~~g 59 (143)
T PF00258_consen 9 NTEKMAEAIAEGLRERGVEVRVVDLDDFDDS----PSDLS-EYDLLIFGVSTYGEG 59 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEGGGSCHH----HHHHC-TTSEEEEEEEEETTT
T ss_pred hHHHHHHHHHHHHHHcCCceeeechhhhhhh----hhhhh-hhceeeEeecccCCC
Confidence 5678888888889888987666654433322 33333 344577777777766
No 447
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.65 E-value=2.3e+02 Score=21.25 Aligned_cols=44 Identities=7% Similarity=0.172 Sum_probs=31.1
Q ss_pred ccEEEEeC------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 016133 146 TCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189 (394)
Q Consensus 146 ~~~IVF~~------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 189 (394)
.+++||.. ....|..+.+.|.+.|+....+.=....+.+..+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 47999976 567888999999999988766654444444444333
No 448
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.49 E-value=4e+02 Score=23.89 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
.....+..+++..+ .+..|||.+-..+..+...|++.|+.
T Consensus 163 ~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~~l~~~g~~ 202 (268)
T cd06270 163 GGYAAMQELLARGA-PFTAVFCANDEMAAGAISALREHGIS 202 (268)
T ss_pred HHHHHHHHHHhCCC-CCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34556666665543 35688888888888888888887654
No 449
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=30.37 E-value=3.3e+02 Score=22.99 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=51.8
Q ss_pred HHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC
Q 016133 135 DLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 212 (394)
Q Consensus 135 ~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 212 (394)
.+..++.+ ..+.+++|-|.+...++.|-+.|-...-....-|+..... .. ....|+|++.-- -=|-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~e~--------~~-~~qPIli~~~~~--~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAGEP--------PP-AGQPILIAWPGG--NPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCCCC--------CC-CCCCEEEEcCCC--CCCCC
Confidence 55555544 3577999999999999999999987655555666653311 11 234588887521 12445
Q ss_pred CccEEEEecCC
Q 016133 213 DVRLVCHFNIP 223 (394)
Q Consensus 213 ~v~~VI~~~~p 223 (394)
.++++|+...+
T Consensus 86 ~~~~lInl~d~ 96 (144)
T COG2927 86 RVDLLINLADE 96 (144)
T ss_pred ceeEEEecccc
Confidence 67788887654
No 450
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=30.19 E-value=29 Score=35.33 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=30.1
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 100 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~ 100 (394)
+..||+||||-+-+.... .-+.+..|. ....++||+|+-..-...+..
T Consensus 317 ~~RiIlDEAH~IK~R~sn---TArAV~~L~----tt~rw~LSGTPLQNrigElyS 364 (791)
T KOG1002|consen 317 FYRIILDEAHNIKDRQSN---TARAVFALE----TTYRWCLSGTPLQNRIGELYS 364 (791)
T ss_pred eeeeehhhhccccccccc---HHHHHHhhH----hhhhhhccCCcchhhHHHHHH
Confidence 566999999998765421 113333333 345788999987665554443
No 451
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=30.18 E-value=2.5e+02 Score=26.74 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=44.9
Q ss_pred cccEEEeCCce----ecChHHHHHHHh----hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEee
Q 016133 17 SLRLLYVTPEL----TATPGFMSKLKK----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 88 (394)
Q Consensus 17 ~~~il~~tPe~----v~tp~~~~~l~~----~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSA 88 (394)
..++.++.|+. +.... ...+.+ ....+..+++|||+||.+... .-..|.++.+..|+.-+++|.+
T Consensus 60 HPD~~~i~p~~~~~~I~idq-iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~------AaNaLLK~LEEPp~~~~fiL~~ 132 (290)
T PRK05917 60 HPDIHEFSPQGKGRLHSIET-PRAIKKQIWIHPYESPYKIYIIHEADRMTLD------AISAFLKVLEDPPQHGVIILTS 132 (290)
T ss_pred CCCEEEEecCCCCCcCcHHH-HHHHHHHHhhCccCCCceEEEEechhhcCHH------HHHHHHHHhhcCCCCeEEEEEe
Confidence 34676777873 22222 223322 223466889999999998642 2345656666666666666677
Q ss_pred cCChhHHHHHHH
Q 016133 89 TAAPKVQKDVME 100 (394)
Q Consensus 89 T~~~~~~~~i~~ 100 (394)
+-+..+...|..
T Consensus 133 ~~~~~ll~TI~S 144 (290)
T PRK05917 133 AKPQRLPPTIRS 144 (290)
T ss_pred CChhhCcHHHHh
Confidence 665555544443
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.07 E-value=1.4e+02 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=22.9
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
.-.+|+|||+|.+.... ...++....+..++++.+|..
T Consensus 92 ~~~vL~IDEi~~l~~~~---------q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ---------QDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHHH---------HHHHHHHhhcCcEEEEEeCCC
Confidence 45789999999875322 112333344456677767643
No 453
>COG1204 Superfamily II helicase [General function prediction only]
Probab=29.79 E-value=1.7e+02 Score=31.96 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=48.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHH---hCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc----ccccc-cC-CCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLS---AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV----AFGMG-ID-RKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~---~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~----~~~~G-iD-~p~v~ 215 (394)
++++|--|+++.-|++.++.++ ..|+++..++|+++..... -++.+|+|+|. .+.+- .+ +.+|+
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~-------l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~ 148 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER-------LARYDVIVTTPEKLDSLTRKRPSWIEEVD 148 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhh-------hccCCEEEEchHHhhHhhhcCcchhhccc
Confidence 4577777999999999999998 6799999999998744311 24678999994 22222 11 34677
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 149 lvV 151 (766)
T COG1204 149 LVV 151 (766)
T ss_pred EEE
Confidence 776
No 454
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=29.76 E-value=1e+02 Score=31.01 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=49.2
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC--CeEEEecc
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATV 203 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~ 203 (394)
=+|||.+-..-...-...|....+++..+++.|+..+|.+++-++...+ +++|--|+
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 6899999998888888999999999999999999999999999998654 55665553
No 455
>PRK08116 hypothetical protein; Validated
Probab=29.62 E-value=2.2e+02 Score=26.50 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCccEEEEecCCc--cccCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChh
Q 016133 44 GLLNLVAIDEAHC--ISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPK 93 (394)
Q Consensus 44 ~~l~~iVvDEaH~--l~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~ 93 (394)
...++|||||.+. ..+|. ...|..+.... .+.|+|+.|-..+.+
T Consensus 177 ~~~dlLviDDlg~e~~t~~~------~~~l~~iin~r~~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 177 VNADLLILDDLGAERDTEWA------REKVYNIIDSRYRKGLPTIVTTNLSLEE 224 (268)
T ss_pred cCCCEEEEecccCCCCCHHH------HHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 4578999999953 34444 12333333322 356666666554444
No 456
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=29.00 E-value=4.3e+02 Score=25.01 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=38.8
Q ss_pred HHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEeccccccccC
Q 016133 136 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGID 210 (394)
Q Consensus 136 l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD 210 (394)
+...|...+..++.||-+|.+.++++++.+.+.+..+...... . .... ...+||.|..++|--+
T Consensus 141 v~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~--~---------~~~~~~~dliINaTp~Gm~~~ 205 (283)
T COG0169 141 VAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALA--D---------LEGLEEADLLINATPVGMAGP 205 (283)
T ss_pred HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccc--c---------cccccccCEEEECCCCCCCCC
Confidence 3333444444578888899999999999998765411111110 0 0111 4788998877777654
No 457
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=28.89 E-value=1.1e+02 Score=32.29 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=24.7
Q ss_pred CcccEEEeCCceecChHHHHHHHh-----h-ccCCCccEEEEecCCcccc
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKK-----I-HSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~-----~-~~~~~l~~iVvDEaH~l~~ 59 (394)
+..+++|++.+.+... +...+.. . .....+++|+||+.|.+..
T Consensus 343 ~g~~V~Yitaeef~~e-l~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 343 PGTRVRYVSSEEFTNE-FINSIRDGKGDSFRRRYREMDILLVDDIQFLED 391 (617)
T ss_pred CCCeEEEeeHHHHHHH-HHHHHHhccHHHHHHHhhcCCEEEEehhccccC
Confidence 3478999888744321 1111100 0 0123589999999998863
No 458
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=28.89 E-value=2e+02 Score=22.52 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCccEEEEeCcH-----HHHHHHHHHHHhCCC---ceEEecCCCC
Q 016133 144 GDTCAIVYCLER-----TTCDELSAYLSAGGI---SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~-----~~~~~l~~~L~~~g~---~~~~~h~~l~ 180 (394)
...++|+||.+. ..+..+...|.+.|+ .+..+.||+.
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 345789999752 345566666766775 4666778763
No 459
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=28.79 E-value=1.5e+02 Score=29.56 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 6 KIYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.+.+.+.+..+--|++=|- .-.+|.|+.-|++..+...+ ++|+||+.|
T Consensus 195 ~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~v-l~I~DEV~t 250 (433)
T KOG1401|consen 195 ALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGV-LLIFDEVQT 250 (433)
T ss_pred HHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCc-eEEeehhhh
Confidence 345556666555778888886 34689999999988877666 689999998
No 460
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.75 E-value=1.5e+02 Score=28.69 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=38.4
Q ss_pred ChHHHHHHHhhccCCC-ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 016133 30 TPGFMSKLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 99 (394)
Q Consensus 30 tp~~~~~l~~~~~~~~-l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~ 99 (394)
++.-+.++..+..... .++|++|-|| ||. ...+..+..+++.+|...++.= -+.+.+....+.
T Consensus 92 t~e~~~r~~~lv~a~~~~d~i~~D~ah-----g~s-~~~~~~i~~i~~~~p~~~vi~G-nV~t~e~a~~l~ 155 (321)
T TIGR01306 92 KACEYEFVTQLAEEALTPEYITIDIAH-----GHS-NSVINMIKHIKTHLPDSFVIAG-NVGTPEAVRELE 155 (321)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeCcc-----Cch-HHHHHHHHHHHHhCCCCEEEEe-cCCCHHHHHHHH
Confidence 4554555555554442 6999999999 553 5556778888888876444433 244555444433
No 461
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.61 E-value=83 Score=31.91 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCccE-EEEecCCccccCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 44 GLLNL-VAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 44 ~~l~~-iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
.+..+ +.+||||.+++.. -..-..++..+.+.. .++=+.+.|-++.. +-+.+..+|+.
T Consensus 253 dkPklVfFfDEAHLLF~da--~kall~~ieqvvrLIRSKGVGv~fvTQ~P~D-iP~~VL~QLGn 313 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDA--PKALLDKIEQVVRLIRSKGVGVYFVTQNPTD-IPDDVLGQLGN 313 (502)
T ss_pred CCceEEEEEechhhhhcCC--CHHHHHHHHHHHHHhhccCceEEEEeCCCCC-CCHHHHHhhhh
Confidence 34455 6699999988643 222233343333322 26667777766432 22344555543
No 462
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.61 E-value=1.3e+02 Score=24.01 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHH
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 164 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~ 164 (394)
...+..+.+.+...+ +|+++||.|-..+-.++..
T Consensus 72 ~~~v~~f~~~l~~~~-~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 72 EEDVEAFADALESLP-KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHHHHTTT-TSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCEEEECCCChhHHHHHHH
Confidence 456677777777764 5899999998877666543
No 463
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=28.61 E-value=26 Score=37.71 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.1
Q ss_pred ccEEEEecCCcccc
Q 016133 46 LNLVAIDEAHCISS 59 (394)
Q Consensus 46 l~~iVvDEaH~l~~ 59 (394)
.+++||||||.+.+
T Consensus 247 ~~~lViDEAH~L~d 260 (697)
T PRK11747 247 NLLYVLDEGHHLPD 260 (697)
T ss_pred CCEEEEECccchHH
Confidence 56799999999875
No 464
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=28.55 E-value=83 Score=28.22 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=23.9
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCCh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAP 92 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~ 92 (394)
..++|||||+|.+..+. . ..|..+.... .+..++++|++.++
T Consensus 90 ~~~~liiDdi~~l~~~~---~---~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ---Q---IALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH---H---HHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 35789999999886433 1 2232222221 23445777777554
No 465
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.54 E-value=2.7e+02 Score=21.35 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCccEEEEeC------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 016133 135 DLCSVLKANGDTCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189 (394)
Q Consensus 135 ~l~~~l~~~~~~~~IVF~~------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 189 (394)
.+..++.. .+++||.. +.-.|..+.+.|.+.|++...+.=.-.++.+..+.+
T Consensus 4 ~v~~~i~~---~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~ 61 (97)
T TIGR00365 4 RIKEQIKE---NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKE 61 (97)
T ss_pred HHHHHhcc---CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 34444443 47999964 467788999999999988766654444555554433
No 466
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=28.49 E-value=2.4e+02 Score=26.56 Aligned_cols=80 Identities=10% Similarity=-0.082 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 209 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 209 (394)
.+......++|+. .-+|+|...+.+..+-..+.-. -+...||..-..+....+++....|+. |.+.+|+..=||
T Consensus 13 ~Dit~Ral~~L~~----~d~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~I 86 (276)
T TIGR00096 13 EDITRRALELLAC----VDLFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLI 86 (276)
T ss_pred HHHhHHHHHHHHh----CCEEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCc
Confidence 4444455556654 3489999888888777776432 245677776666666777777888865 888999998888
Q ss_pred CCCCcc
Q 016133 210 DRKDVR 215 (394)
Q Consensus 210 D~p~v~ 215 (394)
.-|+-.
T Consensus 87 SDPG~~ 92 (276)
T TIGR00096 87 SDPGHL 92 (276)
T ss_pred CCccHH
Confidence 877744
No 467
>PF12846 AAA_10: AAA-like domain
Probab=28.41 E-value=63 Score=29.93 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=13.6
Q ss_pred CCccEEEEecCCccccC
Q 016133 44 GLLNLVAIDEAHCISSW 60 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~ 60 (394)
..-.++++||||.+...
T Consensus 219 ~~~~~i~iDEa~~~~~~ 235 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSN 235 (304)
T ss_pred CceEEEEeCCccccccc
Confidence 44567899999998865
No 468
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=28.38 E-value=63 Score=28.29 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=22.1
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
.+++|||||=.+. -| . +.+.....+.++||.|..
T Consensus 91 ~DlliVDEAAaIp------~p---~---L~~ll~~~~~vv~stTi~ 124 (177)
T PF05127_consen 91 ADLLIVDEAAAIP------LP---L---LKQLLRRFPRVVFSTTIH 124 (177)
T ss_dssp -SCEEECTGGGS-------HH---H---HHHHHCCSSEEEEEEEBS
T ss_pred CCEEEEechhcCC------HH---H---HHHHHhhCCEEEEEeecc
Confidence 5899999999764 22 2 333344567888888864
No 469
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=28.36 E-value=85 Score=26.71 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=31.0
Q ss_pred CcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCC
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 62 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~ 62 (394)
+++..+++|||..........+....-+..+..++||=. +.+.|.
T Consensus 91 ~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v--~aedg~ 135 (158)
T COG1019 91 PDFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYV--LAEDGK 135 (158)
T ss_pred CceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehh--hhhcCC
Confidence 368899999996654445555555555677999999844 555564
No 470
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=28.16 E-value=1e+02 Score=31.48 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=29.2
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
++..+++-|- ....++++..+.++.....+ ++|+||+|+
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~-lLI~DEV~t 290 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGA-LLVFDEVMT 290 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 4778888886 23457899888887766554 789999996
No 471
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.07 E-value=2e+02 Score=23.20 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=37.8
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
++|-+.+.+.+....+...+.|.++..-..|+++++...+.+ +. .++.+++|.+
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a-~~~~vl~a~N 123 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LA-KKIPVLIAPN 123 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HT-TTSEEEE-SS
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hh-ccCCEEEeCC
Confidence 666666888898889988888999888888887776555444 33 3488998875
No 472
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.90 E-value=83 Score=32.09 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=22.3
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEE
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~l 86 (394)
+..++|+||+|...+ +..|..|..-....++.+++.+
T Consensus 123 ~~~~~i~DE~h~~~~-----~~~~~~l~~g~~~r~~pl~~~I 159 (477)
T PF03354_consen 123 NPSLAIFDELHAHKD-----DELYDALESGMGARPNPLIIII 159 (477)
T ss_pred CCceEEEeCCCCCCC-----HHHHHHHHhhhccCCCceEEEE
Confidence 378999999997653 2344454444444445555544
No 473
>PRK08297 L-lysine aminotransferase; Provisional
Probab=27.78 E-value=98 Score=31.27 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 10 DLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 10 ~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.....++-.+++-|- .+..++++..+.++.....+ ++|+||+++
T Consensus 218 ~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~-llI~DEV~t 269 (443)
T PRK08297 218 AFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDA-LLIFDEVQT 269 (443)
T ss_pred HHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEechhh
Confidence 34434446888888885 33457899999888776655 689999997
No 474
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=27.67 E-value=4.9e+02 Score=24.02 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCCEEEEeecCChhHHHH--HHHHhCCC--CCE-----EE-----ecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCC-
Q 016133 80 DVPILALTATAAPKVQKD--VMESLCLQ--NPL-----VL-----KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG- 144 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~--i~~~l~~~--~~~-----~~-----~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~- 144 (394)
+++++++|+-.++..... -.+.+++. +.. .+ .....+..+++.-........+-..|..++...+
T Consensus 97 ~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~ 176 (252)
T PF11019_consen 97 GIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQ 176 (252)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCC
Confidence 789999999864432211 12334432 111 11 1122333344433332223344566666665532
Q ss_pred CccEEEEe-CcHHHHHHHHHHHHhCCCceEEecC
Q 016133 145 DTCAIVYC-LERTTCDELSAYLSAGGISCAAYHA 177 (394)
Q Consensus 145 ~~~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~ 177 (394)
..+.|||+ ++.+....+...++..|+....+|=
T Consensus 177 ~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 177 SPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence 22356665 6788899999999999888765553
No 475
>PRK01172 ski2-like helicase; Provisional
Probab=27.59 E-value=1.1e+02 Score=32.78 Aligned_cols=67 Identities=22% Similarity=0.167 Sum_probs=46.4
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-cCCCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-iD~p~v~ 215 (394)
+.++|+.++++.-+.+.++.+++ .|..+....|+.+...+ +. ...+|+|+|.- +..+ ..+.+++
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v~ 137 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------FI-KRYDVVILTSEKADSLIHHDPYIINDVG 137 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------hh-ccCCEEEECHHHHHHHHhCChhHHhhcC
Confidence 45788889999999999888764 47788888888764321 11 35689999971 2222 2356788
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 138 lvV 140 (674)
T PRK01172 138 LIV 140 (674)
T ss_pred EEE
Confidence 877
No 476
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=27.41 E-value=2.4e+02 Score=20.26 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.8
Q ss_pred EEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 016133 149 IVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189 (394)
Q Consensus 149 IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 189 (394)
.||. ++...|..+...|.+.|+....++-...+..+.+..+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~ 43 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQ 43 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHH
Confidence 3454 5667788888899999988888877777766665444
No 477
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=27.27 E-value=5.4e+02 Score=27.40 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCC
Q 016133 134 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 213 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~ 213 (394)
..+..-++..+.+.+.|-|.|-..|..+-..|++... ...-...-+.|..|+. |--.-+..|+-+
T Consensus 644 ~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~~~----------~r~I~k~nq~f~~~~~---vipvy~aKGlEF-- 708 (747)
T COG3973 644 PDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREKDS----------QRTIAKENQRFHHGSD---VIPVYDAKGLEF-- 708 (747)
T ss_pred HHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhcch----------hhHHHhhcccccCCce---EEEeeeccccee--
Confidence 3344445566667788999999999999999986421 1111111223444432 223446677765
Q ss_pred ccEEEEecC------CCCHHHHHHHHhhc
Q 016133 214 VRLVCHFNI------PKSMEAFYQESGRA 236 (394)
Q Consensus 214 v~~VI~~~~------p~s~~~y~Qr~GRa 236 (394)
++||.||+ |.....+|=.+-||
T Consensus 709 -D~viv~d~s~~e~te~~~r~LYva~TRA 736 (747)
T COG3973 709 -DHVIVVDPSIVEETEQDLRDLYVAVTRA 736 (747)
T ss_pred -eeEEEecchhhcccccchhhHHHHHHHH
Confidence 56676665 44455555555555
No 478
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=27.16 E-value=96 Score=31.15 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=32.6
Q ss_pred HhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 11 LDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 11 l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.....++-.+++.|- +...++++..+.++.....+ ++|+||+++
T Consensus 212 ~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~t 262 (431)
T TIGR03251 212 FAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDA-LLIFDEVQT 262 (431)
T ss_pred HHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecchh
Confidence 3333446788888885 33567899999887776554 689999997
No 479
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=27.04 E-value=93 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=29.2
Q ss_pred cccEEEeCCce------ecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPEL------TATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe~------v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
++-.+++-|-. +..++++..+.++.....+ ++|+||+|+
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~-llI~DEV~t 275 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGA-LLILDEVQT 275 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-EEEecccee
Confidence 46677777762 4567899988887766555 789999995
No 480
>PRK06756 flavodoxin; Provisional
Probab=27.03 E-value=3.5e+02 Score=22.24 Aligned_cols=71 Identities=8% Similarity=0.211 Sum_probs=41.7
Q ss_pred EEEEe----CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC
Q 016133 148 AIVYC----LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 223 (394)
Q Consensus 148 ~IVF~----~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p 223 (394)
.|||. +|.+.++.+++.|.+.|..+..++-.-.+. ...+.+. -.|+++|+..+.| .+|
T Consensus 5 ~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-----~~~~~~~-d~vi~gspt~~~g------------~~p 66 (148)
T PRK06756 5 VMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPE-----ASILEQY-DGIILGAYTWGDG------------DLP 66 (148)
T ss_pred EEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCC-----HHHHhcC-CeEEEEeCCCCCC------------CCc
Confidence 56665 566667777777777787766554321110 1223322 3477777666544 246
Q ss_pred CCHHHHHHHHhhc
Q 016133 224 KSMEAFYQESGRA 236 (394)
Q Consensus 224 ~s~~~y~Qr~GRa 236 (394)
..+..|+....+.
T Consensus 67 ~~~~~fl~~l~~~ 79 (148)
T PRK06756 67 DDFLDFYDAMDSI 79 (148)
T ss_pred HHHHHHHHHHhcC
Confidence 6788888887543
No 481
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=27.01 E-value=1.1e+02 Score=30.75 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=27.9
Q ss_pred cccEEEeCCc--eecChHHHHHHHhhccCCCccEEEEecCCcc
Q 016133 17 SLRLLYVTPE--LTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 57 (394)
Q Consensus 17 ~~~il~~tPe--~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l 57 (394)
++..+++-|- +...++++..+.++..... .++|+||+|+=
T Consensus 187 ~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g-~lLI~DEv~tG 228 (431)
T PRK06209 187 RIACVILEPATADEPQDGFLHEVRRLCHENG-ALFILDEMITG 228 (431)
T ss_pred CEEEEEEccccCCCCCHHHHHHHHHHHHHcC-CEEEEEccccc
Confidence 4667777665 2445678888877776554 37899999953
No 482
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.98 E-value=4.8e+02 Score=24.28 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC--CCceEEec-CCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYH-AGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h-~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
+....|.+..... +.++-++-.+...+++.+..|++. ++.+..+| |-.++.+.+.++++....+.+||.
T Consensus 95 Dl~~~Ll~~a~~~-~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 95 DLVEALLKRAAEE-GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred HHHHHHHHHhCcc-CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 3444444443332 345555566777888888899876 45665555 777887778899999888777663
No 483
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=26.73 E-value=91 Score=31.22 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=29.9
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
++-.+++-|- .+.+++++..+.++.....+ ++|+||+|+
T Consensus 198 ~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~-llI~DEV~t 242 (425)
T PRK09264 198 LPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDI-LLIVDDIQA 242 (425)
T ss_pred ceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCc-EEEEechhh
Confidence 4667787775 24577899999887776655 789999996
No 484
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=26.10 E-value=4.2e+02 Score=22.78 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=46.1
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccC---CCCccEEEE
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID---RKDVRLVCH 219 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD---~p~v~~VI~ 219 (394)
..+.+++|.-...-....++..|.+.|..+...+...+ +..+ .+ .+.+|+|++.....=|+ ++.-.+||+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--~l~~---~l--~~aDiVIsat~~~~ii~~~~~~~~~viID 114 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--NLKE---HT--KQADIVIVAVGKPGLVKGDMVKPGAVVID 114 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--hHHH---HH--hhCCEEEEcCCCCceecHHHccCCeEEEE
Confidence 34556666555544456699999999887777776532 2221 12 23555555433322233 334468999
Q ss_pred ecCCCCHH
Q 016133 220 FNIPKSME 227 (394)
Q Consensus 220 ~~~p~s~~ 227 (394)
...|.+++
T Consensus 115 la~prdvd 122 (168)
T cd01080 115 VGINRVPD 122 (168)
T ss_pred ccCCCccc
Confidence 99998887
No 485
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.08 E-value=92 Score=29.95 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeec
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTAT 89 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT 89 (394)
..+..||+||||.|.. .....|.+....++ .+.+++.+--
T Consensus 128 ~~fKiiIlDEcdsmts------daq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTS------DAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CcceEEEEechhhhhH------HHHHHHHHHHhccccceEEEEEcCC
Confidence 3468899999998874 22234555555554 4555655544
No 486
>PLN02388 phosphopantetheine adenylyltransferase
Probab=25.93 E-value=77 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.5
Q ss_pred CcccEEEeCCceecChHHHHHHHhhccCCCccEEEEe
Q 016133 16 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 52 (394)
Q Consensus 16 ~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvD 52 (394)
++++.|++|||....-..+..++....+..|.+++||
T Consensus 108 ~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~ 144 (177)
T PLN02388 108 ENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVD 144 (177)
T ss_pred CCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEE
Confidence 5688999999977776677777666666677777664
No 487
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.83 E-value=91 Score=30.52 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 3457999999988899999999999986 778899874
No 488
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.80 E-value=3.1e+02 Score=21.02 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=39.5
Q ss_pred cEEEEeCcHH----H-HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc-CCCCc
Q 016133 147 CAIVYCLERT----T-CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI-DRKDV 214 (394)
Q Consensus 147 ~~IVF~~s~~----~-~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi-D~p~v 214 (394)
++++-|.+=- . +..+.+.|.++|+.+...|..++.-. ... ...+++|+|.-+...+ |+|.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~------~~~-~~~D~iv~t~~~~~~~~~ip~~ 70 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE------TYM-DGVHLICTTARVDRSFGDIPLV 70 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh------hhc-CCCCEEEECCccccccCCCCEE
Confidence 5788886532 2 46667788889999888886654321 111 4578999997666555 35543
No 489
>PHA02558 uvsW UvsW helicase; Provisional
Probab=25.79 E-value=1.9e+02 Score=29.72 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=40.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC----ceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc--ccccc-cCCCCccE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMG-IDRKDVRL 216 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~G-iD~p~v~~ 216 (394)
...++||.++|++-++++.+.|.+.+. .+..+.+|.... ....|+|+|. +...+ ..+.++.+
T Consensus 157 ~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~ 225 (501)
T PHA02558 157 YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGM 225 (501)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCE
Confidence 344899999999999999999987542 233344443211 3467999993 22222 13457777
Q ss_pred EE
Q 016133 217 VC 218 (394)
Q Consensus 217 VI 218 (394)
||
T Consensus 226 iI 227 (501)
T PHA02558 226 VI 227 (501)
T ss_pred EE
Confidence 77
No 490
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=25.68 E-value=1.3e+02 Score=24.28 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.3
Q ss_pred CCccEEEEeCcHHH---------HHHHHHHHHh---CCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTT---------CDELSAYLSA---GGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~---------~~~l~~~L~~---~g~~~~~~h~~l~ 180 (394)
....+|||+.+-.. +..+++.|.. .+.++..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 55689999986654 6777888877 4567889999864
No 491
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=25.57 E-value=84 Score=29.94 Aligned_cols=41 Identities=7% Similarity=0.090 Sum_probs=23.8
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
...+|||||+|.+... ....|..+....++...++++++.+
T Consensus 125 ~~~vlilDe~~~l~~~------~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 125 DYKTILLDNAEALRED------AQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred CCcEEEEeCcccCCHH------HHHHHHHHHHhccCCCeEEEEeCCh
Confidence 3568999999987532 1234444555555434455555533
No 492
>PF13245 AAA_19: Part of AAA domain
Probab=25.56 E-value=1.7e+02 Score=21.51 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=24.2
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHA 177 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~ 177 (394)
+.+++|.+.|+..++.+.+.| ..+.. +..+|+
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 668999999999999999999 33333 555554
No 493
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=25.39 E-value=51 Score=36.81 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.3
Q ss_pred CCccEEEEecCCcccc
Q 016133 44 GLLNLVAIDEAHCISS 59 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~ 59 (394)
...+++||||||.+.+
T Consensus 454 p~~~~lViDEAH~l~d 469 (928)
T PRK08074 454 PSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCeEEEECCchHHH
Confidence 3468999999999874
No 494
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=25.39 E-value=1.1e+02 Score=30.82 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=29.0
Q ss_pred cccEEEeCCce------ecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPEL------TATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe~------v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
++-.+++-|-. +..++++..+.++...... ++|+||+|+
T Consensus 224 ~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~-llI~DEV~t 268 (442)
T TIGR03372 224 DVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGA-LLILDEVQT 268 (442)
T ss_pred cEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEeeccc
Confidence 57788887762 4567899888877765544 689999996
No 495
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=25.39 E-value=1.7e+02 Score=26.17 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=11.4
Q ss_pred ccEEEEecCCccc
Q 016133 46 LNLVAIDEAHCIS 58 (394)
Q Consensus 46 l~~iVvDEaH~l~ 58 (394)
++.|.||||+.+.
T Consensus 83 ~~~v~IDEaQF~~ 95 (201)
T COG1435 83 VDCVLIDEAQFFD 95 (201)
T ss_pred cCEEEEehhHhCC
Confidence 7899999999765
No 496
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.34 E-value=2.2e+02 Score=19.21 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=34.8
Q ss_pred EEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 016133 149 IVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199 (394)
Q Consensus 149 IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iL 199 (394)
++|. .+...|..+.+.|.+.|++...+.=...++.++.+.+.......+.+
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v 53 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQV 53 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEE
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEE
Confidence 4454 56678999999999999888777777666666666655433334433
No 497
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=25.28 E-value=73 Score=29.26 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=12.4
Q ss_pred CCccEEEEecCCcccc
Q 016133 44 GLLNLVAIDEAHCISS 59 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~ 59 (394)
+...+|||||+|.+..
T Consensus 122 ~~~~vliiDe~~~l~~ 137 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP 137 (269)
T ss_pred CCCeEEEEECcccCCH
Confidence 4456899999998763
No 498
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=25.27 E-value=3.8e+02 Score=21.96 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHhCCCccEEEEeCc--HHHHHHHHHHHHhCCCceEEecCCCCHHH-HHHHHHHHh--cCCCeEEEecc
Q 016133 136 LCSVLKANGDTCAIVYCLE--RTTCDELSAYLSAGGISCAAYHAGLNDKA-RSSVLDDWI--SSRKQVVVATV 203 (394)
Q Consensus 136 l~~~l~~~~~~~~IVF~~s--~~~~~~l~~~L~~~g~~~~~~h~~l~~~~-R~~~~~~f~--~g~~~iLVaT~ 203 (394)
...+++. +...+++..++ ....+.+...|...+..+..+..+++..+ -...++.+. .+.++++|...
T Consensus 17 a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 17 ARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred HHHHHhc-CceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344444 44456666666 68888899999988888888988876543 334444444 47788877654
No 499
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=25.27 E-value=97 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
..+|+|||+|.+... ....|..+....+....+.++++...
T Consensus 103 ~~vviiDe~~~l~~~------~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 103 FKIIFLDEADNLTSD------AQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred ceEEEEeCcccCCHH------HHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 558999999987531 12344444444444444555554433
No 500
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.13 E-value=6e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCceEEecCC------CCHHHHHHHHHHHh---cCCCeEEEecc
Q 016133 158 CDELSAYLSAGGISCAAYHAG------LNDKARSSVLDDWI---SSRKQVVVATV 203 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~------l~~~~R~~~~~~f~---~g~~~iLVaT~ 203 (394)
.+.+.++|...|+.-..+-|. |+.+||.++++... .|++.|++.+.
T Consensus 31 l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~ 85 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT 85 (309)
T ss_pred HHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 344455555555554444443 56677777666554 46666776654
Done!