Query 016133
Match_columns 394
No_of_seqs 467 out of 2466
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 3.9E-56 1.3E-60 459.9 30.6 310 3-327 122-435 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 2E-55 6.9E-60 449.5 31.4 304 3-326 103-406 (523)
3 3sqw_A ATP-dependent RNA helic 100.0 1.4E-36 4.6E-41 314.3 25.0 240 18-264 151-410 (579)
4 3i5x_A ATP-dependent RNA helic 100.0 1.8E-36 6.3E-41 312.1 24.5 240 18-264 202-461 (563)
5 2db3_A ATP-dependent RNA helic 100.0 8.2E-36 2.8E-40 298.1 26.0 227 28-260 184-416 (434)
6 2i4i_A ATP-dependent RNA helic 100.0 7.3E-35 2.5E-39 288.4 24.8 236 18-264 152-395 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 2.8E-34 9.7E-39 283.9 25.7 230 28-264 160-395 (410)
8 3eiq_A Eukaryotic initiation f 100.0 1.5E-34 5.2E-39 285.6 22.7 236 18-264 160-399 (414)
9 1s2m_A Putative ATP-dependent 100.0 4.2E-34 1.5E-38 281.5 24.8 234 18-265 140-378 (400)
10 3fht_A ATP-dependent RNA helic 100.0 2.1E-33 7.2E-38 277.1 24.5 231 27-264 147-392 (412)
11 1xti_A Probable ATP-dependent 100.0 4.1E-33 1.4E-37 273.3 26.1 232 18-262 129-368 (391)
12 3pey_A ATP-dependent RNA helic 100.0 2.7E-33 9.4E-38 274.3 24.7 228 28-262 126-367 (395)
13 1hv8_A Putative ATP-dependent 100.0 1.4E-32 4.6E-37 266.7 27.6 215 41-264 143-357 (367)
14 4gl2_A Interferon-induced heli 100.0 6E-34 2E-38 300.5 13.3 164 145-312 400-586 (699)
15 4a4z_A Antiviral helicase SKI2 100.0 1.9E-32 6.5E-37 297.4 24.2 276 42-325 144-576 (997)
16 1fuu_A Yeast initiation factor 100.0 3E-34 1E-38 281.4 5.3 216 41-262 158-376 (394)
17 2z0m_A 337AA long hypothetical 100.0 1E-31 3.4E-36 257.8 20.9 205 42-261 126-331 (337)
18 3oiy_A Reverse gyrase helicase 100.0 9.7E-32 3.3E-36 266.5 18.2 236 3-262 105-373 (414)
19 3fho_A ATP-dependent RNA helic 100.0 9.8E-33 3.3E-37 281.1 11.2 234 18-263 236-482 (508)
20 3fmp_B ATP-dependent RNA helic 100.0 1.9E-33 6.4E-38 284.2 4.2 228 27-261 214-456 (479)
21 2ykg_A Probable ATP-dependent 100.0 1.3E-30 4.4E-35 274.9 17.8 187 131-326 380-587 (696)
22 3l9o_A ATP-dependent RNA helic 100.0 3.5E-29 1.2E-33 274.2 19.9 216 43-264 288-610 (1108)
23 2hjv_A ATP-dependent RNA helic 100.0 3.9E-28 1.3E-32 210.2 20.5 151 113-264 4-154 (163)
24 2p6r_A Afuhel308 helicase; pro 100.0 3.4E-28 1.2E-32 256.8 23.4 204 43-255 136-391 (702)
25 2xgj_A ATP-dependent RNA helic 100.0 4.8E-28 1.6E-32 263.1 25.0 217 41-264 188-512 (1010)
26 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-27 4.7E-32 252.7 27.7 219 18-254 122-410 (715)
27 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-28 8.7E-33 250.0 19.8 124 132-257 373-513 (556)
28 2rb4_A ATP-dependent RNA helic 100.0 9.2E-28 3.1E-32 210.3 20.0 149 116-264 5-159 (175)
29 1wp9_A ATP-dependent RNA helic 100.0 1.7E-27 6E-32 238.2 24.4 124 132-256 344-479 (494)
30 2zj8_A DNA helicase, putative 100.0 1.2E-27 4.2E-32 253.3 23.8 221 18-255 115-390 (720)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-28 5E-33 266.5 16.7 123 132-256 614-753 (936)
32 4ddu_A Reverse gyrase; topoiso 100.0 3.2E-28 1.1E-32 266.5 19.5 239 3-263 162-501 (1104)
33 3eaq_A Heat resistant RNA depe 100.0 1.7E-27 5.8E-32 215.2 18.9 137 129-265 15-151 (212)
34 1fuk_A Eukaryotic initiation f 100.0 1.7E-27 5.6E-32 206.6 17.1 135 130-264 15-149 (165)
35 3tbk_A RIG-I helicase domain; 100.0 5.7E-28 2E-32 247.0 16.5 125 132-258 372-513 (555)
36 1t5i_A C_terminal domain of A 100.0 3.9E-27 1.3E-31 205.8 18.8 134 130-263 16-150 (172)
37 1yks_A Genome polyprotein [con 100.0 2.3E-28 8E-33 244.3 11.5 194 42-262 96-312 (440)
38 2eyq_A TRCF, transcription-rep 99.9 1.1E-26 3.7E-31 255.7 24.8 226 3-253 694-923 (1151)
39 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.1E-27 2.1E-31 207.0 18.3 149 115-264 16-165 (185)
40 1gm5_A RECG; helicase, replica 99.9 2.9E-28 9.9E-33 257.5 11.4 227 3-253 459-698 (780)
41 2jlq_A Serine protease subunit 99.9 1.6E-27 5.6E-32 239.0 14.9 197 28-251 92-310 (451)
42 2p6n_A ATP-dependent RNA helic 99.9 1.3E-26 4.5E-31 205.9 18.0 157 104-262 12-172 (191)
43 2whx_A Serine protease/ntpase/ 99.9 4.7E-27 1.6E-31 243.5 15.4 195 41-262 273-491 (618)
44 2xau_A PRE-mRNA-splicing facto 99.9 6.3E-27 2.2E-31 248.3 16.0 218 27-254 189-445 (773)
45 4a2q_A RIG-I, retinoic acid in 99.9 1.7E-26 5.9E-31 247.0 19.4 124 132-257 614-754 (797)
46 1gku_B Reverse gyrase, TOP-RG; 99.9 2.3E-27 8E-32 259.4 10.7 220 28-264 160-466 (1054)
47 2wv9_A Flavivirin protease NS2 99.9 9.4E-27 3.2E-31 243.0 14.2 193 41-260 328-544 (673)
48 3i32_A Heat resistant RNA depe 99.9 6E-26 2E-30 215.1 18.3 136 130-265 13-148 (300)
49 4f92_B U5 small nuclear ribonu 99.9 8.7E-26 3E-30 255.6 21.1 271 28-303 1025-1364(1724)
50 1tf5_A Preprotein translocase 99.9 5.7E-26 2E-30 237.0 17.9 124 129-254 414-547 (844)
51 2yjt_D ATP-dependent RNA helic 99.9 3.9E-28 1.3E-32 211.7 0.0 145 118-262 3-147 (170)
52 3o8b_A HCV NS3 protease/helica 99.9 2.2E-26 7.5E-31 237.6 12.5 195 27-256 301-518 (666)
53 2z83_A Helicase/nucleoside tri 99.9 6.9E-27 2.4E-31 235.0 8.5 184 37-252 104-313 (459)
54 2oca_A DAR protein, ATP-depend 99.9 1E-26 3.4E-31 236.6 8.2 216 17-250 204-453 (510)
55 2v6i_A RNA helicase; membrane, 99.9 5.9E-26 2E-30 226.4 13.2 187 37-250 85-288 (431)
56 3dmq_A RNA polymerase-associat 99.9 2E-25 6.9E-30 242.4 17.9 120 131-250 489-611 (968)
57 1c4o_A DNA nucleotide excision 99.9 4.8E-25 1.7E-29 230.5 19.9 202 46-261 326-559 (664)
58 3h1t_A Type I site-specific re 99.9 4.2E-25 1.4E-29 228.7 17.4 227 17-251 274-557 (590)
59 2d7d_A Uvrabc system protein B 99.9 4.8E-25 1.7E-29 230.4 17.1 170 80-261 386-565 (661)
60 3rc3_A ATP-dependent RNA helic 99.9 2.5E-24 8.5E-29 224.3 21.7 202 43-266 237-458 (677)
61 4f92_B U5 small nuclear ribonu 99.9 6.7E-25 2.3E-29 248.4 15.8 218 43-266 205-487 (1724)
62 2fwr_A DNA repair protein RAD2 99.9 2.9E-25 9.8E-30 223.7 9.4 113 131-248 335-448 (472)
63 2fsf_A Preprotein translocase 99.9 8E-24 2.7E-28 220.4 17.4 124 129-254 423-585 (853)
64 1nkt_A Preprotein translocase 99.9 4.8E-23 1.6E-27 214.9 22.8 124 129-254 442-619 (922)
65 1z63_A Helicase of the SNF2/RA 99.9 4.6E-23 1.6E-27 209.0 17.4 119 134-252 328-453 (500)
66 3jux_A Protein translocase sub 99.9 1.1E-21 3.8E-26 200.8 26.9 167 82-254 411-589 (822)
67 1z3i_X Similar to RAD54-like; 99.9 5.9E-21 2E-25 199.4 23.5 110 143-252 414-528 (644)
68 3mwy_W Chromo domain-containin 99.8 2.7E-20 9.4E-25 198.9 16.4 120 133-252 558-684 (800)
69 1z5z_A Helicase of the SNF2/RA 99.8 3.7E-19 1.2E-23 166.3 10.9 123 130-252 95-224 (271)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3E-17 1E-21 177.9 16.6 105 145-250 537-707 (1038)
71 2ipc_A Preprotein translocase 99.0 9.7E-08 3.3E-12 100.2 23.4 165 82-254 380-700 (997)
72 3fe2_A Probable ATP-dependent 98.8 7.6E-09 2.6E-13 94.2 7.4 84 18-113 153-238 (242)
73 3ly5_A ATP-dependent RNA helic 98.8 8.2E-09 2.8E-13 95.4 7.0 74 18-102 177-254 (262)
74 3iuy_A Probable ATP-dependent 98.8 1.2E-08 4E-13 91.9 7.7 77 28-110 148-226 (228)
75 3bor_A Human initiation factor 98.7 1.5E-08 5.2E-13 92.0 7.2 78 28-111 154-233 (237)
76 1q0u_A Bstdead; DEAD protein, 98.7 1.2E-08 4.3E-13 91.2 6.3 84 28-118 131-217 (219)
77 2pl3_A Probable ATP-dependent 98.6 4.6E-08 1.6E-12 88.5 7.8 65 41-112 167-232 (236)
78 3dkp_A Probable ATP-dependent 98.6 4.1E-08 1.4E-12 89.4 6.6 82 28-113 154-241 (245)
79 2vl7_A XPD; helicase, unknown 98.6 1.5E-07 5.2E-12 95.9 10.9 110 134-250 374-519 (540)
80 3ber_A Probable ATP-dependent 98.6 6.3E-08 2.2E-12 88.7 7.3 82 18-112 162-247 (249)
81 2gxq_A Heat resistant RNA depe 98.6 7.2E-08 2.5E-12 85.1 7.4 80 19-111 122-204 (207)
82 1wrb_A DJVLGB; RNA helicase, D 98.6 5.1E-08 1.8E-12 89.2 6.6 86 18-113 151-240 (253)
83 3fmo_B ATP-dependent RNA helic 98.6 4.3E-08 1.5E-12 92.4 5.6 79 27-112 214-297 (300)
84 1vec_A ATP-dependent RNA helic 98.6 1.1E-07 3.7E-12 83.9 7.7 80 18-110 123-205 (206)
85 2oxc_A Probable ATP-dependent 98.6 7.6E-08 2.6E-12 86.8 6.6 78 28-111 147-227 (230)
86 1qde_A EIF4A, translation init 98.6 9.3E-08 3.2E-12 85.6 7.1 78 28-112 136-216 (224)
87 1t6n_A Probable ATP-dependent 98.5 1.2E-07 4.1E-12 84.7 7.2 80 19-110 136-218 (220)
88 4a15_A XPD helicase, ATP-depen 98.4 2.1E-06 7.2E-11 88.8 14.4 164 80-251 375-583 (620)
89 3crv_A XPD/RAD3 related DNA he 98.2 6.4E-05 2.2E-09 76.7 17.9 160 81-250 316-529 (551)
90 3llm_A ATP-dependent RNA helic 98.1 8E-06 2.7E-10 73.8 8.3 69 27-103 159-228 (235)
91 3b6e_A Interferon-induced heli 97.6 5.3E-05 1.8E-09 66.7 4.6 47 42-89 159-216 (216)
92 1rif_A DAR protein, DNA helica 97.4 9.6E-05 3.3E-09 68.4 3.7 61 18-94 205-266 (282)
93 2fz4_A DNA repair protein RAD2 97.3 0.00034 1.2E-08 63.2 6.1 42 44-94 191-232 (237)
94 3hgt_A HDA1 complex subunit 3; 97.1 0.009 3.1E-07 56.1 13.9 126 131-261 109-246 (328)
95 1gm5_A RECG; helicase, replica 95.5 0.038 1.3E-06 58.4 9.2 75 145-219 417-496 (780)
96 3oiy_A Reverse gyrase helicase 94.8 0.076 2.6E-06 51.3 8.4 77 143-219 62-145 (414)
97 4ddu_A Reverse gyrase; topoiso 93.6 0.13 4.5E-06 56.4 8.1 76 143-219 119-202 (1104)
98 2eyq_A TRCF, transcription-rep 93.0 0.57 2E-05 51.6 12.1 76 144-219 651-731 (1151)
99 3ber_A Probable ATP-dependent 91.7 1 3.5E-05 40.1 10.2 74 141-218 107-191 (249)
100 1oyw_A RECQ helicase, ATP-depe 91.4 0.48 1.7E-05 47.5 8.3 74 145-218 65-144 (523)
101 1t6n_A Probable ATP-dependent 91.0 2.6 8.8E-05 36.3 11.8 71 145-218 82-163 (220)
102 2v1x_A ATP-dependent DNA helic 90.8 0.47 1.6E-05 48.4 7.6 59 145-203 84-144 (591)
103 3fe2_A Probable ATP-dependent 90.3 3.2 0.00011 36.5 11.9 71 144-218 101-181 (242)
104 2oxc_A Probable ATP-dependent 89.5 0.8 2.7E-05 40.1 7.2 55 144-203 91-150 (230)
105 2pl3_A Probable ATP-dependent 87.8 2.8 9.5E-05 36.6 9.6 55 144-203 96-154 (236)
106 3bor_A Human initiation factor 87.8 0.97 3.3E-05 39.8 6.6 57 144-203 97-157 (237)
107 1vec_A ATP-dependent RNA helic 87.7 1.7 5.8E-05 37.0 7.9 56 144-203 70-130 (206)
108 2gxq_A Heat resistant RNA depe 87.5 4.9 0.00017 33.9 10.8 56 144-203 71-128 (207)
109 1xti_A Probable ATP-dependent 86.7 5.9 0.0002 37.1 11.9 72 145-219 76-158 (391)
110 3iuy_A Probable ATP-dependent 86.6 1.7 5.8E-05 37.8 7.4 71 144-218 93-172 (228)
111 3ly5_A ATP-dependent RNA helic 84.8 4.3 0.00015 36.3 9.3 71 144-218 125-206 (262)
112 1qde_A EIF4A, translation init 84.2 1.2 4E-05 38.6 5.1 55 144-203 81-139 (224)
113 1wrb_A DJVLGB; RNA helicase, D 82.6 3.5 0.00012 36.4 7.7 55 145-203 100-158 (253)
114 1wp9_A ATP-dependent RNA helic 79.9 5.4 0.00018 38.2 8.6 71 144-219 51-131 (494)
115 2i4i_A ATP-dependent RNA helic 78.6 14 0.00048 34.8 11.0 70 146-219 102-181 (417)
116 3gk5_A Uncharacterized rhodane 78.2 1.7 5.9E-05 33.3 3.5 37 144-180 54-90 (108)
117 3foj_A Uncharacterized protein 77.7 1.7 5.9E-05 32.6 3.3 37 144-180 55-91 (100)
118 1fuu_A Yeast initiation factor 77.4 5.8 0.0002 37.1 7.8 71 144-219 88-168 (394)
119 2db3_A ATP-dependent RNA helic 77.4 7.4 0.00025 37.5 8.7 71 145-219 129-209 (434)
120 1hv8_A Putative ATP-dependent 77.1 11 0.00038 34.6 9.6 72 143-219 72-153 (367)
121 3tbk_A RIG-I helicase domain; 77.0 3.3 0.00011 40.8 6.2 71 145-219 52-133 (555)
122 4a2p_A RIG-I, retinoic acid in 76.7 4.5 0.00016 39.9 7.1 71 145-219 55-136 (556)
123 3eme_A Rhodanese-like domain p 76.2 1.7 5.9E-05 32.8 3.0 36 144-179 55-90 (103)
124 4a2q_A RIG-I, retinoic acid in 76.1 5.8 0.0002 41.7 8.0 70 145-218 296-376 (797)
125 1s2m_A Putative ATP-dependent 75.0 7.7 0.00026 36.5 7.9 72 144-219 88-169 (400)
126 3iwh_A Rhodanese-like domain p 74.7 2 6.8E-05 32.7 3.0 36 144-179 55-90 (103)
127 1gku_B Reverse gyrase, TOP-RG; 74.1 3.7 0.00013 44.8 5.9 74 144-219 98-181 (1054)
128 1wv9_A Rhodanese homolog TT165 73.8 2.4 8.3E-05 31.3 3.2 35 146-180 54-88 (94)
129 3fmo_B ATP-dependent RNA helic 73.8 2.6 8.8E-05 38.7 4.0 68 145-219 162-241 (300)
130 3dkp_A Probable ATP-dependent 72.9 1.4 4.7E-05 38.9 1.9 72 144-218 97-180 (245)
131 3hix_A ALR3790 protein; rhodan 72.2 3.4 0.00012 31.3 3.8 37 144-180 51-88 (106)
132 2j0s_A ATP-dependent RNA helic 72.2 12 0.00042 35.2 8.6 71 144-218 104-184 (410)
133 3eiq_A Eukaryotic initiation f 71.9 10 0.00035 35.7 8.0 72 144-218 107-188 (414)
134 1q0u_A Bstdead; DEAD protein, 71.7 2.7 9.1E-05 36.3 3.4 56 144-203 71-134 (219)
135 2vl7_A XPD; helicase, unknown 71.2 1.3 4.4E-05 44.5 1.4 43 17-59 144-189 (540)
136 2l82_A Designed protein OR32; 71.0 21 0.00071 27.3 7.7 51 148-198 5-55 (162)
137 1tf5_A Preprotein translocase 70.9 12 0.0004 39.5 8.6 72 141-218 120-208 (844)
138 3g5j_A Putative ATP/GTP bindin 70.2 5.6 0.00019 31.1 4.8 36 146-181 90-126 (134)
139 2fsf_A Preprotein translocase 69.8 11 0.00038 39.7 8.0 56 143-204 113-172 (853)
140 2jtq_A Phage shock protein E; 68.7 9 0.00031 27.4 5.3 37 143-180 39-76 (85)
141 3crv_A XPD/RAD3 related DNA he 68.4 1.4 4.9E-05 44.3 1.0 42 17-62 148-189 (551)
142 1nkt_A Preprotein translocase 66.6 17 0.00058 38.6 8.6 73 140-218 147-236 (922)
143 2k0z_A Uncharacterized protein 66.5 6.4 0.00022 30.0 4.3 38 143-180 54-91 (110)
144 2fsx_A RV0390, COG0607: rhodan 66.0 5.5 0.00019 32.2 4.0 37 144-180 79-116 (148)
145 3nhv_A BH2092 protein; alpha-b 65.4 4.1 0.00014 32.9 3.1 37 144-180 71-109 (144)
146 3flh_A Uncharacterized protein 64.1 2.8 9.7E-05 32.8 1.8 37 144-180 70-108 (124)
147 2z0m_A 337AA long hypothetical 63.6 32 0.0011 31.0 9.3 70 145-219 56-135 (337)
148 1gmx_A GLPE protein; transfera 63.5 3.9 0.00013 31.0 2.5 38 144-181 57-95 (108)
149 2ipc_A Preprotein translocase 62.7 16 0.00055 38.9 7.6 59 140-204 115-177 (997)
150 3ipz_A Monothiol glutaredoxin- 62.5 40 0.0014 25.4 8.3 66 132-200 7-78 (109)
151 1qxn_A SUD, sulfide dehydrogen 62.4 4.4 0.00015 32.4 2.7 37 144-180 81-118 (137)
152 3d1p_A Putative thiosulfate su 62.1 5.5 0.00019 31.7 3.3 37 144-180 90-127 (139)
153 2ykg_A Probable ATP-dependent 62.0 9.6 0.00033 39.0 5.9 70 146-219 62-142 (696)
154 1tq1_A AT5G66040, senescence-a 62.0 4.3 0.00015 32.0 2.5 37 144-180 81-118 (129)
155 3b6e_A Interferon-induced heli 62.0 10 0.00034 32.0 5.2 56 144-203 81-140 (216)
156 2hhg_A Hypothetical protein RP 61.4 4.8 0.00017 32.0 2.8 37 144-180 85-122 (139)
157 3ilm_A ALR3790 protein; rhodan 60.8 7.3 0.00025 31.3 3.8 36 144-179 55-91 (141)
158 4gl2_A Interferon-induced heli 58.0 2.1 7.2E-05 44.1 -0.0 69 146-218 57-141 (699)
159 4a2w_A RIG-I, retinoic acid in 56.6 9 0.00031 41.1 4.6 71 145-219 296-377 (936)
160 3l9o_A ATP-dependent RNA helic 55.5 10 0.00036 41.5 5.0 64 144-218 226-295 (1108)
161 2fz4_A DNA repair protein RAD2 55.5 37 0.0013 29.5 7.9 46 145-203 133-179 (237)
162 1vee_A Proline-rich protein fa 55.4 7.3 0.00025 30.8 2.9 37 144-180 73-110 (134)
163 1a5t_A Delta prime, HOLB; zinc 55.3 34 0.0012 31.5 8.0 47 44-96 107-153 (334)
164 3zyw_A Glutaredoxin-3; metal b 54.4 56 0.0019 24.7 7.8 65 133-200 6-76 (111)
165 2gno_A DNA polymerase III, gam 54.1 13 0.00044 34.1 4.7 46 43-94 80-125 (305)
166 3dmn_A Putative DNA helicase; 53.6 91 0.0031 25.5 9.8 63 145-222 61-123 (174)
167 2fwr_A DNA repair protein RAD2 53.4 12 0.0004 36.3 4.5 46 145-203 133-179 (472)
168 4f67_A UPF0176 protein LPG2838 52.9 14 0.00048 33.3 4.6 48 134-181 170-218 (265)
169 1uar_A Rhodanese; sulfurtransf 51.6 19 0.00066 32.2 5.4 46 134-179 219-269 (285)
170 3tb6_A Arabinose metabolism tr 49.7 87 0.003 27.3 9.6 39 133-171 187-226 (298)
171 1urh_A 3-mercaptopyruvate sulf 48.9 18 0.0006 32.4 4.7 47 135-181 217-267 (280)
172 2yan_A Glutaredoxin-3; oxidore 48.9 67 0.0023 23.6 7.4 66 132-200 6-77 (105)
173 2wci_A Glutaredoxin-4; redox-a 48.8 87 0.003 24.7 8.3 67 131-200 23-95 (135)
174 3i5x_A ATP-dependent RNA helic 47.9 35 0.0012 33.7 7.2 70 146-218 147-231 (563)
175 3gx8_A Monothiol glutaredoxin- 47.3 94 0.0032 23.8 8.6 65 132-199 5-78 (121)
176 1g5t_A COB(I)alamin adenosyltr 47.2 27 0.00092 29.9 5.3 53 38-93 113-165 (196)
177 2wem_A Glutaredoxin-related pr 46.1 98 0.0034 23.7 8.9 64 134-200 11-81 (118)
178 2r2a_A Uncharacterized protein 46.0 7.7 0.00026 33.3 1.6 15 44-58 86-100 (199)
179 2chg_A Replication factor C sm 45.8 68 0.0023 26.4 7.8 43 44-92 101-143 (226)
180 4fn4_A Short chain dehydrogena 45.7 72 0.0025 28.2 8.2 59 145-203 31-92 (254)
181 3tg1_B Dual specificity protei 45.5 14 0.00046 30.2 3.1 35 145-179 93-136 (158)
182 3sqw_A ATP-dependent RNA helic 45.1 8.3 0.00028 38.7 2.0 71 146-219 96-181 (579)
183 3pey_A ATP-dependent RNA helic 44.8 29 0.00098 32.1 5.7 68 144-219 74-151 (395)
184 2cjg_A L-lysine-epsilon aminot 44.6 26 0.0009 33.6 5.5 49 7-56 221-275 (449)
185 3l44_A Glutamate-1-semialdehyd 44.3 19 0.00065 34.2 4.4 49 7-56 192-246 (434)
186 3fq8_A Glutamate-1-semialdehyd 44.0 25 0.00084 33.3 5.1 50 6-56 188-243 (427)
187 3eod_A Protein HNR; response r 42.7 1E+02 0.0034 22.9 7.8 48 43-97 49-96 (130)
188 3fht_A ATP-dependent RNA helic 42.4 24 0.00082 32.9 4.7 69 144-219 94-174 (412)
189 2cy8_A D-phgat, D-phenylglycin 41.9 20 0.0007 34.3 4.2 39 17-56 201-245 (453)
190 2oca_A DAR protein, ATP-depend 41.7 59 0.002 31.5 7.6 69 144-219 156-231 (510)
191 2b8t_A Thymidine kinase; deoxy 41.7 40 0.0014 29.3 5.7 44 36-87 80-123 (223)
192 2eg4_A Probable thiosulfate su 41.3 17 0.00059 31.5 3.2 38 143-180 182-219 (230)
193 2e7u_A Glutamate-1-semialdehyd 41.2 24 0.00082 33.4 4.6 38 17-56 199-242 (424)
194 2wlr_A Putative thiosulfate su 41.0 29 0.001 33.2 5.1 48 134-181 189-240 (423)
195 1e0c_A Rhodanese, sulfurtransf 39.5 22 0.00075 31.6 3.7 36 144-179 222-258 (271)
196 1urh_A 3-mercaptopyruvate sulf 39.5 22 0.00076 31.7 3.8 37 144-180 85-123 (280)
197 1sxj_B Activator 1 37 kDa subu 39.4 43 0.0015 30.0 5.8 42 45-92 107-148 (323)
198 3e4c_A Caspase-1; zymogen, inf 39.3 76 0.0026 29.0 7.4 47 146-193 61-118 (302)
199 3aay_A Putative thiosulfate su 39.0 42 0.0014 29.7 5.6 37 143-179 224-262 (277)
200 1rhs_A Sulfur-substituted rhod 39.0 26 0.00088 31.7 4.2 46 135-180 227-276 (296)
201 3aay_A Putative thiosulfate su 38.5 41 0.0014 29.8 5.4 38 143-180 75-114 (277)
202 3i2v_A Adenylyltransferase and 38.1 16 0.00054 28.1 2.2 36 146-181 73-115 (127)
203 3dxv_A Alpha-amino-epsilon-cap 38.0 38 0.0013 32.1 5.4 40 16-56 200-245 (439)
204 3n5m_A Adenosylmethionine-8-am 37.9 23 0.00078 33.9 3.8 50 6-56 203-259 (452)
205 1wik_A Thioredoxin-like protei 37.7 1.1E+02 0.0036 22.7 7.0 54 146-199 15-74 (109)
206 2qxy_A Response regulator; reg 36.9 80 0.0027 23.9 6.4 46 44-97 47-92 (142)
207 2p6r_A Afuhel308 helicase; pro 36.2 25 0.00087 36.1 4.0 67 145-218 68-143 (702)
208 3dod_A Adenosylmethionine-8-am 35.9 23 0.00079 33.9 3.5 39 17-56 210-255 (448)
209 2orw_A Thymidine kinase; TMTK, 35.9 25 0.00085 29.4 3.3 14 45-58 76-89 (184)
210 1e0c_A Rhodanese, sulfurtransf 35.7 39 0.0013 29.9 4.8 37 143-179 79-117 (271)
211 1njg_A DNA polymerase III subu 35.3 45 0.0015 28.0 5.0 41 46-92 127-167 (250)
212 4e77_A Glutamate-1-semialdehyd 35.2 31 0.0011 32.6 4.3 49 7-56 190-244 (429)
213 2lci_A Protein OR36; structura 35.2 1.3E+02 0.0046 22.1 13.6 106 83-202 3-108 (134)
214 1u6t_A SH3 domain-binding glut 35.1 46 0.0016 26.0 4.5 40 152-191 13-52 (121)
215 2xgj_A ATP-dependent RNA helic 34.6 33 0.0011 37.1 4.7 64 144-218 128-197 (1010)
216 1jr3_A DNA polymerase III subu 34.3 51 0.0017 30.3 5.6 43 44-92 118-160 (373)
217 3rqi_A Response regulator prot 34.3 1E+02 0.0035 24.9 7.0 47 43-97 49-96 (184)
218 3k28_A Glutamate-1-semialdehyd 34.2 23 0.00078 33.7 3.1 39 17-56 200-244 (429)
219 4ao9_A Beta-phenylalanine amin 34.2 32 0.0011 33.5 4.2 57 7-65 210-272 (454)
220 3egc_A Putative ribose operon 34.0 1.4E+02 0.0047 26.0 8.3 38 133-171 174-211 (291)
221 2j6p_A SB(V)-AS(V) reductase; 33.9 39 0.0013 27.2 4.1 48 134-181 57-112 (152)
222 3u61_B DNA polymerase accessor 33.9 42 0.0014 30.4 4.8 43 45-92 105-147 (324)
223 3kto_A Response regulator rece 33.7 97 0.0033 23.3 6.4 49 43-96 48-96 (136)
224 2h54_A Caspase-1; allosteric s 33.6 1E+02 0.0035 25.7 6.7 48 145-193 43-101 (178)
225 1dbw_A Transcriptional regulat 33.6 1.4E+02 0.0048 21.9 7.3 46 44-96 46-91 (126)
226 2kjq_A DNAA-related protein; s 33.5 55 0.0019 26.1 4.9 53 45-102 83-139 (149)
227 2pjx_C Syntaxin-4; membrane tr 33.2 24 0.00082 19.3 1.7 19 373-391 8-26 (29)
228 1zod_A DGD, 2,2-dialkylglycine 33.0 37 0.0013 32.1 4.4 39 17-56 203-247 (433)
229 3o8b_A HCV NS3 protease/helica 33.0 70 0.0024 32.8 6.6 66 145-221 257-326 (666)
230 1uar_A Rhodanese; sulfurtransf 32.6 38 0.0013 30.2 4.2 38 143-180 77-116 (285)
231 1c4o_A DNA nucleotide excision 32.5 2E+02 0.0068 29.2 10.0 77 132-209 41-144 (664)
232 2zj8_A DNA helicase, putative 32.4 20 0.0007 36.9 2.6 67 145-218 68-143 (720)
233 1iqp_A RFCS; clamp loader, ext 31.9 61 0.0021 29.0 5.6 45 44-94 109-153 (327)
234 3hzu_A Thiosulfate sulfurtrans 31.7 49 0.0017 30.3 4.9 36 144-179 110-147 (318)
235 3h11_B Caspase-8; cell death, 31.4 67 0.0023 28.8 5.5 39 154-193 47-85 (271)
236 3o74_A Fructose transport syst 31.0 2.4E+02 0.0084 23.9 13.5 42 129-170 163-204 (272)
237 3do8_A Phosphopantetheine aden 30.7 34 0.0012 27.7 3.1 40 15-54 84-123 (148)
238 3qk7_A Transcriptional regulat 30.7 2.7E+02 0.0091 24.2 13.1 41 130-171 172-212 (294)
239 4a4z_A Antiviral helicase SKI2 30.6 54 0.0019 35.3 5.6 49 144-203 81-131 (997)
240 1sff_A 4-aminobutyrate aminotr 30.4 36 0.0012 31.9 3.8 39 17-56 199-243 (426)
241 3fmp_B ATP-dependent RNA helic 30.3 34 0.0012 33.0 3.7 67 146-219 163-241 (479)
242 1s0a_A Adenosylmethionine-8-am 29.9 41 0.0014 31.7 4.2 39 17-56 204-249 (429)
243 3hjh_A Transcription-repair-co 29.5 36 0.0012 33.5 3.6 76 133-221 371-446 (483)
244 2r6a_A DNAB helicase, replicat 29.4 1.2E+02 0.0043 29.0 7.6 27 33-59 301-327 (454)
245 4a6r_A Omega transaminase; tra 29.4 45 0.0015 32.0 4.3 39 17-56 219-263 (459)
246 3hv2_A Response regulator/HD d 29.0 1.1E+02 0.0039 23.5 6.2 45 45-96 58-102 (153)
247 1w4r_A Thymidine kinase; type 28.9 58 0.002 27.7 4.4 13 45-57 91-103 (195)
248 1vp8_A Hypothetical protein AF 28.9 61 0.0021 27.6 4.4 76 131-206 30-109 (201)
249 3olh_A MST, 3-mercaptopyruvate 28.8 26 0.00088 31.9 2.3 48 134-181 240-291 (302)
250 3hjh_A Transcription-repair-co 28.4 3E+02 0.01 26.8 10.1 106 131-237 26-149 (483)
251 2eg4_A Probable thiosulfate su 28.4 73 0.0025 27.3 5.2 42 136-178 51-95 (230)
252 2ouc_A Dual specificity protei 28.4 26 0.0009 27.2 2.1 34 146-179 84-126 (142)
253 1rif_A DAR protein, DNA helica 28.3 67 0.0023 28.4 5.1 52 145-203 157-212 (282)
254 1qkk_A DCTD, C4-dicarboxylate 28.3 1.7E+02 0.0058 22.4 7.1 47 43-96 45-91 (155)
255 3lua_A Response regulator rece 28.2 1.9E+02 0.0064 21.6 7.7 47 44-96 49-97 (140)
256 4a15_A XPD helicase, ATP-depen 28.2 16 0.00053 37.3 0.8 43 17-59 175-218 (620)
257 2epj_A Glutamate-1-semialdehyd 28.1 34 0.0012 32.4 3.2 39 17-56 203-247 (434)
258 3hzh_A Chemotaxis response reg 28.0 1.3E+02 0.0043 23.4 6.3 45 46-97 84-128 (157)
259 3cz5_A Two-component response 27.8 1.7E+02 0.0059 22.3 7.1 46 44-96 50-95 (153)
260 3jte_A Response regulator rece 27.8 1.4E+02 0.0046 22.5 6.3 46 44-96 48-93 (143)
261 3i5t_A Aminotransferase; pyrid 27.7 46 0.0016 32.2 4.1 39 17-56 221-265 (476)
262 3dbi_A Sugar-binding transcrip 27.7 3.2E+02 0.011 24.2 12.1 41 130-171 227-267 (338)
263 2va8_A SSO2462, SKI2-type heli 27.5 34 0.0011 35.2 3.2 67 145-218 75-150 (715)
264 3hmu_A Aminotransferase, class 27.5 51 0.0018 31.9 4.4 39 17-56 223-267 (472)
265 1z7d_A Ornithine aminotransfer 27.4 67 0.0023 30.5 5.2 39 17-56 212-256 (433)
266 3nra_A Aspartate aminotransfer 26.9 71 0.0024 29.5 5.2 51 7-60 172-226 (407)
267 3vfd_A Spastin; ATPase, microt 26.9 90 0.0031 29.2 5.9 14 45-58 207-220 (389)
268 2r2n_A Kynurenine/alpha-aminoa 26.8 92 0.0031 29.2 6.0 43 17-60 190-238 (425)
269 3oks_A 4-aminobutyrate transam 26.8 57 0.0019 31.2 4.5 39 17-56 227-271 (451)
270 1t1v_A SH3BGRL3, SH3 domain-bi 26.7 84 0.0029 22.5 4.5 45 147-191 3-54 (93)
271 3ntd_A FAD-dependent pyridine 26.6 41 0.0014 33.3 3.5 37 144-180 523-559 (565)
272 3h11_A CAsp8 and FADD-like apo 26.5 26 0.00091 31.6 1.9 102 144-251 42-153 (272)
273 3gju_A Putative aminotransfera 26.5 54 0.0018 31.4 4.3 39 17-56 221-265 (460)
274 2qr3_A Two-component system re 26.3 1.3E+02 0.0043 22.5 5.9 46 45-95 47-95 (140)
275 1w36_D RECD, exodeoxyribonucle 26.1 46 0.0016 33.6 3.9 36 45-89 262-298 (608)
276 3p45_A Caspase-6; protease, hu 26.0 1.3E+02 0.0043 25.2 5.9 49 145-194 44-106 (179)
277 1sxj_E Activator 1 40 kDa subu 26.0 66 0.0022 29.4 4.7 43 45-93 134-176 (354)
278 3hdv_A Response regulator; PSI 25.9 1.4E+02 0.0048 22.2 6.1 45 45-96 52-97 (136)
279 1vlj_A NADH-dependent butanol 25.7 2.3E+02 0.0078 26.7 8.6 70 133-202 31-108 (407)
280 3ez1_A Aminotransferase MOCR f 25.6 1.3E+02 0.0045 28.0 6.9 42 17-59 172-220 (423)
281 1jr3_D DNA polymerase III, del 25.6 80 0.0028 28.8 5.2 41 43-89 74-115 (343)
282 1qtn_A Caspase-8; apoptosis, d 25.4 1.1E+02 0.0038 25.0 5.5 40 154-194 53-92 (164)
283 2oat_A Ornithine aminotransfer 25.3 68 0.0023 30.5 4.8 39 17-56 223-267 (439)
284 3d6k_A Putative aminotransfera 25.2 1.3E+02 0.0044 28.1 6.7 39 18-57 179-224 (422)
285 3tfu_A Adenosylmethionine-8-am 25.1 46 0.0016 32.1 3.5 39 17-56 233-278 (457)
286 4ag6_A VIRB4 ATPase, type IV s 24.9 55 0.0019 30.7 4.0 16 44-59 261-276 (392)
287 3fdb_A Beta C-S lyase, putativ 24.8 1.1E+02 0.0036 27.9 6.0 52 6-60 142-197 (377)
288 1pyo_A Caspase-2; apoptosis, c 24.8 1.6E+02 0.0054 24.2 6.3 49 144-193 32-94 (167)
289 3ppl_A Aspartate aminotransfer 24.7 1.2E+02 0.0041 28.3 6.4 43 17-60 180-229 (427)
290 3f6c_A Positive transcription 24.7 1.1E+02 0.0038 22.7 5.2 45 45-96 46-90 (134)
291 1srr_A SPO0F, sporulation resp 24.6 1.8E+02 0.0061 21.1 6.3 46 45-97 47-92 (124)
292 3a8u_X Omega-amino acid--pyruv 24.5 47 0.0016 31.6 3.4 39 17-56 219-263 (449)
293 2qen_A Walker-type ATPase; unk 24.5 80 0.0028 28.4 5.0 43 46-89 129-172 (350)
294 3g0t_A Putative aminotransfera 24.4 1E+02 0.0034 28.8 5.8 42 18-60 183-229 (437)
295 3hdg_A Uncharacterized protein 24.3 1E+02 0.0034 23.1 4.9 46 45-97 51-96 (137)
296 3h75_A Periplasmic sugar-bindi 24.3 3.8E+02 0.013 23.9 13.8 42 129-171 189-230 (350)
297 3kcn_A Adenylate cyclase homol 24.1 1.8E+02 0.0062 22.2 6.5 45 45-96 48-92 (151)
298 2wlr_A Putative thiosulfate su 24.0 83 0.0028 29.9 5.1 45 135-179 345-393 (423)
299 1sxj_C Activator 1 40 kDa subu 23.9 72 0.0025 29.1 4.5 43 45-93 110-152 (340)
300 1okg_A Possible 3-mercaptopyru 23.7 38 0.0013 31.9 2.6 38 145-182 246-284 (373)
301 2q6t_A DNAB replication FORK h 23.2 78 0.0027 30.4 4.7 27 33-59 298-324 (444)
302 3qmx_A Glutaredoxin A, glutare 23.1 2.2E+02 0.0075 20.6 6.7 56 145-200 15-72 (99)
303 1rhs_A Sulfur-substituted rhod 23.1 60 0.0021 29.1 3.7 38 143-180 90-131 (296)
304 1xx6_A Thymidine kinase; NESG, 23.0 78 0.0027 26.6 4.2 34 45-86 81-114 (191)
305 4ffc_A 4-aminobutyrate aminotr 22.9 51 0.0017 31.6 3.4 39 17-56 225-269 (453)
306 4eu1_A Mitochondrial aspartate 22.9 94 0.0032 28.9 5.2 55 6-61 172-231 (409)
307 1sxj_D Activator 1 41 kDa subu 22.6 1E+02 0.0035 27.9 5.3 44 45-94 133-176 (353)
308 2xw6_A MGS, methylglyoxal synt 22.6 70 0.0024 25.5 3.5 43 161-204 40-83 (134)
309 3ics_A Coenzyme A-disulfide re 22.5 53 0.0018 32.7 3.5 38 144-181 540-577 (588)
310 1yt8_A Thiosulfate sulfurtrans 22.5 62 0.0021 32.0 3.9 37 144-180 321-358 (539)
311 3fsl_A Aromatic-amino-acid ami 22.4 1.2E+02 0.004 27.9 5.7 55 6-61 162-221 (397)
312 1b93_A Protein (methylglyoxal 22.3 83 0.0028 25.6 4.0 43 161-204 48-91 (152)
313 3syl_A Protein CBBX; photosynt 22.1 1.3E+02 0.0046 26.5 5.9 13 46-58 131-143 (309)
314 4adb_A Succinylornithine trans 22.0 61 0.0021 30.0 3.6 39 17-56 183-227 (406)
315 2nn3_C Caspase-1; cysteine pro 21.7 1.7E+02 0.0057 26.8 6.4 100 145-250 60-178 (310)
316 1d2f_A MALY protein; aminotran 21.7 1.2E+02 0.0039 27.9 5.5 42 18-60 163-209 (390)
317 1t3k_A Arath CDC25, dual-speci 21.7 61 0.0021 26.0 3.1 38 144-181 84-131 (152)
318 3to5_A CHEY homolog; alpha(5)b 21.6 2E+02 0.0068 22.4 6.1 45 45-96 57-103 (134)
319 1j5p_A Aspartate dehydrogenase 21.5 1.4E+02 0.0049 26.4 5.7 63 147-210 62-126 (253)
320 1xwi_A SKD1 protein; VPS4B, AA 21.4 1.7E+02 0.0057 26.6 6.5 16 44-59 104-119 (322)
321 1okg_A Possible 3-mercaptopyru 21.4 84 0.0029 29.5 4.4 38 143-180 93-132 (373)
322 3hzu_A Thiosulfate sulfurtrans 21.3 46 0.0016 30.5 2.5 36 144-179 258-295 (318)
323 2j9r_A Thymidine kinase; TK1, 21.2 72 0.0025 27.6 3.6 14 45-58 101-114 (214)
324 1o69_A Aminotransferase; struc 21.1 63 0.0022 30.0 3.5 38 18-57 123-160 (394)
325 1sxj_A Activator 1 95 kDa subu 21.0 99 0.0034 30.3 5.1 43 45-91 148-190 (516)
326 2dko_A Caspase-3; low barrier 21.0 1.9E+02 0.0065 23.1 5.9 40 154-194 39-78 (146)
327 1d2n_A N-ethylmaleimide-sensit 20.9 1.3E+02 0.0046 26.1 5.6 52 44-95 123-180 (272)
328 3crn_A Response regulator rece 20.9 2E+02 0.0068 21.3 6.0 45 45-96 47-91 (132)
329 1c7n_A Cystalysin; transferase 20.9 1.4E+02 0.0046 27.5 5.8 51 7-60 156-211 (399)
330 3eie_A Vacuolar protein sortin 20.9 1.6E+02 0.0054 26.6 6.2 50 45-94 110-166 (322)
331 4g81_D Putative hexonate dehyd 20.6 4E+02 0.014 23.3 8.6 58 146-203 34-94 (255)
332 3i4j_A Aminotransferase, class 20.3 60 0.0021 30.6 3.2 39 17-56 190-235 (430)
333 3h1t_A Type I site-specific re 20.2 1.3E+02 0.0044 29.8 5.8 49 144-204 234-283 (590)
334 2zay_A Response regulator rece 20.2 2.3E+02 0.0079 21.2 6.3 45 45-96 52-98 (147)
335 1l8q_A Chromosomal replication 20.1 68 0.0023 29.0 3.5 14 46-59 99-112 (324)
336 2lqo_A Putative glutaredoxin R 20.1 2.4E+02 0.0083 20.3 5.9 43 147-189 5-48 (92)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.9e-56 Score=459.86 Aligned_cols=310 Identities=38% Similarity=0.708 Sum_probs=272.7
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecCh-HHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 81 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp-~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~ 81 (394)
++..++..+.......+|+|+|||.+.++ .++..+.+......+++|||||||++++|||+||+.|..|..++..+|+.
T Consensus 122 ~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~ 201 (591)
T 2v1x_A 122 HVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNA 201 (591)
T ss_dssp HHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTS
T ss_pred HHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCC
Confidence 34556677754444589999999988764 56666777667788999999999999999999999999988899999999
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCc-hhhHHHHHHHHHHh-CCCccEEEEeCcHHHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA-NGDTCAIVYCLERTTCD 159 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~-~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~ 159 (394)
|+++||||+++.+..++...+++..+..+..++.++|++|.+..... ...++..|..++.. ..++++||||+|++.++
T Consensus 202 ~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e 281 (591)
T 2v1x_A 202 SLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSE 281 (591)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHH
T ss_pred cEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHH
Confidence 99999999999999999999999999999999999999999887653 34566777787764 36779999999999999
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccC
Q 016133 160 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 239 (394)
Q Consensus 160 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 239 (394)
.+++.|.+.|+.+..|||+|++.+|..++++|++|+++|||||++++||||+|+|++||||++|.|+++|+||+|||||+
T Consensus 282 ~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~ 361 (591)
T 2v1x_A 282 QVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD 361 (591)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred HHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhh-cccchHHHHHhhhCCCCCCCCcCC
Q 016133 240 QLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQIPVSLCKN 318 (394)
Q Consensus 240 g~~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Crr~~l~~~f~~~~~~~~c~~ 318 (394)
|++|.|+++|++.|...++.++... ......+..|+.||+ ...|||+.|++|||+...+..|++
T Consensus 362 G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~ 426 (591)
T 2v1x_A 362 DMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNK 426 (591)
T ss_dssp SSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---CCCS
T ss_pred CCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccccCC
Confidence 9999999999999999888876431 123456788999999 589999999999999876668988
Q ss_pred CCCCCCCch
Q 016133 319 SCDACKHPN 327 (394)
Q Consensus 319 ~Cd~C~~~~ 327 (394)
.||+|..+.
T Consensus 427 ~Cd~C~~~~ 435 (591)
T 2v1x_A 427 MCDNCCKDS 435 (591)
T ss_dssp CBHHHHCCC
T ss_pred CCCCCCCCC
Confidence 899998763
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-55 Score=449.46 Aligned_cols=304 Identities=39% Similarity=0.714 Sum_probs=271.5
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
++..++..+..+. .+++|+|||.+.++.+...+. ...+++|||||||++++||++||+.|..|..++..+|+.|
T Consensus 103 ~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l~----~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~ 176 (523)
T 1oyw_A 103 QQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLA----HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP 176 (523)
T ss_dssp HHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHHT----TSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSC
T ss_pred HHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHHh----hCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCC
Confidence 3456677888886 899999999988776655543 3569999999999999999999999999999999999999
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~ 162 (394)
+++||||+++.+..++.+.+++.++.++..++.++|+.|.+.... .+...+..++....++++||||+|++.++.++
T Consensus 177 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~ 253 (523)
T 1oyw_A 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (523)
T ss_dssp EEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999999999888763 46677888888777789999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCC
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 242 (394)
+.|.+.|+.+..|||+|++++|..+++.|++|+.+|||||++++||||+|+|++||||++|.|+++|+||+|||||+|++
T Consensus 254 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 254 ARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred HHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecccHHHHHHHHHhcccCCCCccchhHhhhhhhhhhHHHHHHHhhcccchHHHHHhhhCCCCCCCCcCCCCCC
Q 016133 243 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDA 322 (394)
Q Consensus 243 g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~c~~~Cd~ 322 (394)
|.|+++|++.|...+++++..... ++........+++|.+||++..|||+.|++|||+..+ .+|+ .||+
T Consensus 334 ~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~~l~~~f~e~~~-~~c~-~cd~ 402 (523)
T 1oyw_A 334 AEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQ-EPCG-NCDI 402 (523)
T ss_dssp EEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTCCCC-SCCS-CBHH
T ss_pred ceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhhhhHhhcCCCCC-CCCC-CCCC
Confidence 999999999999999988875211 1222344567899999999999999999999999864 4687 5999
Q ss_pred CCCc
Q 016133 323 CKHP 326 (394)
Q Consensus 323 C~~~ 326 (394)
|..+
T Consensus 403 c~~~ 406 (523)
T 1oyw_A 403 CLDP 406 (523)
T ss_dssp HHSC
T ss_pred CCCC
Confidence 9874
No 3
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-36 Score=314.34 Aligned_cols=240 Identities=18% Similarity=0.246 Sum_probs=186.0
Q ss_pred ccEEEeCCceecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-----CCCEEEEeecC
Q 016133 18 LRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATA 90 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-----~~~~l~lSAT~ 90 (394)
.+|+++||+.+. ..+.+ ......+++|||||||++++|| |++.+..+........ +.|+++||||+
T Consensus 151 ~~IlV~Tp~~l~-----~~l~~~~~~~~~~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 223 (579)
T 3sqw_A 151 PNIVIATPGRLI-----DVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATL 223 (579)
T ss_dssp CSEEEECHHHHH-----HHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred CCEEEECHHHHH-----HHHHhccccccccCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccC
Confidence 467777776442 12221 2345679999999999999999 9999988866654432 78999999999
Q ss_pred ChhHHHHHHHHhCCCCCEEEec-C----CCCCCeEEEEEEcCchh----hHHHHHHHHHHh-CCCccEEEEeCcHHHHHH
Q 016133 91 APKVQKDVMESLCLQNPLVLKS-S----FNRPNLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~-~----~~~~nl~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~ 160 (394)
++.+...+...+.......+.. . .....+...+....... ..+..+...+.. ..+.++||||+|++.++.
T Consensus 224 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~ 303 (579)
T 3sqw_A 224 DDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF 303 (579)
T ss_dssp CTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHH
T ss_pred ChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHH
Confidence 9988764444333222222221 1 12233444333333222 223334444443 556799999999999999
Q ss_pred HHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcc
Q 016133 161 LSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 161 l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.+++.|+||+||||
T Consensus 304 l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 304 LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccc
Confidence 99999886 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 238 RDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 238 R~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
|+|+.|.|++|+.+.|...++.+.+..
T Consensus 384 R~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 384 RSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp CTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.8e-36 Score=312.12 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=184.9
Q ss_pred ccEEEeCCceecChHHHHHHHh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-----CCCCEEEEeecC
Q 016133 18 LRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATA 90 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-----~~~~~l~lSAT~ 90 (394)
.+|+++||+.+. ..+.+ ......+++|||||||++++|| |++.+..+....... ++.|+++||||+
T Consensus 202 ~~Iiv~Tp~~l~-----~~l~~~~~~~~~~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 274 (563)
T 3i5x_A 202 PNIVIATPGRLI-----DVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATL 274 (563)
T ss_dssp CSEEEECHHHHH-----HHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred CCEEEECcHHHH-----HHHHhccccccccceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccC
Confidence 467777776442 12221 2245679999999999999999 999998876655432 378999999999
Q ss_pred ChhHHHHHHHHhCCCCCEEEecC-----CCCCCeEEEEEEcCchhh----HHHHHHHHHHh-CCCccEEEEeCcHHHHHH
Q 016133 91 APKVQKDVMESLCLQNPLVLKSS-----FNRPNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDE 160 (394)
Q Consensus 91 ~~~~~~~i~~~l~~~~~~~~~~~-----~~~~nl~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~ 160 (394)
++.+...+...+.......+... .....+...+........ ....+...+.. ..+.++||||+|++.++.
T Consensus 275 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~ 354 (563)
T 3i5x_A 275 DDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSF 354 (563)
T ss_dssp CTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHH
T ss_pred CHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHH
Confidence 99887644433332222222211 122334433333332222 23333343433 566799999999999999
Q ss_pred HHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcc
Q 016133 161 LSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 161 l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+|++|.++.+|+||+||||
T Consensus 355 l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 355 LCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 434 (563)
T ss_dssp HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccc
Confidence 99999886 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 238 RDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 238 R~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
|.|+.|.+++++.+.|...++.+.+..
T Consensus 435 R~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 435 RSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999887653
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.2e-36 Score=298.06 Aligned_cols=227 Identities=20% Similarity=0.322 Sum_probs=182.8
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
++||+++..+. ......++++||+||||+++++| |++.+..+.......++.|+++||||+++.+...... .+.
T Consensus 184 v~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~--~l~ 259 (434)
T 2db3_A 184 IATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE--FLK 259 (434)
T ss_dssp EECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT--TCS
T ss_pred EEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH--hcc
Confidence 45555554442 23346789999999999999998 8988887744333356899999999999988764433 345
Q ss_pred CCEEEecCC---CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHH
Q 016133 106 NPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 182 (394)
Q Consensus 106 ~~~~~~~~~---~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~ 182 (394)
++..+.... ...++...+.... ...+...|..++..... ++||||+|++.++.+++.|.+.|+++..+||++++.
T Consensus 260 ~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~ 337 (434)
T 2db3_A 260 NYVFVAIGIVGGACSDVKQTIYEVN-KYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQS 337 (434)
T ss_dssp SCEEEEESSTTCCCTTEEEEEEECC-GGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHH
T ss_pred CCEEEEeccccccccccceEEEEeC-cHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHH
Confidence 666555432 2344544444433 34577788888887655 499999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc-cHHHHHHH
Q 016133 183 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFI 260 (394)
Q Consensus 183 ~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~-d~~~~~~i 260 (394)
+|..++++|++|+.+|||||+++++|+|+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+++. +....+.+
T Consensus 338 ~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 338 QREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp HHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999954 44444333
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=288.36 Aligned_cols=236 Identities=21% Similarity=0.333 Sum_probs=186.3
Q ss_pred ccEEEeCCceecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lSAT~~~~ 93 (394)
.+|+++||+ .+..+. .......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.
T Consensus 152 ~~I~v~Tp~------~l~~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~ 223 (417)
T 2i4i_A 152 CHLLVATPG------RLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE 223 (417)
T ss_dssp CSEEEECHH------HHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH
T ss_pred CCEEEEChH------HHHHHHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH
Confidence 356655555 433332 22346679999999999999988 8888777633222222 57899999999988
Q ss_pred HHHHHHHHhCCCCCEEEec---CCCCCCeEEEEEEcCchhhHHHHHHHHHHhC-CCccEEEEeCcHHHHHHHHHHHHhCC
Q 016133 94 VQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGG 169 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~---~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~l~~~L~~~g 169 (394)
+...+...+ .++..+.. ....+++...+.... ...+...+..+++.. .++++||||+|++.++.+++.|.+.|
T Consensus 224 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 224 IQMLARDFL--DEYIFLAVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp HHHHHHHHC--SSCEEEEEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCEEEEeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 776544444 35544433 234556665555443 356777788888775 56789999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 170 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 170 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
+.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHhc
Q 016133 250 GMDDRRRMEFILSKN 264 (394)
Q Consensus 250 ~~~d~~~~~~i~~~~ 264 (394)
++.|...++.+.+..
T Consensus 381 ~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 381 NERNINITKDLLDLL 395 (417)
T ss_dssp CGGGGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 999988777776543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.8e-34 Score=283.86 Aligned_cols=230 Identities=18% Similarity=0.343 Sum_probs=186.6
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
++||+.+..+. .......+++|||||||++.+++ |...+..+ .... ++.+++++|||+++.+...+.. .+
T Consensus 160 v~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~ 232 (410)
T 2j0s_A 160 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG--FKEQIYDV---YRYLPPATQVVLISATLPHEILEMTNK--FM 232 (410)
T ss_dssp EECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT--THHHHHHH---HTTSCTTCEEEEEESCCCHHHHTTGGG--TC
T ss_pred EcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh--hHHHHHHH---HHhCccCceEEEEEcCCCHHHHHHHHH--Hc
Confidence 44555544432 23445679999999999999988 67665554 3444 4789999999999876653222 34
Q ss_pred CCCEEEec---CCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 105 QNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 105 ~~~~~~~~---~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
.++..+.. ....+++............+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (410)
T 2j0s_A 233 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQ 312 (410)
T ss_dssp SSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCH
T ss_pred CCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCH
Confidence 45554432 233445555555444445678888888887777799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 182 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 182 ~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||.|+.|.+++|+.+.|...++.+.
T Consensus 313 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 313 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp HHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred Hhc
Q 016133 262 SKN 264 (394)
Q Consensus 262 ~~~ 264 (394)
+..
T Consensus 393 ~~~ 395 (410)
T 2j0s_A 393 QYY 395 (410)
T ss_dssp HHT
T ss_pred HHh
Confidence 644
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=285.60 Aligned_cols=236 Identities=19% Similarity=0.302 Sum_probs=175.6
Q ss_pred ccEEEeCCceecChHHHHHH-HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.+|+++||+.+. ..+ ........+++|||||||++.+|+ |...+..+ +....++.++++||||+++.+..
T Consensus 160 ~~iiv~T~~~l~-----~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~ 230 (414)
T 3eiq_A 160 PHIIVGTPGRVF-----DMLNRRYLSPKYIKMFVLDEADEMLSRG--FKDQIYDI--FQKLNSNTQVVLLSATMPSDVLE 230 (414)
T ss_dssp CSEEEECHHHHH-----HHHHHTSSCSTTCCEEEECSHHHHHHTT--THHHHHHH--HTTSCTTCEEEEECSCCCHHHHH
T ss_pred CCEEEECHHHHH-----HHHHcCCcccccCcEEEEECHHHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHH
Confidence 567766666442 222 233446679999999999999887 66655543 33333589999999999988776
Q ss_pred HHHHHhCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceE
Q 016133 97 DVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 173 (394)
Q Consensus 97 ~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~ 173 (394)
.+.. .+.++..+... ...+++............+...+..++.....+++||||++++.++.+++.|.+.++.+.
T Consensus 231 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 308 (414)
T 3eiq_A 231 VTKK--FMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 308 (414)
T ss_dssp HHTT--TCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHH--HcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEE
Confidence 4333 33455544332 233444444444444556888899999888888999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 174 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 174 ~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
.+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|++|.|++++.+.|
T Consensus 309 ~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 309 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp EC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 016133 254 RRRMEFILSKN 264 (394)
Q Consensus 254 ~~~~~~i~~~~ 264 (394)
...++.+.+..
T Consensus 389 ~~~~~~~~~~~ 399 (414)
T 3eiq_A 389 KRTLRDIETFY 399 (414)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.2e-34 Score=281.52 Aligned_cols=234 Identities=21% Similarity=0.305 Sum_probs=187.7
Q ss_pred ccEEEeCCceecChHHHHHH-H-hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKL-K-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~-~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+.+ ..+ . .......+++|||||||++.+.+ |+..+.. +...+ ++.+++++|||+++.+
T Consensus 140 ~~Ivv~T~~~l------~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~---i~~~~~~~~~~i~lSAT~~~~~ 208 (400)
T 1s2m_A 140 VHILVGTPGRV------LDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQ---ILSFLPPTHQSLLFSATFPLTV 208 (400)
T ss_dssp CSEEEECHHHH------HHHHHTTCSCCTTCCEEEEESHHHHSSHH--HHHHHHH---HHTTSCSSCEEEEEESCCCHHH
T ss_pred CCEEEEchHHH------HHHHHhCCcccccCCEEEEeCchHhhhhc--hHHHHHH---HHHhCCcCceEEEEEecCCHHH
Confidence 45666665543 322 2 23446779999999999988644 5554444 44444 4789999999999988
Q ss_pred HHHHHHHhCCCCCEEEe--cCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCce
Q 016133 95 QKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 172 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~~--~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~ 172 (394)
...+...+. .+..+. .....+++........ ...+...+..+++....+++||||++++.++.+++.|.+.|+.+
T Consensus 209 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 285 (400)
T 1s2m_A 209 KEFMVKHLH--KPYEINLMEELTLKGITQYYAFVE-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSC 285 (400)
T ss_dssp HHHHHHHCS--SCEEESCCSSCBCTTEEEEEEECC-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHcC--CCeEEEeccccccCCceeEEEEec-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCe
Confidence 876666554 343332 2233445544333332 34677788888888878899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 173 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 173 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.|++++++.
T Consensus 286 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~ 365 (400)
T 1s2m_A 286 YYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 365 (400)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcc
Q 016133 253 DRRRMEFILSKNQ 265 (394)
Q Consensus 253 d~~~~~~i~~~~~ 265 (394)
|...++.+.+...
T Consensus 366 ~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 366 DRFNLYKIEQELG 378 (400)
T ss_dssp GHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhC
Confidence 9999888877543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-33 Score=277.06 Aligned_cols=231 Identities=21% Similarity=0.291 Sum_probs=185.2
Q ss_pred eecChHHHHHHH-h--hccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHH
Q 016133 27 LTATPGFMSKLK-K--IHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 27 ~v~tp~~~~~l~-~--~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
+++||+.+..+. + ......+++|||||||++.+ ++ |...+..+ .... ++.+++++|||+++.+.......
T Consensus 147 vv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 221 (412)
T 3fht_A 147 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKV 221 (412)
T ss_dssp EEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT--THHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred EEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC--cHHHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHh
Confidence 456666655443 2 23346799999999999987 44 66655544 3333 47899999999999887755544
Q ss_pred hCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC
Q 016133 102 LCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178 (394)
Q Consensus 102 l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~ 178 (394)
+ .++..+... ...+++............+...+..++....++++||||++++.++.++..|.+.++.+..+||+
T Consensus 222 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 299 (412)
T 3fht_A 222 V--PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE 299 (412)
T ss_dssp S--SSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTT
T ss_pred c--CCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 4 445544332 33455555555556667788888888887777899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC------CCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++| .+..+|+||+||+||.|+.|.+++++++.
T Consensus 300 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 300 MMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 999999999999999999999999999999999999999999999 57899999999999999999999999876
Q ss_pred c-HHHHHHHHHhc
Q 016133 253 D-RRRMEFILSKN 264 (394)
Q Consensus 253 d-~~~~~~i~~~~ 264 (394)
+ ...++.+.+..
T Consensus 380 ~~~~~~~~i~~~~ 392 (412)
T 3fht_A 380 HSMNILNRIQEHF 392 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5 55566555443
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.1e-33 Score=273.30 Aligned_cols=232 Identities=16% Similarity=0.236 Sum_probs=181.3
Q ss_pred ccEEEeCCceecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+. +..+. .......+++|||||||++.+|. +|+..+..+ .... ++.+++++|||+++..
T Consensus 129 ~~iiv~T~~~------l~~~~~~~~~~~~~~~~vViDEaH~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~ 198 (391)
T 1xti_A 129 PHIVVGTPGR------ILALARNKSLNLKHIKHFILDECDKMLEQL-DMRRDVQEI---FRMTPHEKQVMMFSATLSKEI 198 (391)
T ss_dssp CSEEEECHHH------HHHHHHTTSSCCTTCSEEEECSHHHHTSSH-HHHHHHHHH---HHTSCSSSEEEEEESSCCSTH
T ss_pred CCEEEECHHH------HHHHHHcCCccccccCEEEEeCHHHHhhcc-chHHHHHHH---HhhCCCCceEEEEEeeCCHHH
Confidence 3566555553 33332 22345779999999999998762 366655554 3334 4789999999999988
Q ss_pred HHHHHHHhCCCCCEEEecCC----CCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC
Q 016133 95 QKDVMESLCLQNPLVLKSSF----NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 170 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~~----~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~ 170 (394)
...+...+ ..+..+.... ...++....... ....+...+..+++...++++||||++++.++.+++.|.+.|+
T Consensus 199 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 275 (391)
T 1xti_A 199 RPVCRKFM--QDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275 (391)
T ss_dssp HHHHHHHC--SSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCeEEEecCccccCcccceEEEEEc-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC
Confidence 77555544 3444443221 223343333332 2356777888888888888999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEe
Q 016133 171 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 171 ~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|++|.+++++.
T Consensus 276 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccH-HHHHHHHH
Q 016133 251 MDDR-RRMEFILS 262 (394)
Q Consensus 251 ~~d~-~~~~~i~~ 262 (394)
+.+. ..++.+.+
T Consensus 356 ~~~~~~~~~~~~~ 368 (391)
T 1xti_A 356 DENDAKILNDVQD 368 (391)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 7754 44454444
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.7e-33 Score=274.27 Aligned_cols=228 Identities=19% Similarity=0.304 Sum_probs=181.5
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
++||+.+..+ ........+++|||||||++.+ ++ |...+..+ .... ++.+++++|||+++.+.......+
T Consensus 126 v~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~- 199 (395)
T 3pey_A 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG--LGDQCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIV- 199 (395)
T ss_dssp EECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT--HHHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS-
T ss_pred EEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc--cHHHHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhC-
Confidence 4455544433 2334467799999999999987 44 66655544 3333 478999999999988776544443
Q ss_pred CCCCEEEe---cCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 104 LQNPLVLK---SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 104 ~~~~~~~~---~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
.++..+. .....+++............+...+..++....++++||||++++.++.+++.|++.|+.+..+||+++
T Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 278 (395)
T 3pey_A 200 -PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQ 278 (395)
T ss_dssp -CSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSC
T ss_pred -CCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 3333332 233445565555555555677888888888777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC------CHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|. |+..|+||+||+||.|+.|.+++++.+.+.
T Consensus 279 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 279 TQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999987654
Q ss_pred HH-HHHHHH
Q 016133 255 RR-MEFILS 262 (394)
Q Consensus 255 ~~-~~~i~~ 262 (394)
.. ++.+.+
T Consensus 359 ~~~~~~i~~ 367 (395)
T 3pey_A 359 FNILSAIQK 367 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44 444433
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-32 Score=266.71 Aligned_cols=215 Identities=21% Similarity=0.357 Sum_probs=176.7
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeE
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~ 120 (394)
.....+++||+||||++.+|+ |...+..+ +....++.+++++|||+++.....+...++ ++..+..... .++.
T Consensus 143 ~~~~~~~~iIiDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 215 (367)
T 1hv8_A 143 LNLKNVKYFILDEADEMLNMG--FIKDVEKI--LNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIE 215 (367)
T ss_dssp SCTTSCCEEEEETHHHHHTTT--THHHHHHH--HHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSE
T ss_pred cccccCCEEEEeCchHhhhhc--hHHHHHHH--HHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCce
Confidence 345678999999999999887 66655554 223335889999999999988776555543 3333333322 2333
Q ss_pred EEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 121 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 121 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
...... ....+...+..+++ ..+.++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||
T Consensus 216 ~~~~~~-~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 293 (367)
T 1hv8_A 216 QSYVEV-NENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293 (367)
T ss_dssp EEEEEC-CGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEE
T ss_pred EEEEEe-ChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 333322 23567778888776 4456899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 201 aT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
||+++++|+|+|++++||++++|.|+.+|+||+||+||.|++|.+++++++.|...++.+.+..
T Consensus 294 ~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 357 (367)
T 1hv8_A 294 ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAM 357 (367)
T ss_dssp ECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHH
T ss_pred ECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988877654
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=300.52 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=112.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC------CCceEEecCC--------CCHHHHHHHHHHHhcCCCeEEEeccccccccC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 210 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 210 (394)
++++||||++++.++.+++.|.+. |+.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 679999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHH--------HHHHHhcccCCCCccchhHhhhh-h
Q 016133 211 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM--------EFILSKNQSKNSQSFSTRERSSK-K 281 (394)
Q Consensus 211 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~--------~~i~~~~~~~~~~~~~~~~~~~~-~ 281 (394)
+|+|++|||||+|.|+..|+||+|||||.| +.+++++..++.... +.++......... .+ .++..+ .
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i 555 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQN-MK-PEEYAHKI 555 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTS-SC-HHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhcc-CC-HHHHHHHH
Confidence 999999999999999999999999988776 445555444432211 1122221111111 11 112222 2
Q ss_pred hhhhHHHHHHHhhcccchHHHHHhhhCCCCC
Q 016133 282 SISDFSQMVDYCEGSGCRRKKILESFGEQIP 312 (394)
Q Consensus 282 ~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~ 312 (394)
....+..+..++....|+++..+.||++...
T Consensus 556 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (699)
T 4gl2_A 556 LELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 586 (699)
T ss_dssp HHHHHHHHHHCCSCCC----------CCSEE
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhcCcceeE
Confidence 2234567888888899999999999998753
No 15
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-32 Score=297.42 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=184.5
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC---CCCEEEecCCCCCC
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPN 118 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~~~n 118 (394)
....+++|||||||++.+|++ ...+..+ +....+++++++||||+++.. ++..+++. ....++.......+
T Consensus 144 ~l~~l~lvViDEaH~l~d~~~--g~~~e~i--i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~p 217 (997)
T 4a4z_A 144 LIRDVEFVIFDEVHYVNDQDR--GVVWEEV--IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVP 217 (997)
T ss_dssp GGGGEEEEEECCTTCCCTTCT--TCCHHHH--HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSC
T ss_pred hhcCCCEEEEECcccccccch--HHHHHHH--HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCcc
Confidence 346799999999999999984 4445554 333334799999999997654 44555542 22223333333333
Q ss_pred eEEEEEEcC-----------------------------------------------------------------------
Q 016133 119 LFYEVRYKD----------------------------------------------------------------------- 127 (394)
Q Consensus 119 l~~~v~~~~----------------------------------------------------------------------- 127 (394)
+.+.+....
T Consensus 218 l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~ 297 (997)
T 4a4z_A 218 LEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANR 297 (997)
T ss_dssp EEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------------------
T ss_pred ceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 322221100
Q ss_pred ---------------------chhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC----------------
Q 016133 128 ---------------------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI---------------- 170 (394)
Q Consensus 128 ---------------------~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~---------------- 170 (394)
.....+..+...+...+..++||||+|++.|+.++..|.+.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 377 (997)
T 4a4z_A 298 GGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKS 377 (997)
T ss_dssp -------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 0123355677777777778999999999999999999987665
Q ss_pred -----------------------ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC---
Q 016133 171 -----------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--- 224 (394)
Q Consensus 171 -----------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~--- 224 (394)
.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+ ..||++++|+
T Consensus 378 ~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg 456 (997)
T 4a4z_A 378 ITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDG 456 (997)
T ss_dssp HTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEET
T ss_pred HHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccC
Confidence 4789999999999999999999999999999999999999999 6666666665
Q ss_pred ------CHHHHHHHHhhcccCC--CCceEEEEE--ecccHHHHHHHHHhcccCCCCc-cchhH---hhhhhhhhhHHHHH
Q 016133 225 ------SMEAFYQESGRAGRDQ--LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQS-FSTRE---RSSKKSISDFSQMV 290 (394)
Q Consensus 225 ------s~~~y~Qr~GRagR~g--~~g~~i~l~--~~~d~~~~~~i~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ 290 (394)
|+.+|+||+|||||.| ..|.+++++ .+.+...++.++.......... ....+ .........++.|+
T Consensus 457 ~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l 536 (997)
T 4a4z_A 457 NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMI 536 (997)
T ss_dssp TEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHH
T ss_pred ccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHH
Confidence 9999999999999999 567788887 4456677777765443321111 01111 01111122345555
Q ss_pred HHh------hcccchHHHHHhhhCCCCCCCCcCCCCCCCCC
Q 016133 291 DYC------EGSGCRRKKILESFGEQIPVSLCKNSCDACKH 325 (394)
Q Consensus 291 ~~~------~~~~Crr~~l~~~f~~~~~~~~c~~~Cd~C~~ 325 (394)
+++ +...|++...+.+|++......|. .||+|..
T Consensus 537 ~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 537 KYSFSENAKETLQPEHEKQIKVLQEELQTIEYK-SCEICDN 576 (997)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh-ccccccc
Confidence 554 456799999999999875544566 6999964
No 16
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-34 Score=281.43 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=47.1
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCC---CCC
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRP 117 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~ 117 (394)
.....+++||+||||++.+++ |+..+..+ +....++.+++++|||+++.....+...+ ..+..+.... ..+
T Consensus 158 ~~~~~~~~vIiDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (394)
T 1fuu_A 158 FRTDKIKMFILDEADEMLSSG--FKEQIYQI--FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLE 231 (394)
T ss_dssp SCCTTCCEEEEETHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC------
T ss_pred cchhhCcEEEEEChHHhhCCC--cHHHHHHH--HHhCCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCC
Confidence 345679999999999999887 77766665 22233578999999999998776555544 3444333221 222
Q ss_pred CeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 016133 118 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197 (394)
Q Consensus 118 nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 197 (394)
++............+...+..+++....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 311 (394)
T 1fuu_A 232 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 311 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc
Confidence 32222222222233556666777666677999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHH
Q 016133 198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 198 iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.+++++.+.|...++.+.+
T Consensus 312 vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 312 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877766654
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=1e-31 Score=257.76 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=164.9
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeE
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~ 120 (394)
....+++||+||||++.+|+ |...+.. +....+ ..+++++|||+++.....+...+ .++..+......+++.
T Consensus 126 ~~~~~~~iViDEah~~~~~~--~~~~~~~---~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 198 (337)
T 2z0m_A 126 DLSSFEIVIIDEADLMFEMG--FIDDIKI---ILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVE 198 (337)
T ss_dssp CGGGCSEEEEESHHHHHHTT--CHHHHHH---HHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEE
T ss_pred chhhCcEEEEEChHHhhccc--cHHHHHH---HHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCce
Confidence 34668999999999999988 6655444 444444 66778899999998877666554 3444555444555565
Q ss_pred EEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 121 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 121 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
......... .......+....++++||||++++.++.+++.|. .+..+||+++..+|.+++++|++|+.+|||
T Consensus 199 ~~~~~~~~~---~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 271 (337)
T 2z0m_A 199 HKFVHVKDD---WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLI 271 (337)
T ss_dssp EEEEECSSS---SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEEeChH---HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 554443321 1222355566777899999999999999999886 578999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 201 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 201 aT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
||+++++|+|+|++++||++++|.|+..|+||+||+||.|++|.+++|+. .|...++.+.
T Consensus 272 ~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 272 TTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp ECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred EcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 7766666554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=9.7e-32 Score=266.51 Aligned_cols=236 Identities=14% Similarity=0.205 Sum_probs=172.4
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCC---------CCCHHH-HHHHH
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG---------HDFRPS-YRKLS 72 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g---------~~fr~~-~~~l~ 72 (394)
++...+..+..+. .+|+++||+.+. .+........+++|||||||++++|| .+|++. +..+.
T Consensus 105 ~~~~~~~~l~~~~--~~Iiv~Tp~~l~------~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~ 176 (414)
T 3oiy_A 105 EKEKFEKSFEEDD--YHILVFSTQFVS------KNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAF 176 (414)
T ss_dssp HHHHHHHHHHHTC--CSEEEEEHHHHH------HCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHhhcCC--CCEEEECHHHHH------HHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHH
Confidence 3456677777775 578877776442 22223555679999999999999877 668887 55553
Q ss_pred HHHH------h---CCCCCEEEEeec-CChhHHHHHHH-HhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHH
Q 016133 73 SLRN------Y---LPDVPILALTAT-AAPKVQKDVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 141 (394)
Q Consensus 73 ~l~~------~---~~~~~~l~lSAT-~~~~~~~~i~~-~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~ 141 (394)
.... . .++.+++++||| .+..+...+.. .+.... .......+++....... .+...+..+++
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~----~~~~~l~~~l~ 249 (414)
T 3oiy_A 177 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHVRISS----RSKEKLVELLE 249 (414)
T ss_dssp HHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEEEESS----CCHHHHHHHHH
T ss_pred HhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc---Cccccccccchheeecc----CHHHHHHHHHH
Confidence 3322 1 157899999999 45444333333 222211 11223344554444433 23445566666
Q ss_pred hCCCccEEEEeCcHHHHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCeEEEe----ccccccccCCCC-cc
Q 016133 142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VR 215 (394)
Q Consensus 142 ~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~ 215 (394)
.. ++++||||++++.++.++..|.+.|+.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ |+
T Consensus 250 ~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 250 IF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp HH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred Hc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccC
Confidence 53 46899999999999999999999999998 99994 344 99999999999999 999999999999 99
Q ss_pred EEEEecCC--CCHHHHHHHHhhcccCC----CCceEEEEEecccHHHHHHHHH
Q 016133 216 LVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 216 ~VI~~~~p--~s~~~y~Qr~GRagR~g----~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
+||+|++| .++.+|+||+|||||.| +.|.+++++ .|...++.+.+
T Consensus 323 ~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 323 YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 99999999 99999999999999988 589999999 55555555443
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.8e-33 Score=281.10 Aligned_cols=234 Identities=18% Similarity=0.276 Sum_probs=154.8
Q ss_pred ccEEEeCCceecChHHHHHH-HhhccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+.+. ..+ ........+++|||||||++++ ++ |...+..+ ...+ ++.|++++|||+++.+
T Consensus 236 ~~Ivv~T~~~l~-----~~l~~~~~~~~~~~lIIiDEaH~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~ 305 (508)
T 3fho_A 236 AQIVIGTPGTVM-----DLMKRRQLDARDIKVFVLDEADNMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERV 305 (508)
T ss_dssp CSEEEECHHHHH-----HHHHTTCSCCTTCCEEEECCHHHHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHH
T ss_pred CCEEEECHHHHH-----HHHHcCCccccCCCEEEEechhhhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHH
Confidence 456655555432 122 2233467799999999999987 44 66665554 3333 4789999999999877
Q ss_pred HHHHHHHhCCCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 95 QKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
.......+ .++..+... ...+++............+...+..++....++++||||++++.++.++..|.+.++.
T Consensus 306 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~ 383 (508)
T 3fho_A 306 EKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT 383 (508)
T ss_dssp HHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCC
T ss_pred HHHHHHhc--CCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCc
Confidence 66444333 334333222 2223333333333344567777888887777789999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC------CCHHHHHHHHhhcccCCCCceE
Q 016133 172 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKS 245 (394)
Q Consensus 172 ~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~ 245 (394)
+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .|+..|+||+||+||.|++|.+
T Consensus 384 v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~ 463 (508)
T 3fho_A 384 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 463 (508)
T ss_dssp CCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEE
Confidence 9999999999999999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred EEEEec-ccHHHHHHHHHh
Q 016133 246 LLYYGM-DDRRRMEFILSK 263 (394)
Q Consensus 246 i~l~~~-~d~~~~~~i~~~ 263 (394)
++|+.+ .+...++.+.+.
T Consensus 464 i~l~~~~~~~~~~~~i~~~ 482 (508)
T 3fho_A 464 INFVHDKKSWEEMNAIQEY 482 (508)
T ss_dssp EEEECTTTSSSSHHHHHHH
T ss_pred EEEEeChHHHHHHHHHHHH
Confidence 999984 445555555443
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=1.9e-33 Score=284.18 Aligned_cols=228 Identities=21% Similarity=0.300 Sum_probs=52.7
Q ss_pred eecChHHHHHHH-h--hccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHH
Q 016133 27 LTATPGFMSKLK-K--IHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 27 ~v~tp~~~~~l~-~--~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
+|+||+.+..+. + .....++++|||||||++++ ++ |...+.. +.... ++.|++++|||+++.+.......
T Consensus 214 vv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 288 (479)
T 3fmp_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (479)
T ss_dssp EEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT--HHHHHHH---HHTTSCTTSEEEEEESCCCHHHHHHHHHH
T ss_pred EEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC--cHHHHHH---HHhhCCccceEEEEeCCCCHHHHHHHHHH
Confidence 456777665543 2 33446799999999999986 44 5554444 33333 47899999999999887654443
Q ss_pred hCCCCCEEEecCCC---CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC
Q 016133 102 LCLQNPLVLKSSFN---RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178 (394)
Q Consensus 102 l~~~~~~~~~~~~~---~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~ 178 (394)
+.++..+..... ..++...+........+...+..++......++||||++++.++.++..|...++.+..+||+
T Consensus 289 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~ 366 (479)
T 3fmp_B 289 --VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGE 366 (479)
T ss_dssp --SSSEEEEEEC--------------------------------------------------------------------
T ss_pred --cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCC
Confidence 345554443322 222222222222234566677777776667799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCC------CCHHHHHHHHhhcccCCCCceEEEEEecc
Q 016133 179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 252 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 252 (394)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+...|+||+|||||.|+.|.+++|+++.
T Consensus 367 ~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 367 MMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 999999999999999999999999999999999999999999999 56789999999999999999999999876
Q ss_pred c-HHHHHHHH
Q 016133 253 D-RRRMEFIL 261 (394)
Q Consensus 253 d-~~~~~~i~ 261 (394)
+ ...++.+.
T Consensus 447 ~~~~~~~~i~ 456 (479)
T 3fmp_B 447 HSMNILNRIQ 456 (479)
T ss_dssp ----------
T ss_pred chHHHHHHHH
Confidence 5 44444443
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.3e-30 Score=274.89 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhC----CCccEEEEeCcHHHHHHHHHHHHhCC----CceEEe--------cCCCCHHHHHHHHHHHhc-
Q 016133 131 DAYADLCSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS- 193 (394)
Q Consensus 131 ~~~~~l~~~l~~~----~~~~~IVF~~s~~~~~~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~- 193 (394)
.++..|..++... +++++||||++++.++.+++.|.+.| +.+..+ ||+|++++|.+++++|++
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 3555666666543 56789999999999999999999988 888888 569999999999999998
Q ss_pred CCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHh---cccCCCC
Q 016133 194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQ 270 (394)
Q Consensus 194 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~---~~~~~~~ 270 (394)
|+.+|||||+++++|||+|++++|||||+|.|+++|+||+|| ||. ++|.++++++..+......+... ....
T Consensus 460 g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~--- 534 (696)
T 2ykg_A 460 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND--- 534 (696)
T ss_dssp -CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHH---
T ss_pred CCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999999 998 78999999998887554433110 0000
Q ss_pred ccchhHhhhhhhhhh-HHHHHHHhhcccchHHHHHhhhCCCCCCCCcCCCCCCCCCc
Q 016133 271 SFSTRERSSKKSISD-FSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHP 326 (394)
Q Consensus 271 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~c~~~Cd~C~~~ 326 (394)
...+........ ..++.++.+...+.+.....+.... ....|...|++|..+
T Consensus 535 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~c~~~ 587 (696)
T 2ykg_A 535 ---SILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVP-DKENKKLLCRKCKAL 587 (696)
T ss_dssp ---HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-CCSCEEEEESSSCCE
T ss_pred ---HHHHhhccCHHHHHHHHHHHHHHHHHHHHHhhccCCcc-cccchhhhccCCCce
Confidence 000111111122 2456666666555555544432222 233455579999864
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-29 Score=274.18 Aligned_cols=216 Identities=17% Similarity=0.175 Sum_probs=153.0
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC--CCCCE-EEecCCCCCCe
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNL 119 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~--~~~~~-~~~~~~~~~nl 119 (394)
...+++|||||||++.+|+ |...+..+ +....++.++++||||+++... +..+++ ...+. ++........+
T Consensus 288 l~~l~lVVIDEaH~l~d~~--rg~~~e~i--i~~l~~~~qvl~lSATipn~~e--~a~~l~~~~~~~~~vi~~~~rp~pl 361 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKE--RGVVWEET--IILLPDKVRYVFLSATIPNAME--FAEWICKIHSQPCHIVYTNFRPTPL 361 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHH--HHHHHHHH--HHHSCTTSEEEEEECSCSSCHH--HHHHHHHHTCSCEEEEEECCCSSCE
T ss_pred cccCCEEEEhhhhhccccc--hHHHHHHH--HHhcCCCceEEEEcCCCCCHHH--HHHHHHhhcCCCeEEEecCCCcccc
Confidence 3468999999999999887 56655554 3333348999999999876532 222222 12232 33332222222
Q ss_pred EEEEEEcC------------c------------------------------------------hhhHHHHHHHHHHhCCC
Q 016133 120 FYEVRYKD------------L------------------------------------------LDDAYADLCSVLKANGD 145 (394)
Q Consensus 120 ~~~v~~~~------------~------------------------------------------~~~~~~~l~~~l~~~~~ 145 (394)
...+.... . ....+..+...+...+.
T Consensus 362 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~ 441 (1108)
T 3l9o_A 362 QHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKY 441 (1108)
T ss_dssp EEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTC
T ss_pred eEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCC
Confidence 22111100 0 02233344455555667
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCc---------------------------------------eEEecCCCCHHHHHH
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGIS---------------------------------------CAAYHAGLNDKARSS 186 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~ 186 (394)
.++||||+|++.|+.++..|...++. +..+||+|++.+|..
T Consensus 442 ~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~ 521 (1108)
T 3l9o_A 442 NPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 521 (1108)
T ss_dssp CCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHH
T ss_pred CCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHH
Confidence 79999999999999999998653322 789999999999999
Q ss_pred HHHHHhcCCCeEEEeccccccccCCCCccEEEEecC--------CCCHHHHHHHHhhcccCC--CCceEEEEEecc-cHH
Q 016133 187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRR 255 (394)
Q Consensus 187 ~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--------p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~-d~~ 255 (394)
+++.|++|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +..
T Consensus 522 v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 522 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp HHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred HHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH
Confidence 999999999999999999999999999999997665 348889999999999999 689999999876 455
Q ss_pred HHHHHHHhc
Q 016133 256 RMEFILSKN 264 (394)
Q Consensus 256 ~~~~i~~~~ 264 (394)
.++.++...
T Consensus 602 ~~~~l~~~~ 610 (1108)
T 3l9o_A 602 VAKGMVKGQ 610 (1108)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhcCC
Confidence 566666543
No 23
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=3.9e-28 Score=210.22 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=136.7
Q ss_pred CCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh
Q 016133 113 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 192 (394)
Q Consensus 113 ~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 192 (394)
+...+++...+.... ...++..|..+++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345667766665544 3678899999998877789999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 193 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 193 ~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
+|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|++|.+++|+.+.|...++.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888776543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=3.4e-28 Score=256.80 Aligned_cols=204 Identities=23% Similarity=0.238 Sum_probs=154.5
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEE
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~ 121 (394)
..++++|||||||++.+|+ +.+.+..+ ..++...++.++++||||+++ ..++.++++. ..+..+.....+..
T Consensus 136 l~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~ 208 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVE 208 (702)
T ss_dssp GGGCCEEEETTGGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEE
T ss_pred HhhcCEEEEeeeeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceE
Confidence 4579999999999999877 44555443 334445568999999999986 3566777763 22322222112211
Q ss_pred EEE------EcCc------hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC---------------------
Q 016133 122 EVR------YKDL------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------------------- 168 (394)
Q Consensus 122 ~v~------~~~~------~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~--------------------- 168 (394)
.+. .... .......+.+.+. +++++||||+|++.++.++..|.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~ 286 (702)
T 2p6r_A 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGE 286 (702)
T ss_dssp EEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSH
T ss_pred EEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccc
Confidence 111 0000 0114555555554 3568999999999999999998753
Q ss_pred ---------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEE----ec---CCCCHHHHHHH
Q 016133 169 ---------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQE 232 (394)
Q Consensus 169 ---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~---~p~s~~~y~Qr 232 (394)
+..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.|..+|+||
T Consensus 287 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr 366 (702)
T 2p6r_A 287 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQM 366 (702)
T ss_dssp HHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHH
T ss_pred ccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHH
Confidence 135788999999999999999999999999999999999999999999999 66 79999999999
Q ss_pred HhhcccCC--CCceEEEEEecccHH
Q 016133 233 SGRAGRDQ--LPSKSLLYYGMDDRR 255 (394)
Q Consensus 233 ~GRagR~g--~~g~~i~l~~~~d~~ 255 (394)
+|||||.| .+|.|+++++..+..
T Consensus 367 ~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 367 AGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred hhhcCCCCCCCCceEEEEecCccHH
Confidence 99999998 589999999988744
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.8e-28 Score=263.06 Aligned_cols=217 Identities=18% Similarity=0.209 Sum_probs=157.7
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhC--CCCCE-EEecCCCC
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNR 116 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~--~~~~~-~~~~~~~~ 116 (394)
.....+++|||||||++.++++ ...+.. +...+ ++.++++||||+++.. ++..+++ ...+. ++......
T Consensus 188 ~~l~~l~lVViDEaH~l~d~~r--g~~~e~---il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp 260 (1010)
T 2xgj_A 188 EVMREVAWVIFDEVHYMRDKER--GVVWEE---TIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRP 260 (1010)
T ss_dssp TTGGGEEEEEEETGGGGGCTTT--HHHHHH---HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCS
T ss_pred chhhcCCEEEEechhhhcccch--hHHHHH---HHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCc
Confidence 3456799999999999998873 333333 33344 4799999999998753 2334332 12232 22222222
Q ss_pred CCeEEEEEEcC-----------c-----------------------------------h--------hhHHHHHHHHHHh
Q 016133 117 PNLFYEVRYKD-----------L-----------------------------------L--------DDAYADLCSVLKA 142 (394)
Q Consensus 117 ~nl~~~v~~~~-----------~-----------------------------------~--------~~~~~~l~~~l~~ 142 (394)
..+...+.... . . ...+..+...+..
T Consensus 261 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~ 340 (1010)
T 2xgj_A 261 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK 340 (1010)
T ss_dssp SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH
T ss_pred ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh
Confidence 22222111100 0 0 1223334455555
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCc---------------------------------------eEEecCCCCHHH
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGIS---------------------------------------CAAYHAGLNDKA 183 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~---------------------------------------~~~~h~~l~~~~ 183 (394)
.+..++||||+|++.|+.++..|...++. +..+||+|++.+
T Consensus 341 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~e 420 (1010)
T 2xgj_A 341 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420 (1010)
T ss_dssp HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHH
Confidence 55668999999999999999999775442 788999999999
Q ss_pred HHHHHHHHhcCCCeEEEeccccccccCCCCccEEEE----ecC----CCCHHHHHHHHhhcccCCC--CceEEEEEecc-
Q 016133 184 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD- 252 (394)
Q Consensus 184 R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~~----p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~- 252 (394)
|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.|++++++.
T Consensus 421 R~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 421 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999999999999999999999999999999999999 999 8999999999999999996 59999999876
Q ss_pred cHHHHHHHHHhc
Q 016133 253 DRRRMEFILSKN 264 (394)
Q Consensus 253 d~~~~~~i~~~~ 264 (394)
+...+..++...
T Consensus 501 e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 501 EPQVAKGMVKGQ 512 (1010)
T ss_dssp CHHHHHHHHSCC
T ss_pred CHHHHHHHHhCC
Confidence 666677776543
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.4e-27 Score=252.74 Aligned_cols=219 Identities=21% Similarity=0.237 Sum_probs=156.2
Q ss_pred ccEEEeCCceecChHHHHHH-Hhh-ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KKI-HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~~-~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+|+++|||++ ..+ .+. ....++++|||||||++.+++ +.+.+..+ ....++.++++||||+++.
T Consensus 122 ~~Iiv~Tpe~l------~~~~~~~~~~l~~~~~vIiDE~H~l~~~~--~~~~l~~i---~~~~~~~~ii~lSATl~n~-- 188 (715)
T 2va8_A 122 YDIIITTYEKL------DSLWRHRPEWLNEVNYFVLDELHYLNDPE--RGPVVESV---TIRAKRRNLLALSATISNY-- 188 (715)
T ss_dssp CSEEEECHHHH------HHHHHHCCGGGGGEEEEEECSGGGGGCTT--THHHHHHH---HHHHHTSEEEEEESCCTTH--
T ss_pred CCEEEEcHHHH------HHHHhCChhHhhccCEEEEechhhcCCcc--cchHHHHH---HHhcccCcEEEEcCCCCCH--
Confidence 45665555543 333 222 225679999999999998765 45554443 3333489999999999853
Q ss_pred HHHHHHhCCCCCEEEecCCCCCCeE------------EEEEEcCc-------hhhHHHHHHHHHHhCCCccEEEEeCcHH
Q 016133 96 KDVMESLCLQNPLVLKSSFNRPNLF------------YEVRYKDL-------LDDAYADLCSVLKANGDTCAIVYCLERT 156 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~nl~------------~~v~~~~~-------~~~~~~~l~~~l~~~~~~~~IVF~~s~~ 156 (394)
.++.++++.. .+........+. +.+...+. .......+.+.+. .++++||||++++
T Consensus 189 ~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~ 263 (715)
T 2va8_A 189 KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRK 263 (715)
T ss_dssp HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHH
T ss_pred HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHH
Confidence 4667777632 222211111111 11222110 1344555555554 4578999999999
Q ss_pred HHHHHHHHHHhCC------------------------------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 157 TCDELSAYLSAGG------------------------------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 157 ~~~~l~~~L~~~g------------------------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
.++.++..|.+.. ..+..+||+|++++|..+++.|.+|+++|||
T Consensus 264 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlv 343 (715)
T 2va8_A 264 MAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343 (715)
T ss_dssp HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 9999999998642 2489999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEE----ec-------CCCCHHHHHHHHhhcccCC--CCceEEEEEecccH
Q 016133 201 ATVAFGMGIDRKDVRLVCH----FN-------IPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMDDR 254 (394)
Q Consensus 201 aT~~~~~GiD~p~v~~VI~----~~-------~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~ 254 (394)
||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .+|.|+++++..+.
T Consensus 344 aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 344 ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999999999999999999 99 8999999999999999998 48999999987763
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=2.5e-28 Score=250.02 Aligned_cols=124 Identities=21% Similarity=0.322 Sum_probs=66.6
Q ss_pred HHHHHHHHHHh----CCCccEEEEeCcHHHHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-C
Q 016133 132 AYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-S 194 (394)
Q Consensus 132 ~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g 194 (394)
++..|.+++.. .++.++||||+++..++.++..|.+. |.....+||+|++.+|.+++++|++ |
T Consensus 373 K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 452 (556)
T 4a2p_A 373 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 452 (556)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----------------------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC
Confidence 34444555533 56779999999999999999999876 5566777889999999999999999 9
Q ss_pred CCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHH
Q 016133 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 195 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 257 (394)
+++|||||+++++|||+|++++|||||+|.|+..|+||+|| ||. ++|.+++++.+.+....
T Consensus 453 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 453 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp -CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred ceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999999999999999999999999 999 78999999998776544
No 28
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=210.27 Aligned_cols=149 Identities=21% Similarity=0.329 Sum_probs=132.8
Q ss_pred CCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 016133 116 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 195 (394)
Q Consensus 116 ~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 195 (394)
.+++...+...+....++..|..+++..+++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34666666666555668999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeccccccccCCCCccEEEEecCC------CCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 196 KQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 196 ~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
.+|||||+++++|+|+|++++||+|++| .+..+|+||+||+||.|+.|.+++|+.+.+...++.+.+..
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 159 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999999999999999999999988888776654
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.7e-27 Score=238.17 Aligned_cols=124 Identities=23% Similarity=0.351 Sum_probs=111.1
Q ss_pred HHHHHHHHHHh----CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecC--------CCCHHHHHHHHHHHhcCCCeEE
Q 016133 132 AYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA--------GLNDKARSSVLDDWISSRKQVV 199 (394)
Q Consensus 132 ~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~--------~l~~~~R~~~~~~f~~g~~~iL 199 (394)
++..+.+++.. .++.++||||++++.++.+++.|.+.|+.+..+|| +++..+|.+++++|++|+.+||
T Consensus 344 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vL 423 (494)
T 1wp9_A 344 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 423 (494)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEE
Confidence 44455555554 56789999999999999999999999999999999 9999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHH
Q 016133 200 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 200 VaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~ 256 (394)
|||+++++|+|+|++++||+|++|.++..|.||+||+||.|+ |.++.++.+++...
T Consensus 424 v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred EECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 999999999999999999999999999999999999999998 99999999887554
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=1.2e-27 Score=253.27 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=158.9
Q ss_pred ccEEEeCCceecChHHHHHH-Hh-hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL-KK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~-~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+|+++|||++ ..+ .+ .....++++|||||||++.+++ +.+.+..+..... ++.++++||||+++.
T Consensus 115 ~~Iiv~Tpe~l------~~~~~~~~~~l~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~-- 182 (720)
T 2zj8_A 115 YDIIIATAEKF------DSLLRHGSSWIKDVKILVADEIHLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP-- 182 (720)
T ss_dssp CSEEEECHHHH------HHHHHHTCTTGGGEEEEEEETGGGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--
T ss_pred CCEEEECHHHH------HHHHHcChhhhhcCCEEEEECCcccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--
Confidence 45665555543 333 22 1224578999999999998876 4455544422211 378999999999763
Q ss_pred HHHHHHhCCCCCEEEecCCCCCCeEEEEE------EcCc----hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHH
Q 016133 96 KDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKDL----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL 165 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~~~~~nl~~~v~------~~~~----~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L 165 (394)
.++.++++.. .+........+...+. .... .......+.+.+.. ++++||||+|++.++.++..|
T Consensus 183 ~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L 257 (720)
T 2zj8_A 183 EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALEL 257 (720)
T ss_dssp HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHH
Confidence 4667777531 2222221111111111 1110 12344555555543 468999999999999999999
Q ss_pred HhC------------------C---------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC
Q 016133 166 SAG------------------G---------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 212 (394)
Q Consensus 166 ~~~------------------g---------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 212 (394)
.+. + ..+..+||+|++++|..+++.|++|+++|||||+++++|||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip 337 (720)
T 2zj8_A 258 SKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTP 337 (720)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCC
T ss_pred HHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCC
Confidence 753 1 2489999999999999999999999999999999999999999
Q ss_pred CccEEEE----ec----CCCCHHHHHHHHhhcccCC--CCceEEEEEecccHH
Q 016133 213 DVRLVCH----FN----IPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMDDRR 255 (394)
Q Consensus 213 ~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~ 255 (394)
++++||+ || .|.|..+|+||+|||||.| .+|.|++++...+..
T Consensus 338 ~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 338 AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp BSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred ceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999 76 6899999999999999998 578999999988744
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=1.5e-28 Score=266.51 Aligned_cols=123 Identities=21% Similarity=0.331 Sum_probs=72.7
Q ss_pred HHHHHHHHHHh----CCCccEEEEeCcHHHHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-C
Q 016133 132 AYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-S 194 (394)
Q Consensus 132 ~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g 194 (394)
++..|.++|.. .++.++||||++++.++.++..|.+. |.....+||+|+..+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 33444555544 35679999999999999999999986 5666778999999999999999999 9
Q ss_pred CCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHH
Q 016133 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 256 (394)
Q Consensus 195 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~ 256 (394)
+++|||||+++++|||+|+|++|||||+|.|+..|+||+|| ||. ++|.+++++...+...
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999999999999999 999 7899999998876643
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=3.2e-28 Score=266.51 Aligned_cols=239 Identities=15% Similarity=0.199 Sum_probs=169.1
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCC---------CCCHHH-HHHHH
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG---------HDFRPS-YRKLS 72 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g---------~~fr~~-~~~l~ 72 (394)
+|...++.+..|. .+|+++||+. +..+........+++|||||||++++++ .+|.+. +..+.
T Consensus 162 er~~~~~~l~~g~--~~IlV~Tp~r------L~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il 233 (1104)
T 4ddu_A 162 EKEKFEKSFEEDD--YHILVFSTQF------VSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAF 233 (1104)
T ss_dssp HHHHHHHHHHTSC--CSEEEEEHHH------HHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCEEEECHHH------HHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHH
Confidence 5567778888875 6788666654 4333223456679999999999887633 226766 55553
Q ss_pred HHHHh---------CCCCCEEEEeecC-ChhHHHHHHHH-hCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHH
Q 016133 73 SLRNY---------LPDVPILALTATA-APKVQKDVMES-LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 141 (394)
Q Consensus 73 ~l~~~---------~~~~~~l~lSAT~-~~~~~~~i~~~-l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~ 141 (394)
..... .++.|+++||||+ +..+...+... +.+. +.......+++...+.... +...|..+++
T Consensus 234 ~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~---v~~~~~~~~~i~~~~~~~~----k~~~L~~ll~ 306 (1104)
T 4ddu_A 234 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHVRISSR----SKEKLVELLE 306 (1104)
T ss_dssp HHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC---CCBCCCCCCCEEEEEESCC----CHHHHHHHHH
T ss_pred HhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE---eccCCCCcCCceeEEEecC----HHHHHHHHHH
Confidence 33220 1478999999994 44433233332 2211 1222344556655554442 3445566666
Q ss_pred hCCCccEEEEeCcHHHHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCeEEEe----ccccccccCCCC-cc
Q 016133 142 ANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VR 215 (394)
Q Consensus 142 ~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~ 215 (394)
.. ++++||||+|++.++.++..|...|+.+. .+|| +|.+ +++|++|+.+|||| |+++++|||+|+ |+
T Consensus 307 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 307 IF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp HH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred hc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 53 36899999999999999999999999998 9999 2555 99999999999999 999999999999 99
Q ss_pred EEEEecCCC-----------------------------------------------------------------------
Q 016133 216 LVCHFNIPK----------------------------------------------------------------------- 224 (394)
Q Consensus 216 ~VI~~~~p~----------------------------------------------------------------------- 224 (394)
+|||||+|.
T Consensus 380 ~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~ 459 (1104)
T 4ddu_A 380 YVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELII 459 (1104)
T ss_dssp EEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEE
T ss_pred EEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEe
Confidence 999999998
Q ss_pred -CHHHHHHHHhhcccCCCCc--eEEEEEecccHHHHHHHHHh
Q 016133 225 -SMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSK 263 (394)
Q Consensus 225 -s~~~y~Qr~GRagR~g~~g--~~i~l~~~~d~~~~~~i~~~ 263 (394)
+..+|+||+||+||.|..| .++.+.-.+|...++.+.+.
T Consensus 460 pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~ 501 (1104)
T 4ddu_A 460 PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTR 501 (1104)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHH
T ss_pred cChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHH
Confidence 7889999999999965433 34444444677766666554
No 33
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.7e-27 Score=215.16 Aligned_cols=137 Identities=27% Similarity=0.404 Sum_probs=128.1
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccc
Q 016133 129 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208 (394)
Q Consensus 129 ~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 208 (394)
...++..|..+++...++++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36788999999988778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhcc
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 265 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~ 265 (394)
+|+|++++||+|++|.+...|+||+||+||.|++|.|++|+++.+...++.+.+...
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998888876544
No 34
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.7e-27 Score=206.63 Aligned_cols=135 Identities=21% Similarity=0.373 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 209 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 209 (394)
..+...|..+++..+++++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 15 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 44888999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 210 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 210 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
|+|++++||+|++|.++..|+||+||+||.|++|.+++++.+.+...++.+.+..
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 149 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHS
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888776543
No 35
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.95 E-value=5.7e-28 Score=246.99 Aligned_cols=125 Identities=24% Similarity=0.332 Sum_probs=87.2
Q ss_pred HHHHHHHHHHh----CCCccEEEEeCcHHHHHHHHHHHHhCC------------CceEEecCCCCHHHHHHHHHHHhc-C
Q 016133 132 AYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-S 194 (394)
Q Consensus 132 ~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g 194 (394)
+...|.+++.. .++.++||||++++.++.++..|...+ .....+||+|++.+|.+++++|++ |
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 33444444433 456799999999999999999999864 345566779999999999999999 9
Q ss_pred CCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHH
Q 016133 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 258 (394)
Q Consensus 195 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 258 (394)
+++|||||+++++|||+|++++|||||+|.|+..|+||+|| ||. ++|.+++|+.+.+.....
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 99999999999999999999999999999999999999999 998 899999999988776553
No 36
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.9e-27 Score=205.79 Aligned_cols=134 Identities=18% Similarity=0.364 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 209 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 209 (394)
..+...|..+++..+++++||||++++.++.++..|...|+++..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 57889999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc-cHHHHHHHHHh
Q 016133 210 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 263 (394)
Q Consensus 210 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~-d~~~~~~i~~~ 263 (394)
|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+.+. +...++.+.+.
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 45556665543
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=2.3e-28 Score=244.33 Aligned_cols=194 Identities=14% Similarity=0.110 Sum_probs=134.3
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEE
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~ 121 (394)
...++++|||||||++ +. .|...+..+..+.. .++.++++||||+++.+.. ......+... .....+
T Consensus 96 ~~~~l~~vViDEah~~-~~--~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~~~----~~~~~~~~~~-~~~~~~---- 162 (440)
T 1yks_A 96 RVVNWEVIIMDEAHFL-DP--ASIAARGWAAHRAR-ANESATILMTATPPGTSDE----FPHSNGEIED-VQTDIP---- 162 (440)
T ss_dssp CCCCCSEEEETTTTCC-SH--HHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEE-EECCCC----
T ss_pred cccCccEEEEECcccc-Cc--chHHHHHHHHHHhc-cCCceEEEEeCCCCchhhh----hhhcCCCeeE-eeeccC----
Confidence 4678999999999998 22 23333333333332 3579999999999887532 1111111111 000000
Q ss_pred EEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEe
Q 016133 122 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 201 (394)
Q Consensus 122 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 201 (394)
....... ...+... ++++||||+|++.++.+++.|++.|+++..+|| ++|.++++.|++|+++||||
T Consensus 163 ----~~~~~~~----~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVa 229 (440)
T 1yks_A 163 ----SEPWNTG----HDWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILA 229 (440)
T ss_dssp ----SSCCSSS----CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEE
T ss_pred ----hHHHHHH----HHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEE
Confidence 0011111 1223333 568999999999999999999999999999999 46889999999999999999
Q ss_pred ccccccccCCCCccEEEE-------------------ecCCCCHHHHHHHHhhcccC-CCCceEEEEE---ecccHHHHH
Q 016133 202 TVAFGMGIDRKDVRLVCH-------------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRME 258 (394)
Q Consensus 202 T~~~~~GiD~p~v~~VI~-------------------~~~p~s~~~y~Qr~GRagR~-g~~g~~i~l~---~~~d~~~~~ 258 (394)
|+++++|||+| +++||| ++.|.+.++|+||+||+||. |++|.|++|+ ++.|...++
T Consensus 230 T~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~ 308 (440)
T 1yks_A 230 TDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVC 308 (440)
T ss_dssp SSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHH
T ss_pred CChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhh
Confidence 99999999999 999997 89999999999999999997 6899999997 566666655
Q ss_pred HHHH
Q 016133 259 FILS 262 (394)
Q Consensus 259 ~i~~ 262 (394)
.+..
T Consensus 309 ~l~~ 312 (440)
T 1yks_A 309 WLEA 312 (440)
T ss_dssp HHHH
T ss_pred hhhH
Confidence 5543
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.1e-26 Score=255.72 Aligned_cols=226 Identities=19% Similarity=0.192 Sum_probs=172.3
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
++..+++.+..|. .+|+++||+++ .+.....++++|||||||++ |.. .... +....++.+
T Consensus 694 ~~~~~~~~l~~g~--~dIvV~T~~ll---------~~~~~~~~l~lvIiDEaH~~---g~~---~~~~---l~~l~~~~~ 753 (1151)
T 2eyq_A 694 EQTQILAEVAEGK--IDILIGTHKLL---------QSDVKFKDLGLLIVDEEHRF---GVR---HKER---IKAMRANVD 753 (1151)
T ss_dssp HHHHHHHHHHTTC--CSEEEECTHHH---------HSCCCCSSEEEEEEESGGGS---CHH---HHHH---HHHHHTTSE
T ss_pred HHHHHHHHHhcCC--CCEEEECHHHH---------hCCccccccceEEEechHhc---ChH---HHHH---HHHhcCCCC
Confidence 4667788888886 78998888644 33345678999999999984 421 1222 333345789
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecC-CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 161 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l 161 (394)
+++||||+.+..... ...++.++.++..+ ..+.++...+..... ......+...+ ..+++++|||++++.++.+
T Consensus 754 vl~lSATp~p~~l~~--~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~-~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l 828 (1151)
T 2eyq_A 754 ILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYDS-MVVREAILREI--LRGGQVYYLYNDVENIQKA 828 (1151)
T ss_dssp EEEEESSCCCHHHHH--HHTTTSEEEECCCCCCBCBCEEEEEEECCH-HHHHHHHHHHH--TTTCEEEEECCCSSCHHHH
T ss_pred EEEEcCCCChhhHHH--HHhcCCCceEEecCCCCccccEEEEecCCH-HHHHHHHHHHH--hcCCeEEEEECCHHHHHHH
Confidence 999999999887663 33344444443332 233344443333321 22233333333 2467899999999999999
Q ss_pred HHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC-CCCHHHHHHHHhhccc
Q 016133 162 SAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-PKSMEAFYQESGRAGR 238 (394)
Q Consensus 162 ~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-p~s~~~y~Qr~GRagR 238 (394)
++.|++. +..+..+||+|++.+|.+++++|.+|+.+|||||+++++|+|+|++++||+++. +.++..|+||+||+||
T Consensus 829 ~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 829 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9999987 789999999999999999999999999999999999999999999999999998 5699999999999999
Q ss_pred CCCCceEEEEEeccc
Q 016133 239 DQLPSKSLLYYGMDD 253 (394)
Q Consensus 239 ~g~~g~~i~l~~~~d 253 (394)
.|+.|.|++++.+.+
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999997653
No 39
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=206.99 Aligned_cols=149 Identities=21% Similarity=0.381 Sum_probs=120.9
Q ss_pred CCCCeEEEEEEcCchhhHHHHHHHHHHhC-CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 115 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 115 ~~~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
..+++...+.... ...++..|.++++.. ++.++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 16 ~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 4567766666544 357888898988876 56789999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhc
Q 016133 194 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 264 (394)
Q Consensus 194 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~ 264 (394)
|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+.+.|...++.+.+..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 165 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 165 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777766543
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.9e-28 Score=257.51 Aligned_cols=227 Identities=22% Similarity=0.234 Sum_probs=164.8
Q ss_pred hHHHHHHHHhcCCCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCC
Q 016133 3 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 82 (394)
Q Consensus 3 ~r~~i~~~l~~g~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~ 82 (394)
+|.++++.+.+|. .+|+++||+++ .......++++|||||+|++ |...+. .++...++.+
T Consensus 459 ~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaHr~---g~~qr~------~l~~~~~~~~ 518 (780)
T 1gm5_A 459 EKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQHRF---GVKQRE------ALMNKGKMVD 518 (780)
T ss_dssp HHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCCCC--------C------CCCSSSSCCC
T ss_pred HHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccchh---hHHHHH------HHHHhCCCCC
Confidence 5677889999986 78998888644 23455678999999999985 322221 1333335789
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEec-CCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcH------
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER------ 155 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~------ 155 (394)
+++||||+.+.... ....+..+..++.. +..+.++...+.........+..+...+ ..+++++|||+++
T Consensus 519 vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l 594 (780)
T 1gm5_A 519 TLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKL 594 (780)
T ss_dssp EEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHT--TTSCCBCCBCCCC------
T ss_pred EEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhh
Confidence 99999999887765 23333333333322 3334444433332222222223333222 3456899999965
Q ss_pred --HHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCC-CHHHH
Q 016133 156 --TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAF 229 (394)
Q Consensus 156 --~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y 229 (394)
..++.+++.|.+ .++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||++++|. +.+.|
T Consensus 595 ~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l 674 (780)
T 1gm5_A 595 NVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQL 674 (780)
T ss_dssp --CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHH
T ss_pred hHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHH
Confidence 457889999988 478899999999999999999999999999999999999999999999999999996 78999
Q ss_pred HHHHhhcccCCCCceEEEEEeccc
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
.||+||+||.|++|.|++++++.+
T Consensus 675 ~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 675 HQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp HHHHHTSCCSSTTCEEECCCCSCC
T ss_pred HHHhcccCcCCCCCEEEEEECCCC
Confidence 999999999999999999998533
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=1.6e-27 Score=239.04 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=143.6
Q ss_pred ecChHHH-HHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCC
Q 016133 28 TATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 106 (394)
Q Consensus 28 v~tp~~~-~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~ 106 (394)
+.|++.+ ..+.+.....++++|||||||++ +++ +......+ ..+...++.++++||||+++.... +...+
T Consensus 92 ~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~~~~~~~~i~~SAT~~~~~~~-----~~~~~ 162 (451)
T 2jlq_A 92 LMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRVEMGEAAAIFMTATPPGSTDP-----FPQSN 162 (451)
T ss_dssp EEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHHHTTSCEEEEECSSCTTCCCS-----SCCCS
T ss_pred EEChHHHHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhhcCCCceEEEEccCCCccchh-----hhcCC
Confidence 3466643 34455555678999999999987 222 22222222 223345689999999999876533 11223
Q ss_pred CEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHH
Q 016133 107 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 186 (394)
Q Consensus 107 ~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 186 (394)
+.++......|...+ ..+..++... ++++||||+|++.++.+++.|.+.|+.+..+||.+. .+
T Consensus 163 ~~~~~~~~~~p~~~~------------~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~ 225 (451)
T 2jlq_A 163 SPIEDIEREIPERSW------------NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DT 225 (451)
T ss_dssp SCEEEEECCCCSSCC------------SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HH
T ss_pred CceEecCccCCchhh------------HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HH
Confidence 333322222221111 0112233333 458999999999999999999999999999999764 57
Q ss_pred HHHHHhcCCCeEEEeccccccccCCCCccEEEEec--------------------CCCCHHHHHHHHhhcccCCC-CceE
Q 016133 187 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------------IPKSMEAFYQESGRAGRDQL-PSKS 245 (394)
Q Consensus 187 ~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~--------------------~p~s~~~y~Qr~GRagR~g~-~g~~ 245 (394)
+++.|++|+.+|||||+++++|||+|+ ++||||| .|.|.++|+||+|||||.|. +|.+
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 899999999999999999999999999 9999999 99999999999999999998 8899
Q ss_pred EEEEec
Q 016133 246 LLYYGM 251 (394)
Q Consensus 246 i~l~~~ 251 (394)
++|+..
T Consensus 305 ~~~~~~ 310 (451)
T 2jlq_A 305 YVFSGD 310 (451)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 888753
No 42
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=205.90 Aligned_cols=157 Identities=18% Similarity=0.305 Sum_probs=125.3
Q ss_pred CCCCEEEecC---CCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 104 LQNPLVLKSS---FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 104 ~~~~~~~~~~---~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+.+|..+... ...+++...+.... ...++..|.+++...+ +++||||++++.++.+++.|...|+.+..+||+++
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~ 89 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 89 (191)
T ss_dssp ----------------CCSEEEEEECC-GGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSC
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4455444332 23456666555544 3578888988887754 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecc-cHHHHHH
Q 016133 181 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEF 259 (394)
Q Consensus 181 ~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~-d~~~~~~ 259 (394)
+.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++. +...++.
T Consensus 90 ~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~ 169 (191)
T 2p6n_A 90 QEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMD 169 (191)
T ss_dssp HHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 5555555
Q ss_pred HHH
Q 016133 260 ILS 262 (394)
Q Consensus 260 i~~ 262 (394)
+.+
T Consensus 170 l~~ 172 (191)
T 2p6n_A 170 LKA 172 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=4.7e-27 Score=243.54 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=145.1
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeE
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~ 120 (394)
....++++|||||||++ +.+ |...+..+..... .++.|+++||||+++.+.. +...++..+......+.
T Consensus 273 ~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~~-- 341 (618)
T 2whx_A 273 TRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVE-MGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPE-- 341 (618)
T ss_dssp SSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCS--
T ss_pred ccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhc-ccCccEEEEECCCchhhhh-----hhccCCceeeecccCCH--
Confidence 34678999999999998 322 5555545433322 1589999999999877532 11123322222211111
Q ss_pred EEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 121 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 121 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
. .+..+...+... ++++||||+|++.++.+++.|.+.|+.+..+||. +|.++++.|++|+.+|||
T Consensus 342 ------~----~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 342 ------R----SWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp ------S----CCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred ------H----HHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 0 011122233333 5589999999999999999999999999999985 688899999999999999
Q ss_pred eccccccccCCCCccEE--------------------EEecCCCCHHHHHHHHhhcccCCC-CceEEEEEe---cccHHH
Q 016133 201 ATVAFGMGIDRKDVRLV--------------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRR 256 (394)
Q Consensus 201 aT~~~~~GiD~p~v~~V--------------------I~~~~p~s~~~y~Qr~GRagR~g~-~g~~i~l~~---~~d~~~ 256 (394)
||+++++|||+| |++| |+|+.|.|.++|+||+||+||.|. .|.+++|+. +.|...
T Consensus 407 aTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 407 TTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred ECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 999999999997 9888 788889999999999999999975 899999997 777666
Q ss_pred HHHHHH
Q 016133 257 MEFILS 262 (394)
Q Consensus 257 ~~~i~~ 262 (394)
++.+.+
T Consensus 486 l~~le~ 491 (618)
T 2whx_A 486 AHWTEA 491 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655544
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=6.3e-27 Score=248.28 Aligned_cols=218 Identities=17% Similarity=0.183 Sum_probs=161.4
Q ss_pred eecChHHHHH-HHhhccCCCccEEEEecCCc-cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 27 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 27 ~v~tp~~~~~-l~~~~~~~~l~~iVvDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
.++|||.+.. +........+++|||||+|. .++. ...+..+..+....++.++++||||++.. .+.++++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~- 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN- 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccch----HHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-
Confidence 3456665543 33444567899999999996 3221 11123455566667889999999999764 3344443
Q ss_pred CCCEEEecCCCCCCeEEEEEEcCc---hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHh-----------CCC
Q 016133 105 QNPLVLKSSFNRPNLFYEVRYKDL---LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGI 170 (394)
Q Consensus 105 ~~~~~~~~~~~~~nl~~~v~~~~~---~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~-----------~g~ 170 (394)
..+. +.......++......... ....+..+..++....++++||||+++++++.++..|.+ .++
T Consensus 261 ~~~v-i~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 261 DAPL-LAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp SCCE-EECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred CCCc-ccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 2333 3332222222221111111 123344555555555678999999999999999999985 578
Q ss_pred ceEEecCCCCHHHHHHHHHHHh-----cCCCeEEEeccccccccCCCCccEEEEecC------------------CCCHH
Q 016133 171 SCAAYHAGLNDKARSSVLDDWI-----SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSME 227 (394)
Q Consensus 171 ~~~~~h~~l~~~~R~~~~~~f~-----~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~ 227 (394)
.+..+||+|++++|..+++.|. +|+.+|||||+++++|||+|+|++||++++ |.|.+
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~ 419 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKA 419 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHH
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHH
Confidence 8999999999999999999999 999999999999999999999999999888 89999
Q ss_pred HHHHHHhhcccCCCCceEEEEEecccH
Q 016133 228 AFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 228 ~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
+|+||+|||||. .+|.|+.+|++.+.
T Consensus 420 s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 420 SAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999 79999999987765
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=1.7e-26 Score=247.00 Aligned_cols=124 Identities=21% Similarity=0.322 Sum_probs=72.3
Q ss_pred HHHHHHHHHHh----CCCccEEEEeCcHHHHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-C
Q 016133 132 AYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-S 194 (394)
Q Consensus 132 ~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g 194 (394)
++..|..++.. .++.++||||++++.++.++..|.+. |..+..+||+|++.+|..++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp HHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 34445555543 56689999999999999999999874 5567778999999999999999999 9
Q ss_pred CCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHH
Q 016133 195 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 257 (394)
Q Consensus 195 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 257 (394)
+++|||||+++++|||+|++++|||||+|.|+..|+||+|| ||. ++|.+++|+.+.+....
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 99999999999999999999999999999999999999999 999 89999999988776543
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=2.3e-27 Score=259.44 Aligned_cols=220 Identities=16% Similarity=0.216 Sum_probs=155.2
Q ss_pred ecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHH----Hh-CCCCCEEEEeecCChhHHH---HHH
Q 016133 28 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQK---DVM 99 (394)
Q Consensus 28 v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~----~~-~~~~~~l~lSAT~~~~~~~---~i~ 99 (394)
++||+++..+... ++.+++|||||||++++||+++++.+..++... .. .+..|++++|||+++. .. .+.
T Consensus 160 V~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~ 236 (1054)
T 1gku_B 160 ITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELF 236 (1054)
T ss_dssp EEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHH
T ss_pred EEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHh
Confidence 4455554443222 557999999999999999877666655443110 11 1368899999999886 21 111
Q ss_pred -HHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC
Q 016133 100 -ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178 (394)
Q Consensus 100 -~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~ 178 (394)
...... +.......+++.+.+.. ..+...|..+++.. ++++||||+|++.|+.++..|++. +++..+||+
T Consensus 237 ~~~~~i~---v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~ 307 (1054)
T 1gku_B 237 RQLLNFD---IGSSRITVRNVEDVAVN----DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTAT 307 (1054)
T ss_dssp HHHHCCC---CSCCEECCCCEEEEEES----CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTS
T ss_pred hcceEEE---ccCcccCcCCceEEEec----hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEecc
Confidence 122211 11112233455444442 23445566666655 468999999999999999999988 999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEe----ccccccccCCCCc-cEEEEecCC------------------------------
Q 016133 179 LNDKARSSVLDDWISSRKQVVVA----TVAFGMGIDRKDV-RLVCHFNIP------------------------------ 223 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~v-~~VI~~~~p------------------------------ 223 (394)
+ ..+++.|++|+.+|||| |+++++|||+|+| ++|||+|+|
T Consensus 308 ~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1054)
T 1gku_B 308 K-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEI 382 (1054)
T ss_dssp S-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHH
T ss_pred H-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHH
Confidence 8 37789999999999999 9999999999995 999999999
Q ss_pred -----------------------------------------CCHHHHHHHHhhcccCCCCc--eEEEEEecccHHHHHHH
Q 016133 224 -----------------------------------------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFI 260 (394)
Q Consensus 224 -----------------------------------------~s~~~y~Qr~GRagR~g~~g--~~i~l~~~~d~~~~~~i 260 (394)
.+..+|+||+|||||.|..| .++.++..+|...++.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l 462 (1054)
T 1gku_B 383 ERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAF 462 (1054)
T ss_dssp HTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHH
Confidence 79999999999999988775 47888888887777666
Q ss_pred HHhc
Q 016133 261 LSKN 264 (394)
Q Consensus 261 ~~~~ 264 (394)
.+..
T Consensus 463 ~~~l 466 (1054)
T 1gku_B 463 IERA 466 (1054)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=9.4e-27 Score=242.96 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=139.4
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeE
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 120 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~ 120 (394)
....++++|||||||++. ..+...+..+..+.. .++.++++||||+++.+.. ......+.. ....
T Consensus 328 ~~l~~l~lvViDEaH~~~---~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~-~v~~------ 392 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFTD---PASIAARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVH-DVSS------ 392 (673)
T ss_dssp SCCCCCSEEEEESTTCCC---HHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEE-EEEC------
T ss_pred cccccceEEEEeCCcccC---ccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceE-EEee------
Confidence 356789999999999982 112223333333322 2578999999999876432 111111211 1000
Q ss_pred EEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 121 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 121 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
.... .....+...+.. .++++||||+|++.++.+++.|++.++.+..+||. +|.++++.|++|+.+|||
T Consensus 393 ---~~~~---~~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLV 461 (673)
T 2wv9_A 393 ---EIPD---RAWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVI 461 (673)
T ss_dssp ---CCCS---SCCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEE
T ss_pred ---ecCH---HHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEE
Confidence 0000 001111222333 46689999999999999999999999999999994 789999999999999999
Q ss_pred eccccccccCCCCccEEEE--------------------ecCCCCHHHHHHHHhhcccC-CCCceEEEEE---ecccHHH
Q 016133 201 ATVAFGMGIDRKDVRLVCH--------------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRR 256 (394)
Q Consensus 201 aT~~~~~GiD~p~v~~VI~--------------------~~~p~s~~~y~Qr~GRagR~-g~~g~~i~l~---~~~d~~~ 256 (394)
||+++++|||+| +++||| |++|.+.++|+||+||+||. |+.|.|++|+ ++.|...
T Consensus 462 aTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~ 540 (673)
T 2wv9_A 462 TTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTML 540 (673)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTB
T ss_pred ECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHH
Confidence 999999999999 999998 66899999999999999999 7899999996 4666544
Q ss_pred HHHH
Q 016133 257 MEFI 260 (394)
Q Consensus 257 ~~~i 260 (394)
++.+
T Consensus 541 l~~i 544 (673)
T 2wv9_A 541 AHWT 544 (673)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 48
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=6e-26 Score=215.12 Aligned_cols=136 Identities=26% Similarity=0.396 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccccccc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 209 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 209 (394)
..++..|..+++...++++||||+|++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 56888999999877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHHhcc
Q 016133 210 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 265 (394)
Q Consensus 210 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~~~~ 265 (394)
|+|++++||+|++|.+...|+||+|||||.|++|.|++|+++.+...++.+.+...
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988888876544
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=8.7e-26 Score=255.58 Aligned_cols=271 Identities=18% Similarity=0.155 Sum_probs=181.2
Q ss_pred ecChHHHHHHHhhcc----CCCccEEEEecCCccccCCCCCHHHHHH----HHHHHHhC-CCCCEEEEeecCChhHHHHH
Q 016133 28 TATPGFMSKLKKIHS----RGLLNLVAIDEAHCISSWGHDFRPSYRK----LSSLRNYL-PDVPILALTATAAPKVQKDV 98 (394)
Q Consensus 28 v~tp~~~~~l~~~~~----~~~l~~iVvDEaH~l~~~g~~fr~~~~~----l~~l~~~~-~~~~~l~lSAT~~~~~~~~i 98 (394)
|+||+.+..+.+... ...+++||+||+|++.+. ..+.+.. +..+.... +++|+++||||+++. .++
T Consensus 1025 V~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dl 1099 (1724)
T 4f92_B 1025 ISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDV 1099 (1724)
T ss_dssp EECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHH
T ss_pred EECHHHHHHHHhCcccccccceeeEEEeechhhcCCC---CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHH
Confidence 445554444433221 346999999999998763 2444433 22233333 478999999999864 477
Q ss_pred HHHhCCCCCEEEecC-CCCC-CeEEEEEEcCc--hhhHH----HHHHHHH-HhCCCccEEEEeCcHHHHHHHHHHHHhC-
Q 016133 99 MESLCLQNPLVLKSS-FNRP-NLFYEVRYKDL--LDDAY----ADLCSVL-KANGDTCAIVYCLERTTCDELSAYLSAG- 168 (394)
Q Consensus 99 ~~~l~~~~~~~~~~~-~~~~-nl~~~v~~~~~--~~~~~----~~l~~~l-~~~~~~~~IVF~~s~~~~~~l~~~L~~~- 168 (394)
.+||+......+... ..|| .+...+..... ..... ..+...+ +..+++++||||+|++.|+.+|..|...
T Consensus 1100 a~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~ 1179 (1724)
T 4f92_B 1100 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTC 1179 (1724)
T ss_dssp HHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHH
Confidence 899987765444332 2333 23333332221 11111 1122222 3356778999999999999988776431
Q ss_pred ---------------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCcc
Q 016133 169 ---------------------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 215 (394)
Q Consensus 169 ---------------------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~ 215 (394)
..++.+|||||++.+|..+++.|++|.++|||||+++++|||+|.+.
T Consensus 1180 ~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~ 1259 (1724)
T 4f92_B 1180 AADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1259 (1724)
T ss_dssp HHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSE
T ss_pred hhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccE
Confidence 12588999999999999999999999999999999999999999999
Q ss_pred EEEE----------ecCCCCHHHHHHHHhhcccCCC--CceEEEEEecccHHHHHHHHHhcccCCCCccchh-----Hhh
Q 016133 216 LVCH----------FNIPKSMEAFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR-----ERS 278 (394)
Q Consensus 216 ~VI~----------~~~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~d~~~~~~i~~~~~~~~~~~~~~~-----~~~ 278 (394)
+||. ...|.++.+|+||+|||||.|. .|.|++++.+.+...++.++....+-.+...... .+.
T Consensus 1260 VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI 1339 (1724)
T 4f92_B 1260 VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI 1339 (1724)
T ss_dssp EEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHH
T ss_pred EEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHH
Confidence 9993 3357899999999999999996 7999999999999999988876544222211110 111
Q ss_pred hhhhhhhHHHHHHHhhcccchHHHH
Q 016133 279 SKKSISDFSQMVDYCEGSGCRRKKI 303 (394)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~Crr~~l 303 (394)
........+..++|...+-..|+..
T Consensus 1340 ~~~~i~~~~d~~~~l~~Tfl~~r~~ 1364 (1724)
T 4f92_B 1340 VTKTIENKQDAVDYLTWTFLYRRMT 1364 (1724)
T ss_dssp HTTSCCBHHHHHHHHTTSSHHHHHH
T ss_pred HhcccCCHHHHHHHHHhhHHHHHHh
Confidence 1122233455666666655544443
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=5.7e-26 Score=237.00 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc
Q 016133 129 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 129 ~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
...++..|...+.. ..++++||||+|++.++.++..|.+.|+++..+||++.+.+|..+.++|+.| .|+|||++++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 35677777777653 2466899999999999999999999999999999999888887666666555 6999999999
Q ss_pred cccCCC--------CccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccH
Q 016133 207 MGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 207 ~GiD~p--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
||+|++ ++.+||+|++|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999998774
No 51
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=3.9e-28 Score=211.69 Aligned_cols=145 Identities=23% Similarity=0.302 Sum_probs=129.0
Q ss_pred CeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 016133 118 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 197 (394)
Q Consensus 118 nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 197 (394)
++.+.+...+....++..|..+++..+++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 44333333333356778888888877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEecccHHHHHHHHH
Q 016133 198 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 198 iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~~ 262 (394)
|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++++.+.|...++.+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 99999999999999999999999999999999999999999999999999999988777666554
No 52
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.93 E-value=2.2e-26 Score=237.64 Aligned_cols=195 Identities=23% Similarity=0.252 Sum_probs=136.2
Q ss_pred eecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCC
Q 016133 27 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 106 (394)
Q Consensus 27 ~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~ 106 (394)
+++||+++. -.......++++|||||||++.. +|.+.+..+.......+...++++|||+++.+ ....
T Consensus 301 lV~TPGrLl-~~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i--------~~~~ 368 (666)
T 3o8b_A 301 TYSTYGKFL-ADGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVVLATATPPGSV--------TVPH 368 (666)
T ss_dssp EEEEHHHHH-HTTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEEEEESSCTTCC--------CCCC
T ss_pred EEECcHHHH-hCCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEEEECCCCCccc--------ccCC
Confidence 345555541 12334456799999999997652 35655555433332222334788899998742 1222
Q ss_pred CEEE--ecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHH
Q 016133 107 PLVL--KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 184 (394)
Q Consensus 107 ~~~~--~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R 184 (394)
+.+. ...... .+.+...... +....++++||||+|++.++.+++.|++.|+.+..+||+|++++
T Consensus 369 p~i~~v~~~~~~-~i~~~~~~~~------------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e- 434 (666)
T 3o8b_A 369 PNIEEVALSNTG-EIPFYGKAIP------------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV- 434 (666)
T ss_dssp TTEEEEECBSCS-SEEETTEEEC------------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-
T ss_pred cceEEEeecccc-hhHHHHhhhh------------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-
Confidence 2221 111111 1111000000 12335679999999999999999999999999999999999875
Q ss_pred HHHHHHHhcCCCeEEEeccccccccCCCCccEEE----------Eec-----------CCCCHHHHHHHHhhcccCCCCc
Q 016133 185 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN-----------IPKSMEAFYQESGRAGRDQLPS 243 (394)
Q Consensus 185 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI----------~~~-----------~p~s~~~y~Qr~GRagR~g~~g 243 (394)
|.++..+|||||+++++|||+| |++|| ||| .|.+.++|+||+||+|| |++|
T Consensus 435 ------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G 506 (666)
T 3o8b_A 435 ------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG 506 (666)
T ss_dssp ------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE
T ss_pred ------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC
Confidence 4566679999999999999997 99999 666 89999999999999999 9999
Q ss_pred eEEEEEecccHHH
Q 016133 244 KSLLYYGMDDRRR 256 (394)
Q Consensus 244 ~~i~l~~~~d~~~ 256 (394)
. +.|+.+.|...
T Consensus 507 ~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 507 I-YRFVTPGERPS 518 (666)
T ss_dssp E-EEESCCCCBCS
T ss_pred E-EEEEecchhhc
Confidence 9 99998877544
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.93 E-value=6.9e-27 Score=234.96 Aligned_cols=184 Identities=17% Similarity=0.168 Sum_probs=133.1
Q ss_pred HHhhccCCCccEEEEecCCcc-----ccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEe
Q 016133 37 LKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK 111 (394)
Q Consensus 37 l~~~~~~~~l~~iVvDEaH~l-----~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~ 111 (394)
+.......++++|||||||++ ..+| .+.. +...++.++++||||+++.+.. ......|....
T Consensus 104 l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~~-~~~~~~~~~il~SAT~~~~~~~----~~~~~~pi~~~ 170 (459)
T 2z83_A 104 LMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIAT-KVELGEAAAIFMTATPPGTTDP----FPDSNAPIHDL 170 (459)
T ss_dssp HHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHHH-HHHTTSCEEEEECSSCTTCCCS----SCCCSSCEEEE
T ss_pred hhccccccCCcEEEEECCccCCchhhHHHH--------HHHH-HhccCCccEEEEEcCCCcchhh----hccCCCCeEEe
Confidence 333345678999999999984 2222 1111 2234689999999999876422 11112232221
Q ss_pred cCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 016133 112 SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 191 (394)
Q Consensus 112 ~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 191 (394)
.. ..+. .....+..++... ++++||||+|++.++.+++.|++.|+.+..+||. +|..+++.|
T Consensus 171 ~~-~~~~------------~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 171 QD-EIPD------------RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp EC-CCCS------------SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGS
T ss_pred cc-cCCc------------chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhc
Confidence 10 0010 0001112233333 5689999999999999999999999999999995 678899999
Q ss_pred hcCCCeEEEeccccccccCCCCccEEEE--------------------ecCCCCHHHHHHHHhhcccCCC-CceEEEEEe
Q 016133 192 ISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG 250 (394)
Q Consensus 192 ~~g~~~iLVaT~~~~~GiD~p~v~~VI~--------------------~~~p~s~~~y~Qr~GRagR~g~-~g~~i~l~~ 250 (394)
++|+.+|||||+++++|||+|+ ++||+ |+.|.|.++|+||+|||||.|. +|.+++|+.
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99999 6799999999999999999997 999999998
Q ss_pred cc
Q 016133 251 MD 252 (394)
Q Consensus 251 ~~ 252 (394)
+.
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=1e-26 Score=236.58 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=149.9
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHH
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 95 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~ 95 (394)
..+|+++||+.+.... ......+++|||||||++.. +. +..+...+ +..++++||||++....
T Consensus 204 ~~~I~i~T~~~l~~~~-------~~~~~~~~liIiDE~H~~~~------~~---~~~il~~~~~~~~~l~lSATp~~~~~ 267 (510)
T 2oca_A 204 DAPVVVGTWQTVVKQP-------KEWFSQFGMMMNDECHLATG------KS---ISSIISGLNNCMFKFGLSGSLRDGKA 267 (510)
T ss_dssp TCSEEEEEHHHHTTSC-------GGGGGGEEEEEEETGGGCCH------HH---HHHHGGGCTTCCEEEEEESCGGGCSS
T ss_pred CCcEEEEeHHHHhhch-------hhhhhcCCEEEEECCcCCCc------cc---HHHHHHhcccCcEEEEEEeCCCCCcc
Confidence 3678888887554431 12234589999999999864 22 33354455 57789999999966532
Q ss_pred HHHHHHhCCCCCEEEecC--------CCCCCeEEEEEEcC-----------chh----------hHHHHHHHHHHhC---
Q 016133 96 KDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD-----------LLD----------DAYADLCSVLKAN--- 143 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~--------~~~~nl~~~v~~~~-----------~~~----------~~~~~l~~~l~~~--- 143 (394)
. +....++..+.++..+ ...+.....+.... ... .+...+..++...
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 346 (510)
T 2oca_A 268 N-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQK 346 (510)
T ss_dssp C-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred c-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 2 1111111122222211 11111111111110 001 1222344444332
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEec-cccccccCCCCccEEEEecC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-VAFGMGIDRKDVRLVCHFNI 222 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiD~p~v~~VI~~~~ 222 (394)
++.++|||++ ++.++.+++.|.+.+.++..+||+++..+|.++++.|.+|+.+||||| +++++|+|+|++++||++++
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~ 425 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG 425 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC
Confidence 4556677777 889999999999998899999999999999999999999999999999 99999999999999999999
Q ss_pred CCCHHHHHHHHhhcccCCCCceEEEEEe
Q 016133 223 PKSMEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 223 p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
|.++..|+|++||+||.|+.+.++++|+
T Consensus 426 ~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 426 VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999998886666665
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=5.9e-26 Score=226.37 Aligned_cols=187 Identities=17% Similarity=0.111 Sum_probs=132.2
Q ss_pred HHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCC
Q 016133 37 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR 116 (394)
Q Consensus 37 l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~ 116 (394)
+.......++++|||||||++..+ +......+..+. ..++.++++||||+++.+.. +... +
T Consensus 85 l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~~~-----~~~~----------~ 145 (431)
T 2v6i_A 85 LLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTTEA-----FPPS----------N 145 (431)
T ss_dssp HHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCCCS-----SCCC----------S
T ss_pred HhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcchhh-----hcCC----------C
Confidence 333444678999999999997422 223333333332 24589999999999975321 1111 1
Q ss_pred CCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 016133 117 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 196 (394)
Q Consensus 117 ~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 196 (394)
+.+........ ......+..++... ++++||||++++.++.+++.|++.++.+..+||+ +|.+++++|++|+.
T Consensus 146 ~~i~~~~~~~~--~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~ 218 (431)
T 2v6i_A 146 SPIIDEETRIP--DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKW 218 (431)
T ss_dssp SCCEEEECCCC--SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCC
T ss_pred CceeeccccCC--HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCC
Confidence 11111000000 01112223344444 4589999999999999999999999999999997 57889999999999
Q ss_pred eEEEeccccccccCCCCccE-----------------EEEecCCCCHHHHHHHHhhcccCCCCceEEEEEe
Q 016133 197 QVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 197 ~iLVaT~~~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+||.|..+.++++|.
T Consensus 219 ~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 219 DFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp SEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred eEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999 544 6889999999999999999999996554555543
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.93 E-value=2e-25 Score=242.44 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCC--CeEEEecccccc
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGM 207 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~~~ 207 (394)
.+...|..+++...+.++||||+++..++.++..|.+ .|+++..+||+|++.+|..++++|++|+ ++|||||+++++
T Consensus 489 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 489 PRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp HHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 4677888888887788999999999999999999995 5999999999999999999999999998 999999999999
Q ss_pred ccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEEe
Q 016133 208 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 208 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
|+|+|++++||+|++|.++..|.|++||+||.|+.+.+++++.
T Consensus 569 GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 569 GRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp SSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred CCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999987666643
No 57
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=4.8e-25 Score=230.49 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=150.4
Q ss_pred ccEEEEecCCccc-cCCCCCHHHHHHHHHHHHhC-------------------CCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 46 LNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 46 l~~iVvDEaH~l~-~~g~~fr~~~~~l~~l~~~~-------------------~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
-.+|||||+|++. +|++.|+..+..+..+...- ...+++++|||+++..... ..
T Consensus 326 ~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~------~~ 399 (664)
T 1c4o_A 326 DFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH------SG 399 (664)
T ss_dssp TCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH------CS
T ss_pred ccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh------hh
Confidence 3589999999865 56655665554444433210 2467899999998764321 01
Q ss_pred CCEEEecC-----CCCCCeEEEEEEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCC
Q 016133 106 NPLVLKSS-----FNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAG 178 (394)
Q Consensus 106 ~~~~~~~~-----~~~~nl~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~ 178 (394)
.++... ...|. +.+.... .....+...+.. ..+.++||||+|++.++.+++.|.+.|+++..+||+
T Consensus 400 --~~~~~~~r~~~l~~p~--i~v~~~~---~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~ 472 (664)
T 1c4o_A 400 --RVVEQIIRPTGLLDPL--VRVKPTE---NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHE 472 (664)
T ss_dssp --EEEEECSCTTCCCCCE--EEEECST---THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred --CeeeeeeccCCCCCCe--EEEeccc---chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCC
Confidence 111111 12222 2222221 223333333322 145689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC-----CCCHHHHHHHHhhcccCCCCceEEEEEeccc
Q 016133 179 LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 253 (394)
Q Consensus 179 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 253 (394)
+++.+|.++++.|++|+++|||||+++++|+|+|+|++||+++. |.|..+|+||+|||||.| +|.+++|+++.+
T Consensus 473 ~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 473 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred CCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999997 899999999999999995 899999999887
Q ss_pred HHHHHHHH
Q 016133 254 RRRMEFIL 261 (394)
Q Consensus 254 ~~~~~~i~ 261 (394)
....+.+.
T Consensus 552 ~~~~~~i~ 559 (664)
T 1c4o_A 552 EAMQRAIE 559 (664)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655554
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.93 E-value=4.2e-25 Score=228.74 Aligned_cols=227 Identities=17% Similarity=0.179 Sum_probs=144.0
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
+.+|+++||+.+........+.+......+++|||||||++...+ +..+..+...+++.++++||||+......
T Consensus 274 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~------~~~~~~il~~~~~~~~l~lTATP~~~~~~ 347 (590)
T 3h1t_A 274 SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD------NSNWREILEYFEPAFQIGMTATPLREDNR 347 (590)
T ss_dssp SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------------CHHHHHHSTTSEEEEEESSCSCTTTH
T ss_pred CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc------hHHHHHHHHhCCcceEEEeccccccccch
Confidence 356777777765432110011223344568999999999987643 12334466677788999999998866554
Q ss_pred HHHHHhCCCCCEEEe------cCCCCCCeEEEEEEc---------------------------Cch----------hhHH
Q 016133 97 DVMESLCLQNPLVLK------SSFNRPNLFYEVRYK---------------------------DLL----------DDAY 133 (394)
Q Consensus 97 ~i~~~l~~~~~~~~~------~~~~~~nl~~~v~~~---------------------------~~~----------~~~~ 133 (394)
.....++... ..+. .....|...+.+... ... ....
T Consensus 348 ~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~ 426 (590)
T 3h1t_A 348 DTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFA 426 (590)
T ss_dssp HHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHH
T ss_pred hHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHH
Confidence 4444443210 0000 011111111111110 000 0111
Q ss_pred HHHHHHHHh-CCCccEEEEeCcHHHHHHHHHHHHhCCC--------ceEEecCCCCHHHHHHHHHHHhcCCCe---EEEe
Q 016133 134 ADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCAAYHAGLNDKARSSVLDDWISSRKQ---VVVA 201 (394)
Q Consensus 134 ~~l~~~l~~-~~~~~~IVF~~s~~~~~~l~~~L~~~g~--------~~~~~h~~l~~~~R~~~~~~f~~g~~~---iLVa 201 (394)
..+..+++. ...+++||||+++++|+.++..|.+.+. .+..+||.++. +|.+++++|++|+.+ |||+
T Consensus 427 ~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvt 505 (590)
T 3h1t_A 427 KHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTT 505 (590)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEE
T ss_pred HHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEE
Confidence 223333443 3457999999999999999999987543 26788998754 799999999998866 8899
Q ss_pred ccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCC--CceEEEEEec
Q 016133 202 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYYGM 251 (394)
Q Consensus 202 T~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~ 251 (394)
|+++++|+|+|++++||++++|.|+..|+|++||+||.|. .+...++++.
T Consensus 506 t~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 506 SQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp SSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred CChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 9999999999999999999999999999999999999875 4444445543
No 59
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=4.8e-25 Score=230.39 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=130.8
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEec---CCCCCCeEEEEEEcCchhhHHHHHHHHHHh--CCCccEEEEeCc
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLE 154 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s 154 (394)
..+++++|||+++..... . ........ +...|. +.+... ......+...+.. ..+.++||||+|
T Consensus 386 ~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-----T-DEMVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-----C-SSCEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCEEEEecCCChhHHHh-----h-hCeeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 577899999998764321 0 11111111 112222 223222 1233333333322 245689999999
Q ss_pred HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC-----CCCHHHH
Q 016133 155 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAF 229 (394)
Q Consensus 155 ~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-----p~s~~~y 229 (394)
+..++.+++.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.|..+|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccHHHHHHHH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~i~ 261 (394)
+||+|||||. .+|.+++|+++.+....+.+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999998 789999999988766555443
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=2.5e-24 Score=224.28 Aligned_cols=202 Identities=16% Similarity=0.196 Sum_probs=145.0
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEE
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 121 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~ 121 (394)
...+++|||||||++.+.+ |...+..+ +.... ++.+++++|||. .....+....+ ....+........+.+
T Consensus 237 ~~~v~lvVIDEaH~l~d~~--~g~~~~~~--l~~l~~~~i~il~~SAT~--~~i~~l~~~~~--~~~~v~~~~r~~~l~~ 308 (677)
T 3rc3_A 237 TTPYEVAVIDEIQMIRDPA--RGWAWTRA--LLGLCAEEVHLCGEPAAI--DLVMELMYTTG--EEVEVRDYKRLTPISV 308 (677)
T ss_dssp SSCEEEEEECSGGGGGCTT--THHHHHHH--HHHCCEEEEEEEECGGGH--HHHHHHHHHHT--CCEEEEECCCSSCEEE
T ss_pred cccCCEEEEecceecCCcc--chHHHHHH--HHccCccceEEEeccchH--HHHHHHHHhcC--CceEEEEeeecchHHH
Confidence 3567999999999998755 55555443 33332 367889999993 33334444432 2222222111111111
Q ss_pred EEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc--CCCeEE
Q 016133 122 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQVV 199 (394)
Q Consensus 122 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~iL 199 (394)
.... + ..+..... ..||||+|++.++.+++.|.+.++.+..+||+|++++|.++++.|++ |+.+||
T Consensus 309 --~~~~-----l----~~l~~~~~-g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VL 376 (677)
T 3rc3_A 309 --LDHA-----L----ESLDNLRP-GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376 (677)
T ss_dssp --CSSC-----C----CSGGGCCT-TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEE
T ss_pred --HHHH-----H----HHHHhcCC-CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEE
Confidence 1100 0 01122222 45899999999999999999999999999999999999999999999 889999
Q ss_pred EeccccccccCCCCccEEEEecC--------------CCCHHHHHHHHhhcccCCCC---ceEEEEEecccHHHHHHHHH
Q 016133 200 VATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRAGRDQLP---SKSLLYYGMDDRRRMEFILS 262 (394)
Q Consensus 200 VaT~~~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Qr~GRagR~g~~---g~~i~l~~~~d~~~~~~i~~ 262 (394)
|||+++++|||+ +|++||++++ |.|.++|+||+|||||.|.. |.|+.+ .+.+...++.++.
T Consensus 377 VATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 377 VATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILK 454 (677)
T ss_dssp EECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHH
T ss_pred EeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHh
Confidence 999999999999 9999999999 77999999999999999964 555554 4556666776666
Q ss_pred hccc
Q 016133 263 KNQS 266 (394)
Q Consensus 263 ~~~~ 266 (394)
....
T Consensus 455 ~~~~ 458 (677)
T 3rc3_A 455 RPVD 458 (677)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 5443
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=6.7e-25 Score=248.38 Aligned_cols=218 Identities=19% Similarity=0.218 Sum_probs=154.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHH-HHH-HHHH----HHhCCCCCEEEEeecCChhHHHHHHHHhCCCCC--EEEecCC
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPS-YRK-LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSF 114 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~-~~~-l~~l----~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~ 114 (394)
...+++|||||+|.+.+ -|.. +.. +..+ ....+++|+|+||||+++. .++.++|+...+ ..+..+.
T Consensus 205 l~~v~~vIiDEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~ 278 (1724)
T 4f92_B 205 TQLVRLIILDEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNS 278 (1724)
T ss_dssp HTTEEEEEETTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGG
T ss_pred hcCcCEEEEecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCC
Confidence 35699999999998854 2432 222 1222 2234589999999999864 467888875422 1222222
Q ss_pred CCC-CeEEEEEEc--CchhhHHHHHH----HHHH-hCCCccEEEEeCcHHHHHHHHHHHHhC------------------
Q 016133 115 NRP-NLFYEVRYK--DLLDDAYADLC----SVLK-ANGDTCAIVYCLERTTCDELSAYLSAG------------------ 168 (394)
Q Consensus 115 ~~~-nl~~~v~~~--~~~~~~~~~l~----~~l~-~~~~~~~IVF~~s~~~~~~l~~~L~~~------------------ 168 (394)
.|| .+...+... .........+. ..+. ...++++||||+|++.|+.+|..|.+.
T Consensus 279 ~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 358 (1724)
T 4f92_B 279 FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAST 358 (1724)
T ss_dssp GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCS
T ss_pred CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHH
Confidence 233 333222111 11112222222 2222 235668999999999999999888641
Q ss_pred -------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEE----ec----
Q 016133 169 -------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---- 221 (394)
Q Consensus 169 -------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~---- 221 (394)
..+++++||||++++|..+++.|++|.++|||||+++++|||+|.+++||+ |+
T Consensus 359 ~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~ 438 (1724)
T 4f92_B 359 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKG 438 (1724)
T ss_dssp SHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTT
T ss_pred HHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCC
Confidence 124789999999999999999999999999999999999999999999995 44
Q ss_pred --CCCCHHHHHHHHhhcccCC--CCceEEEEEecccHHHHHHHHHhccc
Q 016133 222 --IPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKNQS 266 (394)
Q Consensus 222 --~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~i~~~~~~ 266 (394)
.|.++.+|.||+|||||.| ..|.++++..+++......++....+
T Consensus 439 ~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~p 487 (1724)
T 4f92_B 439 RWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 487 (1724)
T ss_dssp EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSC
T ss_pred CcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCc
Confidence 3569999999999999987 47999999999998888877765433
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.91 E-value=2.9e-25 Score=223.68 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccC
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 210 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 210 (394)
.+...+.+++....+.++||||++++.++.+++.|. +..+||+++..+|.+++++|++|+.+|||||+++++|+|
T Consensus 335 ~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gld 409 (472)
T 2fwr_A 335 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGID 409 (472)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSC
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcc
Confidence 456777888888778899999999999999999983 567999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHHhhcccCCCC-ceEEEE
Q 016133 211 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 248 (394)
Q Consensus 211 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~-g~~i~l 248 (394)
+|++++||+++.|.|+..|+|++||+||.|+. +.++++
T Consensus 410 lp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 410 VPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred cccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999965 454443
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=8e-24 Score=220.39 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc
Q 016133 129 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 129 ~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
...++..|...+.. ..++++||||+|++.++.++..|.+.|+++..+||++...++..+.++|+.| .|+|||+++|
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 46788888887754 4567899999999999999999999999999999999888888888888888 6999999999
Q ss_pred cccCCCCc-------------------------------------cEEEEecCCCCHHHHHHHHhhcccCCCCceEEEEE
Q 016133 207 MGIDRKDV-------------------------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 249 (394)
Q Consensus 207 ~GiD~p~v-------------------------------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 249 (394)
||+|++.. .+||+++.|.|...|.||+||+||.|.+|.++.|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999973 59999999999999999999999999999999999
Q ss_pred ecccH
Q 016133 250 GMDDR 254 (394)
Q Consensus 250 ~~~d~ 254 (394)
+..|.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 98773
No 64
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=4.8e-23 Score=214.94 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc
Q 016133 129 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 129 ~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
...++..|...+.. ..++++||||+|++.++.++..|.+.|+++..+||++...++..+.++|+.| .|+|||+++|
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 35677777776643 3567899999999999999999999999999999999888887787888877 6999999999
Q ss_pred cccCCCCc----------------------------------------------------cEEEEecCCCCHHHHHHHHh
Q 016133 207 MGIDRKDV----------------------------------------------------RLVCHFNIPKSMEAFYQESG 234 (394)
Q Consensus 207 ~GiD~p~v----------------------------------------------------~~VI~~~~p~s~~~y~Qr~G 234 (394)
||+|++.+ .+||+++.|.|...|.|++|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999975 59999999999999999999
Q ss_pred hcccCCCCceEEEEEecccH
Q 016133 235 RAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 235 RagR~g~~g~~i~l~~~~d~ 254 (394)
|+||.|.+|.++.|++.+|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999998875
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=4.6e-23 Score=209.03 Aligned_cols=119 Identities=12% Similarity=0.142 Sum_probs=99.1
Q ss_pred HHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCe-EEEeccccccc
Q 016133 134 ADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMG 208 (394)
Q Consensus 134 ~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-iLVaT~~~~~G 208 (394)
..+.+++.. ..+.++||||+++..++.++..|... |+.+..+||+++..+|.+++++|++| ..+ +|++|+++++|
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~G 407 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 407 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CC
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCC
Confidence 334444443 25679999999999999999999885 99999999999999999999999998 555 89999999999
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEE--EEecc
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 252 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--l~~~~ 252 (394)
+|+|++++||++|+|.++..|.|++||++|.|+...+.+ ++..+
T Consensus 408 lnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 408 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999998776644 44444
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=1.1e-21 Score=200.79 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=135.7
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEE--EEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 157 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v--~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 157 (394)
.+.+||+|+..+. ..+.+..++. ++..+.++|...... ........++..+...+.. ..++++||||+|++.
T Consensus 411 kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 5889999998755 4556666543 666677777654433 1223446777888777754 246789999999999
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC--------CccEEEEecCCCCHHHH
Q 016133 158 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAF 229 (394)
Q Consensus 158 ~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p--------~v~~VI~~~~p~s~~~y 229 (394)
++.++..|.+.|+++..+||+....++..+..+++.| .|+|||++++||+|++ ++.+||++++|.|...|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 9999999999999999999997666666666666655 6999999999999998 56699999999999999
Q ss_pred HHHHhhcccCCCCceEEEEEecccH
Q 016133 230 YQESGRAGRDQLPSKSLLYYGMDDR 254 (394)
Q Consensus 230 ~Qr~GRagR~g~~g~~i~l~~~~d~ 254 (394)
.||+||+||.|.+|.+++|++.+|.
T Consensus 565 ~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 565 NQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHhhCccccCCCCeeEEEEechhHH
Confidence 9999999999999999999999883
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=5.9e-21 Score=199.36 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=100.4
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe---EEEeccccccccCCCCccEEEE
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCH 219 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---iLVaT~~~~~GiD~p~v~~VI~ 219 (394)
.++.++||||+++..++.+...|...|+.+..+||+++..+|.+++++|++|... +|++|.++++|+|++++++||+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 3567999999999999999999999999999999999999999999999998764 8999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhhcccCCCCceEEE--EEecc
Q 016133 220 FNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 252 (394)
Q Consensus 220 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~--l~~~~ 252 (394)
||+|+++..|.|++||++|.|+...+.+ ++..+
T Consensus 494 ~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 494 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999999999999999998766544 44444
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.7e-20 Score=198.89 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=104.5
Q ss_pred HHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC---eEEEecccccc
Q 016133 133 YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGM 207 (394)
Q Consensus 133 ~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~---~iLVaT~~~~~ 207 (394)
+..|..++.. ..+.++||||..+..++.+...|...|+++..+||+++..+|.+++++|+++.. .+|++|.+++.
T Consensus 558 ~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 558 MVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGL 637 (800)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTT
T ss_pred HHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccC
Confidence 3445555543 246699999999999999999999999999999999999999999999998655 49999999999
Q ss_pred ccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceEEE--EEecc
Q 016133 208 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 252 (394)
Q Consensus 208 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--l~~~~ 252 (394)
|||++.+++||+||+|.|+..+.|++||++|.|+...+.+ |+..+
T Consensus 638 GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 638 GINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 9999999999999999999999999999999998765544 44444
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=3.7e-19 Score=166.29 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHhC--CCccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCe-EEEeccc
Q 016133 130 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 204 (394)
Q Consensus 130 ~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-iLVaT~~ 204 (394)
..|+..|.+++... .+.++||||+++..++.+...|.+. |+.+..+||+++..+|..++++|++| ..+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777777777654 5679999999999999999999885 99999999999999999999999998 677 7899999
Q ss_pred cccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCCceE--EEEEecc
Q 016133 205 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS--LLYYGMD 252 (394)
Q Consensus 205 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~l~~~~ 252 (394)
+++|+|++.+++||+||+|+++..|.|++||++|.|+.+.+ +.++..+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999987765 4445544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.73 E-value=3e-17 Score=177.94 Aligned_cols=105 Identities=8% Similarity=0.045 Sum_probs=86.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCC------------Cce-EEecCC----------C----------CH----------
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND---------- 181 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~---------- 181 (394)
+.++||||+|+..|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999997754 455 455542 2 22
Q ss_pred -------------------HHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecCCCCHHHHHHHHhhcccCCCC
Q 016133 182 -------------------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 242 (394)
Q Consensus 182 -------------------~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 242 (394)
.+|..++++|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEEEe
Q 016133 243 ----SKSLLYYG 250 (394)
Q Consensus 243 ----g~~i~l~~ 250 (394)
|.++.|.+
T Consensus 696 ~K~~G~IVdf~~ 707 (1038)
T 2w00_A 696 TKTFGNIVTFRD 707 (1038)
T ss_dssp TCCSEEEEESSC
T ss_pred CCCcEEEEEccc
Confidence 55555544
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.95 E-value=9.7e-08 Score=100.21 Aligned_cols=165 Identities=24% Similarity=0.268 Sum_probs=120.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEE---EEEcCchhhHHHHHHHHHHh--CCCccEEEEeCcHH
Q 016133 82 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 156 (394)
Q Consensus 82 ~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~ 156 (394)
.+.+||+|+..+. ..+.+..++. ++..+.++|.+... ..+ .....++..+..-+.. ..++|+||+|.|++
T Consensus 380 kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy-~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVY-RTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEE-cCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 5889999997664 4566666665 56678888876443 223 3345666665554432 35779999999999
Q ss_pred HHHHHHHHHH----------------------------------------------------------------------
Q 016133 157 TCDELSAYLS---------------------------------------------------------------------- 166 (394)
Q Consensus 157 ~~~~l~~~L~---------------------------------------------------------------------- 166 (394)
..+.++..|+
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999999
Q ss_pred ------hCCCceEEecCCCCHHHHHHHHHHHhcCC-CeEEEeccccccccCCCCc-------------------c-----
Q 016133 167 ------AGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKDV-------------------R----- 215 (394)
Q Consensus 167 ------~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~v-------------------~----- 215 (394)
+.|++...+++.....+- +++. ..|. -.|-|||+++|||.|+.-- .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~ 611 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVEL 611 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccc
Confidence 456666667766443332 2222 2333 4599999999999997432 1
Q ss_pred --------------------------------------------------EEEEecCCCCHHHHHHHHhhcccCCCCceE
Q 016133 216 --------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRDQLPSKS 245 (394)
Q Consensus 216 --------------------------------------------------~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 245 (394)
+||--..+.|..-=-|-.||+||.|.||.+
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsS 691 (997)
T 2ipc_A 612 FIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGS 691 (997)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEE
T ss_pred ccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCe
Confidence 788888899999999999999999999999
Q ss_pred EEEEecccH
Q 016133 246 LLYYGMDDR 254 (394)
Q Consensus 246 i~l~~~~d~ 254 (394)
..|++-+|-
T Consensus 692 rF~LSLeDd 700 (997)
T 2ipc_A 692 RFYVSFDDD 700 (997)
T ss_dssp EEEEESSSH
T ss_pred EEEEECChH
Confidence 999988773
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.79 E-value=7.6e-09 Score=94.24 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=59.6
Q ss_pred ccEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 18 LRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
.+|+++||+ ++..+ ........+++|||||||++.+|| |++.+..+ +....++.|+++||||+++.+.
T Consensus 153 ~~I~v~Tp~------~l~~~l~~~~~~~~~~~~lViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 153 VEICIATPG------RLIDFLECGKTNLRRTTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVR 222 (242)
T ss_dssp CSEEEECHH------HHHHHHHHTSCCCTTCCEEEETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHH
T ss_pred CCEEEECHH------HHHHHHHcCCCCcccccEEEEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHH
Confidence 356655554 44333 233456789999999999999998 88887776 3333458999999999999988
Q ss_pred HHHHHHhCCCCCEEEecC
Q 016133 96 KDVMESLCLQNPLVLKSS 113 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~~~ 113 (394)
..+...+ .+|..+..+
T Consensus 223 ~~~~~~l--~~~~~i~~~ 238 (242)
T 3fe2_A 223 QLAEDFL--KDYIHINIG 238 (242)
T ss_dssp HHHHHHC--SSCEEEEEC
T ss_pred HHHHHHC--CCCEEEEec
Confidence 7655554 567666543
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.77 E-value=8.2e-09 Score=95.37 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=53.2
Q ss_pred ccEEEeCCceecChHHHHHH-Hh--hccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKL-KK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~~--~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~ 93 (394)
.+|+++||+. +..+ .+ .....++++|||||||++++|| |++.+..+ ...+ ++.|+++||||+++.
T Consensus 177 ~~Iiv~Tp~~------l~~~~~~~~~~~~~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 177 INIIVATPGR------LLDHMQNTPGFMYKNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRK 245 (262)
T ss_dssp CSEEEECHHH------HHHHHHHCTTCCCTTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHH
T ss_pred CCEEEEcHHH------HHHHHHccCCcccccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHH
Confidence 4677666654 3332 22 2346779999999999999998 88877765 3344 478999999999999
Q ss_pred HHHHHHHHh
Q 016133 94 VQKDVMESL 102 (394)
Q Consensus 94 ~~~~i~~~l 102 (394)
+.......+
T Consensus 246 v~~~~~~~l 254 (262)
T 3ly5_A 246 VEDLARISL 254 (262)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 987554444
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=91.95 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=54.8
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
++||+++..+ ........+++|||||||++.+|| |++.+..+ +....++.|+++||||+++.+...+.. .+.
T Consensus 148 v~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~ 221 (228)
T 3iuy_A 148 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALS--YLK 221 (228)
T ss_dssp EECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHT--TCS
T ss_pred EECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCC
Confidence 3444444443 223346779999999999999988 88887776 344445899999999999998875444 345
Q ss_pred CCEEE
Q 016133 106 NPLVL 110 (394)
Q Consensus 106 ~~~~~ 110 (394)
+|..+
T Consensus 222 ~p~~i 226 (228)
T 3iuy_A 222 DPMIV 226 (228)
T ss_dssp SCEEE
T ss_pred CCEEE
Confidence 66544
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.73 E-value=1.5e-08 Score=91.98 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=54.3
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhCCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 105 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~~~ 105 (394)
++||+.+..+. .......+++||+||||++.++| |...+..+ +....++.++++||||+++.+.+.+...+ .
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~ 227 (237)
T 3bor_A 154 VGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG--FKDQIYEI--FQKLNTSIQVVLLSATMPTDVLEVTKKFM--R 227 (237)
T ss_dssp EECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEECSSCCHHHHHHHHHHC--S
T ss_pred EECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHHHHHHHC--C
Confidence 45565544432 23445679999999999999888 77665554 22333478999999999999887655554 4
Q ss_pred CCEEEe
Q 016133 106 NPLVLK 111 (394)
Q Consensus 106 ~~~~~~ 111 (394)
+|..+.
T Consensus 228 ~p~~i~ 233 (237)
T 3bor_A 228 DPIRIL 233 (237)
T ss_dssp SCEEEC
T ss_pred CCEEEE
Confidence 676554
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.72 E-value=1.2e-08 Score=91.24 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=55.2
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
++||+.+..+. .......+++|||||||++.+|| |...+.. +...++ +.|+++||||+++.+.+.+... +
T Consensus 131 v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~ 203 (219)
T 1q0u_A 131 IGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG--FITDVDQ---IAARMPKDLQMLVFSATIPEKLKPFLKKY--M 203 (219)
T ss_dssp EECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT--CHHHHHH---HHHTSCTTCEEEEEESCCCGGGHHHHHHH--C
T ss_pred EeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC--hHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHH--c
Confidence 44555444432 22345668999999999999988 6655444 455554 7899999999999887755443 5
Q ss_pred CCCEEEecCCCCCC
Q 016133 105 QNPLVLKSSFNRPN 118 (394)
Q Consensus 105 ~~~~~~~~~~~~~n 118 (394)
.+|..+.....+++
T Consensus 204 ~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 204 ENPTFVHVLEHHHH 217 (219)
T ss_dssp SSCEEEECC-----
T ss_pred CCCeEEEeeccccc
Confidence 67887777666554
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.64 E-value=4.6e-08 Score=88.48 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=49.1
Q ss_pred ccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCCCCCEEEec
Q 016133 41 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 112 (394)
Q Consensus 41 ~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 112 (394)
.....+++||+||||++.+|| |.+.+.. +...++ +.|+++||||+++.+.. .....+.+|..+..
T Consensus 167 ~~~~~~~~lViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 167 FHATDLQMLVLDEADRILDMG--FADTMNA---VIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVWV 232 (236)
T ss_dssp CCCTTCCEEEETTHHHHHHTT--THHHHHH---HHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEEC
T ss_pred cccccccEEEEeChHHHhcCC--cHHHHHH---HHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEEe
Confidence 345679999999999999988 6766555 444454 78899999999998876 34445677876654
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.62 E-value=4.1e-08 Score=89.36 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=55.4
Q ss_pred ecChHHHHHHH-h---hccCCCccEEEEecCCccccCC-CCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHH
Q 016133 28 TATPGFMSKLK-K---IHSRGLLNLVAIDEAHCISSWG-HDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 28 v~tp~~~~~l~-~---~~~~~~l~~iVvDEaH~l~~~g-~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
++||+++..+. + ......+++|||||||++.+|| ..|+..+..+ +.... ++.|+++||||+++.+...+...
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHh
Confidence 34555544442 2 2346679999999999999986 3577776665 33322 47899999999999888754443
Q ss_pred hCCCCCEEEecC
Q 016133 102 LCLQNPLVLKSS 113 (394)
Q Consensus 102 l~~~~~~~~~~~ 113 (394)
+.+|..+..+
T Consensus 232 --l~~p~~i~~~ 241 (245)
T 3dkp_A 232 --LDNVISVSIG 241 (245)
T ss_dssp --SSSCEEEEEC
T ss_pred --CCCCEEEEeC
Confidence 4577766554
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.60 E-value=1.5e-07 Score=95.90 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE--eccccccccCC
Q 016133 134 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV--ATVAFGMGIDR 211 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV--aT~~~~~GiD~ 211 (394)
..|..++.. .++.+|||++|....+.+++.|.. .+ ...++.. ..|.++++.|+++. .||+ +|..+.+|||+
T Consensus 374 ~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 344445444 455799999999999999998865 23 4556554 46888999999865 5666 88999999999
Q ss_pred CC----ccEEEEecCCCC----H--------------------------HHHHHHHhhcccCCCCceEEEEEe
Q 016133 212 KD----VRLVCHFNIPKS----M--------------------------EAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 212 p~----v~~VI~~~~p~s----~--------------------------~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
|+ +++||.+++|.. + ..+.|.+||+-|....--++++++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 98 899999999842 1 234589999999754433444444
No 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.60 E-value=6.3e-08 Score=88.68 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=56.8
Q ss_pred ccEEEeCCceecChHHHHHH-H--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKL-K--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~ 93 (394)
.+|+++||+ ++..+ . .......+++||+||||++.+|+ |++.+..+ ...+ ++.++++||||+++.
T Consensus 162 ~~I~v~Tp~------~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 162 PHIIIATPG------RLIDHLENTKGFNLRALKYLVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKK 230 (249)
T ss_dssp CSEEEECHH------HHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHH
T ss_pred CCEEEECHH------HHHHHHHcCCCcCccccCEEEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHH
Confidence 356655555 44333 2 22346779999999999999987 88877665 3344 478999999999999
Q ss_pred HHHHHHHHhCCCCCEEEec
Q 016133 94 VQKDVMESLCLQNPLVLKS 112 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~ 112 (394)
+.+.+... +.+|..+..
T Consensus 231 v~~~~~~~--l~~p~~i~v 247 (249)
T 3ber_A 231 VQKLQRAA--LKNPVKCAV 247 (249)
T ss_dssp HHHHHHHH--CSSCEEEEC
T ss_pred HHHHHHHH--CCCCEEEEe
Confidence 87744443 467766543
No 81
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.59 E-value=7.2e-08 Score=85.10 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=54.5
Q ss_pred cEEEeCCceecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHH
Q 016133 19 RLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 95 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~ 95 (394)
+++++||+ .+..+ ........+++||+||||++.+++ |...+..+ .... ++.+++++|||+++.+.
T Consensus 122 ~i~v~T~~------~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~ 190 (207)
T 2gxq_A 122 DAVVATPG------RALDYLRQGVLDLSRVEVAVLDEADEMLSMG--FEEEVEAL---LSATPPSRQTLLFSATLPSWAK 190 (207)
T ss_dssp SEEEECHH------HHHHHHHHTSSCCTTCSEEEEESHHHHHHTT--CHHHHHHH---HHTSCTTSEEEEECSSCCHHHH
T ss_pred CEEEECHH------HHHHHHHcCCcchhhceEEEEEChhHhhccc--hHHHHHHH---HHhCCccCeEEEEEEecCHHHH
Confidence 55655554 43333 223446779999999999999887 77766654 3344 47899999999999887
Q ss_pred HHHHHHhCCCCCEEEe
Q 016133 96 KDVMESLCLQNPLVLK 111 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~~ 111 (394)
..+... +.+|..+.
T Consensus 191 ~~~~~~--~~~p~~i~ 204 (207)
T 2gxq_A 191 RLAERY--MKNPVLIN 204 (207)
T ss_dssp HHHHHH--CSSCEEEE
T ss_pred HHHHHH--cCCCeEEE
Confidence 644443 45676554
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.59 E-value=5.1e-08 Score=89.20 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=57.3
Q ss_pred ccEEEeCCceecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChh
Q 016133 18 LRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPK 93 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~--~~~~l~lSAT~~~~ 93 (394)
.+|+++||+ ++..+. .......+++||+||||++.+|| |++.+..+.......+ +.|+++||||+++.
T Consensus 151 ~~Ivv~Tp~------~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 151 CHLLVATPG------RLVDFIEKNKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp CSEEEECHH------HHHHHHHTTSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHH
T ss_pred CCEEEECHH------HHHHHHHcCCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHH
Confidence 356655554 444332 22346778999999999999988 8888777633212222 67899999999999
Q ss_pred HHHHHHHHhCCCCCEEEecC
Q 016133 94 VQKDVMESLCLQNPLVLKSS 113 (394)
Q Consensus 94 ~~~~i~~~l~~~~~~~~~~~ 113 (394)
+...+...+ .+|..+..+
T Consensus 223 ~~~~~~~~l--~~~~~i~~~ 240 (253)
T 1wrb_A 223 IQKLAADFL--YNYIFMTVG 240 (253)
T ss_dssp HHHHHHHHC--SSCEEEEEC
T ss_pred HHHHHHHHc--CCCEEEEEC
Confidence 877555544 467665543
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.57 E-value=4.3e-08 Score=92.44 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=56.8
Q ss_pred eecChHHHHHHH-h--hccCCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHH
Q 016133 27 LTATPGFMSKLK-K--IHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 101 (394)
Q Consensus 27 ~v~tp~~~~~l~-~--~~~~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~ 101 (394)
+|+||+++..+. + ......+++|||||||++++ +| |...+..+ ...+ ++.|+++||||+++.+......
T Consensus 214 lV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~v~~~a~~- 287 (300)
T 3fmo_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQK- 287 (300)
T ss_dssp EEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCHHHHHHHHH-
T ss_pred EEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCHHHHHHHHH-
Confidence 467888766654 2 34456799999999999997 55 67666554 3343 4799999999999999875444
Q ss_pred hCCCCCEEEec
Q 016133 102 LCLQNPLVLKS 112 (394)
Q Consensus 102 l~~~~~~~~~~ 112 (394)
.+.+|.++..
T Consensus 288 -~l~~p~~i~~ 297 (300)
T 3fmo_B 288 -VVPDPNVIKL 297 (300)
T ss_dssp -HSSSCEEEEE
T ss_pred -HCCCCeEEEe
Confidence 3567776653
No 84
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.56 E-value=1.1e-07 Score=83.93 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=55.0
Q ss_pred ccEEEeCCceecChHHHHHH-H-hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKL-K-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l-~-~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+. +..+ . .......+++||+||||++.+++ |++.+..+ ...++ +.|+++||||+++.+
T Consensus 123 ~~i~v~T~~~------l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~~ 191 (206)
T 1vec_A 123 VHVVIATPGR------ILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDI---ILTLPKNRQILLYSATFPLSV 191 (206)
T ss_dssp CSEEEECHHH------HHHHHHTTCSCCTTCCEEEEETHHHHTSTT--THHHHHHH---HHHSCTTCEEEEEESCCCHHH
T ss_pred CCEEEeCHHH------HHHHHHcCCcCcccCCEEEEEChHHhHhhC--cHHHHHHH---HHhCCccceEEEEEeeCCHHH
Confidence 4566555554 3332 2 23345679999999999998865 77766554 44454 899999999999998
Q ss_pred HHHHHHHhCCCCCEEE
Q 016133 95 QKDVMESLCLQNPLVL 110 (394)
Q Consensus 95 ~~~i~~~l~~~~~~~~ 110 (394)
...+...+ .+|..+
T Consensus 192 ~~~~~~~l--~~p~~i 205 (206)
T 1vec_A 192 QKFMNSHL--EKPYEI 205 (206)
T ss_dssp HHHHHHHC--SSCEEE
T ss_pred HHHHHHHc--CCCeEe
Confidence 87666554 455543
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.56 E-value=7.6e-08 Score=86.84 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=53.0
Q ss_pred ecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
++||+.+..+. .......+++|||||||++.+|| .|++.+..+ ...++ +.|+++||||+++.+.+.+.. .+
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~ 220 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG-SFQEQINWI---YSSLPASKQMLAVSATYPEFLANALTK--YM 220 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTT-SSHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTT--TC
T ss_pred EECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCc-chHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHH--Hc
Confidence 44555444432 22334568999999999999987 377776654 44455 788999999999887664433 34
Q ss_pred CCCEEEe
Q 016133 105 QNPLVLK 111 (394)
Q Consensus 105 ~~~~~~~ 111 (394)
.+|..+.
T Consensus 221 ~~p~~i~ 227 (230)
T 2oxc_A 221 RDPTFVR 227 (230)
T ss_dssp SSCEEEC
T ss_pred CCCeEEE
Confidence 5676554
No 86
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.55 E-value=9.3e-08 Score=85.61 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=53.4
Q ss_pred ecChHHHHHH--HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhCC
Q 016133 28 TATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL 104 (394)
Q Consensus 28 v~tp~~~~~l--~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~~~~i~~~l~~ 104 (394)
++||+.+..+ ........+++||+||||++.+|+ |+..+..+ .... ++.++++||||+++.+...+... +
T Consensus 136 v~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~ 208 (224)
T 1qde_A 136 VGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKF--M 208 (224)
T ss_dssp EECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEEESSCCHHHHHHHHHH--C
T ss_pred EECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh--hHHHHHHH---HHhCCccCeEEEEEeecCHHHHHHHHHH--C
Confidence 4455544333 223445679999999999999987 77766655 3333 47899999999999988755554 4
Q ss_pred CCCEEEec
Q 016133 105 QNPLVLKS 112 (394)
Q Consensus 105 ~~~~~~~~ 112 (394)
.+|..+..
T Consensus 209 ~~p~~i~~ 216 (224)
T 1qde_A 209 RNPVRILV 216 (224)
T ss_dssp SSCEEEC-
T ss_pred CCCEEEEe
Confidence 56665543
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.54 E-value=1.2e-07 Score=84.73 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=52.1
Q ss_pred cEEEeCCceecChHHHHHHH--hhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHH
Q 016133 19 RLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQ 95 (394)
Q Consensus 19 ~il~~tPe~v~tp~~~~~l~--~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT~~~~~~ 95 (394)
+|+++||+ .+..+. .......+++||+||||++.++. +|+..+.. +....+ +.+++++|||+++.+.
T Consensus 136 ~i~v~T~~------~l~~~~~~~~~~~~~~~~lViDEah~~~~~~-~~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~ 205 (220)
T 1t6n_A 136 HIVVGTPG------RILALARNKSLNLKHIKHFILDECDKMLEQL-DMRRDVQE---IFRMTPHEKQVMMFSATLSKEIR 205 (220)
T ss_dssp SEEEECHH------HHHHHHHTTSSCCTTCCEEEEESHHHHHSSH-HHHHHHHH---HHHTSCSSSEEEEEESCCCTTTH
T ss_pred CEEEeCHH------HHHHHHHhCCCCcccCCEEEEcCHHHHhccc-CcHHHHHH---HHHhCCCcCeEEEEEeecCHHHH
Confidence 56655554 443332 22345679999999999998741 26655544 444444 7899999999999887
Q ss_pred HHHHHHhCCCCCEEE
Q 016133 96 KDVMESLCLQNPLVL 110 (394)
Q Consensus 96 ~~i~~~l~~~~~~~~ 110 (394)
+.+. ..+.+|..+
T Consensus 206 ~~~~--~~~~~p~~i 218 (220)
T 1t6n_A 206 PVCR--KFMQDPMEI 218 (220)
T ss_dssp HHHH--TTCSSCEEE
T ss_pred HHHH--HHcCCCeEE
Confidence 6433 345667654
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.43 E-value=2.1e-06 Score=88.81 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=103.1
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCCEEEe--cCCCCCCeEEEEEEc-C-----chhh----HHHHHHHHHHhCCCcc
Q 016133 80 DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK-D-----LLDD----AYADLCSVLKANGDTC 147 (394)
Q Consensus 80 ~~~~l~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~nl~~~v~~~-~-----~~~~----~~~~l~~~l~~~~~~~ 147 (394)
...+|++|||+++ ...+.+.||+. ...+. .+++..|....+... + .... ..+.|..++...+ +.
T Consensus 375 ~~~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~ 450 (620)
T 4a15_A 375 ESKTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KN 450 (620)
T ss_dssp GSEEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SC
T ss_pred CCeEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CC
Confidence 4578999999998 45667888987 44433 334444543322211 0 0111 2233444444444 46
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc--ccccccCCCC--ccEEEEecCC
Q 016133 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIP 223 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiD~p~--v~~VI~~~~p 223 (394)
++||++|....+.+++.|.. +... ...+++..++..++++|+ ++-.||++|. .|+.|||+|+ .+.||..++|
T Consensus 451 ~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lP 526 (620)
T 4a15_A 451 TIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLP 526 (620)
T ss_dssp EEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCC
T ss_pred EEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCC
Confidence 99999999999999998862 2222 445566678999999999 8888999985 9999999987 6789999988
Q ss_pred CC-------------------H----------HHHHHHHhhcccCCCCceEEEEEec
Q 016133 224 KS-------------------M----------EAFYQESGRAGRDQLPSKSLLYYGM 251 (394)
Q Consensus 224 ~s-------------------~----------~~y~Qr~GRagR~g~~g~~i~l~~~ 251 (394)
.. . ....|-+||+=|....--+++++++
T Consensus 527 fp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 527 FPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 42 1 1125899999997655445555543
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.16 E-value=6.4e-05 Score=76.66 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=99.9
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCCEE-------EecCCCCCCeEEEEEEc-Cc---------hhhHHHHHHHHHHhC
Q 016133 81 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-DL---------LDDAYADLCSVLKAN 143 (394)
Q Consensus 81 ~~~l~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~nl~~~v~~~-~~---------~~~~~~~l~~~l~~~ 143 (394)
..+|++|||+++ ...+.+.+|+..+.. +..++ ..+....+... +. .....+.+.+++...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 688999999998 456678888874432 12233 34443332211 10 012223344444444
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEec--cccccccCCC-----CccE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 216 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT--~~~~~GiD~p-----~v~~ 216 (394)
++.++||++|....+.+++. .+.++..-..+++. .+.++.|+.+.-.||+|| ..+..|||+| ..+.
T Consensus 393 -~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 -KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp -SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred -CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 45799999999999999873 34444433334553 456777754445899998 6999999999 4789
Q ss_pred EEEecCCCC---------------------H---------HHHHHHHhhcccCCCCceEEEEEe
Q 016133 217 VCHFNIPKS---------------------M---------EAFYQESGRAGRDQLPSKSLLYYG 250 (394)
Q Consensus 217 VI~~~~p~s---------------------~---------~~y~Qr~GRagR~g~~g~~i~l~~ 250 (394)
||..++|.. . ....|-+||+=|....--++++++
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEee
Confidence 999988741 1 112378899988765544445544
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.08 E-value=8e-06 Score=73.78 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=46.6
Q ss_pred eecChHHHHHHHhhccCCCccEEEEecCCcc-ccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhC
Q 016133 27 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 103 (394)
Q Consensus 27 ~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l-~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~i~~~l~ 103 (394)
+++||+++..+... ...++++|||||||.+ .+.+ |.. ..+..+....++.++++||||++... +.++++
T Consensus 159 vv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~--~~~--~~l~~i~~~~~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 159 MFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTD--FLL--VVLRDVVQAYPEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp EEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHH--HHH--HHHHHHHHHCTTSEEEEEECSSCCHH---HHHHTT
T ss_pred EEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchH--HHH--HHHHHHHhhCCCCeEEEEecCCCHHH---HHHHcC
Confidence 35667766554322 4678999999999975 3322 221 24555677778999999999999876 345543
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.56 E-value=5.3e-05 Score=66.66 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=24.2
Q ss_pred cCCCccEEEEecCCccccCCCCCHHHHHHHHHHH--Hh---------CCCCCEEEEeec
Q 016133 42 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NY---------LPDVPILALTAT 89 (394)
Q Consensus 42 ~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~--~~---------~~~~~~l~lSAT 89 (394)
....+++|||||||++...+. +...+..+...+ .. .++.++++||||
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CGGGCSEEEETTC-------C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhcccEEEEECchhhccCCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 345689999999999975431 333222221111 11 167899999998
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.36 E-value=9.6e-05 Score=68.44 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=39.7
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhH
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 94 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lSAT~~~~~ 94 (394)
.+|+++||+.+.... ......+++||+||||++.. +.+. .+...+ +..++++||||++...
T Consensus 205 ~~I~v~T~~~l~~~~-------~~~~~~~~~vIiDEaH~~~~------~~~~---~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 205 APVVVGTWQTVVKQP-------KEWFSQFGMMMNDECHLATG------KSIS---SIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp CSEEEECHHHHTTSC-------GGGGGGEEEEEEETGGGCCH------HHHH---HHTTTCTTCCEEEEECSSCCTTS
T ss_pred CcEEEEchHHHHhhH-------HHHHhhCCEEEEECCccCCc------ccHH---HHHHHhhcCCeEEEEeCCCCCcc
Confidence 567766666443221 01234589999999999863 2333 344444 5789999999997654
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.26 E-value=0.00034 Score=63.19 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
..+++|||||||.+...+ |.. +...++..++++||||+....
T Consensus 191 ~~~~llIiDEaH~l~~~~------~~~---i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 191 NRFMLLIFDEVHHLPAES------YVQ---IAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp TTCSEEEEECSSCCCTTT------HHH---HHHTCCCSEEEEEEESCC---
T ss_pred ccCCEEEEECCccCCChH------HHH---HHHhccCCEEEEEecCCCCCC
Confidence 458999999999997644 333 445567788999999998654
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.08 E-value=0.009 Score=56.11 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHh--CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccc
Q 016133 131 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 208 (394)
Q Consensus 131 ~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 208 (394)
.|+..|.+++.. ..+.+++||++..+..+-+..+|...|++..-+.|.....+ .+ -.++...+.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 466666666643 34679999999999999999999999999999999855432 11 124555666668888878
Q ss_pred cC-----CCCccEEEEecCCCCHHH-HHHHHhhcccCC----CCceEEEEEecccHHHHHHHH
Q 016133 209 ID-----RKDVRLVCHFNIPKSMEA-FYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFIL 261 (394)
Q Consensus 209 iD-----~p~v~~VI~~~~p~s~~~-y~Qr~GRagR~g----~~g~~i~l~~~~d~~~~~~i~ 261 (394)
+| ....+.||.||.-.++.. .+|.+-|+.|.| ++-.++-++...-.+......
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 86 678899999999988876 589888888863 345567777766665544333
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.50 E-value=0.038 Score=58.38 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=64.9
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccCCCCccEEEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 219 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI~ 219 (394)
+.+++|.++|+.-+.++++.+.+. |+++..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 458999999999998888877653 789999999999999999999999999999999975 345578888988884
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.75 E-value=0.076 Score=51.30 Aligned_cols=77 Identities=8% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc----cccCCCCcc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 215 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~----~GiD~p~v~ 215 (394)
..+.++||.++|+.-+.++++.+.+ .++.+..+||+.+..++....+.+..|+.+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3456899999999999999999998 588999999999999999999999999999999996322 125566788
Q ss_pred EEEE
Q 016133 216 LVCH 219 (394)
Q Consensus 216 ~VI~ 219 (394)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8773
No 97
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.59 E-value=0.13 Score=56.41 Aligned_cols=76 Identities=8% Similarity=0.118 Sum_probs=64.6
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----ccccCCCCc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMGIDRKDV 214 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~~GiD~p~v 214 (394)
..+.++||.++|+.-+.++++.|.+ .++.+..+||+++..+|....+.+.+|..+|+|+|.-. .. ++..++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3456899999999999999999998 47789999999999899999999999999999999632 22 556788
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88884
No 98
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.05 E-value=0.57 Score=51.65 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-ccccccCCCCccEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-AFGMGIDRKDVRLVC 218 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 218 (394)
.+.+++|.++|+.-+.++++.+.+. ++.+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999999888753 67889999999999999999999999999999995 455568888888877
Q ss_pred E
Q 016133 219 H 219 (394)
Q Consensus 219 ~ 219 (394)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.74 E-value=1 Score=40.12 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=51.5
Q ss_pred HhCCCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----c--ccc
Q 016133 141 KANGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G--MGI 209 (394)
Q Consensus 141 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~--~Gi 209 (394)
....+.++||.++|+.-+.++++.+++. ++.+..++|+.+.......+ .+..+|+|+|.-. . .++
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTC
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCc
Confidence 3334557999999999999999888764 78899999998876543322 3567899999521 1 234
Q ss_pred CCCCccEEE
Q 016133 210 DRKDVRLVC 218 (394)
Q Consensus 210 D~p~v~~VI 218 (394)
++.++++||
T Consensus 183 ~l~~~~~lV 191 (249)
T 3ber_A 183 NLRALKYLV 191 (249)
T ss_dssp CCTTCCEEE
T ss_pred CccccCEEE
Confidence 555565555
No 100
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.38 E-value=0.48 Score=47.48 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=61.6
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc------cccccCCCCccEEE
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDVRLVC 218 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p~v~~VI 218 (394)
.+.+||.++++.-+.+....|.+.|+.+..+||+.+..++..+...+..|..+|+++|.- +...++..++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 357999999999999999999999999999999999999999999999999999999952 11223345566655
No 101
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.01 E-value=2.6 Score=36.30 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=52.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
+.++||.++++.-+.++++.+++. ++.+..++|+.+..... +.+.++..+|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999999888764 68899999999876544 34556778999999521 12345556
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+++||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66655
No 102
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.77 E-value=0.47 Score=48.37 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=54.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH--hcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~iLVaT~ 203 (394)
++.+||.++++.-+++.+..|.+.|+.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45899999999999999999999999999999999999999888888 478899999997
No 103
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.30 E-value=3.2 Score=36.49 Aligned_cols=71 Identities=8% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cc-cccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiD~p~ 213 (394)
.+.++||.++|++-+.++++.+.+ .++.+..++|+.+.......+. + ..+|+|+|.- +. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 355799999999999998877765 3889999999998876554433 2 4789999952 22 1235555
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 66555
No 104
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.48 E-value=0.8 Score=40.15 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++|++-+.++++.+.+. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 4568999999999999999988764 67889999999876654432 3578999996
No 105
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.84 E-value=2.8 Score=36.57 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++|+.-+.++++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3557999999999999999988864 47888999987655433322 4678999995
No 106
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=87.80 E-value=0.97 Score=39.83 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++|+.-+.++++.+++. ++.+..++|+.+... ..+.+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECH
Confidence 4558999999999999999988764 567788888765433 23445567789999994
No 107
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.70 E-value=1.7 Score=36.99 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++++.-+.++++.+.+. +..+..++|+.+..+.... ..+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 3457999999999999999888753 5778899999876543322 245678999996
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.51 E-value=4.9 Score=33.94 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 3557999999999999999999876 467888999887654433322 2578999995
No 109
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.75 E-value=5.9 Score=37.08 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=55.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
+.++||.|+++.-++++++.+.+. ++.+..++|+.+...... .+..+..+|+|+|.-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999999888764 788999999998765543 4456778999999522 23356778
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888773
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.63 E-value=1.7 Score=37.80 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC---CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc------cccccCCCCc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA------FGMGIDRKDV 214 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p~v 214 (394)
.+.++||.++|++-+.++++.+.+. ++.+..++|+.+...+.. .+. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999999874 778888999876554332 223 34789999952 1223445555
Q ss_pred cEEE
Q 016133 215 RLVC 218 (394)
Q Consensus 215 ~~VI 218 (394)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5554
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.78 E-value=4.3 Score=36.28 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cc--ccccCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AF--GMGIDRK 212 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~--~~GiD~p 212 (394)
.+.++||.++|+.-+.++++.+++. +..+..++|+........ .+..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3557999999999999999988763 667788999887665433 23344 88999994 11 1235666
Q ss_pred CccEEE
Q 016133 213 DVRLVC 218 (394)
Q Consensus 213 ~v~~VI 218 (394)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 666665
No 112
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=84.15 E-value=1.2 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+..+.... + ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECH
Confidence 4458999999999999999888753 6788899998765543322 2 2378999985
No 113
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.59 E-value=3.5 Score=36.35 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=41.6
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.++||.++|++-+.++++.+.+. ++.+..++|+.+....... + ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECH
Confidence 457999999999999998888753 5678889998876543322 2 34678999996
No 114
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.92 E-value=5.4 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=53.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-CC---ceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
.+.++||.|+++.-+.++++.+.+. +. .+..+||+....++..... ..+|+|+|.-. ...+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4568999999999999999999876 55 8999999998887654432 46799999522 12356677
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 787773
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.65 E-value=14 Score=34.80 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=51.1
Q ss_pred ccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----ccc-ccCCCCcc
Q 016133 146 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDVR 215 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~-GiD~p~v~ 215 (394)
.++||.++|+.-+.++++.+.+ .++.+..++|+.+..+... .+ ....+|+|+|.- +.. .+++.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DL-ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HH-TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hh-hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999988875 3678899999988765433 22 345789999962 222 35667788
Q ss_pred EEEE
Q 016133 216 LVCH 219 (394)
Q Consensus 216 ~VI~ 219 (394)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 116
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=78.17 E-value=1.7 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999863
No 117
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.68 E-value=1.7 Score=32.61 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999999998999999999999999888999853
No 118
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.40 E-value=5.8 Score=37.09 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=51.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
.+.++||.++++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 455899999999999999888865 3678999999998766554433 46799999421 22345667
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777773
No 119
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.37 E-value=7.4 Score=37.51 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=52.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 214 (394)
+.++||.++|++-+.++++.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+..+ +++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 457999999999999999988764 56788899999876543322 34678999995 22333 567788
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88773
No 120
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.15 E-value=11 Score=34.59 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=51.6
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRK 212 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p 212 (394)
.++.++||.++++.-+.++++.+.+. ++.+..++|+.......... . ..+|+|+|.-. ...+++.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~ 146 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLK 146 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTT
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCcccc
Confidence 34568999999999999999888763 67788899998766543332 2 56899999531 1224567
Q ss_pred CccEEEE
Q 016133 213 DVRLVCH 219 (394)
Q Consensus 213 ~v~~VI~ 219 (394)
++++||.
T Consensus 147 ~~~~iIi 153 (367)
T 1hv8_A 147 NVKYFIL 153 (367)
T ss_dssp SCCEEEE
T ss_pred cCCEEEE
Confidence 7787773
No 121
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.03 E-value=3.3 Score=40.83 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=50.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-c-CCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 213 (394)
+.++||.++|+.-+.+++..+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 668999999999988888887764 899999999986654422221 24789999952 2222 3 5667
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787773
No 122
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.69 E-value=4.5 Score=39.94 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=48.3
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----ccc-c-CCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~~G-i-D~p~ 213 (394)
+.++||.++++.-+.+++..+.+. ++.+..+||+.+...+...+. ...+|+|+|.-. ..| + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 668999999999999998888765 899999999987655432221 236899999532 222 3 5677
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888774
No 123
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.22 E-value=1.7 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
+..+++|||.+-..+...+..|...|+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456899999998889999999999999988899885
No 124
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.14 E-value=5.8 Score=41.71 Aligned_cols=70 Identities=10% Similarity=0.105 Sum_probs=47.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-c-CCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 213 (394)
++++||.|+++.-+.+++..+++. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988888765 899999999987665432221 35789999953 2222 3 5667
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 125
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.00 E-value=7.7 Score=36.46 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=52.2
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----ccc-ccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~-GiD~p~ 213 (394)
.+.++||.++++.-+.++++.+.+. ++.+..++|+......... ..+..+|+|+|.- +.. ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3457999999999999998888764 6788899999876543221 2467889999952 223 356777
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 126
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.65 E-value=2 Score=32.75 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
+..+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999998889999999999999988888875
No 127
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.08 E-value=3.7 Score=44.81 Aligned_cols=74 Identities=8% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CC----ceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-cccccC-CCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD-~p~ 213 (394)
.+.++||.++|+.-+.++++.+++. ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3558999999999999999888753 56 78999999999888777777776 899999962 111111 457
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 128
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=73.81 E-value=2.4 Score=31.34 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.1
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988899999999999999888888864
No 129
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.78 E-value=2.6 Score=38.74 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=46.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------c-cccCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDRK 212 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~-~GiD~p 212 (394)
+.++||.++|++-+.+++..+... ++.+..++|+....... ....+|+|+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999998888763 46677777776432211 3456899999632 1 245666
Q ss_pred CccEEEE
Q 016133 213 DVRLVCH 219 (394)
Q Consensus 213 ~v~~VI~ 219 (394)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777663
No 130
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=72.92 E-value=1.4 Score=38.90 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----ccc---ccCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDR 211 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~---GiD~ 211 (394)
.+.++||.++|++-+.++++.+.+. ++.+..++|+..... .......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3447999999999999999998874 666777776532211 111223456789999942 111 3555
Q ss_pred CCccEEE
Q 016133 212 KDVRLVC 218 (394)
Q Consensus 212 p~v~~VI 218 (394)
.++++||
T Consensus 174 ~~~~~lV 180 (245)
T 3dkp_A 174 ASVEWLV 180 (245)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 5666555
No 131
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=72.21 E-value=3.4 Score=31.32 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3457999999998999999999999995 888888853
No 132
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=72.19 E-value=12 Score=35.21 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=51.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cccc-ccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 213 (394)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+.......+ . ...+|+|+|. .+.. .++..+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---D-YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---H-HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---h-cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4568999999999999999988764 57788899998876644333 2 2458999994 3333 356677
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88777
No 133
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.86 E-value=10 Score=35.69 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----cccc-ccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 213 (394)
.+.++||.++++.-+.++++.+.+. +..+..++|+.+.... .+.+..+..+|+|+|. .+.. .++..+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4567999999999999999888764 6677888888765443 4556668889999994 2222 345667
Q ss_pred ccEEE
Q 016133 214 VRLVC 218 (394)
Q Consensus 214 v~~VI 218 (394)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77776
No 134
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.69 E-value=2.7 Score=36.27 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+.....+ . ..+..+|+|+|.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTP 134 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCH
Confidence 3457999999999999998887653 577888999875443211 1 124567999984
No 135
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=71.25 E-value=1.3 Score=44.54 Aligned_cols=43 Identities=16% Similarity=0.011 Sum_probs=27.8
Q ss_pred cccEEEeCCceecChHHHHHHHh---hccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~---~~~~~~l~~iVvDEaH~l~~ 59 (394)
..+|+++++..+..+.....+.. ........++||||||.+..
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 45899888887777654433220 00123467899999999953
No 136
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.05 E-value=21 Score=27.28 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=41.9
Q ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 016133 148 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 198 (394)
Q Consensus 148 ~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~i 198 (394)
.+||....+-..++...++..|..+..++++...+-|.+-++.|....+.+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467777888888888888889999999999999888888888888655443
No 137
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=70.95 E-value=12 Score=39.53 Aligned_cols=72 Identities=6% Similarity=0.073 Sum_probs=53.1
Q ss_pred HhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-c-----c----
Q 016133 141 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----G---- 206 (394)
Q Consensus 141 ~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~-----~---- 206 (394)
....+..++|.++|+.-|.+.++++.. .|+++..+.||++..+|.... ..+|+|+|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 444456799999999999988887754 589999999999987765542 3689999962 2 1
Q ss_pred ---cccCCCCccEEE
Q 016133 207 ---MGIDRKDVRLVC 218 (394)
Q Consensus 207 ---~GiD~p~v~~VI 218 (394)
..++...+.++|
T Consensus 194 ~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAV 208 (844)
T ss_dssp SSGGGCCCCCCCEEE
T ss_pred cchhhhcccCCCEEE
Confidence 135566777766
No 138
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=70.24 E-value=5.6 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=31.4
Q ss_pred ccEEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 146 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 146 ~~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
.++|||| .+-..+...+..|...|+++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57777889999999999999999999754
No 139
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=69.84 E-value=11 Score=39.74 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=44.3
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
..+..++|.++|+.-|.++++.+.. .|+++..+.||++...|.... ..+|+|+|+.
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3456799999999999888877754 489999999999987655433 3789999973
No 140
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=68.72 E-value=9 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
.+..+++|||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34568999999988899999999999986 4455 7753
No 141
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=68.36 E-value=1.4 Score=44.30 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=27.7
Q ss_pred cccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCccccCCC
Q 016133 17 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 62 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~ 62 (394)
..+|+++++..+..+..... ........++||||||.+.+ ..
T Consensus 148 ~adIVV~~~~~l~~~~~~~~---~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREF---IDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTT---SCCCSTTEEEEETTGGGGGG-GG
T ss_pred cCCEEEeCchHhcCHHHHHh---cCCCcCCeEEEEecccchHH-HH
Confidence 36899888887766642111 11113467899999999988 53
No 142
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=66.62 E-value=17 Score=38.61 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=53.4
Q ss_pred HHhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-c-----cc--
Q 016133 140 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F-----GM-- 207 (394)
Q Consensus 140 l~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~-----~~-- 207 (394)
+....+..++|.++|+.-|.+.++++.. .|+++..+.|+++..+|.... ..+|+++|+. + ..
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 3344456799999999999888877754 589999999999987766543 2689999962 2 11
Q ss_pred -----ccCCCCccEEE
Q 016133 208 -----GIDRKDVRLVC 218 (394)
Q Consensus 208 -----GiD~p~v~~VI 218 (394)
.++...+.++|
T Consensus 221 ~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAI 236 (922)
T ss_dssp CSSGGGCCCCCCCEEE
T ss_pred hccHhhhccCCCCEEE
Confidence 35556677766
No 143
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=66.54 E-value=6.4 Score=29.95 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.3
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
.+..+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34668999999988999999999999986677889864
No 144
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=65.95 E-value=5.5 Score=32.16 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
+..++||||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356899999998788899999999999 5889999974
No 145
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=65.37 E-value=4.1 Score=32.94 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCccEEEEeCcH--HHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~--~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..++||||.+- ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 355899999987 5888999999999999999999863
No 146
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=64.06 E-value=2.8 Score=32.84 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.3
Q ss_pred CCccEEEEeCcHHH--HHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~--~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..+++|||.+-.. +...+..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35679999998776 78999999999999888889863
No 147
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=63.58 E-value=32 Score=30.98 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=50.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----c-cccCCCCc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 214 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~-~GiD~p~v 214 (394)
+.++||.++++.-+.++++.+.+. +..+..+||+.+...... .+. ..+|+|+|.-. . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 457999999999999999999853 578899999988765433 232 37899999521 2 23456677
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77763
No 148
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=63.54 E-value=3.9 Score=31.01 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 181 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988899999999999985 8888998643
No 149
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=62.69 E-value=16 Score=38.91 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=46.3
Q ss_pred HHhCCCccEEEEeCcHHHHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 140 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 140 l~~~~~~~~IVF~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
+....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3444556799999999988888877654 589999999999987766654 3789999964
No 150
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=62.51 E-value=40 Score=25.36 Aligned_cols=66 Identities=6% Similarity=-0.041 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCCccEEEEeC------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 132 AYADLCSVLKANGDTCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
..+.+.++++. .+++||.. ..-.|..+...|.+.|+....+.=...+..+..+.+......++.++
T Consensus 7 ~~~~v~~~i~~---~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 7 LKDTLEKLVNS---EKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp HHHHHHHHHTS---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred HHHHHHHHHcc---CCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 34455555554 37999987 48999999999999998877766554555555554433333444443
No 151
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=62.40 E-value=4.4 Score=32.41 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999998888999999999999 5888999963
No 152
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=62.09 E-value=5.5 Score=31.67 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999995 888899863
No 153
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.01 E-value=9.6 Score=39.02 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=50.0
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-c-CCCCc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 214 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~v 214 (394)
+++||.++|+.-+.++++.+.+. ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999999999888888765 78999999998654322221 1 24789999952 2233 3 56677
Q ss_pred cEEEE
Q 016133 215 RLVCH 219 (394)
Q Consensus 215 ~~VI~ 219 (394)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 154
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.01 E-value=4.3 Score=32.01 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999974
No 155
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.97 E-value=10 Score=32.02 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=35.3
Q ss_pred CCccEEEEeCcHHHHHH-HHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.|+++.-+++ +.+.+.+ .++.+..++|+.....+..... +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35689999999998887 5555544 3678888998765432221111 2467899885
No 156
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=61.36 E-value=4.8 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999995 889999863
No 157
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=60.78 E-value=7.3 Score=31.28 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l 179 (394)
+..+++|||.+-..+...+..|...|+. +..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 3457999999988999999999999985 77888885
No 158
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=57.97 E-value=2.1 Score=44.07 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=46.8
Q ss_pred ccEEEEeCcHHHHHHH-HHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------------cccc
Q 016133 146 TCAIVYCLERTTCDEL-SAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------------GMGI 209 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l-~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------------~~Gi 209 (394)
+++||.++++.-+.++ ++.|.+.+ +.+..+||+.+..++...+. +..+|+|+|.-. ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999999998 88887753 79999999986654332222 568899999532 2235
Q ss_pred CCCCccEEE
Q 016133 210 DRKDVRLVC 218 (394)
Q Consensus 210 D~p~v~~VI 218 (394)
.+.++++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 677788877
No 159
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=56.62 E-value=9 Score=41.13 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=46.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc-----cccc-c-CCCC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 213 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 213 (394)
++++||.++++.-+.+++..+++. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 668999999999998888887764 899999999986655322221 24689999953 1222 2 4566
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 160
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=55.54 E-value=10 Score=41.47 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=49.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEec-----ccccccc-CCCCccEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-----VAFGMGI-DRKDVRLV 217 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-----~~~~~Gi-D~p~v~~V 217 (394)
.++++||-++++.-+.+++..|.+....+..++|+++ .++..+|+|+| +.+..|- .+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999987668899999986 34678999999 3444443 35667777
Q ss_pred E
Q 016133 218 C 218 (394)
Q Consensus 218 I 218 (394)
|
T Consensus 295 V 295 (1108)
T 3l9o_A 295 I 295 (1108)
T ss_dssp E
T ss_pred E
Confidence 6
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=55.52 E-value=37 Score=29.49 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.+++|+++++.-+.++.+.+.+.++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 568999999999999999999888888 888998764 2457888884
No 162
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=55.36 E-value=7.3 Score=30.84 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
+..+++|||.+=..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988888899999999995 888889984
No 163
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=55.31 E-value=34 Score=31.46 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
+...++||||||.+... ....|.+..+..|..-+++++++-+..+..
T Consensus 107 ~~~kvviIdead~l~~~------a~naLLk~lEep~~~~~~Il~t~~~~~l~~ 153 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA------AANALLKTLEEPPAETWFFLATREPERLLA 153 (334)
T ss_dssp SSCEEEEESCGGGBCHH------HHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred CCcEEEEECchhhcCHH------HHHHHHHHhcCCCCCeEEEEEeCChHhCcH
Confidence 45789999999988642 234454445544444455555554443333
No 164
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=54.42 E-value=56 Score=24.69 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCccEEEEe------CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 133 YADLCSVLKANGDTCAIVYC------LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~------~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
.+.+..+++. .+++||. ++.-.|..+...|.+.|+....+.=..++..+..+.+.-....++.++
T Consensus 6 ~~~v~~~i~~---~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 6 NLRLKKLTHA---APCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHHHTS---SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhc---CCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 3445555543 4799998 577889999999999998877766555566555544433233444443
No 165
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=54.10 E-value=13 Score=34.14 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=28.8
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
.+...++||||||.+.. .....|.+..+..|+.-+++|.++-+..+
T Consensus 80 ~~~~kvviIdead~lt~------~a~naLLk~LEep~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ------QAANAFLKALEEPPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp SSSSEEEEETTGGGBCH------HHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred cCCceEEEeccHHHhCH------HHHHHHHHHHhCCCCCeEEEEEECChHhC
Confidence 34578999999998863 22345555666665555566665544333
No 166
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=53.56 E-value=91 Score=25.49 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=48.9
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCCCccEEEEecC
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 222 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~ 222 (394)
.+.+.|.|++...+..+.+.|...|+++..+..+.. ...-.|.|.|.-...|+-+ +.||.+++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 456888899999999999999999998877766431 1234699999999999986 45666664
No 167
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=53.38 E-value=12 Score=36.34 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=39.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
+.++||.|+++.-+.++++.|.+.++. +..+||+.+. ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 458999999999999999999998999 9999998753 467888885
No 168
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=52.89 E-value=14 Score=33.30 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCCH
Q 016133 134 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 181 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 181 (394)
..+...+...++.++++||.+-..+...+..|...|+ ++..+.||+..
T Consensus 170 ~~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 170 DYVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp HHHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 3444444445667899999999999999999999998 58889998643
No 169
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=51.58 E-value=19 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.8
Q ss_pred HHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHH-hCCC-ceEEecCCC
Q 016133 134 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLS-AGGI-SCAAYHAGL 179 (394)
Q Consensus 134 ~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~-~~g~-~~~~~h~~l 179 (394)
+.+...+.. .+..++||||.+-..+...+..|. ..|+ ++..|.||+
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 344455544 345689999999888888999999 8898 588999986
No 170
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.67 E-value=87 Score=27.32 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCc-cEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 133 YADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 133 ~~~l~~~l~~~~~~-~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
...+.++++..+.. +..|||.+-..+..+...|++.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 55667777765432 5677888888888888888887654
No 171
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=48.92 E-value=18 Score=32.45 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCCH
Q 016133 135 DLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 181 (394)
Q Consensus 135 ~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 181 (394)
.+..++.. .+..++||||.+-..+...+..|...|+ ++..|.||+..
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 44444442 3456899999998888999999999999 48899999864
No 172
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=48.90 E-value=67 Score=23.64 Aligned_cols=66 Identities=6% Similarity=0.059 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCccEEEEe------CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 132 AYADLCSVLKANGDTCAIVYC------LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~------~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
..+.+..+++. .+++||. ++...|..+...|.+.++....+.-...+..+....+.+....++.++
T Consensus 6 ~~~~~~~~i~~---~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 6 LEERLKVLTNK---ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHHHHHTS---SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhcc---CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 34455555543 3688887 467889999999999888877776666666666655555444454443
No 173
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=48.76 E-value=87 Score=24.71 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhCCCccEEEEeC------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 131 DAYADLCSVLKANGDTCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
...+.+..++... +++||+. +.-.|..+...|.+.|+....+.-...+..+..+.+......+++|+
T Consensus 23 ~~~~~v~~~i~~~---~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 23 TTIEKIQRQIAEN---PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHHHHHHC---SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHHhccC---CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 4456666666653 6889977 67889999999999999877777666666666555444333444443
No 174
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=47.88 E-value=35 Score=33.71 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=50.0
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----cc--ccC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM--GID 210 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~~--GiD 210 (394)
.++||.++|+.-+.++++.+.+. +..+..+.|+.+... ..+.+..+..+|+|+|.-. .. ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 47999999999999999988762 345777788776543 3455556678999999632 22 234
Q ss_pred CCCccEEE
Q 016133 211 RKDVRLVC 218 (394)
Q Consensus 211 ~p~v~~VI 218 (394)
+..+++||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 66788877
No 175
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=47.26 E-value=94 Score=23.82 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCccEEEEeCc------HHHHHHHHHHHHhCCCc---eEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 016133 132 AYADLCSVLKANGDTCAIVYCLE------RTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVV 199 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s------~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~iL 199 (394)
..+.+..+++.+ +++||..+ .-.|..+.+.|.+.|+. ...+.-...++.+....+......++.|
T Consensus 5 ~~~~v~~~i~~~---~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 5 IRKAIEDAIESA---PVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HHHHHHHHHHSC---SEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHHhccC---CEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 345566666643 69999884 88999999999999887 5555555556655554443323334443
No 176
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=47.23 E-value=27 Score=29.89 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=33.4
Q ss_pred HhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 38 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 38 ~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
.+.......++||+||.-....+|.--. ..+..+....|...-+.+|.-.++.
T Consensus 113 ~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 113 KRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 3444457799999999977666663222 3344455556666667777765554
No 177
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=46.13 E-value=98 Score=23.70 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCccEEEEeC------cHHHHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 016133 134 ADLCSVLKANGDTCAIVYCL------ERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRKQVVV 200 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~~------s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~~iLV 200 (394)
+.+.++++.+ +++||.. +.-.|..+.+.|.+.|++ ...+.=...++.+..+.+......++.|+
T Consensus 11 ~~v~~~i~~~---~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 11 EQLDALVKKD---KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHHHHHS---SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHhccC---CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 4455666654 6999988 488999999999999985 76666555666665544433333444443
No 178
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.95 E-value=7.7 Score=33.30 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.1
Q ss_pred CCccEEEEecCCccc
Q 016133 44 GLLNLVAIDEAHCIS 58 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~ 58 (394)
++-.+|||||||.+.
T Consensus 86 ~~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVW 100 (199)
T ss_dssp GTTCEEEETTGGGTS
T ss_pred cCceEEEEEChhhhc
Confidence 346689999999984
No 179
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=45.83 E-value=68 Score=26.39 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
..-.+|+|||+|.+.. .....+..+....+....+++++..+.
T Consensus 101 ~~~~vliiDe~~~l~~------~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADALTA------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhhcCH------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4466899999998753 223345555555444334455544443
No 180
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=45.65 E-value=72 Score=28.22 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=44.1
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHH-HHHHHHHh--cCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR-SSVLDDWI--SSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R-~~~~~~f~--~g~~~iLVaT~ 203 (394)
+-++++.-.+.+.++++++.++..|..+..+.++++..+- ...++... -|.++|||..-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3467777788889999999999999999999999876543 22222222 28899999764
No 181
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=45.52 E-value=14 Score=30.16 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=29.8
Q ss_pred CccEEEEeCcH---------HHHHHHHHHHHhCCCceEEecCCC
Q 016133 145 DTCAIVYCLER---------TTCDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 145 ~~~~IVF~~s~---------~~~~~l~~~L~~~g~~~~~~h~~l 179 (394)
..++||||.+- ..+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999887 357888999999999999999985
No 182
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=45.14 E-value=8.3 Score=38.74 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=50.4
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-----cc--ccC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM--GID 210 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-----~~--GiD 210 (394)
.++||.++|+.-+.++++.+.+. .+.+..++|+.+... ....+..+..+|+|+|.-. .. ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 47999999999999999888762 355777788766543 4455566678999999532 22 345
Q ss_pred CCCccEEEE
Q 016133 211 RKDVRLVCH 219 (394)
Q Consensus 211 ~p~v~~VI~ 219 (394)
+..+++||.
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 677888773
No 183
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.81 E-value=29 Score=32.08 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------ccccCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 213 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 213 (394)
.+.++||.++++.-+.++++.+.+. ++.+..++++..... .....+|+|+|.-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 4568999999999999999998863 556677776643221 13367899999532 33456778
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 184
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=44.57 E-value=26 Score=33.62 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 7 IYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.+.+....+...++++.|- .+.+++++..+.++..... -++|+||+|.
T Consensus 221 le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~lli~DEv~~ 275 (449)
T 2cjg_A 221 ARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFD-ALLIFDEVQT 275 (449)
T ss_dssp HHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTT-CEEEEECTTT
T ss_pred HHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCC-cEEEEecccc
Confidence 44445432235788998884 3556778888877665554 3789999997
No 185
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=44.33 E-value=19 Score=34.22 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=32.8
Q ss_pred HHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 7 IYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.+.+....+...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 192 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i-llI~DEv~~ 246 (434)
T 3l44_A 192 LKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA-LVIYDEVIT 246 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC-EEEEECTTT
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 33344432224678888885 33377888888777666555 799999996
No 186
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=43.98 E-value=25 Score=33.32 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 6 KIYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.+.+........++++.|- +..+++++..+.++.....+ +||+||+|.
T Consensus 188 ~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~ 243 (427)
T 3fq8_A 188 AVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-LLVFDEVIT 243 (427)
T ss_dssp HHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred HHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 344445543334788888885 23345677777666655544 799999996
No 187
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.69 E-value=1e+02 Score=22.85 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=31.1
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
...++++++|-. +.+ ...+.-+..++...|+.|++++|+.........
T Consensus 49 ~~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~ 96 (130)
T 3eod_A 49 GFTPDLMICDIA--MPR-----MNGLKLLEHIRNRGDQTPVLVISATENMADIAK 96 (130)
T ss_dssp TCCCSEEEECCC------------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHH
T ss_pred cCCCCEEEEecC--CCC-----CCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHH
Confidence 345889999832 221 111345666777888999999999887765543
No 188
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=42.45 E-value=24 Score=32.95 Aligned_cols=69 Identities=12% Similarity=-0.005 Sum_probs=46.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc------c-cccCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDR 211 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~-~GiD~ 211 (394)
.+.++||.++++.-+.++++.+.+. +..+...+++..... ......+|+|+|.-. . ..+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 3447999999999999998888763 456666776654321 124456899999532 1 34566
Q ss_pred CCccEEEE
Q 016133 212 KDVRLVCH 219 (394)
Q Consensus 212 p~v~~VI~ 219 (394)
.++++||.
T Consensus 167 ~~~~~iVi 174 (412)
T 3fht_A 167 KKIKVFVL 174 (412)
T ss_dssp GGCCEEEE
T ss_pred hhCcEEEE
Confidence 77888773
No 189
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=41.86 E-value=20 Score=34.28 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=29.3
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4789999885 33467888888776665554 799999997
No 190
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=41.71 E-value=59 Score=31.53 Aligned_cols=69 Identities=7% Similarity=-0.030 Sum_probs=50.5
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCC----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEecccc-ccc--cCCCCccE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMG--IDRKDVRL 216 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-~~G--iD~p~v~~ 216 (394)
+.+++||.++++.-+.++++.|.+.+ ..+..+||+.+..++ ..+..+|+|+|.-. ... ..+.++.+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 34489999999999999999998762 367889998876553 46778999999632 111 34556777
Q ss_pred EEE
Q 016133 217 VCH 219 (394)
Q Consensus 217 VI~ 219 (394)
||.
T Consensus 229 iIi 231 (510)
T 2oca_A 229 MMN 231 (510)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 191
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=41.69 E-value=40 Score=29.33 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHHhhccCCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEe
Q 016133 36 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 87 (394)
Q Consensus 36 ~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lS 87 (394)
.+.........++|||||++.+.. ..+..+..+... +.++++..
T Consensus 80 ~i~~~~~~~~~dvViIDEaQ~l~~------~~ve~l~~L~~~--gi~Vil~G 123 (223)
T 2b8t_A 80 YIMSNSFNDETKVIGIDEVQFFDD------RICEVANILAEN--GFVVIISG 123 (223)
T ss_dssp HHHSTTSCTTCCEEEECSGGGSCT------HHHHHHHHHHHT--TCEEEEEC
T ss_pred HHHHHhhCCCCCEEEEecCccCcH------HHHHHHHHHHhC--CCeEEEEe
Confidence 333333345689999999997542 223344444442 56655543
No 192
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=41.27 E-value=17 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
.+..++|+||.+-..+...+..|...|.++..|.||+.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 34568999999999999999999999977888999864
No 193
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=41.23 E-value=24 Score=33.38 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.5
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++ ....+ +||+||+|.
T Consensus 199 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~-~lI~DEv~~ 242 (424)
T 2e7u_A 199 EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV-LLIADEVMT 242 (424)
T ss_dssp GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC-EEEEECTTT
T ss_pred CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC-EEEEecCcc
Confidence 4678998885 23367888888877 65544 799999997
No 194
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=41.02 E-value=29 Score=33.22 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCCH
Q 016133 134 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 181 (394)
Q Consensus 134 ~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 181 (394)
+.+.+.+.. .+..++||||.+-..+..++..|...|+ ++..|.|++..
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 344444443 3456899999998889999999999998 58899998643
No 195
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=39.49 E-value=22 Score=31.58 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.3
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l 179 (394)
+..++||||.+-..+...+..|...|+. +..|.||+
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 4568999999988888999999999995 88899885
No 196
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=39.46 E-value=22 Score=31.74 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=30.6
Q ss_pred CCccEEEEeCcHHH-HHHHHHHHHhCCC-ceEEecCCCC
Q 016133 144 GDTCAIVYCLERTT-CDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~-~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
+..++||||.+-.. +..++..|...|+ ++..+.||+.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46689999998655 8888999999999 5889999863
No 197
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.42 E-value=43 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=23.7
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
.-.+|||||+|.+... ....|..+....+....++++++.+.
T Consensus 107 ~~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG------AQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGGSCHH------HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcccCCHH------HHHHHHHHHhccCCCceEEEEeCChh
Confidence 3678999999987632 22334444555444334445544433
No 198
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=39.33 E-value=76 Score=28.98 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=40.1
Q ss_pred ccEEEEeCc-----------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 146 TCAIVYCLE-----------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 146 ~~~IVF~~s-----------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
+-+||++|. ...++.|++.|+..|+.|. .+-+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999887 6789999999999999965 5668999999999999964
No 199
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=39.03 E-value=42 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCccEEEEeCcHHHHHHHHHHHHh-CCCc-eEEecCCC
Q 016133 143 NGDTCAIVYCLERTTCDELSAYLSA-GGIS-CAAYHAGL 179 (394)
Q Consensus 143 ~~~~~~IVF~~s~~~~~~l~~~L~~-~g~~-~~~~h~~l 179 (394)
.+..++|+||.+-..+...+..|.+ .|+. +..|.||+
T Consensus 224 ~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 224 DNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 3466899999998888888899986 8985 88999985
No 200
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=38.99 E-value=26 Score=31.68 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 135 DLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 135 ~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
.+...+.. .+..++||||.+-..+...+..|...|+. +..|.||+.
T Consensus 227 ~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 44444442 34668999999988888888999999985 889999864
No 201
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=38.54 E-value=41 Score=29.83 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCCccEEEEeCcH-HHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 143 NGDTCAIVYCLER-TTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~-~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
.+..+++|||.+- ..+..++..|...|+ ++..+.||+.
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3456899999884 357788889999998 6888999853
No 202
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=38.14 E-value=16 Score=28.12 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=29.1
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC------CC-ceEEecCCCCH
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG------GI-SCAAYHAGLND 181 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~------g~-~~~~~h~~l~~ 181 (394)
.+++|||.+-..+...+..|.+. |. ++..+.||+..
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 38999999988888899999887 33 68888898643
No 203
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=38.04 E-value=38 Score=32.14 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=27.5
Q ss_pred CcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 16 PSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 16 ~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+...++++.|- +..+++++..+.++.....+ +||+||+|.
T Consensus 200 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DE~~~ 245 (439)
T 3dxv_A 200 GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI-LVVCDEVKV 245 (439)
T ss_dssp TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 35788888885 23355567777666554444 799999996
No 204
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=37.87 E-value=23 Score=33.93 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHh-cCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 6 KIYEDLD-SGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 6 ~i~~~l~-~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.+.+. .+.+...++++.|- ++.+++++..+.++.....+ +||+||+|.
T Consensus 203 ~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~ 259 (452)
T 3n5m_A 203 EVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGA-LLISDEVIC 259 (452)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred HHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCC-EEEEecchh
Confidence 3444444 22234788888886 33477888888666554444 799999997
No 205
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=37.66 E-value=1.1e+02 Score=22.75 Aligned_cols=54 Identities=6% Similarity=0.083 Sum_probs=38.0
Q ss_pred ccEEEEeC------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 016133 146 TCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 199 (394)
Q Consensus 146 ~~~IVF~~------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iL 199 (394)
.+++||.. +.-.|..+...|.+.|+....+.=...+..+....+......+++|
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 36888876 5568999999999999988888777666666655544433344444
No 206
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=36.87 E-value=80 Score=23.92 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
...++||+|- +.. ...+..+..++...++.|++++|+.........
T Consensus 47 ~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~ 92 (142)
T 2qxy_A 47 EKIDLVFVDV---FEG-----EESLNLIRRIREEFPDTKVAVLSAYVDKDLIIN 92 (142)
T ss_dssp SCCSEEEEEC---TTT-----HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHH
T ss_pred cCCCEEEEeC---CCC-----CcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Confidence 4589999995 221 223456677888888999999999877665443
No 207
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=36.20 E-value=25 Score=36.08 Aligned_cols=67 Identities=10% Similarity=0.040 Sum_probs=48.8
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccccC-CCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMGID-RKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~GiD-~p~v~ 215 (394)
++++++.++++.-+.++++.++. .|+.+..++|+....++ ..+..+|+|+|. .+..+.. +.+++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 56899999999999999998843 37889999998765432 124788999995 2333322 56777
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 141 ~vI 143 (702)
T 2p6r_A 141 CLV 143 (702)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 208
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=35.89 E-value=23 Score=33.93 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=28.3
Q ss_pred cccEEEeCCc-------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE-------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe-------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~lI~DEv~~ 255 (448)
T 3dod_A 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV-LMIVDEVAT 255 (448)
T ss_dssp GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC-EEEEecccc
Confidence 4677777774 34577788888776655544 799999997
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=35.88 E-value=25 Score=29.42 Aligned_cols=14 Identities=29% Similarity=0.154 Sum_probs=11.9
Q ss_pred CccEEEEecCCccc
Q 016133 45 LLNLVAIDEAHCIS 58 (394)
Q Consensus 45 ~l~~iVvDEaH~l~ 58 (394)
..++|+|||+|.+.
T Consensus 76 ~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 76 DTRGVFIDEVQFFN 89 (184)
T ss_dssp TEEEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 57899999999863
No 210
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=35.66 E-value=39 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCCccEEEEeCcHH-HHHHHHHHHHhCCCc-eEEecCCC
Q 016133 143 NGDTCAIVYCLERT-TCDELSAYLSAGGIS-CAAYHAGL 179 (394)
Q Consensus 143 ~~~~~~IVF~~s~~-~~~~l~~~L~~~g~~-~~~~h~~l 179 (394)
.+..+++|||.+-. .+..++..|...|+. +..+.||+
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 34568999998765 788889999999994 78899985
No 211
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=35.31 E-value=45 Score=27.95 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=23.2
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
-.+|||||+|.+.. .....+..+....+....++++++.+.
T Consensus 127 ~~vlviDe~~~l~~------~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 127 FKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SEEEEEETGGGSCH------HHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ceEEEEECcccccH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 46899999998642 223444444444444445555554433
No 212
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=35.19 E-value=31 Score=32.63 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 7 IYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.+.+....+...++++.|- ....++++..+.++.....+ +||+||+|.
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~-lli~DEv~~ 244 (429)
T 4e77_A 190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA-LLIIDEVMT 244 (429)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEEETTT
T ss_pred HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 34444443335788888886 22345567777665544333 799999997
No 213
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.19 E-value=1.3e+02 Score=22.10 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=72.5
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCCEEEecCCCCCCeEEEEEEcCchhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHH
Q 016133 83 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 162 (394)
Q Consensus 83 ~l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~ 162 (394)
++.+-.|-..+....|.+.. .|.-|.++.....++.-.....+.....-.+++|..+.+.-..++.
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 56666777777666655543 2334666666555555556666666666678999999999999999
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEec
Q 016133 163 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 202 (394)
Q Consensus 163 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT 202 (394)
+.+.+.|+.+..+--+....+-.+.-....+....|--.|
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 9999999999988888877775555555555444443333
No 214
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=35.13 E-value=46 Score=25.98 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred eCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 016133 152 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 191 (394)
Q Consensus 152 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 191 (394)
|.+++.|..+..+|..+|+....+.-.++++.|.+..++.
T Consensus 13 c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 3456788999999999999999999888999998888776
No 215
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=34.56 E-value=33 Score=37.08 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=47.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccc-cCCCCccEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRLV 217 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~~V 217 (394)
.+.++||-++++.-+.+.+..|.+....+..++|+.+.. ...+|+|+|. .+.+| ..+.++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 356899999999999999999987644888899987532 3578999985 23333 445666776
Q ss_pred E
Q 016133 218 C 218 (394)
Q Consensus 218 I 218 (394)
|
T Consensus 197 V 197 (1010)
T 2xgj_A 197 I 197 (1010)
T ss_dssp E
T ss_pred E
Confidence 6
No 216
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=34.31 E-value=51 Score=30.27 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
+.-.+|||||+|.+.. .....|..+....+...+++++++-++
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3457899999998753 223445555555554445555555443
No 217
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=34.26 E-value=1e+02 Score=24.87 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCccEEEEecCCcccc-CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 43 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~-~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
...+++|++|= + +.+ .| +.-+..++...|+.|++++|+.........
T Consensus 49 ~~~~dlvl~D~-~-lp~~~g------~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~ 96 (184)
T 3rqi_A 49 AEKFEFITVXL-H-LGNDSG------LSLIAPLCDLQPDARILVLTGYASIATAVQ 96 (184)
T ss_dssp TSCCSEEEECS-E-ETTEES------HHHHHHHHHHCTTCEEEEEESSCCHHHHHH
T ss_pred hCCCCEEEEec-c-CCCccH------HHHHHHHHhcCCCCCEEEEeCCCCHHHHHH
Confidence 34588999982 2 222 23 345666777888999999999887765543
No 218
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=34.20 E-value=23 Score=33.68 Aligned_cols=39 Identities=23% Similarity=0.483 Sum_probs=27.2
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~ 244 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA-LLIFDEVMT 244 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 4678888886 23356778877665554444 799999995
No 219
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=34.15 E-value=32 Score=33.47 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=37.4
Q ss_pred HHHHHhcCCCcccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCccccCCCCCH
Q 016133 7 IYEDLDSGKPSLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 65 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g~~fr 65 (394)
+.+.+....+++-.+++=|- +...|+|+..|.++.....+ ++|+||+++ .-.|..|.
T Consensus 210 l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~-lLI~DEV~t-GR~G~~~a 272 (454)
T 4ao9_A 210 ARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGA-LLVFDEVMT-SRLAPHGL 272 (454)
T ss_dssp HHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTC-EEEEECTTG-GGGSTTCH
T ss_pred HHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCC-EEEEECCCc-CCCccccc
Confidence 34445554446777888774 34478899998777665544 789999997 33443343
No 220
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.99 E-value=1.4e+02 Score=26.01 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 133 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
.+.+.+++... +.+..|||.+-..+..+...|.+.|+.
T Consensus 174 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 174 RDGAIKVLTGA-DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHTC--CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCC-CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 45566666544 345678899988888899999887654
No 221
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=33.93 E-value=39 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCccEEEEe-CcHHHHH----HHHHHHHhCCC---ceEEecCCCCH
Q 016133 134 ADLCSVLKANGDTCAIVYC-LERTTCD----ELSAYLSAGGI---SCAAYHAGLND 181 (394)
Q Consensus 134 ~~l~~~l~~~~~~~~IVF~-~s~~~~~----~l~~~L~~~g~---~~~~~h~~l~~ 181 (394)
..+...+.......+|+|| .+-..+. .++..|.+.|+ .+..+.||+..
T Consensus 57 ~~l~~~l~~~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 57 EKLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp HHHHHHHHHTTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred HHHHHHhcccCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 3444444433333355559 4533333 34477888886 67889998643
No 222
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=33.89 E-value=42 Score=30.40 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=23.8
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 92 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~ 92 (394)
...+|+|||+|.+.. ......|..+....+....+.++++.+.
T Consensus 105 ~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-----AESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGG-----HHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCc-----HHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 578999999998861 1122344444444333334444555444
No 223
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.65 E-value=97 Score=23.32 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=31.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
...+++|++|-. +.+- -...+..+..++...++.|++++|+........
T Consensus 48 ~~~~dlvi~D~~--l~~~---~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 96 (136)
T 3kto_A 48 SDDAIGMIIEAH--LEDK---KDSGIELLETLVKRGFHLPTIVMASSSDIPTAV 96 (136)
T ss_dssp CTTEEEEEEETT--GGGB---TTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHH
T ss_pred ccCCCEEEEeCc--CCCC---CccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence 345788888832 2110 012245566788878899999999988776544
No 224
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=33.59 E-value=1e+02 Score=25.68 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=38.3
Q ss_pred CccEEEEeCc-----------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 145 DTCAIVYCLE-----------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 145 ~~~~IVF~~s-----------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
.+.+||+.|. ...++.|++.|+..|+.|. .+-.++..+-.+.+++|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3456777654 5889999999999999975 5667888888889999864
No 225
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=33.58 E-value=1.4e+02 Score=21.87 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
...+++++|-- +... ..+..+..++...|+.|++++|+........
T Consensus 46 ~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (126)
T 1dbw_A 46 VRNGVLVTDLR--MPDM-----SGVELLRNLGDLKINIPSIVITGHGDVPMAV 91 (126)
T ss_dssp CCSEEEEEECC--STTS-----CHHHHHHHHHHTTCCCCEEEEECTTCHHHHH
T ss_pred CCCCEEEEECC--CCCC-----CHHHHHHHHHhcCCCCCEEEEECCCCHHHHH
Confidence 35789999832 2211 1134455677777899999999987765443
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.51 E-value=55 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=27.0
Q ss_pred CccEEEEecCCccccCCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhHH---HHHHHHh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQ---KDVMESL 102 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~-l~~l~~~~~~~~~l~lSAT~~~~~~---~~i~~~l 102 (394)
..+++|+||.+.+.... +..+.. +..+... +.+++++|...++... .++...+
T Consensus 83 ~~~lLilDE~~~~~~~~---~~~l~~li~~~~~~--g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE---QALLFSIFNRFRNS--GKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp GCSEEEEESTTCCCSHH---HHHHHHHHHHHHHH--TCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred CCCEEEEeCccccChHH---HHHHHHHHHHHHHc--CCcEEEEECCCCHHHccccHHHHHHH
Confidence 36899999999755322 222222 2222222 3454566666544322 4555555
No 227
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=33.15 E-value=24 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=14.2
Q ss_pred CCCccccccCCCCceeEee
Q 016133 373 SGSEEDISDCDGNINLVII 391 (394)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~ 391 (394)
.-+++.|||++|+..|++.
T Consensus 8 lrqgdnisddedevrvalv 26 (29)
T 2pjx_C 8 LRQGDNISDDEDEVRVALV 26 (29)
T ss_pred hhcCCCCCCccceeEEEEE
Confidence 3467889998888877654
No 228
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=33.04 E-value=37 Score=32.11 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=27.8
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 203 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~ 247 (433)
T 1zod_A 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM-LLILDEAQT 247 (433)
T ss_dssp CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC-EEEEecccc
Confidence 4788988885 34466778777665544333 799999997
No 229
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=32.98 E-value=70 Score=32.77 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=48.9
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc--c-ccccCCCCccEEEEe
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--F-GMGIDRKDVRLVCHF 220 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~-~~GiD~p~v~~VI~~ 220 (394)
+.++||-++|+.-+.++++.+.+ .+..+....|+.. ..+..+|+|+|.- + ...++..++++||.=
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlD 325 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIICD 325 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEET
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEEc
Confidence 44899999999999999988865 3667777777753 4677899999973 2 234666778888753
Q ss_pred c
Q 016133 221 N 221 (394)
Q Consensus 221 ~ 221 (394)
.
T Consensus 326 E 326 (666)
T 3o8b_A 326 E 326 (666)
T ss_dssp T
T ss_pred c
Confidence 3
No 230
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=32.61 E-value=38 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCCccEEEEeCcHH-HHHHHHHHHHhCCCc-eEEecCCCC
Q 016133 143 NGDTCAIVYCLERT-TCDELSAYLSAGGIS-CAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s~~-~~~~l~~~L~~~g~~-~~~~h~~l~ 180 (394)
.+..+++|||.+-. .+..++..|...|+. +..+.||+.
T Consensus 77 ~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 77 SNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 34568999998866 578889999999984 888999863
No 231
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.51 E-value=2e+02 Score=29.23 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CC-ceEEec--------------------CCC--C---HHHH
Q 016133 132 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GI-SCAAYH--------------------AGL--N---DKAR 184 (394)
Q Consensus 132 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~-~~~~~h--------------------~~l--~---~~~R 184 (394)
+.-.+..++... +.++||.+++...|.+++..|+.. +- .+..|- ... + ...|
T Consensus 41 kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R 119 (664)
T 1c4o_A 41 KTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLR 119 (664)
T ss_dssp HHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHH
Confidence 333344444433 347999999999999999999876 22 233332 222 2 4578
Q ss_pred HHHHHHHhcCCCeEEEecccccccc
Q 016133 185 SSVLDDWISSRKQVVVATVAFGMGI 209 (394)
Q Consensus 185 ~~~~~~f~~g~~~iLVaT~~~~~Gi 209 (394)
..++..+.+++-.|||+|-..-.|+
T Consensus 120 ~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 120 HSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHhCCCeEEEecHHHHhcC
Confidence 8899999877777888886544553
No 232
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=32.37 E-value=20 Score=36.92 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccccC-CCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMGID-RKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~GiD-~p~v~ 215 (394)
+.++++-++++.-+.++++.++. .|+.+..++|+.+...+. .+..+|+|+|. .+..+.. +.+++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 46889999999999999999853 488999999987655431 24678999996 2222222 45677
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 141 ~vI 143 (720)
T 2zj8_A 141 ILV 143 (720)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 233
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=31.89 E-value=61 Score=28.97 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
+.-.+|||||+|.+.. .....|..+....+....++++++.+...
T Consensus 109 ~~~~vliiDe~~~l~~------~~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ------DAQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp CSCEEEEEETGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCeEEEEeCCCcCCH------HHHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 3467899999998753 22344555555554444455555554443
No 234
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=31.73 E-value=49 Score=30.27 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=30.4
Q ss_pred CCccEEEEeCcHH-HHHHHHHHHHhCCCc-eEEecCCC
Q 016133 144 GDTCAIVYCLERT-TCDELSAYLSAGGIS-CAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~-~~~~l~~~L~~~g~~-~~~~h~~l 179 (394)
+..++||||.+-. .+..++..|+..|+. +..+.||+
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4568999999765 788899999999995 88899985
No 235
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=31.35 E-value=67 Score=28.81 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 154 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 154 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
+...++.|...|+..|+.|. .+-+++.++-.+.+++|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 45789999999999999964 5678999998999999975
No 236
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=31.00 E-value=2.4e+02 Score=23.85 Aligned_cols=42 Identities=7% Similarity=-0.048 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCC
Q 016133 129 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 170 (394)
Q Consensus 129 ~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~ 170 (394)
.....+.+.+++...++.+..|||.+-..+..+...|++.|+
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 163 RECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 345566677777765423567888888888888888888764
No 237
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=30.70 E-value=34 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCcccEEEeCCceecChHHHHHHHhhccCCCccEEEEecC
Q 016133 15 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 54 (394)
Q Consensus 15 ~~~~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEa 54 (394)
.|+++.++++||...+...+..+.+......|.+.+++..
T Consensus 84 ~~~~d~ivvs~Et~~~~~~l~~~~~~~G~~~l~V~~v~~~ 123 (148)
T 3do8_A 84 DVDFEYLVVSPETYEMALKINQKREELGKRKITIVKVDWM 123 (148)
T ss_dssp TSCCSEEEECTTTHHHHHHHHHHHHHHTCCCCEEEEEECC
T ss_pred CCCCCEEEEChhhcccHHHHHHHHHHcCCCeeEEEEeccE
Confidence 4678999999998877777777766555556688888865
No 238
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.69 E-value=2.7e+02 Score=24.20 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
....+.+.+++...+ .+..|||.+-..+..+...|++.|+.
T Consensus 172 ~~~~~~~~~~l~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 172 PGGYLAASRLLALEV-PPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHHSSS-CCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCC-CCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 455667777777643 45678899988888888999887765
No 239
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=30.55 E-value=54 Score=35.34 Aligned_cols=49 Identities=8% Similarity=0.063 Sum_probs=39.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+.++||.++++.-+.+++..|.+. ++.+..+||+.+ .+++.+|+|+|.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 3457999999999999999999986 678999999875 235678888884
No 240
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=30.38 E-value=36 Score=31.91 Aligned_cols=39 Identities=18% Similarity=0.478 Sum_probs=27.6
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
..++++++|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~ 243 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-MLIADEVQS 243 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhh
Confidence 4788999883 44466777777665544333 799999997
No 241
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=30.31 E-value=34 Score=33.01 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=44.6
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccc-------cccCCCC
Q 016133 146 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGIDRKD 213 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-------~GiD~p~ 213 (394)
.++||.++++.-+.+++..+.+. ++.+....++..... ......+|+|+|.-.- ..+++.+
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 37999999999999998777652 455555555543211 1133558999996422 3567788
Q ss_pred ccEEEE
Q 016133 214 VRLVCH 219 (394)
Q Consensus 214 v~~VI~ 219 (394)
+++||.
T Consensus 236 ~~~iVi 241 (479)
T 3fmp_B 236 IKVFVL 241 (479)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888873
No 242
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=29.89 E-value=41 Score=31.70 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=26.4
Q ss_pred cccEEEeCCc-------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE-------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe-------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++..... -+||+||+|.
T Consensus 204 ~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~-~~li~De~~~ 249 (429)
T 1s0a_A 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG-ILLIADEIAT 249 (429)
T ss_dssp TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT-CEEEEECTTT
T ss_pred CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC-CEEEEeehhh
Confidence 4678888885 2345677777765544333 3799999996
No 243
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=29.48 E-value=36 Score=33.46 Aligned_cols=76 Identities=12% Similarity=-0.033 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccccccccCCC
Q 016133 133 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 212 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 212 (394)
++.|..+++.. +.+++|.|.|...++.+.+.|.+.|+.+...... . .+..| .|.++...+..|+-.|
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcccC
Confidence 56777777543 4589999999999999999999998876544321 1 12234 4666667889999988
Q ss_pred CccEEEEec
Q 016133 213 DVRLVCHFN 221 (394)
Q Consensus 213 ~v~~VI~~~ 221 (394)
+.+++|.-+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888777543
No 244
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=29.41 E-value=1.2e+02 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHhhccCCCccEEEEecCCcccc
Q 016133 33 FMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 33 ~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
....+..+.....+++||||+.+.+..
T Consensus 301 i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 301 IRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 334444454445699999999998874
No 245
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=29.36 E-value=45 Score=31.99 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=28.8
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- ++.+++++..+.++.....+ +||+||+|+
T Consensus 219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~ 263 (459)
T 4a6r_A 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDV-LLVADEVIC 263 (459)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 4678888875 34477788888776665555 799999997
No 246
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.04 E-value=1.1e+02 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=30.5
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.+++|++|=. +.+. ..+..+..++...++.|+|++|+........
T Consensus 58 ~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 102 (153)
T 3hv2_A 58 EVDLVISAAH--LPQM-----DGPTLLARIHQQYPSTTRILLTGDPDLKLIA 102 (153)
T ss_dssp CCSEEEEESC--CSSS-----CHHHHHHHHHHHCTTSEEEEECCCCCHHHHH
T ss_pred CCCEEEEeCC--CCcC-----cHHHHHHHHHhHCCCCeEEEEECCCCHHHHH
Confidence 4788999832 2221 1234566677788899999999987766544
No 247
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.95 E-value=58 Score=27.75 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.6
Q ss_pred CccEEEEecCCcc
Q 016133 45 LLNLVAIDEAHCI 57 (394)
Q Consensus 45 ~l~~iVvDEaH~l 57 (394)
.+++|+||||+.+
T Consensus 91 ~~DvIlIDEaQFf 103 (195)
T 1w4r_A 91 GVAVIGIDEGQFF 103 (195)
T ss_dssp TCSEEEESSGGGC
T ss_pred CCCEEEEEchhhh
Confidence 4899999999987
No 248
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=28.86 E-value=61 Score=27.60 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHH----HHHHHHHHHhcCCCeEEEeccccc
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK----ARSSVLDDWISSRKQVVVATVAFG 206 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~----~R~~~~~~f~~g~~~iLVaT~~~~ 206 (394)
..++...+..++.+-..++|...|=+.+..+++.+....+-+..+|.|.... --.+..+.+.+.-.+|+.+|-+|+
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILS 109 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEecccc
Confidence 3444445555555555777878888888888887722233456777764321 113445666777889999998876
No 249
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=28.77 E-value=26 Score=31.92 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCCCH
Q 016133 134 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 181 (394)
Q Consensus 134 ~~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 181 (394)
+.+.+.+.. .+..++|+||.+=..+...+..|...|+ ++..|.|++..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 344444443 2456899999988777788888999998 68888898643
No 250
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=28.40 E-value=3e+02 Score=26.75 Aligned_cols=106 Identities=13% Similarity=0.018 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhC-CCceEEecCC-------C-C----HHHHHHHHHHHhcCCCe
Q 016133 131 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAG-------L-N----DKARSSVLDDWISSRKQ 197 (394)
Q Consensus 131 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~-g~~~~~~h~~-------l-~----~~~R~~~~~~f~~g~~~ 197 (394)
.+.-.+..+++.. ++++||.+++...|.+++..|+.. +-.+..|=+. . + ..+|..++.++.+++..
T Consensus 26 ~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ 104 (483)
T 3hjh_A 26 ACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG 104 (483)
T ss_dssp HHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCC
Confidence 3444455555554 458999999999999999999875 3334433221 1 1 24578888888888888
Q ss_pred EEEeccccccccCCC-----CccEEEEecCCCCHHHHHHHHhhcc
Q 016133 198 VVVATVAFGMGIDRK-----DVRLVCHFNIPKSMEAFYQESGRAG 237 (394)
Q Consensus 198 iLVaT~~~~~GiD~p-----~v~~VI~~~~p~s~~~y~Qr~GRag 237 (394)
|||+|-..-++.=.| .-.+.+..+-..+.+.+.++.-..|
T Consensus 105 ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~G 149 (483)
T 3hjh_A 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 (483)
T ss_dssp EEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHTT
T ss_pred EEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHcC
Confidence 998885544432222 2355667777778888777654444
No 251
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=28.39 E-value=73 Score=27.30 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHHhCC-CccEEEEeCcHH-HHHHHHHHHHhCCCc-eEEecCC
Q 016133 136 LCSVLKANG-DTCAIVYCLERT-TCDELSAYLSAGGIS-CAAYHAG 178 (394)
Q Consensus 136 l~~~l~~~~-~~~~IVF~~s~~-~~~~l~~~L~~~g~~-~~~~h~~ 178 (394)
+...+...+ ..+++|||.+-. .+..++..|. .|+. +..+.||
T Consensus 51 ~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 51 LTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 344443322 568999999876 7888999999 9995 8889998
No 252
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=28.38 E-value=26 Score=27.25 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=27.3
Q ss_pred ccEEEEeCcHHH---------HHHHHHHHHhCCCceEEecCCC
Q 016133 146 TCAIVYCLERTT---------CDELSAYLSAGGISCAAYHAGL 179 (394)
Q Consensus 146 ~~~IVF~~s~~~---------~~~l~~~L~~~g~~~~~~h~~l 179 (394)
.+++|||.+-.. +..++..|...|+++..+.||+
T Consensus 84 ~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 84 KEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp SCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 479999987554 3567888999999999999985
No 253
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=28.33 E-value=67 Score=28.41 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=37.5
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCC----ceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 203 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 203 (394)
.+++||.++++.-++++.+.|.+.+. .+..++++..... -..+..+|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 44899999999999999999987643 4566777654322 1125678999986
No 254
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.27 E-value=1.7e+02 Score=22.43 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 43 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 43 ~~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
....+++|+|--- .. ...+..+..++...|+.|++++|+........
T Consensus 45 ~~~~dliild~~l--~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (155)
T 1qkk_A 45 ADFAGIVISDIRM--PG-----MDGLALFRKILALDPDLPMILVTGHGDIPMAV 91 (155)
T ss_dssp TTCCSEEEEESCC--SS-----SCHHHHHHHHHHHCTTSCEEEEECGGGHHHHH
T ss_pred hCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhCCCCCEEEEECCCChHHHH
Confidence 3458899998421 11 11234566677778899999999976655433
No 255
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.16 E-value=1.9e+02 Score=21.62 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHH--hCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~--~~~~~~~l~lSAT~~~~~~~ 96 (394)
..+++|++|=. +.. -...+.-+..++. ..++.|++++|+........
T Consensus 49 ~~~dlvi~D~~--l~~----~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~ 97 (140)
T 3lua_A 49 DSITLIIMDIA--FPV----EKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRH 97 (140)
T ss_dssp CCCSEEEECSC--SSS----HHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHH
T ss_pred CCCcEEEEeCC--CCC----CCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHH
Confidence 56889998821 110 0223455666777 67899999999987776554
No 256
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=28.16 E-value=16 Score=37.27 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=24.6
Q ss_pred cccEEEeCCceecChHHHHHH-HhhccCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tPe~v~tp~~~~~l-~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
..+|+++.-..+..|...... ........=.++||||||.+.+
T Consensus 175 ~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 175 DADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred cCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 357887666666666532221 1111111235899999999875
No 257
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=28.13 E-value=34 Score=32.43 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=27.8
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 247 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA-LLILDEVVT 247 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC-EEEEEETTT
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEcchh
Confidence 4788998875 22367788887666554443 799999997
No 258
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=27.98 E-value=1.3e+02 Score=23.43 Aligned_cols=45 Identities=13% Similarity=0.312 Sum_probs=30.7
Q ss_pred ccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 46 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
+++|++|=- +.+. ..+..+..++...++.+++++|+.........
T Consensus 84 ~dliilD~~--l~~~-----~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~ 128 (157)
T 3hzh_A 84 IDIVTLXIT--MPKM-----DGITCLSNIMEFDKNARVIMISALGKEQLVKD 128 (157)
T ss_dssp CCEEEECSS--CSSS-----CHHHHHHHHHHHCTTCCEEEEESCCCHHHHHH
T ss_pred CCEEEEecc--CCCc-----cHHHHHHHHHhhCCCCcEEEEeccCcHHHHHH
Confidence 688888832 2221 12455666788889999999999887766543
No 259
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.84 E-value=1.7e+02 Score=22.30 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
...++||+|--- .+. ..+..+..++...+..+++++|+........
T Consensus 50 ~~~dlii~D~~l--~~~-----~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~ 95 (153)
T 3cz5_A 50 TTPDIVVMDLTL--PGP-----GGIEATRHIRQWDGAARILIFTMHQGSAFAL 95 (153)
T ss_dssp TCCSEEEECSCC--SSS-----CHHHHHHHHHHHCTTCCEEEEESCCSHHHHH
T ss_pred CCCCEEEEecCC--CCC-----CHHHHHHHHHHhCCCCeEEEEECCCCHHHHH
Confidence 347899998422 111 1234566778888899999999987765543
No 260
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=27.80 E-value=1.4e+02 Score=22.53 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 44 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
..+++|++|-. +.+. ..+..+..++...|+.|++++|+........
T Consensus 48 ~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~ 93 (143)
T 3jte_A 48 NSIDVVITDMK--MPKL-----SGMDILREIKKITPHMAVIILTGHGDLDNAI 93 (143)
T ss_dssp TTCCEEEEESC--CSSS-----CHHHHHHHHHHHCTTCEEEEEECTTCHHHHH
T ss_pred CCCCEEEEeCC--CCCC-----cHHHHHHHHHHhCCCCeEEEEECCCCHHHHH
Confidence 45889999832 2221 1234566677788899999999987766544
No 261
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=27.74 E-value=46 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=29.2
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- ++.+++++..+.++.....+ ++|+||+|+
T Consensus 221 ~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi-llI~DEv~~ 265 (476)
T 3i5t_A 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI-LYISDEVVT 265 (476)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEeccc
Confidence 4678888775 35577788888776665554 799999997
No 262
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.71 E-value=3.2e+02 Score=24.22 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 130 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 130 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
....+.+..++...+ .+..|||.+-..+..+.+.|++.|+.
T Consensus 227 ~~~~~~~~~ll~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 227 ASGAEGVEMLLERGA-KFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC-CCeEEEECChHHHHHHHHHHHHcCCC
Confidence 345566677776543 46788898888888888899887754
No 263
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=27.50 E-value=34 Score=35.18 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=47.4
Q ss_pred CccEEEEeCcHHHHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEecc-----ccccccC-CCCcc
Q 016133 145 DTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMGID-RKDVR 215 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~GiD-~p~v~ 215 (394)
++++++-++++.-+.++++.++. .|+.+..++|+....++. .+..+|+|+|. .+..+.. +.+++
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 147 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-------LKNYDIIITTYEKLDSLWRHRPEWLNEVN 147 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-------GGGCSEEEECHHHHHHHHHHCCGGGGGEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-------cCCCCEEEEcHHHHHHHHhCChhHhhccC
Confidence 46899999999999999988843 388999999987654421 13678999996 2222322 45667
Q ss_pred EEE
Q 016133 216 LVC 218 (394)
Q Consensus 216 ~VI 218 (394)
+||
T Consensus 148 ~vI 150 (715)
T 2va8_A 148 YFV 150 (715)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 264
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=27.46 E-value=51 Score=31.90 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=29.2
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- ++.+++++..+.++.....+ ++|+||+|+
T Consensus 223 ~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~ 267 (472)
T 3hmu_A 223 RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDI-LLIADEVIC 267 (472)
T ss_dssp GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcccc
Confidence 4678888774 34477888888777665554 799999997
No 265
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=27.41 E-value=67 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=27.8
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+..++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 212 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-llI~DEv~~ 256 (433)
T 1z7d_A 212 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV-LFVADEVQT 256 (433)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4788998884 23456678887666554444 799999995
No 266
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=26.94 E-value=71 Score=29.53 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHhcCCCcccEEEeCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 7 IYEDLDSGKPSLRLLYVTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 7 i~~~l~~g~~~~~il~~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
+.+.+..+. --+++.+|. .+.++..+..+.+......+ ++|+||+|....+
T Consensus 172 l~~~l~~~~--~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-~li~Dea~~~~~~ 226 (407)
T 3nra_A 172 LEEAFKAGA--RVFLFSNPNNPAGVVYSAEEIGQIAALAARYGA-TVIADQLYSRLRY 226 (407)
T ss_dssp HHHHHHTTC--CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-EEEEECTTTTSBC
T ss_pred HHHHHhhCC--cEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCC-EEEEEcccccccc
Confidence 444454432 235567775 44455566666544333233 7899999986544
No 267
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.85 E-value=90 Score=29.16 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.6
Q ss_pred CccEEEEecCCccc
Q 016133 45 LLNLVAIDEAHCIS 58 (394)
Q Consensus 45 ~l~~iVvDEaH~l~ 58 (394)
...+|+|||+|.+.
T Consensus 207 ~~~il~iDEid~l~ 220 (389)
T 3vfd_A 207 QPSIIFIDQVDSLL 220 (389)
T ss_dssp SSEEEEEETGGGGC
T ss_pred CCeEEEEECchhhc
Confidence 34789999999885
No 268
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=26.77 E-value=92 Score=29.25 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=28.4
Q ss_pred cccEEEeCC--c----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 17 SLRLLYVTP--E----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 17 ~~~il~~tP--e----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
..+++|++| . .+.+...+..+.+......+ +||+||+|.-+.+
T Consensus 190 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~-~li~De~~~~~~~ 238 (425)
T 2r2n_A 190 TPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF-LIIEDDPYYFLQF 238 (425)
T ss_dssp CCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBS
T ss_pred CceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-EEEEECCcccccC
Confidence 478888765 2 55566666666555444344 7999999975544
No 269
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=26.76 E-value=57 Score=31.22 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.5
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+..++++..+.++.....+ +||+||+|.
T Consensus 227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 271 (451)
T 3oks_A 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDV-VFIADEVQT 271 (451)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCC-EEEEEeccc
Confidence 4788998885 23356778888776655544 799999996
No 270
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=26.72 E-value=84 Score=22.50 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=31.2
Q ss_pred cEEEEeC-------cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 016133 147 CAIVYCL-------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 191 (394)
Q Consensus 147 ~~IVF~~-------s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 191 (394)
+++||.. +++.+..+...|.+.|+....+.=..++..+....+..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 4566643 23444888889999999887777777777776665554
No 271
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=26.62 E-value=41 Score=33.28 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
+..++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 4568999999999999999999999999999999864
No 272
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=26.52 E-value=26 Score=31.57 Aligned_cols=102 Identities=10% Similarity=0.024 Sum_probs=63.8
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC----CCeEEEeccccccccCCCCccEEEE
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS----RKQVVVATVAFGMGIDRKDVRLVCH 219 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g----~~~iLVaT~~~~~GiD~p~v~~VI~ 219 (394)
+.+-+|||.++...++.|...|...|+.|. .|.+++.++-.+.+++|... ....+|+. .++.|.. ..|.-
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~-ilSHG~~----g~i~g 115 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACMPEHRDYDSFVCV-LVSRGGS----QSVYG 115 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTCGGGGGCSEEEEE-EEEEEET----TEECB
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhccccCCCCEEEEE-EEcCCCC----CeEEE
Confidence 456789999999999999999999999865 55689999999999999753 23333322 2444442 23333
Q ss_pred ecC---CCCHHHHHHHH-hhccc--CCCCceEEEEEec
Q 016133 220 FNI---PKSMEAFYQES-GRAGR--DQLPSKSLLYYGM 251 (394)
Q Consensus 220 ~~~---p~s~~~y~Qr~-GRagR--~g~~g~~i~l~~~ 251 (394)
.|- +-++.+.+... |.... .|+|...++--..
T Consensus 116 ~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACR 153 (272)
T 3h11_A 116 VDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYV 153 (272)
T ss_dssp TSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEE
T ss_pred EcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCC
Confidence 332 24566666554 22112 4556554444443
No 273
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=26.47 E-value=54 Score=31.41 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=28.6
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~ 265 (460)
T 3gju_A 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDV-LLVADEVVT 265 (460)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 4788888884 34466778888776655544 799999997
No 274
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=26.28 E-value=1.3e+02 Score=22.50 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=29.0
Q ss_pred CccEEEEecCCcccc---CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 016133 45 LLNLVAIDEAHCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 95 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~---~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~ 95 (394)
..+++|+|-.- .. .+. ..+..+..++...++.|++++|+.......
T Consensus 47 ~~dlvi~d~~~--~~~~~~~~---~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~ 95 (140)
T 2qr3_A 47 NPEVVLLDMNF--TSGINNGN---EGLFWLHEIKRQYRDLPVVLFTAYADIDLA 95 (140)
T ss_dssp CEEEEEEETTT--TC-----C---CHHHHHHHHHHHCTTCCEEEEEEGGGHHHH
T ss_pred CCCEEEEeCCc--CCCCCCCc---cHHHHHHHHHhhCcCCCEEEEECCCCHHHH
Confidence 48899998431 10 010 123456667777889999999997665443
No 275
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=26.09 E-value=46 Score=33.62 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=22.8
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeec
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTAT 89 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lSAT 89 (394)
.+++||||||+.+. .+ .+..+....| +.+++++.-.
T Consensus 262 ~~d~lIIDEAsml~------~~---~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEASMID------LP---MMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGGGCB------HH---HHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechhhCC------HH---HHHHHHHhCCCCCEEEEEcch
Confidence 57899999999654 22 2334455555 5677776543
No 276
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=26.02 E-value=1.3e+02 Score=25.23 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred CccEEEEeCc--------------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 016133 145 DTCAIVYCLE--------------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194 (394)
Q Consensus 145 ~~~~IVF~~s--------------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 194 (394)
.+.+|||.+. ...++.|...|...|+.|..+ -.++.++-.+.++.|...
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 4567888764 368999999999999997655 578999888888888753
No 277
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.02 E-value=66 Score=29.35 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=24.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
...++++||+|.+.. .....+..+....+....++++++-+..
T Consensus 134 ~~~vlilDE~~~L~~------~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 134 RYKCVIINEANSLTK------DAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCEEEEEECTTSSCH------HHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCeEEEEeCccccCH------HHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 456999999998542 2224454555555543445555554433
No 278
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=25.93 E-value=1.4e+02 Score=22.18 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=29.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lSAT~~~~~~~ 96 (394)
.+++|++|-. +.+. ..+..+..++.. .++.|++++|+........
T Consensus 52 ~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~ 97 (136)
T 3hdv_A 52 RIGLMITDLR--MQPE-----SGLDLIRTIRASERAALSIIVVSGDTDVEEAV 97 (136)
T ss_dssp TEEEEEECSC--CSSS-----CHHHHHHHHHTSTTTTCEEEEEESSCCHHHHH
T ss_pred CCcEEEEecc--CCCC-----CHHHHHHHHHhcCCCCCCEEEEeCCCChHHHH
Confidence 3788888832 2221 123455667766 6789999999988766544
No 279
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=25.74 E-value=2.3e+02 Score=26.72 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCccEEEEeC--cHH---HHHHHHHHHHhCCCceEEecCCC---CHHHHHHHHHHHhcCCCeEEEec
Q 016133 133 YADLCSVLKANGDTCAIVYCL--ERT---TCDELSAYLSAGGISCAAYHAGL---NDKARSSVLDDWISSRKQVVVAT 202 (394)
Q Consensus 133 ~~~l~~~l~~~~~~~~IVF~~--s~~---~~~~l~~~L~~~g~~~~~~h~~l---~~~~R~~~~~~f~~g~~~iLVaT 202 (394)
+..+...++..+..+++|.+. +.. ..+.+...|.+.|+.+..|.+.. +.+.-.+..+.+++...++|||-
T Consensus 31 l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 108 (407)
T 1vlj_A 31 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGV 108 (407)
T ss_dssp GGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 344555555554356777764 333 37888889988898887776633 34555667777888888888874
No 280
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=25.61 E-value=1.3e+02 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=28.6
Q ss_pred cccEEEeCC--c----eecChHHHHHHHhhc-cCCCccEEEEecCCcccc
Q 016133 17 SLRLLYVTP--E----LTATPGFMSKLKKIH-SRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 17 ~~~il~~tP--e----~v~tp~~~~~l~~~~-~~~~l~~iVvDEaH~l~~ 59 (394)
+.++++++| . .+.++..+..+.+.. ....+ +||+||++....
T Consensus 172 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~-~li~De~y~~~~ 220 (423)
T 3ez1_A 172 SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF-TIFADDAYRVHH 220 (423)
T ss_dssp TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC-EEEEECTTSSCB
T ss_pred CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC-EEEEECCcchhh
Confidence 578998766 3 555666677776665 44443 789999997543
No 281
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.60 E-value=80 Score=28.80 Aligned_cols=41 Identities=12% Similarity=0.011 Sum_probs=20.8
Q ss_pred CCCccEEEEecCCc-cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 43 RGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 43 ~~~l~~iVvDEaH~-l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
.+.-.++||||+|. +... ....|..+....|..-++++.+|
T Consensus 74 f~~~kvvii~~~~~kl~~~------~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA------INEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT------HHHHHHHHHTTCBTTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCChH------HHHHHHHHHhcCCCCeEEEEEcC
Confidence 44556777888776 5421 12334444454443444444444
No 282
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=25.40 E-value=1.1e+02 Score=25.05 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 016133 154 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194 (394)
Q Consensus 154 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 194 (394)
|...++.|...|...|+.| ..|-.++..+-.+.++.|...
T Consensus 53 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 53 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3678899999999999997 556778888888888888643
No 283
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=25.30 E-value=68 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=27.9
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+..++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 223 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~ 267 (439)
T 2oat_A 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV-LFIADEIQT 267 (439)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 4788988884 23456678888766655444 799999995
No 284
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=25.23 E-value=1.3e+02 Score=28.15 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=27.0
Q ss_pred ccEEEeCC--c----eecChHHHHHHHhhcc-CCCccEEEEecCCcc
Q 016133 18 LRLLYVTP--E----LTATPGFMSKLKKIHS-RGLLNLVAIDEAHCI 57 (394)
Q Consensus 18 ~~il~~tP--e----~v~tp~~~~~l~~~~~-~~~l~~iVvDEaH~l 57 (394)
.+++++.| . .+.+...+..+..... ...+ +||+||+|..
T Consensus 179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~-~li~De~y~~ 224 (422)
T 3d6k_A 179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDF-RIVWDNAYAL 224 (422)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTT
T ss_pred CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCC-EEEEECCccc
Confidence 68888544 3 5566777777776654 4444 7999999974
No 285
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=25.07 E-value=46 Score=32.07 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=28.1
Q ss_pred cccEEEeCC-c------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTP-E------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tP-e------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.++++.| - .+.+++++..+.++.....+ ++|+||++.
T Consensus 233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gi-llI~DEv~~ 278 (457)
T 3tfu_A 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV-LLIFDEIAT 278 (457)
T ss_dssp GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCC-EEEEEcCcc
Confidence 478888888 2 34477888888766554444 799999986
No 286
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=24.87 E-value=55 Score=30.70 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCccEEEEecCCcccc
Q 016133 44 GLLNLVAIDEAHCISS 59 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~ 59 (394)
+.-.++|+||||.+..
T Consensus 261 ~~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVD 276 (392)
T ss_dssp CTTCEEEETTGGGGCC
T ss_pred CccEEEEEecHHHHhC
Confidence 4467899999999885
No 287
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=24.83 E-value=1.1e+02 Score=27.88 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCcccEEEeCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 6 KIYEDLDSGKPSLRLLYVTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
.+.+.+.... .-+++.+|. .+.++..+..+.+......+ ++|+||+|..+.+
T Consensus 142 ~l~~~l~~~~--~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~ 197 (377)
T 3fdb_A 142 DVEKGFQAGA--RSILLCNPYNPLGMVFAPEWLNELCDLAHRYDA-RVLVDEIHAPLVF 197 (377)
T ss_dssp HHHHHHHTTC--CEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBS
T ss_pred HHHHHhccCC--CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEcccchhhc
Confidence 3444555442 245666664 44555666666554433333 6899999986544
No 288
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=24.79 E-value=1.6e+02 Score=24.24 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=38.8
Q ss_pred CCccEEEEeCc--------------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 016133 144 GDTCAIVYCLE--------------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 193 (394)
Q Consensus 144 ~~~~~IVF~~s--------------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 193 (394)
+.+.+|||.+. ...++.|...|...|+.| ..|-.++.++-.+.++.|.+
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 34567777654 358999999999999987 55678899998889999876
No 289
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=24.71 E-value=1.2e+02 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=29.4
Q ss_pred cccEEEeCC--c----eecChHHHHHHHhhc-cCCCccEEEEecCCccccC
Q 016133 17 SLRLLYVTP--E----LTATPGFMSKLKKIH-SRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 17 ~~~il~~tP--e----~v~tp~~~~~l~~~~-~~~~l~~iVvDEaH~l~~~ 60 (394)
..++++++| . .+.+...+..+.+.. ....+ +||+||+|..+.+
T Consensus 180 ~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~-~ii~De~y~~~~~ 229 (427)
T 3ppl_A 180 QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDF-RVVWDNAYAVHTL 229 (427)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-EEEEECTTTTCBS
T ss_pred CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCC-EEEEECCCccccc
Confidence 478998776 3 555667777776665 44443 7999999976433
No 290
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.67 E-value=1.1e+02 Score=22.69 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=28.3
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
..+++++|-- +.+. ..+.-+..++...|+.|++++|+........
T Consensus 46 ~~dlii~d~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 90 (134)
T 3f6c_A 46 KPDIVIIDVD--IPGV-----NGIQVLETLRKRQYSGIIIIVSAKNDHFYGK 90 (134)
T ss_dssp CCSEEEEETT--CSSS-----CHHHHHHHHHHTTCCSEEEEEECC---CTHH
T ss_pred CCCEEEEecC--CCCC-----ChHHHHHHHHhcCCCCeEEEEeCCCChHHHH
Confidence 3789999832 2221 1235566688888899999999987765544
No 291
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.56 E-value=1.8e+02 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=30.0
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
..+++++|-- +... ..+..+..++...|+.|++++|+.........
T Consensus 47 ~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 92 (124)
T 1srr_A 47 RPDLVLLDMK--IPGM-----DGIEILKRMKVIDENIRVIIMTAYGELDMIQE 92 (124)
T ss_dssp CCSEEEEESC--CTTC-----CHHHHHHHHHHHCTTCEEEEEESSCCHHHHHH
T ss_pred CCCEEEEecC--CCCC-----CHHHHHHHHHHhCCCCCEEEEEccCchHHHHH
Confidence 3789999842 2221 11344556777778999999999877655443
No 292
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=24.55 E-value=47 Score=31.60 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=27.5
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
.+.++++.|- ++.+++++..+.++.....+ +||+||+|.
T Consensus 219 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~-~li~Dev~~ 263 (449)
T 3a8u_X 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNI-LLVFDEVIT 263 (449)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCC-EEEEecccc
Confidence 4788888885 23456778777665544443 799999996
No 293
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.51 E-value=80 Score=28.38 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=22.7
Q ss_pred ccEEEEecCCccccCCCC-CHHHHHHHHHHHHhCCCCCEEEEeec
Q 016133 46 LNLVAIDEAHCISSWGHD-FRPSYRKLSSLRNYLPDVPILALTAT 89 (394)
Q Consensus 46 l~~iVvDEaH~l~~~g~~-fr~~~~~l~~l~~~~~~~~~l~lSAT 89 (394)
--+|||||+|.+.+|+.. .......|..+....++..+ ++|++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-il~g~ 172 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKI-ILTGS 172 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEE-EEEES
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEE-EEECC
Confidence 347999999998764211 12223344445444444444 34443
No 294
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=24.38 E-value=1e+02 Score=28.84 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=25.0
Q ss_pred ccEEE-eCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 18 LRLLY-VTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 18 ~~il~-~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
.++++ .+|. .+.++..+..+.+......+ +||+||+|....+
T Consensus 183 ~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~-~li~De~~~~~~~ 229 (437)
T 3g0t_A 183 FCSIIYSNPNNPTWQCMTDEELRIIGELATKHDV-IVIEDLAYFGMDF 229 (437)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTTTCCT
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-EEEEEcchhhccc
Confidence 56554 5775 34455556666544433333 7999999975543
No 295
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.29 E-value=1e+02 Score=23.13 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=30.7
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 97 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~~ 97 (394)
..++|++|-. +.+. ..+..+..++...+..|++++|+.........
T Consensus 51 ~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 96 (137)
T 3hdg_A 51 APDVIITDIR--MPKL-----GGLEMLDRIKAGGAKPYVIVISAFSEMKYFIK 96 (137)
T ss_dssp CCSEEEECSS--CSSS-----CHHHHHHHHHHTTCCCEEEECCCCCCHHHHHH
T ss_pred CCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCCCcEEEEecCcChHHHHH
Confidence 4788998832 2221 12345666777788999999999887665543
No 296
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.27 E-value=3.8e+02 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhCCCccEEEEeCcHHHHHHHHHHHHhCCCc
Q 016133 129 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 171 (394)
Q Consensus 129 ~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l~~~L~~~g~~ 171 (394)
.....+.+..+|...+ ....|||.+-..+..+...|++.|+.
T Consensus 189 ~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 189 RERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 3455677778887764 46789999999999999999998865
No 297
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=24.11 E-value=1.8e+02 Score=22.18 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=29.7
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
.+++|++|=. +.+. ..+..+..++...|+.+++++|+........
T Consensus 48 ~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 92 (151)
T 3kcn_A 48 PFSVIMVDMR--MPGM-----EGTEVIQKARLISPNSVYLMLTGNQDLTTAM 92 (151)
T ss_dssp CCSEEEEESC--CSSS-----CHHHHHHHHHHHCSSCEEEEEECGGGHHHHH
T ss_pred CCCEEEEeCC--CCCC-----cHHHHHHHHHhcCCCcEEEEEECCCCHHHHH
Confidence 3689999832 2221 1234566677788899999999987655443
No 298
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=24.01 E-value=83 Score=29.95 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=35.1
Q ss_pred HHHHHHHh---CCCccEEEEeCcHHHHHHHHHHHHhCCC-ceEEecCCC
Q 016133 135 DLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGL 179 (394)
Q Consensus 135 ~l~~~l~~---~~~~~~IVF~~s~~~~~~l~~~L~~~g~-~~~~~h~~l 179 (394)
.|...+.. .+..++|+||.+-..+...+..|...|+ ++..|.||+
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45555532 3456899999998888888999999998 588899985
No 299
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.86 E-value=72 Score=29.13 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=26.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 93 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~ 93 (394)
...++|+||+|.+.. .....|..+....+....+.++++.+..
T Consensus 110 ~~~viiiDe~~~l~~------~~~~~L~~~le~~~~~~~~il~~n~~~~ 152 (340)
T 1sxj_C 110 GFKLIILDEADAMTN------AAQNALRRVIERYTKNTRFCVLANYAHK 152 (340)
T ss_dssp SCEEEEETTGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEeCCCCCCH------HHHHHHHHHHhcCCCCeEEEEEecCccc
Confidence 367899999998753 2234455566666654455555554433
No 300
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=23.73 E-value=38 Score=31.90 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=32.0
Q ss_pred CccEEEEeCcHHHHHHHHHHHHhCCCc-eEEecCCCCHH
Q 016133 145 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDK 182 (394)
Q Consensus 145 ~~~~IVF~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~ 182 (394)
..++|+||.+-..+...+..|...|+. +..|.|++..-
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 284 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEY 284 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHH
Confidence 567999999988888888899999985 88999987554
No 301
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.24 E-value=78 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.4
Q ss_pred HHHHHHhhccCCCccEEEEecCCcccc
Q 016133 33 FMSKLKKIHSRGLLNLVAIDEAHCISS 59 (394)
Q Consensus 33 ~~~~l~~~~~~~~l~~iVvDEaH~l~~ 59 (394)
....+.++.....+++||||..+.+..
T Consensus 298 l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 298 VRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 334444444344699999999998864
No 302
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=23.11 E-value=2.2e+02 Score=20.64 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=37.7
Q ss_pred CccEEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH-hcCCCeEEE
Q 016133 145 DTCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW-ISSRKQVVV 200 (394)
Q Consensus 145 ~~~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~iLV 200 (394)
..+++||. ++...|..+...|.+.++....+.-...+..+....+.. ....++.++
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~if 72 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIF 72 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEE
Confidence 34677885 667889999999999998887777777766655544332 233444443
No 303
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=23.11 E-value=60 Score=29.14 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCCccEEEEeCc--H-HHHHHHHHHHHhCCC-ceEEecCCCC
Q 016133 143 NGDTCAIVYCLE--R-TTCDELSAYLSAGGI-SCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~~s--~-~~~~~l~~~L~~~g~-~~~~~h~~l~ 180 (394)
.+..++||||.+ - ..+..++..|...|+ ++..+.||+.
T Consensus 90 ~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 90 SNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp CTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 345689999987 3 347788889999998 5888999853
No 304
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.04 E-value=78 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=20.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEE
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 86 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~l 86 (394)
..++|+||||+.+.. ..+..+..+... +.++++.
T Consensus 81 ~~dvViIDEaqfl~~------~~v~~l~~l~~~--~~~Vi~~ 114 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDD------EIVEIVNKIAES--GRRVICA 114 (191)
T ss_dssp TCSEEEECSGGGSCT------HHHHHHHHHHHT--TCEEEEE
T ss_pred cCCEEEEECCCCCCH------HHHHHHHHHHhC--CCEEEEE
Confidence 479999999997531 123344444332 6666654
No 305
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=22.94 E-value=51 Score=31.60 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=27.7
Q ss_pred cccEEEeCCc------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~-llI~DEv~~ 269 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV-VFIADEVQT 269 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4788888885 23366778877666554444 799999996
No 306
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=22.93 E-value=94 Score=28.87 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCcccEEE-eCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccCC
Q 016133 6 KIYEDLDSGKPSLRLLY-VTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~-~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g 61 (394)
.+.+.+....+...+++ .+|. .+.+...+..+.+.....++ +||+||+|.-+.++
T Consensus 172 ~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-~li~De~y~~~~~~ 231 (409)
T 4eu1_A 172 GMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNH-IPFVDMAYQGFATG 231 (409)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTTTTS
T ss_pred HHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCc-EEEEeccccccccC
Confidence 34455543221234444 4665 55566666666554443333 79999998655443
No 307
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.63 E-value=1e+02 Score=27.87 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=24.5
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 94 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~ 94 (394)
...+|++||+|.+.. .....|..+....+....++++++.+...
T Consensus 133 ~~~vliiDE~~~l~~------~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDEADSMTA------DAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETTGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEECCCccCH------HHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 456999999998753 12234444555544333444555544433
No 308
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.56 E-value=70 Score=25.46 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=32.2
Q ss_pred HHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 161 LSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 161 l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
.+..|++ .|+++..+.++- .+-+..+.+..++|+++.+|-|..
T Consensus 40 Ta~~L~e~~Gl~v~~v~k~~-~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 40 TGRRIEEATGLTVEKLLSGP-LGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHHHHCCCCEECSCGG-GTHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHhhCceEEEEEecC-CCCcchHHHHHHCCCccEEEEccC
Confidence 4566666 799998887532 134678999999999998888764
No 309
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=22.55 E-value=53 Score=32.71 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=33.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCH
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 181 (394)
+..++++||.+-..+...+..|.+.|+.+..+.||+..
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~ 577 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKL 577 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHH
Confidence 45679999999999999999999999998888898643
No 310
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=22.46 E-value=62 Score=32.04 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=32.0
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHhCCCceEEecC-CCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA-GLN 180 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~-~l~ 180 (394)
++.+++|||.+-..+...+..|...|+.+..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3568999999988888899999999999988999 864
No 311
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=22.37 E-value=1.2e+02 Score=27.91 Aligned_cols=55 Identities=15% Similarity=-0.003 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCcccEEEe-CCc----eecChHHHHHHHhhccCCCccEEEEecCCccccCC
Q 016133 6 KIYEDLDSGKPSLRLLYV-TPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 61 (394)
Q Consensus 6 ~i~~~l~~g~~~~~il~~-tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~g 61 (394)
.+.+.+....+...++++ +|. .+.++..+..+.+......+ +||+||+|.-+.++
T Consensus 162 ~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~~ 221 (397)
T 3fsl_A 162 DLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-IPFLDIAYQGFGAG 221 (397)
T ss_dssp HHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEEESCTTSSSC
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE-EEEEecCchhhccC
Confidence 344555543334556553 444 55666666666554433333 79999999765544
No 312
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=22.32 E-value=83 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=31.6
Q ss_pred HHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 161 LSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 161 l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
.+..|++ .|+++..+.++ +..-+..+....++|+++.+|-|..
T Consensus 48 Ta~~L~e~~Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 48 TGNLISRATGMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HHHHHHHHHCCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHhCceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 3556766 79999888753 2224678999999999888877753
No 313
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=22.14 E-value=1.3e+02 Score=26.53 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=11.2
Q ss_pred ccEEEEecCCccc
Q 016133 46 LNLVAIDEAHCIS 58 (394)
Q Consensus 46 l~~iVvDEaH~l~ 58 (394)
-++|+|||+|.+.
T Consensus 131 ~~vl~iDEid~l~ 143 (309)
T 3syl_A 131 GGVLFIDEAYYLY 143 (309)
T ss_dssp TSEEEEETGGGSC
T ss_pred CCEEEEEChhhhc
Confidence 4689999999886
No 314
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=21.98 E-value=61 Score=30.04 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=26.7
Q ss_pred cccEEEeCCce----ec--ChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPEL----TA--TPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe~----v~--tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
+.++++++|.- +. ++..+..+.++.....+ +||+||+|.
T Consensus 183 ~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~-~li~De~~~ 227 (406)
T 4adb_A 183 STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNA-LLIFDEVQT 227 (406)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 47899999861 11 55667777665544443 799999996
No 315
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=21.68 E-value=1.7e+02 Score=26.78 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=61.0
Q ss_pred CccEEEEeCc-------------HHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC---CeEEEeccccccc
Q 016133 145 DTCAIVYCLE-------------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMG 208 (394)
Q Consensus 145 ~~~~IVF~~s-------------~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~---~~iLVaT~~~~~G 208 (394)
.+-+||+.|. ...++.|++.|+..|+.|. .+-+++..+-.+.+++|.... ..++|+. .++-|
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~-ilSHG 137 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEMDHSDADCLLVA-VLTAG 137 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSSCGGGBSCEEEE-EEEEE
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHhccCCCCEEEEE-EeCCC
Confidence 4457777654 7889999999999999975 556899999999999997542 2222211 23344
Q ss_pred cCCCCccEEEEecCCCCHHHHHHHH-hhc--ccCCCCceEEEEEe
Q 016133 209 IDRKDVRLVCHFNIPKSMEAFYQES-GRA--GRDQLPSKSLLYYG 250 (394)
Q Consensus 209 iD~p~v~~VI~~~~p~s~~~y~Qr~-GRa--gR~g~~g~~i~l~~ 250 (394)
.. ..|+-.|.+.++...++.. |.- .-.|++...++-..
T Consensus 138 ~~----g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQAC 178 (310)
T 2nn3_C 138 EL----GMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQAC 178 (310)
T ss_dssp ET----TEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEE
T ss_pred CC----CEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecc
Confidence 31 3455445455666666554 221 12455554444433
No 316
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.67 E-value=1.2e+02 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=25.3
Q ss_pred ccEEE-eCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 18 LRLLY-VTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 18 ~~il~-~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
.++++ .+|. .+.++..+..+.+......+ +||+||+|....+
T Consensus 163 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-~li~De~~~~~~~ 209 (390)
T 1d2f_A 163 CKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV-RVISDEIHMDMVW 209 (390)
T ss_dssp EEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTC-EEEEECTTTTCBC
T ss_pred CeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEcccccccc
Confidence 56666 4554 44455566666554433333 7999999976543
No 317
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=21.65 E-value=61 Score=25.98 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCccEEEEeC-cHHHHHHHHHHH--------HhCCC-ceEEecCCCCH
Q 016133 144 GDTCAIVYCL-ERTTCDELSAYL--------SAGGI-SCAAYHAGLND 181 (394)
Q Consensus 144 ~~~~~IVF~~-s~~~~~~l~~~L--------~~~g~-~~~~~h~~l~~ 181 (394)
+..++||||. +-......+..| +..|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 4557899998 544444444444 34687 68889999753
No 318
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.63 E-value=2e+02 Score=22.35 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=29.4
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHh--CCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~--~~~~~~l~lSAT~~~~~~~ 96 (394)
.+++|++| -.+.... -+.-+..++.. .+++|++++||....+...
T Consensus 57 ~~DlillD--~~MP~md-----G~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~ 103 (134)
T 3to5_A 57 DFDFVVTD--WNMPGMQ-----GIDLLKNIRADEELKHLPVLMITAEAKREQII 103 (134)
T ss_dssp CCSEEEEE--SCCSSSC-----HHHHHHHHHHSTTTTTCCEEEEESSCCHHHHH
T ss_pred CCCEEEEc--CCCCCCC-----HHHHHHHHHhCCCCCCCeEEEEECCCCHHHHH
Confidence 47889988 3344321 13455566643 4689999999988776554
No 319
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=21.46 E-value=1.4e+02 Score=26.41 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=46.1
Q ss_pred cEEEEeCcHHHHHHHHHHHHhCCCceEEecCC-C-CHHHHHHHHHHHhcCCCeEEEeccccccccC
Q 016133 147 CAIVYCLERTTCDELSAYLSAGGISCAAYHAG-L-NDKARSSVLDDWISSRKQVVVATVAFGMGID 210 (394)
Q Consensus 147 ~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~-l-~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 210 (394)
-++|+|.+...+.+....+-+.|.++.....+ + +++.++.+.+.-+.|..++.+.+-+++ |+|
T Consensus 62 D~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~-GlD 126 (253)
T 1j5p_A 62 STVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIG-GLD 126 (253)
T ss_dssp CEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCC-CHH
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCccc-chh
Confidence 48999999998888667776778887766654 2 566677777777888888877775544 344
No 320
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.41 E-value=1.7e+02 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.6
Q ss_pred CCccEEEEecCCcccc
Q 016133 44 GLLNLVAIDEAHCISS 59 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~ 59 (394)
....+|+|||+|.+..
T Consensus 104 ~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCG 119 (322)
T ss_dssp TSSEEEEEETTTGGGC
T ss_pred cCCcEEEeecHHHhcc
Confidence 3467899999999853
No 321
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=21.39 E-value=84 Score=29.52 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=28.6
Q ss_pred CCCccEEEEe-CcH-HHHHHHHHHHHhCCCceEEecCCCC
Q 016133 143 NGDTCAIVYC-LER-TTCDELSAYLSAGGISCAAYHAGLN 180 (394)
Q Consensus 143 ~~~~~~IVF~-~s~-~~~~~l~~~L~~~g~~~~~~h~~l~ 180 (394)
.+..+++||| .+- ..+..++..|+..|+++..+.||+.
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 3456899999 433 3344778889999998889999974
No 322
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=21.34 E-value=46 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCccEEEEeCcHHHHHHHHHHHHh-CCCc-eEEecCCC
Q 016133 144 GDTCAIVYCLERTTCDELSAYLSA-GGIS-CAAYHAGL 179 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~~~L~~-~g~~-~~~~h~~l 179 (394)
+..++|+||.+-..+...+..|.+ .|+. +..|.||+
T Consensus 258 ~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 258 PDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp TTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 456899999999999999999987 8985 88899985
No 323
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=21.15 E-value=72 Score=27.56 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.0
Q ss_pred CccEEEEecCCccc
Q 016133 45 LLNLVAIDEAHCIS 58 (394)
Q Consensus 45 ~l~~iVvDEaH~l~ 58 (394)
.+++|+||||+.+.
T Consensus 101 ~~dvViIDEaQF~~ 114 (214)
T 2j9r_A 101 EMDVIAIDEVQFFD 114 (214)
T ss_dssp SCCEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 48899999999864
No 324
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.14 E-value=63 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=25.0
Q ss_pred ccEEEeCCceecChHHHHHHHhhccCCCccEEEEecCCcc
Q 016133 18 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 57 (394)
Q Consensus 18 ~~il~~tPe~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l 57 (394)
.+++++++ ..+++..+..+.++.....+ +||+||||..
T Consensus 123 ~~~v~~~~-~~G~~~~l~~i~~l~~~~~~-~li~Dea~~~ 160 (394)
T 1o69_A 123 PKALILTH-LYGNAAKMDEIVEICKENDI-VLIEDAAEAL 160 (394)
T ss_dssp CCEEEEEC-GGGCCCCHHHHHHHHHHTTC-EEEEECTTCT
T ss_pred ceEEEEEC-CCCChhhHHHHHHHHHHcCC-EEEEECcCcc
Confidence 67888777 45566656666554443333 6899999974
No 325
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.02 E-value=99 Score=30.29 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=27.1
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 91 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~ 91 (394)
.-.+|+|||+|.+...... ....|..+... .+.++++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~---~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRG---GVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTT---HHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHH---HHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 4568999999998753321 22334444443 4677888887754
No 326
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.00 E-value=1.9e+02 Score=23.10 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 016133 154 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 194 (394)
Q Consensus 154 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 194 (394)
|...++.+.+.|...|+.|. .|..++.++-.+.++.|.+.
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 45688999999999999965 55578888888889998753
No 327
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=20.93 E-value=1.3e+02 Score=26.11 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCccEEEEecCCccccCC---CCCHHH-HHHHHHHHHhC--CCCCEEEEeecCChhHH
Q 016133 44 GLLNLVAIDEAHCISSWG---HDFRPS-YRKLSSLRNYL--PDVPILALTATAAPKVQ 95 (394)
Q Consensus 44 ~~l~~iVvDEaH~l~~~g---~~fr~~-~~~l~~l~~~~--~~~~~l~lSAT~~~~~~ 95 (394)
....+|+|||+|.+.... ..+... +..|..+.... ++.+++++.+|-.+...
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 447899999999984321 112222 22333333322 24567777777666543
No 328
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=20.92 E-value=2e+02 Score=21.26 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=29.2
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~~~~~~~~l~lSAT~~~~~~~ 96 (394)
..+++++|- + +.+. ..+..+..++...++.|++++|+........
T Consensus 47 ~~dlvl~D~-~-l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (132)
T 3crn_A 47 FFNLALFXI-K-LPDM-----EGTELLEKAHKLRPGMKKIMVTGYASLENSV 91 (132)
T ss_dssp CCSEEEECS-B-CSSS-----BHHHHHHHHHHHCTTSEEEEEESCCCHHHHH
T ss_pred CCCEEEEec-C-CCCC-----chHHHHHHHHhhCCCCcEEEEeccccHHHHH
Confidence 478999983 2 2221 1134455677777899999999987765443
No 329
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=20.91 E-value=1.4e+02 Score=27.50 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHhcCCCcccEEE-eCCc----eecChHHHHHHHhhccCCCccEEEEecCCccccC
Q 016133 7 IYEDLDSGKPSLRLLY-VTPE----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 60 (394)
Q Consensus 7 i~~~l~~g~~~~~il~-~tPe----~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~l~~~ 60 (394)
+.+.+... +.++++ .+|. .+.++..+..+.+......+ +||+||+|....+
T Consensus 156 l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-~li~De~~~~~~~ 211 (399)
T 1c7n_A 156 LEKLSKDK--NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-MLWSDEIHFDLIM 211 (399)
T ss_dssp HHHHHTCT--TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-EEEEECTTTTCBC
T ss_pred HHHHhccC--CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCC-EEEEEcccccccc
Confidence 34444423 356666 4443 44555667766555443333 7999999986543
No 330
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.90 E-value=1.6e+02 Score=26.56 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=26.0
Q ss_pred CccEEEEecCCccccCC-----CCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhH
Q 016133 45 LLNLVAIDEAHCISSWG-----HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKV 94 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g-----~~fr~~~~~l~~l~~~~--~~~~~l~lSAT~~~~~ 94 (394)
...+|+|||+|.+.... ...+.....+....... ....++++.||-.+..
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 35789999999986421 01122222232222222 3456777777755543
No 331
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.64 E-value=4e+02 Score=23.26 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=42.8
Q ss_pred ccEEEEeCcHHHHHHHHHHHHhCCCceEEecCCCCHHH-HHHHHHHHh--cCCCeEEEecc
Q 016133 146 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA-RSSVLDDWI--SSRKQVVVATV 203 (394)
Q Consensus 146 ~~~IVF~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~-R~~~~~~f~--~g~~~iLVaT~ 203 (394)
-++++.-.+.+..+++++.|.+.|.++..+..+++..+ -...++... -|.+++||..-
T Consensus 34 a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 34 ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 35666666778888999999999999999999987654 334444443 37899999864
No 332
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=20.34 E-value=60 Score=30.56 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=26.8
Q ss_pred cccEEEeCCc-------eecChHHHHHHHhhccCCCccEEEEecCCc
Q 016133 17 SLRLLYVTPE-------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 56 (394)
Q Consensus 17 ~~~il~~tPe-------~v~tp~~~~~l~~~~~~~~l~~iVvDEaH~ 56 (394)
...++++.|- .+.+++++..+.++.....+ +||+||+|.
T Consensus 190 ~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~ 235 (430)
T 3i4j_A 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGI-IFIADEVMS 235 (430)
T ss_dssp GEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred CEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCC-EEEEechhh
Confidence 4678888884 34456667777665544334 799999996
No 333
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=20.23 E-value=1.3e+02 Score=29.80 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCccEEEEeCcHHHHHHHH-HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEeccc
Q 016133 144 GDTCAIVYCLERTTCDELS-AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 204 (394)
Q Consensus 144 ~~~~~IVF~~s~~~~~~l~-~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 204 (394)
...++||.++++.-++++. +.+...+..+..++++. ..+..+|+|+|.-
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~~ 283 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIYQ 283 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEGG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEhh
Confidence 5678999999999998888 77777776666666432 2456789999864
No 334
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.20 E-value=2.3e+02 Score=21.23 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred CccEEEEecCCccccCCCCCHHHHHHHHHHHH--hCCCCCEEEEeecCChhHHH
Q 016133 45 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALTATAAPKVQK 96 (394)
Q Consensus 45 ~l~~iVvDEaH~l~~~g~~fr~~~~~l~~l~~--~~~~~~~l~lSAT~~~~~~~ 96 (394)
..++||+|--- .+. ..+..+..++. ..++.|++++|+........
T Consensus 52 ~~dlii~d~~l--~~~-----~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~ 98 (147)
T 2zay_A 52 HPHLIITEANM--PKI-----SGMDLFNSLKKNPQTASIPVIALSGRATAKEEA 98 (147)
T ss_dssp CCSEEEEESCC--SSS-----CHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHH
T ss_pred CCCEEEEcCCC--CCC-----CHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHH
Confidence 47889998321 111 12345566776 56789999999987766544
No 335
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=20.12 E-value=68 Score=28.98 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=12.0
Q ss_pred ccEEEEecCCcccc
Q 016133 46 LNLVAIDEAHCISS 59 (394)
Q Consensus 46 l~~iVvDEaH~l~~ 59 (394)
.++|+|||+|.+..
T Consensus 99 ~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 99 VDLLLLDDVQFLSG 112 (324)
T ss_dssp CSEEEEECGGGGTT
T ss_pred CCEEEEcCcccccC
Confidence 67999999999863
No 336
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=20.11 E-value=2.4e+02 Score=20.32 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=33.4
Q ss_pred cEEEEe-CcHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHH
Q 016133 147 CAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 189 (394)
Q Consensus 147 ~~IVF~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 189 (394)
++.||. ++.-.|..+..+|.+.|++...+.=..+++.+..+.+
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~ 48 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGS 48 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHH
Confidence 577886 4557788889999999999888887777777766544
Done!