BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016134
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204
+ G R L W G + L GH V + L ++ SGSRD T W+IE+
Sbjct: 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 205 AEFS-LDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGR 245
L G V V + + +GA D GHT V L
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 289
Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATG 304
+ SGS+D +IRVW+++T + TL H + D L+S + D T+K+W TG
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ +K + V L K +I + +D TV L++L +
Sbjct: 350 QCLQTLQGPNKHQSAVTCL-----QFNKNFVITSSDDGTVKLWDLKT 391
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 238 VTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTI 297
+TCL +R+ SGS DNT++VW T + + TL HT S D ++S S D T+
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 181
Query: 298 KVWFATGRGNLEAAYTH 314
KVW A + Y H
Sbjct: 182 KVWNAETGECIHTLYGH 198
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
GHT V + + + SGS D T++VW +T E + TL HT + ++ ++S S
Sbjct: 157 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 216
Query: 293 LDHTIKVW 300
D T++VW
Sbjct: 217 RDATLRVW 224
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVAN 223
+ L GH+ SG + L+ + L SG+ D T W+I++ +L GP
Sbjct: 312 IHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP----------- 358
Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL 271
+ H VTCL ++ + + S D T+++W+L T E + L
Sbjct: 359 --------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI-ESSAEFSLDGPVGEVYSMVVANEML 226
L GH +V ++ + + SGS D T W++ + + L G +YS + +E
Sbjct: 266 LRGHMASVRTVSG--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-- 321
Query: 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQ 286
R R S SMD TIR+W+L+ E + TL HT L D+
Sbjct: 322 ------------------RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK 363
Query: 287 FLLSCSLDHTIKVW--------FATGRGNLEAAYTHKEDNGVLALGGLN 327
FL+S + D +I+ W F+ NL A T + +L G N
Sbjct: 364 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 412
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW 199
G V G R + W +G EGH V + + + + +GSRD T W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNT 256
+ + G + Y +V F G GH V ++ + + SGS DNT
Sbjct: 233 KLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 257 IRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
+ VW++ ++ + L+ HTD S + +D + +S S+D TI++W N E YT
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIW---DLENGELMYT 347
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
+ ++ L L+D L+ A D ++ ++ + R FS H + I
Sbjct: 348 LQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITT-- 398
Query: 374 LFFTGD 379
F+ D
Sbjct: 399 -FYVSD 403
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 233 GH-TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL-LCWDQFLLS 290
GH T +TCL + + +G+ D IRV++ + ++ L+ H +L L+S
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
S D T++VW +G + + N + + + ++ DNT+H+++LP
Sbjct: 179 GSTDRTVRVW-DIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
GHT V CL + +GS D+T+RVW+++T E + TL H +A + L + +++CS
Sbjct: 171 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 230
Query: 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
D +I VW ++ + G A + D D K ++ A D T+ ++ S
Sbjct: 231 KDRSIAVWDMASPTDIT---LRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWN-TST 285
Query: 353 MERGRIFSKHEVRVIEIG-PDKLFFTGDGAGMLGVWKL 389
E R + H+ + + D+L +G + +W +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLD 294
++ V CL ++ SG DNTI++W+ +TLE L HT + + L ++ +++ S D
Sbjct: 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL--PSF 352
T++VW L H E VL L N +++ D ++ ++++ P+
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCE--AVLHLRFNNG-----MMVTCSKDRSIAVWDMASPTD 245
Query: 353 MERGRIFSKHE--VRVIEIGPDKLFFTGDGAGMLGVW 387
+ R+ H V V++ DK + G + VW
Sbjct: 246 ITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVW 281
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 35/194 (18%)
Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVAN 223
+T+ L GH AV+ + + SG R WN +
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE------------------ 287
Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
F +GH R + CL + SGS DNTIR+W+++ + L H + +
Sbjct: 288 ---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 284 WDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV--------L 335
++ ++S + D IKVW +L AA + G L L L + G+ +
Sbjct: 345 DNKRIVSGAYDGKIKVW------DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI 398
Query: 336 ICACNDNTVHLYEL 349
+ + +D+T+ +++
Sbjct: 399 VSSSHDDTILIWDF 412
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%)
Query: 216 VYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
V+ M ++ GH V + + S S D TI+VW T E V TLN H
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296
Query: 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE 316
L D+ ++S S D+TI++W L H+E
Sbjct: 297 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 202 ESSAEFSLDGPVGEVYSMVVANEML----FAGAQDGHTRPVTCLAVG--RSRLCSGSMDN 255
E+ EF+ GP+G+ E + A GH PVT + S + S S D
Sbjct: 74 EAKEEFTSGGPLGQKRD---PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDA 130
Query: 256 TIRVWELDTLEPVMTLNDHTDA--PMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT 313
TI+VW+ +T + TL HTD+ +S + L SCS D TIK+W G + +
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
H D+ V ++ + P+G + + A D T+ ++E+ +
Sbjct: 191 H--DHNVSSVSIM--PNGDHI-VSASRDKTIKMWEVQT 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 52/234 (22%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVG--EVYSM 219
+G + + GH+ VS +++ D + S SRD T E + + G E M
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 220 VVANE--MLFAGAQDGHTRPVTCLAVGRSR------------------------------ 247
V N+ L A + T V +A +
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 248 -----------LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD--QFLLSCSLD 294
L SGS D TI++W++ T +MTL H + +L +F+LSC+ D
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
T++VW + ++ H+ + L+ P ++ D TV ++E
Sbjct: 360 KTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 23/146 (15%)
Query: 157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEV 216
SW + +++ G E SG P L SGSRD T + S L VG
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPF----LLSGSRDKTIKMWDVSTGMCLMTLVG-- 336
Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
D R V + G+ + S + D T+RVW+ + TLN H
Sbjct: 337 --------------HDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHEH 381
Query: 277 APMSLLCWDQ--FLLSCSLDHTIKVW 300
SL ++++ S+D T+KVW
Sbjct: 382 FVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 33/169 (19%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI-ESSAEFSLDGPVGEVYSMVVANEML 226
L GH +V ++ + + SGS D T W++ + + L G +YS + +E
Sbjct: 266 LRGHXASVRTVSG--HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE-- 321
Query: 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQ 286
R R S S D TIR+W+L+ E TL HT L D+
Sbjct: 322 ------------------RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK 363
Query: 287 FLLSCSLDHTIKVW--------FATGRGNLEAAYTHKEDNGVLALGGLN 327
FL+S + D +I+ W F+ NL A T + +L G N
Sbjct: 364 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 412
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 26/252 (10%)
Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW 199
G V G R + W +G EGH V + + + + +GSRD T W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNT 256
+ + G + Y +V F G GH V ++ + + SGS DNT
Sbjct: 233 KLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 257 IRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
+ VW++ + + L+ HTD S + +D + +S S D TI++W N E YT
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISASXDTTIRIW---DLENGELXYT 347
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
+ ++ L L+D L+ A D ++ ++ + R FS H + I
Sbjct: 348 LQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITT-- 398
Query: 374 LFFTGDGAGMLG 385
F+ D + G
Sbjct: 399 -FYVSDNILVSG 409
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 233 GH-TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL-LCWDQFLLS 290
GH T +TCL + + +G+ D IRV++ + ++ L+ H +L L+S
Sbjct: 119 GHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
S D T++VW +G + + N + + + ++ DNT+H+++LP
Sbjct: 179 GSTDRTVRVW-DIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 298 NIIASAALENDKTIKLW 314
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 65
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 122
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 123 PQSNLIVSGSFDESVRIW 140
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 239
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 240 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 268
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 292 NIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 59
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 116
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 117 PQSNLIVSGSFDESVRIW 134
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 256
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 257 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 285
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 309 NIIASAALENDKTIKLW 325
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 76
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 133
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 134 PQSNLIVSGSFDESVRIW 151
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 239
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 240 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 268
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 292 NIIASAALENDKTIKLW 308
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 59
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 116
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 117 PQSNLIVSGSFDESVRIW 134
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK++
Sbjct: 295 NIIASAALENDKTIKLF 311
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 62
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 119
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 120 PQSNLIVSGSFDESVRIW 137
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 235
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 236 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 264
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 288 NIIASAALENDKTIKLW 304
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 55
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 112
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 113 PQSNLIVSGSFDESVRIW 130
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 238
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 239 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 267
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 291 NIIASAALENDKTIKLW 307
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 58
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 115
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 116 PQSNLIVSGSFDESVRIW 133
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 240
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 241 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 269
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 293 NIIASAALENDKTIKLW 309
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 60
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 117
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 118 PQSNLIVSGSFDESVRIW 135
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK++
Sbjct: 295 NIIASAALENDKTIKLY 311
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 62
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 119
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 120 PQSNLIVSGSFDESVRIW 137
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 295 NIIASAALENDKTIKLW 311
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L + S D ++ + A + F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSAD-------------------KLIKIWGAYDGKFEK 62
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDA-------PMS 280
GH ++ +A L S S D T+++W++ + + + TL H++ P S
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 281 LLCWDQFLLSCSLDHTIKVW 300
L ++S S D ++++W
Sbjct: 123 NL-----IVSGSFDESVRIW 137
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNMVYIWNLQT 271
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 295 NIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEM 225
++ L GH KAVS + + L S S D ++ + A +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDG 58
Query: 226 LFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
F GH ++ +A L S S D T+++W++ + + + TL H++ + C
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFC 115
Query: 284 WD-----QFLLSCSLDHTIKVW 300
+ ++S S D ++++W
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIW 137
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 244
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 245 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 273
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 297 NIIASAALENDKTIKLW 313
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 64
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 121
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 122 PQSNLIVSGSFDESVRIW 139
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 298 NIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 65
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 122
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 123 PQSNLIVSGSFDESVRIW 140
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 298 NIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 65
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 122
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 123 PQSNLIVSGSFDESVRIW 140
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 263
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYEL 349
+ GK ++ DN V+++ L
Sbjct: 264 IFANFSVTGGK-WIVSGSEDNLVYIWNL 290
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 316 NIIASAALENDKTIKLW 332
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 83
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 140
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 141 PQSNLIVSGSFDESVRIW 158
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+T+K+W +G YT ++
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 261
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYEL 349
+ GK ++ DN V+++ L
Sbjct: 262 IFANFSVTGGK-WIVSGSEDNLVYIWNL 288
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 314 NIIASAALENDKTIKLW 330
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
L GH KAVS + + L S S D ++ + A + F
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDGKFEK 81
Query: 230 AQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-- 285
GH ++ +A L S S D T+++W++ + + + TL H++ + C +
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFN 138
Query: 286 ---QFLLSCSLDHTIKVW 300
++S S D ++++W
Sbjct: 139 PQSNLIVSGSFDESVRIW 156
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
+ GH+ +S +A S+ L S S D T W++ S +L G V+ + +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
++ +G+ D H+ PV+ + R S + S S D R+W+ +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
+ + TL D + P+S + + +++L+ +LD+ +K+W +G YT ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
+ GK + + DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNMVYIWNLQT 271
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 233 GHTRPVTCL-----AVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D 285
GH C+ G + SGS DN + +W L T E V L HTD +S C +
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 286 QFLLSCSL--DHTIKVW 300
+ S +L D TIK+W
Sbjct: 295 NIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEM 225
++ L GH KAVS + + L S S D ++ + A +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSAD-------------------KLIKIWGAYDG 58
Query: 226 LFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
F GH ++ +A L S S D T+++W++ + + + TL H++ + C
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFC 115
Query: 284 WD-----QFLLSCSLDHTIKVW 300
+ ++S S D ++++W
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIW 137
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
E L + LEGH V+ +A + + L S SRD T +W + + PV
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
GH+ V L + S S D T+R+W++ T E H
Sbjct: 62 -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
MS+ D+ ++S S D TIKVW T +G A D + V + D
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
+I A ND V + L F +E I + + PD G G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
AK +
Sbjct: 226 AAKKA 230
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
E L + LEGH V+ +A + + L S SRD T +W + + PV
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
GH+ V L + S S D T+R+W++ T E H
Sbjct: 62 -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
MS+ D+ ++S S D TIKVW T +G A D + V + D
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
+I A ND V + L F +E I + + PD G G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
AK +
Sbjct: 226 AAKKA 230
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
E L + LEGH V+ +A + + L S SRD T +W + + PV
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
GH+ V L + S S D T+R+W++ T E H
Sbjct: 62 -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
MS+ D+ ++S S D TIKVW T +G A D + V + D
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
+I A ND V + L F +E I + + PD G G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
AK +
Sbjct: 226 AAKKA 230
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
E L + LEGH V+ +A + + L S SRD T +W + + PV
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
GH+ V L + S S D T+R+W++ T E H
Sbjct: 62 -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
MS+ D+ ++S S D TIKVW T +G A D + V + D
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
+I A ND V + L F +E I + + PD G G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
AK +
Sbjct: 226 AAKKA 230
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 92/243 (37%), Gaps = 31/243 (12%)
Query: 164 LTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMV 220
L + LEGH V+ +A + + L S SRD T +W + + PV
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF---- 55
Query: 221 VANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
GH+ V L + S S D T+R+W++ T E H
Sbjct: 56 -----------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 279 MSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDGKP 333
MS+ D+ ++S S D TIKVW T +G A D + V + D
Sbjct: 105 MSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 334 VLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKLLA 391
+I A ND V + L F +E I + + PD G G + +W L A
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 392 KPS 394
K +
Sbjct: 222 KKA 224
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 54/270 (20%)
Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFS 208
G E R + W E ++ L+GHE+ + + DKL SGS D T
Sbjct: 141 GAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV---------- 189
Query: 209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT---L 265
++ + L +DG T G+ + +GS+D +RVW+ +T +
Sbjct: 190 ------RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLV 242
Query: 266 EPVMTLND----HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319
E + + N+ H D+ S++ Q ++S SLD ++K+W N + T
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF------------SKHEVRVI 367
+ G D VL A N ++ L +RG +F H VI
Sbjct: 303 EVTYIGHKD----FVLSVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 368 EI--------GPD-KLFFTGDGAGMLGVWK 388
+ GP+ +F TG G +WK
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQF-- 287
+ D + R V C + L +G+ D IR+W+++ + VM L H SL D F
Sbjct: 121 SSDLYIRSV-CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL---DYFPS 176
Query: 288 ---LLSCSLDHTIKVW-FATGRGNL 308
L+S S D T+++W TG+ +L
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSL 201
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEML 226
+ LEGHE V +A + L + SRD + W V+ + +E
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW----------------VWEVDEEDEYE 141
Query: 227 FAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVW--ELDTLEPVMTLNDHTDAPMSLL 282
+ HT+ V + S+ L S S D+T++++ E D TL H SL
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 283 CWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKED---NGVLALGGLNDPDGKPVLI 336
+D Q L SCS D T+++W GN + D + L G + +
Sbjct: 202 -FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 337 C--------ACNDNTVHLY--------ELPSFMERGRIFSKH--EVRVIEIGPDK--LFF 376
C AC D+ + ++ + P+F + H +V + P + L
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 377 TGDGAGMLGVWK 388
+ G + WK
Sbjct: 321 SCSDDGEVAFWK 332
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Query: 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELD 263
+F + GP G ++ + E G GH P++ L + L S S D T+R+W
Sbjct: 219 KFVIPGPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 264 TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
H+ + +S W D ++SCS+D ++++W L + +GV
Sbjct: 278 NGNSQNCFYGHSQSIVSA-SWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV----DGVP 332
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357
G DG+ + A D V++Y+L + R
Sbjct: 333 IFAGRISQDGQKYAV-AFMDGQVNVYDLKKLNSKSR 367
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 234 HTRPV--TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM--SLLCWDQFLL 289
HT V C + R+ S D T++V++ +T E ++ + H D + + D+F+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 290 SCSLDHTIKVWFA-TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
+CS+D +K+W + TG E +T+ E + + + +L +D + L++
Sbjct: 680 TCSVDKKVKIWNSMTG----ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 349 LPSFMERGRIFSK-HEVRVIEIGP-DKLFFTGDGAGMLGVW 387
L R +F + V P DKL + G L +W
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 232 DGHTRPVTCLAVGRSR----LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--- 284
D H+ V C S L +GS D +++W+L+ E T+ HT++ C
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNH--CRFSP 759
Query: 285 -DQFLLSCSLDHTIKVWFATGRG-----NLEAAYTH----KEDNGVLALGGLNDPDGKPV 334
D+ L SCS D T+K+W AT N++ + + +ED V+ DG +
Sbjct: 760 DDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARI 819
Query: 335 LICACNDNTVHLYELPSFMERGRIFSKH 362
++ A N + L+++ + G I + H
Sbjct: 820 MVAA--KNKIFLFDIHTSGLLGEIHTGH 845
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 41/235 (17%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVANEML 226
L GH++ V L L++ +L S S DGT WNI + + E G V S ++++
Sbjct: 1046 LRGHQETVKDFRL-LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA- 1103
Query: 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-APMSLLCWD 285
++ S S D T ++W D L P+ L H S D
Sbjct: 1104 -------------------TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVD 1144
Query: 286 QFLLSCSLDH-TIKVWFATGRGNLEAAYTHKEDNGVLALGGLND----PDGKPVLICACN 340
LL+ D+ I++W + L E+ G + D PDGK +LI A
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK-MLISAGG 1203
Query: 341 D----NTVHLYELPSFMERGRIFSKHEVRVIEIGPD-KLFFTGDGAGMLGVWKLL 390
N V +F G K I + PD K + T D G+L + + L
Sbjct: 1204 YIKWWNVVTGESSQTFYTNGTNLKK-----IHVSPDFKTYVTVDNLGILYILQTL 1253
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 32/229 (13%)
Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA-NEM 225
+LE H +V G+A + S S D T WN +L G V+ + + +
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 226 LFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL 265
A A D GH+ V +A + S S D T+++W +
Sbjct: 71 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 129
Query: 266 EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL 323
+ + TL H+ + + Q + S S D T+K+W G+ L+ H +A
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAF 188
Query: 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372
PDG+ + A +D TV L+ + + VR + PD
Sbjct: 189 ----SPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 232
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 34/208 (16%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA- 222
+L L GH +V G+A + S S D T WN +L G V+ + +
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 149
Query: 223 NEMLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWEL 262
+ A A D GH+ V +A + S S D T+++W
Sbjct: 150 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 209
Query: 263 DTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NG 319
+ + + TL H+ + + Q + S S D T+K+W G+ L+ H NG
Sbjct: 210 NG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNG 267
Query: 320 VLALGGLNDPDGKPVLICACNDNTVHLY 347
V PDG+ + A +D TV L+
Sbjct: 268 VAFR-----PDGQTI-ASASDDKTVKLW 289
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
+L L GH +V+G+A + S S D T WN +L G V+ +
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV---- 309
Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
A + DG T + S S D T+++W + + + TL H+ + +
Sbjct: 310 ----AFSPDGQT------------IASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAF 352
Query: 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341
Q + S S D T+K+W G+ L+ H +A PDG+ + A +D
Sbjct: 353 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF----SPDGQTI-ASASDD 406
Query: 342 NTVHLY 347
TV L+
Sbjct: 407 KTVKLW 412
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 31/186 (16%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
+L L GH +V G+A + S S D T WN +L G V +
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV---- 473
Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
A + DG T + S S D T+++W + + + TL H+ + +
Sbjct: 474 ----AFSPDGQT------------IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAF 516
Query: 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341
Q + S S D T+K+W G+ L+ H +A PDG+ + A +D
Sbjct: 517 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAF----SPDGQTI-ASASSD 570
Query: 342 NTVHLY 347
TV L+
Sbjct: 571 KTVKLW 576
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGP 212
HS C GL +LEGH VS +AL + S S D + WN+++ ++ G
Sbjct: 50 HSSECSYGLPD-RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGH 108
Query: 213 VGEVYSMVVA--NEMLFAGAQD-------------------GHTRPVTCLAVGRSR---- 247
+V S+ + N + +G +D HT V+C+ S
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
+ SG DN ++VW+L T V L HT+ S+
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNI---ESSAEFSLDGPVGEV---- 216
++ L+GH V+ + + S +DG A W++ E+ +E + P+ ++
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP 247
Query: 217 --YSMVVANE--------------MLFAGAQDGHTRPV-TCLAVG----RSRLCSGSMDN 255
Y M A E + A G + V C+++ S L SG DN
Sbjct: 248 NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN 307
Query: 256 TIRVW 260
IRVW
Sbjct: 308 VIRVW 312
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 234 HTRPV--TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM--SLLCWDQFLL 289
HT V C + R+ S D T++V++ +T E ++ + H D + + D ++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 290 SCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
+CS D +K+W ATG+ +T+ E + + + +L ND + L++
Sbjct: 681 TCSADKKVKIWDSATGK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 349 LPSFMERGRIFSK-HEVRVIEIGP-DKLFFTGDGAGMLGVWKL 389
L R +F + V P D+L + G L +W +
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 51/259 (19%)
Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM-VVANEMLFA 228
GH+KAV I L S S D WN ++ L V ++ + L +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 229 GAQDGHT-----------RPVTC---------LAVGRSRLCSGSMDNTIRVWELDTLEPV 268
+ DG R TC ++ ++ S S D T ++W D L P+
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 269 MTLNDHTD-APMSLLCWDQFLLSCSLDH-TIKVWFATGRGNLEAAYTHKEDNGVLALGG- 325
L H S D LL+ D+ I++W + L + + G GG
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1187
Query: 326 LND----PDGKPVLIC---------ACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372
+ D PD K ++ A D++ +F G K I + PD
Sbjct: 1188 VTDVCFSPDSKTLVSAGGYLKWWNVATGDSS------QTFYTNGTNLKK-----IHVSPD 1236
Query: 373 -KLFFTGDGAGMLGVWKLL 390
+ + T D G+L + ++L
Sbjct: 1237 FRTYVTVDNLGILYILQVL 1255
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 234 HTRPV--TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM--SLLCWDQFLL 289
HT V C + R+ S D T++V++ +T E ++ + H D + + D ++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 290 SCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
+CS D +K+W ATG+ +T+ E + + + +L ND + L++
Sbjct: 674 TCSADKKVKIWDSATGK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 349 LPSFMERGRIFSK-HEVRVIEIGP-DKLFFTGDGAGMLGVWKL 389
L R +F + V P D+L + G L +W +
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 51/259 (19%)
Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM-VVANEMLFA 228
GH+KAV I L S S D WN ++ L V ++ + L +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 229 GAQDGHT-----------RPVTC---------LAVGRSRLCSGSMDNTIRVWELDTLEPV 268
+ DG R TC ++ ++ S S D T ++W D L P+
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 269 MTLNDHTD-APMSLLCWDQFLLSCSLDH-TIKVWFATGRGNLEAAYTHKEDNGVLALGG- 325
L H S D LL+ D+ I++W + L + + G GG
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180
Query: 326 LND----PDGKPVLIC---------ACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372
+ D PD K ++ A D++ +F G K I + PD
Sbjct: 1181 VTDVCFSPDSKTLVSAGGYLKWWNVATGDSS------QTFYTNGTNLKK-----IHVSPD 1229
Query: 373 -KLFFTGDGAGMLGVWKLL 390
+ + T D G+L + ++L
Sbjct: 1230 FRTYVTVDNLGILYILQVL 1248
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
+ E H + IA+ + SGS D T WN E++ A E
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------ALE 133
Query: 225 MLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
F +GH V C+A S SG +D T++VW L P TL + ++
Sbjct: 134 QTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 282 LCW-----DQFLLSCSLDHTIKVW 300
+ + ++++ S D TIK+W
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIW 213
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302
++ + GS D IRV+ +T E V+ H D S+ ++LS S D T+K+W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
LE + E + DP C D TV ++ L
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPS---TFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
+ E H + IA+ + SGS D T WN E++ A E
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------ALE 133
Query: 225 MLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
F +GH V C+A S SG +D T++VW L P TL + ++
Sbjct: 134 QTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 282 LCW-----DQFLLSCSLDHTIKVW 300
+ + ++++ S D TIK+W
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIW 213
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302
++ + GS D IRV+ +T E V+ H D S+ ++LS S D T+K+W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
LE + E + DP C D TV ++ L
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPS---TFASGCLDRTVKVWSL 170
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 39/243 (16%)
Query: 162 EGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGT--AWNIESSA------EFSLDGP 212
E +T+ L+GH V+ IA P D + S SRD T W + + +L G
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
V +V++++ FA SGS D T+R+W+L T
Sbjct: 63 SHFVSDVVISSDGQFA--------------------LSGSWDGTLRLWDLTTGTTTRRFV 102
Query: 273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN-DP 329
HT +S+ ++ ++S S D TIK+W G YT ++++ + + P
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSP 158
Query: 330 DGKPVLICACN-DNTVHLYELPSF-MERGRIFSKHEVRVIEIGPD-KLFFTGDGAGMLGV 386
+ +I +C D V ++ L + ++ I + + + PD L +G G +
Sbjct: 159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 387 WKL 389
W L
Sbjct: 219 WDL 221
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
+ E H + IA+ + SGS D T WN E++ A E
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------ALE 133
Query: 225 MLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
F +GH V C+A S SG +D T++VW L P TL + ++
Sbjct: 134 QTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 282 LCW-----DQFLLSCSLDHTIKVW 300
+ + ++++ S D TIK+W
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIW 213
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302
++ + GS D IRV+ +T E V+ H D S+ ++LS S D T+K+W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL----PSF-----M 353
LE + E + DP C D TV ++ L P+F
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP---STFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 354 ERG 356
ERG
Sbjct: 184 ERG 186
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 57/252 (22%)
Query: 163 GLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGTA--WNIESS------AEFSLDGPV 213
GL + + H V+ IA P+ +D + S SRD + W + A+ L G
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 214 GEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND 273
V +V++++ FA SGS D +R+W+L
Sbjct: 431 HFVEDVVLSSDGQFA--------------------LSGSWDGELRLWDLAAGVSTRRFVG 470
Query: 274 HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331
HT +S+ ++ ++S S D TIK+W G E YT E GG D
Sbjct: 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG----ECKYTISE-------GGEGHRDW 519
Query: 332 -----------KPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRVIEIGPD-KLFFT 377
+P ++ A D TV ++ L + R + + H V + + PD L +
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCAS 578
Query: 378 GDGAGMLGVWKL 389
G G++ +W L
Sbjct: 579 GGKDGVVLLWDL 590
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGP 212
L W G++ + GH K V +A L + ++ S SRD T WN ++++
Sbjct: 454 LRLWDLAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI--- 509
Query: 213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPV 268
+ +GH V+C+ + + S S D T++VW L +
Sbjct: 510 ---------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 269 MTLNDHT 275
TL HT
Sbjct: 555 STLAGHT 561
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 40/256 (15%)
Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGT--AWNIESSA 205
G E + S E +T+ L+GH V+ IA P D + S SRD T W +
Sbjct: 14 GTENLYFQS-MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE 72
Query: 206 ------EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRV 259
+ +L G V +V++++ FA SGS D T+R+
Sbjct: 73 TNYGIPQRALRGHSHFVSDVVISSDGQFA--------------------LSGSWDGTLRL 112
Query: 260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317
W+L T HT +S+ ++ ++S S D TIK+W G YT +++
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----VCKYTVQDE 168
Query: 318 NGVLALGGLN-DPDGKPVLICACN-DNTVHLYELPSF-MERGRIFSKHEVRVIEIGPD-K 373
+ + + P+ +I +C D V ++ L + ++ I + + + PD
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 374 LFFTGDGAGMLGVWKL 389
L +G G +W L
Sbjct: 229 LCASGGKDGQAMLWDL 244
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVAN 223
+ +LA +EGHE V G+A L + SRD + W E+ GE Y +
Sbjct: 97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES-------GEEYECI--- 146
Query: 224 EMLFAGAQD-GHT--RPVTCLAVGRSRLCSGSMDNTIRVWE--LDTLEPVMTLNDHTDAP 278
+L +QD H P L L S S D+T+R+W+ D E V LN H
Sbjct: 147 SVLQEHSQDVKHVIWHPSEAL------LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Query: 279 MSLLCWDQF--------LLSCSLDHTIKVWFATG 304
S F L S S D T++VW G
Sbjct: 201 WS----SDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
+ E H + IA+ + SGS D T WN E++ A E
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------ALE 133
Query: 225 MLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
F +GH V C+A S SG +D T++VW L P TL + ++
Sbjct: 134 QTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 282 LCW-----DQFLLSCSLDHTIKVW 300
+ + ++++ S D TIK+W
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIW 213
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302
++ + GS D IRV+ +T E V+ H D S+ ++LS S D T+K+W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL----PSF-----M 353
LE + E + DP C D TV ++ L P+F
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDP---STFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 354 ERG 356
ERG
Sbjct: 184 ERG 186
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD--TLEPVMTLN 272
YS+ E+ + HT V C++ RL +GS+DN++ VW ++ + P++
Sbjct: 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
Query: 273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300
H + ++ + W + ++S D IK W
Sbjct: 578 AHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 56/158 (35%), Gaps = 38/158 (24%)
Query: 249 CSGSMDNTIRVWE-------LDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWF 301
SG + +R+W+ L T PV + P+ + WD K
Sbjct: 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFS------GPVKDISWDS---------ESKRIA 119
Query: 302 ATGRGNLEAAYTHKEDNGVL------ALGGLNDPDGKPV----LICACNDNTVHLYELPS 351
A G G + D G +N D KP +I +DNTV ++E P
Sbjct: 120 AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 352 FMERGRIFSKHE--VRVIEIGPDKLFFT---GDGAGML 384
F + F +H V + PD F GDG +L
Sbjct: 180 FKFK-STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 137 VCCHWLLGNCVRGDECRFLHSW 158
VC HWL G C +GD+C FLH +
Sbjct: 18 VCKHWLRGLCKKGDQCEFLHEY 39
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 22/115 (19%)
Query: 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVY 217
+F G + + KL GHE+ ++ + D LFS S+D +A S +SL+G
Sbjct: 17 YFQGSHMKAI-KLTGHERPLTQVKYNKEGDLLFSCSKDSSA-----SVWYSLNG------ 64
Query: 218 SMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLC-SGSMDNTIRVWELDTLEPVMT 270
E L G DGHT + + V ++ C +GS D +I++W++ + V T
Sbjct: 65 ------ERL--GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 229 GAQDGHTRPVTCLAVGRSR--------LCSGSMDNTIRVWELDTLEP---------VMTL 271
G +GH+ VT + G S+ L SGS D T+ +W+L E +T
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 272 NDHTDAPMSLLCWDQFLLSCSLDHTIKVW 300
++H + ++L + F +S S D T+++W
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLW 103
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 170 LEGHEKAVSGIALPLRSDK------LFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
LEGH V+ I + L SGSRD T W + + +G G +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ---NGYFGIPHK--- 70
Query: 222 ANEMLFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
A GH V+ LA+ + S S D T+R+W+L T H
Sbjct: 71 --------ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122
Query: 280 SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAA 311
S+ ++ +LS + IK+W G +A
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 39/241 (16%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVV 221
E T L + GH+ V L L SGSR G + + +
Sbjct: 164 ESQTKLRTMAGHQARVG--CLSWNRHVLSSGSRSGAI----------------HHHDVRI 205
Query: 222 ANEMLFAGAQDGHTRPVTCLAVGRS---RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
AN + G GH+ V LA RS +L SG DN +++W+ + P T +H A
Sbjct: 206 ANHQI--GTLQGHSSEVCGLA-WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 279 MSLLC--WDQFLLSC---SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333
++ W LL+ ++D I W A A + D G + P K
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAA-----TGARVNTVDAGSQVTSLIWSPHSKE 317
Query: 334 VLIC-ACNDNTVHLYELPSF-MERGRIFSKHEVRVI--EIGPD-KLFFTGDGAGMLGVWK 388
++ DN + ++ S + + H+ RV+ + PD ++ T L W+
Sbjct: 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Query: 389 L 389
+
Sbjct: 378 V 378
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 230 AQDGHTRPV--TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQF 287
AQ HT PV C + S++ + S D T ++W+L + + + DAP+ + W +
Sbjct: 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH--DAPVKTIHWIKA 138
Query: 288 -----LLSCSLDHTIKVW 300
+++ S D T+K W
Sbjct: 139 PNYSCVMTGSWDKTLKFW 156
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSW 158
G +S + T+ VC HWL G C +GD+C FLH +
Sbjct: 1 GSSGSSGEKTV--VCKHWLRGLCKKGDQCEFLHEY 33
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 24/159 (15%)
Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMV 220
G+ + A GH V +A L + LF D I + + P V
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLV---- 271
Query: 221 VANEMLFAGAQDGHTRPVTCLAVGRSR---LCSGSMDNTIRVWELDTLE-PVMTLNDHTD 276
D HT V CL+ L +GS D T+ +W+L L+ + T H D
Sbjct: 272 -----------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 277 APMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAA 311
+ + W + L S D + VW + G ++A
Sbjct: 321 E-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 24/159 (15%)
Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMV 220
G+ + A GH V +A L + LF D I + + P V
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLV---- 271
Query: 221 VANEMLFAGAQDGHTRPVTCLAVGRSR---LCSGSMDNTIRVWELDTLE-PVMTLNDHTD 276
D HT V CL+ L +GS D T+ +W+L L+ + T H D
Sbjct: 272 -----------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKD 320
Query: 277 APMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAA 311
+ + W + L S D + VW + G ++A
Sbjct: 321 E-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVY-----SM 219
+ E HE V+ + D SGS D T +++ + E ++ ++
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292
Query: 220 VVANEMLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRV 259
++ +LFAG D GH V+ L V + CSGS D+T+RV
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Query: 260 W 260
W
Sbjct: 353 W 353
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT----DAPMSLLCWDQFL 288
GH V L+ + SGS D T +VW+ +L V L H DA + ++F
Sbjct: 102 GHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF- 158
Query: 289 LSCSLDHTIKVW 300
L+ S D TIK+W
Sbjct: 159 LTASADKTIKLW 170
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL 189
K T + V H R D FL + +G ML + + AV L +R +
Sbjct: 60 KGNTFEKVGSHLYKA---RLDGHDFLFNTIIRDGSKMLKRAD--YTAVDTAKLQMR--RF 112
Query: 190 FSGSRDGTAWNIESSAEFSLDGPVGEVYSMVV-------ANEMLFAGAQD---------- 232
G+ +G ++S+ F+L + + + + + E L + +QD
Sbjct: 113 ILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 233 --------GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
GH VT +A+ GR+ L S S+D TIR+WE T + T N
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFN 220
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 233 GHTRPVTCLAVGRS--RLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
H+ V L+ S LCS D +R W++ T E + TLN H D
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 344
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 233 GHTRPVTCLAVGRS--RLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
H+ V L+ S LCS D +R W++ T E + TLN H D
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 334
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL 189
K T + V H R D FL + +G ML + + AV L +R +
Sbjct: 57 KGNTFEKVGSHLYKA---RLDGHDFLFNTIIRDGSKMLKRAD--YTAVDTAKLQMR--RF 109
Query: 190 FSGSRDGTAWNIESSAEFSLDGPVGEVYSMVV-------ANEMLFAGAQD---------- 232
G+ +G ++S+ F+L + + + + + E L + +QD
Sbjct: 110 ILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 233 --------GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
GH VT +A+ GR+ L S S+D TIR+WE T + T N
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFN 217
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 29/191 (15%)
Query: 210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEP 267
D GE Y V GH V + + + S + SGS D TI+VW + +
Sbjct: 93 DVATGETYQRFV-----------GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QC 140
Query: 268 VMTLNDHTD-------APMSLLCWDQF-LLSCSLDHTIKVWFATGRGNLEAAYT-HKEDN 318
+ TL H D P D ++S D +K W + +EA + H +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW-NLNQFQIEADFIGHNSNI 199
Query: 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTG 378
L PDG ++ A D + L+ L + + ++ EV + P++ +
Sbjct: 200 NTLTAS----PDG-TLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 379 DGAGMLGVWKL 389
A + V+ L
Sbjct: 255 ATATGIKVFSL 265
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDH 295
+ V +A G R+ S S+D T+ +EL E + T++ H +L L+S S D
Sbjct: 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDG 357
Query: 296 TIKVW 300
I W
Sbjct: 358 RIXEW 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDH 295
+ V +A G R+ S S+D T+ +EL E + T++ H +L L+S S D
Sbjct: 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDG 357
Query: 296 TIKVW 300
I W
Sbjct: 358 RIMEW 362
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231
GH V +A L + LF D I + + P V
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------------- 277
Query: 232 DGHTRPVTCLAVGRSR---LCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--- 284
D HT V CL+ L +GS D T+ +W+L L+ + + H D + W
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPH 336
Query: 285 -DQFLLSCSLDHTIKVW 300
+ L S D + VW
Sbjct: 337 NETILASSGTDRRLHVW 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231
GH V +A L + LF D I + + P V
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------------- 275
Query: 232 DGHTRPVTCLAVGRSR---LCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--- 284
D HT V CL+ L +GS D T+ +W+L L+ + + H D + W
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPH 334
Query: 285 -DQFLLSCSLDHTIKVW 300
+ L S D + VW
Sbjct: 335 NETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231
GH V +A L + LF D I + + P V
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--------------- 273
Query: 232 DGHTRPVTCLAVGRSR---LCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--- 284
D HT V CL+ L +GS D T+ +W+L L+ + + H D + W
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPH 332
Query: 285 -DQFLLSCSLDHTIKVW 300
+ L S D + VW
Sbjct: 333 NETILASSGTDRRLHVW 349
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 169 KLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNI----------ESSAEFSLDGPVGE 215
+L GH+K G++ P S L S S D T W+I ++ F+ V E
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 216 VYSMVVANEMLFAGAQD----------------------GHTRPVTCLAVGRSR---LCS 250
S + +E LF D HT V CL+ L +
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 251 GSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVW 300
GS D T+ +W+L L+ + + H D + + W + L S D + VW
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDE-IFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 19/89 (21%)
Query: 177 VSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA-QDGHT 235
V+ +A + LF+G +G + V+ ++A +L G Q+ H
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCY----------------VWDTLLAEMVLNLGTLQNSHE 344
Query: 236 RPVTCLAVGR--SRLCSGSMDNTIRVWEL 262
++CL + S LC+GS D +++W
Sbjct: 345 GRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 170 LEGHEKAVSGIA-LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226
L GH+ S +P + +L +GS D T W++ + S+ G
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG--------------- 197
Query: 227 FAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELD-TLEPVMTLNDH 274
+ GHT V L++ + SGS D T+R+W+L T V T + H
Sbjct: 198 -SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH 248
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 223 NEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWEL 262
N+ L Q GHT +C+ + ++L +G +DNT+R W+L
Sbjct: 172 NQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 39 VCVYVLEGRCNR--NPCRFAHTESSSLLLSN 67
VC G CNR N CRFAH S+++ +N
Sbjct: 8 VCREYQRGNCNRGENDCRFAHPADSTMIDTN 38
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 248 LCSGSMDNTIRVWEL--DTLEPVMT-LNDHTDAPMS----LLCWDQFLLSCSLDHTIKVW 300
L S S D+ +R+W + DTL + + H D +S LL + ++SC +DH++K+W
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 188
Query: 301 FATGRGNLEA 310
+ + A
Sbjct: 189 RINSKRMMNA 198
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 248 LCSGSMDNTIRVWEL--DTLEPVMT-LNDHTDAPMS----LLCWDQFLLSCSLDHTIKVW 300
L S S D+ +R+W + DTL + + H D +S LL + ++SC +DH++K+W
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 187
Query: 301 FATGRGNLEA 310
+ + A
Sbjct: 188 RINSKRMMNA 197
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 248 LCSGSMDNTIRVWEL--DTLEPVMT-LNDHTDAPMS----LLCWDQFLLSCSLDHTIKVW 300
L S S D+ +R+W + DTL + + H D +S LL + ++SC +DH++K+W
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 183
Query: 301 FATGRGNLEA 310
+ + A
Sbjct: 184 RINSKRMMNA 193
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 248 LCSGSMDNTIRVWEL--DTLEPVMT-LNDHTDAPMS----LLCWDQFLLSCSLDHTIKVW 300
L S S D+ +R+W + DTL + + H D +S LL + ++SC +DH++K+W
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 187
Query: 301 FATGRGNLEA 310
+ + A
Sbjct: 188 RINSKRMMNA 197
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 248 LCSGSMDNTIRVWEL--DTLEPVMT-LNDHTDAPMS----LLCWDQFLLSCSLDHTIKVW 300
L S S D+ +R+W + DTL + + H D +S LL + ++SC +DH++K+W
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 224
Query: 301 FATGRGNLEA 310
+ + A
Sbjct: 225 RINSKRMMNA 234
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 232 DGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTL 271
+GHT+ V +A ++ L S DN I VW++ T V+TL
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,906,224
Number of Sequences: 62578
Number of extensions: 487461
Number of successful extensions: 1336
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 274
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)