Query 016134
Match_columns 394
No_of_seqs 638 out of 3378
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7.8E-44 1.7E-48 315.5 23.5 284 83-388 126-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-41 8.1E-46 302.0 17.8 274 72-388 174-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 3.1E-39 6.7E-44 286.4 20.9 262 121-393 110-442 (480)
4 KOG0286 G-protein beta subunit 100.0 4.2E-34 9.1E-39 246.0 26.2 270 75-388 60-343 (343)
5 KOG0273 Beta-transducin family 100.0 2.3E-34 5.1E-39 261.5 25.6 300 75-390 183-523 (524)
6 KOG0272 U4/U6 small nuclear ri 100.0 1E-35 2.3E-40 267.1 14.5 254 39-348 198-458 (459)
7 KOG0645 WD40 repeat protein [G 100.0 8.6E-34 1.9E-38 241.7 24.6 274 74-390 14-311 (312)
8 KOG0279 G protein beta subunit 100.0 3.4E-33 7.5E-38 239.0 25.2 265 84-390 28-313 (315)
9 KOG0315 G-protein beta subunit 100.0 5.5E-32 1.2E-36 228.1 25.4 266 83-393 9-291 (311)
10 KOG0295 WD40 repeat-containing 100.0 2.1E-33 4.6E-38 248.1 17.5 265 81-389 116-405 (406)
11 KOG0284 Polyadenylation factor 100.0 4.4E-34 9.4E-39 255.6 11.6 294 44-389 76-379 (464)
12 KOG0286 G-protein beta subunit 100.0 3.5E-31 7.5E-36 228.0 27.3 224 164-392 45-305 (343)
13 KOG0281 Beta-TrCP (transducin 100.0 5.3E-33 1.2E-37 244.1 16.4 245 138-393 202-480 (499)
14 KOG0279 G protein beta subunit 100.0 3.9E-31 8.5E-36 226.4 25.9 242 120-392 9-264 (315)
15 KOG0285 Pleiotropic regulator 100.0 4.2E-32 9.2E-37 239.3 20.4 239 122-393 147-392 (460)
16 KOG0285 Pleiotropic regulator 100.0 2.4E-32 5.1E-37 240.9 18.6 273 73-391 148-440 (460)
17 KOG0319 WD40-repeat-containing 100.0 7.8E-32 1.7E-36 256.8 19.9 290 83-392 116-537 (775)
18 KOG0318 WD40 repeat stress pro 100.0 1.4E-30 3E-35 239.8 26.4 294 73-390 238-602 (603)
19 KOG0263 Transcription initiati 100.0 3.7E-31 8E-36 254.5 20.4 201 165-391 442-650 (707)
20 KOG0266 WD40 repeat-containing 100.0 4.7E-30 1E-34 250.8 28.3 268 83-390 170-454 (456)
21 KOG0318 WD40 repeat stress pro 100.0 4.8E-29 1E-33 229.7 31.0 300 72-392 16-352 (603)
22 KOG0265 U5 snRNP-specific prot 100.0 6.2E-29 1.4E-33 214.9 25.8 269 115-389 36-337 (338)
23 KOG0295 WD40 repeat-containing 100.0 3.9E-30 8.4E-35 227.4 18.7 244 122-392 104-366 (406)
24 PLN00181 protein SPA1-RELATED; 100.0 1.8E-28 3.9E-33 256.1 32.4 275 75-389 488-792 (793)
25 KOG0281 Beta-TrCP (transducin 100.0 1.6E-30 3.4E-35 228.6 11.5 243 83-354 206-481 (499)
26 KOG0316 Conserved WD40 repeat- 100.0 4.6E-29 9.9E-34 208.9 19.5 237 122-392 13-259 (307)
27 KOG0266 WD40 repeat-containing 100.0 2.3E-28 4.9E-33 238.9 27.7 238 126-392 159-411 (456)
28 KOG0293 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 221.3 22.6 262 122-391 220-514 (519)
29 KOG0319 WD40-repeat-containing 100.0 1.2E-28 2.7E-33 235.1 22.9 285 83-390 292-619 (775)
30 KOG0273 Beta-transducin family 100.0 3.2E-28 6.9E-33 221.7 24.1 259 125-392 177-484 (524)
31 KOG0278 Serine/threonine kinas 100.0 1.2E-28 2.7E-33 208.0 18.8 259 121-392 9-299 (334)
32 KOG0274 Cdc4 and related F-box 100.0 7.7E-28 1.7E-32 235.4 27.4 249 137-393 212-485 (537)
33 KOG0291 WD40-repeat-containing 100.0 2E-27 4.3E-32 227.3 29.2 256 127-392 308-614 (893)
34 KOG0263 Transcription initiati 100.0 1.4E-28 3E-33 236.9 21.1 266 81-378 387-703 (707)
35 KOG0288 WD40 repeat protein Ti 100.0 7.3E-29 1.6E-33 222.6 17.7 274 73-388 178-459 (459)
36 KOG0291 WD40-repeat-containing 100.0 4.4E-27 9.6E-32 224.9 30.8 300 72-392 147-510 (893)
37 cd00200 WD40 WD40 domain, foun 100.0 1.2E-26 2.7E-31 210.8 31.4 256 122-388 5-289 (289)
38 KOG0316 Conserved WD40 repeat- 100.0 9.3E-28 2E-32 201.1 21.5 273 73-388 17-297 (307)
39 KOG0276 Vesicle coat complex C 100.0 6.5E-28 1.4E-32 226.2 22.2 251 125-386 12-295 (794)
40 KOG0282 mRNA splicing factor [ 100.0 2.9E-28 6.3E-33 222.7 17.6 260 121-388 209-503 (503)
41 KOG0313 Microtubule binding pr 100.0 3.6E-27 7.7E-32 209.7 24.0 253 124-390 103-418 (423)
42 KOG0645 WD40 repeat protein [G 100.0 2.5E-26 5.5E-31 196.2 26.3 239 121-392 9-263 (312)
43 KOG0284 Polyadenylation factor 100.0 1.1E-28 2.4E-33 221.1 11.0 231 128-390 98-337 (464)
44 KOG0292 Vesicle coat complex C 100.0 4.2E-27 9E-32 228.3 22.5 253 128-391 11-322 (1202)
45 KOG0274 Cdc4 and related F-box 100.0 5.3E-27 1.1E-31 229.6 22.2 252 84-360 218-492 (537)
46 KOG0315 G-protein beta subunit 100.0 2.3E-26 5.1E-31 194.2 21.9 222 141-391 12-246 (311)
47 KOG0306 WD40-repeat-containing 100.0 6.6E-26 1.4E-30 216.8 26.3 291 83-392 76-582 (888)
48 KOG0643 Translation initiation 99.9 1.6E-26 3.4E-31 197.1 18.3 259 121-390 5-317 (327)
49 KOG0301 Phospholipase A2-activ 99.9 3.6E-26 7.7E-31 217.0 21.8 260 83-391 24-289 (745)
50 KOG0275 Conserved WD40 repeat- 99.9 9.4E-27 2E-31 203.3 15.7 258 122-388 209-507 (508)
51 KOG0296 Angio-associated migra 99.9 1.9E-25 4.1E-30 197.9 23.9 264 121-392 59-358 (399)
52 KOG0296 Angio-associated migra 99.9 4.4E-25 9.5E-30 195.6 24.4 283 83-390 75-398 (399)
53 KOG0265 U5 snRNP-specific prot 99.9 1.5E-25 3.2E-30 194.1 20.1 222 165-392 38-298 (338)
54 PTZ00421 coronin; Provisional 99.9 2.7E-24 5.9E-29 210.1 31.6 207 169-392 70-292 (493)
55 PTZ00420 coronin; Provisional 99.9 3.8E-24 8.3E-29 210.2 32.7 228 149-392 50-295 (568)
56 KOG0276 Vesicle coat complex C 99.9 7.1E-26 1.5E-30 212.6 19.3 223 166-391 5-258 (794)
57 PTZ00421 coronin; Provisional 99.9 2E-24 4.2E-29 211.1 29.9 262 83-373 31-315 (493)
58 KOG1407 WD40 repeat protein [F 99.9 8.9E-25 1.9E-29 185.9 23.3 260 122-391 16-312 (313)
59 KOG0300 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 195.1 18.2 263 86-393 162-479 (481)
60 KOG0277 Peroxisomal targeting 99.9 5.4E-26 1.2E-30 192.6 14.7 231 128-388 62-307 (311)
61 KOG0289 mRNA splicing factor [ 99.9 1.8E-24 3.8E-29 195.6 24.8 265 84-389 231-505 (506)
62 KOG0277 Peroxisomal targeting 99.9 6.7E-25 1.5E-29 185.9 19.8 233 135-392 16-267 (311)
63 KOG0283 WD40 repeat-containing 99.9 6.4E-25 1.4E-29 213.3 22.4 243 119-392 259-578 (712)
64 KOG0305 Anaphase promoting com 99.9 5.1E-24 1.1E-28 201.9 26.6 237 150-392 194-463 (484)
65 PTZ00420 coronin; Provisional 99.9 6.7E-24 1.5E-28 208.5 28.4 242 89-373 49-318 (568)
66 PLN00181 protein SPA1-RELATED; 99.9 9.4E-24 2E-28 220.7 31.4 236 122-391 479-739 (793)
67 cd00200 WD40 WD40 domain, foun 99.9 2.6E-23 5.5E-28 188.9 29.1 220 167-391 2-250 (289)
68 KOG0641 WD40 repeat protein [G 99.9 5.5E-23 1.2E-27 171.6 27.5 256 125-390 31-349 (350)
69 KOG0283 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 210.3 21.5 219 165-391 257-533 (712)
70 KOG0293 WD40 repeat-containing 99.9 8.9E-25 1.9E-29 196.3 17.1 262 72-352 222-515 (519)
71 KOG0292 Vesicle coat complex C 99.9 6.3E-24 1.4E-28 206.3 24.2 244 83-350 62-321 (1202)
72 KOG0640 mRNA cleavage stimulat 99.9 2.2E-24 4.8E-29 187.5 17.6 265 121-390 107-426 (430)
73 KOG0310 Conserved WD40 repeat- 99.9 8.7E-24 1.9E-28 193.8 21.0 228 127-388 69-307 (487)
74 KOG1539 WD repeat protein [Gen 99.9 1.6E-23 3.5E-28 202.6 24.0 285 81-388 166-646 (910)
75 KOG0306 WD40-repeat-containing 99.9 2.8E-23 6E-28 199.0 24.4 257 121-391 368-665 (888)
76 KOG0313 Microtubule binding pr 99.9 1.9E-23 4.1E-28 186.1 20.9 213 172-392 103-378 (423)
77 KOG0300 WD40 repeat-containing 99.9 2E-23 4.4E-28 182.0 19.9 222 164-391 138-429 (481)
78 KOG0264 Nucleosome remodeling 99.9 9.4E-24 2E-28 192.2 18.4 245 124-390 122-404 (422)
79 KOG0299 U3 snoRNP-associated p 99.9 2.2E-23 4.7E-28 189.9 19.7 238 122-392 138-412 (479)
80 KOG0973 Histone transcription 99.9 3.4E-23 7.4E-28 206.1 21.7 284 83-392 24-357 (942)
81 KOG0643 Translation initiation 99.9 2.3E-22 5.1E-27 171.7 22.4 196 169-391 5-221 (327)
82 KOG1446 Histone H3 (Lys4) meth 99.9 9.9E-22 2.1E-26 171.8 26.1 265 83-390 25-303 (311)
83 KOG0299 U3 snoRNP-associated p 99.9 1.6E-22 3.5E-27 184.3 21.8 269 83-384 153-450 (479)
84 KOG1332 Vesicle coat complex C 99.9 6.1E-23 1.3E-27 173.2 17.1 247 122-393 7-289 (299)
85 KOG1407 WD40 repeat protein [F 99.9 3.4E-22 7.4E-27 170.2 20.9 254 72-350 22-311 (313)
86 KOG0288 WD40 repeat protein Ti 99.9 1.7E-23 3.8E-28 188.1 13.6 232 128-392 177-419 (459)
87 KOG0647 mRNA export protein (c 99.9 2.7E-22 5.8E-27 174.0 20.4 234 127-391 28-282 (347)
88 KOG0282 mRNA splicing factor [ 99.9 1.9E-23 4.2E-28 191.2 12.8 224 165-392 205-464 (503)
89 KOG0310 Conserved WD40 repeat- 99.9 2E-22 4.4E-27 184.9 18.2 229 128-390 28-268 (487)
90 KOG0308 Conserved WD40 repeat- 99.9 9.9E-23 2.1E-27 192.5 16.5 278 86-390 39-327 (735)
91 KOG1408 WD40 repeat protein [F 99.9 2.5E-22 5.5E-27 191.3 19.4 281 83-391 391-714 (1080)
92 KOG0641 WD40 repeat protein [G 99.9 1E-20 2.2E-25 158.1 26.5 226 164-391 23-304 (350)
93 KOG1446 Histone H3 (Lys4) meth 99.9 8.6E-21 1.9E-25 166.0 27.1 227 164-392 4-264 (311)
94 KOG0268 Sof1-like rRNA process 99.9 1.1E-22 2.5E-27 180.2 15.4 255 122-391 62-346 (433)
95 KOG0646 WD40 repeat protein [G 99.9 6.7E-22 1.5E-26 180.5 20.7 261 87-392 10-309 (476)
96 KOG0275 Conserved WD40 repeat- 99.9 5.5E-22 1.2E-26 173.5 18.0 218 172-392 211-469 (508)
97 KOG1273 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 170.9 19.7 258 129-393 26-325 (405)
98 KOG0278 Serine/threonine kinas 99.9 7.3E-22 1.6E-26 167.2 16.9 219 168-393 8-257 (334)
99 KOG1063 RNA polymerase II elon 99.9 5.3E-21 1.2E-25 182.0 24.5 309 74-390 195-699 (764)
100 KOG1408 WD40 repeat protein [F 99.9 4.6E-21 1E-25 182.8 21.9 132 74-224 41-176 (1080)
101 KOG0308 Conserved WD40 repeat- 99.9 8.3E-22 1.8E-26 186.3 15.8 229 135-391 33-286 (735)
102 KOG0973 Histone transcription 99.9 1E-20 2.2E-25 188.6 24.1 261 121-390 8-312 (942)
103 KOG0294 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 163.9 21.6 243 83-370 52-306 (362)
104 KOG0646 WD40 repeat protein [G 99.9 3.1E-21 6.6E-26 176.3 17.7 251 88-372 55-330 (476)
105 KOG0294 WD40 repeat-containing 99.9 2.5E-20 5.4E-25 162.7 22.2 231 124-392 41-283 (362)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-19 3.8E-24 166.8 29.3 264 87-392 4-281 (300)
107 KOG0772 Uncharacterized conser 99.9 3.4E-21 7.4E-26 177.7 17.3 222 167-391 160-446 (641)
108 KOG1036 Mitotic spindle checkp 99.9 3.7E-20 8E-25 161.4 21.3 218 173-394 12-266 (323)
109 KOG1332 Vesicle coat complex C 99.9 2.9E-21 6.4E-26 163.1 13.8 246 83-351 22-287 (299)
110 KOG0772 Uncharacterized conser 99.9 3.2E-20 7E-25 171.3 21.2 259 121-387 162-484 (641)
111 KOG0640 mRNA cleavage stimulat 99.9 6.2E-21 1.3E-25 166.1 15.1 213 166-392 104-337 (430)
112 KOG0289 mRNA splicing factor [ 99.9 4.2E-20 9.2E-25 167.4 21.0 217 146-389 234-461 (506)
113 KOG0321 WD40 repeat-containing 99.9 1.7E-20 3.8E-25 177.1 19.1 290 87-391 67-392 (720)
114 KOG0647 mRNA export protein (c 99.9 9.6E-20 2.1E-24 158.3 22.1 269 68-378 25-311 (347)
115 KOG0267 Microtubule severing p 99.9 6.3E-22 1.4E-26 189.0 7.7 205 154-391 15-227 (825)
116 KOG0301 Phospholipase A2-activ 99.9 3.7E-20 7.9E-25 176.4 19.5 232 121-390 9-249 (745)
117 KOG2106 Uncharacterized conser 99.9 6.9E-19 1.5E-23 162.3 27.2 278 86-389 215-520 (626)
118 KOG0264 Nucleosome remodeling 99.9 4.6E-20 1E-24 168.2 18.9 208 169-391 119-348 (422)
119 KOG0305 Anaphase promoting com 99.8 2.4E-20 5.1E-25 177.1 16.9 230 74-352 221-463 (484)
120 KOG0270 WD40 repeat-containing 99.8 4.4E-20 9.5E-25 167.8 17.6 224 139-392 192-451 (463)
121 KOG1274 WD40 repeat protein [G 99.8 3.3E-19 7.2E-24 174.8 24.7 220 171-391 10-263 (933)
122 KOG4283 Transcription-coupled 99.8 2E-19 4.2E-24 155.9 20.2 263 121-389 38-364 (397)
123 KOG0269 WD40 repeat-containing 99.8 1.6E-20 3.5E-25 180.8 14.2 220 138-386 99-336 (839)
124 KOG0302 Ribosome Assembly prot 99.8 2.7E-19 5.8E-24 159.7 19.4 215 150-388 172-436 (440)
125 KOG0269 WD40 repeat-containing 99.8 1.9E-20 4E-25 180.4 12.6 189 176-390 89-296 (839)
126 KOG0268 Sof1-like rRNA process 99.8 2.4E-20 5.1E-25 165.6 11.6 220 165-392 57-304 (433)
127 KOG0267 Microtubule severing p 99.8 7.4E-21 1.6E-25 181.8 9.0 208 147-381 44-259 (825)
128 KOG2096 WD40 repeat protein [G 99.8 3.8E-19 8.3E-24 155.6 18.6 276 75-388 91-400 (420)
129 KOG2048 WD40 repeat protein [G 99.8 2.1E-18 4.4E-23 164.3 25.1 252 127-390 26-319 (691)
130 KOG2445 Nuclear pore complex c 99.8 2.8E-18 6.1E-23 149.6 23.2 249 120-390 7-318 (361)
131 KOG1036 Mitotic spindle checkp 99.8 4.2E-18 9E-23 148.6 23.7 245 127-380 14-294 (323)
132 KOG0639 Transducin-like enhanc 99.8 2.2E-19 4.8E-24 165.3 16.3 265 86-390 432-704 (705)
133 KOG4283 Transcription-coupled 99.8 8.5E-19 1.8E-23 151.9 18.2 212 170-392 39-278 (397)
134 KOG0302 Ribosome Assembly prot 99.8 9.1E-19 2E-23 156.3 18.1 216 168-393 145-381 (440)
135 KOG1034 Transcriptional repres 99.8 1.9E-19 4.1E-24 158.1 12.5 227 140-390 106-383 (385)
136 KOG2106 Uncharacterized conser 99.8 5E-17 1.1E-21 150.1 28.0 271 121-394 99-481 (626)
137 KOG1063 RNA polymerase II elon 99.8 3.5E-18 7.7E-23 163.0 20.9 289 87-392 162-650 (764)
138 KOG0303 Actin-binding protein 99.8 2.3E-18 5E-23 154.6 18.2 207 168-393 75-297 (472)
139 KOG0270 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 158.7 15.7 207 177-391 176-405 (463)
140 KOG4378 Nuclear protein COP1 [ 99.8 3.1E-18 6.6E-23 157.7 18.4 259 90-393 8-283 (673)
141 KOG4328 WD40 protein [Function 99.8 6.4E-18 1.4E-22 154.3 19.8 261 122-389 182-494 (498)
142 KOG1538 Uncharacterized conser 99.8 1.3E-17 2.8E-22 158.4 22.4 248 127-390 13-293 (1081)
143 KOG0649 WD40 repeat protein [G 99.8 1.4E-17 3E-22 140.9 19.8 239 129-390 13-274 (325)
144 KOG2055 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 152.4 20.7 253 127-390 214-512 (514)
145 KOG1445 Tumor-specific antigen 99.8 8.8E-18 1.9E-22 158.7 19.3 151 235-390 627-798 (1012)
146 KOG2096 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 142.9 21.7 219 167-391 79-361 (420)
147 KOG2445 Nuclear pore complex c 99.8 6.2E-17 1.4E-21 141.2 22.5 203 171-391 10-257 (361)
148 KOG0650 WD40 repeat nucleolar 99.8 5.4E-18 1.2E-22 159.3 16.9 276 83-387 411-732 (733)
149 KOG0322 G-protein beta subunit 99.8 8.3E-18 1.8E-22 143.8 16.1 253 122-389 10-322 (323)
150 KOG0639 Transducin-like enhanc 99.8 5E-18 1.1E-22 156.5 15.5 215 152-392 439-665 (705)
151 KOG0307 Vesicle coat complex C 99.8 2.7E-18 5.8E-23 172.3 14.1 231 135-392 72-329 (1049)
152 KOG2919 Guanine nucleotide-bin 99.8 2.7E-17 5.8E-22 144.4 18.6 286 73-381 52-361 (406)
153 KOG0290 Conserved WD40 repeat- 99.8 3E-17 6.5E-22 142.2 17.5 241 138-393 58-321 (364)
154 KOG1274 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 157.4 23.1 237 124-373 11-282 (933)
155 KOG0650 WD40 repeat nucleolar 99.8 2.6E-17 5.7E-22 154.7 17.8 218 165-388 391-678 (733)
156 KOG0642 Cell-cycle nuclear pro 99.8 9E-18 2E-22 157.0 12.9 251 124-392 292-563 (577)
157 KOG4328 WD40 protein [Function 99.7 2.8E-17 6E-22 150.2 15.0 205 165-390 177-399 (498)
158 KOG4378 Nuclear protein COP1 [ 99.7 1.5E-16 3.2E-21 146.7 19.0 260 73-376 37-308 (673)
159 KOG0321 WD40 repeat-containing 99.7 7.6E-17 1.6E-21 152.7 17.6 223 147-392 68-349 (720)
160 KOG0303 Actin-binding protein 99.7 2.5E-16 5.4E-21 141.6 20.0 225 120-373 75-321 (472)
161 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 6.9E-15 1.5E-19 135.9 30.0 215 148-392 6-239 (300)
162 KOG1539 WD repeat protein [Gen 99.7 1.6E-16 3.4E-21 154.7 17.5 220 92-351 420-649 (910)
163 KOG1273 WD40 repeat protein [G 99.7 1.4E-15 3E-20 133.3 19.6 191 177-390 26-226 (405)
164 KOG2048 WD40 repeat protein [G 99.7 4.7E-15 1E-19 141.6 24.8 196 174-391 25-234 (691)
165 KOG1007 WD repeat protein TSSC 99.7 1.8E-15 4E-20 131.1 19.8 246 122-390 59-361 (370)
166 KOG2055 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 144.5 14.6 241 73-350 257-512 (514)
167 KOG1009 Chromatin assembly com 99.7 3.1E-15 6.7E-20 135.1 19.6 166 127-303 14-195 (434)
168 KOG2110 Uncharacterized conser 99.7 3.5E-14 7.5E-19 127.1 24.0 213 174-392 5-250 (391)
169 KOG0307 Vesicle coat complex C 99.7 4.6E-16 1E-20 156.4 12.4 248 71-353 65-330 (1049)
170 KOG0644 Uncharacterized conser 99.6 6.1E-16 1.3E-20 150.5 11.0 259 83-390 201-468 (1113)
171 KOG1188 WD40 repeat protein [G 99.6 4.2E-15 9.2E-20 131.6 15.1 244 140-389 41-345 (376)
172 KOG1034 Transcriptional repres 99.6 1.2E-15 2.5E-20 134.4 11.2 246 84-350 105-383 (385)
173 KOG1963 WD40 repeat protein [G 99.6 4.5E-14 9.7E-19 138.8 23.1 285 93-391 180-539 (792)
174 KOG1007 WD repeat protein TSSC 99.6 9.6E-15 2.1E-19 126.6 16.1 224 150-390 37-289 (370)
175 COG2319 FOG: WD40 repeat [Gene 99.6 1.6E-12 3.4E-17 124.2 32.8 280 87-391 126-443 (466)
176 KOG1310 WD40 repeat protein [G 99.6 5E-15 1.1E-19 138.3 14.1 206 165-393 41-306 (758)
177 COG2319 FOG: WD40 repeat [Gene 99.6 7.3E-13 1.6E-17 126.5 29.4 238 122-392 61-316 (466)
178 KOG1445 Tumor-specific antigen 99.6 5.1E-15 1.1E-19 140.3 12.8 224 152-392 602-846 (1012)
179 KOG0290 Conserved WD40 repeat- 99.6 8.2E-14 1.8E-18 121.0 18.5 233 123-386 93-361 (364)
180 KOG0649 WD40 repeat protein [G 99.6 6E-13 1.3E-17 113.0 22.6 269 76-387 16-313 (325)
181 KOG1587 Cytoplasmic dynein int 99.6 3.2E-13 6.9E-18 132.1 23.3 233 153-391 222-517 (555)
182 KOG1188 WD40 repeat protein [G 99.6 3.3E-14 7.2E-19 126.0 13.8 145 246-393 41-199 (376)
183 PRK11028 6-phosphogluconolacto 99.6 2.6E-12 5.6E-17 121.2 27.3 266 89-391 7-305 (330)
184 KOG2919 Guanine nucleotide-bin 99.6 1.2E-13 2.6E-18 121.6 16.3 220 83-341 122-361 (406)
185 KOG1587 Cytoplasmic dynein int 99.6 1.9E-13 4.1E-18 133.7 18.4 234 95-351 223-517 (555)
186 KOG4227 WD40 repeat protein [G 99.6 3.4E-13 7.4E-18 121.5 18.3 248 121-393 51-325 (609)
187 KOG1009 Chromatin assembly com 99.5 4.8E-13 1E-17 121.1 17.9 255 86-354 28-376 (434)
188 KOG0644 Uncharacterized conser 99.5 1E-14 2.2E-19 142.1 7.6 204 165-391 181-427 (1113)
189 KOG0642 Cell-cycle nuclear pro 99.5 5.1E-14 1.1E-18 132.2 11.7 222 84-314 306-572 (577)
190 KOG1517 Guanine nucleotide bin 99.5 8.7E-13 1.9E-17 131.9 20.2 266 86-391 1078-1382(1387)
191 KOG2110 Uncharacterized conser 99.5 8.4E-11 1.8E-15 105.7 30.2 212 128-351 7-249 (391)
192 KOG1334 WD40 repeat protein [G 99.5 1.4E-13 3.1E-18 127.1 12.1 263 122-391 138-467 (559)
193 PRK01742 tolB translocation pr 99.5 4.9E-12 1.1E-16 123.4 22.9 205 151-389 182-400 (429)
194 KOG1517 Guanine nucleotide bin 99.5 3.2E-12 7E-17 127.9 21.3 218 154-392 1087-1335(1387)
195 KOG4227 WD40 repeat protein [G 99.5 6.3E-13 1.4E-17 119.8 14.8 208 167-390 49-274 (609)
196 KOG1538 Uncharacterized conser 99.5 1.1E-12 2.5E-17 125.2 16.5 246 74-350 16-293 (1081)
197 KOG1963 WD40 repeat protein [G 99.5 1.1E-11 2.4E-16 122.2 22.7 253 129-393 18-378 (792)
198 KOG1409 Uncharacterized conser 99.5 2.6E-12 5.6E-17 114.2 15.2 287 86-391 38-395 (404)
199 KOG0771 Prolactin regulatory e 99.5 2.2E-12 4.7E-17 117.6 15.0 186 178-391 148-355 (398)
200 KOG1272 WD40-repeat-containing 99.4 2E-13 4.3E-18 125.5 8.2 207 176-388 131-360 (545)
201 PRK01742 tolB translocation pr 99.4 1.1E-11 2.4E-16 120.9 20.4 231 91-372 181-426 (429)
202 KOG1523 Actin-related protein 99.4 1.8E-11 3.9E-16 108.0 18.3 236 128-387 12-275 (361)
203 KOG2111 Uncharacterized conser 99.4 1.3E-10 2.8E-15 102.6 22.8 210 177-392 8-258 (346)
204 KOG2111 Uncharacterized conser 99.4 1.7E-10 3.8E-15 101.8 23.6 208 135-351 13-257 (346)
205 KOG1523 Actin-related protein 99.4 1.9E-11 4E-16 107.9 17.4 204 169-391 5-237 (361)
206 KOG1310 WD40 repeat protein [G 99.4 2.7E-12 5.7E-17 120.4 11.1 153 233-389 48-230 (758)
207 PRK11028 6-phosphogluconolacto 99.4 9.1E-10 2E-14 103.8 27.6 216 151-392 10-260 (330)
208 KOG0771 Prolactin regulatory e 99.3 1.2E-11 2.6E-16 112.8 12.6 169 130-304 148-355 (398)
209 KOG1524 WD40 repeat-containing 99.3 1.2E-11 2.6E-16 115.7 12.3 176 152-347 84-283 (737)
210 KOG2321 WD40 repeat protein [G 99.3 2.3E-10 4.9E-15 108.2 20.7 255 124-390 49-343 (703)
211 KOG1240 Protein kinase contain 99.3 2.9E-10 6.2E-15 115.8 22.6 227 165-392 1039-1336(1431)
212 KOG2139 WD40 repeat protein [G 99.3 1.1E-09 2.5E-14 98.2 22.6 274 73-390 101-431 (445)
213 PRK04922 tolB translocation pr 99.3 1.6E-09 3.6E-14 105.9 25.1 207 152-390 183-411 (433)
214 KOG1240 Protein kinase contain 99.3 1E-09 2.2E-14 111.9 23.4 260 125-388 1047-1431(1431)
215 KOG2139 WD40 repeat protein [G 99.3 1.3E-09 2.8E-14 97.9 21.4 227 128-380 100-365 (445)
216 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.4E-15 109.4 14.3 153 235-392 219-454 (636)
217 PRK03629 tolB translocation pr 99.3 5.4E-09 1.2E-13 102.0 26.5 210 152-390 178-406 (429)
218 PRK05137 tolB translocation pr 99.2 6.6E-09 1.4E-13 101.7 26.8 210 152-391 181-413 (435)
219 PRK02889 tolB translocation pr 99.2 5.8E-09 1.3E-13 101.8 24.3 199 153-383 176-394 (427)
220 KOG3881 Uncharacterized conser 99.2 1.5E-09 3.2E-14 98.4 18.3 197 171-392 102-322 (412)
221 PRK03629 tolB translocation pr 99.2 6.7E-09 1.4E-13 101.3 23.6 211 127-372 199-428 (429)
222 KOG3881 Uncharacterized conser 99.2 1.4E-09 3.1E-14 98.5 17.0 201 153-372 125-342 (412)
223 KOG1524 WD40 repeat-containing 99.2 2.7E-10 5.9E-15 106.8 12.6 111 233-351 102-217 (737)
224 KOG0974 WD-repeat protein WDR6 99.2 2.3E-10 5.1E-15 114.9 12.5 183 83-304 98-289 (967)
225 PRK04922 tolB translocation pr 99.2 9.7E-09 2.1E-13 100.4 23.6 232 93-371 183-432 (433)
226 KOG1272 WD40-repeat-containing 99.2 1.5E-10 3.2E-15 106.9 9.3 230 135-379 137-398 (545)
227 KOG0974 WD-repeat protein WDR6 99.1 2.1E-09 4.5E-14 108.2 17.5 196 174-392 87-290 (967)
228 PRK05137 tolB translocation pr 99.1 1.8E-08 3.9E-13 98.7 23.9 233 94-371 182-432 (435)
229 KOG0322 G-protein beta subunit 99.1 3.5E-09 7.7E-14 91.4 16.2 159 174-349 150-322 (323)
230 PF08662 eIF2A: Eukaryotic tra 99.1 1.3E-08 2.8E-13 88.1 19.3 126 256-390 38-179 (194)
231 KOG1334 WD40 repeat protein [G 99.1 5.1E-10 1.1E-14 103.9 10.7 205 164-388 132-364 (559)
232 PF02239 Cytochrom_D1: Cytochr 99.1 2.6E-08 5.5E-13 94.8 22.2 232 153-392 16-349 (369)
233 KOG2321 WD40 repeat protein [G 99.1 1.1E-08 2.5E-13 96.9 19.2 223 165-392 43-304 (703)
234 PF08662 eIF2A: Eukaryotic tra 99.1 2.1E-08 4.7E-13 86.7 19.7 112 235-357 59-185 (194)
235 KOG4497 Uncharacterized conser 99.1 1.4E-08 3.1E-13 90.3 17.8 235 152-390 70-391 (447)
236 KOG1064 RAVE (regulator of V-A 99.1 8.9E-10 1.9E-14 115.9 11.9 202 143-383 2220-2439(2439)
237 KOG2394 WD40 protein DMR-N9 [G 99.1 8E-10 1.7E-14 103.8 10.2 121 165-306 281-455 (636)
238 PRK00178 tolB translocation pr 99.0 2.2E-07 4.7E-12 91.0 26.8 208 154-390 180-406 (430)
239 PRK02889 tolB translocation pr 99.0 6.6E-08 1.4E-12 94.4 23.0 212 127-372 196-425 (427)
240 TIGR02800 propeller_TolB tol-p 99.0 3.5E-07 7.6E-12 89.1 26.3 207 151-389 168-396 (417)
241 KOG2315 Predicted translation 99.0 1.8E-07 4E-12 88.7 21.6 285 81-390 42-390 (566)
242 TIGR03300 assembly_YfgL outer 99.0 8.4E-07 1.8E-11 85.3 26.7 135 244-387 240-376 (377)
243 KOG1064 RAVE (regulator of V-A 98.9 4.4E-09 9.6E-14 110.9 11.1 188 171-392 2205-2400(2439)
244 TIGR02800 propeller_TolB tol-p 98.9 4.7E-07 1E-11 88.2 23.6 189 128-350 191-397 (417)
245 KOG4547 WD40 repeat-containing 98.9 9.8E-08 2.1E-12 91.1 17.7 196 183-391 2-221 (541)
246 KOG0309 Conserved WD40 repeat- 98.9 2E-08 4.4E-13 97.8 13.1 202 166-391 106-340 (1081)
247 KOG4547 WD40 repeat-containing 98.9 1.2E-06 2.6E-11 83.8 24.0 121 230-352 97-222 (541)
248 KOG1354 Serine/threonine prote 98.8 1.9E-07 4.1E-12 83.7 16.0 255 128-390 27-359 (433)
249 PRK04792 tolB translocation pr 98.8 2.8E-06 6.1E-11 83.4 26.0 206 154-390 199-425 (448)
250 KOG0280 Uncharacterized conser 98.8 5.6E-08 1.2E-12 85.3 12.3 216 152-390 94-333 (339)
251 KOG2695 WD40 repeat protein [G 98.8 1.7E-08 3.7E-13 90.3 8.6 133 235-371 252-402 (425)
252 PF10282 Lactonase: Lactonase, 98.8 3.5E-05 7.7E-10 73.1 31.9 241 150-391 10-323 (345)
253 PRK01029 tolB translocation pr 98.8 2.9E-06 6.3E-11 82.7 25.0 213 154-392 166-405 (428)
254 KOG1275 PAB-dependent poly(A) 98.8 1.9E-07 4.2E-12 93.1 16.3 152 237-393 179-345 (1118)
255 PRK00178 tolB translocation pr 98.8 2.5E-06 5.4E-11 83.5 23.5 210 128-371 200-427 (430)
256 PF13360 PQQ_2: PQQ-like domai 98.7 1.2E-05 2.5E-10 71.8 25.3 214 152-393 2-233 (238)
257 KOG4497 Uncharacterized conser 98.7 2.9E-07 6.2E-12 82.1 13.9 182 179-388 13-238 (447)
258 KOG4532 WD40-like repeat conta 98.7 2.1E-06 4.6E-11 74.7 18.7 209 154-392 53-284 (344)
259 KOG4190 Uncharacterized conser 98.7 3.9E-08 8.5E-13 92.9 8.7 159 230-392 730-908 (1034)
260 PRK04792 tolB translocation pr 98.7 4.5E-06 9.8E-11 81.9 23.2 213 128-372 219-447 (448)
261 COG5354 Uncharacterized protei 98.7 6.4E-06 1.4E-10 77.6 21.9 247 128-391 34-396 (561)
262 KOG1409 Uncharacterized conser 98.7 8.8E-07 1.9E-11 79.5 15.2 223 164-392 14-272 (404)
263 KOG0280 Uncharacterized conser 98.7 3.1E-07 6.7E-12 80.8 11.8 133 239-373 125-265 (339)
264 TIGR02658 TTQ_MADH_Hv methylam 98.7 7.2E-05 1.6E-09 70.1 28.4 232 153-392 27-332 (352)
265 TIGR03300 assembly_YfgL outer 98.7 3.6E-05 7.8E-10 74.0 27.0 229 151-392 73-340 (377)
266 KOG4190 Uncharacterized conser 98.6 7E-08 1.5E-12 91.3 6.6 209 165-388 726-946 (1034)
267 COG2706 3-carboxymuconate cycl 98.6 0.00018 4E-09 65.5 28.1 238 152-392 15-323 (346)
268 PF02239 Cytochrom_D1: Cytochr 98.5 1.5E-05 3.2E-10 76.0 20.5 141 246-391 6-159 (369)
269 PRK01029 tolB translocation pr 98.5 3.2E-05 7E-10 75.4 23.2 210 135-372 192-425 (428)
270 KOG0309 Conserved WD40 repeat- 98.5 1.5E-06 3.2E-11 85.2 13.3 215 129-373 27-257 (1081)
271 PLN02919 haloacid dehalogenase 98.5 0.00017 3.8E-09 77.7 30.5 229 152-392 589-890 (1057)
272 COG4946 Uncharacterized protei 98.5 0.00016 3.5E-09 67.9 25.5 117 171-307 356-481 (668)
273 KOG2695 WD40 repeat protein [G 98.5 5.4E-07 1.2E-11 80.9 9.0 146 150-315 231-388 (425)
274 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00022 4.7E-09 66.9 26.8 246 93-360 26-340 (352)
275 KOG3914 WD repeat protein WDR4 98.5 6E-06 1.3E-10 75.7 15.6 80 233-312 149-232 (390)
276 KOG1354 Serine/threonine prote 98.5 3E-06 6.5E-11 76.2 13.1 208 173-392 24-303 (433)
277 KOG4714 Nucleoporin [Nuclear s 98.5 7.2E-07 1.6E-11 77.2 8.8 148 240-391 96-255 (319)
278 KOG2041 WD40 repeat protein [G 98.5 1.5E-05 3.2E-10 78.1 18.0 280 72-390 16-337 (1189)
279 KOG2314 Translation initiation 98.4 3.6E-05 7.8E-10 73.5 18.3 256 128-390 251-573 (698)
280 KOG2315 Predicted translation 98.4 8.6E-05 1.9E-09 71.0 20.5 126 235-371 270-410 (566)
281 PRK04043 tolB translocation pr 98.3 0.00064 1.4E-08 66.1 26.8 205 154-390 170-400 (419)
282 PF10282 Lactonase: Lactonase, 98.3 0.0015 3.3E-08 61.9 28.8 233 135-369 44-345 (345)
283 KOG4714 Nucleoporin [Nuclear s 98.3 3.6E-06 7.8E-11 73.0 9.6 67 238-304 182-255 (319)
284 PRK11138 outer membrane biogen 98.3 0.00041 8.9E-09 67.1 24.6 135 245-389 256-393 (394)
285 KOG3914 WD repeat protein WDR4 98.3 1.3E-05 2.9E-10 73.5 13.0 142 245-393 74-226 (390)
286 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.6E-11 53.2 5.7 36 165-200 2-39 (39)
287 COG4946 Uncharacterized protei 98.3 0.003 6.6E-08 59.7 27.7 135 233-373 357-500 (668)
288 PF15492 Nbas_N: Neuroblastoma 98.3 0.00054 1.2E-08 60.7 21.7 151 238-391 46-260 (282)
289 PF00400 WD40: WD domain, G-be 98.3 2.7E-06 5.9E-11 52.7 5.4 37 265-301 1-39 (39)
290 PF04762 IKI3: IKI3 family; I 98.2 0.002 4.3E-08 68.5 29.3 148 238-389 212-378 (928)
291 KOG1912 WD40 repeat protein [G 98.2 0.00036 7.9E-09 69.3 20.7 215 154-392 36-306 (1062)
292 PF04762 IKI3: IKI3 family; I 98.2 0.00033 7.1E-09 74.3 22.2 225 130-392 213-458 (928)
293 KOG2041 WD40 repeat protein [G 98.2 1.1E-05 2.4E-10 79.0 9.9 153 235-390 14-186 (1189)
294 PF08450 SGL: SMP-30/Gluconola 98.1 0.0065 1.4E-07 54.5 27.5 198 153-378 22-244 (246)
295 COG5170 CDC55 Serine/threonine 98.1 2.2E-05 4.9E-10 69.8 9.2 209 173-392 25-311 (460)
296 PF13360 PQQ_2: PQQ-like domai 98.1 0.0012 2.6E-08 58.7 20.7 146 244-392 35-193 (238)
297 PLN02919 haloacid dehalogenase 98.1 0.0037 7.9E-08 67.7 27.3 192 153-354 646-892 (1057)
298 KOG4532 WD40-like repeat conta 98.0 0.00021 4.6E-09 62.5 14.4 143 245-392 84-235 (344)
299 KOG1645 RING-finger-containing 98.0 0.00033 7.1E-09 64.6 16.3 87 155-264 175-267 (463)
300 COG2706 3-carboxymuconate cycl 98.0 0.0052 1.1E-07 56.2 23.7 219 130-370 92-345 (346)
301 KOG2066 Vacuolar assembly/sort 98.0 2.7E-05 5.9E-10 77.4 9.8 149 235-393 39-190 (846)
302 KOG0882 Cyclophilin-related pe 98.0 4.6E-05 9.9E-10 71.0 10.0 224 127-358 10-313 (558)
303 KOG2314 Translation initiation 98.0 0.0011 2.4E-08 63.6 19.1 249 128-390 212-525 (698)
304 PRK04043 tolB translocation pr 98.0 0.0037 8E-08 60.8 23.3 188 131-351 192-401 (419)
305 KOG1275 PAB-dependent poly(A) 98.0 0.00013 2.8E-09 73.6 13.2 167 155-349 159-341 (1118)
306 PRK11138 outer membrane biogen 97.9 0.0048 1E-07 59.7 23.8 138 245-392 205-355 (394)
307 PF15492 Nbas_N: Neuroblastoma 97.9 0.0014 3E-08 58.2 17.5 34 326-360 236-269 (282)
308 COG5170 CDC55 Serine/threonine 97.9 0.00056 1.2E-08 61.1 15.0 255 128-390 28-367 (460)
309 PF07433 DUF1513: Protein of u 97.9 0.01 2.2E-07 54.2 22.7 219 154-380 29-276 (305)
310 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.015 3.2E-07 51.2 22.6 102 85-207 24-128 (354)
311 KOG1832 HIV-1 Vpr-binding prot 97.9 9.4E-06 2E-10 81.2 3.4 191 164-390 1091-1291(1516)
312 KOG2066 Vacuolar assembly/sort 97.8 0.00037 8.1E-09 69.5 13.7 181 174-390 39-233 (846)
313 PF11768 DUF3312: Protein of u 97.8 0.00024 5.3E-09 68.8 11.4 69 322-392 262-331 (545)
314 PF07433 DUF1513: Protein of u 97.7 0.005 1.1E-07 56.1 18.5 156 134-291 57-274 (305)
315 KOG0882 Cyclophilin-related pe 97.7 0.0005 1.1E-08 64.3 11.5 198 173-392 8-233 (558)
316 KOG1832 HIV-1 Vpr-binding prot 97.7 2.8E-05 6.2E-10 77.9 3.1 202 124-373 1099-1313(1516)
317 PF08450 SGL: SMP-30/Gluconola 97.6 0.021 4.6E-07 51.2 21.6 147 240-392 4-166 (246)
318 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0056 1.2E-07 46.9 14.6 93 246-346 16-110 (111)
319 KOG1912 WD40 repeat protein [G 97.6 0.0023 4.9E-08 63.9 14.5 148 238-388 18-184 (1062)
320 PF08553 VID27: VID27 cytoplas 97.5 0.0024 5.2E-08 65.7 14.4 138 248-390 497-647 (794)
321 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.009 2E-07 45.8 14.0 98 278-386 2-110 (111)
322 PF08596 Lgl_C: Lethal giant l 97.5 0.088 1.9E-06 50.6 23.9 215 176-391 3-291 (395)
323 KOG3621 WD40 repeat-containing 97.4 0.0077 1.7E-07 59.7 16.2 99 83-197 44-147 (726)
324 PF11768 DUF3312: Protein of u 97.4 0.021 4.6E-07 55.7 18.7 71 233-305 257-331 (545)
325 KOG2114 Vacuolar assembly/sort 97.4 0.0057 1.2E-07 61.9 15.1 154 237-392 27-203 (933)
326 cd00216 PQQ_DH Dehydrogenases 97.4 0.092 2E-06 52.3 23.9 122 247-378 303-456 (488)
327 KOG1920 IkappaB kinase complex 97.3 0.061 1.3E-06 56.8 22.2 144 240-389 200-364 (1265)
328 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.029 6.3E-07 49.4 16.8 134 245-384 23-159 (354)
329 PF03178 CPSF_A: CPSF A subuni 97.3 0.16 3.5E-06 47.6 23.3 150 233-386 86-261 (321)
330 COG5354 Uncharacterized protei 97.3 0.021 4.5E-07 54.6 16.4 203 157-373 16-234 (561)
331 KOG1645 RING-finger-containing 97.2 0.0025 5.4E-08 59.0 9.8 75 233-308 191-271 (463)
332 PRK02888 nitrous-oxide reducta 97.2 0.1 2.2E-06 52.3 21.4 100 285-391 288-405 (635)
333 PF03178 CPSF_A: CPSF A subuni 97.2 0.023 5E-07 53.3 16.1 130 255-391 62-203 (321)
334 PF08596 Lgl_C: Lethal giant l 97.1 0.055 1.2E-06 52.0 18.5 195 162-373 74-318 (395)
335 cd00216 PQQ_DH Dehydrogenases 97.1 0.25 5.4E-06 49.2 23.8 139 245-393 228-427 (488)
336 KOG2114 Vacuolar assembly/sort 97.0 0.21 4.6E-06 51.0 21.8 205 135-359 31-252 (933)
337 KOG3621 WD40 repeat-containing 96.9 0.0049 1.1E-07 61.0 8.7 109 279-391 39-155 (726)
338 KOG1008 Uncharacterized conser 96.8 0.00071 1.5E-08 66.1 2.6 224 140-389 71-334 (783)
339 PF05096 Glu_cyclase_2: Glutam 96.8 0.38 8.3E-06 43.1 21.5 190 165-378 34-249 (264)
340 smart00320 WD40 WD40 repeats. 96.7 0.0044 9.6E-08 36.4 4.9 36 266-301 3-40 (40)
341 KOG2395 Protein involved in va 96.7 0.033 7.2E-07 53.7 12.5 139 247-390 348-500 (644)
342 smart00320 WD40 WD40 repeats. 96.6 0.0061 1.3E-07 35.8 5.1 34 165-198 3-36 (40)
343 PHA02713 hypothetical protein; 96.6 0.2 4.3E-06 50.8 18.4 143 242-392 349-535 (557)
344 PRK02888 nitrous-oxide reducta 96.6 0.38 8.2E-06 48.4 19.5 176 153-351 215-405 (635)
345 COG3490 Uncharacterized protei 96.5 0.072 1.6E-06 47.7 12.7 166 134-301 120-346 (366)
346 PF06977 SdiA-regulated: SdiA- 96.5 0.58 1.3E-05 41.9 25.1 198 168-387 15-247 (248)
347 KOG3617 WD40 and TPR repeat-co 96.5 0.082 1.8E-06 53.9 14.2 105 135-263 23-131 (1416)
348 PF04841 Vps16_N: Vps16, N-ter 96.5 0.89 1.9E-05 44.2 21.3 150 236-390 81-246 (410)
349 KOG2444 WD40 repeat protein [G 96.4 0.0086 1.9E-07 51.6 6.2 140 248-391 33-178 (238)
350 KOG4441 Proteins containing BT 96.3 0.21 4.6E-06 50.6 16.4 214 149-390 297-546 (571)
351 PF00780 CNH: CNH domain; Int 96.2 0.48 1E-05 43.1 17.2 141 244-391 6-166 (275)
352 PF06433 Me-amine-dh_H: Methyl 96.2 1.1 2.4E-05 41.8 26.7 232 154-392 18-322 (342)
353 KOG4640 Anaphase-promoting com 96.2 0.02 4.4E-07 56.2 8.0 66 326-393 27-95 (665)
354 PF12234 Rav1p_C: RAVE protein 96.0 0.33 7.2E-06 49.1 15.7 110 276-388 30-154 (631)
355 PHA02713 hypothetical protein; 95.9 0.3 6.5E-06 49.5 15.3 92 255-353 432-536 (557)
356 PF12894 Apc4_WD40: Anaphase-p 95.9 0.042 9.1E-07 35.3 5.9 31 361-391 11-42 (47)
357 COG0823 TolB Periplasmic compo 95.9 0.53 1.1E-05 45.8 16.3 179 167-373 185-381 (425)
358 KOG4640 Anaphase-promoting com 95.8 0.054 1.2E-06 53.3 9.3 91 276-371 21-115 (665)
359 KOG1008 Uncharacterized conser 95.8 0.0024 5.2E-08 62.5 0.1 149 235-388 56-223 (783)
360 KOG3617 WD40 and TPR repeat-co 95.5 1 2.2E-05 46.3 16.6 69 128-202 61-131 (1416)
361 PF00930 DPPIV_N: Dipeptidyl p 95.4 1.6 3.4E-05 41.5 17.7 266 93-380 22-348 (353)
362 PF14727 PHTB1_N: PTHB1 N-term 95.3 1.9 4.2E-05 41.7 17.7 143 246-389 38-203 (418)
363 PF00930 DPPIV_N: Dipeptidyl p 95.2 3 6.5E-05 39.6 21.7 233 154-390 24-313 (353)
364 KOG1920 IkappaB kinase complex 95.1 4.2 9.2E-05 43.7 20.4 106 279-390 199-322 (1265)
365 PF04053 Coatomer_WDAD: Coatom 95.1 3.7 8.1E-05 40.2 25.3 203 168-390 26-262 (443)
366 KOG2079 Vacuolar assembly/sort 94.9 0.15 3.2E-06 53.5 9.2 109 236-348 90-201 (1206)
367 smart00356 ZnF_C3H1 zinc finge 94.9 0.015 3.3E-07 32.3 1.3 23 36-58 3-26 (27)
368 KOG2444 WD40 repeat protein [G 94.8 0.11 2.3E-06 45.1 6.8 103 245-352 70-179 (238)
369 PF08553 VID27: VID27 cytoplas 94.8 1.2 2.6E-05 46.4 15.5 132 151-302 502-646 (794)
370 KOG4441 Proteins containing BT 94.5 2.5 5.4E-05 43.0 16.9 187 138-352 333-548 (571)
371 PHA03098 kelch-like protein; P 94.4 2.4 5.2E-05 42.8 16.8 143 243-392 341-513 (534)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 6.8 0.00015 39.5 25.5 62 295-362 441-502 (527)
373 COG3823 Glutamine cyclotransfe 94.1 2.5 5.3E-05 36.4 13.2 174 185-378 55-247 (262)
374 PF04053 Coatomer_WDAD: Coatom 93.9 2.6 5.6E-05 41.3 15.0 135 238-390 35-173 (443)
375 COG3391 Uncharacterized conser 93.7 6.9 0.00015 37.6 18.7 139 247-391 88-240 (381)
376 KOG2079 Vacuolar assembly/sort 93.3 0.39 8.4E-06 50.5 8.5 108 276-389 90-202 (1206)
377 PHA02790 Kelch-like protein; P 93.2 5.9 0.00013 39.4 16.7 142 243-392 317-472 (480)
378 COG0823 TolB Periplasmic compo 93.0 2 4.3E-05 41.9 12.7 92 295-392 218-314 (425)
379 PF00780 CNH: CNH domain; Int 93.0 6.8 0.00015 35.4 24.6 137 246-392 105-257 (275)
380 PF00642 zf-CCCH: Zinc finger 92.7 0.02 4.4E-07 31.9 -0.8 24 36-59 2-27 (27)
381 KOG2395 Protein involved in va 92.7 1.7 3.7E-05 42.5 11.2 148 184-350 343-500 (644)
382 PHA03098 kelch-like protein; P 92.4 10 0.00022 38.2 17.5 105 244-353 389-514 (534)
383 PHA02790 Kelch-like protein; P 92.3 9.5 0.00021 38.0 16.9 103 242-352 360-472 (480)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.3 14 0.0003 37.3 22.8 150 242-392 117-335 (527)
385 PF05694 SBP56: 56kDa selenium 92.3 4.7 0.0001 38.9 13.6 224 154-379 99-393 (461)
386 COG3386 Gluconolactonase [Carb 92.2 9.7 0.00021 35.4 24.4 208 154-381 48-277 (307)
387 PF08728 CRT10: CRT10; InterP 92.1 5.7 0.00012 40.9 14.8 102 285-389 114-245 (717)
388 PF15390 DUF4613: Domain of un 92.0 8.9 0.00019 38.3 15.4 147 236-390 20-186 (671)
389 PF05694 SBP56: 56kDa selenium 92.0 2.2 4.7E-05 41.1 11.0 138 255-392 157-344 (461)
390 COG5276 Uncharacterized conser 91.7 10 0.00022 34.6 19.0 147 236-391 87-242 (370)
391 PF02897 Peptidase_S9_N: Proly 91.4 14 0.00031 35.7 28.7 238 128-392 125-406 (414)
392 PF02333 Phytase: Phytase; In 91.3 14 0.0003 35.3 19.4 144 245-391 68-238 (381)
393 COG5167 VID27 Protein involved 91.3 3.5 7.6E-05 40.3 11.6 138 248-390 483-632 (776)
394 KOG4499 Ca2+-binding protein R 91.2 6 0.00013 34.8 12.0 139 135-286 116-264 (310)
395 TIGR02276 beta_rpt_yvtn 40-res 91.1 1.2 2.7E-05 27.2 6.1 41 329-369 1-41 (42)
396 PF12894 Apc4_WD40: Anaphase-p 90.8 0.71 1.5E-05 29.6 4.6 29 324-354 16-44 (47)
397 COG3386 Gluconolactonase [Carb 90.6 12 0.00025 34.8 14.4 116 156-285 144-264 (307)
398 COG3391 Uncharacterized conser 89.6 20 0.00043 34.4 22.8 141 245-391 127-284 (381)
399 KOG1896 mRNA cleavage and poly 89.6 35 0.00076 37.2 18.3 132 254-392 1064-1215(1366)
400 PF07569 Hira: TUP1-like enhan 89.4 2.1 4.5E-05 37.7 8.1 61 328-390 19-95 (219)
401 KOG4499 Ca2+-binding protein R 89.4 15 0.00032 32.5 13.1 52 328-380 220-275 (310)
402 PF14781 BBS2_N: Ciliary BBSom 89.1 10 0.00022 30.3 11.3 55 334-389 66-124 (136)
403 PRK13616 lipoprotein LpqB; Pro 88.7 17 0.00037 37.2 15.1 64 127-195 350-417 (591)
404 KOG1040 Polyadenylation factor 88.2 0.3 6.5E-06 45.2 2.0 26 34-59 74-100 (325)
405 PF10168 Nup88: Nuclear pore c 87.9 38 0.00083 35.5 22.0 87 175-264 85-180 (717)
406 PRK13616 lipoprotein LpqB; Pro 87.8 13 0.00029 37.9 13.7 58 325-386 402-472 (591)
407 PF06433 Me-amine-dh_H: Methyl 87.5 25 0.00054 33.0 24.4 206 149-360 63-330 (342)
408 PF06977 SdiA-regulated: SdiA- 87.1 22 0.00048 31.9 17.4 154 233-390 19-201 (248)
409 PF12234 Rav1p_C: RAVE protein 86.3 26 0.00056 35.9 14.5 98 248-350 44-156 (631)
410 KOG2247 WD40 repeat-containing 86.2 0.067 1.4E-06 51.3 -3.4 133 245-384 46-182 (615)
411 PF10313 DUF2415: Uncharacteri 85.4 3.3 7.1E-05 25.9 4.9 29 363-391 2-34 (43)
412 PF14583 Pectate_lyase22: Olig 85.2 36 0.00078 32.5 15.9 146 245-393 47-225 (386)
413 TIGR03074 PQQ_membr_DH membran 85.1 22 0.00048 37.5 13.8 112 245-359 194-353 (764)
414 PF07569 Hira: TUP1-like enhan 84.2 8.4 0.00018 33.9 9.0 67 237-304 14-96 (219)
415 KOG1897 Damage-specific DNA bi 83.7 67 0.0014 34.4 23.4 133 255-390 470-613 (1096)
416 PF14761 HPS3_N: Hermansky-Pud 83.4 30 0.00064 30.2 13.7 109 277-390 19-163 (215)
417 COG5276 Uncharacterized conser 82.2 41 0.00088 30.9 24.2 180 168-353 35-244 (370)
418 COG5167 VID27 Protein involved 82.1 24 0.00052 34.8 11.5 98 246-350 528-632 (776)
419 TIGR03548 mutarot_permut cycli 81.7 45 0.00097 31.0 15.0 107 243-353 71-197 (323)
420 KOG1900 Nuclear pore complex, 81.5 39 0.00085 37.1 13.9 136 252-393 96-275 (1311)
421 KOG4460 Nuclear pore complex, 79.6 69 0.0015 31.9 13.8 113 154-269 62-204 (741)
422 PF10168 Nup88: Nuclear pore c 79.6 47 0.001 34.8 13.7 30 362-391 147-180 (717)
423 KOG3522 Predicted guanine nucl 79.4 87 0.0019 32.9 16.1 70 236-306 627-700 (925)
424 KOG3630 Nuclear pore complex, 78.9 7.7 0.00017 41.6 7.7 120 248-373 117-255 (1405)
425 PF14583 Pectate_lyase22: Olig 78.1 66 0.0014 30.8 24.5 65 326-391 289-382 (386)
426 KOG1897 Damage-specific DNA bi 78.1 1E+02 0.0022 33.1 21.4 110 235-350 829-942 (1096)
427 PF14870 PSII_BNR: Photosynthe 77.7 60 0.0013 30.1 24.6 145 236-387 145-301 (302)
428 COG4247 Phy 3-phytase (myo-ino 76.8 56 0.0012 29.3 15.6 146 246-394 68-236 (364)
429 smart00564 PQQ beta-propeller 76.4 9.6 0.00021 21.6 4.7 26 245-270 6-31 (33)
430 KOG4460 Nuclear pore complex, 75.6 51 0.0011 32.7 11.6 30 363-392 167-200 (741)
431 TIGR02604 Piru_Ver_Nterm putat 75.1 78 0.0017 30.2 16.5 121 256-377 48-200 (367)
432 PF02897 Peptidase_S9_N: Proly 74.7 84 0.0018 30.3 18.5 96 255-352 150-262 (414)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 74.6 38 0.00082 32.9 10.7 83 275-359 307-407 (415)
434 PF08728 CRT10: CRT10; InterP 74.3 67 0.0015 33.4 12.8 104 245-349 114-245 (717)
435 PF05096 Glu_cyclase_2: Glutam 74.1 68 0.0015 29.0 20.1 116 236-359 45-166 (264)
436 PF11715 Nup160: Nucleoporin N 73.2 21 0.00045 36.2 9.2 27 285-311 230-256 (547)
437 PF11715 Nup160: Nucleoporin N 72.5 25 0.00055 35.6 9.6 28 331-358 229-256 (547)
438 PF12657 TFIIIC_delta: Transcr 71.9 33 0.00071 28.8 8.7 28 363-390 87-121 (173)
439 PF12341 DUF3639: Protein of u 71.1 11 0.00024 20.9 3.6 24 237-260 3-26 (27)
440 PF10313 DUF2415: Uncharacteri 70.8 23 0.0005 22.2 5.4 28 237-264 2-34 (43)
441 COG3292 Predicted periplasmic 69.7 45 0.00099 33.4 9.9 145 234-386 163-314 (671)
442 KOG1916 Nuclear protein, conta 69.1 0.65 1.4E-05 48.1 -2.6 141 149-303 201-374 (1283)
443 COG5084 YTH1 Cleavage and poly 68.9 4 8.6E-05 37.1 2.5 30 34-63 101-131 (285)
444 PF04841 Vps16_N: Vps16, N-ter 68.6 1.2E+02 0.0026 29.5 24.2 47 154-203 62-110 (410)
445 KOG2280 Vacuolar assembly/sort 68.4 1.6E+02 0.0034 30.8 13.9 27 237-263 85-112 (829)
446 PF12768 Rax2: Cortical protei 68.3 89 0.0019 28.6 11.2 100 255-356 16-129 (281)
447 PF15390 DUF4613: Domain of un 67.7 1.5E+02 0.0032 30.2 16.4 143 234-379 55-220 (671)
448 PF13570 PQQ_3: PQQ-like domai 67.3 15 0.00033 22.1 4.3 23 281-303 17-39 (40)
449 PF01011 PQQ: PQQ enzyme repea 67.2 17 0.00036 21.8 4.4 26 247-272 2-27 (38)
450 PF10647 Gmad1: Lipoprotein Lp 67.2 95 0.0021 27.8 14.6 106 277-388 25-142 (253)
451 KOG2247 WD40 repeat-containing 67.1 1.2 2.5E-05 43.2 -1.3 223 135-388 42-278 (615)
452 PF10395 Utp8: Utp8 family; I 66.1 1.7E+02 0.0037 30.3 17.3 148 235-391 129-306 (670)
453 PLN02153 epithiospecifier prot 65.9 1.2E+02 0.0026 28.5 15.7 13 342-354 217-229 (341)
454 KOG1916 Nuclear protein, conta 65.8 8.5 0.00018 40.3 4.4 57 245-302 195-264 (1283)
455 PF14781 BBS2_N: Ciliary BBSom 65.6 69 0.0015 25.7 13.0 104 247-355 12-130 (136)
456 PF10650 zf-C3H1: Putative zin 65.1 2.9 6.3E-05 22.2 0.5 20 39-58 2-22 (23)
457 TIGR03548 mutarot_permut cycli 64.8 1.2E+02 0.0026 28.1 19.4 63 244-306 123-197 (323)
458 PF14608 zf-CCCH_2: Zinc finge 64.0 2.9 6.4E-05 21.0 0.4 16 40-57 2-18 (19)
459 PF07676 PD40: WD40-like Beta 63.0 17 0.00037 21.6 3.9 24 324-347 13-38 (39)
460 COG3490 Uncharacterized protei 62.0 1.3E+02 0.0028 27.6 18.7 222 154-388 92-346 (366)
461 PF08801 Nucleoporin_N: Nup133 62.0 1.6E+02 0.0034 28.6 14.8 29 363-391 191-220 (422)
462 PF14655 RAB3GAP2_N: Rab3 GTPa 61.8 61 0.0013 31.5 9.2 69 325-394 313-402 (415)
463 TIGR03074 PQQ_membr_DH membran 60.6 2.3E+02 0.0051 30.1 24.4 147 244-392 259-479 (764)
464 PLN02153 epithiospecifier prot 56.3 1.7E+02 0.0038 27.3 20.1 11 343-353 277-287 (341)
465 KOG3630 Nuclear pore complex, 53.8 50 0.0011 35.9 7.5 100 290-389 119-227 (1405)
466 PF14870 PSII_BNR: Photosynthe 53.8 1.9E+02 0.0041 26.9 21.3 193 172-388 14-213 (302)
467 KOG4791 Uncharacterized conser 53.7 3.7 8.1E-05 39.4 -0.4 25 36-60 31-55 (667)
468 TIGR02276 beta_rpt_yvtn 40-res 52.9 47 0.001 19.7 5.4 35 248-283 7-41 (42)
469 PRK10115 protease 2; Provision 52.4 3E+02 0.0065 28.9 27.3 65 127-195 127-192 (686)
470 PF14761 HPS3_N: Hermansky-Pud 51.8 1.2E+02 0.0026 26.5 8.4 43 339-381 35-80 (215)
471 PF14779 BBS1: Ciliary BBSome 51.7 1.1E+02 0.0024 27.5 8.5 71 274-347 175-255 (257)
472 KOG1898 Splicing factor 3b, su 48.1 4.1E+02 0.0089 29.1 19.7 132 254-391 911-1049(1205)
473 COG4590 ABC-type uncharacteriz 47.9 1.6E+02 0.0034 28.9 9.2 103 285-392 280-388 (733)
474 PLN02193 nitrile-specifier pro 47.8 2.9E+02 0.0063 27.3 17.6 106 244-354 228-355 (470)
475 PF12768 Rax2: Cortical protei 47.7 2.3E+02 0.0049 26.0 11.6 59 151-210 14-80 (281)
476 PLN02193 nitrile-specifier pro 47.4 2.9E+02 0.0064 27.3 19.1 106 244-354 278-414 (470)
477 PF14779 BBS1: Ciliary BBSome 46.6 1.2E+02 0.0025 27.4 7.8 57 331-387 194-255 (257)
478 COG1520 FOG: WD40-like repeat 45.1 2.8E+02 0.006 26.3 15.7 110 245-358 111-225 (370)
479 smart00036 CNH Domain found in 44.2 1.4E+02 0.0031 27.5 8.5 56 334-390 15-73 (302)
480 KOG1900 Nuclear pore complex, 43.6 82 0.0018 34.8 7.4 96 292-390 96-205 (1311)
481 COG4880 Secreted protein conta 43.6 2.4E+02 0.0052 27.5 9.6 92 256-352 407-505 (603)
482 KOG1763 Uncharacterized conser 41.6 5.9 0.00013 35.7 -1.0 44 16-63 75-119 (343)
483 PF10433 MMS1_N: Mono-function 40.2 3.9E+02 0.0085 26.6 20.8 191 174-371 255-503 (504)
484 PF01731 Arylesterase: Arylest 40.1 1.5E+02 0.0032 21.7 6.4 48 342-391 36-85 (86)
485 COG3204 Uncharacterized protei 38.9 3.2E+02 0.0069 25.3 17.5 154 235-391 85-264 (316)
486 PF08309 LVIVD: LVIVD repeat; 36.0 1.1E+02 0.0023 19.0 5.2 31 278-308 4-34 (42)
487 TIGR03118 PEPCTERM_chp_1 conse 35.6 3.1E+02 0.0067 25.5 8.8 74 314-388 17-116 (336)
488 COG1520 FOG: WD40-like repeat 35.4 3.9E+02 0.0085 25.3 16.4 110 245-360 68-181 (370)
489 TIGR03054 photo_alph_chp1 puta 35.3 1.9E+02 0.0042 23.2 6.7 64 246-309 42-119 (135)
490 KOG2377 Uncharacterized conser 35.2 3.1E+02 0.0067 27.0 9.0 70 325-394 28-100 (657)
491 PF01436 NHL: NHL repeat; Int 35.1 81 0.0018 17.3 4.3 23 364-386 4-27 (28)
492 COG3823 Glutamine cyclotransfe 34.6 3.2E+02 0.0069 24.0 12.5 75 235-309 130-210 (262)
493 COG3292 Predicted periplasmic 34.5 4.6E+02 0.01 26.7 10.3 103 174-298 164-270 (671)
494 PF07995 GSDH: Glucose / Sorbo 33.9 4E+02 0.0087 24.9 12.6 24 278-301 4-28 (331)
495 TIGR02608 delta_60_rpt delta-6 33.3 1.5E+02 0.0032 19.7 4.9 30 363-392 2-37 (55)
496 PF09826 Beta_propel: Beta pro 31.6 5.3E+02 0.011 26.0 10.7 92 241-337 18-137 (521)
497 KOG1896 mRNA cleavage and poly 31.5 7.9E+02 0.017 27.6 15.6 115 237-359 628-752 (1366)
498 PF03088 Str_synth: Strictosid 31.0 2.2E+02 0.0047 21.0 7.1 47 338-384 33-81 (89)
499 COG3204 Uncharacterized protei 30.8 4.4E+02 0.0094 24.4 22.2 197 170-387 81-309 (316)
500 TIGR03032 conserved hypothetic 30.8 4.5E+02 0.0098 24.6 15.8 145 156-325 114-312 (335)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-44 Score=315.54 Aligned_cols=284 Identities=21% Similarity=0.319 Sum_probs=256.1
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
++..++|||+|.|+|+||+++..... ...||+..|-+++ |+|++.+||++|.+| .|++||.++
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~------------t~KgH~~WVlcva-wsPDgk~iASG~~dg----~I~lwdpkt 188 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLF------------TCKGHKNWVLCVA-WSPDGKKIASGSKDG----SIRLWDPKT 188 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcce------------eecCCccEEEEEE-ECCCcchhhccccCC----eEEEecCCC
Confidence 78899999999999999999776532 5779999999999 999999999999888 999999999
Q ss_pred CceEEEEecccCCCeEEEEecC-----CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC-EEEEEecC-
Q 016134 163 GLTMLAKLEGHEKAVSGIALPL-----RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE-MLFAGAQD- 232 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~-----~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~~- 232 (394)
+.+....|.+|+..|++|+|.| ..++|++++.||. |||+..+.++ .+.+|..+|+++.|..+ .+++++.|
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr 268 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR 268 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence 9999999999999999999965 6789999999999 7999999887 78899999999999966 99999988
Q ss_pred -----------------CCCCCEEEEEec-------------CC-------------------------eEEEEeCCCeE
Q 016134 233 -----------------GHTRPVTCLAVG-------------RS-------------------------RLCSGSMDNTI 257 (394)
Q Consensus 233 -----------------~h~~~V~~l~~~-------------~~-------------------------~l~sgs~Dg~V 257 (394)
+|...|+.|+.+ ++ .|++|+.|.++
T Consensus 269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 899999988865 33 49999999999
Q ss_pred EEEeCCC-CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134 258 RVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 258 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 334 (394)
.+|+... .+++..+.+|...|..+.|+ +.++|+++.|..|++||.++++.+..+.+|-..+..++ |+.|.+ +
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsR-L 423 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSR-L 423 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE----eccCcc-E
Confidence 9999754 55888899999999999999 78999999999999999999999999988876544443 588888 9
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 335 LICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
|++|+.|.++++||+++.++...+. +.++|.++.|+||| .+++|+.|..+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999988888 48899999999999 999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-41 Score=302.04 Aligned_cols=274 Identities=24% Similarity=0.305 Sum_probs=241.2
Q ss_pred CCCCCcccc-cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc--ccccCCCeec
Q 016134 72 KKSPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC--CHWLLGNCVR 148 (394)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~--~~~~~~~~~~ 148 (394)
..+|.+.-. ..++..|+|||-+.+++||+..+.+... ..+||...+..+. |.|. ..-+|+++.|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~------------~l~gH~~~v~~~~-fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ------------TLRGHTSRVGAAV-FHPVDSDLNLATASAD 240 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE------------EEeccccceeeEE-EccCCCccceeeeccC
Confidence 466666655 4488899999999999999999775432 5889999999998 9986 4567766666
Q ss_pred CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
| ++++|++.+. .+++.+.+|...|..++|+|+|++|+|++.|.+ +||++++..+..
T Consensus 241 g----tvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~----------------- 298 (459)
T KOG0272|consen 241 G----TVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL----------------- 298 (459)
T ss_pred C----ceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-----------------
Confidence 6 9999999887 899999999999999999999999999999999 899999987631
Q ss_pred EEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134 227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~ 302 (394)
..||...|.+++|+ |.++++|+.|..-||||++++.++..|.+|..+|.+|.|+ |..||||+.|++++|||+
T Consensus 299 ----QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 299 ----QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred ----hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 22788888888886 8899999999999999999999999999999999999999 789999999999999999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG 380 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~ 380 (394)
+....+..+..|...+..+. |+|+...+|+|++.|++++||..+++.++..+.+ ...|.++++++|+ .|+|++.
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk----~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVK----YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred cccccceecccccchhhheE----ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence 99999888888876655444 5885555999999999999999999999998876 7789999999999 9999999
Q ss_pred CCeEEEEe
Q 016134 381 AGMLGVWK 388 (394)
Q Consensus 381 Dg~I~vWd 388 (394)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-39 Score=286.40 Aligned_cols=262 Identities=23% Similarity=0.281 Sum_probs=230.6
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A 198 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v 198 (394)
-..||..+|-+++ |+|.+..+++++ .|.++|+||+.+. .+..+.++|...|.|++|+|||+.||||+.||+ +
T Consensus 110 S~~GH~e~Vl~~~-fsp~g~~l~tGs----GD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQ-FSPTGSRLVTGS----GDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ccCCCCCcEEEEE-ecCCCceEEecC----CCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 4669999999999 999998888654 4559999999987 889999999999999999999999999999999 5
Q ss_pred eecCCCcEE--EecCCCCcEEEEEEcCC-------EEEEEecC------------------CCCCCEEEEEec-CCeEEE
Q 016134 199 WNIESSAEF--SLDGPVGEVYSMVVANE-------MLFAGAQD------------------GHTRPVTCLAVG-RSRLCS 250 (394)
Q Consensus 199 Wd~~~~~~~--~~~~~~~~v~~l~~~~~-------~l~~~~~~------------------~h~~~V~~l~~~-~~~l~s 250 (394)
||.++++++ .+.+|...|.+++|.|- .+++++.| +|+.+|+|+.|. .+++++
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 999999987 78999999999999874 56666656 899999999998 689999
Q ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-------------CC-------------------------EEEEEe
Q 016134 251 GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-------------DQ-------------------------FLLSCS 292 (394)
Q Consensus 251 gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~l~s~s 292 (394)
||.|++|++|+...+++.+++++|...|+.++.+ +. .|++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999875 22 499999
Q ss_pred CCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEEC
Q 016134 293 LDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIG 370 (394)
Q Consensus 293 ~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 370 (394)
.|.++.+|+-... +++..+.+|...+. .+.|+||+. ++|+++.|..|++||.++++.+..+. |-..|+.++|+
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn----~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVN----HVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS 418 (480)
T ss_pred CCceEEEecccccccchhhhhchhhhee----eEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence 9999999986543 35555666654433 345799999 99999999999999999999999988 47889999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCC
Q 016134 371 PDK-LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 371 p~~-~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.|. +|++|+.|.++++|++.++.
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeee
Confidence 999 99999999999999998764
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=245.96 Aligned_cols=270 Identities=17% Similarity=0.230 Sum_probs=223.3
Q ss_pred CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134 75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF 154 (394)
Q Consensus 75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (394)
...|++ |+..|+|+|.|..+-|||.-|.+-.. . -..+. ..|-..+ ++|.+.++|.+..+. .
T Consensus 60 ~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~h-a----ipl~s-------~WVMtCA-~sPSg~~VAcGGLdN----~ 120 (343)
T KOG0286|consen 60 AMDWST--DSRRIVSASQDGKLIVWDSFTTNKVH-A----IPLPS-------SWVMTCA-YSPSGNFVACGGLDN----K 120 (343)
T ss_pred eeEecC--CcCeEEeeccCCeEEEEEccccccee-E----EecCc-------eeEEEEE-ECCCCCeEEecCcCc----e
Confidence 345666 99999999999999999987665321 0 00111 2455666 999999999777666 8
Q ss_pred EEEEEcCCC-----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 155 LHSWFCGEG-----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 155 i~iWd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
..||++.+. .+..+++.+|++.+.|+.|-+ ...|+|+|.|.+ +||+++++...
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~------------------- 180 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ------------------- 180 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE-------------------
Confidence 889988633 256788999999999999976 567999999999 79999999874
Q ss_pred EEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134 228 AGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~ 302 (394)
.+.+|...|.+|.+. ++.+++|+.|++.+|||++.+.++++|.+|...|.++.|. |.-|++|++|++.++||+
T Consensus 181 --~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 181 --VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred --EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 222667777777765 5889999999999999999999999999999999999999 789999999999999999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG 380 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~ 380 (394)
|..+.+..+........+.+ +.|+..|+ +|++|..|.++.+||.-.++.+..+.. +..|+++..+||| .++||+.
T Consensus 259 RaD~~~a~ys~~~~~~gitS--v~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITS--VAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred cCCcEEeeeccCcccCCcee--EEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch
Confidence 99888877764443334443 35789999 899999999999999999988888876 7789999999999 9999999
Q ss_pred CCeEEEEe
Q 016134 381 AGMLGVWK 388 (394)
Q Consensus 381 Dg~I~vWd 388 (394)
|.+|+||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-34 Score=261.51 Aligned_cols=300 Identities=18% Similarity=0.217 Sum_probs=247.1
Q ss_pred CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccC-----CCCccceeeeccccccccccCCCeecC
Q 016134 75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDE-----SGDKSTSKKTTLKNVCCHWLLGNCVRG 149 (394)
Q Consensus 75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~-----~g~~~~v~~~~~~~~~~~~~~~~~~~g 149 (394)
-.+|+|+ ..+.+++|++|-+.|+|++....-.. +.-...+.... ....+.|++++ |+.++.+||++..+|
T Consensus 183 ~~~WnP~-~~~llasg~~~s~ari~~l~e~~~~~---~~q~~lrh~~~~~~~s~~~nkdVT~L~-Wn~~G~~LatG~~~G 257 (524)
T KOG0273|consen 183 ICAWNPL-RDGLLASGSGDSTARIWNLLENSNIG---STQLVLRHCIREGGKSVPSNKDVTSLD-WNNDGTLLATGSEDG 257 (524)
T ss_pred EEecCch-hhhhhhccCCccceeeeeehhhcccc---chhhhhhhhhhhhcccCCccCCcceEE-ecCCCCeEEEeecCc
Confidence 3467762 22256889999999999988511100 00001111111 12237899999 999999999998888
Q ss_pred CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC-E
Q 016134 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE-M 225 (394)
Q Consensus 150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~-~ 225 (394)
.+|||+... .++.+|..|+++|.+|.|+..|++|++++.|++ +||..+++.. .+.-+..+...+.|..+ .
T Consensus 258 ----~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 258 ----EARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred ----EEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 999999865 578899999999999999999999999999999 6999998876 44556666566777554 4
Q ss_pred EEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-
Q 016134 226 LFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW- 284 (394)
Q Consensus 226 l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~- 284 (394)
+++.+.+ +|.++|.+|.|+ +.+|+++|.|++++||.+....+...|.+|...|+.+.|+
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 4433333 899999999999 8899999999999999999999999999999999999987
Q ss_pred ----------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134 285 ----------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME 354 (394)
Q Consensus 285 ----------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~ 354 (394)
+..+++++.|++|++||+..+.++..+..|..++..++ |+|+|+ ++++|+.|+.|.||+.++++.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva----fS~~g~-ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA----FSPNGR-YLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE----ecCCCc-EEEecCCCCeeEeccccchhe
Confidence 35899999999999999999999999988887665554 599999 999999999999999999999
Q ss_pred eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 355 RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 355 ~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
...+.....|..++|+.+| +|..+-.|+.+++-|+.
T Consensus 487 ~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 VKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999988899999999999 99999999999998875
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=267.08 Aligned_cols=254 Identities=20% Similarity=0.303 Sum_probs=214.0
Q ss_pred eEEEeeeCccCCCCCccccccCCCcccCCCcccCCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccc
Q 016134 39 VCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASST 118 (394)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~ 118 (394)
+|+.|.+..||--.-=.-|..- -+...|.|..+...++|+|.|+++++|.+++.....
T Consensus 198 ~~kvW~~~~~~~~~~l~gH~~~------------v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---------- 255 (459)
T KOG0272|consen 198 LVKVWSVPQCNLLQTLRGHTSR------------VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---------- 255 (459)
T ss_pred ceeEeecCCcceeEEEeccccc------------eeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------
Confidence 8999999998543222223221 133444442235578999999999999999765443
Q ss_pred cccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-
Q 016134 119 VSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT- 197 (394)
Q Consensus 119 ~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~- 197 (394)
...||...|..|+ |+|.|.|++++|+|- +-++||+.++ ..+...+||...|.+|+|.+||.+++||+.|..
T Consensus 256 --~l~gH~~RVs~Va-fHPsG~~L~TasfD~----tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 256 --DLEGHLARVSRVA-FHPSGKFLGTASFDS----TWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred --hhhcchhhheeee-ecCCCceeeeccccc----chhhcccccc-hhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 6779999999999 999999999999998 9999999988 556667899999999999999999999999988
Q ss_pred -eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 016134 198 -AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274 (394)
Q Consensus 198 -vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h 274 (394)
|||++++.++.+ +++|..+|.+++|+ |..|+||+.|++++|||++..+++.++.+|
T Consensus 328 RvWDlRtgr~im~---------------------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH 386 (459)
T KOG0272|consen 328 RVWDLRTGRCIMF---------------------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH 386 (459)
T ss_pred heeecccCcEEEE---------------------ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc
Confidence 999999998742 23677777777776 567999999999999999999999999999
Q ss_pred CCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134 275 TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348 (394)
Q Consensus 275 ~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd 348 (394)
.+-|+.|.|. |.+|+|++.|++++||..++..+++.+.+|...+..+.+ ++++. ++++++.|+++++|.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di----s~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI----SPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe----ccCCc-eEEEeccCceeeecc
Confidence 9999999998 789999999999999999999999999999876554444 89999 999999999999995
No 7
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=241.73 Aligned_cols=274 Identities=22% Similarity=0.310 Sum_probs=212.5
Q ss_pred CCCcccc-ccccc--ccccCCCCCcccccccCCCC-CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC
Q 016134 74 SPPSYNR-LKNNL--WVSSGSEDRIPHVRNRENPG-YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG 149 (394)
Q Consensus 74 ~~~~~~~-~~~~~--~~~s~s~d~~~~~w~~~~~~-~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g 149 (394)
..--|+. .+|.. -|+|+|+||.+|+|+...+. ++- ...-.-||+++|++++ |+|++++||+++++.
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c---------k~vld~~hkrsVRsvA-wsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC---------KTVLDDGHKRSVRSVA-WSPHGRYLASASFDA 83 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE---------EEeccccchheeeeee-ecCCCcEEEEeeccc
Confidence 3334444 44553 68999999999999998533 211 0112348999999999 999999999999998
Q ss_pred CCCCeEEEEEcC-CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 150 DECRFLHSWFCG-EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 150 ~~~~~i~iWd~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
++-||.-. ..++++.+++||...|.+++|+++|.+|||++.|+.| |.+..+..+.
T Consensus 84 ----t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe------------------ 141 (312)
T KOG0645|consen 84 ----TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE------------------ 141 (312)
T ss_pred ----eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE------------------
Confidence 99999875 5579999999999999999999999999999999995 5555444432
Q ss_pred EEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCC---CCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134 227 FAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELD---TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV 299 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v 299 (394)
+.+....|+..|.-+.|++ .+|+++|.|.+|++|+-. ..+++++|.+|...|.+++|+ |..|++++.|++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 2234458999999999996 889999999999999765 457899999999999999999 789999999999999
Q ss_pred EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC------ceeEEE--ecCCcEEEEEECC
Q 016134 300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF------MERGRI--FSKHEVRVIEIGP 371 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~------~~~~~~--~~~~~v~~l~~sp 371 (394)
|-+...- ...|......+++ . ++ +|++++.|+.|++|..... +.+... .|...|++++|.|
T Consensus 222 w~~~~~~----~~~~sr~~Y~v~W----~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 222 WRLYTDL----SGMHSRALYDVPW----D-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeccCc----chhcccceEeeee----c-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 9865321 1112222222332 3 33 7999999999999976643 122212 2355799999999
Q ss_pred CC--EEEEEeCCCeEEEEeCC
Q 016134 372 DK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 372 ~~--~l~tgs~Dg~I~vWd~~ 390 (394)
.. +|++|+.||.|++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 53 99999999999999975
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-33 Score=238.97 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=216.9
Q ss_pred ccccccCCCCCcccccccCCCCC--CCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC
Q 016134 84 NLWVSSGSEDRIPHVRNRENPGY--TGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG 161 (394)
Q Consensus 84 ~~~~~s~s~d~~~~~w~~~~~~~--~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~ 161 (394)
..-++++|-|+++.+|++..... .... .-..||...|..+. .++++.+..+++.++ ++|+||+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~---------r~~~GHsH~v~dv~-~s~dg~~alS~swD~----~lrlWDl~ 93 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPV---------RRLTGHSHFVSDVV-LSSDGNFALSASWDG----TLRLWDLA 93 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCcee---------eeeeccceEecceE-EccCCceEEeccccc----eEEEEEec
Confidence 34567889999999999987532 1111 13569999999999 999999998877777 99999999
Q ss_pred CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT 239 (394)
Q Consensus 162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~ 239 (394)
++ +..+.|.||...|.+++|++|.+.|+||+.|.+ +|++.....+.+.. +.+...|.
T Consensus 94 ~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~--------------------~~~~~WVs 152 (315)
T KOG0279|consen 94 TG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE--------------------DSHREWVS 152 (315)
T ss_pred CC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec--------------------CCCcCcEE
Confidence 98 899999999999999999999999999999999 69988776655432 24567788
Q ss_pred EEEecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134 240 CLAVGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT 313 (394)
Q Consensus 240 ~l~~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 313 (394)
|+.|++ ..|++++.|++|++||+++.+....+.+|++.++.+.++ |.++++|+.||.+.+||++.++.+..+..
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence 888874 369999999999999999999999999999999999999 88999999999999999999988665543
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----------CCcEEEEEECCCC-EEEEEeCCC
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----------KHEVRVIEIGPDK-LFFTGDGAG 382 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------~~~v~~l~~sp~~-~l~tgs~Dg 382 (394)
. ..+.+ .+|+|+.- +|+ ...+..|+|||+.+...+..+.. .-...+++|++|| .|+.|-.|+
T Consensus 233 -~--~~v~s--l~fspnry-wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 233 -F--DIVNS--LCFSPNRY-WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred -C--CeEee--EEecCCce-eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 2 23333 34788764 444 55567799999999877665543 1236788999999 999999999
Q ss_pred eEEEEeCC
Q 016134 383 MLGVWKLL 390 (394)
Q Consensus 383 ~I~vWd~~ 390 (394)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=228.14 Aligned_cols=266 Identities=19% Similarity=0.225 Sum_probs=211.4
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
+.-.++|+|-|.|||+|.+.+|.+... .+-....|..+. ..|++.+||.++.- .||+||+.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT------------iqh~dsqVNrLe-iTpdk~~LAaa~~q-----hvRlyD~~S 70 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT------------IQHPDSQVNRLE-ITPDKKDLAAAGNQ-----HVRLYDLNS 70 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE------------EecCccceeeEE-EcCCcchhhhccCC-----eeEEEEccC
Confidence 445678999999999999999997641 222224567777 88999999988875 699999976
Q ss_pred Cc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134 163 GL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT 239 (394)
Q Consensus 163 ~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~ 239 (394)
+. .++.++.+|++.|+++.|..+|+.++||+.||+ |||++...+.+.. .|..+|+
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------------------~~~spVn 128 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------------------QHNSPVN 128 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc----------------------cCCCCcc
Confidence 54 489999999999999999999999999999999 7999996665544 4556677
Q ss_pred EEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce------e
Q 016134 240 CLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN------L 308 (394)
Q Consensus 240 ~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~------~ 308 (394)
++..++ ..|++|..+|.|+|||+.+..+...+. .....|.++... |.+|+.+...|...+|++-.... +
T Consensus 129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 777763 469999999999999999887766654 334567777766 89999999999999999876432 2
Q ss_pred eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLG 385 (394)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~ 385 (394)
.++..|. ...+.+.++|+++ +|++++.|.+++||+.+++ +....+.. ...++.++|+.|+ +|+|++.|+.++
T Consensus 209 ~k~~ah~----~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 209 HKFQAHN----GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred hheeccc----ceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence 2333333 2334445799999 9999999999999999998 33333333 5579999999999 999999999999
Q ss_pred EEeCCCCC
Q 016134 386 VWKLLAKP 393 (394)
Q Consensus 386 vWd~~~~~ 393 (394)
+|++....
T Consensus 284 lW~~~~~k 291 (311)
T KOG0315|consen 284 LWDLSAGK 291 (311)
T ss_pred ecccccCc
Confidence 99998754
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=248.05 Aligned_cols=265 Identities=23% Similarity=0.289 Sum_probs=233.4
Q ss_pred ccccc-ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEE
Q 016134 81 LKNNL-WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWF 159 (394)
Q Consensus 81 ~~~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd 159 (394)
++|+- ..+++|.|.++++||.+++.+.. +.+||...+-.++ +.-.+.++++.+.|- .+++||
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~------------~LrGHt~sv~di~-~~a~Gk~l~tcSsDl----~~~LWd 178 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELER------------SLRGHTDSVFDIS-FDASGKYLATCSSDL----SAKLWD 178 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhh------------hhhccccceeEEE-EecCccEEEecCCcc----chhhee
Confidence 55665 34577789999999999999853 8999999999999 998999999887776 599999
Q ss_pred cCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134 160 CGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTR 236 (394)
Q Consensus 160 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~ 236 (394)
..+.+++++.+.+|...|.+++|-|.|.+|+|++.|.+ .|++.++-++. +. +|..
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~----------------------~h~e 236 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP----------------------GHSE 236 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc----------------------CchH
Confidence 98878999999999999999999999999999999999 49999999873 33 5555
Q ss_pred CEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------------C-----CEEEEEeCCCcE
Q 016134 237 PVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------------D-----QFLLSCSLDHTI 297 (394)
Q Consensus 237 ~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------------~-----~~l~s~s~Dg~i 297 (394)
.|.-++.+ +.++++++.|.+|++|-+.++++...+..|.-+|.+++|. + +++.+++.|++|
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 66666665 6789999999999999999999999999999999999884 2 599999999999
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF 375 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l 375 (394)
++||+.++.++.++.+|...+..++ |+|.|+ +|+++.+|+++++||+++.++...+.. .+-|++++|+.+. ++
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~a----f~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVA----FSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeE----EcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999999999999987666555 499999 999999999999999999988888765 7779999999988 99
Q ss_pred EEEeCCCeEEEEeC
Q 016134 376 FTGDGAGMLGVWKL 389 (394)
Q Consensus 376 ~tgs~Dg~I~vWd~ 389 (394)
+||+-|..+++|.-
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999973
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=255.62 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=241.1
Q ss_pred eeCccCCCCCccccccCCCcccCCCcccCCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCC
Q 016134 44 LEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDES 123 (394)
Q Consensus 44 ~~~~~~~~~~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~ 123 (394)
+.-.|+.++.+|+|.-+=..- ..-.-+.|.+ ++-.|++||+-..+.+||..+-++. ...+
T Consensus 76 ~~dp~~~~~tKf~h~s~NKvk------c~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~fnFE------------tilQ 135 (464)
T KOG0284|consen 76 LDDPSSAFTTKFVHTSSNKVK------CPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTSFNFE------------TILQ 135 (464)
T ss_pred cCCcccccccceEeccccccc------cceeeEEEcC--CCceeEeecccccEEEecCceeeHH------------HHhh
Confidence 345555566666666433221 1234567888 8889999999999999998654443 2567
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeCCCc--eee
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSRDGT--AWN 200 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~--vWd 200 (394)
.|...|++.. |+..+.|+.++ +.+++|++|+.+. ..++.+++|. ..|.+++|+|+...|+|++.|++ |||
T Consensus 136 aHDs~Vr~m~-ws~~g~wmiSg----D~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 136 AHDSPVRTMK-WSHNGTWMISG----DKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred hhcccceeEE-EccCCCEEEEc----CCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 8888999999 99999998754 5555999999854 3456666665 99999999999999999999999 699
Q ss_pred cCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc
Q 016134 201 IESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278 (394)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v 278 (394)
....+..+. ..+|.-.|.+++|+ ..+|++++.|..|++||.++++|+.++.+|...|
T Consensus 209 f~~~kee~v---------------------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 209 FRMPKEERV---------------------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred ccCCchhhe---------------------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 876654321 12788889999998 5789999999999999999999999999999999
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134 279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG 356 (394)
Q Consensus 279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~ 356 (394)
+.+.|. +++|+++|.|..++++|+++.+.+..+..|+....... |+|-...+|++|+.||.|..|.+...+++.
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~----WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT----WHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec----cccccccceeeccCCCceEEEecccccccc
Confidence 999999 88999999999999999998888888888887665554 478777799999999999999998666666
Q ss_pred EEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 357 RIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 357 ~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
.+.. ...|++++|+|-| +|++|+.|.++++|.-
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 6654 6679999999999 9999999999999964
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=228.01 Aligned_cols=224 Identities=21% Similarity=0.346 Sum_probs=203.4
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------ 232 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------ 232 (394)
++..++|+||.+.|.++.|++|.++|+++|.||. |||.-+.... .+.-+...|...+|+|. ++++|+.|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 3556899999999999999999999999999999 6998766554 66778889999999998 88888777
Q ss_pred ------------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEE
Q 016134 233 ------------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLS 290 (394)
Q Consensus 233 ------------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s 290 (394)
+|+..+.|..|- .+.|+++|.|.++.+||+++++.++.|.+|.+.|.++.+. ++.+++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 899999999996 7889999999999999999999999999999999999998 689999
Q ss_pred EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEE
Q 016134 291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVI 367 (394)
Q Consensus 291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l 367 (394)
|+.|+..+|||+|.+.+++.+.+|...+..+.+ .|+|. -+++|++|++.++||++..+++..+.+ ..+|+++
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~f----fP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF----FPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEE----ccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 999999999999999999999999988776654 89998 899999999999999999998888876 5579999
Q ss_pred EECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 368 EIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 368 ~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+|+..| +|++|..|.++.+||.-..
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred EEcccccEEEeeecCCceeEeecccc
Confidence 999999 9999999999999997544
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.3e-33 Score=244.13 Aligned_cols=245 Identities=22% Similarity=0.350 Sum_probs=213.3
Q ss_pred cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCC
Q 016134 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVG 214 (394)
Q Consensus 138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~ 214 (394)
|-+|-..--++|..|.+|+|||.++- .+++.+.||++.|.|+.|. .+.|++|+.|.+ |||+++++++ .+..|..
T Consensus 202 ClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHce 278 (499)
T KOG0281|consen 202 CLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE 278 (499)
T ss_pred EEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcc
Confidence 33444445567888889999998775 8899999999999999984 569999999999 6999999998 6788999
Q ss_pred cEEEEEEcCCEEEEEecC---------------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC
Q 016134 215 EVYSMVVANEMLFAGAQD---------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND 273 (394)
Q Consensus 215 ~v~~l~~~~~~l~~~~~~---------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~ 273 (394)
.|..+.|++.++++++.| ||...|+.+.|+.+++++++.|.+|++|++.++++++++.+
T Consensus 279 aVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 279 AVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred eeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc
Confidence 999999999999998887 89999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 274 HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 274 h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
|...|.|+.+.++++++|+.|.+|++||+..+.++..+.+|++-+..+.+ +.+ -+++|..||+|+|||+..+.
T Consensus 359 HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF------d~k-rIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 359 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------DNK-RIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee------cCc-eeeeccccceEEEEeccccc
Confidence 99999999999999999999999999999999999999999887666654 445 79999999999999998764
Q ss_pred eeE----------EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 354 ERG----------RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 354 ~~~----------~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
... ...+.+.|..+.|..- .+++++.|.+|.|||+...+
T Consensus 432 dpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 432 DPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred CCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEcCCCC
Confidence 331 1123567999988432 89999999999999987654
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-31 Score=226.39 Aligned_cols=242 Identities=20% Similarity=0.279 Sum_probs=202.0
Q ss_pred ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134 120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD 195 (394)
Q Consensus 120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D 195 (394)
+...||+..|+.++ -.+.. ....++.+.|.++.+|++... ..+++.|.||...|..+..++||++.++++.|
T Consensus 9 ~tl~gh~d~Vt~la-~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALA-IKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeecCCCceEEEEE-eecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 35778888999888 55542 223456677779999998532 25789999999999999999999999999999
Q ss_pred Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134 196 GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL 271 (394)
Q Consensus 196 g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 271 (394)
++ +||+.+++.... +.+|...|.+++|+ ..++++|+.|.+|++|+.. +.+..++
T Consensus 85 ~~lrlWDl~~g~~t~~---------------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~ 142 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRR---------------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTI 142 (315)
T ss_pred ceEEEEEecCCcEEEE---------------------EEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEE
Confidence 99 699999876531 12788888888887 5789999999999999987 5666666
Q ss_pred cCC--CCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134 272 NDH--TDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVH 345 (394)
Q Consensus 272 ~~h--~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~ 345 (394)
..+ .+.|.++.|+ +.+|++++.|++|++||+++.+....+.+|......+.+ +|||. ++++|+.||.+.
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v----SpDGs-lcasGgkdg~~~ 217 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV----SPDGS-LCASGGKDGEAM 217 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE----CCCCC-EEecCCCCceEE
Confidence 544 7899999999 458999999999999999998888888888766555544 99999 999999999999
Q ss_pred EEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 346 LYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 346 iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
+||++.++.+..+.+...|.+++|+|+.+.++...+..|+|||+.++
T Consensus 218 LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 218 LWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred EEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 99999999999999999999999999995555566667999999875
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=239.28 Aligned_cols=239 Identities=23% Similarity=0.426 Sum_probs=211.7
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--e
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--W 199 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--W 199 (394)
..||...|++++ +.|...|+++++.|+ +|+|||+.++ ++..++.||...|..+++++-..||++++.|+.| |
T Consensus 147 i~gHlgWVr~va-vdP~n~wf~tgs~Dr----tikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 147 ISGHLGWVRSVA-VDPGNEWFATGSADR----TIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhccceEEEEe-eCCCceeEEecCCCc----eeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 349999999999 999999999877766 9999999999 9999999999999999999999999999999995 9
Q ss_pred ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134 200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277 (394)
Q Consensus 200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~ 277 (394)
|++..+.++ .+-+|-..|.|++.+ -+.|++|+.|.++||||+++...+..+.+|..+
T Consensus 221 DLe~nkvIR---------------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 221 DLEYNKVIR---------------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred echhhhhHH---------------------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 999988764 122778888888887 467999999999999999999999999999999
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
|.++.+. +..+++||.|++|++||++.++....+..|+..+.++++ +|... .+++++.| .|+-|+++.+..+
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l----hP~e~-~fASas~d-nik~w~~p~g~f~ 353 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL----HPKEN-LFASASPD-NIKQWKLPEGEFL 353 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec----CCchh-hhhccCCc-cceeccCCccchh
Confidence 9999998 789999999999999999999998888887765555554 88876 88888877 5999999999887
Q ss_pred EEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 356 GRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 356 ~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
..+.. ..-|++++...|+++++|++.|.|.+||+.+..
T Consensus 354 ~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred hccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 77554 556999999999999999999999999998754
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=240.87 Aligned_cols=273 Identities=22% Similarity=0.339 Sum_probs=228.1
Q ss_pred CCCCcccc---cc-cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec
Q 016134 73 KSPPSYNR---LK-NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR 148 (394)
Q Consensus 73 ~~~~~~~~---~~-~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 148 (394)
.+-+.|.+ +. -+.|++|||+|++++|||+.++.+-- ...||...|+.++ +++--.|+.++..+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl------------tltGhi~~vr~va-vS~rHpYlFs~ged 214 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL------------TLTGHIETVRGVA-VSKRHPYLFSAGED 214 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE------------eecchhheeeeee-ecccCceEEEecCC
Confidence 44556766 23 35699999999999999999999743 5778999999999 99888888766555
Q ss_pred CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
+ .|+.||++.+ +.++.+.||-..|.|++.+|.-+.|+||+.|.+ |||+++...+.
T Consensus 215 k----~VKCwDLe~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~------------------ 271 (460)
T KOG0285|consen 215 K----QVKCWDLEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH------------------ 271 (460)
T ss_pred C----eeEEEechhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE------------------
Confidence 5 9999999988 899999999999999999999999999999999 79999987663
Q ss_pred EEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134 227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~ 302 (394)
...+|..+|..+.+. ...+++||.|++|++||++.++...++..|...|.+++.+ ...|++++.| .|+-|++
T Consensus 272 ---~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 272 ---VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL 347 (460)
T ss_pred ---EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence 222778888888876 6789999999999999999999999999999999999998 4567777776 5899999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE---------ecCCcEEEEEECCCC
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI---------FSKHEVRVIEIGPDK 373 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---------~~~~~v~~l~~sp~~ 373 (394)
..+..+..+..|......++. +.|+ ++++|+++|.|.+||.+++...+.. ..+..|.+.+|...+
T Consensus 348 p~g~f~~nlsgh~~iintl~~----nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNAIINTLSV----NSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred Cccchhhccccccceeeeeee----ccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999888887777655555544 4454 7999999999999999987544433 125569999999999
Q ss_pred -EEEEEeCCCeEEEEeCCC
Q 016134 374 -LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 374 -~l~tgs~Dg~I~vWd~~~ 391 (394)
.|+||..|.+|++|.-++
T Consensus 422 ~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceEEeccCCcceEEEeccc
Confidence 999999999999998554
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-32 Score=256.83 Aligned_cols=290 Identities=21% Similarity=0.287 Sum_probs=228.3
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
.++.+++|+.|+.++|||+..+..+. -.+||+..|.++. |.|.-.+ --.++|+.|+.+++||+.+
T Consensus 116 ~g~LlAtggaD~~v~VWdi~~~~~th------------~fkG~gGvVssl~-F~~~~~~--~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 116 TGTLLATGGADGRVKVWDIKNGYCTH------------SFKGHGGVVSSLL-FHPHWNR--WLLASGATDGTVRVWNLND 180 (775)
T ss_pred CCceEEeccccceEEEEEeeCCEEEE------------EecCCCceEEEEE-eCCccch--hheeecCCCceEEEEEccc
Confidence 55677899999999999999988764 5889999999998 8886555 3456778888999999986
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEe-------------------------------
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSL------------------------------- 209 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~------------------------------- 209 (394)
...++.+++.|...|++++|.+|+.-+++++.|.. |||+.+.+....
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 65678899999999999999999999999999998 577644322111
Q ss_pred -----------------------------------------------------------cCCCCcEEEEEEcC---CEEE
Q 016134 210 -----------------------------------------------------------DGPVGEVYSMVVAN---EMLF 227 (394)
Q Consensus 210 -----------------------------------------------------------~~~~~~v~~l~~~~---~~l~ 227 (394)
.+..++|.+|.|-. +.++
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 11122333333322 1333
Q ss_pred EEecC-----------------CCCCCEEEEE-ec-CCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCcEEEEEc
Q 016134 228 AGAQD-----------------GHTRPVTCLA-VG-RSRLCSGSMDNTIRVWELDTLE----PVMTLNDHTDAPMSLLCW 284 (394)
Q Consensus 228 ~~~~~-----------------~h~~~V~~l~-~~-~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~ 284 (394)
+++.. +|+..|.++. |+ +.+|++|+.|.++++|.++.+. ++....+|...|.+++++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 33322 8999999999 54 6699999999999999884432 456667899999999998
Q ss_pred ---CCEEEEEeCCCcEEEEEeCCCcee---------eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134 285 ---DQFLLSCSLDHTIKVWFATGRGNL---------EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 285 ---~~~l~s~s~Dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
..+|+++|.|.+|++|++...+.. .....|...+..+++ +|+.+ +++||+.|.+.+||+++..
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai----a~ndk-LiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI----APNDK-LIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe----cCCCc-eEEecccccceeeecccCc
Confidence 579999999999999999762211 122345555666665 89888 9999999999999999988
Q ss_pred ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 353 MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 353 ~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.....+.+ ...|+++.|+|.. .++|+|.|++|+||.+++.
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 88888876 6679999999988 9999999999999999763
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-30 Score=239.85 Aligned_cols=294 Identities=16% Similarity=0.231 Sum_probs=231.3
Q ss_pred CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134 73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC 152 (394)
Q Consensus 73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~ 152 (394)
.=.++|+| |+++++|.|+|+++||||+.+..+.. +|..|.+..- +.....|......+-+..
T Consensus 238 IfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~-----------t~~~~~~v~d-----qqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 238 IFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVS-----------TWPMGSTVED-----QQVGCLWQKDHLITVSLS 299 (603)
T ss_pred EEEEEECC--CCceEEEecCCceEEEEEeeccceEE-----------EeecCCchhc-----eEEEEEEeCCeEEEEEcC
Confidence 44578999 99999999999999999999998753 3666665211 334445555555555566
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEe--cCCCCcEEEEEEcC-CEEE
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSL--DGPVGEVYSMVVAN-EMLF 227 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~--~~~~~~v~~l~~~~-~~l~ 227 (394)
|+|.+++.... .+++++.||.+.|++++.++++++|+||+.||.| |+..++..-++ ..|..+|..++... +.++
T Consensus 300 G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 300 GTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred cEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 69999999888 5999999999999999999999999999999996 99998887766 56888888888777 4666
Q ss_pred EEecC---------------------------------------------------------CCCCCEEEEEec--CCeE
Q 016134 228 AGAQD---------------------------------------------------------GHTRPVTCLAVG--RSRL 248 (394)
Q Consensus 228 ~~~~~---------------------------------------------------------~h~~~V~~l~~~--~~~l 248 (394)
+.+.| .-.-...+++++ ++.+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 65555 011123344554 6789
Q ss_pred EEEeCCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec-ccCCcceEEE
Q 016134 249 CSGSMDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLAL 323 (394)
Q Consensus 249 ~sgs~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~ 323 (394)
+.|+.|+.|+||.+...+. ...+..|.++|++++|+ +.+|+++...+.+.+||+.+.+....... |. ..+.
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt--akI~-- 534 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHT--AKIN-- 534 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeee--eeEE--
Confidence 9999999999999986543 33456799999999999 78999999999999999988766333222 33 2333
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
+++|+|+.+ ++|+|+.|..|.||++........+.. ...|+.+.|-.+..|++.++|..|++|++.
T Consensus 535 ~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCce-EEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 335799999 999999999999999998766655554 445999999988899999999999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=3.7e-31 Score=254.51 Aligned_cols=201 Identities=19% Similarity=0.324 Sum_probs=180.8
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
....++.||+++|..+.|+|+.++|+++|.|++ +|.+++..++. ...+|..+|+++.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---------------------~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---------------------IYKGHLAPVWDVQ 500 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---------------------EecCCCcceeeEE
Confidence 345668999999999999999999999999999 69999988763 2237788888888
Q ss_pred ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
|+ |-+|||+|.|++.++|.....++++.+.+|.+.|.|+.|+ ..++++||.|.+||+||+.++..++.+.+|..++
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 87 6789999999999999999999999999999999999999 6799999999999999999999999999988766
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.+++ |+|+|. +|++|+.|+.|.|||+.+++.+..+.. .+.|.++.|+.+| .||+|+.|.+|++||+..
T Consensus 581 ~al~----~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 581 TALA----FSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEE----EcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 5554 599999 999999999999999999988877765 7779999999999 999999999999999864
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=250.76 Aligned_cols=268 Identities=24% Similarity=0.334 Sum_probs=227.3
Q ss_pred cccccccCCCCCcccccccCCCC--CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPG--YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC 160 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~--~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~ 160 (394)
++..+++++.|+++++|+.++.. +. ....||...|..++ |+|++.+++++..|. +|+|||+
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~------------~~l~~h~~~v~~~~-fs~d~~~l~s~s~D~----tiriwd~ 232 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKSNLL------------RELSGHTRGVSDVA-FSPDGSYLLSGSDDK----TLRIWDL 232 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccchhh------------ccccccccceeeeE-ECCCCcEEEEecCCc----eEEEeec
Confidence 77789999999999999997665 22 13479999999999 999999888776666 9999999
Q ss_pred CCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV 238 (394)
Q Consensus 161 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V 238 (394)
......++++++|...|++++|+|+++++++|+.|++ |||++++++.. ...+|...|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---------------------~l~~hs~~i 291 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---------------------KLKGHSDGI 291 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---------------------eeeccCCce
Confidence 6666899999999999999999999999999999999 69999988764 223778888
Q ss_pred EEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCC--cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134 239 TCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDA--PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA 310 (394)
Q Consensus 239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~--v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~ 310 (394)
++++|+ +++|++++.|+.|+|||+.+++ ++..+..+... ++++.|+ +.+|+++..|+.+++||++....+..
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 888887 7899999999999999999998 66777776655 8999998 88999999999999999999999888
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--CcEEEEEECCCC-EEEEEe--CCCeEE
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--HEVRVIEIGPDK-LFFTGD--GAGMLG 385 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~sp~~-~l~tgs--~Dg~I~ 385 (394)
+..|.... ...+...+++.+. ++++|+.|+.|++||+.++..+..+... ..+..++++|.. ++++++ .|+.|+
T Consensus 372 ~~~~~~~~-~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 372 YTGHSNLV-RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred ecccCCcc-eeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 88887652 1222334467787 9999999999999999998777766653 668999999998 888888 799999
Q ss_pred EEeCC
Q 016134 386 VWKLL 390 (394)
Q Consensus 386 vWd~~ 390 (394)
+|..+
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99865
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4.8e-29 Score=229.74 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=240.6
Q ss_pred CCCCCcccc-cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCC
Q 016134 72 KKSPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGD 150 (394)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~ 150 (394)
..++..-.. ..|.+.-+-.-..+.+.+.+++++.... ....|...++... ++|.+.|+|++-.+|
T Consensus 16 t~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~------------iYtEH~~~vtVAk-ySPsG~yiASGD~sG- 81 (603)
T KOG0318|consen 16 TERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVD------------IYTEHAHQVTVAK-YSPSGFYIASGDVSG- 81 (603)
T ss_pred ccCCcceEeccCCCCCeEEEeCCCEEEEEECCCcccee------------eeccccceeEEEE-eCCCceEEeecCCcC-
Confidence 344444433 3344444445667888899999776321 2334444555455 999999999877777
Q ss_pred CCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEE-EecCCCCcEEEEEEcCC
Q 016134 151 ECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEF-SLDGPVGEVYSMVVANE 224 (394)
Q Consensus 151 ~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~-~~~~~~~~v~~l~~~~~ 224 (394)
.|||||... ...+..+++.-.++|.+|+|+.|+++|+..++.+. ++-++++..+ .+.+|...|.++.|.|.
T Consensus 82 ---~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 ---KVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred ---cEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 999999965 55667788888999999999999999998887665 3444466655 78899999999999887
Q ss_pred ---EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc---CCCCCc
Q 016134 225 ---MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN---DHTDAP 278 (394)
Q Consensus 225 ---~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~h~~~v 278 (394)
++++++.| .|..-|.|+.|+ ++++++++.||+|.|||-.+++.+..|. +|.+.|
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 78888887 699999999998 7899999999999999999999999998 899999
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134 279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG 356 (394)
Q Consensus 279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~ 356 (394)
.++.|+ +..|++++.|.+++|||+.+.+.++++..... ..-+.+-+.|. .. .|++-+.+|+|.+++......+.
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWq--kd-~lItVSl~G~in~ln~~d~~~~~ 314 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQ--KD-HLITVSLSGTINYLNPSDPSVLK 314 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEe--CC-eEEEEEcCcEEEEecccCCChhh
Confidence 999999 78999999999999999999988887765443 22333333344 33 68889999999999999998766
Q ss_pred EEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 357 RIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 357 ~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+.+ ...|+++..+|++ +|++|+.||.|.-|++.+.
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 6665 6789999999999 9999999999999998754
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=6.2e-29 Score=214.87 Aligned_cols=269 Identities=19% Similarity=0.249 Sum_probs=229.3
Q ss_pred CccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC
Q 016134 115 ASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR 194 (394)
Q Consensus 115 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~ 194 (394)
-..+.....||+..|.... |.|++.+++++..|- .|.+|++....+-...+++|+++|..+.|.+|+..|++++.
T Consensus 36 l~ap~m~l~gh~geI~~~~-F~P~gs~~aSgG~Dr----~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIK-FHPDGSCFASGGSDR----AIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred ccchhhhcCCCcceEEEEE-ECCCCCeEeecCCcc----eEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence 3444567889999999999 999999998766655 99999986666778889999999999999999999999999
Q ss_pred CCc--eeecCCCcEE-EecCCCCcEEEEEEcCC---EEEEEecC-----------------CCCCCEEEEEec--CCeEE
Q 016134 195 DGT--AWNIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQD-----------------GHTRPVTCLAVG--RSRLC 249 (394)
Q Consensus 195 Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~ 249 (394)
|.+ .||+++++.. +...|..-|..+....- ++.+++.| ...-+++++.|. ...++
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 999 4999999987 67788888888874332 66666666 224578888997 68899
Q ss_pred EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC----CceeeEeecccCCcceEEE
Q 016134 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG----RGNLEAAYTHKEDNGVLAL 323 (394)
Q Consensus 250 sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~ 323 (394)
+|+-|+.|++||++.....+.+.+|.+.|+.+..+ |.++++-+.|.++++||++. ..++..+..+........+
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 99999999999999999999999999999999988 89999999999999999984 3456667776655555556
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
.+.|+|++. .+..|+.|..+++||......+..+++ ...|++++|+|.. .|.+++.|.+|.+=++
T Consensus 271 ~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 271 KCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eeeccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 667899999 889999999999999999888888877 6779999999999 9999999999987544
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-30 Score=227.44 Aligned_cols=244 Identities=21% Similarity=0.291 Sum_probs=208.5
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW 199 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW 199 (394)
..|+...|+.+- +.|....+++++.++ +|++||..++ ++...|+||++.|.+|+|+..|++|++++.|-. +|
T Consensus 104 l~g~r~~vt~v~-~hp~~~~v~~as~d~----tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 104 LAGHRSSVTRVI-FHPSEALVVSASEDA----TIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred hhccccceeeee-eccCceEEEEecCCc----eEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 447778888888 889888887766665 9999999998 779999999999999999999999999999986 69
Q ss_pred ecCCC-cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Q 016134 200 NIESS-AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276 (394)
Q Consensus 200 d~~~~-~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~ 276 (394)
|.++. ++.+ +.-+|...|.++.|- ++++++++.|.+|+.|++.++.++++|.+|..
T Consensus 178 d~~~~~~c~k---------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 178 DFDTFFRCIK---------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred eHHHHHHHHH---------------------HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH
Confidence 98763 2221 111677777787775 79999999999999999999999999999999
Q ss_pred CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee-ECC---------CCCcEEEEEeCCCeE
Q 016134 277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL-NDP---------DGKPVLICACNDNTV 344 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~s~---------~g~~~l~sgs~dg~I 344 (394)
.|..+... |.++++|+.|.+|++|-+.+.++...+..|+.+..++++... +.| ++..++++++.|++|
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 99999988 789999999999999999998888888888877776665421 011 223499999999999
Q ss_pred EEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 345 HLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 345 ~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++||+.++.++.++.. ...|..++|+|.| +|+++.+|+++++||++..
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 9999999999999887 7789999999999 9999999999999999875
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.8e-28 Score=256.15 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=207.1
Q ss_pred CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc-ccccCCCeecCCCCC
Q 016134 75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECR 153 (394)
Q Consensus 75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~ 153 (394)
..+|++ ++..+++|+.|++|+|||.+.......... .+.....+...+..+. |++. +.++++++.+|
T Consensus 488 ~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~v~~l~-~~~~~~~~las~~~Dg---- 555 (793)
T PLN00181 488 AIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIH-----YPVVELASRSKLSGIC-WNSYIKSQVASSNFEG---- 555 (793)
T ss_pred EEEECC--CCCEEEEEeCCCEEEEEECCcccccccccc-----cceEEecccCceeeEE-eccCCCCEEEEEeCCC----
Confidence 345555 777899999999999999864321110000 0000111233566777 7663 56777666555
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA 230 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 230 (394)
+|++||+.++ +.+..+.+|.+.|++++|+| ++.+|+||+.|++ +||+.++..+...
T Consensus 556 ~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------- 614 (793)
T PLN00181 556 VVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------- 614 (793)
T ss_pred eEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------
Confidence 9999999887 78889999999999999997 7899999999999 6999887765321
Q ss_pred cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCC
Q 016134 231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
.+...|.++.|. +.+|++|+.|+.|++||+++.+ ++..+.+|...|.++.|. +.+|++++.|++|++||++..
T Consensus 615 --~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 615 --KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred --ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 122457777773 6789999999999999998765 577888999999999997 789999999999999999743
Q ss_pred ------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--------------cCCcEE
Q 016134 306 ------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--------------SKHEVR 365 (394)
Q Consensus 306 ------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------------~~~~v~ 365 (394)
..+..+..|......+ .+++++. +|++|+.|+.|++|+......+..+. +...|.
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v----~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFV----GLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEE----EEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 3455555555433333 3588888 99999999999999987654332211 134599
Q ss_pred EEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 366 VIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 366 ~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
+++|+|++ +|++|+.||.|+||++
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999 9999999999999997
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=228.62 Aligned_cols=243 Identities=20% Similarity=0.296 Sum_probs=202.1
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
|..+|+||+-|+||+|||.++-.+.. ...||...|-++. + |...+ ++|+.|.+|+|||+++
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~------------~L~GHtGSVLCLq-y--d~rvi----isGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLK------------ILTGHTGSVLCLQ-Y--DERVI----VSGSSDSTVRVWDVNT 266 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHH------------hhhcCCCcEEeee-c--cceEE----EecCCCceEEEEeccC
Confidence 77799999999999999999766532 5778888888776 3 23344 4566666999999999
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecC----
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQD---- 232 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~---- 232 (394)
+ +++.++.+|...|..+.|+ ..+++|++.|.+ |||+...... .+.+|...|+.+.|...++++++.|
T Consensus 267 g-e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTik 343 (499)
T KOG0281|consen 267 G-EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 343 (499)
T ss_pred C-chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEE
Confidence 8 9999999999999999996 569999999999 6999887654 3578999999999999999988887
Q ss_pred --------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEE
Q 016134 233 --------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIK 298 (394)
Q Consensus 233 --------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~ 298 (394)
+|...|-|+.+.+.++++|+.|.+|++||+..|.+++.+++|..-|.++.|+.+.+++|+.||+|+
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkik 423 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 423 (499)
T ss_pred EEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcee---------eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134 299 VWFATGRGNL---------EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME 354 (394)
Q Consensus 299 vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~ 354 (394)
+||+...... ..+..|.. .+. ...| |.. .+++++.|.+|-|||..++..
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsg--RVF--rLQF--D~f-qIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSG--RVF--RLQF--DEF-QIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccc--eeE--EEee--cce-EEEeccCCCeEEEEEcCCCCc
Confidence 9999765432 12222222 222 2234 333 688889999999999987643
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=208.95 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=198.7
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW 199 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW 199 (394)
..+++.+|+.+. ++.+++|..+.. .|++|++|++..+ .+++++.+|..+|.+++.+.|...|++|+.|+. +|
T Consensus 13 l~~~qgaV~avr-yN~dGnY~ltcG----sdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 13 LDCAQGAVRAVR-YNVDGNYCLTCG----SDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ecccccceEEEE-EccCCCEEEEcC----CCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 446677899998 999999976554 4559999999888 899999999999999999999999999999998 69
Q ss_pred ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC--CceeEEEcCCC
Q 016134 200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT--LEPVMTLNDHT 275 (394)
Q Consensus 200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~--~~~~~~~~~h~ 275 (394)
|+++|+..+. +.+|...|+.++|+ ...+++|+.|.++++||.++ .++++.+....
T Consensus 87 DV~TGkv~Rr---------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 87 DVNTGKVDRR---------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred EcccCeeeee---------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9999998742 22677778888887 46799999999999999876 56899998889
Q ss_pred CCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 276 ~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
+.|.++...+..|++|+.||++|.||++.+........++ +..+ +|+++++ .++.++.|++|++.|-.+++++
T Consensus 146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~p--it~v----s~s~d~n-c~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP--ITSV----SFSKDGN-CSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred CceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCc--ceeE----EecCCCC-EEEEeeccceeeecccchhHHH
Confidence 9999999999999999999999999999987766655543 3333 3699999 7888999999999999999998
Q ss_pred EEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 356 GRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 356 ~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.+ ...-...+++... .+++|++||.|.+||+..+
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 88776 1223334455555 9999999999999998765
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=238.92 Aligned_cols=238 Identities=26% Similarity=0.370 Sum_probs=198.9
Q ss_pred ccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134 126 KSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE 202 (394)
Q Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~ 202 (394)
...|.++. +++++.++++++.++ .+++|+..+.. ..++.+.+|...|.+++|+|++++|++++.|++ |||++
T Consensus 159 ~~sv~~~~-fs~~g~~l~~~~~~~----~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVD-FSPDGRALAAASSDG----LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEE-EcCCCCeEEEccCCC----cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 57888888 999999999888877 99999996552 277888999999999999999999999999999 69994
Q ss_pred -CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcE
Q 016134 203 -SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279 (394)
Q Consensus 203 -~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~ 279 (394)
.+..+. ...+|...|++++|+ ++++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 234 ~~~~~~~---------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 234 DDGRNLK---------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCeEEE---------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 434442 223788888888887 68999999999999999999999999999999999
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEeCCCc--eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 280 SLLCW--DQFLLSCSLDHTIKVWFATGRG--NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
+++|. +.+|++++.|+.|++||+.++. +...+..+.... ....+.|+|+++ +|+++..|+.+++||+..+..+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA--PVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC--ceeEEEECCCCc-EEEEecCCCeEEEEEccCCcce
Confidence 99999 7899999999999999999887 345555544432 333456899999 8999999999999999998887
Q ss_pred EEEec-CC---cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 356 GRIFS-KH---EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 356 ~~~~~-~~---~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.. .. .+.+...++.+ ++++|+.|+.|.+|++.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 77665 22 34444556677 9999999999999999864
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=221.29 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=219.2
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-- 197 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-- 197 (394)
...|...|--+. |++.|.|+|+++.+. +..||++. ...++..++.+|..+|..|.|+||.++|++|+.|..
T Consensus 220 l~~htdEVWfl~-FS~nGkyLAsaSkD~----Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 220 LQDHTDEVWFLQ-FSHNGKYLASASKDS----TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred HhhCCCcEEEEE-EcCCCeeEeeccCCc----eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 346677888888 999999999887666 88999873 446789999999999999999999999999999988
Q ss_pred eeecCCCcEEEecCC--CCcEEEEEEcCC--EEEEEecCC------------------CCCCEEEEEec--CCeEEEEeC
Q 016134 198 AWNIESSAEFSLDGP--VGEVYSMVVANE--MLFAGAQDG------------------HTRPVTCLAVG--RSRLCSGSM 253 (394)
Q Consensus 198 vWd~~~~~~~~~~~~--~~~v~~l~~~~~--~l~~~~~~~------------------h~~~V~~l~~~--~~~l~sgs~ 253 (394)
+||+.++.......+ ...+.+.+|.|| .+++|+.|. ....|.+++.. |.++++...
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 699999998865444 478999999999 888888771 23458888875 888999999
Q ss_pred CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134 254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331 (394)
Q Consensus 254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 331 (394)
|..|++|+.++......+. ...+|+++..+ ++++++--.+..+++||+.....++.+.+|+....++.- ||--..
T Consensus 375 d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~ 451 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGN 451 (519)
T ss_pred ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe--ccCCCC
Confidence 9999999998766665444 34689999988 678888888999999999988888888888876555543 354434
Q ss_pred CcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 332 KPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
..++++|++|+.|+||+..+++++..+.+ ...|++++|+|.. ++|+++.||+|+||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 34999999999999999999999999887 6679999999988 999999999999998764
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=235.09 Aligned_cols=285 Identities=20% Similarity=0.283 Sum_probs=243.2
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
..++.+.-..|+.+.++|.++..... ...|....|....++.|...++|.+..++ .+|+++..+
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k------------~ivG~ndEI~Dm~~lG~e~~~laVATNs~----~lr~y~~~~ 355 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVK------------QIVGYNDEILDMKFLGPEESHLAVATNSP----ELRLYTLPT 355 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEeh------------hhcCCchhheeeeecCCccceEEEEeCCC----ceEEEecCC
Confidence 33444556789999999988777543 34566668888888899999999888888 899998877
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-----EecCCCCcEEEEEEcCC---EEEEEecC
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-----SLDGPVGEVYSMVVANE---MLFAGAQD 232 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~~~~~ 232 (394)
. .+ +.+.||+..|.++....+|.+|+||+.|.+ +|.++.+... ...+|...|.+++++.. ++++++.|
T Consensus 356 ~-~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 356 S-YC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred C-ce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 5 33 388999999999997778899999999999 6988655443 34789999999999754 88888877
Q ss_pred ---------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134 233 ---------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 233 ---------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 283 (394)
.|...|+|++++ ..+++|||.|++.+||+++..+.+.+|.+|...|.++.|
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 699999999997 578999999999999999999999999999999999999
Q ss_pred c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS- 360 (394)
Q Consensus 284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 360 (394)
+ ++.++|+|.|.+|+||.+.+..+++++.+|...+- .+.|-.+++ .|++++.||.|+||++.+.+++..+..
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl----ra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL----RASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeE----eeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 9 67999999999999999999999999998875433 334566787 899999999999999999999988875
Q ss_pred CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.+.|++++.++.. +++||+.||.|.+|.=.
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 7889999999998 99999999999999633
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=3.2e-28 Score=221.66 Aligned_cols=259 Identities=22% Similarity=0.292 Sum_probs=213.1
Q ss_pred Cccceeeecccccccc-ccCCCeecCCCCCeEEEEEcCCC-ceE--EEEec------c----cCCCeEEEEecCCCCEEE
Q 016134 125 DKSTSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEG-LTM--LAKLE------G----HEKAVSGIALPLRSDKLF 190 (394)
Q Consensus 125 ~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~-~~~--~~~l~------~----h~~~V~~l~~s~~~~~l~ 190 (394)
|+..|...+ |+|... .++ +|+.+.+.++|++... ... +..|+ + -...|++|+|+.+|..||
T Consensus 177 ~~~~V~~~~-WnP~~~~lla----sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 177 HESEVFICA-WNPLRDGLLA----SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred CCCceEEEe-cCchhhhhhh----ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 667777777 998665 444 4455558999998641 111 11111 1 246899999999999999
Q ss_pred EEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec-CCe
Q 016134 191 SGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG-RSR 247 (394)
Q Consensus 191 sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~-~~~ 247 (394)
+|+.||. ||+........+..|.++|.++.|+.. +|++++.| -|..+-..+.|- .+.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 9999999 799988888889999999999999987 78888877 244444556665 678
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEe
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGG 325 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 325 (394)
|++++.|+.|+|+.+....++.++.+|.++|.++.|+ +.+|++||.|++++||..........+..|...+..+.
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~--- 408 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK--- 408 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe---
Confidence 9999999999999999999999999999999999999 89999999999999999988888888888875543333
Q ss_pred eECCCC--------CcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 326 LNDPDG--------KPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 326 ~~s~~g--------~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|+|.| ...|++++.|++|++||+..+.++..+ .|..+|.+++|+|++ ++|+|+.||.|.+|++++.
T Consensus 409 -wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 409 -WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred -ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 34433 337999999999999999999999988 568899999999999 9999999999999998764
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=208.02 Aligned_cols=259 Identities=20% Similarity=0.267 Sum_probs=216.6
Q ss_pred cCCCCccceeeecccc---ccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134 121 DESGDKSTSKKTTLKN---VCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~---~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 197 (394)
.-.||.+.|-.++ ++ |+++++.++|-+|... +-+-+++ .-+.+|.||+++|+...++.+..+-++++.|-+
T Consensus 9 ~c~ghtrpvvdl~-~s~itp~g~flisa~kd~~pm----lr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 9 TCHGHTRPVVDLA-FSPITPDGYFLISASKDGKPM----LRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred EEcCCCcceeEEe-ccCCCCCceEEEEeccCCCch----hccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 3458889999988 77 5899999999888542 2222344 678999999999999999999999999999987
Q ss_pred --eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec--CCeEEEEe
Q 016134 198 --AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs 252 (394)
|||.-++..+....|.--|.+++|+.| .|++|+.+ +|++.|..+.|. .+.|++.+
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 899999999877788889999999998 88898877 899999999995 67788889
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134 253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331 (394)
Q Consensus 253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 331 (394)
.|++||+||.++++.++++. ...+|+++.++ ...+++-...+.|++||..+-+.++..... ..+...+ .+|+.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SAS----L~P~k 236 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESAS----LHPKK 236 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-ccccccc----ccCCC
Confidence 99999999999999999997 56789999998 556667777889999999887666554432 1223333 48888
Q ss_pred CcEEEEEeCCCeEEEEECCCCceeEEE-e-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 332 KPVLICACNDNTVHLYELPSFMERGRI-F-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
. ++++|++|..++.||..+++.+..+ . +.++|.|+.|+|+| ..++||+||+|+||.+...
T Consensus 237 ~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 237 E-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred c-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 6 9999999999999999999988875 2 36789999999999 9999999999999987654
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=7.7e-28 Score=235.43 Aligned_cols=249 Identities=29% Similarity=0.458 Sum_probs=218.7
Q ss_pred ccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCC
Q 016134 137 VCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPV 213 (394)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~ 213 (394)
.|.++.-..+..++.+.+|++||..++..+...+.||.+.|.++++...+.+|++|+.|.+ |||..++++. .+.+|.
T Consensus 212 ~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~ 291 (537)
T KOG0274|consen 212 LCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT 291 (537)
T ss_pred hhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC
Confidence 3444555567788888899999999996666669999999999999877899999999999 7999999998 678899
Q ss_pred CcEEEEEEcCCEEEEEecC------------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134 214 GEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275 (394)
Q Consensus 214 ~~v~~l~~~~~~l~~~~~~------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~ 275 (394)
..|.++...+..++.|+.| +|..+|.++..++.++++|+.|++|+|||+.++++++++.+|.
T Consensus 292 stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 292 SSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred ceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 9999999988888887777 6999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcC-CEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 276 DAPMSLLCWD-QFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 276 ~~v~~l~~~~-~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
..|+++.+.+ +.+++|+.|++|++||+++. +++..+..|..-...+ ...++ +|++++.|++|++||..+++
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l------~~~~~-~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL------LLRDN-FLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc------ccccc-eeEeccccccEEEeecccCc
Confidence 9999999998 99999999999999999998 8888887776544322 23455 89999999999999999999
Q ss_pred eeEEEecC--CcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 354 ERGRIFSK--HEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 354 ~~~~~~~~--~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.+..+... ..|.++++. +..+++++.|+.+++||+.+..
T Consensus 445 ~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 445 CLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred eeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 99988873 678888887 3489999999999999998753
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=227.26 Aligned_cols=256 Identities=20% Similarity=0.353 Sum_probs=212.5
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~ 204 (394)
..|..+. ++.-|.|+|-+|.- -+.+-||+...+ ..+...++|...|++++++|||++||||+.||. |||..++
T Consensus 308 ~~I~t~~-~N~tGDWiA~g~~k---lgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 308 QKILTVS-FNSTGDWIAFGCSK---LGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ceeeEEE-ecccCCEEEEcCCc---cceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 3566777 99999999987754 458999999877 677788999999999999999999999999999 6999999
Q ss_pred cEE-EecCCCCcEEEEEEcCC--EEEEEecCC-------------------CCCCEEEEEec--CCeEEEEeCCC-eEEE
Q 016134 205 AEF-SLDGPVGEVYSMVVANE--MLFAGAQDG-------------------HTRPVTCLAVG--RSRLCSGSMDN-TIRV 259 (394)
Q Consensus 205 ~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~~-------------------h~~~V~~l~~~--~~~l~sgs~Dg-~V~i 259 (394)
-|+ ++..|...|..+.|+.. .+++.+.|| ......|++.+ |.+++.|+.|. .|.|
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 987 88999999999999876 888888882 23345567776 78888888876 7999
Q ss_pred EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134 260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC 337 (394)
Q Consensus 260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s 337 (394)
|++++|+.+-.+.+|.++|.+++|+ ++.|+++|.|.+||+||+-............ ..++.+.|.|+|+ -|++
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~----sdvl~vsfrPdG~-elaV 537 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR----SDVLAVSFRPDGK-ELAV 537 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec----cceeEEEEcCCCC-eEEE
Confidence 9999999999999999999999988 8999999999999999987643222222222 2334445799999 8999
Q ss_pred EeCCCeEEEEECCCCceeEEEec---------------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 338 ACNDNTVHLYELPSFMERGRIFS---------------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 338 gs~dg~I~iwd~~~~~~~~~~~~---------------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+..||.|.+||...+.....+.. ....+.+++++|| .|++|+....|++|++.++
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999999987765544321 2458999999999 9999999999999998764
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.4e-28 Score=236.88 Aligned_cols=266 Identities=20% Similarity=0.299 Sum_probs=212.1
Q ss_pred cccccccccCCCCCcccccccCCCCCCC----------CCC---------CCCCccccccCCCCccceeeeccccccccc
Q 016134 81 LKNNLWVSSGSEDRIPHVRNRENPGYTG----------PKN---------SSSASSTVSDESGDKSTSKKTTLKNVCCHW 141 (394)
Q Consensus 81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~----------~~~---------s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~ 141 (394)
..+++.+|-|=.|..|++|.+...++.. .++ -..+........||.+.|-... |+|+..|
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s-FsPd~rf 465 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS-FSPDRRF 465 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee-ecccccc
Confidence 3377777777779999999998533110 000 0011111223669999999999 9999999
Q ss_pred cCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEE
Q 016134 142 LLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM 219 (394)
Q Consensus 142 ~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l 219 (394)
|.+.+-|+ +||+|.+.+. ..+..++||..+|.++.|+|.|-++||+|.|++ +|..+....+++
T Consensus 466 LlScSED~----svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi---------- 530 (707)
T KOG0263|consen 466 LLSCSEDS----SVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI---------- 530 (707)
T ss_pred eeeccCCc----ceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh----------
Confidence 98665555 9999999886 888899999999999999999999999999999 899887665542
Q ss_pred EEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 220 VVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 220 ~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
.-+|.+.|.|+.|+ .+++++||.|.+||+||..++..++.|.+|.++|.+++|+ |.+|++|+.|+
T Consensus 531 -----------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 531 -----------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred -----------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 11788888888887 5789999999999999999999999999999999999999 99999999999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce---------------------
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--------------------- 354 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--------------------- 354 (394)
.|++||+.++..+..+..|...+ .++ .|+.+|. +||+|+.|++|++||+..-..
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti--~Sl--sFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTI--YSL--SFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNAS 674 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCce--eEE--EEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCC
Confidence 99999999999999999885433 333 3689999 999999999999999865322
Q ss_pred ---eEEEec-CCcEEEEEECCCC-EEEEE
Q 016134 355 ---RGRIFS-KHEVRVIEIGPDK-LFFTG 378 (394)
Q Consensus 355 ---~~~~~~-~~~v~~l~~sp~~-~l~tg 378 (394)
+..+.. ..+|..+.|...+ .|+.|
T Consensus 675 ~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 675 SLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cceeeeeeecCceEEEEEEeccceeEEec
Confidence 222222 4468888888777 44444
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=7.3e-29 Score=222.57 Aligned_cols=274 Identities=17% Similarity=0.181 Sum_probs=224.4
Q ss_pred CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134 73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC 152 (394)
Q Consensus 73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~ 152 (394)
-+.+.|-+ .+..+++|+.|+.|++||+....+..+. ...|....+.++. +.+.+.++.++..++
T Consensus 178 v~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~~----------tLaGs~g~it~~d-~d~~~~~~iAas~d~--- 241 (459)
T KOG0288|consen 178 VHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELIS----------TLAGSLGNITSID-FDSDNKHVIAASNDK--- 241 (459)
T ss_pred cceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhhh----------hhhccCCCcceee-ecCCCceEEeecCCC---
Confidence 45556666 7789999999999999999988855444 5778888899999 777777777676666
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA 230 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 230 (394)
.+++|++... +...+|.||++.|+++.|......+++|+.|.+ +||+....+....-.
T Consensus 242 -~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~------------------ 301 (459)
T KOG0288|consen 242 -NLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP------------------ 301 (459)
T ss_pred -ceeeeeccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc------------------
Confidence 8999999887 889999999999999999887777999999999 599999877643222
Q ss_pred cCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134 231 QDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL 308 (394)
Q Consensus 231 ~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~ 308 (394)
...+.+|...+..+++|..|++||.||+++..+......+. .|+++..+ +..|++++.|.++.+.|+++.+..
T Consensus 302 ----~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 302 ----GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR 376 (459)
T ss_pred ----cccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence 22344445556779999999999999999999999988764 89999887 778999999999999999988777
Q ss_pred eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CC-cEEEEEECCCC-EEEEEeCCCeE
Q 016134 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KH-EVRVIEIGPDK-LFFTGDGAGML 384 (394)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~-~v~~l~~sp~~-~l~tgs~Dg~I 384 (394)
..+.........-...++|+|++. |+++|+.||.|+||++.++++...+.. .. .|++++|+|.| .|++++.++.+
T Consensus 377 ~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 666543322222223445899999 999999999999999999988887766 22 59999999999 99999999999
Q ss_pred EEEe
Q 016134 385 GVWK 388 (394)
Q Consensus 385 ~vWd 388 (394)
.+|.
T Consensus 456 ~lW~ 459 (459)
T KOG0288|consen 456 TLWT 459 (459)
T ss_pred EecC
Confidence 9993
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.4e-27 Score=224.86 Aligned_cols=300 Identities=17% Similarity=0.241 Sum_probs=236.0
Q ss_pred CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134 72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE 151 (394)
Q Consensus 72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~ 151 (394)
......|+. |+-.+++||-|.++|||.++...-... .-..||+..|-... |..+..-+.+.+-
T Consensus 147 di~si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~----------~~l~gHkd~Vvacf-F~~~~~~l~tvsk---- 209 (893)
T KOG0291|consen 147 DITSIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFT----------YALNGHKDYVVACF-FGANSLDLYTVSK---- 209 (893)
T ss_pred ceeEEEecc--CCceEEeccccceEEEEEeccccccce----------EeccCCCcceEEEE-eccCcceEEEEec----
Confidence 345667777 999999999999999999985442111 13567776666554 6555555554444
Q ss_pred CCeEEEEEcCC-----------------------Cce-----E-----EEEecccCCCeEEEEecCCCCEEEEEeCCCc-
Q 016134 152 CRFLHSWFCGE-----------------------GLT-----M-----LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT- 197 (394)
Q Consensus 152 ~~~i~iWd~~~-----------------------~~~-----~-----~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~- 197 (394)
||.|.+|.... +.+ . ..-+......|++.+|++..+.|++|=..|.
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 44999998750 101 0 1111223478999999999999999999998
Q ss_pred -eeecCCCcEE-EecCCCCcEEEEEEc--CCEEEEEecC-------------------CCCCCEEEEEec--CCeEEEEe
Q 016134 198 -AWNIESSAEF-SLDGPVGEVYSMVVA--NEMLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 198 -vWd~~~~~~~-~~~~~~~~v~~l~~~--~~~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs 252 (394)
++++..-.++ .+.-...+|..++|+ .+.++.|+.. +|...+++++++ ++++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 6888887776 344445678888888 5577777655 899999999998 67999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134 253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD 330 (394)
Q Consensus 253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 330 (394)
.||+|+|||..++-|+.+|..|+..|+.+.|. ++.+++.+.||+|+.||+...++.+++.... .....+++.+|.
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~---p~QfscvavD~s 446 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE---PIQFSCVAVDPS 446 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC---ceeeeEEEEcCC
Confidence 99999999999999999999999999999999 8999999999999999998887777665432 333334445888
Q ss_pred CCcEEEEEeCCC-eEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 331 GKPVLICACNDN-TVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 331 g~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|. +++.|+.|. .|++|++++++++-.+.+ +++|.+++|+|++ .|+++|.|.+|++||+-..
T Consensus 447 Ge-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 447 GE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CC-EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 98 777777765 599999999999988876 8899999999999 9999999999999998654
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.2e-26 Score=210.80 Aligned_cols=256 Identities=27% Similarity=0.371 Sum_probs=212.7
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW 199 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW 199 (394)
..+|...|.++. +++++.+++++..+| .|++|+..++ +....+..|...+..+.|.+++++|++++.|+. +|
T Consensus 5 ~~~h~~~i~~~~-~~~~~~~l~~~~~~g----~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 5 LKGHTGGVTCVA-FSPDGKLLATGSGDG----TIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred hcccCCCEEEEE-EcCCCCEEEEeecCc----EEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 347888999999 999988888766554 9999999876 577888899999999999999999999999998 69
Q ss_pred ecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEecC--CeEEEEeCCCe
Q 016134 200 NIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNT 256 (394)
Q Consensus 200 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~~--~~l~sgs~Dg~ 256 (394)
|+++++.. .+..+...+.++.|.++ .++++..+ .|...|.++.|++ .++++++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 99986554 56677789999999986 55555523 4778899999984 66777777999
Q ss_pred EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134 257 IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 257 V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 334 (394)
|++||+++++++..+..|...+.++.+. ++.+++++.|+.|++||++..+.+..+..+.... .. ..++|++. +
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~--~~~~~~~~-~ 233 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV--NS--VAFSPDGY-L 233 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCce--EE--EEEcCCCc-E
Confidence 9999999999999999999999999998 4589999999999999998877766665554332 22 34688866 8
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 335 LICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
+++++.|+.|++||+.+++....+.. ...|.+++|+|++ +|++++.|+.|++|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88888899999999998877776654 5579999999998 999999999999996
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=201.13 Aligned_cols=273 Identities=17% Similarity=0.183 Sum_probs=217.8
Q ss_pred CCCCcccccc-cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134 73 KSPPSYNRLK-NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE 151 (394)
Q Consensus 73 ~~~~~~~~~~-~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~ 151 (394)
+++....+|. ++.+.++.+.||++|+||...+.+.. ...||...|..++ .+.+..-++ +++.
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik------------tYsghG~EVlD~~-~s~Dnskf~----s~Gg 79 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK------------TYSGHGHEVLDAA-LSSDNSKFA----SCGG 79 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccceee------------eecCCCceeeecc-ccccccccc----cCCC
Confidence 3444433322 88899999999999999999988764 5678888888777 554444444 4566
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 229 (394)
|+.|.+||++++ +.++.+.+|.+.|+.++|+.+...+++|+.|.+ +||-++.....+.
T Consensus 80 Dk~v~vwDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ------------------- 139 (307)
T KOG0316|consen 80 DKAVQVWDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ------------------- 139 (307)
T ss_pred CceEEEEEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------------------
Confidence 779999999999 999999999999999999999999999999999 5998876543221
Q ss_pred ecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134 230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 230 ~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
..+.....|.++...+..|+.|+.||++|.||++.++.....-+| +|+++.|+ ++..+.++.|++|++.|-.+++.
T Consensus 140 ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 112446788889999999999999999999999999887766555 89999998 88999999999999999999999
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCc--EEEEEECCCC-EEEEEeCCCeE
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRVIEIGPDK-LFFTGDGAGML 384 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--v~~l~~sp~~-~l~tgs~Dg~I 384 (394)
+....+|...... +..+++.... .+++|++||.|++||+.....+..+..... |..++++|.- .|+++.. +.+
T Consensus 218 L~sYkGhkn~eyk--ldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~ 293 (307)
T KOG0316|consen 218 LKSYKGHKNMEYK--LDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGD 293 (307)
T ss_pred HHHhcccccceee--eeeeecccce-eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cce
Confidence 9998888754433 3334555555 899999999999999999998888877433 7899999987 5656544 345
Q ss_pred EEEe
Q 016134 385 GVWK 388 (394)
Q Consensus 385 ~vWd 388 (394)
.+|.
T Consensus 294 ~~~~ 297 (307)
T KOG0316|consen 294 LFWY 297 (307)
T ss_pred ecee
Confidence 5553
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.5e-28 Score=226.21 Aligned_cols=251 Identities=21% Similarity=0.328 Sum_probs=225.0
Q ss_pred CccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134 125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE 202 (394)
Q Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~ 202 (394)
+...|+++. +.|-..|+..+.++| .|.||+.++. .+++.++-..-+|.+..|-+..+.+++|+.|.. |++..
T Consensus 12 rSdRVKsVd-~HPtePw~la~LynG----~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 12 RSDRVKSVD-FHPTEPWILAALYNG----DVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred cCCceeeee-cCCCCceEEEeeecC----eeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 334789999 999999999999999 8999999887 888999999999999999999999999999998 69999
Q ss_pred CCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec---CCeEEEEeCCCeE
Q 016134 203 SSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG---RSRLCSGSMDNTI 257 (394)
Q Consensus 203 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V 257 (394)
+++.+ .+..|..-|.+++.+|. .+++++.| +|+..|.+++|+ .+.+++++.|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 99887 78899999999999998 88888777 899999999998 5789999999999
Q ss_pred EEEeCCCCceeEEEcCCCCCcEEEEEc-C---CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134 258 RVWELDTLEPVMTLNDHTDAPMSLLCW-D---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333 (394)
Q Consensus 258 ~iwd~~~~~~~~~~~~h~~~v~~l~~~-~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 333 (394)
+||.+.+..+..++++|...|.++.|. + .+|++|+.|.+|+|||..+..+++++.+|...+...+ |+|.-.
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~----fhp~lp- 240 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF----FHPELP- 240 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE----ecCCCc-
Confidence 999999999999999999999999998 3 4999999999999999999999999999987665444 588877
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 334 VLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
++++|++||+++||+..+.++...+.- ...|++++-.+.+ .++.|.+.|.|.+
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999877766654 6789999988877 8888888887654
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.9e-28 Score=222.68 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=191.1
Q ss_pred cCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134 121 DESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-- 197 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-- 197 (394)
...||.+.|+++. |-| .+.+++++..++ .|+||++-....+++++.+|..+|.+++|+++|..|+|++.|+.
T Consensus 209 ~~~gH~kgvsai~-~fp~~~hLlLS~gmD~----~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQ-WFPKKGHLLLSGGMDG----LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhh-hccceeeEEEecCCCc----eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 3569999999999 666 777777666555 99999998766999999999999999999999999999999999
Q ss_pred eeecCCCcEEEecCCCCcEEEEEEcCC---EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCC
Q 016134 198 AWNIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMD 254 (394)
Q Consensus 198 vWd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~D 254 (394)
+||+++|+++........++++.|.|+ .+++|..+ .|-+.|..+.|- +.++++.+.|
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 699999999876666666777777765 45555544 355566666663 5556666666
Q ss_pred CeEEEEeCCCCceeEEE---cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCce---eeEeecccCCcceEEEEeeEC
Q 016134 255 NTIRVWELDTLEPVMTL---NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGN---LEAAYTHKEDNGVLALGGLND 328 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~s 328 (394)
++++||+.+..-+++.+ ..|+-+...+...++.++.-+.|+.|.++.+...-. .+.+.+|. ..-.++.+.|+
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~--vaGys~~v~fS 441 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS--VAGYSCQVDFS 441 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee--ccCceeeEEEc
Confidence 66666666554433322 224333333333356666666666666665432211 12223333 23344556799
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWK 388 (394)
Q Consensus 329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd 388 (394)
|||. +|++|..||.+.+||.++-+++..+.. ...+..+.|+|.. .+||++.||.|++|+
T Consensus 442 pDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCC-eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999 999999999999999999988888876 5789999999987 999999999999996
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-27 Score=209.74 Aligned_cols=253 Identities=23% Similarity=0.292 Sum_probs=208.9
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC---CCCEEEEEeCCCc--e
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--A 198 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--v 198 (394)
-|.-.|.++. -. ..|+.++|++| ++||||... +.+.++.||.++|.+++|.- ....|++++.|.+ +
T Consensus 103 ~hdDWVSsv~-~~--~~~IltgsYDg----~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 103 LHDDWVSSVK-GA--SKWILTGSYDG----TSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred cchhhhhhhc-cc--CceEEEeecCC----eeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 3445666665 33 78999999998 999999854 67889999999999998843 3346999999999 5
Q ss_pred eecCCCcEE-----EecCCCCcEEEEEEcCC--EEEEEecC---------------------------------------
Q 016134 199 WNIESSAEF-----SLDGPVGEVYSMVVANE--MLFAGAQD--------------------------------------- 232 (394)
Q Consensus 199 Wd~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~~--------------------------------------- 232 (394)
|.++.++.. ...+|...|.++...++ .+++|+.|
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 888776654 23589999999998877 88888887
Q ss_pred ----CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134 233 ----GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 233 ----~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
+|+.+|.++.|. ...+++++.|.+|+.||+.++.++.++.+ ...+.++.+. ..+|++|+.|..|++||.+++
T Consensus 254 vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 899999999998 67899999999999999999999888874 4678899988 679999999999999999875
Q ss_pred c---eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEEEec-CCcEEEEEECCCCEEEEEeC
Q 016134 306 G---NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGRIFS-KHEVRVIEIGPDKLFFTGDG 380 (394)
Q Consensus 306 ~---~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-~~~v~~l~~sp~~~l~tgs~ 380 (394)
. ..+.+.+|..-+..+ .|+|...++|++++.|+++++||+++.. ++..+.. .+.|.++.|...++|++|+.
T Consensus 333 ~gs~v~~s~~gH~nwVssv----kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGa 408 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSV----KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGA 408 (423)
T ss_pred CCceeEEeeecchhhhhhe----ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccC
Confidence 3 334455565543333 3589998899999999999999999876 6666654 77899999997779999999
Q ss_pred CCeEEEEeCC
Q 016134 381 AGMLGVWKLL 390 (394)
Q Consensus 381 Dg~I~vWd~~ 390 (394)
|.+|+|+.-.
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999998743
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=196.18 Aligned_cols=239 Identities=22% Similarity=0.311 Sum_probs=191.3
Q ss_pred cCCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCC--CceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCC
Q 016134 121 DESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGE--GLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDG 196 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~--~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg 196 (394)
...||+..+-.++ |+|. +..+| +++.|+.||||+... .+.+...+ .+|+..|.+++|+|.|++|++||.|.
T Consensus 9 ~~~gh~~r~W~~a-whp~~g~ilA----scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 9 KLSGHKDRVWSVA-WHPGKGVILA----SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eecCCCCcEEEEE-eccCCceEEE----eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567887888898 9997 56555 455667999999874 34555555 47999999999999999999999999
Q ss_pred c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC---CceeE
Q 016134 197 T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT---LEPVM 269 (394)
Q Consensus 197 ~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~---~~~~~ 269 (394)
+ ||.-..++.. .++..+||..+|.|++|+ |++||+++.|++|-||.+.. .+++.
T Consensus 84 t~~Iw~k~~~efe-------------------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a 144 (312)
T KOG0645|consen 84 TVVIWKKEDGEFE-------------------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA 144 (312)
T ss_pred eEEEeecCCCcee-------------------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence 9 6876544322 233556999999999997 89999999999999999864 45788
Q ss_pred EEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCC---CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134 270 TLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATG---RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTV 344 (394)
Q Consensus 270 ~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I 344 (394)
.|+.|+..|..+.|++ .+|++++.|++|++|+-.. ..+++++..|.. ..++..|++.|. .|+++++|++|
T Consensus 145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~-rl~s~sdD~tv 219 (312)
T KOG0645|consen 145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN----TVWSLAFDNIGS-RLVSCSDDGTV 219 (312)
T ss_pred eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc----eEEEEEecCCCc-eEEEecCCcce
Confidence 8999999999999994 8999999999999998662 345666666653 334446899998 89999999999
Q ss_pred EEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 345 HLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
+||.+... ....+...+..++|. ++.|++++.|+.|++|.-...
T Consensus 220 ~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 220 SIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred EeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCC
Confidence 99986632 122335679999999 779999999999999987654
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=221.11 Aligned_cols=231 Identities=20% Similarity=0.306 Sum_probs=199.2
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA 205 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~ 205 (394)
.|..|. |.|.|+-|.+++.+| -+.+|+. +.+.....++.|..+|.++.|++++.+++||+.+|. +|+..-..
T Consensus 98 ~V~~v~-WtPeGRRLltgs~SG----EFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 98 PVNVVR-WTPEGRRLLTGSQSG----EFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ceeeEE-EcCCCceeEeecccc----cEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 566677 999999999999999 7999997 344666778899999999999999999999999999 49876554
Q ss_pred EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 283 (394)
...+.. .|...|.+++|+ ...|+++|.|++|+|||....+....+.+|.-.|.+++|
T Consensus 172 Vk~~~a---------------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 172 VKIIQA---------------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred hHHhhH---------------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 433222 344778888887 578999999999999999998888889999999999999
Q ss_pred c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-c
Q 016134 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-S 360 (394)
Q Consensus 284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~ 360 (394)
+ ..+|++++.|..|++||.+++.++.++..|+. .++.+ .|++++. +|++++.|..+++||+++.+++..+. +
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~--~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAV--KFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEE--EEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcc
Confidence 9 67999999999999999999999999888774 34433 4799996 99999999999999999888887777 4
Q ss_pred CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 361 KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 361 ~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
+..|+++.|+|-. +|.+|+.||.|..|.+.
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhhheeeccccccccceeeccCCCceEEEecc
Confidence 7889999999976 99999999999999987
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.2e-27 Score=228.25 Aligned_cols=253 Identities=18% Similarity=0.354 Sum_probs=218.4
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA 205 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~ 205 (394)
.|+.++ |.|...|+.++..+| .|++||...+ .++..|..|.++|..++|+|+..+++||+.|-. ||+..+.+
T Consensus 11 RvKgls-FHP~rPwILtslHsG----~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLS-FHPKRPWILTSLHSG----VIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred ccccee-cCCCCCEEEEeecCc----eeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 577788 999999999999999 9999999888 889999999999999999999999999999998 69999999
Q ss_pred EE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeC
Q 016134 206 EF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWEL 262 (394)
Q Consensus 206 ~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~ 262 (394)
++ ++.+|...|..+.|++. .+++++.| ||...|.|..|+ .++++++|.|.+|||||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 87 88999999999999998 88888887 899999999998 578999999999999998
Q ss_pred CC--------C-------------------c--eeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCce--ee
Q 016134 263 DT--------L-------------------E--PVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGN--LE 309 (394)
Q Consensus 263 ~~--------~-------------------~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~--~~ 309 (394)
.. + . ..+.+++|...|..++|++ .+|++|+.|+.|++|.+...+. +.
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 52 1 0 1245688999999999996 8999999999999999876543 33
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
+..+|...+..+ .|+|... ++++.++|++|+|||+.....+.++.. .+.-+.++.+|...|+.++.|+-+.||.
T Consensus 245 tcrgH~nnVssv----lfhp~q~-lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 245 TCRGHYNNVSSV----LFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred hhhcccCCcceE----EecCccc-eeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence 445555444433 3688877 999999999999999999999888876 6679999999999666667788888998
Q ss_pred CCC
Q 016134 389 LLA 391 (394)
Q Consensus 389 ~~~ 391 (394)
++-
T Consensus 320 leR 322 (1202)
T KOG0292|consen 320 LER 322 (1202)
T ss_pred Ecc
Confidence 873
No 45
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.3e-27 Score=229.56 Aligned_cols=252 Identities=32% Similarity=0.431 Sum_probs=215.9
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134 84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG 163 (394)
Q Consensus 84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~ 163 (394)
...+++++.|+++++|+..++..... ...||...|..+. +...+..+. +|+.|.+++|||..++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~-----------~l~GH~g~V~~l~-~~~~~~~lv----sgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT-----------RLVGHFGGVWGLA-FPSGGDKLV----SGSTDKTERVWDCSTG 281 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe-----------eccCCCCCceeEE-EecCCCEEE----EEecCCcEEeEecCCC
Confidence 45778999999999999998886541 3789999999998 554555554 5566669999999888
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecC-CCCcEEEEEEcCCEEEEEecC--------
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDG-PVGEVYSMVVANEMLFAGAQD-------- 232 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~-~~~~v~~l~~~~~~l~~~~~~-------- 232 (394)
++..++.+|+..|.++... ..++++|+.|.+ +|+++++..+.+.. |.++|.++....+.+++|+.|
T Consensus 282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEh
Confidence 9999999999999999874 467888999999 69999999996655 999999999998899999988
Q ss_pred ----------CCCCCEEEEEecC-CeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEE
Q 016134 233 ----------GHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW 300 (394)
Q Consensus 233 ----------~h~~~V~~l~~~~-~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vw 300 (394)
+|...|.++.+++ +.+++|+.|++|++||+++. +|+.++.+|...+..+.+.+++|++++.|++|++|
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLW 438 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEe
Confidence 8999999999998 99999999999999999999 99999999999999999999999999999999999
Q ss_pred EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 360 (394)
|..++++++.+... +...+..+. .. +..+++++.|+++++||++++.....+..
T Consensus 439 D~~~~~~~~~~~~~-~~~~v~~l~----~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 439 DAEEGECLRTLEGR-HVGGVSALA----LG-KEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred ecccCceeeeeccC-CcccEEEee----cC-cceEEEEecCCeeEEEecccCchhhhhhh
Confidence 99999999998874 212333332 11 23788899999999999999988776644
No 46
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=194.18 Aligned_cols=222 Identities=16% Similarity=0.284 Sum_probs=179.6
Q ss_pred ccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEE
Q 016134 141 WLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSM 219 (394)
Q Consensus 141 ~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l 219 (394)
+|+++++|- +||+|...++ .+.++++-..+.|+.|.+.|+++.||+++.-.. ++|+.++....+
T Consensus 12 iLvsA~YDh----TIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv---------- 76 (311)
T KOG0315|consen 12 ILVSAGYDH----TIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV---------- 76 (311)
T ss_pred EEEeccCcc----eeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCce----------
Confidence 345555554 9999999999 899999988899999999999999999998877 899988765211
Q ss_pred EEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 220 VVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 220 ~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
.+.++|++.|+++.|. +..+++|++||+++|||++...+.+.++ |..+|+++..+ ...|++|..+|
T Consensus 77 ---------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 77 ---------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ---------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 1455888999999996 8899999999999999999977777665 77999999998 45899999999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee------EEEec-CCcEEEEE
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER------GRIFS-KHEVRVIE 368 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------~~~~~-~~~v~~l~ 368 (394)
.|++||+.+..+...+..... ..+..+. ..|||+ +|+.+...|..++|++-..... .++.. ...+..+.
T Consensus 147 ~irvWDl~~~~c~~~liPe~~-~~i~sl~--v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDD-TSIQSLT--VMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred cEEEEEccCCccccccCCCCC-cceeeEE--EcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 999999998766555443222 3333332 489999 8999999999999998765322 22322 55689999
Q ss_pred ECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 369 IGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 369 ~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
++||+ +|++++.|.+++||+++.
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCC
Confidence 99999 999999999999999764
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.6e-26 Score=216.79 Aligned_cols=291 Identities=23% Similarity=0.295 Sum_probs=228.0
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
+...++-|=+|..|+||+.++....- ...||+.+|+.+. +.-.|..+++++.| +.|.+||+-.
T Consensus 76 d~l~lAVGYaDGsVqif~~~s~~~~~------------tfngHK~AVt~l~-fd~~G~rlaSGskD----t~IIvwDlV~ 138 (888)
T KOG0306|consen 76 DILLLAVGYADGSVQIFSLESEEILI------------TFNGHKAAVTTLK-FDKIGTRLASGSKD----TDIIVWDLVG 138 (888)
T ss_pred CcceEEEEecCceEEeeccCCCceee------------eecccccceEEEE-EcccCceEeecCCC----ccEEEEEecc
Confidence 55567888999999999999764321 4679999999998 77777777655554 4899999966
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC-------
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD------- 232 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~------- 232 (394)
. .-+..++||++.|+..-|..+.++|++.+.|.. +||+++..+. ....|.++++.+++.++.++++..+
T Consensus 139 E-~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 139 E-EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred c-eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 5 668899999999999999998999999999999 5999999998 6678999999999998866666544
Q ss_pred --------------------------------------------------------------------------------
Q 016134 233 -------------------------------------------------------------------------------- 232 (394)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (394)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred -------------------------------------------------------------------------CCCCCEE
Q 016134 233 -------------------------------------------------------------------------GHTRPVT 239 (394)
Q Consensus 233 -------------------------------------------------------------------------~h~~~V~ 239 (394)
+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 7999999
Q ss_pred EEEecC-CeEEEEeCCCeEEEEeCCCCceeEEE----------------------------------------cCCCCCc
Q 016134 240 CLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTL----------------------------------------NDHTDAP 278 (394)
Q Consensus 240 ~l~~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~----------------------------------------~~h~~~v 278 (394)
+++++. +.++..+..+.++||+..+.+|++++ ++|.+.|
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 999984 33333344678999999876665542 4577888
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEeCCC-----ceeeEeeccc---CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134 279 MSLLCW--DQFLLSCSLDHTIKVWFATGR-----GNLEAAYTHK---EDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348 (394)
Q Consensus 279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-----~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd 348 (394)
++++.. +..+++++.|.+|++||..-- ...+.+.-+. -...-..+++.++||++ +|+++-.|++|+||-
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYF 536 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEE
Confidence 888877 778999999999999996421 1111011110 01122234556899999 999999999999999
Q ss_pred CCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 349 LPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 349 ~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+.+.+....+.+ .-+|.|+.++||+ +++|||.|..|+||-++-.
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 999887777665 6789999999999 9999999999999987653
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=197.09 Aligned_cols=259 Identities=18% Similarity=0.206 Sum_probs=205.2
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A 198 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v 198 (394)
-.+||.+.++.+. ++-.+.+|.+..-+ .++.||-..++ +.+-++.||++.|+++..+.+.++|+||+.|.+ +
T Consensus 5 ~l~GHERplTqiK-yN~eGDLlFscaKD----~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 5 LLQGHERPLTQIK-YNREGDLLFSCAKD----STPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ccccCccccceEE-ecCCCcEEEEecCC----CCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 4679999999999 99999998866544 49999998888 889999999999999999999999999999997 7
Q ss_pred eecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecC-------------------------------CCCCCEEEEEec--
Q 016134 199 WNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQD-------------------------------GHTRPVTCLAVG-- 244 (394)
Q Consensus 199 Wd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~~~V~~l~~~-- 244 (394)
||+++|+++.......+|..+.|+.+ .++..+.| .+.+.++.+-|.
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 99999999988888889999999987 44433333 455778888887
Q ss_pred CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
++.|++|..||.|.+||+++++ .+...+.|...|+.++++ ..++++++.|.+-++||.++-+.++++... .+....
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~a 237 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTA 237 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccce
Confidence 7899999999999999999975 455667899999999999 679999999999999999988777776543 334444
Q ss_pred EEEeeECCCCCcEEEEEeCCCe-EEEEECCCC------------ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 322 ALGGLNDPDGKPVLICACNDNT-VHLYELPSF------------MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~------------~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
++ +|....+++.|+.+-. |.-=+.+.+ +++..+.. =++|++++|+|+| ..++|++||.|++
T Consensus 238 ai----sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 238 AI----SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ec----ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 44 7776645555554321 111112222 22333332 4589999999999 9999999999998
Q ss_pred EeCC
Q 016134 387 WKLL 390 (394)
Q Consensus 387 Wd~~ 390 (394)
.-++
T Consensus 314 h~Fd 317 (327)
T KOG0643|consen 314 HHFD 317 (327)
T ss_pred EEec
Confidence 7654
No 49
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.6e-26 Score=217.02 Aligned_cols=260 Identities=21% Similarity=0.264 Sum_probs=207.9
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceee-eccccccccccCCCeecCCCCCeEEEEEcC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKK-TTLKNVCCHWLLGNCVRGDECRFLHSWFCG 161 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~-~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~ 161 (394)
+..+|+++|.|+++++|.-....+.++. ...|+...+.. +. +-++..| ....|+.|.+|.+|...
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~----------~~~~~~g~i~~~i~-y~e~~~~---~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETH----------AFEGPKGFIANSIC-YAESDKG---RLVVGGMDTTIIVFKLS 89 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccce----------ecccCcceeeccce-eccccCc---ceEeecccceEEEEecC
Confidence 6778899999999999999877776644 35555544443 33 2223333 13446667799999998
Q ss_pred CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT 239 (394)
Q Consensus 162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~ 239 (394)
+. .++.+|++|+..|.+++...++. |+|||.|.+ ||-...... ...+|+..|+
T Consensus 90 ~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----------------------~l~gH~asVW 144 (745)
T KOG0301|consen 90 QA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----------------------SLQGHTASVW 144 (745)
T ss_pred CC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-----------------------ccCCcchhee
Confidence 76 89999999999999999887777 999999999 687654332 2338889999
Q ss_pred EEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134 240 CLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 240 ~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
+++.- .+.++|||.|++|++|.- ++++++|.+|++.|..+++- +..|++|+.||.|++|++ +++.+..+.+|...
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF 221 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceE
Confidence 88764 678999999999999975 78899999999999999998 559999999999999999 67888888887754
Q ss_pred cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
...+.. ..++. +++++++|++++||+.. ++.+.+.+.. .|+++.+-++|-|++|+.||.|+||....
T Consensus 222 vYsis~----~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 222 VYSISM----ALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEEe----cCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 444442 44555 89999999999999987 6667776644 79999999999999999999999998653
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.4e-27 Score=203.26 Aligned_cols=258 Identities=21% Similarity=0.346 Sum_probs=213.4
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEE--------EecccCCCeEEEEecCCCCEEEEEe
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLA--------KLEGHEKAVSGIALPLRSDKLFSGS 193 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~--------~l~~h~~~V~~l~~s~~~~~l~sgs 193 (394)
..|.+..+.+.. |+|+++|+++++.+| +|.+|+..++ ++.. .+.-|..+|.|+.|+.|...|++|+
T Consensus 209 KFg~KSh~EcA~-FSPDgqyLvsgSvDG----FiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 209 KFGQKSHVECAR-FSPDGQYLVSGSVDG----FIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred ecccccchhhee-eCCCCceEeeccccc----eeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 346666677776 999999999887777 9999999877 3333 2334789999999999999999999
Q ss_pred CCCc--eeecCCCcEEE-ec-CCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCe
Q 016134 194 RDGT--AWNIESSAEFS-LD-GPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSR 247 (394)
Q Consensus 194 ~Dg~--vWd~~~~~~~~-~~-~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~ 247 (394)
.||. ||.+++|.+++ +. .|...|.++.|+.| .+++++.| +|+..|+...|. |..
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence 9999 69999999984 43 68899999999988 78888877 899999999996 889
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 322 (394)
+++++.||+|+||+.++.+|+.+|+. ...+|.++... ...++.|...++|.+-++. ++.++.+...+......
T Consensus 363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF- 440 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF- 440 (508)
T ss_pred EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce-
Confidence 99999999999999999999999875 34567777665 5689999999999999985 56666665544333322
Q ss_pred EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
++.+.+|.|. ++.+.++|+.++.|.+.++.+...+.- +..|..++-+|.. +|++-++||.+++|.
T Consensus 441 i~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 2334699999 999999999999999999988877765 6678999999988 999999999999995
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=197.92 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=212.3
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A 198 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v 198 (394)
....|+..+.+++ .+|...|++++ +.|-.-.+|+..++ ....++.+|+..|+++.|+.+|.+||||+.+|. |
T Consensus 59 tF~~H~~svFavs-l~P~~~l~aTG----GgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 59 TFDKHTDSVFAVS-LHPNNNLVATG----GGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ehhhcCCceEEEE-eCCCCceEEec----CCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 3557777888888 88877777755 44448999999998 688999999999999999999999999999999 6
Q ss_pred eecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCC
Q 016134 199 WNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDN 255 (394)
Q Consensus 199 Wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg 255 (394)
|+..++... .+......+.-|.|+|. .+++|+.| +|..++++=.|. |++++++..||
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999998876 45556677888889987 77777777 788888888885 78999999999
Q ss_pred eEEEEeCCCCceeEEEcC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec--------ccCCcceEEEE
Q 016134 256 TIRVWELDTLEPVMTLND-HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT--------HKEDNGVLALG 324 (394)
Q Consensus 256 ~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~ 324 (394)
+|++||+++++++..+.. ......++.+. +..++.|+.++.+++-+..+++.+..... +......+..
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~- 291 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES- 291 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh-
Confidence 999999999999888863 23345566665 77888899999988888777776655542 1111222211
Q ss_pred eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
..++..-. +.|+|+.||+|.|||+..........++..|+.+.|.++.+|++++.||.|++||..+.
T Consensus 292 ~~~ss~lp-L~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLP-LAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccc-hhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc
Confidence 11233334 89999999999999999999998999999999999999559999999999999998875
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.4e-25 Score=195.62 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=226.9
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
.+.+.+||++|...+||+..++.+.. ...||+-+|+++. |+-++.|||++..+| .|+||+..+
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~------------eltgHKDSVt~~~-FshdgtlLATGdmsG----~v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAG------------ELTGHKDSVTCCS-FSHDGTLLATGDMSG----KVLVFKVST 137 (399)
T ss_pred CCceEEecCCCceEEEEEccCCccee------------EecCCCCceEEEE-EccCceEEEecCCCc----cEEEEEccc
Confidence 45577999999999999999998643 5678999999999 999999999888887 999999988
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCC-CcEEEecCCCCcEEEEEEcCC--EEEEEecCC----
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVANE--MLFAGAQDG---- 233 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~---- 233 (394)
+ .....+..--..|.=|.|+|.+..|+.|+.||.+ |.+.+ +.+..+.+|..++.+=.|.|+ .++++..++
T Consensus 138 g-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 138 G-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred C-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 8 4445555566788889999999999999999996 66766 445578899999999999998 888887771
Q ss_pred ------C---------CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc--------CCCCCcEEEEEc----
Q 016134 234 ------H---------TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN--------DHTDAPMSLLCW---- 284 (394)
Q Consensus 234 ------h---------~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--------~h~~~v~~l~~~---- 284 (394)
+ ..+..++.++ +..++.|+.++.+++-+..+++.+..+. .+...+.++.+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 1 1234455554 6789999999999999999988877665 344445555544
Q ss_pred -CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CC
Q 016134 285 -DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KH 362 (394)
Q Consensus 285 -~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~ 362 (394)
=.+.|+|+.||+|.|||+...+. +....|... ++.+ .|.+ .. +|++++.+|.|++||.++++++..+.+ ..
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~--V~~l--~w~~-t~-~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTL-RHICEHEDG--VTKL--KWLN-TD-YLLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred ccchhhcccccceEEEEecccchh-heeccCCCc--eEEE--EEcC-cc-hheeeccCceEEeeeccccceEEEEecCch
Confidence 25788999999999999976543 444445544 3333 3455 33 899999999999999999999998876 66
Q ss_pred cEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.|.+++++|+. +++|+|.|++.+||++.
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 79999999999 99999999999999875
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=194.05 Aligned_cols=222 Identities=22% Similarity=0.366 Sum_probs=189.0
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc-E-EEecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA-E-FSLDGPVGEVYSMVVANE--MLFAGAQD------ 232 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~-~-~~~~~~~~~v~~l~~~~~--~l~~~~~~------ 232 (394)
.++..+.+|++.|+.+.|+|+|.+|+||+.|.. +|+..... . ..+.+|.+.|..+.|..+ .+++++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 567788999999999999999999999999999 59854332 2 367899999999999988 77777776
Q ss_pred ------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 233 ------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 233 ------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
+|..-|+++... ..++.+++.|++++|||+++.+++++++ ....++++.|. +..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 788888888764 5679999999999999999999998886 45788999998 78899999999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc----eeEEEec-----CCcEEE
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM----ERGRIFS-----KHEVRV 366 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~-----~~~v~~ 366 (394)
.|++||++.......+.+|...+..+.+ +++|. ++.+-+.|.++++||++... ++..+.. +.....
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsl----s~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSL----SRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEe----ccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999999999999999999987777766 89999 89999999999999998653 2333332 345677
Q ss_pred EEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 367 IEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 367 l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++|+|++ .+..|+.|..+.+||....
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeccCCCCccccccccceEEEeecccc
Confidence 8999999 9999999999999998763
No 54
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.7e-24 Score=210.07 Aligned_cols=207 Identities=19% Similarity=0.288 Sum_probs=160.0
Q ss_pred EecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134 169 KLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG- 244 (394)
Q Consensus 169 ~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~- 244 (394)
.+.+|.+.|++++|+| ++++|++|+.|++ |||+.++..... ....+ ....+|...|.+++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~~~l------------~~L~gH~~~V~~l~f~P 135 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--ISDPI------------VHLQGHTKKVGIVSFHP 135 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cCcce------------EEecCCCCcEEEEEeCc
Confidence 5789999999999999 8899999999999 699976532110 00011 1233789999999997
Q ss_pred --CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce
Q 016134 245 --RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV 320 (394)
Q Consensus 245 --~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 320 (394)
+++|++++.|++|+|||+++++.+..+..|...|.+++|+ +.+|++++.|++|++||+++++.+..+..|......
T Consensus 136 ~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ 215 (493)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce
Confidence 3589999999999999999999999999999999999998 789999999999999999998887777666543222
Q ss_pred EEEEeeECCCCCcEEEEE---eCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEe-CCCeEEEEeCCCC
Q 016134 321 LALGGLNDPDGKPVLICA---CNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGD-GAGMLGVWKLLAK 392 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sg---s~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~~~ 392 (394)
. ..|.+++..++.+| +.|+.|++||+++......... ...+....|++++ +|++++ .|+.|++||+..+
T Consensus 216 ~---~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 216 R---CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred E---EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 2 23577776344444 3479999999997654333222 3346667899998 777776 6999999999764
No 55
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.8e-24 Score=210.25 Aligned_cols=228 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM 225 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~ 225 (394)
|+..+.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|+||+.|++ |||+.++..... ....++
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p~--------- 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDPQ--------- 118 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccce---------
Confidence 556669999998765 678899999999999999996 789999999999 699986532100 000001
Q ss_pred EEEEecCCCCCCEEEEEecC--C-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 226 LFAGAQDGHTRPVTCLAVGR--S-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 226 l~~~~~~~h~~~V~~l~~~~--~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
....+|...|.+++|++ . +|++++.|++|+|||+++++.+..+. |...|.+++|+ +.+|++++.|+.|+||
T Consensus 119 ---~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 119 ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHII 194 (568)
T ss_pred ---EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence 12237889999999983 3 56899999999999999998887776 66789999998 8899999999999999
Q ss_pred EeCCCceeeEeecccCCcceEEE-EeeECCCCCcEEEEEeCC----CeEEEEECCC-CceeEEEecCC---cEEEEEECC
Q 016134 301 FATGRGNLEAAYTHKEDNGVLAL-GGLNDPDGKPVLICACND----NTVHLYELPS-FMERGRIFSKH---EVRVIEIGP 371 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~l~sgs~d----g~I~iwd~~~-~~~~~~~~~~~---~v~~l~~sp 371 (394)
|+++++.+..+..|........+ ...|++++. +|++++.| ++|+|||++. ...+..+.... .+......+
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 99999888888777654333322 223568888 67776655 4799999996 44554444322 233333344
Q ss_pred CC-EEEEEeCCCeEEEEeCCCC
Q 016134 372 DK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 372 ~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++ ++++|+.|+.|++|++..+
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCC
Confidence 56 8999999999999998653
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.1e-26 Score=212.60 Aligned_cols=223 Identities=18% Similarity=0.302 Sum_probs=197.5
Q ss_pred EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC--------
Q 016134 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------- 232 (394)
Q Consensus 166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------- 232 (394)
..+.+..|+..|.++.|+|....++++=..|. ||+.++...+ .+.-.+.+|.+..|-.. .+++|+.|
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34566779999999999999999999999998 7999998887 55666778888888665 88888877
Q ss_pred ----------CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCc
Q 016134 233 ----------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHT 296 (394)
Q Consensus 233 ----------~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~ 296 (394)
.|.+.|.+|+.++ .+++++|.|-+|++||.+. ..+.++|++|.-.|++++|. .+.+++++.|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 7999999999995 5799999999999999975 57899999999999999999 579999999999
Q ss_pred EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-E
Q 016134 297 IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-L 374 (394)
Q Consensus 297 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~ 374 (394)
|+||.+....+..++.+|...+.++.+ +....+++|++|++|.+|+|||.++..++.++.+ .+.|..+.|+|.- .
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdy---y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDY---YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEe---ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 999999999999999999877776665 4555567999999999999999999999999985 7889999999998 9
Q ss_pred EEEEeCCCeEEEEeCCC
Q 016134 375 FFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 375 l~tgs~Dg~I~vWd~~~ 391 (394)
|++|++||+|+||+-.+
T Consensus 242 iisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEecCCccEEEecCcc
Confidence 99999999999998654
No 57
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2e-24 Score=211.06 Aligned_cols=262 Identities=15% Similarity=0.134 Sum_probs=188.4
Q ss_pred cccccccCCCCCcccccccCCCCCC-CCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEc
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYT-GPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFC 160 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~-~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~ 160 (394)
+.+.+++++.+..+..|+...+... .+.+.-.......-..||...|..+. |+| ++.++++++.++ +|++||+
T Consensus 31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~-fsP~d~~~LaSgS~Dg----tIkIWdi 105 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVA-FNPFDPQKLFTASEDG----TIMGWGI 105 (493)
T ss_pred CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEE-EcCCCCCEEEEEeCCC----EEEEEec
Confidence 4456677888888888876654321 11110000111224569999999999 999 777888776666 9999999
Q ss_pred CCCc------eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134 161 GEGL------TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231 (394)
Q Consensus 161 ~~~~------~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 231 (394)
.++. .++..+.+|...|.+++|+|++ ++|++++.|++ |||+++++... ..
T Consensus 106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---------------------~l 164 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---------------------VI 164 (493)
T ss_pred CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---------------------EE
Confidence 6542 4678899999999999999975 79999999998 69999886542 11
Q ss_pred CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcE-EEEEc--CCEEEEEe----CCCcEEEEEe
Q 016134 232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM-SLLCW--DQFLLSCS----LDHTIKVWFA 302 (394)
Q Consensus 232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~--~~~l~s~s----~Dg~i~vwd~ 302 (394)
.+|...|.+++|+ +.+|++++.|++|+|||+++++.+.++.+|.+.+. .+.|. +..|++++ .|+.|++||+
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 2577788888886 67899999999999999999999999999987543 45555 45666654 4799999999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK 373 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~ 373 (394)
++.............. ......|++++. +|++++ .|+.|++||+.+++....... ...+..++|.|..
T Consensus 245 r~~~~p~~~~~~d~~~--~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 245 RKMASPYSTVDLDQSS--ALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCceeEeccCCCC--ceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 8755333322222111 222334789998 666665 599999999999877655433 4567888888864
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=8.9e-25 Score=185.86 Aligned_cols=260 Identities=15% Similarity=0.160 Sum_probs=217.0
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT-- 197 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~-- 197 (394)
.++|...+.+|+ |+.++..++++++++ ++.+|+++.. ...-....+|.+.|-.++|+| ..++|++++.|.+
T Consensus 16 ~~~~~~~v~Sv~-wn~~g~~lasgs~dk----tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 16 LQGHVQKVHSVA-WNCDGTKLASGSFDK----TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhhhcceEEE-EcccCceeeecccCC----ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 567778899999 999999999887777 9999999755 223345578999999999987 5689999999998
Q ss_pred eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCe
Q 016134 198 AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNT 256 (394)
Q Consensus 198 vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~ 256 (394)
+||+..+++.......++-.-+.|+|+ .++++..+ ...-.+..+.|+ +++++.....|+
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 699999998865555555566778777 66666655 334567777886 677777777799
Q ss_pred EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134 257 IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 257 V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 334 (394)
|.|......++++++++|.....|+.|+ |++||+|+.|-.+.+||+..--+++.+..+.-++..++ |+.+|+ +
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS----FS~dg~-~ 245 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS----FSHDGR-M 245 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE----eccCcc-e
Confidence 9999999999999999999999999999 89999999999999999998888888887776666555 488999 9
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCC---------CeEEEEeCCC
Q 016134 335 LICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGA---------GMLGVWKLLA 391 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~D---------g~I~vWd~~~ 391 (394)
||++++|..|-|=++++|..+..+....+...++|+|.. +||.++.| |.|++|-+.+
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999999999999999999999999999999999 77777654 6788876653
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=195.08 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=207.2
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc-----
Q 016134 86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC----- 160 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~----- 160 (394)
-+.++|+|.|.+||.+|++.+.. ...||...|.++. |++.+.++++++-++ +-+||..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~------------~Y~GH~GSVNsik-fh~s~~L~lTaSGD~----taHIW~~av~~~ 224 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLA------------TYTGHTGSVNSIK-FHNSGLLLLTASGDE----TAHIWKAAVNWE 224 (481)
T ss_pred ceeecccccceeEEeecccccee------------eecccccceeeEE-eccccceEEEccCCc----chHHHHHhhcCc
Confidence 45689999999999999999753 4678999999999 999999888776655 8888871
Q ss_pred -CC------------------------------C---ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134 161 -GE------------------------------G---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204 (394)
Q Consensus 161 -~~------------------------------~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~ 204 (394)
.. + ..++..|.+|...|.+..|-..++.+++++.|.+ +||++++
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 11 0 1357788999999999999999999999999999 8999999
Q ss_pred cEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEE
Q 016134 205 AEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMS 280 (394)
Q Consensus 205 ~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~ 280 (394)
+.+. +. +|..+.+-++-+ ..++++.+.|-+.++||++. -..+..|++|+..|++
T Consensus 305 e~v~~Lt----------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 305 EVVNILT----------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred ceecccc----------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9873 33 555555555544 46788999999999999985 3457788999999999
Q ss_pred EEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134 281 LLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF 359 (394)
Q Consensus 281 l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 359 (394)
+.|. +..+++++.|.+|++||+++............+...+++ +..+. +|+.--++..|++||+.... +..++
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvav----s~g~~-iIAiPhDNRqvRlfDlnG~R-laRlP 436 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAV----SKGHP-IIAIPHDNRQVRLFDLNGNR-LARLP 436 (481)
T ss_pred EEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEe----ecCCc-eEEeccCCceEEEEecCCCc-cccCC
Confidence 9999 899999999999999999976543333333444455554 33444 88888888999999997543 33333
Q ss_pred ------cCCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCCC
Q 016134 360 ------SKHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 360 ------~~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~~ 393 (394)
+..-|+|++|..+. .|++++.|..+.-|++....
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 23459999999876 89999999999999998653
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-26 Score=192.57 Aligned_cols=231 Identities=16% Similarity=0.163 Sum_probs=180.4
Q ss_pred ceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCC
Q 016134 128 TSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIES 203 (394)
Q Consensus 128 ~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~ 203 (394)
.+-.|+ |++. ...+.+++-|| ++++||......+++.++.|+.+|.++.|++ +.+.++++|.|++ +|+...
T Consensus 62 ~LfdV~-Wse~~e~~~~~a~GDG----SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 62 GLFDVA-WSENHENQVIAASGDG----SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ceeEee-ecCCCcceEEEEecCc----eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 344455 6663 33344445454 9999999877789999999999999999998 5677888899999 699887
Q ss_pred CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280 (394)
Q Consensus 204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~ 280 (394)
.+.+. +..+|...|...+|+ +++++++|.|+++++||++.......++.|...|.+
T Consensus 137 ~~Sv~---------------------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 137 PNSVQ---------------------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred CcceE---------------------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 77653 233677777777776 789999999999999999875544558999999999
Q ss_pred EEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134 281 LLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG 356 (394)
Q Consensus 281 l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~ 356 (394)
+.|+ ...|+|++.|+.|++||+++-+ ++..+..|.-.+.. +.|+|....+|++++.|-+++|||...+....
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk----vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK----VKFSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE----EecCcchhhHhhhccccceEEecccccchhhh
Confidence 9998 6799999999999999998754 44555555433332 34688877799999999999999998654333
Q ss_pred -EEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134 357 -RIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWK 388 (394)
Q Consensus 357 -~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd 388 (394)
+..+ ..-|..+.|++-. ++|+++.|+.+.||+
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeec
Confidence 3333 4448899999865 999999999999998
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=195.57 Aligned_cols=265 Identities=17% Similarity=0.223 Sum_probs=211.8
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134 84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG 163 (394)
Q Consensus 84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~ 163 (394)
+..+.+|+.|+++-+.|...+..-. ...||.+.|..+. +++....+++++.+- .|+||.....
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~------------~~~Gh~kki~~v~-~~~~~~~v~~aSad~----~i~vws~~~~ 293 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILA------------TLKGHTKKITSVK-FHKDLDTVITASADE----IIRVWSVPLS 293 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhh------------hccCcceEEEEEE-eccchhheeecCCcc----eEEeeccccc
Confidence 4678999999999999998777543 6789999999999 999888877776665 9999999776
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL 241 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l 241 (394)
........|..+|+.+..+|.|+||++++.|++ .-|++++..+....+. ...-.+++.
T Consensus 294 -s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-------------------~s~v~~ts~ 353 (506)
T KOG0289|consen 294 -SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-------------------TSDVEYTSA 353 (506)
T ss_pred -cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-------------------cccceeEEe
Confidence 456777899999999999999999999999999 4788888876432221 122346666
Q ss_pred Eec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134 242 AVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 242 ~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
+|+ +.+|.+|..|+.|+|||+.+...+..|.+|+++|.++.|+ |.+|++++.|+.|++||+|..+...++......
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK 433 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc
Confidence 776 5678899999999999999999999999999999999999 789999999999999999998877766654332
Q ss_pred cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC--CCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELP--SFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
.+.++ .|++.|. +|+.++.|=+|++++-. ++.++..+.. .+..+++.|.... ++++++.|..++++.+
T Consensus 434 -~v~s~--~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 434 -EVNSL--SFDQSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -cceeE--EEcCCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 33333 4688999 78778777666666633 3444444443 4468889998887 9999999999999865
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.7e-25 Score=185.93 Aligned_cols=233 Identities=16% Similarity=0.201 Sum_probs=180.1
Q ss_pred ccc---cccccCCCeecC-CCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCc
Q 016134 135 KNV---CCHWLLGNCVRG-DECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSA 205 (394)
Q Consensus 135 ~~~---~~~~~~~~~~~g-~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~ 205 (394)
|+| ....+|++...| ..+|.+.|.++..+ ....+.+ .-.+.+.+++|+++ .+.+++++.||. |||+....
T Consensus 16 fSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s 94 (311)
T KOG0277|consen 16 FSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS 94 (311)
T ss_pred ecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC
Confidence 555 233356665555 56789999999533 2333333 24688999999985 578999999999 69954332
Q ss_pred EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEE
Q 016134 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282 (394)
Q Consensus 206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 282 (394)
.. +. ....|..+|.++.|+ ...++++|.|++|++||....+.++++.+|...|+...
T Consensus 95 ~P--------i~------------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 95 KP--------IH------------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cc--------hh------------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 21 11 233788889999987 46688889999999999999999999999999999999
Q ss_pred Ec---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eEEE
Q 016134 283 CW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RGRI 358 (394)
Q Consensus 283 ~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~~~ 358 (394)
|+ +++++++|.|+++++||++.......+..|.. .+++. .|+.-..++|+||+.|+.|++||+++.+. +..+
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~c--dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCC--DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEee--cccccCCcEEEecCCCceEEEEehhhccccceee
Confidence 98 78999999999999999998777666776663 33333 35665566999999999999999998754 3333
Q ss_pred ec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134 359 FS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 359 ~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
.. .-.|+.+.|+|.. +|++++.|-+++|||...+
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 32 4459999999987 9999999999999998754
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.4e-25 Score=213.29 Aligned_cols=243 Identities=15% Similarity=0.185 Sum_probs=191.5
Q ss_pred cccCC-CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC--------------------------------C--
Q 016134 119 VSDES-GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE--------------------------------G-- 163 (394)
Q Consensus 119 ~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~--------------------------------~-- 163 (394)
.++.. .|+++|-+.. |++||.|||+++-|+ .||||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mK-FS~DGKyLAsaGeD~----virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMK-FSHDGKYLASAGEDG----VIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeccccccCCcEEEEE-eCCCCceeeecCCCc----eEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 34555 8889999999 999999999888777 999998755 0
Q ss_pred -------------------------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcE
Q 016134 164 -------------------------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEV 216 (394)
Q Consensus 164 -------------------------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v 216 (394)
.++++.|.||.+.|.+|.|+. ..+|+|++.|.+ +|++...+++...
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F------ 406 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF------ 406 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE------
Confidence 235677789999999999986 469999999999 6999999998654
Q ss_pred EEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE
Q 016134 217 YSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC 291 (394)
Q Consensus 217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 291 (394)
.|...|+|++|+ .++|++|+-|++||||++...+.+.-.. -..-|++++|. |+..+.|
T Consensus 407 ----------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 407 ----------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ----------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEE
Confidence 567777888886 6899999999999999998766655444 44889999998 8999999
Q ss_pred eCCCcEEEEEeCCCceeeEeecccC------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CC
Q 016134 292 SLDHTIKVWFATGRGNLEAAYTHKE------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KH 362 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~ 362 (394)
+.+|.+++|+.+..+.......... ...+..+. |.|....-|++.+.|..|||||.++..++..+.+ ..
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q--~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ--FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE--ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 9999999999987665544433211 12344444 3433322455567899999999988888877775 34
Q ss_pred cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.-....|+.|| +|+++++|..|+||+++..
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 45667899999 9999999999999998654
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.1e-24 Score=201.89 Aligned_cols=237 Identities=23% Similarity=0.384 Sum_probs=198.9
Q ss_pred CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecC-CCCcEEEEEEcCCE
Q 016134 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDG-PVGEVYSMVVANEM 225 (394)
Q Consensus 150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~-~~~~v~~l~~~~~~ 225 (394)
..+..|++|+..++ .......-+...|+++.|+++|.+|+.|..+|. |||..+.+.+ .+.. |...|.+++|....
T Consensus 194 alg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~ 272 (484)
T KOG0305|consen 194 ALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSV 272 (484)
T ss_pred EecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCce
Confidence 34448999999887 444444445899999999999999999999999 6999888776 4555 89999999999888
Q ss_pred EEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134 226 LFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW 284 (394)
Q Consensus 226 l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 284 (394)
+.+|+.+ +|..+|..++|+ +.+||+|+.|+.+.|||....+++..+..|..+|.+++|+
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 8888776 799999999997 7899999999999999998889999999999999999998
Q ss_pred ---CCEEEEEe--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-EeCCCeEEEEECCCCceeEEE
Q 016134 285 ---DQFLLSCS--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-ACNDNTVHLYELPSFMERGRI 358 (394)
Q Consensus 285 ---~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-gs~dg~I~iwd~~~~~~~~~~ 358 (394)
..+||+|+ .|+.|++||..++..+..+.... .+. .+.|++..+.++.+ |..++.|.||+..+.+.+..+
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVc--sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l 427 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVC--SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL 427 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---cee--eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence 67899876 59999999999888777665432 233 33478888745554 455789999999998887777
Q ss_pred ec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 359 FS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 359 ~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.. ...|..++++||| .+++|+.|.++++|++-.+
T Consensus 428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 65 7789999999999 9999999999999998763
No 65
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.7e-24 Score=208.51 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=176.6
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCCc---
Q 016134 89 SGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEGL--- 164 (394)
Q Consensus 89 s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~~--- 164 (394)
+|+.+..+++|+....... ....||...|.++. |+|. ..++++++.++ +|+|||+.++.
T Consensus 49 gGG~~gvI~L~~~~r~~~v------------~~L~gH~~~V~~la-fsP~~~~lLASgS~Dg----tIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPV------------IKLKGHTSSILDLQ-FNPCFSEILASGSEDL----TIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCceE------------EEEcCCCCCEEEEE-EcCCCCCEEEEEeCCC----eEEEEECCCCCccc
Confidence 4555778888876643221 24678999999999 9996 67888776666 99999997532
Q ss_pred ----eEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCC
Q 016134 165 ----TMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRP 237 (394)
Q Consensus 165 ----~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~ 237 (394)
.++..+.+|...|.+++|+|++.. |++++.|++ |||+++++..... .|...
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----------------------~~~~~ 169 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----------------------NMPKK 169 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----------------------ecCCc
Confidence 245678899999999999998875 579999999 6999988754211 23456
Q ss_pred EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE-----c--CCEEEEEeCCC----cEEEEEeCC
Q 016134 238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC-----W--DQFLLSCSLDH----TIKVWFATG 304 (394)
Q Consensus 238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~-----~--~~~l~s~s~Dg----~i~vwd~~~ 304 (394)
|.+++|+ +.+|++++.|+.|+|||+++++.+.++.+|.+.+.+..+ . +.+|++++.|+ +|+|||++.
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 7788886 788999999999999999999999999999887654332 2 57888888774 799999996
Q ss_pred -CceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCce--eEEEecCCcEEEEEECCCC
Q 016134 305 -RGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFME--RGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~sp~~ 373 (394)
.+++..+ .+......+ ...+++ ++. ++++|+.|++|++|++..+.. +..+....++.+++|.|..
T Consensus 250 ~~~pl~~~-~ld~~~~~L--~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 250 TTSALVTM-SIDNASAPL--IPHYDESTGL-IYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCceEEE-EecCCccce--EEeeeCCCCC-EEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 4444433 232222222 112344 465 889999999999999987632 2222235678899999975
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=9.4e-24 Score=220.71 Aligned_cols=236 Identities=15% Similarity=0.182 Sum_probs=184.8
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-------eEEEEecccCCCeEEEEecC-CCCEEEEEe
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-------TMLAKLEGHEKAVSGIALPL-RSDKLFSGS 193 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-------~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs 193 (394)
..+|...|.+++ |++++.++++++.++ .|+||+..... .+...+. +...|.+++|++ ++.+|++++
T Consensus 479 ~~~~~~~V~~i~-fs~dg~~latgg~D~----~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 479 LLNSSNLVCAIG-FDRDGEFFATAGVNK----KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred ccCCCCcEEEEE-ECCCCCEEEEEeCCC----EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence 445778899999 999999998877666 99999975311 1233343 356899999987 578999999
Q ss_pred CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCcee
Q 016134 194 RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPV 268 (394)
Q Consensus 194 ~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~ 268 (394)
.|++ |||+.+++.+. ...+|...|++++|+ +.+|++|+.|++|++||+++++++
T Consensus 553 ~Dg~v~lWd~~~~~~~~---------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 553 FEGVVQVWDVARSQLVT---------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred CCCeEEEEECCCCeEEE---------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 9999 69999876553 122678888888886 468999999999999999999999
Q ss_pred EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134 269 MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTV 344 (394)
Q Consensus 269 ~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I 344 (394)
..+..+ ..|.++.|. +.+|++|+.|+.|++||+++.+ .+..+..|...+..+. |. ++. +|++++.|++|
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~----f~-~~~-~lvs~s~D~~i 684 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR----FV-DSS-TLVSSSTDNTL 684 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE----Ee-CCC-EEEEEECCCEE
Confidence 888754 678999885 7899999999999999998765 3445555554333332 34 556 89999999999
Q ss_pred EEEECCCC------ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 345 HLYELPSF------MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 345 ~iwd~~~~------~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+|||++.. ..+..+.. ...+..++|+|++ +|++|+.|+.|++|+...
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 99999753 34444443 5568999999999 999999999999999653
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.6e-23 Score=188.94 Aligned_cols=220 Identities=30% Similarity=0.487 Sum_probs=183.4
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC---------
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD--------- 232 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~--------- 232 (394)
++++++|.++|++++|+|++++|++++.|+. +|++.+++.. .+..+...+..+.|.++ .+++++.+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3567799999999999999999999999998 6999887654 56678888889999887 67777655
Q ss_pred ---------CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134 233 ---------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV 299 (394)
Q Consensus 233 ---------~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v 299 (394)
.|...|.++.|.+ .++++++.|+.|++||+++++.+..+..|...+.++.++ +.++++++.|+.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4677899999984 677777779999999999999999999999999999999 467777777999999
Q ss_pred EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEE
Q 016134 300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~t 377 (394)
||++..+.+..+..+......+ .++|+++ .|++++.|+.|++||++.++.+..+ .+...+.+++|+|++ ++++
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~----~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSV----AFSPDGE-KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred EEccccccceeEecCccccceE----EECCCcC-EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 9999877777776554433333 3589987 6777888999999999998887777 446689999999998 7888
Q ss_pred EeCCCeEEEEeCCC
Q 016134 378 GDGAGMLGVWKLLA 391 (394)
Q Consensus 378 gs~Dg~I~vWd~~~ 391 (394)
++.|+.|++|++.+
T Consensus 237 ~~~~~~i~i~~~~~ 250 (289)
T cd00200 237 GSEDGTIRVWDLRT 250 (289)
T ss_pred EcCCCcEEEEEcCC
Confidence 87799999999875
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-23 Score=171.60 Aligned_cols=256 Identities=17% Similarity=0.217 Sum_probs=200.2
Q ss_pred CccceeeeccccccccccCCCeecCCCCCeEEEEEcC------CC--------ceEEEEecccCCCeEEEEecCCCCEEE
Q 016134 125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG------EG--------LTMLAKLEGHEKAVSGIALPLRSDKLF 190 (394)
Q Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~------~~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~ 190 (394)
+..+|++|+ |.|.+.+-|.++.+. ++||-... .+ ....+.-+-|++.|.|.+|+|+|++|+
T Consensus 31 dsqairav~-fhp~g~lyavgsnsk----t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVA-FHPAGGLYAVGSNSK----TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEE-ecCCCceEEeccCCc----eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 345889999 999888877666555 77775332 11 122333456899999999999999999
Q ss_pred EEeCCCce----eecCCC----cEEEecCCCCcEEEEEEcCC------EEEEEecC-------------------CCCCC
Q 016134 191 SGSRDGTA----WNIESS----AEFSLDGPVGEVYSMVVANE------MLFAGAQD-------------------GHTRP 237 (394)
Q Consensus 191 sgs~Dg~v----Wd~~~~----~~~~~~~~~~~v~~l~~~~~------~l~~~~~~-------------------~h~~~ 237 (394)
+|+.|.+| ++.++. ..+.+.-|.+.|..++|-.+ .|++++.. +|++.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 99999994 555543 34577889999999999654 45544332 79999
Q ss_pred EEEE-EecCCeEEEEeCCCeEEEEeCCCCceeEEEcC--C-----CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134 238 VTCL-AVGRSRLCSGSMDNTIRVWELDTLEPVMTLND--H-----TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 238 V~~l-~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h-----~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
|.++ .|++-++++|+.|.+||.||++-..++.++.. | .+.|.+++.. |.+|+++-.|....+||++.++.
T Consensus 186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 9887 47899999999999999999999888887743 2 3568888877 89999999999999999999999
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC---cee--EEEecCCcEEEEEECCCC-EEEEEeCC
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF---MER--GRIFSKHEVRVIEIGPDK-LFFTGDGA 381 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~---~~~--~~~~~~~~v~~l~~sp~~-~l~tgs~D 381 (394)
++.+..|...+.++ .|+|... ++++++.|..|++-|++.. ++. ..-.++..+..+.|+|.. -+++.+.|
T Consensus 266 iq~f~phsadir~v----rfsp~a~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 266 IQRFHPHSADIRCV----RFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred eeeeCCCccceeEE----EeCCCce-EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 99988877655544 3588776 9999999999999998743 111 222346778889999999 89999999
Q ss_pred CeEEEEeCC
Q 016134 382 GMLGVWKLL 390 (394)
Q Consensus 382 g~I~vWd~~ 390 (394)
.++.+|-++
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999874
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=210.35 Aligned_cols=219 Identities=17% Similarity=0.275 Sum_probs=165.4
Q ss_pred eEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecC------------------------------
Q 016134 165 TMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDG------------------------------ 211 (394)
Q Consensus 165 ~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~------------------------------ 211 (394)
...+.+. +|+++|.++.|++||+|||+|+.|+. ||.+...+......
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4456666 89999999999999999999999999 69987622211000
Q ss_pred ----CCCcEEEEEEcCCEEEE------EecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134 212 ----PVGEVYSMVVANEMLFA------GAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280 (394)
Q Consensus 212 ----~~~~v~~l~~~~~~l~~------~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~ 280 (394)
......++.+ |...+. ..+.||.+.|.+|.|+ .++|+++|+|.+||+|++...+|+..|. |.+.|+|
T Consensus 337 s~~~~~~~s~~~~~-p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLL-PLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccC-CCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 0000001111 111111 1122999999999999 7899999999999999999999999997 9999999
Q ss_pred EEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE
Q 016134 281 LLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357 (394)
Q Consensus 281 l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~ 357 (394)
++|+ +++|++|+.|+.||||++...+.+. ......-++ +++|.|+|+ ..+.|+.+|.+++|+....+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lIT----Avcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLIT----AVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhhe----eEEeccCCc-eEEEEEeccEEEEEEccCCeEEEe
Confidence 9999 7899999999999999997654433 333332233 334699999 888899999999999998766544
Q ss_pred Eec---------CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 358 IFS---------KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 358 ~~~---------~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
..- .+.|+.+.|.|.. .|+..+.|..|+|+|+.+
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 321 2369999999876 688889999999999854
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.9e-25 Score=196.34 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=204.7
Q ss_pred CCCCCcccc--cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC
Q 016134 72 KKSPPSYNR--LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG 149 (394)
Q Consensus 72 ~~~~~~~~~--~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g 149 (394)
.....-|-. .+++.++||+|.|.|.-+|.+........++ ..-||...|..+. |+|+.+|+.+...+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~---------tlvgh~~~V~yi~-wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKK---------TLVGHSQPVSYIM-WSPDDRYLLACGFDE 291 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeee---------eeecccCceEEEE-ECCCCCeEEecCchH
Confidence 445566655 3377799999999999999988655432222 5678999999999 999999988766655
Q ss_pred CCCCeEEEEEcCCCceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC-CCCcEEEEEEcCC-
Q 016134 150 DECRFLHSWFCGEGLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG-PVGEVYSMVVANE- 224 (394)
Q Consensus 150 ~~~~~i~iWd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~-~~~~v~~l~~~~~- 224 (394)
.+.+||+.++ ...+.+ .+|...+.+++|.|||..+++|+.|+.+ ||++......-.+ ....|.+++..+|
T Consensus 292 ----~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 292 ----VLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred ----heeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 6999999988 444433 4567899999999999999999999994 9987765443222 2246888888887
Q ss_pred -EEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEE--E
Q 016134 225 -MLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL--L 282 (394)
Q Consensus 225 -~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l--~ 282 (394)
.+++...| ....+|+++..+ +.++++--.+..|++||++..+.++.+.+|...-.-+ +
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 44444444 345688888887 6778888889999999999999999999987654433 3
Q ss_pred Ec---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134 283 CW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 283 ~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
|- ..++++||+|++|+||+..+++.+..+.+|.....+++ |+|....++|++++||+|+||.....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs----wNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS----WNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe----cCCCCHHHhhccCCCCeEEEecCCcc
Confidence 33 47999999999999999999999999999885554443 58988889999999999999987643
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.3e-24 Score=206.35 Aligned_cols=244 Identities=20% Similarity=0.284 Sum_probs=191.6
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
....++||++|..|+|||..+..+.- ...||---|+.+. |.+.-.|+.+++-|- +||||+..+
T Consensus 62 ~qplFVSGGDDykIkVWnYk~rrclf------------tL~GHlDYVRt~~-FHheyPWIlSASDDQ----TIrIWNwqs 124 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTRRCLF------------TLLGHLDYVRTVF-FHHEYPWILSASDDQ----TIRIWNWQS 124 (1202)
T ss_pred CCCeEEecCCccEEEEEecccceehh------------hhccccceeEEee-ccCCCceEEEccCCC----eEEEEeccC
Confidence 55578999999999999999888753 5779999999999 999999998776554 999999998
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC--CCcEEEE-----EE-cCCEEEEEecC
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP--VGEVYSM-----VV-ANEMLFAGAQD 232 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~--~~~v~~l-----~~-~~~~l~~~~~~ 232 (394)
. +++..+.||..-|.|..|+|..++++|+|-|.+ |||+..-+....... ....... -| ..|.++--..+
T Consensus 125 r-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 R-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred C-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 8 899999999999999999999999999999999 699976544322111 1111111 11 12344555667
Q ss_pred CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCc
Q 016134 233 GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRG 306 (394)
Q Consensus 233 ~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~ 306 (394)
||...|+-++|++ .+|++|+.|..|++|.+..-+ .+-+..+|...|.++.|++ +++++.++|++|+|||+...+
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9999999999997 689999999999999987644 3556789999999999994 899999999999999999988
Q ss_pred eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
.++++......-.+++. +|..+ ++++| .|+-+.+|.++
T Consensus 284 ~v~tfrrendRFW~laa----hP~lN-LfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAA----HPELN-LFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred ceeeeeccCCeEEEEEe----cCCcc-eeeee-cCCceEEEEEc
Confidence 88888765544444443 77777 66644 45555555544
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=187.47 Aligned_cols=265 Identities=17% Similarity=0.170 Sum_probs=211.7
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-----------------CceEEEEecccCCCeEEEEec
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-----------------GLTMLAKLEGHEKAVSGIALP 183 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-----------------~~~~~~~l~~h~~~V~~l~~s 183 (394)
....|+...+.-+ |+++|.++|+++.+. .|+|.|++. ....+++|-.|.++|+++.|+
T Consensus 107 ylt~HK~~cR~aa-fs~DG~lvATGsaD~----SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 107 YLTSHKSPCRAAA-FSPDGSLVATGSADA----SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEeecccceeeee-eCCCCcEEEccCCcc----eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3446777777777 999999999988887 899999861 124688999999999999999
Q ss_pred CCCCEEEEEeCCCc--eeecCCCcEE---EecCCCCcEEEEEEcCC--EEEEEecC---------------------CCC
Q 016134 184 LRSDKLFSGSRDGT--AWNIESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQD---------------------GHT 235 (394)
Q Consensus 184 ~~~~~l~sgs~Dg~--vWd~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~~---------------------~h~ 235 (394)
|....|++++.|++ ++|+...... .......+|.++.|+|. ++++|+.. +|+
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999 5887654322 34455668999999987 77777654 799
Q ss_pred CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCC-CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee
Q 016134 236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTD-APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE 309 (394)
Q Consensus 236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~-~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~ 309 (394)
..|+++.++ +++.++++.||.|+|||--+++|+.++. +|.+ .|.+..|. ++++++.+.|..+++|.+.+++.+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999998 7899999999999999999999999885 4654 57778887 8899999999999999999999888
Q ss_pred EeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE--ecCCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134 310 AAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI--FSKHEVRVIEIGPDK-LFFTGDGAGMLG 385 (394)
Q Consensus 310 ~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~sp~~-~l~tgs~Dg~I~ 385 (394)
...+.... .........|+....++|.---..+.+.-||.++...+..+ .+.+.++.+.-+|.+ -++|++.|-.++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 87654211 11122223367777755555555688999999998665544 346779999999999 999999999999
Q ss_pred EEeCC
Q 016134 386 VWKLL 390 (394)
Q Consensus 386 vWd~~ 390 (394)
+|--.
T Consensus 422 FWyrr 426 (430)
T KOG0640|consen 422 FWYRR 426 (430)
T ss_pred eeeec
Confidence 99643
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.7e-24 Score=193.77 Aligned_cols=228 Identities=21% Similarity=0.326 Sum_probs=184.1
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIES 203 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~ 203 (394)
..+.++. |..+|.++|.+..+| .|+|+|.++ ...++.+.+|+.+|..+.|+|++ ..|++|+.|+. +||+.+
T Consensus 69 ~~v~s~~-fR~DG~LlaaGD~sG----~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 69 DVVYSVD-FRSDGRLLAAGDESG----HVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred cceeEEE-eecCCeEEEccCCcC----cEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 4677777 888899998777776 999999554 36788999999999999999965 55667777766 699988
Q ss_pred CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcE
Q 016134 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPM 279 (394)
Q Consensus 204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~ 279 (394)
..... ...+|++.|.|.+|+ +.+++||+.||+||+||+++. ..+.++. |..+|.
T Consensus 143 a~v~~---------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe 200 (487)
T KOG0310|consen 143 AYVQA---------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE 200 (487)
T ss_pred cEEEE---------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee
Confidence 76421 233888899999987 458999999999999999987 6666765 889999
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134 280 SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG 356 (394)
Q Consensus 280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~ 356 (394)
.+.+- |..+++++. ..|++||+.++..+..... |...++++.+ ..++. .|++++.|+.|++||+.+.+.+.
T Consensus 201 ~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l----~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL----ASDST-RLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred eEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe----ecCCc-eEeecccccceEEEEccceEEEE
Confidence 99988 578888775 6899999986655444433 5554554444 45676 89999999999999999999999
Q ss_pred EEecCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 357 RIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 357 ~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
.+.-..+|.+++.+|++ .++.|..||.+.+=+
T Consensus 275 s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 275 SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 88889999999999998 999999999886653
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=202.62 Aligned_cols=285 Identities=15% Similarity=0.178 Sum_probs=225.1
Q ss_pred ccccc---ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEE
Q 016134 81 LKNNL---WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS 157 (394)
Q Consensus 81 ~~~~~---~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~i 157 (394)
++|++ +|+-||.+..+.+||+.+++..- ..++....|+++. ++|.-..+|-++.+| .|.|
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~------------~f~~~~s~IT~ie-qsPaLDVVaiG~~~G----~Vii 228 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVY------------TFQEFFSRITAIE-QSPALDVVAIGLENG----TVII 228 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEE------------EecccccceeEec-cCCcceEEEEeccCc----eEEE
Confidence 55666 57789999999999999998642 2445556788888 999999999999988 9999
Q ss_pred EEcCCCceEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEE--EecCCCCcEEEEEEcCC--EEEEEe
Q 016134 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEF--SLDGPVGEVYSMVVANE--MLFAGA 230 (394)
Q Consensus 158 Wd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~ 230 (394)
++++.+ +.+.+++--.+.|+.++|.-||+. |++|...|. +||++..+.. ....|.+.|....|.+. .+++++
T Consensus 229 fNlK~d-kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 229 FNLKFD-KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEcccC-cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 999988 778888755799999999999865 566667686 6999887665 22345555555555443 333333
Q ss_pred cC------------------------------------------------------------------------------
Q 016134 231 QD------------------------------------------------------------------------------ 232 (394)
Q Consensus 231 ~~------------------------------------------------------------------------------ 232 (394)
.|
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 33
Q ss_pred ----------------------------------------------------CCC------CCEEEEEec--CCeEEEEe
Q 016134 233 ----------------------------------------------------GHT------RPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 233 ----------------------------------------------------~h~------~~V~~l~~~--~~~l~sgs 252 (394)
.+. ..+++++.+ |++.+.|+
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 222 456666665 89999999
Q ss_pred CCCeEEEEeCCCCceeEEE---cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE-----------------
Q 016134 253 MDNTIRVWELDTLEPVMTL---NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA----------------- 310 (394)
Q Consensus 253 ~Dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------- 310 (394)
..|+|-+|++++|-...++ ..|..+|+.++.+ ++.+++++.+|.+++||..+...+..
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 9999999999999888888 6999999999999 99999999999999999876542222
Q ss_pred ------------------------eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE
Q 016134 311 ------------------------AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV 366 (394)
Q Consensus 311 ------------------------~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~ 366 (394)
+.+|.. .+. ..+|+|||+ +|++++.|++|++||+.++.++-.+.-..++++
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n--rit--d~~FS~Dgr-WlisasmD~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGN--RIT--DMTFSPDGR-WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhcccc--cee--eeEeCCCCc-EEEEeecCCcEEEEeccCcceeeeEecCCccee
Confidence 112222 222 234799999 999999999999999999999999988999999
Q ss_pred EEECCCC-EEEEEeCC-CeEEEEe
Q 016134 367 IEIGPDK-LFFTGDGA-GMLGVWK 388 (394)
Q Consensus 367 l~~sp~~-~l~tgs~D-g~I~vWd 388 (394)
+.|+|+| +|||...| .-|.+|.
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEE
Confidence 9999999 99999998 5799995
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=198.98 Aligned_cols=257 Identities=16% Similarity=0.280 Sum_probs=222.5
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A 198 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v 198 (394)
...||...|+++. ++.+...++++... .|+||+..+. ++++++.. +.+.+..|-|.++++++|...|. |
T Consensus 368 ~~~GHR~dVRsl~-vS~d~~~~~Sga~~-----SikiWn~~t~-kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 368 EIGGHRSDVRSLC-VSSDSILLASGAGE-----SIKIWNRDTL-KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eeccchhheeEEE-eecCceeeeecCCC-----cEEEEEccCc-ceeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence 3559999999999 88877777755432 7999999887 88888864 38899999999999999999998 6
Q ss_pred eecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------------------CCCCCEEEEEec-
Q 016134 199 WNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------------------GHTRPVTCLAVG- 244 (394)
Q Consensus 199 Wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------------------~h~~~V~~l~~~- 244 (394)
+|+.+...+ ....|.+.+.+++..|+ .+++|+.| .-...|.|+.++
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 999888776 56789999999999998 77777777 234688899998
Q ss_pred -CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 245 -RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 245 -~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
+.+|+++--|.+|+||-+++.+..-++.+|.-+|.|+..+ +++++|||.|..|++|-+.=+.+-+.+..|...+..+
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 7899999999999999999999999999999999999888 7899999999999999998899999998888654433
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
. |-|+.. ++.+++.|+.|+-||-.+++.+..+.. ...|++++.+|+| ++++++.|..|++|....
T Consensus 599 ~----F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 599 Q----FLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred E----Ecccce-eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 3 578766 899999999999999999999998877 6679999999999 999999999999998654
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.9e-23 Score=186.12 Aligned_cols=213 Identities=26% Similarity=0.430 Sum_probs=178.9
Q ss_pred ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcC-C----EEEEEecC------------
Q 016134 172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVAN-E----MLFAGAQD------------ 232 (394)
Q Consensus 172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~-~----~l~~~~~~------------ 232 (394)
-|.+-|.++... ++.|+||++||. |||..........+|.+++.++++.. + .+++++.|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 488999999887 789999999999 79998888889999999999887743 2 58888887
Q ss_pred ----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC-------------------------CCceeEEEcCCC
Q 016134 233 ----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD-------------------------TLEPVMTLNDHT 275 (394)
Q Consensus 233 ----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~-------------------------~~~~~~~~~~h~ 275 (394)
||...|.++... +..+++||.|.+|+||+.. ++.++.++.+|.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 899999999975 7899999999999999932 134677889999
Q ss_pred CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-
Q 016134 276 DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM- 353 (394)
Q Consensus 276 ~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~- 353 (394)
.+|.++.|. ...+++++.|.+|+.||+.+++....+.+... .. ++.++|... +|++|+.|..|++||.+++.
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~--~i~~~~~~~-Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LN--CISYSPLSK-LLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcc---ee--Eeecccccc-eeeecCCCCceeecCCCCCCC
Confidence 999999999 77899999999999999999988877765432 22 334578777 99999999999999999763
Q ss_pred -eeE-EE-ecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134 354 -ERG-RI-FSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 354 -~~~-~~-~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+. ++ .|...|.++.|+|.. +|++++.|+++++||+.+.
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 222 22 236679999999988 9999999999999999864
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=182.00 Aligned_cols=222 Identities=19% Similarity=0.329 Sum_probs=173.4
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------ 232 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------ 232 (394)
.++++.|.||++.|+.++.......+.+++.|.+ ||.++++.++ ...+|.+.|+++.|++. .+++++.|
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3556666677777777766655566667777766 6777777766 55667777777777665 55555544
Q ss_pred ----------------------------------------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134 233 ----------------------------------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR 258 (394)
Q Consensus 233 ----------------------------------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~ 258 (394)
+|...|.+..|- ++.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 788888888884 78999999999999
Q ss_pred EEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEE
Q 016134 259 VWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335 (394)
Q Consensus 259 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l 335 (394)
+||+++++++..+.+|....+.++-+ .+++++.+.|.+.++||++.. ..+..+.+|...+.... |..+.+ +
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v----F~~dd~--v 371 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV----FNTDDR--V 371 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE----EecCCc--e
Confidence 99999999999999999999888877 568889999999999999853 23455666665544433 455554 8
Q ss_pred EEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 336 ICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 336 ~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
++|++|.+|+|||+++. ..+.++....+++.++++..+ .|+.--.+..|++||++-
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 99999999999999987 466777778899999999888 888888889999999874
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=9.4e-24 Score=192.15 Aligned_cols=245 Identities=18% Similarity=0.251 Sum_probs=183.4
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC---------ceEEEEecccCCCeEEEEecCC-CCEEEEEe
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG---------LTMLAKLEGHEKAVSGIALPLR-SDKLFSGS 193 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---------~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs 193 (394)
-|.+.|..+.+.......+|+....+ .|.|||..+- ..+-..|.+|++.=++|+|++. .-.|++++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~----dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSG----DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCC----CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 34455555552222344455554444 8999998532 2233488999998899999984 45789999
Q ss_pred CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC--CCc
Q 016134 194 RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD--TLE 266 (394)
Q Consensus 194 ~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~--~~~ 266 (394)
.|++ +||+....... .+ ........+|...|..++|+ .++|++++.|+.+.|||+| +.+
T Consensus 198 ~d~~i~lwdi~~~~~~~------~~--------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 198 DDHTICLWDINAESKED------KV--------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred CCCcEEEEeccccccCC------cc--------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 9998 69997654320 00 01112334899999999997 6889999999999999999 567
Q ss_pred eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC
Q 016134 267 PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN 342 (394)
Q Consensus 267 ~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg 342 (394)
+.+..++|...|.|++|+ +..||+||.|++|.+||+|+.. ++..+..|...+ +.+.|+|....+|++++.|+
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev----~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV----FQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce----EEEEeCCCCCceeEecccCC
Confidence 778889999999999998 6789999999999999999754 455555555433 33457999888999999999
Q ss_pred eEEEEECCCCceeE------------EEec---CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 343 TVHLYELPSFMERG------------RIFS---KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 343 ~I~iwd~~~~~~~~------------~~~~---~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
.+.|||+..-.... .+.| ...|..+.|+|.. .|++.++|+.+.||++.
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999987532221 1223 4569999999998 99999999999999976
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.2e-23 Score=189.90 Aligned_cols=238 Identities=18% Similarity=0.288 Sum_probs=189.1
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE---E-------------EEe-cccCCCeEEEEecC
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM---L-------------AKL-EGHEKAVSGIALPL 184 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~---~-------------~~l-~~h~~~V~~l~~s~ 184 (394)
...|..++.+++ ++|+..++.+++-+| +|.-|++.++... + ..- ++|.+.|.+++.++
T Consensus 138 ~~~H~~s~~~va-ls~d~~~~fsask~g----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 138 IGKHQLSVTSVA-LSPDDKRVFSASKDG----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eccccCcceEEE-eeccccceeecCCCc----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 347778999998 999888887666665 8999998766322 1 111 37899999999999
Q ss_pred CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEE
Q 016134 185 RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVW 260 (394)
Q Consensus 185 ~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iw 260 (394)
|+++|++|+.|.. ||+.++.+.+.. +.+|.+.|.+++|- .+.|++++.|++|++|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~---------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV---------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc---------------------ccccccceeeeeeecCccceeeeecCCceEEE
Confidence 9999999999998 699999886632 22788899999986 5789999999999999
Q ss_pred eCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134 261 ELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338 (394)
Q Consensus 261 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg 338 (394)
+++....+.++.+|++.|..+... +..+-+++.|+++++|++.. +....+..+.....+.++ .+. . .+++|
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~---In~--~-HfvsG 344 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAF---IND--E-HFVSG 344 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEE---ecc--c-ceeec
Confidence 999988999999999999999887 45555566999999999954 333445555434444444 232 2 68999
Q ss_pred eCCCeEEEEECCCCceeEEEec-----C--------CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 339 CNDNTVHLYELPSFMERGRIFS-----K--------HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 339 s~dg~I~iwd~~~~~~~~~~~~-----~--------~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+.||.|.+|++.+.+++..... . .+|++++..|.. ++++|+.+|+|++|.+.+.
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999999998887766543 1 179999999988 9999999999999998765
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=3.4e-23 Score=206.11 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=217.3
Q ss_pred cccccccCC--CCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc
Q 016134 83 NNLWVSSGS--EDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC 160 (394)
Q Consensus 83 ~~~~~~s~s--~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~ 160 (394)
+..+++||+ .|..++||+.+.=.-....+..+-.-.......|..+|.+|. |++++.++|.++- |+.|.||..
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR-~S~dG~~lAsGSD----D~~v~iW~~ 98 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR-FSPDGSYLASGSD----DRLVMIWER 98 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEE-ECCCCCeEeeccC----cceEEEeee
Confidence 778899999 799999999874221000000000011234557888999999 9999999986554 459999987
Q ss_pred CC-----------------CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEE
Q 016134 161 GE-----------------GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVV 221 (394)
Q Consensus 161 ~~-----------------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~ 221 (394)
.. .++.+..+.+|...|.+++|+|++.+|++++.|++ ||+..+.+.+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~------------- 165 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK------------- 165 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee-------------
Confidence 62 14578999999999999999999999999999999 69999886553
Q ss_pred cCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC------CcEEEEEc--CCEEEEE
Q 016134 222 ANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD------APMSLLCW--DQFLLSC 291 (394)
Q Consensus 222 ~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~------~v~~l~~~--~~~l~s~ 291 (394)
..++|...|..+.|+ |++|++-+.|++|+||++.+....+.+..+-. .+..+.|+ |++|++.
T Consensus 166 --------vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 166 --------VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred --------eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 233788888888898 89999999999999999888777777765433 35666777 8899886
Q ss_pred eC----CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC----CCC--------cEEEEEeCCCeEEEEECCCCcee
Q 016134 292 SL----DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP----DGK--------PVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 292 s~----Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~g~--------~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
.. -.++.|.+-.+.+.-..+.+|..+..++.+...+-. +|. .++|+|+.|++|.||.....+++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 43 347888887777777888888876665554211100 111 17899999999999999887777
Q ss_pred EEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 356 GRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 356 ~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.. ...|..++|+||| .|+.+|.||+|.+..++++
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 66655 7889999999999 9999999999999998764
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=2.3e-22 Score=171.70 Aligned_cols=196 Identities=21% Similarity=0.329 Sum_probs=162.5
Q ss_pred EecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-- 244 (394)
Q Consensus 169 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-- 244 (394)
.++||+.+++.|.++.+|++|+|++.|.+ ||-..+|+.+ |+.++|++.|+|+..+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------Gty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------GTYDGHTGAVWCCDIDWD 63 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------eeecCCCceEEEEEecCC
Confidence 46899999999999999999999999998 7888777765 3566999999999886
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-----CCcEEEEEeCC-------CceeeE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-----DHTIKVWFATG-------RGNLEA 310 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-----Dg~i~vwd~~~-------~~~~~~ 310 (394)
...+++|+.|.++++||+++|+++.+++ -..+|..+.|+ +++++.+.. .+.|.++|++. .++...
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 6889999999999999999999999998 56789999998 555555543 35799999983 344556
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--cCCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--SKHEVRVIEIGPDK-LFFTGDGAGMLGVW 387 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vW 387 (394)
+..+...... ..|.|-++ +|++|.+||.|.+||++++.+..... +.+.|+.|++++|. +++|++.|.+-++|
T Consensus 143 I~t~~skit~----a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITS----ALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceee----eeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 6555533332 23689999 99999999999999999987665543 36689999999999 99999999999999
Q ss_pred eCCC
Q 016134 388 KLLA 391 (394)
Q Consensus 388 d~~~ 391 (394)
|+.+
T Consensus 218 D~~t 221 (327)
T KOG0643|consen 218 DVRT 221 (327)
T ss_pred eccc
Confidence 9864
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.9e-22 Score=171.81 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=196.6
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
++..+++.|.|.+++|+|..++......+| -..|- ..+.+-+.....+ ..+...|.+||..++.+
T Consensus 25 ~G~~litss~dDsl~LYd~~~g~~~~ti~s--------kkyG~----~~~~Fth~~~~~i---~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 25 DGLLLITSSEDDSLRLYDSLSGKQVKTINS--------KKYGV----DLACFTHHSNTVI---HSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCCEEEEecCCCeEEEEEcCCCceeeEeec--------ccccc----cEEEEecCCceEE---EccCCCCCceEEEEeec
Confidence 777788888899999999999986542210 11121 1111011111111 11224567999999999
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC 240 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~ 240 (394)
+ +.++.+.||...|++|+.+|-++.++|++.|++ +||++..++.-+... ...+ .
T Consensus 90 N-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------~~~p--i 145 (311)
T KOG1446|consen 90 N-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------SGRP--I 145 (311)
T ss_pred C-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------CCCc--c
Confidence 8 899999999999999999999999999999999 699998776532111 1122 2
Q ss_pred EEec--CCeEEEEeCCCeEEEEeCCCC--ceeEEEcC---CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 241 LAVG--RSRLCSGSMDNTIRVWELDTL--EPVMTLND---HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 241 l~~~--~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~---h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
.+|+ |-++|++.....|++||++.. .+..++.- -....+.|.|+ |++|+.+...+.+.+.|.-.+..+..+
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 3555 556777777779999999874 35555543 35678899999 899999999999999999999988887
Q ss_pred ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
..+..... ..+..+|+||++ ++++|+.||+|.+|+++++..+..+.. ..++.++.|+|.- ++++++ ..+.+|-
T Consensus 226 s~~~~~~~-~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 226 SGYPNAGN-LPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred eeccCCCC-cceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence 77665433 335667899999 999999999999999999999988877 5679999999997 666654 5677775
Q ss_pred CC
Q 016134 389 LL 390 (394)
Q Consensus 389 ~~ 390 (394)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 44
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.6e-22 Score=184.25 Aligned_cols=269 Identities=17% Similarity=0.187 Sum_probs=203.4
Q ss_pred cccccccCCCCCcccccccCCCCCC---CCC----CCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYT---GPK----NSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL 155 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~---~~~----~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i 155 (394)
+.+.+.++|.|.+|--|++.++.-. -.+ ++-.-.....+ .+|.+.+-+++ .++++.|++++..+. .|
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~a-vS~Dgkylatgg~d~----~v 226 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLA-VSSDGKYLATGGRDR----HV 226 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEE-EcCCCcEEEecCCCc----eE
Confidence 7778889999999999999998732 111 11111222223 48889999999 999999999665554 99
Q ss_pred EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC
Q 016134 156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD 232 (394)
Q Consensus 156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~ 232 (394)
.||+..+. +.++.+.+|.+.|.+++|-.....|++++.|+. +|+++....+ .+.
T Consensus 227 ~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly---------------------- 283 (479)
T KOG0299|consen 227 QIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY---------------------- 283 (479)
T ss_pred EEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh----------------------
Confidence 99999987 889999999999999999888889999999999 6999877655 222
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceee
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLE 309 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~ 309 (394)
+|...|.+|... +..+-+|+.|+++++|++.. +....+.+|.+.+-|++|- ...|++|+.+|.|.+|++...+++.
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCcee
Confidence 777788877764 44555566999999999943 4445567888899999998 7899999999999999998887776
Q ss_pred EeecccCCc----------ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC----ceeEEEecCCcEEEEEECCCC-E
Q 016134 310 AAYTHKEDN----------GVLALGGLNDPDGKPVLICACNDNTVHLYELPSF----MERGRIFSKHEVRVIEIGPDK-L 374 (394)
Q Consensus 310 ~~~~~~~~~----------~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~sp~~-~ 374 (394)
.......-. .+.++. ..|... ++++|+.+|.|++|-+..+ .++..+...+-|++++|+++| .
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla--~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLA--VIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKR 439 (479)
T ss_pred EeeccccccCCccccccccceeeeE--ecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCE
Confidence 654322111 223332 345555 9999999999999999887 344455557789999999999 4
Q ss_pred EEEE-eCCCeE
Q 016134 375 FFTG-DGAGML 384 (394)
Q Consensus 375 l~tg-s~Dg~I 384 (394)
|++| +....+
T Consensus 440 ivagiGkEhRl 450 (479)
T KOG0299|consen 440 IVAGIGKEHRL 450 (479)
T ss_pred EEEeccccccc
Confidence 5554 333333
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.1e-23 Score=173.16 Aligned_cols=247 Identities=17% Similarity=0.146 Sum_probs=186.1
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--eEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT 197 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~ 197 (394)
..+|+..|.... ..-.+..||+.+.|+ +|+|+.+.++. +++.+|.||+++|..++|.. -|.+||+++.||.
T Consensus 7 dt~H~D~IHda~-lDyygkrlATcsSD~----tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQ-LDYYGKRLATCSSDG----TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhh-hhhhcceeeeecCCc----cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 345555666666 667788899988887 99999997654 78999999999999999954 7999999999999
Q ss_pred --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC---cee
Q 016134 198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL---EPV 268 (394)
Q Consensus 198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~---~~~ 268 (394)
||.-+.++-.....+. .|...|++++|. +-.|++++.||.|.|.+.++. ...
T Consensus 82 VIiWke~~g~w~k~~e~~-------------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHA-------------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS 142 (299)
T ss_pred EEEEecCCCchhhhhhhh-------------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence 6998888543332222 678888888885 457999999999999998754 223
Q ss_pred EEEcCCCCCcEEEEEc-----C-----------CEEEEEeCCCcEEEEEeCCCc--eeeEeecccCCcceEEEEeeECCC
Q 016134 269 MTLNDHTDAPMSLLCW-----D-----------QFLLSCSLDHTIKVWFATGRG--NLEAAYTHKEDNGVLALGGLNDPD 330 (394)
Q Consensus 269 ~~~~~h~~~v~~l~~~-----~-----------~~l~s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ 330 (394)
+....|.-.|+++++. | +.|++|+.|..|+||+..++. ....+..|..-+.-++++.... -
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-l 221 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-L 221 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-C
Confidence 4456799999999986 2 469999999999999987752 2233555665555555432211 1
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc--eeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134 331 GKPVLICACNDNTVHLYELPSFM--ERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 331 g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.+..|+++++||+|.||..+... -..++.. ...+..+.|++.| .|+.++.|+.|.+|.-+.++
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 23379999999999999876331 1222222 5679999999999 99999999999999866543
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3.4e-22 Score=170.20 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=195.3
Q ss_pred CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCC
Q 016134 72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGD 150 (394)
Q Consensus 72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~ 150 (394)
.-..++|+. ++.++++||-|+++++||++...+.... ..+||...|..+. |.| ....+++++.+
T Consensus 22 ~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~----------~~~gh~~svdql~-w~~~~~d~~atas~d-- 86 (313)
T KOG1407|consen 22 KVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKEL----------VYRGHTDSVDQLC-WDPKHPDLFATASGD-- 86 (313)
T ss_pred cceEEEEcc--cCceeeecccCCceEEEEecchhhhhhh----------cccCCCcchhhhe-eCCCCCcceEEecCC--
Confidence 456788998 9999999999999999999988654322 4678887888777 655 34445544443
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCC---E
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE---M 225 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~---~ 225 (394)
.+|++||...+ +++.......+.| -+.|+|+|++++.++.|..| .|.++.+........-.+.-+.|+.+ +
T Consensus 87 --k~ir~wd~r~~-k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 87 --KTIRIWDIRSG-KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred --ceEEEEEeccC-cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 49999999888 6666665544444 57899999999999999884 77777766655555556666777644 3
Q ss_pred EEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--
Q 016134 226 LFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-- 284 (394)
Q Consensus 226 l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-- 284 (394)
+++.+.. .|.....||.|+ |.+||+|+.|-.+.+||++..-|++.+..+.-+|..+.|+
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 3333222 799999999998 7999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---------CeEEEEECC
Q 016134 285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---------NTVHLYELP 350 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---------g~I~iwd~~ 350 (394)
|++||++|+|..|-|=+++++..+..+.... ..+.++|+|... +||-++.| |.|+||-+.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~~~~-----~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIPCEG-----PTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEeeccC-----CceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999999999998877665322 223445799887 78777654 456666544
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=188.13 Aligned_cols=232 Identities=19% Similarity=0.291 Sum_probs=187.2
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~ 204 (394)
.+..+- |-+....++++. .|..|++|++..+ .+.+.+|.|..++|+++.|.++++++++++.|+. +|++...
T Consensus 177 ev~~v~-~l~~sdtlatgg----~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 177 EVHDVE-FLRNSDTLATGG----SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred ccceeE-EccCcchhhhcc----hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 444444 555545555554 4559999998544 3588899999999999999999999999999998 7999988
Q ss_pred cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEE
Q 016134 205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~ 282 (394)
+... ++.+|+..|+++.|. ...+++|+.|.+|++||+....|.+++- ..+.+..|.
T Consensus 252 r~~~---------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 252 RLRH---------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred hhhh---------------------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence 7652 233788888888886 3449999999999999999988888765 456677887
Q ss_pred EcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--
Q 016134 283 CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-- 360 (394)
Q Consensus 283 ~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-- 360 (394)
.....++++-.|++|++||++...+......+. .+..+.+ ++++. -|++.+.|.++.+.|+++.+....+..
T Consensus 310 ~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l----s~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 310 CSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL----SMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred ecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEee----ccCCe-EEeeecCCCceeeeecccccEEEEeeccc
Confidence 778889999999999999999988887776554 3444444 78888 566669999999999999988877765
Q ss_pred ---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 361 ---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 361 ---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+..+.+.|+|++ |+++|+.||.|+||++.+.
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 5568999999999 9999999999999998765
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.7e-22 Score=174.04 Aligned_cols=234 Identities=16% Similarity=0.183 Sum_probs=176.2
Q ss_pred cceeeeccccc-cccccCCCeecCCCCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134 127 STSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE 202 (394)
Q Consensus 127 ~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~ 202 (394)
-+|..++ |+| ...+++.++.+| +||+|+++. +...-+....|.++|.+++|+.||..+++|+.|+. +||+.
T Consensus 28 DsIS~l~-FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 28 DSISALA-FSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cchheeE-eccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 4788888 999 455555666666 999999976 32333566789999999999999999999999999 79999
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v 278 (394)
+++...+. .|..+|.++.|-+ ..|++||.|++|+.||++...++.++. -.+.+
T Consensus 103 S~Q~~~v~----------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 103 SGQVSQVA----------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred CCCeeeee----------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 99877655 4555666666641 368999999999999999999999887 45788
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--eE
Q 016134 279 MSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--RG 356 (394)
Q Consensus 279 ~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~ 356 (394)
+++.....+++.+..++.|.+|+++++..........-.-...++. ...+.+ ..+.|+-+|.+.|..+..+.. -.
T Consensus 160 Ya~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va--~f~d~~-~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 160 YAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA--CFQDKD-GFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE--EEecCC-ceEeeeecceEEEEecCCCCccCce
Confidence 9888888999999999999999998764433322222222223332 234555 347799999999999887522 22
Q ss_pred EEec----------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 357 RIFS----------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 357 ~~~~----------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.+.. -..|++|+|+|.. .|+|.+.||++.+||-+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 2221 1248889999976 999999999999999654
No 88
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=1.9e-23 Score=191.25 Aligned_cols=224 Identities=21% Similarity=0.337 Sum_probs=184.0
Q ss_pred eEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCC-CcEE-EecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134 165 TMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIES-SAEF-SLDGPVGEVYSMVVANE--MLFAGAQD----- 232 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~-~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~----- 232 (394)
+.+.++.||+..|+++.|.| .+.+|++++.|+. ||++-. +.++ .+.+|..+|.++.|+++ .++++++|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 66889999999999999999 8999999999999 699876 6666 67899999999999998 88888888
Q ss_pred -----------CC-CCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 233 -----------GH-TRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 233 -----------~h-~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
.| ...+.|+.|+ .+.+++|+.|+.|+.||+++++.++++..|-+.|..+.|. +..+++.++|+
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 22 3456788887 3789999999999999999999999999999999999998 88999999999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee---EEEec---CCcEEEEEE
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER---GRIFS---KHEVRVIEI 369 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~---~~~v~~l~~ 369 (394)
+++||+.+.+-.++.+..... ....++ ..+|+++ ++++-+.|+.|.||.+...-.. ..+.. .+.-..+.|
T Consensus 365 s~riWe~~~~v~ik~i~~~~~-hsmP~~--~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEM-HTMPCL--TLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred cEEEEEcCCCccchhhcchhh-ccCcce--ecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999987766555443322 222222 2389998 9999999999999987643211 11111 445678899
Q ss_pred CCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 370 GPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 370 sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+||| +|++|+.||.+.+||+.+-
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhh
Confidence 9999 9999999999999998763
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-22 Score=184.88 Aligned_cols=229 Identities=16% Similarity=0.209 Sum_probs=177.9
Q ss_pred ceeeecccccccccc-CCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134 128 TSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~ 204 (394)
.|.++. |+|...+- |..+.. .+.|++..+. ....++.--++.|.++.|-.||++|+.|...|. |+|+.+.
T Consensus 28 ~vssl~-fsp~~P~d~aVt~S~-----rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 28 SVSSLC-FSPKHPYDFAVTSSV-----RVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cceeEe-cCCCCCCceEEeccc-----EEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 667777 77755442 222222 6888988765 566667778899999999999999999999998 6886553
Q ss_pred cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134 205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l 281 (394)
..++ ...+|+.+|..+.|+ +..|++|+.|+.+++||+.+...+..+.+|++.|.+.
T Consensus 101 ~iLR---------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 101 VILR---------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred HHHH---------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 3332 222677777777776 5679999999999999999988777899999999999
Q ss_pred EEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEE
Q 016134 282 LCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGR 357 (394)
Q Consensus 282 ~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~ 357 (394)
++. +.+++||+.||+|++||++..........|..++..+. +-|.|. ++++++ .+.|+|||+.++. ++..
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl----~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL----ALPSGS-LIASAG-GNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE----EcCCCC-EEEEcC-CCeEEEEEecCCceehhh
Confidence 998 45899999999999999998754444445555554443 468888 788776 4689999999664 4444
Q ss_pred Ee-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 358 IF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 358 ~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+. |...|+|+++..++ .|++++-|+.|++||+.
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 44 56789999999999 99999999999999964
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.9e-23 Score=192.47 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=206.1
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-
Q 016134 86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL- 164 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~- 164 (394)
++.||+-|.+|++|+.....-.... .+..-..-|.-.|..+. ..-.+. ...+.+.|-+|++|+.....
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~------~~~asme~HsDWVNDii-L~~~~~----tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPST------PYIASMEHHSDWVNDII-LCGNGK----TLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred eEEecCCCceEEEeccccccCCccc------chhhhhhhhHhHHhhHH-hhcCCC----ceEEecCCceEEEeecccCcc
Confidence 3788999999999998754321000 01111223333444443 222232 23344556699999996553
Q ss_pred eEEEEecccCCCeEEEEe-cCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC-CCCCCEEE
Q 016134 165 TMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD-GHTRPVTC 240 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~-s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~-~h~~~V~~ 240 (394)
-++.++..|++.|.||+. .++..++|||+-|+. |||++++....... .+.+-+.+.. ++...|.+
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-----------~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-----------FNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-----------ccccccccCCCCCccceee
Confidence 678889999999999999 888999999999999 69999884411000 0001111111 78889999
Q ss_pred EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134 241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE 316 (394)
Q Consensus 241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 316 (394)
++.+ +..|++|+..+.+++||.++.+.+..+.+|+..|..+..+ |..+++++.|++|++||+..++++.++..|.+
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 9998 4589999999999999999999999999999999999988 88999999999999999999999999888887
Q ss_pred CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.+..+.. +|+=. .+.+|+.|+.|..=|+++......+ ..+++|..+..+... -+..+..|+.|+-|.+.
T Consensus 257 ~VWaL~~----~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 257 GVWALQS----SPSFT-HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEEee----CCCcc-eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 6433333 56666 8999999999999999996444444 347788888877554 56888889999999765
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=191.30 Aligned_cols=281 Identities=17% Similarity=0.203 Sum_probs=208.6
Q ss_pred cccccccCCCCCcccccccCCCCCCC--CCCCCCCc--------cc---------------cccCCCCccceeeeccccc
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTG--PKNSSSAS--------ST---------------VSDESGDKSTSKKTTLKNV 137 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~--~~~s~~~~--------~~---------------~~~~~g~~~~v~~~~~~~~ 137 (394)
|.+-++|.|.|.|||+||++....+. +.+-.++. .. ..-..+.+.-+++++ .+|
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~-vSp 469 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA-VSP 469 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE-ECC
Confidence 45557899999999999999733211 00111110 00 001224456788998 999
Q ss_pred cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC---CCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--AWNIESSAEFSLDGP 212 (394)
Q Consensus 138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~ 212 (394)
+++++|+ |+.+|.|||+++.+- +....+++|...|.|+.|+. ..++||+++.|.. |+|+...
T Consensus 470 ~gqhLAs----GDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------- 536 (1080)
T KOG1408|consen 470 DGQHLAS----GDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------- 536 (1080)
T ss_pred Ccceecc----cCccCceEEEEehhh-hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------
Confidence 9999984 566669999999765 77788899999999999975 3588999999998 4665433
Q ss_pred CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C--CeEEEEeCCCeEEEEeCCCCceeEEEcCC-----CCCcEEEEE
Q 016134 213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R--SRLCSGSMDNTIRVWELDTLEPVMTLNDH-----TDAPMSLLC 283 (394)
Q Consensus 213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-----~~~v~~l~~ 283 (394)
+.+..+.++|...|+++.|- + ..+++++.|+.|..--.+.......|..| ...++.++.
T Consensus 537 ------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 537 ------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred ------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 22334667999999999995 2 46899999998764333221112222222 245677777
Q ss_pred c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS- 360 (394)
Q Consensus 284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 360 (394)
. .+++++++.|+.|+|||+.+++..+.+.+.......+ +.+..+|.|- +|++.+.|.++.++|.-+++++.++.+
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l-IKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL-IKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCce-EEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCc
Confidence 7 6899999999999999999999998888755442221 2334589998 999999999999999999999988876
Q ss_pred CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
..-|+.+.|.+|- .|++.+.||+|.||.+..
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECch
Confidence 5569999999998 999999999999999864
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-20 Score=158.09 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=181.2
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcE----------EEecCCCCcEEEEEEcCC-
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAE----------FSLDGPVGEVYSMVVANE- 224 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~----------~~~~~~~~~v~~l~~~~~- 224 (394)
++.+.++. .+..|.+++|+|.|.+.+.|+...+ +-|++.+.. .+...|.+.|++.+|++.
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 45555554 4678999999999999999998887 344433221 134568899999999998
Q ss_pred -EEEEEecC-----------------------CCCCCEEEEEec------CCeEEEEe-CCCeEEEEeCCCCceeEEEcC
Q 016134 225 -MLFAGAQD-----------------------GHTRPVTCLAVG------RSRLCSGS-MDNTIRVWELDTLEPVMTLND 273 (394)
Q Consensus 225 -~l~~~~~~-----------------------~h~~~V~~l~~~------~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~ 273 (394)
.+++|+.| -|.+.|..++|- +.+|++++ .|..|.+=|..+++..+.+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 78888877 588999999993 34677665 477888889999999999999
Q ss_pred CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc---eEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134 274 HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG---VLALGGLNDPDGKPVLICACNDNTVHLYEL 349 (394)
Q Consensus 274 h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~ 349 (394)
|++-|.++--+ +-++++++.|.+|++||++-..++..+........ .....++.+|.|+ +|++|-.|....+||+
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEe
Confidence 99999988544 88999999999999999998888777654322211 1222345699999 9999999999999999
Q ss_pred CCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 350 PSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 350 ~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+.+..++.+.. ...|+++.|+|.. ++++++.|..|++=|++-
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99998887754 7789999999998 999999999999998864
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.6e-21 Score=165.96 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=169.7
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEec-------
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQ------- 231 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~------- 231 (394)
+++.+.+..-...|++|.|+++|.+|++++.|.+ |+|..+++.+ .+....-.+..+.|... .++.++.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3555666667889999999999999999999977 6999998877 34444444555555332 3333322
Q ss_pred -------------CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCc
Q 016134 232 -------------DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHT 296 (394)
Q Consensus 232 -------------~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 296 (394)
.||...|++|+.+ ++.+++++.|++|++||++..++...+.....+|.+....|-++|++.....
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCe
Confidence 2999999999998 6899999999999999999988887776555565555544788888887779
Q ss_pred EEEEEeCCC--ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCc-EEEEEEC
Q 016134 297 IKVWFATGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHE-VRVIEIG 370 (394)
Q Consensus 297 i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~-v~~l~~s 370 (394)
|++||+|.- .+...+.... ....-.-.+.|+|+|+ +|+.+...+.+++.|.-+|..+..+.. ... -....|.
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 999999863 3333333321 1222222345899999 666677889999999999988777765 221 3567899
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCC
Q 016134 371 PDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 371 p~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
||+ .+++|+.||+|.+|++++.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 999 9999999999999999765
No 94
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=180.18 Aligned_cols=255 Identities=15% Similarity=0.215 Sum_probs=183.6
Q ss_pred CCCCccceeeeccccccc-cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--
Q 016134 122 ESGDKSTSKKTTLKNVCC-HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-- 198 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v-- 198 (394)
+.||..-|.+++ -+|.. .-++ +|+-||.|+|||+.+. +++.+++.|.+.|..|++.. ..+++++.|.+|
T Consensus 62 L~gHrdGV~~la-khp~~ls~~a----SGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 62 LDGHRDGVSCLA-KHPNKLSTVA----SGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccccccccchhh-cCcchhhhhh----ccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 468887888887 66654 3344 4555559999999876 88999999999999999987 789999999984
Q ss_pred eecCCCcEEEecCCCCcEEEEEEcC--CEEEEEecC------CC----------CCCEEEEEec---CCeEEEEeCCCeE
Q 016134 199 WNIESSAEFSLDGPVGEVYSMVVAN--EMLFAGAQD------GH----------TRPVTCLAVG---RSRLCSGSMDNTI 257 (394)
Q Consensus 199 Wd~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~~------~h----------~~~V~~l~~~---~~~l~sgs~Dg~V 257 (394)
|.++... .........+..+.-.. +.+++++.+ .+ ...|.++.|+ .+.|+++.+|+.|
T Consensus 134 wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 134 WKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 8866532 11111112222222211 133333322 22 3455666666 3679999999999
Q ss_pred EEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcE
Q 016134 258 RVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 258 ~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~ 334 (394)
.|||+++.++++.+. ....-..++|+ .-.|+++++|..+..||++.-.. +.....| ....+.+.|+|.|+ -
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh----vsAV~dVdfsptG~-E 286 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH----VSAVMDVDFSPTGQ-E 286 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccc----ceeEEEeccCCCcc-h
Confidence 999999999887765 33455778888 45788899999999999986432 3333333 22334567899999 8
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 335 LICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+++|+.|.+|+||.+..+.....+.. .+.|.++.|+-|. ++++||.|+.|++|....
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999998755444333 5679999999999 999999999999998654
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.7e-22 Score=180.54 Aligned_cols=261 Identities=22% Similarity=0.317 Sum_probs=190.1
Q ss_pred cccCCCCCc-ccccccCCCCCCCCCCCCCCccccccCCCC-ccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134 87 VSSGSEDRI-PHVRNRENPGYTGPKNSSSASSTVSDESGD-KSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL 164 (394)
Q Consensus 87 ~~s~s~d~~-~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~ 164 (394)
+.+.|.|.. +.+||+.|+...- ..+|. .-.-.+. --....|++++..... .|++|.+....
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~------------~ykg~~~a~~~sl--~~l~~~yllsaq~~rp---~l~vw~i~k~~ 72 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLL------------QYKGSYLAQAASL--TALNNEYLLSAQLKRP---LLHVWEILKKD 72 (476)
T ss_pred EeccCCCCcceeEEecCCCceeE------------EecCcccccchhh--hhhchhheeeecccCc---cccccccCchh
Confidence 456677766 9999999987421 01111 1000011 1111244444333332 89999987653
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
+.. ...--.++|.+++-+|+|.+|+.|+..+. +|.+.+|..+.. .+.|-..|+|+.
T Consensus 73 ~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---------------------~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 73 QVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---------------------LSAHYQSITCLK 130 (476)
T ss_pred hhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---------------------HHhhccceeEEE
Confidence 333 23335688999999999999999988887 699999998742 227888999999
Q ss_pred ec--CCeEEEEeCCCeEEEEeCC---------CCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCce
Q 016134 243 VG--RSRLCSGSMDNTIRVWELD---------TLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
|+ +.+|++|+.||.|.+|++- +-++++.|..|.-+|+++... ..+|+|+|.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 97 7899999999999999873 346788999999999999987 36899999999999999998877
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc----------------eeEEEec-C--CcEEEEE
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM----------------ERGRIFS-K--HEVRVIE 368 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~----------------~~~~~~~-~--~~v~~l~ 368 (394)
+..+... .....+++ +|-+. .+.+|+.+|.|.+.++.... .+..+.+ . ..|+|++
T Consensus 211 Llti~fp-~si~av~l----Dpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 211 LLTITFP-SSIKAVAL----DPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred eEEEecC-CcceeEEE----ccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 6665432 22344444 88887 88889999999998875432 1111222 2 4799999
Q ss_pred ECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 369 IGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 369 ~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++-|| +|++|+.||.|+|||+.++
T Consensus 285 is~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EecCccEEEeeCCCCCEEEEecchH
Confidence 99999 9999999999999998764
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=5.5e-22 Score=173.54 Aligned_cols=218 Identities=23% Similarity=0.284 Sum_probs=184.1
Q ss_pred ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE---------EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134 172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF---------SLDGPVGEVYSMVVANE--MLFAGAQD------ 232 (394)
Q Consensus 172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~---------~~~~~~~~v~~l~~~~~--~l~~~~~~------ 232 (394)
+.+..+.|..|+|||++|++|+.||. ||+..+|+.. .+.-++.+|.++.|+.| ++++|+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45677899999999999999999998 6999988753 24457789999999998 88888887
Q ss_pred -------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 233 -------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 233 -------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
.|+..|+|+.|+ +..+++++.|.++||.-+++|++++.|.+|++.|+...|. |..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 699999999998 6789999999999999999999999999999999999998 88999999999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECC
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGP 371 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp 371 (394)
+|++|+..+.+++.++........+..+. .-|.+...++++...++|+|.++. ++.+..+.. .+...+...+|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~--~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVI--LLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEE--EcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC
Confidence 99999999999998887766554444432 345555578888889999999987 455555544 34466677999
Q ss_pred CC-EEEEEeCCCeEEEEeCCCC
Q 016134 372 DK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 372 ~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.| .+.+.++|+.++.|.+.+.
T Consensus 448 kGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecC
Confidence 99 9999999999999987654
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=170.87 Aligned_cols=258 Identities=14% Similarity=0.179 Sum_probs=194.8
Q ss_pred eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE
Q 016134 129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE 206 (394)
Q Consensus 129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~ 206 (394)
..+.. |+++|.++|.+|.+| .|-|||..+- ...+.+.+|..+|++++|+++|++|+|+|.|.. +||+..+..
T Consensus 26 a~~~~-Fs~~G~~lAvGc~nG----~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQ-FSRWGDYLAVGCANG----RVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEE-eccCcceeeeeccCC----cEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence 45566 999999999999999 8999999875 788899999999999999999999999999998 599999998
Q ss_pred EEecCCCCcEEEEEEcCC--EEEEEe-cC---------------------CCCCCE-EEEEec--CCeEEEEeCCCeEEE
Q 016134 207 FSLDGPVGEVYSMVVANE--MLFAGA-QD---------------------GHTRPV-TCLAVG--RSRLCSGSMDNTIRV 259 (394)
Q Consensus 207 ~~~~~~~~~v~~l~~~~~--~l~~~~-~~---------------------~h~~~V-~~l~~~--~~~l~sgs~Dg~V~i 259 (394)
+.......+|....|+|. ..++++ .+ +..+.+ .+..|+ |+++++|...|.+.+
T Consensus 100 l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 100 LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 877777888888888875 222222 21 111111 111244 789999999999999
Q ss_pred EeCCCCceeEEEcCCC-CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc------eeeEeecccCCcceEE-EEeeECC
Q 016134 260 WELDTLEPVMTLNDHT-DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG------NLEAAYTHKEDNGVLA-LGGLNDP 329 (394)
Q Consensus 260 wd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~-~~~~~s~ 329 (394)
+|..+.+++..++-.+ ..|..+.+. +.+|+.-+.|+.||.|+++.-. .+........-+.... -+++|+.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 9999999999887655 778888888 8999999999999999986311 1110011111111111 1345789
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceeEEEec-C-CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134 330 DGKPVLICACNDNTVHLYELPSFMERGRIFS-K-HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~ 393 (394)
+|.+++++......++||.-..|.++..+.+ + .....+.|+|-. .+++- ..|.|++|.....+
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 9995555555567899999999999988877 3 458889999998 55555 88999999876543
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=7.3e-22 Score=167.20 Aligned_cols=219 Identities=21% Similarity=0.324 Sum_probs=186.6
Q ss_pred EEecccCCCeEEEEecC---CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134 168 AKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------- 232 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------- 232 (394)
.+..||+.+|..++|+| +|-+|++++.|+. +-+-+++..+ .+.+|.+.|....+..+ ..+++..|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45689999999999985 8899999999998 6777788877 88999999999988877 44444444
Q ss_pred ----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134 233 ----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI 297 (394)
Q Consensus 233 ----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i 297 (394)
.|..-|.+++|+ .++|++|+.++.+||||++..+ +...+.+|++.|..+.|. ++.|++.+.|++|
T Consensus 88 a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 88 AVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 688899999998 5789999999999999998654 567788999999999998 7789999999999
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEE
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~ 376 (394)
|+||.++++.++.+... .++..+.+ +++|. +| +-...+.|.+||..+...+..+.....|.+...+|+. .++
T Consensus 168 RLWD~rTgt~v~sL~~~-s~VtSlEv----s~dG~-il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLEFN-SPVTSLEV----SQDGR-IL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred EEEEeccCcEEEEEecC-CCCcceee----ccCCC-EE-EEecCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 99999999988887653 33454544 88998 44 4456789999999999999999999999999999998 999
Q ss_pred EEeCCCeEEEEeCCCCC
Q 016134 377 TGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 377 tgs~Dg~I~vWd~~~~~ 393 (394)
+|++|..++.||..+..
T Consensus 241 aGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ecCcceEEEEEeccCCc
Confidence 99999999999998764
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=5.3e-21 Score=182.02 Aligned_cols=309 Identities=20% Similarity=0.210 Sum_probs=221.5
Q ss_pred CCCcccc-cccccccccCCCCCcccccccCCCCCCC---CCCCCCCc----------------cccccCCCCccceeeec
Q 016134 74 SPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTG---PKNSSSAS----------------STVSDESGDKSTSKKTT 133 (394)
Q Consensus 74 ~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~---~~~s~~~~----------------~~~~~~~g~~~~v~~~~ 133 (394)
+..+++. ..+...++|+|+|++||||++.-....+ ...+.+.. +...-..||...|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 4455555 3356688999999999999987544211 00011110 11123459999999999
Q ss_pred cccccccccCCCeecCCCCCeEEEEEcCCC---c----------------------------------------------
Q 016134 134 LKNVCCHWLLGNCVRGDECRFLHSWFCGEG---L---------------------------------------------- 164 (394)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~---------------------------------------------- 164 (394)
|+|.+.-|.+++.|. ++.||...+. +
T Consensus 275 -W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 275 -WHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred -EccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 999998877777766 7888876433 0
Q ss_pred --eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e---eecCCCcE---E-EecCCCCcEEEEEEcC-C-EEEEEec
Q 016134 165 --TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A---WNIESSAE---F-SLDGPVGEVYSMVVAN-E-MLFAGAQ 231 (394)
Q Consensus 165 --~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v---Wd~~~~~~---~-~~~~~~~~v~~l~~~~-~-~l~~~~~ 231 (394)
.+.....||.+.|.+++|+|.|++|+|.|.|.+ | | ..... + +-.-|.-.+.++++-+ + .+++|..
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w--g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW--GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc--ccccceeeecccccccccceeeehccCCceeeeccc
Confidence 011122467888888888888888888888887 3 4 11111 1 2233445566666666 4 3333332
Q ss_pred C-------------------------------------------------------------------------------
Q 016134 232 D------------------------------------------------------------------------------- 232 (394)
Q Consensus 232 ~------------------------------------------------------------------------------- 232 (394)
+
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 2
Q ss_pred ---------------CCCCCEEEEEec--CCeEEEEeCCC-----eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEE
Q 016134 233 ---------------GHTRPVTCLAVG--RSRLCSGSMDN-----TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL 288 (394)
Q Consensus 233 ---------------~h~~~V~~l~~~--~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l 288 (394)
||.-+|.+++.+ ++++|+++... -|++|+..+...++.+.+|+-.|+.+.|+ +.+|
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 899999999998 78999988644 69999999999999999999999999999 8999
Q ss_pred EEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--ceeEE---EecCCc
Q 016134 289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF--MERGR---IFSKHE 363 (394)
Q Consensus 289 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~--~~~~~---~~~~~~ 363 (394)
++.+.|+++.+|..........-+.....+..+.+.+.|+|++. +++|++.|.+|++|..... +.+.. +.....
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~a 666 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLA 666 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCc
Confidence 99999999999987544333222223344566777888999999 7999999999999999887 33333 333678
Q ss_pred EEEEEECCC-----C-EEEEEeCCCeEEEEeCC
Q 016134 364 VRVIEIGPD-----K-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 364 v~~l~~sp~-----~-~l~tgs~Dg~I~vWd~~ 390 (394)
|+++++.|- + .++.|-+.|.|.+|...
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999873 2 77889999999999865
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=182.77 Aligned_cols=132 Identities=6% Similarity=-0.039 Sum_probs=88.2
Q ss_pred CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134 74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR 153 (394)
Q Consensus 74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~ 153 (394)
++++-.+ .++. ...-+.-++-++|++.-.... -..-+.+++++++ |++||.|++++-. +...
T Consensus 41 ~gLa~~p--~Sgl-~aYpAGCvVVlfn~~~~tQ~h------------lvnssRk~~t~vA-fS~~GryvatGEc--G~~p 102 (1080)
T KOG1408|consen 41 NGLASVP--CSGL-CAYPAGCVVVLFNVDSCTQSH------------LVNSSRKPLTCVA-FSQNGRYVATGEC--GRTP 102 (1080)
T ss_pred Ccccccc--cccc-eeeccCcEEEEEcccccchhh------------eecccCcceeEEE-EcCCCcEEEeccc--CCCc
Confidence 3444443 3333 335667888899988544211 1334556999999 9999999997652 1334
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~ 224 (394)
.++||++... ..+.+|..|+-.|+|++|+|.++++++.+.... +||++.+....-......|..++|+.+
T Consensus 103 a~kVw~la~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEd 176 (1080)
T KOG1408|consen 103 ASKVWSLAFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSED 176 (1080)
T ss_pred cceeeeeccc-cchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccC
Confidence 7999999876 578999999999999999999999998876554 355544333322223333444444444
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.3e-22 Score=186.27 Aligned_cols=229 Identities=23% Similarity=0.359 Sum_probs=186.9
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCce-----EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLT-----MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF 207 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~ 207 (394)
..|.++|+. +|+.|+.|++|+...... .+..++.|.+.|++++...+++.|+|+|.|-+ +|+...+...
T Consensus 33 da~~~ryLf----TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 33 DAPNGRYLF----TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred cCCCCceEE----ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 334555555 455566999999853322 47888999999999999999999999999999 5998876421
Q ss_pred EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe-c--CCeEEEEeCCCeEEEEeCCCC--ceeE--------EEc-C
Q 016134 208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV-G--RSRLCSGSMDNTIRVWELDTL--EPVM--------TLN-D 273 (394)
Q Consensus 208 ~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~-~--~~~l~sgs~Dg~V~iwd~~~~--~~~~--------~~~-~ 273 (394)
.+. +...|...|.||++ . ..++|+|+.|+.|.|||+.++ +.+. .+. +
T Consensus 109 c~s-------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 109 CMS-------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred hHh-------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 110 22278889999988 3 678999999999999999976 2222 233 6
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 274 HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 274 h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
+...|++++.. +..|++|+..+.|++||.++.+.+..+.+|...+.++-+ ++||. .+++++.||+|++||+..
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~----~dDGt-~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV----NDDGT-RLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE----cCCCC-eEeecCCCceEEeeeccc
Confidence 78899999988 558999999999999999999999999999887777766 88998 899999999999999999
Q ss_pred CceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 352 FMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 352 ~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.+++.++.. ...|+++..+|+- .+.+|+.||.|..=|+..
T Consensus 245 QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 245 QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 988887654 6679999999887 999999999999888765
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1e-20 Score=188.57 Aligned_cols=261 Identities=20% Similarity=0.236 Sum_probs=196.5
Q ss_pred cCCCCccceeeeccccccccccCCCe--ecCCCCCeEEEEEcCC-----------CceEEEEecccCCCeEEEEecCCCC
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNC--VRGDECRFLHSWFCGE-----------GLTMLAKLEGHEKAVSGIALPLRSD 187 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~--~~g~~~~~i~iWd~~~-----------~~~~~~~l~~h~~~V~~l~~s~~~~ 187 (394)
|..-+...|.++. .+|++.-+|++. .+| .++||+... -.+.+.++..|.+.|+|+.|+|||+
T Consensus 8 wv~H~~~~IfSId-v~pdg~~~aTgGq~~d~----~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 8 WVNHNEKSIFSID-VHPDGVKFATGGQVLDG----GIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred ccccCCeeEEEEE-ecCCceeEecCCccccc----cceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence 5554556788888 899999998876 555 677998641 1245677788999999999999999
Q ss_pred EEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134 188 KLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD 263 (394)
Q Consensus 188 ~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~ 263 (394)
+||+|+.|+. ||...........+..+....+ ...-......+|...|..++|+ +.+|++++.|++|.|||.+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~v---E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNV---ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred eEeeccCcceEEEeeecccCCccccccccccccc---ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 9999999998 6987741111111111110000 0122333444899999999998 7899999999999999999
Q ss_pred CCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC--cceEEEEeeECCCCCcEEEEEe
Q 016134 264 TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDGKPVLICAC 339 (394)
Q Consensus 264 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~~l~sgs 339 (394)
+.+++..+++|.+.|..+.|+ |++|++-+.|++|++|++.+....+.+..+.+. ....-....|+|||+ +|++..
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~n 238 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPN 238 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecchh
Confidence 999999999999999999999 999999999999999998776666665554432 233444567899999 777652
Q ss_pred ----CCCeEEEEECCCCceeEEEe-cCCcEEEEEECCC------C------------EEEEEeCCCeEEEEeCC
Q 016134 340 ----NDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPD------K------------LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 340 ----~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~------~------------~l~tgs~Dg~I~vWd~~ 390 (394)
.-.++.|.+-.+.+.-..+. |..++.+++|+|. . .+|+|+.|++|.||...
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 23578898888877555554 4778999999981 1 57899999999999864
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=163.91 Aligned_cols=243 Identities=14% Similarity=0.186 Sum_probs=187.2
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEc
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFC 160 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~ 160 (394)
++.+++|||.|.+|||||+......+ ....|...|+++. |.++.. ++. ++..||.|-+|+.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg------------~ll~HagsitaL~-F~~~~S~shLl----S~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLG------------ILLSHAGSITALK-FYPPLSKSHLL----SGSDDGHIIIWRV 114 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhc------------ceeccccceEEEE-ecCCcchhhee----eecCCCcEEEEEc
Confidence 56688999999999999999877554 4566777889888 776654 555 4455559999998
Q ss_pred CCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV 238 (394)
Q Consensus 161 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V 238 (394)
.. ++++..+++|++.|+.|+.+|.+++-++.+.|+. +||+-.++.-..... .+...
T Consensus 115 ~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--------------------~~~at- 172 (362)
T KOG0294|consen 115 GS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--------------------KNKAT- 172 (362)
T ss_pred CC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--------------------CCcce-
Confidence 76 4999999999999999999999999999999999 599988875321111 12222
Q ss_pred EEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134 239 TCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
-+.|+ +++++.+..+ .|-||.+.+-.....+.. ...+.++.|. +..|++|..|+.|++||.....+...+..|.
T Consensus 173 -~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~ 249 (362)
T KOG0294|consen 173 -LVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHE 249 (362)
T ss_pred -eeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecch
Confidence 25675 6778777765 589999988776665553 3567888887 8899999999999999999888888888888
Q ss_pred CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-----ceeEEEecCCcEEEEEEC
Q 016134 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-----MERGRIFSKHEVRVIEIG 370 (394)
Q Consensus 316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~~~~v~~l~~s 370 (394)
..+..+. ..-.|++. +|++++.||.|+|||++.. +++..+.....++|+...
T Consensus 250 ~RVK~i~--~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 250 NRVKDIA--SYTNPEHE-YLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred hheeeeE--EEecCCce-EEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 6655443 23477776 9999999999999999876 445555556667777654
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-21 Score=176.27 Aligned_cols=251 Identities=18% Similarity=0.244 Sum_probs=191.4
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEE
Q 016134 88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTML 167 (394)
Q Consensus 88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~ 167 (394)
++-.....+++|++........ ..--+..|.+++ -+|++.|++.+...| .|++|.+.+| .++
T Consensus 55 saq~~rp~l~vw~i~k~~~~~q------------~~v~Pg~v~al~-s~n~G~~l~ag~i~g----~lYlWelssG-~LL 116 (476)
T KOG0646|consen 55 SAQLKRPLLHVWEILKKDQVVQ------------YIVLPGPVHALA-SSNLGYFLLAGTISG----NLYLWELSSG-ILL 116 (476)
T ss_pred eecccCccccccccCchhhhhh------------hcccccceeeee-cCCCceEEEeecccC----cEEEEEeccc-cHH
Confidence 3444477889999875543210 111224678888 999999999888887 8999999999 889
Q ss_pred EEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134 168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG- 244 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~- 244 (394)
..+.+|-.+|++|.|+-|+.+|+|||.||. +|++..--... ..+ . ......+..|+-+|+++...
T Consensus 117 ~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~-~~~--~---------~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD-NDH--S---------VKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc-cCC--C---------ccceeeeccCcceeEEEEecC
Confidence 999999999999999999999999999999 58864321110 000 0 00111334899999999986
Q ss_pred ---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-------------
Q 016134 245 ---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG------------- 306 (394)
Q Consensus 245 ---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~------------- 306 (394)
..+|+++|.|.++++||+..+..+.++. ....+.+++.+ +..++.|+++|.|.+.++....
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 3589999999999999999999988876 56788999988 7889999999999998875422
Q ss_pred ---eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCC
Q 016134 307 ---NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPD 372 (394)
Q Consensus 307 ---~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~ 372 (394)
....+.+|.....+.++. .+-||. +|++|+.||.|.|||+.+.+.+.++. ..++|+.+.+.|=
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLa--is~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLA--ISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccceeeeeccccCCcceeEEE--EecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 233445555533344443 477898 99999999999999999999988888 4888999998653
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.5e-20 Score=162.74 Aligned_cols=231 Identities=16% Similarity=0.233 Sum_probs=171.7
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCC--EEEEEeCCCc--ee
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW 199 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~sgs~Dg~--vW 199 (394)
.|...+++++ +.+.|+++++. |-+|+|||.... ..+..+..|.+.|+++.|.+.-. .|++|+.||. +|
T Consensus 41 aH~~sitavA---Vs~~~~aSGss----DetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 41 AHAGSITALA---VSGPYVASGSS----DETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccceeEEE---ecceeEeccCC----CCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 5667787777 34667775554 449999999887 66788889999999999988664 8999999999 59
Q ss_pred ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134 200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277 (394)
Q Consensus 200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~ 277 (394)
+...-.++. +..+|...|+.|+.+ +.+.++.+.|+.+++||+-+++.-..+.- ...
T Consensus 113 ~~~~W~~~~---------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~ 170 (362)
T KOG0294|consen 113 RVGSWELLK---------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK 170 (362)
T ss_pred EcCCeEEee---------------------eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence 987665542 344777778888886 67888999999999999988876554442 223
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
.+.+.|+ |.+++....+ .|-+|.+.+......+... ....+. .|. ++. .|++|.+|+.|.+||..+..+.
T Consensus 171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~--~~l-~~~-~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCA--TFL-DGS-ELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceee--eec-CCc-eEEEecCCceEEEeccCCCccc
Confidence 3447777 7888877764 6889988765544433322 223333 232 344 7889999999999999987766
Q ss_pred EEEec-CCcEEEEEEC--CCC-EEEEEeCCCeEEEEeCCCC
Q 016134 356 GRIFS-KHEVRVIEIG--PDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 356 ~~~~~-~~~v~~l~~s--p~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.. ...|-.+.+- |++ +|+|++.||.|+|||++.+
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 66554 6778888743 445 9999999999999999876
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.7e-19 Score=166.76 Aligned_cols=264 Identities=15% Similarity=0.083 Sum_probs=178.5
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134 87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM 166 (394)
Q Consensus 87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~ 166 (394)
++|++.|+.+++||++++..... . .++. .+..+. ++|++..+... +..++.|++||..++ +.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~-----------~-~~~~-~~~~l~-~~~dg~~l~~~---~~~~~~v~~~d~~~~-~~ 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRT-----------F-PVGQ-RPRGIT-LSKDGKLLYVC---ASDSDTIQVIDLATG-EV 65 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEE-----------E-ECCC-CCCceE-ECCCCCEEEEE---ECCCCeEEEEECCCC-cE
Confidence 56788899999999988764321 1 1121 244566 88888765322 123558999999876 55
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEE-eCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSG-SRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV 243 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~ 243 (394)
+..+..+.. +..++|+|+++.|+++ +.|+. +||+++.+.+..... ...+.+++|
T Consensus 66 ~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----------------------~~~~~~~~~ 122 (300)
T TIGR03866 66 IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----------------------GVEPEGMAV 122 (300)
T ss_pred EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------CCCcceEEE
Confidence 666665544 5678999999987655 45666 699988765432111 122345666
Q ss_pred c--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134 244 G--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 244 ~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
+ +.++++++.++ .+.+||.++++.+..+.. ...+..+.|+ +++|+ ++..++.|++||+++++.+..+......
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 201 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG 201 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc
Confidence 5 56777777664 577889988877665542 2345677777 66665 4456999999999988766554422111
Q ss_pred ---cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE-eCCCeEEEEeCCCC
Q 016134 318 ---NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG-DGAGMLGVWKLLAK 392 (394)
Q Consensus 318 ---~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg-s~Dg~I~vWd~~~~ 392 (394)
.........++|+++.++++...++.|.+||+.+++....+...+.+.+++|+|++ +|+++ ..++.|++||+.+.
T Consensus 202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 11112233479999954555566778999999988877666666789999999999 77765 56899999999865
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=3.4e-21 Score=177.73 Aligned_cols=222 Identities=19% Similarity=0.300 Sum_probs=166.4
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE------EecCCCCcEEEEEEcCC--EEEEEecC----
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF------SLDGPVGEVYSMVVANE--MLFAGAQD---- 232 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~------~~~~~~~~v~~l~~~~~--~l~~~~~~---- 232 (394)
-..+++|+..|.++++.|.|.+|+||+.|-+ +||++..... .......+|.++.|++. .+++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 4567899999999999999999999999999 5999764432 12334557889999886 44444332
Q ss_pred --------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEc-----CCCCC
Q 016134 233 --------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLN-----DHTDA 277 (394)
Q Consensus 233 --------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~-----~h~~~ 277 (394)
||...++|.+|+ .+.|++++.||++||||+...+ .++.|+ +-.-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 899999999998 4679999999999999997644 233332 23346
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee---eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134 278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL---EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
+++++|+ +++||+|+.||.|.+|+.+..... ..-..|.....+.++ .|+++|+ +|++-+.|+++++||++..
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi--~FS~dg~-~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI--SFSYDGN-YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE--Eeccccc-hhhhccCCCceeeeecccc
Confidence 7889998 889999999999999998654332 222334443344444 4799999 9999999999999999988
Q ss_pred ceeEEEec----CCcEEEEEECCCC-EEEEEeC------CCeEEEEeCCC
Q 016134 353 MERGRIFS----KHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLLA 391 (394)
Q Consensus 353 ~~~~~~~~----~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~~ 391 (394)
+....... ...-+.++|+|+. +|+||.. .|.+.+||-.+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 65433322 4557889999999 8888763 56788887543
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.7e-20 Score=161.35 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=173.1
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecC-----------------
Q 016134 173 HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQD----------------- 232 (394)
Q Consensus 173 h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~----------------- 232 (394)
-+..|++|.|+|.+..|+.++.||+ +||+..........+..++.+.+|.++ .+++|+.|
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 4678999999999999999999999 699998877777788999999999987 88888877
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEA 310 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~ 310 (394)
.|...|.||.+. .+.+++|+.|++|++||.+...++..+. ....|.++...++.|+.|..|..|.+||+++.....+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhh
Confidence 689999999998 6889999999999999999766666655 4458999999999999999999999999998665543
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC----ceeEEEec----------CCcEEEEEECCCC-EE
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF----MERGRIFS----------KHEVRVIEIGPDK-LF 375 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~----------~~~v~~l~~sp~~-~l 375 (394)
.....-..... +++.-|++. =+++++-||.|.+=.+... +....+.. -.+|++|+|+|-. .|
T Consensus 171 ~reS~lkyqtR--~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf 247 (323)
T KOG1036|consen 171 RRESSLKYQTR--CVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF 247 (323)
T ss_pred hccccceeEEE--EEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE
Confidence 33332222233 333456666 4677889999988666554 22222221 2369999999986 99
Q ss_pred EEEeCCCeEEEEeCCCCCC
Q 016134 376 FTGDGAGMLGVWKLLAKPS 394 (394)
Q Consensus 376 ~tgs~Dg~I~vWd~~~~~~ 394 (394)
+||+.||.|.+||+..+++
T Consensus 248 aTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 248 ATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred EecCCCceEEEccCcchhh
Confidence 9999999999999988754
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.9e-21 Score=163.06 Aligned_cols=246 Identities=19% Similarity=0.174 Sum_probs=175.7
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCCeEEEEEc
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECRFLHSWFC 160 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~i~iWd~ 160 (394)
-+.+|+|.|.|++|||..+++....... ..+.||...|..++ |.- -+.+||+.+++| .|.||..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll---------~~L~Gh~GPVwqv~-wahPk~G~iLAScsYDg----kVIiWke 87 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLL---------AELTGHSGPVWKVA-WAHPKFGTILASCSYDG----KVIIWKE 87 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceee---------eEecCCCCCeeEEe-ecccccCcEeeEeecCc----eEEEEec
Confidence 4567899999999999999876642222 26889999999999 554 788899999988 9999998
Q ss_pred CCC-ceEEEEecccCCCeEEEEecCC--CCEEEEEeCCCce--eecCCC-c-EE--EecCCCCcEEEEEEcCCEEEEEec
Q 016134 161 GEG-LTMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGTA--WNIESS-A-EF--SLDGPVGEVYSMVVANEMLFAGAQ 231 (394)
Q Consensus 161 ~~~-~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~v--Wd~~~~-~-~~--~~~~~~~~v~~l~~~~~~l~~~~~ 231 (394)
+++ ++...+...|+..|++++|.|. |-.|+.++.||.| .+.++. . .. ....|.-.|+++.+.|..+-- ..
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g-~~ 166 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG-SL 166 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc-cc
Confidence 766 4567788899999999999884 6789999999993 443332 1 11 234555566666665531100 00
Q ss_pred CCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeC
Q 016134 232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL--EPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFAT 303 (394)
Q Consensus 232 ~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~ 303 (394)
-.|...- .-..|++|+.|..|+||+..++ +..++|++|.+.|..+++. ...|++|++||++.||-.+
T Consensus 167 ~~~~~~~-----~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 167 VDQGPAA-----KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cccCccc-----ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 0000000 0256999999999999998764 3456689999999999998 2479999999999999876
Q ss_pred CC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 304 GR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 304 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
.. +..+....+. -....+.+.|+..|. +|+.++.|+.|.+|.-..
T Consensus 242 ~e~e~wk~tll~~--f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 242 EEYEPWKKTLLEE--FPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CccCccccccccc--CCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 32 1111111122 233455666889998 899999999999997553
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=171.34 Aligned_cols=259 Identities=16% Similarity=0.223 Sum_probs=191.8
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC---ceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCC
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG---LTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDG 196 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg 196 (394)
...++.+.|.+++ +.|.|.-++++++ |-+|+.||...- ++..+.++ .....|.+++|++.+..|+..+...
T Consensus 162 ~l~hgtk~Vsal~-~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 162 QLKHGTKIVSALA-VDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred eccCCceEEEEee-ecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4568889999999 7777776665554 459999998532 12222222 2356799999999998877666554
Q ss_pred c--eeecCCCcEE-------------EecCCCCcEEEEEEcCC---EEEEEecC------------------------CC
Q 016134 197 T--AWNIESSAEF-------------SLDGPVGEVYSMVVANE---MLFAGAQD------------------------GH 234 (394)
Q Consensus 197 ~--vWd~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~~~~~------------------------~h 234 (394)
. |.|-...+.. ...+|...+++.+|+|. .+++++.| +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 4 5665443332 34678889999999997 77888777 33
Q ss_pred CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeE-EEcCCCC--CcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134 235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVM-TLNDHTD--APMSLLCW--DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~-~~~~h~~--~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
.-.++..+|+ +.+||+|..||+|.+||..... +.. .-++|.. .|++|.|+ |++|++-+.|+++++||+++.
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 4567788897 7889999999999999985432 222 2256776 89999999 899999999999999999976
Q ss_pred cee-eEeecccCCcceEEEEeeECCCCCcEEEEEeC------CCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEE
Q 016134 306 GNL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACN------DNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 306 ~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~ 376 (394)
+.. .......... -...++|+|+.+ +|++|.. .+++.+||..+...+..+.- ...|..+.|+|.- .|+
T Consensus 397 kkpL~~~tgL~t~~--~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPF--PGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred ccchhhhcCCCccC--CCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 543 3322222211 122345899999 8888843 57899999999999988876 5678899999986 899
Q ss_pred EEeCCCeEEEE
Q 016134 377 TGDGAGMLGVW 387 (394)
Q Consensus 377 tgs~Dg~I~vW 387 (394)
.|+.||.++|+
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999886
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=6.2e-21 Score=166.14 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=163.5
Q ss_pred EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC------cEEEecCC--CCcEEEEEEcCCEEEEEecCCCC
Q 016134 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS------AEFSLDGP--VGEVYSMVVANEMLFAGAQDGHT 235 (394)
Q Consensus 166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~------~~~~~~~~--~~~v~~l~~~~~~l~~~~~~~h~ 235 (394)
....+..|+.++.+-+|++||.+++||+.|.. |.|++.. +.+..... .-+|.. ++-.|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR-----------TlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR-----------TLYDHV 172 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe-----------ehhhcc
Confidence 34566789999999999999999999999998 4776521 11110000 012222 333799
Q ss_pred CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134 236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPV---MTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL 308 (394)
Q Consensus 236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~ 308 (394)
.+|+++.|+ ...|++|+.|++|++||+..-... +.|+ ...+|.++.|+ |++|+.|....++++||+.+-++.
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 999999999 568999999999999999753322 2222 45689999999 899999999999999999987766
Q ss_pred eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeE
Q 016134 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGML 384 (394)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I 384 (394)
..-.... .+..-..++.|++.++ +.++++.||.|+|||--+++++.++.. ...|.+..|..++ +|++.+.|..|
T Consensus 252 vsanPd~-qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 252 VSANPDD-QHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred eecCccc-ccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 5544222 2222223456899999 999999999999999999888877765 5579999999999 99999999999
Q ss_pred EEEeCCCC
Q 016134 385 GVWKLLAK 392 (394)
Q Consensus 385 ~vWd~~~~ 392 (394)
++|++.+.
T Consensus 330 kLWEi~t~ 337 (430)
T KOG0640|consen 330 KLWEISTG 337 (430)
T ss_pred eeeeecCC
Confidence 99999875
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=4.2e-20 Score=167.38 Aligned_cols=217 Identities=20% Similarity=0.248 Sum_probs=181.7
Q ss_pred eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcC
Q 016134 146 CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVAN 223 (394)
Q Consensus 146 ~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~ 223 (394)
...|+.|..+-++|...+ +.+.+|+||+..|+.+.|+|+...+++++.|.. ||......+..
T Consensus 234 ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------------- 297 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------------- 297 (506)
T ss_pred ceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---------------
Confidence 345666778999999887 889999999999999999999999999999998 68876655432
Q ss_pred CEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC--CCCcEEEEEc--CCEEEEEeCCCcE
Q 016134 224 EMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH--TDAPMSLLCW--DQFLLSCSLDHTI 297 (394)
Q Consensus 224 ~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h--~~~v~~l~~~--~~~l~s~s~Dg~i 297 (394)
....|..+|+.+..+ +++|++++.|++....|++++.++...... .-.+++.+|+ |.+|.+|..|+.|
T Consensus 298 ------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 298 ------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred ------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence 122677888888776 899999999999999999999987766532 2357899999 6788999999999
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-E
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-L 374 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~ 374 (394)
++||+.++..+..+..|..++..+.+ +.+|- +|+++++|+.|++||++..+...++.. ..+|.++.|.+.| +
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~F----sENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISF----SENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEe----ccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence 99999999999999888877666654 77775 999999999999999999887777766 4469999999999 9
Q ss_pred EEEEeCCCeEEEEeC
Q 016134 375 FFTGDGAGMLGVWKL 389 (394)
Q Consensus 375 l~tgs~Dg~I~vWd~ 389 (394)
|+.++.|=+|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999988878877763
No 113
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=177.07 Aligned_cols=290 Identities=15% Similarity=0.174 Sum_probs=190.3
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134 87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM 166 (394)
Q Consensus 87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~ 166 (394)
++-+=.|+-|.+.|...-.+.-.+. ....-.-|..+|-.+. |-|+...|.+++- |.++++||++++ ++
T Consensus 67 LavadE~G~i~l~dt~~~~fr~ee~------~lk~~~aH~nAifDl~-wapge~~lVsasG----DsT~r~Wdvk~s-~l 134 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVFRLEER------QLKKPLAHKNAIFDLK-WAPGESLLVSASG----DSTIRPWDVKTS-RL 134 (720)
T ss_pred EEEecCCCceeeecchhhhcchhhh------hhcccccccceeEeec-cCCCceeEEEccC----Cceeeeeeeccc-ee
Confidence 3445558888888887655431000 0013346777888888 8886666665544 449999999877 56
Q ss_pred EEE--ecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEE---cCC-EEEEE--ecCCC-
Q 016134 167 LAK--LEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVV---ANE-MLFAG--AQDGH- 234 (394)
Q Consensus 167 ~~~--l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~---~~~-~l~~~--~~~~h- 234 (394)
+.. +.||+..|.+++|.|. ...|++|+.||. |||+.-...-.+......++...- .|. .+... ....+
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 555 8999999999999995 567899999999 699875542111111111110000 000 00000 00022
Q ss_pred ---CCCEEEEEec-CCeEEEEeC-CCeEEEEeCCCCceeEEE--------cCC---CCCcEEEEEc--CCEEEEEeCCCc
Q 016134 235 ---TRPVTCLAVG-RSRLCSGSM-DNTIRVWELDTLEPVMTL--------NDH---TDAPMSLLCW--DQFLLSCSLDHT 296 (394)
Q Consensus 235 ---~~~V~~l~~~-~~~l~sgs~-Dg~V~iwd~~~~~~~~~~--------~~h---~~~v~~l~~~--~~~l~s~s~Dg~ 296 (394)
...|+.+.|- +..||+++. |+.|+|||++........ .-| .-.+.++..+ |.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 2346666774 788999888 999999999875543222 122 2245666665 777777777999
Q ss_pred EEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCC
Q 016134 297 IKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPD 372 (394)
Q Consensus 297 i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~ 372 (394)
|.+||++.... +..+..+. .......-+.+|++. +|++|+.|...++|.+.+.+....+.. ...|++++|.|.
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~--~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKL--NSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred EEEEeccccCcCchhhccCcc--cceeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 99999986432 22222222 223333344689999 999999999999999998765544433 557999999998
Q ss_pred C--EEEEEeCCCeEEEEeCCC
Q 016134 373 K--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 373 ~--~l~tgs~Dg~I~vWd~~~ 391 (394)
. -++|+++|-.++||++..
T Consensus 372 ~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred cCCCceeeccCcceEEEeccC
Confidence 7 888999999999999854
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.6e-20 Score=158.29 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=191.6
Q ss_pred CcccCCCCCcccccccccccccCCCCCcccccccCCC-CCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe
Q 016134 68 PKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENP-GYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC 146 (394)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~ 146 (394)
||..+.+.+++++ .....++.+|.|.+||+|+++.. .+.+ + -..-+...|-.+. |+-++.-+++++
T Consensus 25 pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~-k----------a~~~~~~PvL~v~-WsddgskVf~g~ 91 (347)
T KOG0647|consen 25 PPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP-K----------AQQSHDGPVLDVC-WSDDGSKVFSGG 91 (347)
T ss_pred CcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-h----------hhhccCCCeEEEE-EccCCceEEeec
Confidence 4445555566665 12223457888999999999974 4433 2 2445667888888 999998887777
Q ss_pred ecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC--CEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEc
Q 016134 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS--DKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222 (394)
Q Consensus 147 ~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~ 222 (394)
.|+ .+++||+.++ ....+..|.++|..+.|-+.. ..|+|||.|++| ||++....+......
T Consensus 92 ~Dk----~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------- 156 (347)
T KOG0647|consen 92 CDK----QAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------- 156 (347)
T ss_pred cCC----ceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---------
Confidence 666 9999999987 456678899999999997654 489999999995 999987766433222
Q ss_pred CCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeE-EEc-CCCCCcEEEEEc--CCEEEEEeCCCcEE
Q 016134 223 NEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM-TLN-DHTDAPMSLLCW--DQFLLSCSLDHTIK 298 (394)
Q Consensus 223 ~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~ 298 (394)
..+.++..-..+++++..++.|.+|+++.+.... .++ ...-.+.+|++. .+..+.|+-.|.+-
T Consensus 157 -------------eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 157 -------------ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -------------ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 3444444446678888899999999997654321 111 122346777776 56668999999999
Q ss_pred EEEeCCC--ceeeEeecccCCc----ceEEE-EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEEC
Q 016134 299 VWFATGR--GNLEAAYTHKEDN----GVLAL-GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIG 370 (394)
Q Consensus 299 vwd~~~~--~~~~~~~~~~~~~----~~~~~-~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 370 (394)
+..+..+ +.-..+..|.... .+.++ .++|+|... .|++++.||++.+||-.....+.... +..+|++.+|+
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 9988775 4444555555321 13322 246899877 89999999999999988776666644 37899999999
Q ss_pred CCC-EEEEE
Q 016134 371 PDK-LFFTG 378 (394)
Q Consensus 371 p~~-~l~tg 378 (394)
.+| +++.+
T Consensus 303 ~~G~ifaYA 311 (347)
T KOG0647|consen 303 RNGSIFAYA 311 (347)
T ss_pred CCCCEEEEE
Confidence 999 54443
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.3e-22 Score=189.04 Aligned_cols=205 Identities=26% Similarity=0.421 Sum_probs=174.5
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 231 (394)
.+++||. +.+..|...|.++..-..++.+++|+.|.. +|.+.....+. ++
T Consensus 15 ~Lr~~~~-------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------------------S~ 66 (825)
T KOG0267|consen 15 KLRVWDT-------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---------------------SL 66 (825)
T ss_pred ccccccc-------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---------------------ee
Confidence 4566664 344679999999998778899999999987 57765443321 23
Q ss_pred CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134 232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
.+|..+|.+|.|+ ..+|+.|+.+|+|++||+++.+.+++|.+|...+.++.|+ +.++++++.|..+++||++...+
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC 146 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence 4888999999987 5779999999999999999999999999999999999999 78999999999999999998888
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLG 385 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~ 385 (394)
...+..|.....++. |+|+|. +++++++|.+++|||+..++....+. +...+..+.|+|.. ++++|+.|++|+
T Consensus 147 ~~~~~s~~~vv~~l~----lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLR----LSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eeeecCCcceeEEEe----ecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 888777554444443 599999 99999999999999999999998888 47889999999999 999999999999
Q ss_pred EEeCCC
Q 016134 386 VWKLLA 391 (394)
Q Consensus 386 vWd~~~ 391 (394)
+||+++
T Consensus 222 f~dlet 227 (825)
T KOG0267|consen 222 FWDLET 227 (825)
T ss_pred eeccce
Confidence 999973
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=3.7e-20 Score=176.42 Aligned_cols=232 Identities=22% Similarity=0.325 Sum_probs=179.8
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-CCceEEEEecccCCCeEE-EEecC-CCCEEEEEeCCCc
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-EGLTMLAKLEGHEKAVSG-IALPL-RSDKLFSGSRDGT 197 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-~~~~~~~~l~~h~~~V~~-l~~s~-~~~~l~sgs~Dg~ 197 (394)
...||+..|+.+. ..++. + ..+++.|+++++|+-. +.+.....+.+|.+-|.. +++.+ ++-+|++|+.|.+
T Consensus 9 ~l~gH~~DVr~v~-~~~~~-~----i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 9 ELEGHKSDVRAVA-VTDGV-C----IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EeccCccchheeE-ecCCe-E----EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3557777777765 33322 2 3456677799999984 444555778899999988 88875 5567999999998
Q ss_pred --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 016134 198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274 (394)
Q Consensus 198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h 274 (394)
+|.......+. .+.+|...|.++... ...+++||.|.+++||-. +++...+++|
T Consensus 83 i~v~~~~~~~P~~---------------------~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH 139 (745)
T KOG0301|consen 83 IIVFKLSQAEPLY---------------------TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGH 139 (745)
T ss_pred EEEEecCCCCchh---------------------hhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCc
Confidence 47776665542 233888889998865 445899999999999965 5777889999
Q ss_pred CCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 275 TDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 275 ~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
+..|+++... .+.++|||.|.+|++|.- ++.++++.+|...+..+++ -+++. +++++.||.|++|++ +++
T Consensus 140 ~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v----l~~~~--flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 140 TASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV----LDDSH--FLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred chheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEE----ecCCC--eEeecCCceEEEEec-cCc
Confidence 9999999887 679999999999999974 6788888888877666655 45554 788999999999999 455
Q ss_pred eeEEEe-cCCcEEEEEECC-CCEEEEEeCCCeEEEEeCC
Q 016134 354 ERGRIF-SKHEVRVIEIGP-DKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 354 ~~~~~~-~~~~v~~l~~sp-~~~l~tgs~Dg~I~vWd~~ 390 (394)
.+..+. +..-|.+++... ++.++++++|++++||+..
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 555544 466799999444 4599999999999999865
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=6.9e-19 Score=162.27 Aligned_cols=278 Identities=15% Similarity=0.176 Sum_probs=201.9
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce
Q 016134 86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT 165 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~ 165 (394)
.|++.+ ..-+..|+++++.+..... .+..-.++.|.++. |.+.+.. ..|+.+|+|.||+..+. +
T Consensus 215 liit~G-k~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~engdv-----iTgDS~G~i~Iw~~~~~-~ 278 (626)
T KOG2106|consen 215 LIITCG-KGHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLENGDV-----ITGDSGGNILIWSKGTN-R 278 (626)
T ss_pred EEEEeC-CceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCCCCE-----EeecCCceEEEEeCCCc-e
Confidence 444443 3446679998888754221 23334446777777 6665544 56778889999999777 5
Q ss_pred EEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCC--CcEEEecCCCCcEEEEEEcCCEEEEEecC---------
Q 016134 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES--SAEFSLDGPVGEVYSMVVANEMLFAGAQD--------- 232 (394)
Q Consensus 166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~--~~~~~~~~~~~~v~~l~~~~~~l~~~~~~--------- 232 (394)
..++...|.+.|.+++.-.+|.+|- |+.|+.| ||-.- .+...+....+.|..++-....+++|+..
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 5555559999999999999987655 9999994 98322 22235556667777776544334444332
Q ss_pred --------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEE
Q 016134 233 --------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 233 --------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd 301 (394)
+|..+.+.++.+ .+++++++.|+.+++|+ ..+++.+.. -..++.++.|+ ...++.|...|...+.|
T Consensus 358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLD 434 (626)
T ss_pred CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEe
Confidence 788899999987 57899999999999999 455555443 45678899998 33999999999999999
Q ss_pred eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEE
Q 016134 302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~t 377 (394)
.++...+.. ....++..++ .|+|+|. +||.|+.|+.|+||.+........... ..+|+.+.|++|+ +|.+
T Consensus 435 ~e~~~lv~~-~~d~~~ls~v----~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 435 TETQDLVTI-HTDNEQLSVV----RYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred cccceeEEE-EecCCceEEE----EEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 988444333 2223333333 4699999 999999999999999987654443332 5789999999999 9999
Q ss_pred EeCCCeEEEEeC
Q 016134 378 GDGAGMLGVWKL 389 (394)
Q Consensus 378 gs~Dg~I~vWd~ 389 (394)
-+.|-.|..|.-
T Consensus 509 ~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 509 NSGDYEILYWKP 520 (626)
T ss_pred ccCceEEEEEcc
Confidence 999999999943
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=4.6e-20 Score=168.21 Aligned_cols=208 Identities=17% Similarity=0.277 Sum_probs=157.3
Q ss_pred EecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134 169 KLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG- 244 (394)
Q Consensus 169 ~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~- 244 (394)
..-.|.+.|+.+...|.... +++.+..+. |||.......... .. .+.|+..+. +|..+-.+|.|+
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~-~~~Pdl~L~----gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------SG-ECRPDLRLK----GHEKEGYGLSWNR 187 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------cc-cCCCceEEE----eeccccccccccc
Confidence 33469999999999997655 455555554 7998654433110 00 334443222 677777788997
Q ss_pred --CCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCC--CceeeE
Q 016134 245 --RSRLCSGSMDNTIRVWELDTL-------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATG--RGNLEA 310 (394)
Q Consensus 245 --~~~l~sgs~Dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~--~~~~~~ 310 (394)
...|++++.|++|++||+... .+...+.+|...|..++|+ .++|++++.|+.+.|||+|. .+....
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 567999999999999999643 2456678999999999998 78999999999999999994 444455
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE-EEec-CCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG-RIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGV 386 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~v 386 (394)
...|..+..++ .|+|-+..+||+|+.|++|.+||+++..... .+.. ...|..|.|+|.. .|++++.|+.+.|
T Consensus 268 ~~ah~~~vn~~----~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 268 VKAHSAEVNCV----AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred ccccCCceeEE----EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 55555544433 3588888899999999999999999875533 3333 6789999999987 9999999999999
Q ss_pred EeCCC
Q 016134 387 WKLLA 391 (394)
Q Consensus 387 Wd~~~ 391 (394)
||+..
T Consensus 344 WDls~ 348 (422)
T KOG0264|consen 344 WDLSR 348 (422)
T ss_pred Eeccc
Confidence 99874
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-20 Score=177.06 Aligned_cols=230 Identities=19% Similarity=0.261 Sum_probs=183.1
Q ss_pred CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCC-CccceeeeccccccccccCCCeecCCCC
Q 016134 74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESG-DKSTSKKTTLKNVCCHWLLGNCVRGDEC 152 (394)
Q Consensus 74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~~g~~~ 152 (394)
..+.|+. ++..|+.|-.+.++.|||+++.+... ...+ |...|.+++ |+ ......|+.|
T Consensus 221 tSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~------------~~~~~h~~rvg~la-W~------~~~lssGsr~ 279 (484)
T KOG0305|consen 221 TSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR------------TLRGSHASRVGSLA-WN------SSVLSSGSRD 279 (484)
T ss_pred EEEEECC--CCCEEEEeecCCeEEEEehhhccccc------------cccCCcCceeEEEe-cc------CceEEEecCC
Confidence 4566666 88899999999999999999777543 3445 777888888 77 4556778888
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEE
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAG 229 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~ 229 (394)
+.|..+|+......+.++++|...|..++|++|+.+||+|+.|+. |||....+.+ .+.
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~------------------- 340 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT------------------- 340 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-------------------
Confidence 899999998775556669999999999999999999999999999 7998444332 333
Q ss_pred ecCCCCCCEEEEEec---CCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE--eCCCcEEEE
Q 016134 230 AQDGHTRPVTCLAVG---RSRLCSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC--SLDHTIKVW 300 (394)
Q Consensus 230 ~~~~h~~~V~~l~~~---~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~--s~Dg~i~vw 300 (394)
.|..+|.+++|+ .++||+|+ .|+.|++||..+++.+..+. -...|.+|.|+ .+.|+++ -.++.|.||
T Consensus 341 ---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 341 ---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred ---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 566667777765 57788865 69999999999999998876 45789999999 3334443 347799999
Q ss_pred EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
+..+.+.+..+..|...+..+ +.+|||. .+++|+.|.++++|++-..
T Consensus 417 ~~ps~~~~~~l~gH~~RVl~l----a~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 417 KYPSMKLVAELLGHTSRVLYL----ALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eccccceeeeecCCcceeEEE----EECCCCC-EEEEecccCcEEeccccCC
Confidence 999988888888887653333 3599999 8999999999999998764
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.4e-20 Score=167.80 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=169.8
Q ss_pred ccccCCCeecCCCCCeEEEEEcC--CCceEEEEe------------------cccCCCeEEEEecCC-CCEEEEEeCCCc
Q 016134 139 CHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKL------------------EGHEKAVSGIALPLR-SDKLFSGSRDGT 197 (394)
Q Consensus 139 ~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l------------------~~h~~~V~~l~~s~~-~~~l~sgs~Dg~ 197 (394)
++|+|-++.+- .|.|||+. +...+..+| .+|+..|.+|+|+.. .+.|||||.|.+
T Consensus 192 gNyvAiGtmdp----~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 192 GNYVAIGTMDP----EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred cceEEEeccCc----eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 44555555444 89999984 332333333 279999999999874 578999999999
Q ss_pred --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCce-eEEE
Q 016134 198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEP-VMTL 271 (394)
Q Consensus 198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~-~~~~ 271 (394)
+||+.++++..... .|...|.++.|+ +..|++|+.|++|++.|.|.... -..+
T Consensus 268 V~lWD~~~g~p~~s~~---------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSIT---------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred EEEEEcCCCCcceehh---------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 59999999874322 467788888886 67899999999999999985222 2222
Q ss_pred cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEE
Q 016134 272 NDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY 347 (394)
Q Consensus 272 ~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iw 347 (394)
+ ..+.|-.+.|. ...++++..||+|+-+|+|+. +++.++..|..++..+++ ++.-..+|++++.|+.|++|
T Consensus 327 k-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~----n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 327 K-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV----NIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred E-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe----cCCCCcceeeccccceEEEE
Confidence 2 35678888887 567888889999999999986 788888899988877776 55555589999999999999
Q ss_pred ECCCCceeEEEec---CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134 348 ELPSFMERGRIFS---KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 348 d~~~~~~~~~~~~---~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
++..-.......+ -+...|.++.|+- .|+.|+..+.++|||+.+.
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9876544332222 3347788888886 8999999999999998764
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=174.78 Aligned_cols=220 Identities=19% Similarity=0.252 Sum_probs=181.2
Q ss_pred cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC-cEEE-ecCCCCcEEEEEEcCCEEEEEecC--------------
Q 016134 171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS-AEFS-LDGPVGEVYSMVVANEMLFAGAQD-------------- 232 (394)
Q Consensus 171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~-~~~~-~~~~~~~v~~l~~~~~~l~~~~~~-------------- 232 (394)
.+|+...+.|+|.|+|++|++++.|+. +|+.... +... +..+...|.+++.....+++++.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 478999999999999999999999999 4876655 2222 222677888888877788888776
Q ss_pred ----CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134 233 ----GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG 304 (394)
Q Consensus 233 ----~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~ 304 (394)
..+-++.+++++ |++++.||.|-.|++-++.+......+.+|..+|.++.|+ +++||+.+.||.|++||+.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 235578888887 6799999999999999999999999999999999999999 78999999999999999998
Q ss_pred CceeeEeecccCC----cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEE
Q 016134 305 RGNLEAAYTHKED----NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 305 ~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~ 376 (394)
+.....+...... ...++....|+|++. -|+..+.|+.|++|+...++....+.. ...+..++|+|.| |||
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 7766555442221 134455677999977 466677799999999999988888765 3349999999999 999
Q ss_pred EEeCCCeEEEEeCCC
Q 016134 377 TGDGAGMLGVWKLLA 391 (394)
Q Consensus 377 tgs~Dg~I~vWd~~~ 391 (394)
+++.||.|.|||+++
T Consensus 249 As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT 263 (933)
T ss_pred eeccCCcEEEEeccc
Confidence 999999999999984
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2e-19 Score=155.85 Aligned_cols=263 Identities=22% Similarity=0.270 Sum_probs=197.4
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce-----------E---EEEecccCCCeEEEEecC-C
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT-----------M---LAKLEGHEKAVSGIALPL-R 185 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----------~---~~~l~~h~~~V~~l~~s~-~ 185 (394)
+.+-|...|.++.+....++|+.++..+| .|.+||+++... + ...-.+|+-.|.++.|-| |
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadg----si~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADG----SIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCc----cEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 66777788888887888999998777776 899999974420 1 112246889999999988 6
Q ss_pred CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-----EEEEEecC------------------CCCCCEEE
Q 016134 186 SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQD------------------GHTRPVTC 240 (394)
Q Consensus 186 ~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~~------------------~h~~~V~~ 240 (394)
.-.+.+++.|.+ |||..+.+.......++.|++-+++|- .+++|+.+ +|...|.+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred CceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 678889999998 799999998877777888888888775 55555554 89999999
Q ss_pred EEecCC---eEEEEeCCCeEEEEeCCCC-ceeEEE--------------cCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 241 LAVGRS---RLCSGSMDNTIRVWELDTL-EPVMTL--------------NDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 241 l~~~~~---~l~sgs~Dg~V~iwd~~~~-~~~~~~--------------~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
+.|++. .|++|+.||.||+||++.- .|...+ ..|.+.|..++|. +.++++++.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 999843 5999999999999999854 333333 2466788899998 7899999999999999
Q ss_pred EeCCCceeeEeecccCCc--ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEE
Q 016134 301 FATGRGNLEAAYTHKEDN--GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~ 376 (394)
+..+++............ ....+... +.+.. .++---.++.+.++.+-+++.+..+.. ...|.+.++-|+- ...
T Consensus 274 n~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~ 351 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF 351 (397)
T ss_pred ecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence 998876544333211111 11111111 22333 444445568999999999988877765 5568899999887 999
Q ss_pred EEeCCCeEEEEeC
Q 016134 377 TGDGAGMLGVWKL 389 (394)
Q Consensus 377 tgs~Dg~I~vWd~ 389 (394)
+|..|+.|..|-.
T Consensus 352 tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 352 TGDMNGNIYMWSP 364 (397)
T ss_pred ccccCCccccccc
Confidence 9999999999965
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.6e-20 Score=180.77 Aligned_cols=220 Identities=16% Similarity=0.242 Sum_probs=169.3
Q ss_pred cccccCCCeecCCCCCeEEEEEcCC--CceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEE-ecC
Q 016134 138 CCHWLLGNCVRGDECRFLHSWFCGE--GLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFS-LDG 211 (394)
Q Consensus 138 ~~~~~~~~~~~g~~~~~i~iWd~~~--~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~ 211 (394)
..++||+....| .|.+||+.. ..+++..|..|+..|+++.|++ ...+|+|||+||+ +||++..+... +.
T Consensus 99 ~~NlIAT~s~nG----~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~- 173 (839)
T KOG0269|consen 99 YSNLIATCSTNG----VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR- 173 (839)
T ss_pred hhhhheeecCCC----cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-
Confidence 566778777777 999999976 2366778999999999999988 5578999999999 59999877653 22
Q ss_pred CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--C
Q 016134 212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--D 285 (394)
Q Consensus 212 ~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~ 285 (394)
+....|..++|+ ++.|+++...|.+.+||++. .++...+.+|.++|.++.|+ .
T Consensus 174 ---------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 174 ---------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred ---------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence 334556666665 67899999999999999986 45678889999999999999 6
Q ss_pred CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEec--C
Q 016134 286 QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFS--K 361 (394)
Q Consensus 286 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~--~ 361 (394)
.+||||+.|+.|+|||....+.......+.. ..+- .+.|-|+..+.|++++. |-.|+|||++..-....... .
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~--rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVG--RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeEEeec-ceee--eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 7999999999999999986544333222211 1111 33468888878887654 78999999998765554443 5
Q ss_pred CcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134 362 HEVRVIEIGPDK--LFFTGDGAGMLGV 386 (394)
Q Consensus 362 ~~v~~l~~sp~~--~l~tgs~Dg~I~v 386 (394)
..++.++|.... .|.+++.|+.|..
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHH
Confidence 568899998743 9999999998754
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=159.68 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=160.8
Q ss_pred CCCCeEEEEEcC---------------CCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecC
Q 016134 150 DECRFLHSWFCG---------------EGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDG 211 (394)
Q Consensus 150 ~~~~~i~iWd~~---------------~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~ 211 (394)
+..|.|+||++. ...+++.++.+|...=++|+|+|-. ..|+||.--+. +|...++.-..-..
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 345589999975 2256788999999999999999932 34666654444 58777765432111
Q ss_pred CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCcEEEEEc-
Q 016134 212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL---EPVMTLNDHTDAPMSLLCW- 284 (394)
Q Consensus 212 ~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~- 284 (394)
.+-+|+..|..|+|+ .+.|++||.||+|+|||+|.+ .++.+ ++|.+.|+.|.|+
T Consensus 252 ------------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 252 ------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR 312 (440)
T ss_pred ------------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence 111799999999997 578999999999999999987 34444 8899999999999
Q ss_pred -CCEEEEEeCCCcEEEEEeCC---CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-------
Q 016134 285 -DQFLLSCSLDHTIKVWFATG---RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM------- 353 (394)
Q Consensus 285 -~~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~------- 353 (394)
..+||+|+.||+++|||+|+ ++++..+..|..+++.+.+ +|.....|++++.|.+|.|||+.-..
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW----~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~ 388 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW----HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ 388 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe----ccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence 45899999999999999986 4566777778876665544 77666689999999999999985321
Q ss_pred ------------eeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134 354 ------------ERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWK 388 (394)
Q Consensus 354 ------------~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd 388 (394)
++........+..+.|++.- +|++.+.|| +.||.
T Consensus 389 ~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 389 EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11111125568899999975 999999998 44553
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.9e-20 Score=180.35 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=153.9
Q ss_pred CeEEEEecC-CCCEEEEEeCCCc--eeecCCC---cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CC
Q 016134 176 AVSGIALPL-RSDKLFSGSRDGT--AWNIESS---AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RS 246 (394)
Q Consensus 176 ~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~---~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~ 246 (394)
.+.++.|.. +.++|||++..|. +||+... +.+. .+..|+..++++.|+ ++
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~---------------------~f~EH~Rs~~~ldfh~tep~ 147 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT---------------------VFNEHERSANKLDFHSTEPN 147 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh---------------------HhhhhccceeeeeeccCCcc
Confidence 456678864 6789999999999 5999762 2211 122788899999997 78
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEE
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLA 322 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~ 322 (394)
+|++||.||+|++||++..+...++.+....|..|.|+ +..|+++.+.|.+++||+|.... ...+..|..++
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV---- 223 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV---- 223 (839)
T ss_pred EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce----
Confidence 99999999999999999999999999999999999999 78999999999999999997643 34444555433
Q ss_pred EEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEecCCcEEEEEECCCC--EEEEEe--CCCeEEEEeCC
Q 016134 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIFSKHEVRVIEIGPDK--LFFTGD--GAGMLGVWKLL 390 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~sp~~--~l~tgs--~Dg~I~vWd~~ 390 (394)
+++.|+|++. +||+|+.|+.|+|||..+.+ .+..+....+|..|.|-|+. .|++++ .|-.|+|||+.
T Consensus 224 ~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 224 LCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred EEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 3344799887 99999999999999998653 44555567899999999998 888887 57899999986
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.4e-20 Score=165.57 Aligned_cols=220 Identities=18% Similarity=0.296 Sum_probs=176.1
Q ss_pred eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCC-------
Q 016134 165 TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDG------- 233 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~------- 233 (394)
..+..|.||.+.|.+++=+|.. ..++||+.||. |||+....+. .+..|.+.|..+.+....+++++.|.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4567779999999999999976 88999999999 6999998877 78899999999999988677666651
Q ss_pred -----C----CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEE
Q 016134 234 -----H----TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKV 299 (394)
Q Consensus 234 -----h----~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~v 299 (394)
| ...+..|.-+ .+.++|++. .|.|||.+...+++++.--.+.|.++.|+ ...|++|..|+.|.|
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 0 1122223222 467888875 58999999889999998878889999999 468889989999999
Q ss_pred EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEE
Q 016134 300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~ 376 (394)
||+++..++..+..... ...+ +|+|++- .+++|++|..++.||++..+....... ...|..++|+|.| -|+
T Consensus 215 yD~R~~~Pl~KVi~~mR-TN~I----swnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMR-TNTI----CWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred EecccCCccceeeeecc-ccce----ecCcccc-ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 99999988877654322 2223 3689665 788999999999999998755444333 5579999999999 999
Q ss_pred EEeCCCeEEEEeCCCC
Q 016134 377 TGDGAGMLGVWKLLAK 392 (394)
Q Consensus 377 tgs~Dg~I~vWd~~~~ 392 (394)
+||.|.+|+||.++..
T Consensus 289 sgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceEEEeecCCC
Confidence 9999999999998754
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.4e-21 Score=181.81 Aligned_cols=208 Identities=23% Similarity=0.375 Sum_probs=176.7
Q ss_pred ecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 147 ~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~ 224 (394)
.+|+.+..+.+|.+... ..+..|.+|..+|.+|.|+++..+|++|+.+|+ +||++.++.++
T Consensus 44 ~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr---------------- 106 (825)
T KOG0267|consen 44 VTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR---------------- 106 (825)
T ss_pred ccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh----------------
Confidence 35556668889988765 566779999999999999999999999999999 69999887663
Q ss_pred EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
++-+|...+.++.|+ +.++++|+.|..+++||++...|.+.+.+|...|..+.|. |.+++++++|.+++||
T Consensus 107 -----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 107 -----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred -----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 222777888888887 6788999999999999999999999999999999999998 7899999999999999
Q ss_pred EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEE
Q 016134 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTG 378 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tg 378 (394)
|+..++....+..|...+..+. |+|..- ++++|+.|++|++||+++++.+..... ...|.+++|+|++ .+++|
T Consensus 182 d~~agk~~~ef~~~e~~v~sle----~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLE----FHPLEV-LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred cccccccccccccccccccccc----cCchhh-hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 9999988888887776655444 577766 899999999999999999888777665 6679999999999 66666
Q ss_pred eCC
Q 016134 379 DGA 381 (394)
Q Consensus 379 s~D 381 (394)
..+
T Consensus 257 ~q~ 259 (825)
T KOG0267|consen 257 EQI 259 (825)
T ss_pred chh
Confidence 544
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.8e-19 Score=155.57 Aligned_cols=276 Identities=14% Similarity=0.168 Sum_probs=186.4
Q ss_pred CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134 75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF 154 (394)
Q Consensus 75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (394)
...++. ++.+++|.++|++||||++..-....|. ..+.+-..+|+..| . |.|++.-+...|..|+ +
T Consensus 91 ~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr-----~~R~nve~dhpT~V---~-FapDc~s~vv~~~~g~---~ 156 (420)
T KOG2096|consen 91 DVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHR-----CIRQNVEYDHPTRV---V-FAPDCKSVVVSVKRGN---K 156 (420)
T ss_pred eeEEcC--CCceeEEEeCCceEEEEecchhhhhhhh-----HhhccccCCCceEE---E-ECCCcceEEEEEccCC---E
Confidence 344444 9999999999999999999864333332 22233455665444 4 9998888877777776 7
Q ss_pred EEEEEcCC---Cc-----eE---EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEE
Q 016134 155 LHSWFCGE---GL-----TM---LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMV 220 (394)
Q Consensus 155 i~iWd~~~---~~-----~~---~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~ 220 (394)
+++|.... +. .. ...-+-|+-.|..+-....+++|+|++.|.. ||++. |+.+ .+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~-- 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD-- 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc--
Confidence 88887632 10 01 1122346778888888889999999999998 69998 6655 33222211111
Q ss_pred EcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCC---CC-----ceeEEEcCCCCCcEEEEEc--CCEEEE
Q 016134 221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD---TL-----EPVMTLNDHTDAPMSLLCW--DQFLLS 290 (394)
Q Consensus 221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~---~~-----~~~~~~~~h~~~v~~l~~~--~~~l~s 290 (394)
..+.-+|.++++++.--.|++|.+- .| ..+..+++|...|..++|+ ...+++
T Consensus 234 ------------------aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 234 ------------------AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred ------------------eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence 1223347889999998999999862 22 2467789999999999999 578999
Q ss_pred EeCCCcEEEEEeCC----C---ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--C
Q 016134 291 CSLDHTIKVWFATG----R---GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--K 361 (394)
Q Consensus 291 ~s~Dg~i~vwd~~~----~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~ 361 (394)
.+.||+++|||+.- + +.++.............+....+|+|+ .|+. +....|++|..++++....+.. .
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~-s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAV-SFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEe-ecCCceEEEEcccCccchhHHHhhc
Confidence 99999999999742 1 112221111111111122334589999 5654 3456899999999877666554 6
Q ss_pred CcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 362 HEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 362 ~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
..|.+++|+++| +++|+ .|..++++.
T Consensus 374 ~~Is~is~~~~g~~~atc-Gdr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATC-GDRYVRVIR 400 (420)
T ss_pred CceeeEEecCCCcEEeee-cceeeeeec
Confidence 679999999999 66666 567788765
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=164.28 Aligned_cols=252 Identities=19% Similarity=0.308 Sum_probs=199.5
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeCCCce--eecCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSRDGTA--WNIES 203 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~ 203 (394)
..|++++ ++-....+|.+-.+| .|.||++..++-+..++.++. ..|.+|+|. ++.+|+|.+.+|.| ||+.+
T Consensus 26 s~I~slA-~s~kS~~lAvsRt~g----~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 26 SEIVSLA-YSHKSNQLAVSRTDG----NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred cceEEEE-EeccCCceeeeccCC----cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 4778888 666666666655555 999999999988888888875 679999998 67789999999996 99999
Q ss_pred CcEE-EecCCCCcEEEEEEcCC--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134 204 SAEF-SLDGPVGEVYSMVVANE--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR 258 (394)
Q Consensus 204 ~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~ 258 (394)
.+.. ......+.|.+++.+|. .+++|+.+ -.++.|.++.|+ +..+++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 8876 67778889999999886 77788776 345789999998 45699999999999
Q ss_pred EEeCCCCceeEEEcC--------CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134 259 VWELDTLEPVMTLND--------HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP 329 (394)
Q Consensus 259 iwd~~~~~~~~~~~~--------h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 329 (394)
+||..++..++.... ...-|+++.|. ...|++|..-|+|++||...+..++.+..|...+.+++. ++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav----~~ 255 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV----AD 255 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE----cC
Confidence 999999887662221 12235666666 789999999999999999999998888888866555554 56
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCcee-----EEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 330 DGKPVLICACNDNTVHLYELPSFMER-----GRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 330 ~g~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
++. .+++++.|+.|..|........ ....+.+.|.+++..++ .+++|+.|..+.+=...
T Consensus 256 ~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 256 NED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSR 319 (691)
T ss_pred CCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEcccc
Confidence 666 8899999999999988776331 12234778999999888 89999999988765443
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.8e-18 Score=149.57 Aligned_cols=249 Identities=12% Similarity=0.160 Sum_probs=175.8
Q ss_pred ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---CCceEEEEecccCCCeEEEEecC--CCCEEEEEeC
Q 016134 120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---EGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSR 194 (394)
Q Consensus 120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~ 194 (394)
+...||+-.|..+. |.+.|..+|+.+.++ +|+|||.+ ..+.+....+.|.+.|..|.|.+ -|+.+|+++.
T Consensus 7 pi~s~h~DlihdVs-~D~~GRRmAtCSsDq----~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVS-FDFYGRRMATCSSDQ----TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred ccccCCcceeeeee-ecccCceeeeccCCC----cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 35668888899999 999999999888777 99999964 33677888899999999999954 5899999999
Q ss_pred CCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCC----
Q 016134 195 DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDT---- 264 (394)
Q Consensus 195 Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~---- 264 (394)
|++ ||.-+... +..+..+ .+-..+.......|+++.|. |-.|++++.||.||||+.-.
T Consensus 82 Drtv~iWEE~~~~---~~~~~~~---------Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 82 DRTVSIWEEQEKS---EEAHGRR---------WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred CCceeeeeecccc---cccccce---------eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 999 68754211 1111100 11111222456778888886 55799999999999998643
Q ss_pred --CceeEEEc-------CCCCCcEEEEEc-----CCEEEEEeCC-----CcEEEEEeCCCc----eeeEeecccCCcceE
Q 016134 265 --LEPVMTLN-------DHTDAPMSLLCW-----DQFLLSCSLD-----HTIKVWFATGRG----NLEAAYTHKEDNGVL 321 (394)
Q Consensus 265 --~~~~~~~~-------~h~~~v~~l~~~-----~~~l~s~s~D-----g~i~vwd~~~~~----~~~~~~~~~~~~~~~ 321 (394)
..+..+++ .+..+..|+.|+ .++|+.|+.+ +.++||...... .+..+..+..++..+
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 23333333 356677888887 4678887765 488999765543 333444555555444
Q ss_pred EEEeeECCCC---CcEEEEEeCCCeEEEEECCCCc--------------------eeEEEe-cCCcEEEEEECCCC-EEE
Q 016134 322 ALGGLNDPDG---KPVLICACNDNTVHLYELPSFM--------------------ERGRIF-SKHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 322 ~~~~~~s~~g---~~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~-~~~~v~~l~~sp~~-~l~ 376 (394)
++ .|+- -++||+++.|| |+||.+.... .+..+. |..+|+.+.|+-.| .|+
T Consensus 230 ~w----APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 230 SW----APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ee----ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 44 5542 13799999999 9999987311 111111 25579999999999 999
Q ss_pred EEeCCCeEEEEeCC
Q 016134 377 TGDGAGMLGVWKLL 390 (394)
Q Consensus 377 tgs~Dg~I~vWd~~ 390 (394)
+.+.||+||+|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999764
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.2e-18 Score=148.61 Aligned_cols=245 Identities=13% Similarity=0.180 Sum_probs=192.0
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESS 204 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~ 204 (394)
-.|+++. |++....|..++.|| ++++||.... .+...+ .|..++.+++|.+ ...+++|+.||.| +|+.++
T Consensus 14 d~IS~v~-f~~~~~~LLvssWDg----slrlYdv~~~-~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 14 DGISSVK-FSPSSSDLLVSSWDG----SLRLYDVPAN-SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hceeeEE-EcCcCCcEEEEeccC----cEEEEeccch-hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 4788888 889888888888888 9999999776 444443 5999999999976 5689999999994 999999
Q ss_pred cEEEecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC
Q 016134 205 AEFSLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL 265 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~ 265 (394)
....+..|...|.+|.+.+. .+++|++| .....|.++...++.|++|..|..|.+||+++.
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 99999999999999999954 89999988 345689999999999999999999999999986
Q ss_pred ceeEEEc--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC----ceeeEeecccCCcc----eE-EEEeeECCCCC
Q 016134 266 EPVMTLN--DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR----GNLEAAYTHKEDNG----VL-ALGGLNDPDGK 332 (394)
Q Consensus 266 ~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~----~~~~~~~~~~~~~~----~~-~~~~~~s~~g~ 332 (394)
....+.. .-...+.++++. +.-++.++-||+|.+=.+... .....+..|..... +. .-+..|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 5433221 233456777776 466788899999988776654 23334444432211 11 11235788866
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134 333 PVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG 380 (394)
Q Consensus 333 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~ 380 (394)
.|+||+.||.|.+||+.+.+.+..+.. +..|.+++|+.+| .||+++.
T Consensus 246 -tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 -TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 899999999999999999888877766 5679999999999 8888874
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=2.2e-19 Score=165.33 Aligned_cols=265 Identities=18% Similarity=0.237 Sum_probs=199.8
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-c
Q 016134 86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-L 164 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~ 164 (394)
+.+..++.+-|||||+..+.. +...+... -.-...-|++.. ..|+++-|..+... .++.|||+... .
T Consensus 432 rhVyTgGkgcVKVWdis~pg~---k~PvsqLd----cl~rdnyiRSck-L~pdgrtLivGGea----stlsiWDLAapTp 499 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGN---KSPVSQLD----CLNRDNYIRSCK-LLPDGRTLIVGGEA----STLSIWDLAAPTP 499 (705)
T ss_pred ceeEecCCCeEEEeeccCCCC---CCcccccc----ccCcccceeeeE-ecCCCceEEecccc----ceeeeeeccCCCc
Confidence 334456678899999987632 11111100 011123566666 66666666554443 38999999654 2
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
....++....-...+++.+||.+..+++..||. |||+.+...++ .+.+|++.+.||.
T Consensus 500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---------------------qfqGhtDGascId 558 (705)
T KOG0639|consen 500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---------------------QFQGHTDGASCID 558 (705)
T ss_pred chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---------------------cccCCCCCceeEE
Confidence 444555555567888999999999999999999 69998877663 3348888899999
Q ss_pred ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
++ |..|.+|+-|.+||.||+++++.++... ..+.|.++.+. ++.|+.|-+.+.+-|......+.. ..|.+..
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky---qlhlheS 634 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHLHES 634 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---eeccccc
Confidence 87 8899999999999999999988766543 45788898887 889999999999888877654332 2233334
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.++++ .|.+.|+ ++++.+.|+-+..|...-+..+.+......|.++.++.|+ +|+||+.|..-.||.+.
T Consensus 635 cVLSl--KFa~cGk-wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 635 CVLSL--KFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred EEEEE--EecccCc-eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 44444 5889999 9999999999999999999999888888899999999999 99999999999888763
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=8.5e-19 Score=151.94 Aligned_cols=212 Identities=15% Similarity=0.269 Sum_probs=161.6
Q ss_pred ecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134 170 LEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-- 244 (394)
Q Consensus 170 l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-- 244 (394)
...|.+.|+++...+ .|+++++|+.||. |||++.....+..+....-.++ +..-..++|.-.|.++.|-
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~------v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI------VAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee------ccccCCccceeeeeeeEEeee
Confidence 356889999999987 7899999999999 6999876533211111000010 1111234888899999985
Q ss_pred -CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 245 -RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 245 -~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
..++.+++.|.+++|||..+.+....|+ -.+.|++-+++ .-++|+|..|-+|++.|+..+.....+.+|...+
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 5789999999999999999998887776 34566666555 4578888889999999999999999999888653
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEE---------------ecCCcEEEEEECCCC-EEEEEeCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRI---------------FSKHEVRVIEIGPDK-LFFTGDGA 381 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~---------------~~~~~v~~l~~sp~~-~l~tgs~D 381 (394)
+++ .|+|..+.+|++|+.||.|++||++.- .+...+ .+.+.|+.++|..++ ++++++.|
T Consensus 192 --laV--~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 192 --LAV--EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred --EEE--EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 433 368888889999999999999999864 222211 124569999999999 99999999
Q ss_pred CeEEEEeCCCC
Q 016134 382 GMLGVWKLLAK 392 (394)
Q Consensus 382 g~I~vWd~~~~ 392 (394)
..+++|+....
T Consensus 268 ~r~r~wn~~~G 278 (397)
T KOG4283|consen 268 DRIRVWNMESG 278 (397)
T ss_pred cceEEeecccC
Confidence 99999997654
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=9.1e-19 Score=156.32 Aligned_cols=216 Identities=22% Similarity=0.308 Sum_probs=155.0
Q ss_pred EEecccCCCeEEEEecCCC--CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134 168 AKLEGHEKAVSGIALPLRS--DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV 243 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~ 243 (394)
....+|.+.|+.+..++-+ .+.++-+..|. ||++...-.. +......+....+.| ++ +..+|...=..|+|
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~-l~~~~~~~~~s~~~P--l~--t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA-LSEPGLEVKDSEFRP--LF--TFNGHKGEGYGLDW 219 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh-hcCccccccccccCc--eE--EecccCccceeeec
Confidence 3445788889988887754 45555566666 7997543211 111111111111111 11 23378888899999
Q ss_pred cC---CeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeE--ee
Q 016134 244 GR---SRLCSGSMDNTIRVWELDTLEP---VMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEA--AY 312 (394)
Q Consensus 244 ~~---~~l~sgs~Dg~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~ 312 (394)
++ ..|++|..-+.|++|...++.= ...|.+|+..|-.++|+ ...|++||.|++|+|||+|.+..... ..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 84 5688998889999999887652 24466799999999997 67999999999999999998733222 24
Q ss_pred cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc---eeEEEe-cCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM---ERGRIF-SKHEVRVIEIGPDK--LFFTGDGAGMLGV 386 (394)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~---~~~~~~-~~~~v~~l~~sp~~--~l~tgs~Dg~I~v 386 (394)
.|...+.++++ +.... +||+|+.||+++|||++..+ ++..+. |..+|++|.|+|.. .|++++.|.+|.|
T Consensus 300 Ah~sDVNVISW----nr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISW----NRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred ccCCceeeEEc----cCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 45555555544 66666 99999999999999999764 444444 48899999999976 9999999999999
Q ss_pred EeCCCCC
Q 016134 387 WKLLAKP 393 (394)
Q Consensus 387 Wd~~~~~ 393 (394)
||+..++
T Consensus 375 WDlsvE~ 381 (440)
T KOG0302|consen 375 WDLSVEA 381 (440)
T ss_pred EEeeccC
Confidence 9998654
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.9e-19 Score=158.07 Aligned_cols=227 Identities=19% Similarity=0.280 Sum_probs=172.6
Q ss_pred cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcE
Q 016134 140 HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEV 216 (394)
Q Consensus 140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v 216 (394)
-++|.+..-| .|+|.|+.++ ++...+.+|..+|+.|.|.|+. ++|+++|.|.. +|++++..++.+
T Consensus 106 p~la~~G~~G----vIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V------- 173 (385)
T KOG1034|consen 106 PFLAAGGYLG----VIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV------- 173 (385)
T ss_pred eeEEeeccee----EEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE-------
Confidence 3444444444 9999999887 8899999999999999999964 78999999999 699999998743
Q ss_pred EEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc------ee-------------------E
Q 016134 217 YSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE------PV-------------------M 269 (394)
Q Consensus 217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~------~~-------------------~ 269 (394)
.|+..+|...|.++.|+ +.+|++++.|.++++|++...+ +. .
T Consensus 174 -----------fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 174 -----------FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred -----------ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 34566999999999998 7899999999999999997311 00 0
Q ss_pred ---EEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEe-CCCceeeEe---------ec-ccCC-cceEEEEeeECCCCCcE
Q 016134 270 ---TLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFA-TGRGNLEAA---------YT-HKED-NGVLALGGLNDPDGKPV 334 (394)
Q Consensus 270 ---~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~-~~~~~~~~~---------~~-~~~~-~~~~~~~~~~s~~g~~~ 334 (394)
+-.-|...|-|+.|.|+++++=+-++.|..|.. .-.+.+... .. ..-+ ..+.-+...|+|-++ +
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~ 321 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M 321 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence 113477788888888999999999999999976 211111111 11 1111 122333445788888 8
Q ss_pred EEEEeCCCeEEEEECCCCcee--EEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 335 LICACNDNTVHLYELPSFMER--GRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~~--~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
||.|...|.|.+||++..++. .++.+ ...|+..+|+.|+ .|+...+|+.|.-||.-
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999999987653 22322 5569999999999 89999999999999864
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=5e-17 Score=150.13 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=189.1
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCC----CCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeC
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDE----CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSR 194 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~----~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~ 194 (394)
...||...|.+++ .+|+.-.++++-..|-. --.+||||..+- .-++.+-.-...|.+++|++ .|.+|+....
T Consensus 99 ~y~GH~ddikc~~-vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L-~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 99 HYLGHNDDIKCMA-VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL-STLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccCCCCceEEEe-ecCCceeeccCcccccCCCcCCCeeeecccccc-eeeeeeccccccceeeeecccCCCceEEEecC
Confidence 4568888999999 99999999977665522 236999997664 55667767788999999987 3455555544
Q ss_pred CCc----eeecCCCcEE-EecCCCCcEEEEEEcCC---EEEEEecC---------------------CCCCCEEEEEec-
Q 016134 195 DGT----AWNIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQD---------------------GHTRPVTCLAVG- 244 (394)
Q Consensus 195 Dg~----vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~~---------------------~h~~~V~~l~~~- 244 (394)
... |||++.+... ........|....|+|. .+++.+.. .....|.|++|.
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 333 7999987766 44555666778888876 44444332 123679999998
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCc-----------eeeEee
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRG-----------NLEAAY 312 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~-----------~~~~~~ 312 (394)
+.-+++|..+|.|.||+..+.+..++...|.+.|.+++.. +..|++|+.|+.|..||-.-.+ .++.+.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 6779999999999999999888877777999999999988 6678889999999999822110 011111
Q ss_pred cccCC-------------------------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-----------------
Q 016134 313 THKED-------------------------NGVLALGGLNDPDGKPVLICACNDNTVHLYELP----------------- 350 (394)
Q Consensus 313 ~~~~~-------------------------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~----------------- 350 (394)
..... ...--+-.+.+|+.. ++++++.|+.+++|+-.
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~f 415 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADF 415 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeec
Confidence 00000 000001122355555 78888888888888721
Q ss_pred ---------------------CCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCCC
Q 016134 351 ---------------------SFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKPS 394 (394)
Q Consensus 351 ---------------------~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~~ 394 (394)
+...+.......++++++|+|+| +||.|+.|+.|.||.++..++
T Consensus 416 hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 416 HPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred cCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 11111111125579999999999 999999999999999887653
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3.5e-18 Score=162.96 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=195.0
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--
Q 016134 87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-- 164 (394)
Q Consensus 87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-- 164 (394)
++-|+.++.++++--.+..+.... -..||.-.|++++ |+.-+. --....+++.|.+||||.+.-+.
T Consensus 162 la~Ggs~~~v~~~s~~~d~f~~v~----------el~GH~DWIrsl~-f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSADSFARVA----------ELEGHTDWIRSLA-FARLGG-DDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred EEecCcceEEEEeccCCcceeEEE----------Eeeccchhhhhhh-hhccCC-CcEEEEecCCceEEEEEEEEecCCc
Confidence 345666777777766655543222 4668998999998 654322 00113466778899999873221
Q ss_pred ------------------eEE----------EEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE--------
Q 016134 165 ------------------TML----------AKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE-------- 206 (394)
Q Consensus 165 ------------------~~~----------~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~-------- 206 (394)
... ..+.||.+-|+++.|+|++..|++++.|.+ ||.-++..-
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe
Confidence 111 223599999999999999999999999998 354333210
Q ss_pred ---------------------------------------------EEecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134 207 ---------------------------------------------FSLDGPVGEVYSMVVANE--MLFAGAQD------- 232 (394)
Q Consensus 207 ---------------------------------------------~~~~~~~~~v~~l~~~~~--~l~~~~~~------- 232 (394)
..+.+|.+.|..++|.|. +|++.+.|
T Consensus 310 Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 012345556666666654 55555555
Q ss_pred ---------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC-------------------------------
Q 016134 233 ---------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT------------------------------- 264 (394)
Q Consensus 233 ---------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~------------------------------- 264 (394)
-|.-.++|+++- .-.+++|...+.+|+|+...
T Consensus 390 ~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGL 469 (764)
T KOG1063|consen 390 RWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGL 469 (764)
T ss_pred ccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccc
Confidence 244455666653 23466666666666666520
Q ss_pred ------------C---------------------------------ceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---
Q 016134 265 ------------L---------------------------------EPVMTLNDHTDAPMSLLCW--DQFLLSCSLD--- 294 (394)
Q Consensus 265 ------------~---------------------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D--- 294 (394)
+ -.++.+.+|...|++++.+ ++++|+++..
T Consensus 470 SnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 470 SNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK 549 (764)
T ss_pred cCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence 0 0122345678889999998 8899998854
Q ss_pred --CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-----ecCCcEEEE
Q 016134 295 --HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-----FSKHEVRVI 367 (394)
Q Consensus 295 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~~~v~~l 367 (394)
..|++|+..+....+.+..|.-.++.+ .|+||++ +|++.+.|+++.+|..........- .|..-|+.+
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l----~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRL----AFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEE----EECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 469999999888888777776444333 4699999 8999999999999998654221111 123349999
Q ss_pred EECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 368 EIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 368 ~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.|+|++ +++|+|.|.+|++|.....
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccCcccceeEEecCCceEEEEeccCc
Confidence 999999 8999999999999998765
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=2.3e-18 Score=154.59 Aligned_cols=207 Identities=21% Similarity=0.306 Sum_probs=165.1
Q ss_pred EEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134 168 AKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG 244 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~ 244 (394)
-.+.||+++|.+++|+| +...|||||.|.+ ||++..+.... .+..+|..+ .+|...|--++|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--~ltepvv~L------------~gH~rrVg~V~wH 140 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--DLTEPVVEL------------YGHQRRVGLVQWH 140 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--CcccceEEE------------eecceeEEEEeec
Confidence 34578999999999999 5678999999998 69997765432 111223222 2899999999998
Q ss_pred ---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134 245 ---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319 (394)
Q Consensus 245 ---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 319 (394)
.+.|++++.|.+|.|||+.+++.+.++. |.+.|+++.|+ |.+|++.+.|..|||||.++++.+..-..|.....
T Consensus 141 PtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~ 219 (472)
T KOG0303|consen 141 PTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP 219 (472)
T ss_pred ccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc
Confidence 5889999999999999999999999988 99999999999 89999999999999999999998888777766555
Q ss_pred eEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCceeE---EEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 320 VLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFMERG---RIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 320 ~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~~~~---~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
..++ |-.++. ++.+|- .+..+-+||..+.+... .+.....|.---+.+|. ..++|=.|+.|+-|++..
T Consensus 220 ~Rai---fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 220 ARAI---FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ceeE---EeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 4444 567887 666663 47889999987765443 33336667777788887 667777999999999987
Q ss_pred CC
Q 016134 392 KP 393 (394)
Q Consensus 392 ~~ 393 (394)
++
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=158.73 Aligned_cols=207 Identities=20% Similarity=0.283 Sum_probs=153.8
Q ss_pred eEEEEecC-------CCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134 177 VSGIALPL-------RSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV 243 (394)
Q Consensus 177 V~~l~~s~-------~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~ 243 (394)
-.|++|.. .|+++|.|..|.. |||+.-...+ .+-....++... . .--.-+..+|+..|.+|.|
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k-~---~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK-K---GKRSNSASGHTDAVLALSW 251 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh-h---cccccccccchHHHHHHHh
Confidence 35666632 3689999999998 6998643322 111000000000 0 0000012279999999999
Q ss_pred c---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134 244 G---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 244 ~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
+ .+.|++||.|.+|++||+.++++..++..|...|.++.|+ +.+|++|+.|++|.+.|.|..............
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence 8 5789999999999999999999999999999999999999 789999999999999999964444333333333
Q ss_pred cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
+..+. |+|.....++++..||+|+-+|+++. +++.++.. ..+|.+|++++.- +++|++.|+.|++|++..
T Consensus 332 VEkv~----w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 332 VEKVA----WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eEEEE----ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 44444 46666668899999999999999987 55655554 7789999999876 999999999999999864
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-18 Score=157.72 Aligned_cols=259 Identities=15% Similarity=0.160 Sum_probs=188.0
Q ss_pred CCCCCcccccccCCCC----CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC--
Q 016134 90 GSEDRIPHVRNRENPG----YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-- 163 (394)
Q Consensus 90 ~s~d~~~~~w~~~~~~----~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-- 163 (394)
+|...++++||...-. +..++ -.. .+.++. |+...+ +..+... .|..+++|.-...
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t----------~~p----g~~s~~-w~~~n~-lvvas~~--gdk~~~~~~K~g~~~ 69 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQT----------AEP----GDFSFN-WQRRNF-LVVASMA--GDKVMRIKEKDGKTP 69 (673)
T ss_pred eccCCceEEeecccccCccccccCC----------CCC----cceeee-ccccce-EEEeecC--CceeEEEecccCCCC
Confidence 4556678999987543 22221 111 255555 655444 4434443 4568999986433
Q ss_pred -ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134 164 -LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC 240 (394)
Q Consensus 164 -~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~ 240 (394)
...+..+.+. .-.|++......++++|+..+. |||++...+.+ ...+|...|++
T Consensus 70 ~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---------------------~lkdh~stvt~ 126 (673)
T KOG4378|consen 70 EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---------------------FLKDHQSTVTY 126 (673)
T ss_pred ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---------------------hccCCcceeEE
Confidence 2223333332 4455555555689999999998 79999655443 12278888999
Q ss_pred EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeec-
Q 016134 241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-APMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT- 313 (394)
Q Consensus 241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~- 313 (394)
+.++ ..+||+++..|.|.|..+.++....+|....+ .|.-+.|+ ..+|.+++.+|.|.+||+....++..+..
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~ 206 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA 206 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh
Confidence 9887 68999999999999999999888777775434 44577787 34788899999999999987655544432
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|..+...+ +|+|....+|++.+.|..|.+||.+.......+...++...++|+++| +|+.|...|.|..||+...
T Consensus 207 HsAP~~gi----cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 207 HSAPCRGI----CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ccCCcCcc----eecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 43333333 468888879999999999999999998888888889999999999999 9999999999999999876
Q ss_pred C
Q 016134 393 P 393 (394)
Q Consensus 393 ~ 393 (394)
+
T Consensus 283 k 283 (673)
T KOG4378|consen 283 K 283 (673)
T ss_pred C
Confidence 5
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=6.4e-18 Score=154.34 Aligned_cols=261 Identities=19% Similarity=0.236 Sum_probs=185.1
Q ss_pred CCCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEcC---CCceEEEEecccCCCeEEEEecC-CCCEEEEEeCC
Q 016134 122 ESGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFCG---EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRD 195 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~D 195 (394)
.+-+.+.|++++ |.|+.. .+| .|++.|.|-+||+. ....-+..+..|..+|.+|.|+| +-..+++.|.|
T Consensus 182 ~kv~~~Rit~l~-fHPt~~~~lva----~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 182 AKVTDRRITSLA-FHPTENRKLVA----VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eEecccceEEEE-ecccCcceEEE----EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 334557889998 999766 344 45666699999994 33355778889999999999999 45789999999
Q ss_pred Cce--eecCCCcEE---EecCCCCcEEEEEEcCC---EEEEEecC------------------CCCCCEEEEEec---CC
Q 016134 196 GTA--WNIESSAEF---SLDGPVGEVYSMVVANE---MLFAGAQD------------------GHTRPVTCLAVG---RS 246 (394)
Q Consensus 196 g~v--Wd~~~~~~~---~~~~~~~~v~~l~~~~~---~l~~~~~~------------------~h~~~V~~l~~~---~~ 246 (394)
|+| =|++.+..- .+......+..+.|+.+ .++....+ -|...|..|+++ +.
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 994 555544322 22223334445555544 22222222 578899999998 57
Q ss_pred eEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC----CCceeeEeecccC
Q 016134 247 RLCSGSMDNTIRVWELDTLEP----VMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT----GRGNLEAAYTHKE 316 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~----~~~~~~~~~~~~~ 316 (394)
+|++++.|++++|||++.... +.....|...|.+..|+ +..|++.+.|..|+|||.. ...+...+. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 899999999999999986332 23334699999999999 4559999999999999983 333333333 332
Q ss_pred C--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEE-EEECCCC--EEEEEeCCCeEEEEeC
Q 016134 317 D--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRV-IEIGPDK--LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 317 ~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~-l~~sp~~--~l~tgs~Dg~I~vWd~ 389 (394)
. .....+...|.|+.. ++++|-.-..|-|||-..++.+..+.. ...|.+ ..|+|-+ +++-++..|.|.||--
T Consensus 416 ~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 2 234455667899887 999999999999999999887777655 224544 4799987 4555557788888854
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=158.45 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=191.6
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~ 204 (394)
+.|..++ +.|+|..+..+.-+ .+.++|.+++ .+++++++|++.|++++|+.||++++||+.|.. ||+-+-.
T Consensus 13 hci~d~a-fkPDGsqL~lAAg~-----rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 13 HCINDIA-FKPDGTQLILAAGS-----RLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred cchheeE-ECCCCceEEEecCC-----EEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 3777888 99998887543322 7999999988 889999999999999999999999999999999 5986544
Q ss_pred cEEEecCCCCcEEEEEEcCC--EEEEEecC---------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC
Q 016134 205 AEFSLDGPVGEVYSMVVANE--MLFAGAQD---------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL 265 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~~---------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~ 265 (394)
..+ ...|...|.+|.|+|- .+++++.. .....|.+.+|. |.+|+.|-.||+|.|-+- ++
T Consensus 86 G~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g 163 (1081)
T KOG1538|consen 86 GIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NG 163 (1081)
T ss_pred cee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence 443 3578889999999996 66666655 234567788886 889999999999999874 34
Q ss_pred ceeEEEc---CCCCCcEEEEEc-------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEE
Q 016134 266 EPVMTLN---DHTDAPMSLLCW-------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335 (394)
Q Consensus 266 ~~~~~~~---~h~~~v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l 335 (394)
++...++ +..++|.+++|+ .+.+++.....++.++.+. ++.+..-........ +..+-++|+ ++
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~----CisYf~NGE-y~ 237 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPC----CISYFTNGE-YI 237 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCch----hheeccCCc-EE
Confidence 5444443 467899999998 3578888888999998875 343333222222222 334578999 77
Q ss_pred EEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 336 ICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 336 ~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+.|+.|+.+++|- +.+-.+.++.. .++|+.++..|++ +++.|+.||+|-.|++-
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 7888999999995 44656666655 7889999999999 99999999999988864
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=140.91 Aligned_cols=239 Identities=16% Similarity=0.156 Sum_probs=169.6
Q ss_pred eeeeccccccccccCCCeecCCCCCeEEEEEcC---------CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce-
Q 016134 129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---------EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA- 198 (394)
Q Consensus 129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v- 198 (394)
|-+-+ ++|+++|++.+..+| .|-+..++ .+..++...++|.++|+.++|. ..+|++|+. |.|
T Consensus 13 vf~qa-~sp~~~~l~agn~~G----~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 13 VFAQA-ISPSKQYLFAGNLFG----DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHh-hCCcceEEEEecCCC----eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEE
Confidence 33334 899999988777776 78888764 3345667779999999999997 456777765 775
Q ss_pred -eecCCCcE----EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134 199 -WNIESSAE----FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL 271 (394)
Q Consensus 199 -Wd~~~~~~----~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 271 (394)
|.+..... ..+.....+... .-..-.+|+++-.+ .+-++.++.|+.++-||+++++..+++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~------------~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQV------------DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred EeeehhhhhhccchhhhhhcCcccc------------CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 55543222 111110000000 00123467777766 455666668999999999999999999
Q ss_pred cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE----EEEeeECCCCCcEEEEEeCCCeEE
Q 016134 272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL----ALGGLNDPDGKPVLICACNDNTVH 345 (394)
Q Consensus 272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~l~sgs~dg~I~ 345 (394)
++|++.|.++.-- ...+++|++||++|+||+++++++..+...+.+.... .+..+..-+.. +|++|+ ...+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCcee
Confidence 9999999999874 6789999999999999999999888876544331110 11111233444 888776 46799
Q ss_pred EEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 346 LYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 346 iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
+|++++.+....+.-...+..+.|..| .++++++.+.|.-|.+.
T Consensus 231 lwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeec
Confidence 999999999998888889999999866 77777777778877654
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=152.37 Aligned_cols=253 Identities=14% Similarity=0.179 Sum_probs=186.9
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecC
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIE 202 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~ 202 (394)
..|+++. |.|....+.++..++ .++||.+... ...++.+.--.-+|.+.+|.|+|+ .+++++.... .||++
T Consensus 214 ~~I~sv~-FHp~~plllvaG~d~----~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQ-FHPTAPLLLVAGLDG----TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEE-ecCCCceEEEecCCC----cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 6889999 999888888777776 9999998533 145666666788999999999998 8888887776 59999
Q ss_pred CCcEEEecC---CC-CcEEEEEEcCC--EEEEEecCC-----------------CCCCEEEEEec--CCeEEEEeCCCeE
Q 016134 203 SSAEFSLDG---PV-GEVYSMVVANE--MLFAGAQDG-----------------HTRPVTCLAVG--RSRLCSGSMDNTI 257 (394)
Q Consensus 203 ~~~~~~~~~---~~-~~v~~l~~~~~--~l~~~~~~~-----------------h~~~V~~l~~~--~~~l~sgs~Dg~V 257 (394)
+.+...+.. +. ..+....++++ +++..+..+ ..+.|..+.|+ +..|++++.+|.|
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceE
Confidence 988764432 22 23445555665 555554442 24677788886 6778888889999
Q ss_pred EEEeCCCCceeEEEcCCCCCc--EEEEEc--CCEEEEEeCCCcEEEEEeCC------CceeeEeecccCCcceEEEEeeE
Q 016134 258 RVWELDTLEPVMTLNDHTDAP--MSLLCW--DQFLLSCSLDHTIKVWFATG------RGNLEAAYTHKEDNGVLALGGLN 327 (394)
Q Consensus 258 ~iwd~~~~~~~~~~~~h~~~v--~~l~~~--~~~l~s~s~Dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~ 327 (394)
.+||++...+++.+... +.| ++++.+ +.+||+|+..|.|.|||..+ ++++..+......+. ...|
T Consensus 369 ~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It----sl~F 443 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT----SLQF 443 (514)
T ss_pred EEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee----eeee
Confidence 99999999999998743 333 344433 89999999999999999653 233333322222222 2347
Q ss_pred CCCCCcEEEEEe--CCCeEEEEECCCCceeEEEec----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 328 DPDGKPVLICAC--NDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 328 s~~g~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+++.+ +|+.++ .+..+++-.+++......++. -+.|+|++|+|.+ +|+.|..+|+|.+|.+.
T Consensus 444 n~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Ccchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99998 776665 467899999998766655554 3469999999987 99999999999999985
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=8.8e-18 Score=158.73 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=117.5
Q ss_pred CCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEE
Q 016134 235 TRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 235 ~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd 301 (394)
...|+.+.|+ ...|++++.||.|+||.+..+ ++...+..|...|+++.|+ .+.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 4568888887 578999999999999998653 3566788899999999999 68999999999999999
Q ss_pred eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ec--CCcEEEEEECCCC-EEEE
Q 016134 302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FS--KHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~--~~~v~~l~~sp~~-~l~t 377 (394)
+++.+....+..|...+..+ +|+|+|+ .+++.+.||+|++|+.++.+....- .. ...-..|.|.-|| +++.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~----AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGI----AWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred hhhhhhhheeccCcCceeEE----EECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 99998888888887654333 4699999 9999999999999999887543322 11 2233456677788 6555
Q ss_pred EeCC----CeEEEEeCC
Q 016134 378 GDGA----GMLGVWKLL 390 (394)
Q Consensus 378 gs~D----g~I~vWd~~ 390 (394)
.+.| .+|.+||.+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred ecccccchhhhhhhhhh
Confidence 5544 356777654
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.1e-17 Score=142.94 Aligned_cols=219 Identities=15% Similarity=0.220 Sum_probs=152.7
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc-----EEEecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA-----EFSLDGPVGEVYSMVVANE--MLFAGAQD----- 232 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~-----~~~~~~~~~~v~~l~~~~~--~l~~~~~~----- 232 (394)
+..|++|.+.|++++|+.||++|+|++.|+. ||+++.-. +++..-..+.-+.+.|.|| .+++....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4577999999999999999999999999999 69987533 2344444557788999998 33322222
Q ss_pred --------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134 233 --------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW 284 (394)
Q Consensus 233 --------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 284 (394)
.|.-.|..+-.. +.+|++++.|.+|.|||++ |+.++.+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 244445444443 5789999999999999999 89888887655555555555
Q ss_pred --CCEEEEEeCCCcEEEEEeC---CCc-----eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--
Q 016134 285 --DQFLLSCSLDHTIKVWFAT---GRG-----NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-- 352 (394)
Q Consensus 285 --~~~l~s~s~Dg~i~vwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-- 352 (394)
|.++++++.---|++|.+- .++ .+..+.+|... +. ..+|+++.. .+++.+.||+++|||+.-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa--V~--~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA--VL--AAAFSNSST-RAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh--ee--eeeeCCCcc-eeEEEecCCcEEEeeccceEe
Confidence 8999999999999999853 121 22334444433 33 334799888 8999999999999997532
Q ss_pred -----ceeEEE---ec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 353 -----MERGRI---FS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 353 -----~~~~~~---~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
+.+... .+ ......++.+|++.++..+....|+++..+.
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 111111 11 3334589999999444444555688887654
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.2e-17 Score=141.23 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=149.2
Q ss_pred cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----
Q 016134 171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---- 244 (394)
Q Consensus 171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---- 244 (394)
.+|++-|.++.|++.|+++|||+.|++ |||.+..... .-++.....|.+.|..+.|-
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-----------------W~~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-----------------WSCTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----------------eEEeeeEEecCCcEEEEEecCccc
Confidence 479999999999999999999999999 7997543321 22334555889999999995
Q ss_pred CCeEEEEeCCCeEEEEeCC---------CCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 245 RSRLCSGSMDNTIRVWELD---------TLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
|+.+|+++.|+++.||.-. ......++....+.|+.+.|. |-.|++++.||.||||+..+...+...
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 7889999999999999752 122455677778899999998 678999999999999987665443332
Q ss_pred ec---------ccCCcceEEEEeeECC--CCCcEEEEEeCC-----CeEEEEECCCCc----eeEEEec-CCcEEEEEEC
Q 016134 312 YT---------HKEDNGVLALGGLNDP--DGKPVLICACND-----NTVHLYELPSFM----ERGRIFS-KHEVRVIEIG 370 (394)
Q Consensus 312 ~~---------~~~~~~~~~~~~~~s~--~g~~~l~sgs~d-----g~I~iwd~~~~~----~~~~~~~-~~~v~~l~~s 370 (394)
.- ........+.++.|+| -..++|+.|+.+ +.++||...... .+.++.. ..+|+.|+|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 21 1111222333334443 344588888866 589999876553 2223333 7789999999
Q ss_pred CCC-----EEEEEeCCCeEEEEeCCC
Q 016134 371 PDK-----LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 371 p~~-----~l~tgs~Dg~I~vWd~~~ 391 (394)
|+- +||+++.|| |+||.+..
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEee
Confidence 973 899999999 99999874
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.4e-18 Score=159.30 Aligned_cols=276 Identities=13% Similarity=0.094 Sum_probs=185.1
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccccc-----------------CCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL-----------------LGN 145 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~-----------------~~~ 145 (394)
-+.|+++||.|+++|||.+.|+.+..+-.--+.+....|.++....|-.++ .-.|-..+ +.+
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcC
Confidence 455999999999999999999987543322222233335555444444444 22221111 111
Q ss_pred eecCCCCCeEEEEEcCC---CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEE-EecCCCCcE
Q 016134 146 CVRGDECRFLHSWFCGE---GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEF-SLDGPVGEV 216 (394)
Q Consensus 146 ~~~g~~~~~i~iWd~~~---~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~-~~~~~~~~v 216 (394)
-.....+..+-.|.-.. ...-+.....|...|..|.|+..|+||++...++. |.++...... .+.
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~------ 563 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR------ 563 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh------
Confidence 11123345566786542 12224555679999999999999999999988765 4666544433 111
Q ss_pred EEEEEcCCEEEEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134 217 YSMVVANEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS 292 (394)
Q Consensus 217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 292 (394)
...+.|.++.|++ .+|++++ ...|+|||+...+.++.+......|.+++.+ |+.|+.++
T Consensus 564 ----------------kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 564 ----------------KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred ----------------hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 1234566667763 3455554 4789999999888888887777888899888 79999999
Q ss_pred CCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC------CCceeE---EEec--
Q 016134 293 LDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP------SFMERG---RIFS-- 360 (394)
Q Consensus 293 ~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~------~~~~~~---~~~~-- 360 (394)
.|+.+..+|+.-. ++.+++..|......++ |++.-. ++++|+.|+++.||.-. ..-++. .+.+
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va----~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA----FHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhh----hccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 9999999999754 45555666665555444 477666 99999999999998532 121222 2222
Q ss_pred ---CCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134 361 ---KHEVRVIEIGPDK-LFFTGDGAGMLGVW 387 (394)
Q Consensus 361 ---~~~v~~l~~sp~~-~l~tgs~Dg~I~vW 387 (394)
.-.|..+.|+|.. .|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 2347888899999 99999999999998
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=8.3e-18 Score=143.77 Aligned_cols=253 Identities=18% Similarity=0.224 Sum_probs=178.5
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--A 198 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--v 198 (394)
.++|...++++. |....+ + ++|...|.|++|++.+. ..+..++ .|...|+.+.--|+ ..|.+-+.|.. +
T Consensus 10 LRp~~~~v~s~~-fqa~~r-L----~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 10 LRPHSSSVTSVL-FQANER-L----MSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eccccchheehh-hccchh-h----hcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 446667777777 555444 3 34555569999999887 5566666 67889999999887 67889999998 5
Q ss_pred eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC----------------------------------CCCCCEEEEEec
Q 016134 199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD----------------------------------GHTRPVTCLAVG 244 (394)
Q Consensus 199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~----------------------------------~h~~~V~~l~~~ 244 (394)
|++.....+.+. .-.++++.|.+..+...... +..+.+.|..+.
T Consensus 82 w~ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 82 WTIAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 998875544221 12233333332211111110 455677777764
Q ss_pred ---CC--eEEEEeCCCeEEEEeCCCCcee----------EEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-
Q 016134 245 ---RS--RLCSGSMDNTIRVWELDTLEPV----------MTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG- 306 (394)
Q Consensus 245 ---~~--~l~sgs~Dg~V~iwd~~~~~~~----------~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~- 306 (394)
+. +++.|.++|.|.+||+.++..+ .....|..+|.++.|. -..=++++.+..+..|.+....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 22 4788889999999999987433 3344588999999998 3455677888889999887541
Q ss_pred e--eeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCC
Q 016134 307 N--LEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGA 381 (394)
Q Consensus 307 ~--~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~D 381 (394)
. +..... .......+.+ -||++ ++|+++.|+.||||+.++...+..+.. ...|++++|+|+. ++|.++.|
T Consensus 240 slq~~~e~~lknpGv~gvrI----RpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRI----RPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccccceEEecCCCccceEE----ccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 1 111111 2222333344 78999 999999999999999999998877754 7889999999996 99999999
Q ss_pred CeEEEEeC
Q 016134 382 GMLGVWKL 389 (394)
Q Consensus 382 g~I~vWd~ 389 (394)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999997
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=5e-18 Score=156.53 Aligned_cols=215 Identities=16% Similarity=0.241 Sum_probs=165.5
Q ss_pred CCeEEEEEcCCC--ceEEEEecc--cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCC
Q 016134 152 CRFLHSWFCGEG--LTMLAKLEG--HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANE 224 (394)
Q Consensus 152 ~~~i~iWd~~~~--~~~~~~l~~--h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~ 224 (394)
-+.|+|||+... ..++..|.. ....|.++.+.|||+.|++|+.-.+ |||+....... ..-.
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt------------ 506 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT------------ 506 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC------------
Confidence 458999999533 234444433 3567999999999999999999666 79998665421 1000
Q ss_pred EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
.-...+.+|+.+ .++.+++..||.|.|||+.+...++.|++|++.+.||..+ |..|.+|+.|++||.|
T Consensus 507 --------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW 578 (705)
T KOG0639|consen 507 --------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW 578 (705)
T ss_pred --------CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence 111233344444 5678889999999999999999999999999999999999 8899999999999999
Q ss_pred EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe
Q 016134 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD 379 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs 379 (394)
|+++++.+.. |.....++++ -+.|.+. +|+.|-+++.+.|......+.-..-.++.-|.++.|.+-| .+++.+
T Consensus 579 Dlregrqlqq---hdF~SQIfSL--g~cP~~d-WlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 579 DLREGRQLQQ---HDFSSQIFSL--GYCPTGD-WLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hhhhhhhhhh---hhhhhhheec--ccCCCcc-ceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence 9998766544 3333344444 4689998 9999999999999988766555444557779999999999 999999
Q ss_pred CCCeEEEEeCCCC
Q 016134 380 GAGMLGVWKLLAK 392 (394)
Q Consensus 380 ~Dg~I~vWd~~~~ 392 (394)
.|..+..|.....
T Consensus 653 kDnlLnawrtPyG 665 (705)
T KOG0639|consen 653 KDNLLNAWRTPYG 665 (705)
T ss_pred chhhhhhccCccc
Confidence 9999999987543
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.7e-18 Score=172.26 Aligned_cols=231 Identities=19% Similarity=0.280 Sum_probs=177.7
Q ss_pred ccccccc----cCCCeecCCCCCeEEEEEcCC-----CceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecC
Q 016134 135 KNVCCHW----LLGNCVRGDECRFLHSWFCGE-----GLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIE 202 (394)
Q Consensus 135 ~~~~~~~----~~~~~~~g~~~~~i~iWd~~~-----~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~ 202 (394)
|.+.+.- ||+++.+| .|.+||... ....+.++..|++.|..|.|++.. +.||+|+.||. |||+.
T Consensus 72 W~~~g~~~~GlIaGG~edG----~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 72 WGSYGSHSHGLIAGGLEDG----NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred ecccCCCccceeeccccCC----ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 5554444 55555555 999999853 246778888999999999999965 59999999999 69998
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC--C
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD--A 277 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~--~ 277 (394)
.-+.....+. ..-...|.+|+|+ ...|++++.+|.+.|||++..+++..+..+.. .
T Consensus 148 n~~tP~~~~~-------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 148 KPETPFTPGS-------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred CcCCCCCCCC-------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 7443211110 0345789999998 46799999999999999999888888876655 3
Q ss_pred cEEEEEc---CCEEEEEeCCC---cEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 278 PMSLLCW---DQFLLSCSLDH---TIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 278 v~~l~~~---~~~l~s~s~Dg---~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
+..+.|+ ...|++++.|. .|.+||+|.... ++.+..|.. .++++. |.+.+..+|++++.|+.|.+|+.+
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--Gilsls--Wc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GILSLS--WCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc--ceeeec--cCCCCchhhhcccCCCCeeEecCC
Confidence 6788888 34666776654 699999987544 444445553 455554 455564599999999999999999
Q ss_pred CCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134 351 SFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 351 ~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
+++.+..+.. ..++..+.|.|.. .|+.++-||.|.|+.+...
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999887 6779999999988 9999999999999998753
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=2.7e-17 Score=144.38 Aligned_cols=286 Identities=18% Similarity=0.215 Sum_probs=192.8
Q ss_pred CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCC-CCCccccccCCCCccceeeec------cccccccccCCC
Q 016134 73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNS-SSASSTVSDESGDKSTSKKTT------LKNVCCHWLLGN 145 (394)
Q Consensus 73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s-~~~~~~~~~~~g~~~~v~~~~------~~~~~~~~~~~~ 145 (394)
..+..|+| |++-|.+-|.|+.+++||+....+.....- +...--.+...-...+|-... ...|...++|..
T Consensus 52 ~kgckWSP--DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSP--DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCC--CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45778999 999999999999999999987665432110 000000000001111222211 123444444433
Q ss_pred eecCCCCCeEEEEEcCCCceEEEEecc--cCCC---eEEEEecCCCCEEEEEeCCCc-eeec-CCCcEEEecCCCCcEEE
Q 016134 146 CVRGDECRFLHSWFCGEGLTMLAKLEG--HEKA---VSGIALPLRSDKLFSGSRDGT-AWNI-ESSAEFSLDGPVGEVYS 218 (394)
Q Consensus 146 ~~~g~~~~~i~iWd~~~~~~~~~~l~~--h~~~---V~~l~~s~~~~~l~sgs~Dg~-vWd~-~~~~~~~~~~~~~~v~~ 218 (394)
. .+.-|++||..++ ++...+.+ |.+. -.+|+|+|||.+|+.|-.... |+|+ +.|... +++.
T Consensus 130 s----r~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c-------~vy~ 197 (406)
T KOG2919|consen 130 S----RDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC-------PVYT 197 (406)
T ss_pred c----ccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC-------cchh
Confidence 3 4448999999888 55555554 5444 467999999999998876655 6887 333321 1111
Q ss_pred EEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC
Q 016134 219 MVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL 293 (394)
Q Consensus 219 l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~ 293 (394)
..+ ....+..+-|.|++|+ ...++.|+.-..+-||.-....+++.+-+|.+.|+.+.|. |+.|++|+.
T Consensus 198 t~~-------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 198 TVT-------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred hhh-------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc
Confidence 111 1122556778888887 3579999999999999988899999999999999999998 888888876
Q ss_pred -CCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-CceeEEEec-CCcEEEEEE
Q 016134 294 -DHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FMERGRIFS-KHEVRVIEI 369 (394)
Q Consensus 294 -Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~-~~~v~~l~~ 369 (394)
|-.|..||+|..+ .+..+..|... +...+.+...|+++ +|++|+.||.|++||+.+ +..+..+.. ...++.+++
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~-TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGD-TNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccC-ccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 7789999999754 34444444442 22222333588998 999999999999999998 454444433 677999999
Q ss_pred CCCC-EEEEEeCC
Q 016134 370 GPDK-LFFTGDGA 381 (394)
Q Consensus 370 sp~~-~l~tgs~D 381 (394)
+|-- +++|++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9987 77777654
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=3e-17 Score=142.15 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=172.5
Q ss_pred cccccCCCeecCCCCCeEEEEEcCCCc-eEEE-EecccCCCeEEEEecCCC-----CEEEEEeCCCceeecCCCcE-EEe
Q 016134 138 CCHWLLGNCVRGDECRFLHSWFCGEGL-TMLA-KLEGHEKAVSGIALPLRS-----DKLFSGSRDGTAWNIESSAE-FSL 209 (394)
Q Consensus 138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~-~l~~h~~~V~~l~~s~~~-----~~l~sgs~Dg~vWd~~~~~~-~~~ 209 (394)
..+++|-+++..+....|.|-.+.... +.+. .-..|.-+++.+.|.|+. ++|||.+.-=.+|.+...+. +..
T Consensus 58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVEL 137 (364)
T ss_pred cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceeh
Confidence 456677777766666677777664221 2221 113699999999999976 46777665555899874321 111
Q ss_pred cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCcEEEEE
Q 016134 210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 210 ~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~ 283 (394)
.. .|-......+..+++++.|+ ++++.+.|-|-+..|||++++. ...++-+|...|..++|
T Consensus 138 ~~-------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf 204 (364)
T KOG0290|consen 138 QS-------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF 204 (364)
T ss_pred hh-------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence 00 00000112567899999997 7899999999999999999864 35567789999999999
Q ss_pred c---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeC-CCeEEEEECCCCc-eeEE
Q 016134 284 W---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACN-DNTVHLYELPSFM-ERGR 357 (394)
Q Consensus 284 ~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~~~~-~~~~ 357 (394)
. -+.|++++.||.+|+||+|..+.-..++....+ ...+. .+|++...+++|+-.. ...|.|.|++... .+..
T Consensus 205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR--LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR--LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee--eccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9 368999999999999999987766666654442 23333 3456666667776544 4679999999764 3444
Q ss_pred Eec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134 358 IFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 358 ~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~ 393 (394)
+.. ...|+.++|.|.. .|+|++.|.++.+||+++-+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 443 7789999999987 99999999999999998755
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=157.38 Aligned_cols=237 Identities=19% Similarity=0.196 Sum_probs=182.8
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eec
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNI 201 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~ 201 (394)
+|..--+.+. +.+.+.++.+...+| .|++|+.....+.-.++.-+...|.+++.. +.+|++++.+++| +.+
T Consensus 11 aht~G~t~i~-~d~~gefi~tcgsdg----~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLIC-YDPDGEFICTCGSDG----DIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEE-EcCCCCEEEEecCCC----ceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeC
Confidence 3443455666 889999887766666 899999865422223333388889888874 5599999999994 888
Q ss_pred CCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134 202 ESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR 258 (394)
Q Consensus 202 ~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~ 258 (394)
.+++.- .+....-++..++|+.+ .++.|+.| +|..+|.+|.|+ +++||+.+-||.|+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 877765 45566778889999887 78877777 899999999998 68999999999999
Q ss_pred EEeCCCCceeEEEcCC--------CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134 259 VWELDTLEPVMTLNDH--------TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND 328 (394)
Q Consensus 259 iwd~~~~~~~~~~~~h--------~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (394)
|||+.++.+..++.+- ...+..++|+ +..|+..+.|+.|++|+....+....+.......... ...|+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~--~~~ws 241 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS--DLQWS 241 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE--EEEEc
Confidence 9999998887776541 3345677888 5678888899999999999888877776654433322 34589
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
|.|+ +||+++.||.|.|||..+.+. ......|.+++|.|+.
T Consensus 242 PnG~-YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 242 PNGK-YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA 282 (933)
T ss_pred CCCc-EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence 9999 999999999999999998222 1125679999999987
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.6e-17 Score=154.74 Aligned_cols=218 Identities=16% Similarity=0.232 Sum_probs=175.6
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC----EEEEEecC------
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQD------ 232 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~~------ 232 (394)
.+...+.||++.|.+|...|.|..|++|+.||+ ||.+.++.++......+.|.+|+|+|. .|+++...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 566788999999999999999999999999999 799999999988888889999999987 44444333
Q ss_pred ------------------------------------------------CCCCCEEEEEec--CCeEEEEeCC---CeEEE
Q 016134 233 ------------------------------------------------GHTRPVTCLAVG--RSRLCSGSMD---NTIRV 259 (394)
Q Consensus 233 ------------------------------------------------~h~~~V~~l~~~--~~~l~sgs~D---g~V~i 259 (394)
.|...|..+.|+ |++|++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 477889999998 8899887654 57999
Q ss_pred EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134 260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC 337 (394)
Q Consensus 260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s 337 (394)
+++...+....|..-.+.|.++.|+ ..+|++++. ..|++||+..+..++.+.........+++ +|.|. -|+.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi----hp~GD-nli~ 624 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI----HPNGD-NLIL 624 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee----cCCCC-eEEE
Confidence 9998776666666566789999999 456666654 78999999887777766655544455554 89898 5677
Q ss_pred EeCCCeEEEEECCCCcee-EEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 338 ACNDNTVHLYELPSFMER-GRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 338 gs~dg~I~iwd~~~~~~~-~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
|+.|+.+..||+.-.... ..+. |...+++++|++.- +|++|+.||++.|+-
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999999999866433 3333 36679999999998 999999999999884
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=9e-18 Score=157.02 Aligned_cols=251 Identities=20% Similarity=0.274 Sum_probs=170.6
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-------CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-------EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG 196 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg 196 (394)
-|.-.++... +.+..-.++++. .+++|.+|++. ...+++.+|.+|.++|.|+++.++++.+++|+.||
T Consensus 292 s~~d~ir~l~-~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALA-FHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred cchhhhhhhh-cCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3334555555 555554555444 45599999982 23688999999999999999999999999999999
Q ss_pred ce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134 197 TA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN 272 (394)
Q Consensus 197 ~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 272 (394)
+| |++..... ....+.. ..+.+..-||+..|+.++++ .+.|++++.||+|++|+.....+ .+|.
T Consensus 367 ~I~~w~~p~n~d-p~ds~dp----------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~ 434 (577)
T KOG0642|consen 367 TIRCWNLPPNQD-PDDSYDP----------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG 434 (577)
T ss_pred eeeeeccCCCCC-cccccCc----------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence 95 98762221 1111100 23444555999999999998 67899999999999999876555 3333
Q ss_pred C--CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCce---eeEeecccCCcc---eEEEEeeECCCCCcEEEEEeCCCeE
Q 016134 273 D--HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGN---LEAAYTHKEDNG---VLALGGLNDPDGKPVLICACNDNTV 344 (394)
Q Consensus 273 ~--h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I 344 (394)
. ..+...++.+-...++-...+...+.+++.+.+. +..+.....+.. .....+..+|.+. +.+++..|+.|
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~I 513 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSI 513 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCce
Confidence 2 2344566766633222222233444444433332 222221111100 1111223477776 99999999999
Q ss_pred EEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 345 HLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 345 ~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+++|..++..+..... ...++++++.|+| +|++++.|+.+++|.+..+
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999999988876654 7789999999999 9999999999999998654
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=2.8e-17 Score=150.18 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=152.9
Q ss_pred eEEEEecccCCCeEEEEecCCC--CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRS--DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC 240 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~ 240 (394)
....+.+-|.+.|++++|+|.. +++++|+.-|. +||+.+.+... ..|+ -...|..+|.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-----d~v~------------~f~~hs~~Vs~ 239 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-----DGVY------------LFTPHSGPVSG 239 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----CceE------------EeccCCccccc
Confidence 4456667789999999999955 57778888888 59996332210 0000 11167888888
Q ss_pred EEec---CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeEee
Q 016134 241 LAVG---RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEAAY 312 (394)
Q Consensus 241 l~~~---~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~ 312 (394)
|.|+ ...+++.|.||+|++-|++... .+..+......+.++.|. ...++.+..=|.+.+||+++++. ...+.
T Consensus 240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 8887 4679999999999999998754 344444344456666776 45666666666999999998765 55555
Q ss_pred cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-----eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-----RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
.|...+..+.+ +|....+|++++.|++++|||++.... +..+.+...|.++.|+|.+ .|+|.+.|..|+|
T Consensus 320 lh~kKI~sv~~----NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 320 LHKKKITSVAL----NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhcccceeec----CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence 56665555554 888888999999999999999986532 4455668889999999998 9999999999999
Q ss_pred EeCC
Q 016134 387 WKLL 390 (394)
Q Consensus 387 Wd~~ 390 (394)
||..
T Consensus 396 ~dss 399 (498)
T KOG4328|consen 396 FDSS 399 (498)
T ss_pred eecc
Confidence 9973
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-16 Score=146.73 Aligned_cols=260 Identities=15% Similarity=0.206 Sum_probs=179.8
Q ss_pred CCCCcccccccc-cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134 73 KSPPSYNRLKNN-LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE 151 (394)
Q Consensus 73 ~~~~~~~~~~~~-~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~ 151 (394)
-...-|+. .+ .-.++-++|+.+++|.-+.+..+-+. ..-..|+ .-.+|+ ...-..|+. +|+.
T Consensus 37 ~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~--------~~k~~gd--~~~Cv~-~~s~S~y~~----sgG~ 99 (673)
T KOG4378|consen 37 DFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPR--------VRKLTGD--NAFCVA-CASQSLYEI----SGGQ 99 (673)
T ss_pred ceeeeccc--cceEEEeecCCceeEEEecccCCCCccce--------eeccccc--hHHHHh-hhhcceeee----ccCc
Confidence 45556665 33 34466778999999987765211000 0012222 222232 111123443 4555
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 229 (394)
.++|+|||+... .+.+.+++|+..|+++.++....+||+++..|. |-.+.++.......+
T Consensus 100 ~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----------------- 161 (673)
T KOG4378|consen 100 SGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----------------- 161 (673)
T ss_pred CceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-----------------
Confidence 669999999854 678889999999999999999999999999888 466666655422221
Q ss_pred ecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEe
Q 016134 230 AQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 230 ~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~ 302 (394)
+....|.-+.|+ ..+|.+++.+|.|.+||+....++..+ +.|..+...++|+ ..+|++.+.|..|.+||+
T Consensus 162 ---~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 162 ---DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred ---CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 112233445565 356889999999999999887776655 5799999999998 578999999999999999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEE
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFF 376 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~ 376 (394)
+.......+. ...+...++ |.++|. +|+.|...|.|..||++..+......+ ...|++++|-|.-.++
T Consensus 239 ~s~~s~~~l~-y~~Plstva----f~~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 239 RSQASTDRLT-YSHPLSTVA----FSECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred ccccccceee-ecCCcceee----ecCCce-EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 8765544443 233333333 589998 999999999999999998755444433 5669999998875333
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=7.6e-17 Score=152.71 Aligned_cols=223 Identities=22% Similarity=0.321 Sum_probs=152.9
Q ss_pred ecCCCCCeEEEEEcCCC-----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEE
Q 016134 147 VRGDECRFLHSWFCGEG-----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM 219 (394)
Q Consensus 147 ~~g~~~~~i~iWd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l 219 (394)
+.++++|.|.++|...- ...+.....|...|.++.|.|...+|++++.|.+ +||+++.++....
T Consensus 68 avadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--------- 138 (720)
T KOG0321|consen 68 AVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--------- 138 (720)
T ss_pred EEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce---------
Confidence 34466779999998532 1224566789999999999997789999999999 5999988776321
Q ss_pred EEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc--------------------e-------eE
Q 016134 220 VVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE--------------------P-------VM 269 (394)
Q Consensus 220 ~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~--------------------~-------~~ 269 (394)
..-+|...|.+++|. ...|++|+.||.|.|||++-.. + +.
T Consensus 139 ----------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 139 ----------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred ----------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 011788888888886 6789999999999999997321 1 11
Q ss_pred EEcCCCCC----cEEEEEc-CCEEEEEeC-CCcEEEEEeCCCceeeEe--------eccc-CCcceEEEEeeECCCCCcE
Q 016134 270 TLNDHTDA----PMSLLCW-DQFLLSCSL-DHTIKVWFATGRGNLEAA--------YTHK-EDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 270 ~~~~h~~~----v~~l~~~-~~~l~s~s~-Dg~i~vwd~~~~~~~~~~--------~~~~-~~~~~~~~~~~~s~~g~~~ 334 (394)
..+++... |+.+.|- +..||+++. |+.|+|||++........ ..+. .......+ ..+..|. +
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL--~lDssGt-~ 285 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL--ILDSSGT-Y 285 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE--EecCCCC-e
Confidence 12233333 4445555 778999988 999999999975433221 1111 11223333 3466778 4
Q ss_pred EEEEeCCCeEEEEECCCCce--eEEEec----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 335 LICACNDNTVHLYELPSFME--RGRIFS----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~--~~~~~~----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|.+.+.|+.|++|++.+... +..+.+ ...|.+ ..+||+ +|++|+.|....+|.+...
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCc
Confidence 55556699999999987533 222322 111222 467898 9999999999999998764
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.5e-16 Score=141.60 Aligned_cols=225 Identities=20% Similarity=0.265 Sum_probs=167.3
Q ss_pred ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC------ceEEEEecccCCCeEEEEecCC-CCEEEEE
Q 016134 120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG------LTMLAKLEGHEKAVSGIALPLR-SDKLFSG 192 (394)
Q Consensus 120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~------~~~~~~l~~h~~~V~~l~~s~~-~~~l~sg 192 (394)
....||+..|-.+. |+|-...+. .+|+.|-+|.||++..+ .+++..|.||+..|--++|+|. .+.|+|+
T Consensus 75 P~v~GHt~~vLDi~-w~PfnD~vI---ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 75 PLVCGHTAPVLDID-WCPFNDCVI---ASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCccCccccccccc-cCccCCcee---ecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 36789999999999 999666543 35566669999998643 4678999999999999999995 5789999
Q ss_pred eCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCcee
Q 016134 193 SRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPV 268 (394)
Q Consensus 193 s~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~ 268 (394)
+.|.+ ||++.+++.+... .|...|.++.|+ |.+|++.+.|+.|||||.++++.+
T Consensus 151 g~Dn~v~iWnv~tgeali~l----------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITL----------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred cCCceEEEEeccCCceeeec----------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 99998 6999999876322 366777777776 899999999999999999999999
Q ss_pred EEEcCCCCCc-EEEEEc--CCEEEEEe----CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134 269 MTLNDHTDAP-MSLLCW--DQFLLSCS----LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341 (394)
Q Consensus 269 ~~~~~h~~~v-~~l~~~--~~~l~s~s----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d 341 (394)
..-.+|.+.- ..+.|. +. +++.+ .++++-+||..+-+....+........++ -..|+++.+-+.++|-.|
T Consensus 209 ~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl--~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL--LPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred eecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceE--EeeecCCCCEEEEEecCC
Confidence 9887887643 333344 55 55544 37899999977654444444444333333 234799988677888889
Q ss_pred CeEEEEECCCCceeEEEe----cCCcEEEEEECCCC
Q 016134 342 NTVHLYELPSFMERGRIF----SKHEVRVIEIGPDK 373 (394)
Q Consensus 342 g~I~iwd~~~~~~~~~~~----~~~~v~~l~~sp~~ 373 (394)
+.|+.|.+....+...+. ...+-..+.|.|..
T Consensus 286 ~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 286 SSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 999999998766443332 24556667777653
No 161
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=6.9e-15 Score=135.94 Aligned_cols=215 Identities=12% Similarity=0.054 Sum_probs=146.6
Q ss_pred cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEE-EEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134 148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL-FSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~ 224 (394)
++..++.|++||..++ +.+..+..|.. +.+++|+|+++.+ ++++.++. +||..+++......
T Consensus 6 s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------------- 70 (300)
T TIGR03866 6 SNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP------------- 70 (300)
T ss_pred EecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-------------
Confidence 3445669999999877 66777776644 6789999999877 56667777 59998876653211
Q ss_pred EEEEEecCCCCCCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC-cEE
Q 016134 225 MLFAGAQDGHTRPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH-TIK 298 (394)
Q Consensus 225 ~l~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg-~i~ 298 (394)
.+ ..+..++|+ ++.+ ++++.|+.|++||+++.+.+..+.. ...+.++.++ ++++++++.++ .+.
T Consensus 71 --------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 71 --------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred --------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEE
Confidence 11 112344554 4555 4456689999999999888877763 3346778887 77888887765 567
Q ss_pred EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--------CCcEEEEEEC
Q 016134 299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--------KHEVRVIEIG 370 (394)
Q Consensus 299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s 370 (394)
+||.++.+......... ... ...|+|+++.+++++..++.|++||+++++.+..+.. ......++|+
T Consensus 141 ~~d~~~~~~~~~~~~~~-~~~----~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 141 FIDTKTYEIVDNVLVDQ-RPR----FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred EEeCCCCeEEEEEEcCC-Ccc----EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 78988766554433221 112 2346999984445666799999999999877665532 1124568899
Q ss_pred CCC-E-EEEEeCCCeEEEEeCCCC
Q 016134 371 PDK-L-FFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 371 p~~-~-l~tgs~Dg~I~vWd~~~~ 392 (394)
|++ + +++...++.|.+||+.+.
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCC
Confidence 999 4 444556778999998753
No 162
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=154.68 Aligned_cols=220 Identities=18% Similarity=0.193 Sum_probs=171.1
Q ss_pred CCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEe-
Q 016134 92 EDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKL- 170 (394)
Q Consensus 92 ~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l- 170 (394)
+++.++.||..+.....+. ..+....-....++++. .++||++...+...| +|-++++..+ .....+
T Consensus 420 ~~~~~~tW~~~n~~~G~~~------L~~~~~~~~~~~~~av~-vs~CGNF~~IG~S~G----~Id~fNmQSG-i~r~sf~ 487 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHV------LDPKRFKKDDINATAVC-VSFCGNFVFIGYSKG----TIDRFNMQSG-IHRKSFG 487 (910)
T ss_pred CcceEEEEeccCcccccEE------ecCccccccCcceEEEE-EeccCceEEEeccCC----eEEEEEcccC-eeecccc
Confidence 3567777887755432211 11111222447888888 999999998888777 9999999988 455556
Q ss_pred --cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134 171 --EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-- 244 (394)
Q Consensus 171 --~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-- 244 (394)
..|.++|++++...-++.++|++.+|. .||......+.... -...+.++.++
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~----------------------l~~~~~~iv~hr~ 545 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR----------------------LGSSITGIVYHRV 545 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec----------------------cCCCcceeeeeeh
Confidence 589999999999999999999999999 59998877542111 12344555554
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 322 (394)
..+++.+..|-.|+++|..+.+.++.|.+|.+.|++++|+ |+.|++++.|++|++||+.++..+..+... ..+
T Consensus 546 s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----~~~ 620 (910)
T KOG1539|consen 546 SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----SPC 620 (910)
T ss_pred hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----Ccc
Confidence 5778999999999999999999999999999999999999 899999999999999999999887776533 233
Q ss_pred EEeeECCCCCcEEEEEeCC-CeEEEEECCC
Q 016134 323 LGGLNDPDGKPVLICACND-NTVHLYELPS 351 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~ 351 (394)
....|+|+|. +||+...| .-|++|.-.+
T Consensus 621 ~sls~SPngD-~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 621 TSLSFSPNGD-FLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeeEECCCCC-EEEEEEecCceEEEEEchh
Confidence 4455799999 99999888 7899996543
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=133.32 Aligned_cols=191 Identities=14% Similarity=0.196 Sum_probs=150.1
Q ss_pred eEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe
Q 016134 177 VSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 177 V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs 252 (394)
-.|+.|++.|.+||.|..||. |||+.+...-+ ...+|..+|++++|+ +.+|+++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---------------------~lsaH~~pi~sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---------------------MLSAHVRPITSLCWSRDGRKLLTSS 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---------------------hhhccccceeEEEecCCCCEeeeec
Confidence 789999999999999999999 69998866332 222789999999998 88999999
Q ss_pred CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134 253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP 329 (394)
Q Consensus 253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 329 (394)
.|..|.+||+..+.+++.+. ..++|+.+.|+ .+..+++-.+..-.+-++..++....-..........+-+..|++
T Consensus 85 ~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred CCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence 99999999999999999987 67899999998 344444445555666666553222111111222223333345789
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 330 DGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.|+ ++++|...|.+.+||..+.+++..+.. ...|..+.++..| .|+.-+.|..||.|+++
T Consensus 164 ~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 164 RGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 999 999999999999999999988887765 3679999999999 99999999999999986
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.7e-15 Score=141.63 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=157.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEE
Q 016134 174 EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCS 250 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~s 250 (394)
..+|.+|||+.+.+.||.+-.||. ||++..+-..... +.| +....|.+|+|. +..|++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g---~~drsIE~L~W~e~~RLFS 85 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHG---PEDRSIESLAWAEGGRLFS 85 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------Eec---CCCCceeeEEEccCCeEEe
Confidence 578999999999999999999999 6999886544221 111 345678899998 789999
Q ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134 251 GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND 328 (394)
Q Consensus 251 gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (394)
.+.+|+|.-||+.+++++..+....+.|++++.+ +..++.+++||.+..++...++......-......+ +++.|+
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv--Lslsw~ 163 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV--LSLSWN 163 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE--EEEEec
Confidence 9999999999999999999999999999999998 778999999998888877665544433333333344 455689
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEEEec------C-C--cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS------K-H--EVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~-~--~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
|++. -|++|+.||.|++||+.++..+..... + . -|+++.+-.++.|++|...|.|.+||-..
T Consensus 164 ~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 164 PTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIF 234 (691)
T ss_pred CCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccC
Confidence 9998 799999999999999999987763222 1 1 28899999888999999999999999754
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.8e-15 Score=131.06 Aligned_cols=246 Identities=14% Similarity=0.186 Sum_probs=171.5
Q ss_pred CCCCccceeeeccccccccccCCCeecC-CCC---CeEEEEEcCCCc--------eEEEEec-ccCCCeEEEEecCCCCE
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRG-DEC---RFLHSWFCGEGL--------TMLAKLE-GHEKAVSGIALPLRSDK 188 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g-~~~---~~i~iWd~~~~~--------~~~~~l~-~h~~~V~~l~~s~~~~~ 188 (394)
..-+...|..++ -+|...-+.+.|+.- +.. -.+-||.+.... +++..|. .+-+.|.|+.|.|++..
T Consensus 59 f~h~agEvw~la-s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLA-SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhcCCcceehhh-cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 445556777777 777666666666552 222 357899986542 2333443 45679999999999999
Q ss_pred EEEEeCCCc-eeecCCCcEE--EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEe
Q 016134 189 LFSGSRDGT-AWNIESSAEF--SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWE 261 (394)
Q Consensus 189 l~sgs~Dg~-vWd~~~~~~~--~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd 261 (394)
|++-..... +|+++....+ .+... ...+|....++-+|+ ++.+++. .|+++..||
T Consensus 138 lasm~dn~i~l~~l~ess~~vaev~ss-----------------~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDESSKIVAEVLSS-----------------ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred eEEeccCceEEEEcccCcchheeeccc-----------------ccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence 999886555 6999887663 11110 111345555666675 4556654 589999999
Q ss_pred CCCCceeEEEc-CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEE
Q 016134 262 LDTLEPVMTLN-DHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336 (394)
Q Consensus 262 ~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~ 336 (394)
+++.++...++ +|...|..+.|+ ..+|++|+.|+.|++||.|+.+ ++..+..|. -..+++.|+|....+|+
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs----HWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS----HWVWAVRFNPEHDQLIL 275 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc----eEEEEEEecCccceEEE
Confidence 99988777764 588889999999 3479999999999999999754 344444443 23445567888777999
Q ss_pred EEeCCCeEEEEECCCCc---------------------e--------eEEE-ecCCcEEEEEECCCC--EEEEEeCCCeE
Q 016134 337 CACNDNTVHLYELPSFM---------------------E--------RGRI-FSKHEVRVIEIGPDK--LFFTGDGAGML 384 (394)
Q Consensus 337 sgs~dg~I~iwd~~~~~---------------------~--------~~~~-~~~~~v~~l~~sp~~--~l~tgs~Dg~I 384 (394)
+|+.|..|.+|...+-. . +.++ .+++.|.+++|+.-. .||+-+.||++
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 99999999999754311 0 0111 125679999999877 99999999999
Q ss_pred EEEeCC
Q 016134 385 GVWKLL 390 (394)
Q Consensus 385 ~vWd~~ 390 (394)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 875543
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=144.47 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=184.6
Q ss_pred CCCCcccc-ccccc-ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCc-cceeeeccccccccccCCCeecC
Q 016134 73 KSPPSYNR-LKNNL-WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDK-STSKKTTLKNVCCHWLLGNCVRG 149 (394)
Q Consensus 73 ~~~~~~~~-~~~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~-~~v~~~~~~~~~~~~~~~~~~~g 149 (394)
.-|..... +.++. .|+++|-.+....||+++.+.+..+ -..|++ +.++.+. .++|+.+|+.....|
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~----------~~~g~e~~~~e~Fe-VShd~~fia~~G~~G 325 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK----------PPYGVEEKSMERFE-VSHDSNFIAIAGNNG 325 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeecccccccccc----------CCCCcccchhheeE-ecCCCCeEEEcccCc
Confidence 34444444 33444 5666666899999999999987655 345555 6788888 899999999888887
Q ss_pred CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
.|++.-..++ +.+..++ -.+.|.+++|+.+++.|+.++.+|. +||++...++.....++.|..
T Consensus 326 ----~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g--------- 390 (514)
T KOG2055|consen 326 ----HIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG--------- 390 (514)
T ss_pred ----eEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce---------
Confidence 9999998877 7777765 4789999999999999999999999 589988877755444433322
Q ss_pred EEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC------CceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcE
Q 016134 228 AGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT------LEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTI 297 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i 297 (394)
.-.|++.++.+||+||..|.|.|||.++ .+++.++..-...|+++.|+ .++|+.||. +..+
T Consensus 391 ---------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 391 ---------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred ---------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence 2234445688999999999999999754 56778887788899999999 678887775 7789
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
|+-.+........+.....+.. ...++.|+|.+. +|+.|..+|.+.+|.+.
T Consensus 462 rLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 462 RLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEeccceeeeccCCCCCCccc-ceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 9999988777666665544433 223556899998 99999999999999874
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=3.1e-15 Score=135.14 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=122.0
Q ss_pred cceeeecccccccc-ccCCCeecCCCCCeEEEEEcCCC--------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134 127 STSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEG--------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197 (394)
Q Consensus 127 ~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 197 (394)
..+.++. ++.... .+|++. .|..|+||.++.+ .+.+..|..|..+|+++.|+|+|++|+||+.+|.
T Consensus 14 ~pv~s~d-fq~n~~~~laT~G----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 14 EPVYSVD-FQKNSLNKLATAG----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CceEEEE-eccCcccceeccc----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 3566666 444333 566554 4458999987522 3456778889999999999999999999999999
Q ss_pred --eeecCCCcEEEecCCCCcEEEEEEcC-CEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134 198 --AWNIESSAEFSLDGPVGEVYSMVVAN-EMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN 272 (394)
Q Consensus 198 --vWd~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~ 272 (394)
+|....-... .... .....+ ..++--...+|...|..++|. +.++++++.|.++++||+..++.+..+.
T Consensus 89 v~lWk~~~~~~~----~~d~--e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 89 VFLWKQGDVRIF----DADT--EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred EEEEEecCcCCc----cccc--hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 5876531111 0000 111111 133434445799999999997 6789999999999999999999999999
Q ss_pred CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC
Q 016134 273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT 303 (394)
Q Consensus 273 ~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~ 303 (394)
.|...+.-++|+ ++++++-+.|...+.+.+.
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeee
Confidence 999999999998 7888888888866666554
No 168
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.5e-14 Score=127.10 Aligned_cols=213 Identities=15% Similarity=0.214 Sum_probs=160.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC-------------------
Q 016134 174 EKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD------------------- 232 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~------------------- 232 (394)
...+..+.|+.+...|..|+.||. ++..+.-... ........|.-+-|+...++..+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence 456777779999999999999998 6665543321 2222333455555665544333333
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCcEEEEEc--CCEEEEEe--CCCcEEEEEeCCC
Q 016134 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND---HTDAPMSLLCW--DQFLLSCS--LDHTIKVWFATGR 305 (394)
Q Consensus 233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~--~~~l~s~s--~Dg~i~vwd~~~~ 305 (394)
....+|.++.++.++|+++-.+. |.|||+++.++++++.. +...+.++.++ +.+|+--+ ..|.|.|||+.+-
T Consensus 85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 23567888888888888887665 99999999999988864 34456666666 44666533 3689999999999
Q ss_pred ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeC
Q 016134 306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDG 380 (394)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~ 380 (394)
+....+..|+....+++ |+++|. +||++++.|+ ||||.+++++.+.++.. ...|.+++|+|++ +|++.+.
T Consensus 164 ~~v~~I~aH~~~lAala----fs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALA----FSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred eeeeEEEecCCceeEEE----ECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999988887665555 599999 9999999987 69999999999998876 4469999999999 9999999
Q ss_pred CCeEEEEeCCCC
Q 016134 381 AGMLGVWKLLAK 392 (394)
Q Consensus 381 Dg~I~vWd~~~~ 392 (394)
.++|+||.++..
T Consensus 239 TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 239 TETVHIFKLEKV 250 (391)
T ss_pred CCeEEEEEeccc
Confidence 999999998754
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.6e-16 Score=156.39 Aligned_cols=248 Identities=18% Similarity=0.216 Sum_probs=179.4
Q ss_pred cCCCCCcccc--cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc-ccCCCee
Q 016134 71 AKKSPPSYNR--LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH-WLLGNCV 147 (394)
Q Consensus 71 ~~~~~~~~~~--~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~ 147 (394)
.+..-++|.. .++.+-|+.|-.|..|-+||...-.-.. +........-|...|+.+. |++... ++|++..
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~------~~~~la~~~~h~G~V~gLD-fN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA------SEEVLATKSKHTGPVLGLD-FNPFQGNLLASGAD 137 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCc------chHHHhhhcccCCceeeee-ccccCCceeeccCC
Confidence 4788899988 3344568888889999999988521110 0011124457778999999 888665 8886666
Q ss_pred cCCCCCeEEEEEcCCCceEEEE-ecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEc
Q 016134 148 RGDECRFLHSWFCGEGLTMLAK-LEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVA 222 (394)
Q Consensus 148 ~g~~~~~i~iWd~~~~~~~~~~-l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~ 222 (394)
+| .|.|||+++...+..- -..-.+.|.+|+|+. ..+.|++++.+|. |||++..+.+ .+..+.+
T Consensus 138 ~g----eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-------- 205 (1049)
T KOG0307|consen 138 DG----EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-------- 205 (1049)
T ss_pred CC----cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--------
Confidence 65 8999999765333222 223568899999987 4577889999877 7999988654 3322211
Q ss_pred CCEEEEEecCCCCCCEEEEEecC---CeEEEEeCCC---eEEEEeCCC-CceeEEEcCCCCCcEEEEEc---CCEEEEEe
Q 016134 223 NEMLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDN---TIRVWELDT-LEPVMTLNDHTDAPMSLLCW---DQFLLSCS 292 (394)
Q Consensus 223 ~~~l~~~~~~~h~~~V~~l~~~~---~~l~sgs~Dg---~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l~s~s 292 (394)
...+..|+|++ ..|++++.|. .|.+||+|. ..+++++++|...|.++.|. ..+|++++
T Consensus 206 ------------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 206 ------------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred ------------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence 13355666762 3466666543 799999985 45788889999999999998 47999999
Q ss_pred CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
.|++|.+|+.++++.+..+... ...++.+.|.|....++++++.||.|.||.+....
T Consensus 274 kD~~ii~wN~~tgEvl~~~p~~----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGEVLGELPAQ----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCeeEecCCCceEeeecCCC----CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999998888777652 23445556788777689999999999999987654
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=6.1e-16 Score=150.48 Aligned_cols=259 Identities=18% Similarity=0.253 Sum_probs=193.1
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
..-+|++||+|+.+|||..++..+.. ..+||...++..+ ++.....+|+++.|- .|++|.+.+
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~~~lA------------s~rGhs~ditdla-vs~~n~~iaaaS~D~----vIrvWrl~~ 263 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETARCLA------------SCRGHSGDITDLA-VSSNNTMIAAASNDK----VIRVWRLPD 263 (1113)
T ss_pred ccceEeecCccceeeeeeccchhhhc------------cCCCCccccchhc-cchhhhhhhhcccCc----eEEEEecCC
Confidence 44489999999999999999888754 6789999999999 888888888877766 999999999
Q ss_pred CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC 240 (394)
Q Consensus 163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~ 240 (394)
+ .++..+.+|+++|++|+|+|-. +.+.||+ +||.+-........+.. | ....-+.+
T Consensus 264 ~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~------~-----------~~~~~~~s 321 (1113)
T KOG0644|consen 264 G-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK------F-----------TEKDLVDS 321 (1113)
T ss_pred C-chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC------c-----------ccccceee
Confidence 8 8899999999999999999954 7788998 79987222111111110 0 11133444
Q ss_pred EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134 241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
+.|. +..+++++.|+....|.+.... .+...+.-+... ..+.+++-.+-.+++|++.++.....+..|.
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 4554 5679999999999999765321 111111111111 3556677778899999999998888888888
Q ss_pred CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
....++.+ +|-+..+..+++.||.+.|||+-.+.++..+.. ...+..-+|++|| .++....-|.+.|...-
T Consensus 396 d~~yvLd~----Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 396 DEVYVLDV----HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cceeeeee----cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 77666655 777776778899999999999999887776655 4557788999999 77777777888887643
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.2e-15 Score=131.58 Aligned_cols=244 Identities=19% Similarity=0.261 Sum_probs=167.5
Q ss_pred cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc--eeecCCCcEE---EecCC
Q 016134 140 HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT--AWNIESSAEF---SLDGP 212 (394)
Q Consensus 140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~~~~~~---~~~~~ 212 (394)
..+|.++..| .|+++|..++ +.+..+++|...++.++|.. ....+.+|+.||+ +||+++.... ....+
T Consensus 41 ~~vav~lSng----sv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNG----SVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eeEEEEecCC----eEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 3356666666 9999999986 88999999999999999976 5688999999999 5999987654 22223
Q ss_pred C-CcEEEEEEc-CC-EEEEEecC------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeC
Q 016134 213 V-GEVYSMVVA-NE-MLFAGAQD------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWEL 262 (394)
Q Consensus 213 ~-~~v~~l~~~-~~-~l~~~~~~------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~ 262 (394)
. .+..+++.. .. .+++|+.. .|...|++|.|+ +++|++||.||.|.|||+
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 2 355566553 22 45544432 799999999997 689999999999999999
Q ss_pred CCCc---eeEEEcCCCCCcEEEEEcC---CEEEEEeCCCcEEEEEeCCCceeeEeecccC--------CcceEEEEeeEC
Q 016134 263 DTLE---PVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKE--------DNGVLALGGLND 328 (394)
Q Consensus 263 ~~~~---~~~~~~~h~~~v~~l~~~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~s 328 (394)
+.-. .+...-.|...|..+.|.+ +.|.+-+...+..+|+++.+.+...+..... ......+. ..+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~ 274 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHS 274 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-ccc
Confidence 7532 1222234777899999983 3688888999999999988764433322210 01111111 234
Q ss_pred CCCCcEEEEEeC-CCeEEEEECC---CCc---eeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 329 PDGKPVLICACN-DNTVHLYELP---SFM---ERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 329 ~~g~~~l~sgs~-dg~I~iwd~~---~~~---~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
|....+++.++. -+...++-+. ++. .+..+.. ..-|+++.|...+ +++||++||.+.+|..
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 444335544444 5666666443 232 2222222 2348888888777 9999999999999985
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=1.2e-15 Score=134.42 Aligned_cols=246 Identities=17% Similarity=0.194 Sum_probs=173.1
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134 84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG 163 (394)
Q Consensus 84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~ 163 (394)
+..++.|+--..|||-|+.++.+.+ ..+||..+|..+. +.|....+. .++++|..||+|++.+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~------------~~~ghG~sINeik-~~p~~~qlv---ls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSK------------NYRGHGGSINEIK-FHPDRPQLV---LSASKDHSVRLWNIQTD 168 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcc------------ceeccCccchhhh-cCCCCCcEE---EEecCCceEEEEeccCC
Confidence 3345666678899999999888765 5788888999998 888664332 34566779999999887
Q ss_pred ceEEEEe---cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE---ec------CCCCcEEEEEEcCCEEEEE
Q 016134 164 LTMLAKL---EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS---LD------GPVGEVYSMVVANEMLFAG 229 (394)
Q Consensus 164 ~~~~~~l---~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~---~~------~~~~~v~~l~~~~~~l~~~ 229 (394)
.++..+ .||.+.|.++.|++++.+|+|++.|.. +|++...+... .. ....++..... +-..+ .
T Consensus 169 -~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~-~fp~f-s 245 (385)
T KOG1034|consen 169 -VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT-HFPDF-S 245 (385)
T ss_pred -eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc-ccccc-c
Confidence 677766 579999999999999999999999999 69998554321 00 00000000000 00011 1
Q ss_pred ecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC-Cc-------------eeEEEcCCCCCcEEEEEc----CCEEEEE
Q 016134 230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT-LE-------------PVMTLNDHTDAPMSLLCW----DQFLLSC 291 (394)
Q Consensus 230 ~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~-~~-------------~~~~~~~h~~~v~~l~~~----~~~l~s~ 291 (394)
+.+-|...|-|+.|-++++++=|-++.|..|..-. .+ .+.++.-....|+-+.|. .+.||.+
T Consensus 246 t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 55689999999999999999999999999998721 11 123344444556666665 6889999
Q ss_pred eCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 292 SLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
.+.|.|.+||++..++.. ....+.. ........+|+.|+. +|+..++|++|--||..
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 999999999999766532 2222222 222223445799999 88888999999999854
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.5e-14 Score=138.77 Aligned_cols=285 Identities=12% Similarity=0.129 Sum_probs=193.3
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---CCceEEEE
Q 016134 93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---EGLTMLAK 169 (394)
Q Consensus 93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~ 169 (394)
+..+++|+.+... .+.- ......-|...+++++ ++||+.++|++-.+| .|.+|.-- ....-.+.
T Consensus 180 ~~~~~~~~v~~~~--~~~~------~~~~~~~Htf~~t~~~-~spn~~~~Aa~d~dG----rI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 180 MCKIHIYFVPKHT--KHTS------SRDITVHHTFNITCVA-LSPNERYLAAGDSDG----RILVWRDFGSSDDSETCTL 246 (792)
T ss_pred eeeEEEEEecccc--eeec------cchhhhhhcccceeEE-eccccceEEEeccCC----cEEEEeccccccccccceE
Confidence 5667788887643 1110 0012234455678888 999999999888776 89999642 22345677
Q ss_pred ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-------------
Q 016134 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD------------- 232 (394)
Q Consensus 170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~------------- 232 (394)
++-|...|++++|+++|.+|+||+.++. +|.+++++..-+.....+|..+.++|+ ...+...|
T Consensus 247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred EEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 8889999999999999999999999998 599999997777888889999999988 33333333
Q ss_pred ----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-----CC------CCcEEEEE
Q 016134 233 ----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-----HT------DAPMSLLC 283 (394)
Q Consensus 233 ----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----h~------~~v~~l~~ 283 (394)
...+-.+.++++ .+.++-.+..+.|.+||+-+.+.+..+.. +. ..++++..
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 012233445555 35677788899999999988776655531 22 23455544
Q ss_pred c--CCEEEEEeC--------C--CcEEEEEeCCCceeeEee---cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134 284 W--DQFLLSCSL--------D--HTIKVWFATGRGNLEAAY---THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348 (394)
Q Consensus 284 ~--~~~l~s~s~--------D--g~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd 348 (394)
+ +.+++|.-. | -.+|+|-......-..+. ..++.....+.+.. ++.....+++++.||.++||-
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~-~~~rs~~~vta~~dg~~KiW~ 485 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL-NPTRSVRCVTASVDGDFKIWV 485 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe-cCcccceeEEeccCCeEEEEE
Confidence 4 777777632 2 357889765443222222 22222333333322 333333789999999999999
Q ss_pred CCCCceeE-----------EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 349 LPSFMERG-----------RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 349 ~~~~~~~~-----------~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
+.+.+.+. ...+..++++++|+.||.+++.+.|+.|.+||..+
T Consensus 486 ~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 486 FTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 84432211 11246789999999999888888999999999877
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=9.6e-15 Score=126.65 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=151.4
Q ss_pred CCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc---------eeecCCCcEEEecCCCCcEE
Q 016134 150 DECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT---------AWNIESSAEFSLDGPVGEVY 217 (394)
Q Consensus 150 ~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~---------vWd~~~~~~~~~~~~~~~v~ 217 (394)
..+..|++.++..+ .-....|..|.+.|..|+-+|- .+.|+|+-.+-. ||.+...........
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t----- 111 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST----- 111 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-----
Confidence 34457777766433 3345667788999999999994 556666655433 788865433210000
Q ss_pred EEEEcCCEEEEEecC-CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce-eEEEcC-----CCCCcEEEEEc----
Q 016134 218 SMVVANEMLFAGAQD-GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP-VMTLND-----HTDAPMSLLCW---- 284 (394)
Q Consensus 218 ~l~~~~~~l~~~~~~-~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~-----h~~~v~~l~~~---- 284 (394)
.-.++..+ .+-+.|.|+.|. +..+++-. |..|.+|++..... +..+.. +....++-.|+
T Consensus 112 -------lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 112 -------LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred -------hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 00111222 445688899997 34566554 88999999987665 443321 33445555565
Q ss_pred CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eEEEec-CC
Q 016134 285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RGRIFS-KH 362 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~~ 362 (394)
+..+++. .|+++..||+|+..+...+... +........|+|+.+.+|+++++||.|+|||.+.-+. +..+.. .+
T Consensus 184 gnqv~tt-~d~tl~~~D~RT~~~~~sI~dA---Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 184 GNQVATT-SDSTLQFWDLRTMKKNNSIEDA---HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred cceEEEe-CCCcEEEEEccchhhhcchhhh---hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence 4556554 5799999999987666555432 2223334457999999999999999999999997654 444433 78
Q ss_pred cEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 363 EVRVIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 363 ~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
.|+++.|+|.. +|++|+.|..|.+|...
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEecc
Confidence 89999999976 99999999999999754
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=1.6e-12 Score=124.20 Aligned_cols=280 Identities=24% Similarity=0.361 Sum_probs=204.6
Q ss_pred cccCCC-CCcccccccCC-CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134 87 VSSGSE-DRIPHVRNREN-PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL 164 (394)
Q Consensus 87 ~~s~s~-d~~~~~w~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~ 164 (394)
++..+. |+.+++|+.+. .... ....+|...+..+. +.+.+.+++.... .++.+++|+....
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~- 188 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLI------------RTLEGHSESVTSLA-FSPDGKLLASGSS---LDGTIKLWDLRTG- 188 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEE------------EEEecCcccEEEEE-ECCCCCEEEecCC---CCCceEEEEcCCC-
Confidence 344344 99999999997 2211 14567777888888 9998886655433 4669999999875
Q ss_pred eEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecCCCcEEE--ecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQD----- 232 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~~~~~----- 232 (394)
..+..+.+|...|.+++|+|++. .+++++.|+. +||...+.... +..+.... ...|+++ .+++++.+
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEE
Confidence 77888889999999999999998 5556588888 59988776664 55666554 3356665 44434333
Q ss_pred --------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc-C-CEEEEE-
Q 016134 233 --------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW-D-QFLLSC- 291 (394)
Q Consensus 233 --------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~-~~l~s~- 291 (394)
+|...|.++.|. +..+++++.|+.+++||+.+........ .|...+..+.+. . ..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 467889999887 4677779999999999998887766665 787778888884 1 455555
Q ss_pred eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-EeCCCeEEEEECCCCceeEEEecC-CcEEEEEE
Q 016134 292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-ACNDNTVHLYELPSFMERGRIFSK-HEVRVIEI 369 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~ 369 (394)
..|+.+.+|++............ ..... ..+.+ .. .++. +..++.+.+|+............. ..+....+
T Consensus 348 ~~d~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (466)
T COG2319 348 SDDGTIRLWDLRTGKPLKTLEGH---SNVLS--VSFSP-DG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420 (466)
T ss_pred cCCCcEEeeecCCCceeEEecCC---ceEEE--EEECC-CC-CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEE
Confidence 67899999999876622222111 11222 23455 33 4444 788999999999998877777665 78999999
Q ss_pred CCCC-EEEEEeCCCeEEEEeCCC
Q 016134 370 GPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 370 sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.+++ .+++++.++.+++|++..
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 421 SPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEecCCCcEEEEeccC
Confidence 9999 888899999999999764
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5e-15 Score=138.30 Aligned_cols=206 Identities=18% Similarity=0.171 Sum_probs=147.4
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
.+.++|.||++.|++++|+.+|.+|++||.|-. |||.-..+.+... ..+|...|.++.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------~TgHtaNIFsvK 100 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------STGHTANIFSVK 100 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--------------------ecccccceeEEe
Confidence 456788999999999999999999999999987 6998866655321 128888899988
Q ss_pred ec----CCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCC
Q 016134 243 VG----RSRLCSGSMDNTIRVWELDT----------LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 243 ~~----~~~l~sgs~Dg~V~iwd~~~----------~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
|- ..++++|+.|..|+++|+.. .+....+..|...|..++.. ...+.++++||+|+-+|++..
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 84 56799999999999999974 22345566788888888776 478999999999999999974
Q ss_pred ceeeEee-------c-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--------c----------eeEEEe
Q 016134 306 GNLEAAY-------T-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF--------M----------ERGRIF 359 (394)
Q Consensus 306 ~~~~~~~-------~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~--------~----------~~~~~~ 359 (394)
.....-. . ...-.... +...+|...++|++|+.|-..++||.+.. . .+..+.
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk--~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELK--CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred ccCCccccccHHHHHhchhhheee--eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 3221111 0 11111222 23358888889999999999999994321 0 111111
Q ss_pred c-----C-----C---cEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134 360 S-----K-----H---EVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 360 ~-----~-----~---~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~ 393 (394)
. . . .++-+.|+|+| +|++=+. -.|.++|+..+.
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 1 1 1 15678999999 5555444 479999998754
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=7.3e-13 Score=126.47 Aligned_cols=238 Identities=29% Similarity=0.443 Sum_probs=176.4
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC-CeEEEEe-cCCCC-EEEEEeC-CCc
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK-AVSGIAL-PLRSD-KLFSGSR-DGT 197 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~-~V~~l~~-s~~~~-~l~sgs~-Dg~ 197 (394)
..++...+..+. +.+.+.++.... .++.+.+|+...+...+..+.++.. .+..+.+ .+++. .++..+. |+.
T Consensus 61 ~~~~~~~i~~~~-~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 61 LRGHEDSITSIA-FSPDGELLLSGS----SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeccceEEEEE-ECCCCcEEEEec----CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 445666777777 777777776555 4449999999887546777777554 7888888 88887 5555444 766
Q ss_pred --eeecCC-CcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeEE
Q 016134 198 --AWNIES-SAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVMT 270 (394)
Q Consensus 198 --vWd~~~-~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~~ 270 (394)
+|+... .... .+. .|...|..++|. +..+++++. |+.+++|++...+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 136 VKLWDLSTPGKLIRTLE----------------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred EEEEEecCCCeEEEEEe----------------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence 699887 3322 222 566677777776 446777775 99999999999889999
Q ss_pred EcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEE
Q 016134 271 LNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346 (394)
Q Consensus 271 ~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~i 346 (394)
+..|...|.++.+. +. .+++++.|+.|++||........ .+..+.... .. .|++++. ++++++.|+.+++
T Consensus 194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~~~~~~~d~~~~~ 267 (466)
T COG2319 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS----SFSPDGS-LLASGSSDGTIRL 267 (466)
T ss_pred eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE----eECCCCC-EEEEecCCCcEEE
Confidence 99999999999998 44 55555899999999988666665 344444332 22 4688886 7889999999999
Q ss_pred EECCCCce-eEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 347 YELPSFME-RGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 347 wd~~~~~~-~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|++..... ...+ .+...|.++.|.|++ .+++++.|+.+++|++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 99997764 3333 336789999999977 7777888999999987754
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=5.1e-15 Score=140.29 Aligned_cols=224 Identities=19% Similarity=0.260 Sum_probs=155.0
Q ss_pred CCeEEEEEcCCCceE----EEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134 152 CRFLHSWFCGEGLTM----LAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~----~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~ 224 (394)
.|.|-|+++....++ +-.+. ....|+++.|+| |.+.|+.++.||. ||.+..+........ |.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t----------Pe 670 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT----------PE 670 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC----------cc
Confidence 358899998644222 11221 356899999999 7889999999999 699887654321111 11
Q ss_pred EEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134 225 MLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV 299 (394)
Q Consensus 225 ~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v 299 (394)
.+ ...|...|++|.|+ .+.|++++.|-+|++||+++.+....|.+|++.|..++|+ |+.+++.+.||+|++
T Consensus 671 ~~----lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 671 KI----LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred ee----eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 11 11688999999998 5889999999999999999999999999999999999999 899999999999999
Q ss_pred EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCc--eeEEEec--CCcEEEEEECCC
Q 016134 300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFM--ERGRIFS--KHEVRVIEIGPD 372 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~--~~~~~~~--~~~v~~l~~sp~ 372 (394)
|+-+..+.. ++..........-.+.|.-+|..+|++|- ....|.+||.++-. .+..... .-.+.--.+.+|
T Consensus 747 y~Prs~e~p--v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 747 YEPRSREQP--VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred eCCCCCCCc--cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence 998865432 22222222222222335568884444442 24568899877643 2222211 111222234455
Q ss_pred C--EEEEEeCCCeEEEEeCCCC
Q 016134 373 K--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 373 ~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
. +|++|-.|..|.+|++-.+
T Consensus 825 s~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CceEEEecCCCceEEEEEecCC
Confidence 5 8999999999999997654
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=8.2e-14 Score=121.02 Aligned_cols=233 Identities=16% Similarity=0.190 Sum_probs=161.3
Q ss_pred CCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEcCCC---ceEEEEec-----ccCCCeEEEEecC-CCCEEEE
Q 016134 123 SGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFCGEG---LTMLAKLE-----GHEKAVSGIALPL-RSDKLFS 191 (394)
Q Consensus 123 ~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~-----~h~~~V~~l~~s~-~~~~l~s 191 (394)
..|+-.++++. |.|+.. +---...+++ ++|+|.+... .++...|. .+..++++..|+. +-++|.+
T Consensus 93 fd~~YP~tK~~-wiPd~~g~~pdlLATs~D---~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 93 FDHPYPVTKLM-WIPDSKGVYPDLLATSSD---FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCCccceE-ecCCccccCcchhhcccC---eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 35666777777 887652 3211111222 8999998632 22222232 3567899999986 6789999
Q ss_pred EeCCCc--eeecCCCcE--E--EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeC
Q 016134 192 GSRDGT--AWNIESSAE--F--SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWEL 262 (394)
Q Consensus 192 gs~Dg~--vWd~~~~~~--~--~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~ 262 (394)
+|-|-+ |||++++.. + .+. .|..+|..|+|. -+.|++.+.||+||+||+
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLI----------------------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLI----------------------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEE----------------------ecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 999988 899999732 1 222 577777777776 367999999999999999
Q ss_pred CCCceeEEE-c--CCCCCcEEEEEc---CCEEEEEeCC-CcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcE
Q 016134 263 DTLEPVMTL-N--DHTDAPMSLLCW---DQFLLSCSLD-HTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPV 334 (394)
Q Consensus 263 ~~~~~~~~~-~--~h~~~v~~l~~~---~~~l~s~s~D-g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 334 (394)
+..+--..+ + ....+...++|+ .+++|+-..| ..|.+.|+|... .+..+..|...+..+++ .|.....
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW----aPhS~~h 302 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW----APHSSSH 302 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe----cCCCCce
Confidence 986543322 2 224577788887 4678876665 479999999754 56667778776666655 6776668
Q ss_pred EEEEeCCCeEEEEECCCCce------eEEEecCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134 335 LICACNDNTVHLYELPSFME------RGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGV 386 (394)
Q Consensus 335 l~sgs~dg~I~iwd~~~~~~------~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~v 386 (394)
|+++++|..+.|||+.+.-. +..+...++|+.+.|++.. .|+.+.. .++.+
T Consensus 303 ictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99999999999999986422 2233347889999999865 6766654 34443
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6e-13 Score=113.03 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=174.1
Q ss_pred CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134 76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL 155 (394)
Q Consensus 76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i 155 (394)
.+|++ +...++.|+.+.++-+-.+.+-.-. ..-+.+.......++|...+..++ +. +...+. + .||.|
T Consensus 16 qa~sp--~~~~l~agn~~G~iav~sl~sl~s~--sa~~~gk~~iv~eqahdgpiy~~~-f~-d~~Lls-~-----gdG~V 83 (325)
T KOG0649|consen 16 QAISP--SKQYLFAGNLFGDIAVLSLKSLDSG--SAEPPGKLKIVPEQAHDGPIYYLA-FH-DDFLLS-G-----GDGLV 83 (325)
T ss_pred HhhCC--cceEEEEecCCCeEEEEEehhhhcc--ccCCCCCcceeeccccCCCeeeee-ee-hhheee-c-----cCceE
Confidence 35555 6667778888888877665532210 000111122223478888888887 54 222222 1 12488
Q ss_pred EEEEcCCCce-----EEEEec--cc-----CCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEE
Q 016134 156 HSWFCGEGLT-----MLAKLE--GH-----EKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221 (394)
Q Consensus 156 ~iWd~~~~~~-----~~~~l~--~h-----~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~ 221 (394)
+-|......+ .+.+++ -| --.|++|.+.|..+-|+.++.|+.+ ||+++|+..+
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r------------- 150 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR------------- 150 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-------------
Confidence 8887753321 111111 12 2468999999988888888899985 9999998764
Q ss_pred cCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC----------CCCcEEEEEcCCEEE
Q 016134 222 ANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH----------TDAPMSLLCWDQFLL 289 (394)
Q Consensus 222 ~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h----------~~~v~~l~~~~~~l~ 289 (394)
.+.+|++.|.++.-. ...+++|++||++||||.+++++++.++.. ...|.+++.+.+.|+
T Consensus 151 --------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv 222 (325)
T KOG0649|consen 151 --------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV 222 (325)
T ss_pred --------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE
Confidence 233788888888873 678999999999999999999999887542 234677777788887
Q ss_pred EEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEE
Q 016134 290 SCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIE 368 (394)
Q Consensus 290 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~ 368 (394)
.|+ ...+.+|+++..++...+..... ...+ .|..+ .++++++.+.|.-|.+. +.....+.. ....++..
T Consensus 223 CGg-Gp~lslwhLrsse~t~vfpipa~-v~~v----~F~~d---~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s 292 (325)
T KOG0649|consen 223 CGG-GPKLSLWHLRSSESTCVFPIPAR-VHLV----DFVDD---CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSAS 292 (325)
T ss_pred ecC-CCceeEEeccCCCceEEEecccc-eeEe----eeecc---eEEEeccccceeeeeec-cEEEEeccCCccceeeec
Confidence 665 46799999999887776653321 2222 23323 67778888889999875 333333333 44566666
Q ss_pred ECCCC--EEEEEeCCCeEEEE
Q 016134 369 IGPDK--LFFTGDGAGMLGVW 387 (394)
Q Consensus 369 ~sp~~--~l~tgs~Dg~I~vW 387 (394)
|+..- .|-.++..+.+.|+
T Consensus 293 ~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 293 WQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccCCceEEEEecccceeeeee
Confidence 66554 55556667777765
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=3.2e-13 Score=132.14 Aligned_cols=233 Identities=16% Similarity=0.168 Sum_probs=170.0
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEE-------EecCCCCcEEEEEEc
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEF-------SLDGPVGEVYSMVVA 222 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~-------~~~~~~~~v~~l~~~ 222 (394)
..+.||++.+...+...+. -...|++++|+| +..+|+.|..+|. +||+..+... ....|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4799999987766666665 478999999999 5678888999999 5999877652 345688888888886
Q ss_pred CC----EEEEEecC-----------------------C-------CCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC
Q 016134 223 NE----MLFAGAQD-----------------------G-------HTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL 265 (394)
Q Consensus 223 ~~----~l~~~~~~-----------------------~-------h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~ 265 (394)
.+ .+++++.| . -...+++++|. ++.++.|+.+|.|.-=+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 55 47777777 1 12367778885 678999999999887333221
Q ss_pred --------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeC-CCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134 266 --------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFAT-GRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333 (394)
Q Consensus 266 --------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 333 (394)
+.+..+..|.++|+++.++ .++|++++ |.+++||... ...++..+..+.. ....++|+|....
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~----~v~~vaWSptrpa 455 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD----YVTDVAWSPTRPA 455 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc----eeeeeEEcCcCce
Confidence 1233455688999999988 46666666 9999999876 4334433332222 2334567998887
Q ss_pred EEEEEeCCCeEEEEECCCCcee--EEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 334 VLICACNDNTVHLYELPSFMER--GRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~~~~~~--~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+++++..||.|.|||+...... ..... ....+.+.|++++ .|+.|...|.+.+|++.+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999999999765332 22222 4456788888888 999999999999999964
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.3e-14 Score=125.96 Aligned_cols=145 Identities=13% Similarity=0.290 Sum_probs=114.6
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cce
Q 016134 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGV 320 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~ 320 (394)
..++++...|.|++||..+++.+..|+++...+..+.|. +..+.+|+.||+|++||+|.......+.....+ ..-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 568889999999999999999999999999999888887 468999999999999999987666555544433 222
Q ss_pred EEEEeeECCCCCcEEEEEeC----CCeEEEEECCCCce-eEEEec--CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 321 LALGGLNDPDGKPVLICACN----DNTVHLYELPSFME-RGRIFS--KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sgs~----dg~I~iwd~~~~~~-~~~~~~--~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
.++. ..-.+. ++++|.+ +-.|.+||++..+. +..+.. ...|+++.|+|.. +|++||.||.|.|||+..
T Consensus 121 ~~ld--~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLD--LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEee--ccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 3331 122344 7777743 67899999998876 555543 6679999999988 999999999999999986
Q ss_pred CC
Q 016134 392 KP 393 (394)
Q Consensus 392 ~~ 393 (394)
++
T Consensus 198 d~ 199 (376)
T KOG1188|consen 198 DN 199 (376)
T ss_pred Cc
Confidence 54
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=2.6e-12 Score=121.16 Aligned_cols=266 Identities=13% Similarity=0.113 Sum_probs=156.0
Q ss_pred cCCCCCcccccccCC-CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-C-ce
Q 016134 89 SGSEDRIPHVRNREN-PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-G-LT 165 (394)
Q Consensus 89 s~s~d~~~~~w~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~-~~ 165 (394)
+.+.|+.|++|++++ +...-.. .... ......+. ++|++.++..++. .++.|.+|++.. + .+
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~---------~~~~--~~~~~~l~-~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~ 71 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQ---------VVDV--PGQVQPMV-ISPDKRHLYVGVR---PEFRVLSYRIADDGALT 71 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeee---------EEec--CCCCccEE-ECCCCCEEEEEEC---CCCcEEEEEECCCCceE
Confidence 346689999999974 2221111 0111 11233445 8888888755433 345889999863 3 22
Q ss_pred EEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL 241 (394)
Q Consensus 166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l 241 (394)
.+.... ..+....++|+|++++|++++. ++. +|++++.... .. +.. . .+.....++
T Consensus 72 ~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~------------~-~~~~~~~~~ 131 (330)
T PRK11028 72 FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI------------I-EGLEGCHSA 131 (330)
T ss_pred Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee------------c-cCCCcccEe
Confidence 233322 3345678999999999998875 443 6888643211 10 000 0 111223445
Q ss_pred Eec--CCeE-EEEeCCCeEEEEeCCCCceeE-------EEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeCCC--c
Q 016134 242 AVG--RSRL-CSGSMDNTIRVWELDTLEPVM-------TLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFATGR--G 306 (394)
Q Consensus 242 ~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~-------~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~~--~ 306 (394)
+++ ++++ ++...++.|.+||+++...+. .+. .......+.|+ +++++++.+ +++|.+||+... +
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 565 4565 455567999999997633221 111 12345678887 678877776 899999999742 2
Q ss_pred --eeeEeecccC--CcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCc----eeEEEecCCcEEEEEECCCC-EEE
Q 016134 307 --NLEAAYTHKE--DNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFM----ERGRIFSKHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 307 --~~~~~~~~~~--~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~sp~~-~l~ 376 (394)
.+..+..... ........+.++|+++ +|+++ ..++.|.+|++.... .+..+........+.++|+| +|+
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGR-HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCC-EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence 2222221111 1111222345799999 55555 457899999996543 22222223456789999999 666
Q ss_pred EEe-CCCeEEEEeCCC
Q 016134 377 TGD-GAGMLGVWKLLA 391 (394)
Q Consensus 377 tgs-~Dg~I~vWd~~~ 391 (394)
++. .++.|.+|+++.
T Consensus 290 va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 290 AAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEccCCcEEEEEEcC
Confidence 555 489999998853
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=121.61 Aligned_cols=220 Identities=19% Similarity=0.224 Sum_probs=148.7
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG- 161 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~- 161 (394)
+....++.|.|+.||+||.-++++.. |.++.... ..-.+..++. |+|++.+|..+-. ++|||+|+.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lra---Sy~~ydh~----de~taAhsL~-Fs~DGeqlfaGyk-----rcirvFdt~R 188 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRA---SYRAYDHQ----DEYTAAHSLQ-FSPDGEQLFAGYK-----RCIRVFDTSR 188 (406)
T ss_pred ccceeeeccccCceeeeecccccccc---chhhhhhH----HhhhhheeEE-ecCCCCeEeeccc-----ceEEEeeccC
Confidence 33355666779999999999988642 21111111 1113456777 9999999875543 389999993
Q ss_pred CC-ceEEEEec-----ccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134 162 EG-LTMLAKLE-----GHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD 232 (394)
Q Consensus 162 ~~-~~~~~~l~-----~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~ 232 (394)
.+ ...+.... +..+-|.+++|+|- .+.++.++.-.. |+.......+.+ ..
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---------------------lg 247 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---------------------LG 247 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---------------------ec
Confidence 33 12222222 34788999999994 557888877666 566555554421 11
Q ss_pred CCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCC-CceeEEEcCCCC-CcEEEEEc----CCEEEEEeCCCcEEEEEeC
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDT-LEPVMTLNDHTD-APMSLLCW----DQFLLSCSLDHTIKVWFAT 303 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~-~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~Dg~i~vwd~~ 303 (394)
+|.+.|+-|.|. ++.|++|+. |-.|..||++. ..++..+..|.. .-..|.|+ +++|++|+.||.|++||+.
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 778888888886 788888885 78999999986 557778887776 44456665 8899999999999999998
Q ss_pred C-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134 304 G-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341 (394)
Q Consensus 304 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d 341 (394)
. +..+..+..+......+++ +|--. ++++++-.
T Consensus 328 ~~gn~~sv~~~~sd~vNgvsl----nP~mp-ilatssGq 361 (406)
T KOG2919|consen 328 DLGNEVSVTGNYSDTVNGVSL----NPIMP-ILATSSGQ 361 (406)
T ss_pred CCCCcccccccccccccceec----Ccccc-eeeeccCc
Confidence 7 4435555555544444444 77755 78877643
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=1.9e-13 Score=133.72 Aligned_cols=234 Identities=19% Similarity=0.266 Sum_probs=166.3
Q ss_pred cccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCce-----EEE
Q 016134 95 IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGLT-----MLA 168 (394)
Q Consensus 95 ~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----~~~ 168 (394)
.+-+||+..+.. +. -..-.+..|.++. ++| ....+++++++| .|-+||+..+.. .-.
T Consensus 223 ~~~vW~~~~p~~--Pe----------~~~~~~s~v~~~~-f~p~~p~ll~gG~y~G----qV~lWD~~~~~~~~~s~ls~ 285 (555)
T KOG1587|consen 223 VLLVWSLKNPNT--PE----------LVLESPSEVTCLK-FCPFDPNLLAGGCYNG----QVVLWDLRKGSDTPPSGLSA 285 (555)
T ss_pred eEEEEecCCCCC--ce----------EEEecCCceeEEE-eccCCcceEEeeccCc----eEEEEEccCCCCCCCccccc
Confidence 678899997731 11 1222234677777 666 556678888888 999999975533 122
Q ss_pred EecccCCCeEEEEecCCC--CEEEEEeCCCce--eecCCCcEE-------Eec------CCCCcEEEEEEcCC---EEEE
Q 016134 169 KLEGHEKAVSGIALPLRS--DKLFSGSRDGTA--WNIESSAEF-------SLD------GPVGEVYSMVVANE---MLFA 228 (394)
Q Consensus 169 ~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~v--Wd~~~~~~~-------~~~------~~~~~v~~l~~~~~---~l~~ 228 (394)
....|..+|+.+.|-.+. .-|++++.||.| |+++.-... ... .....+..+.|.+. .+++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence 334689999999996543 559999999995 987653331 011 23456788888765 7777
Q ss_pred EecC--------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCc
Q 016134 229 GAQD--------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAP 278 (394)
Q Consensus 229 ~~~~--------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v 278 (394)
|+.+ .|.+.|.++.++ ...+++++ |-+|+||... ...++..+..+...|
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV 444 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence 7766 467788888887 45566666 9999999987 677888888888889
Q ss_pred EEEEEc---CCEEEEEeCCCcEEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 279 MSLLCW---DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 279 ~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
++++|+ ...|+++..||.|.+||+..... +...... ..++ ....+++.|+ +|++|...|++++|++..
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~~l-~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SPAL-TRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc---cccc-ceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 999999 56899999999999999975432 2222222 1111 1234577788 999999999999999964
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.4e-13 Score=121.46 Aligned_cols=248 Identities=13% Similarity=0.100 Sum_probs=174.1
Q ss_pred cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-----ceEEEEecc-cCCCeEEEEecCCCCEEEEEeC
Q 016134 121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-----LTMLAKLEG-HEKAVSGIALPLRSDKLFSGSR 194 (394)
Q Consensus 121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-----~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~ 194 (394)
..++|...|..+. |+-.++||++ |+.|..+++|.++.. .+++..... |...|.|++|....++|++|..
T Consensus 51 D~~~H~GCiNAlq-FS~N~~~L~S----GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 51 DVREHTGCINALQ-FSHNDRFLAS----GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhccccceee-eccCCeEEee----cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 6789999999999 9999999985 455669999998522 255555543 5689999999999999999999
Q ss_pred CCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-ee-
Q 016134 195 DGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PV- 268 (394)
Q Consensus 195 Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~- 268 (394)
+++| -|+++.+.+.+..+. ...+.|..+..+ .+.|++.+.++.|.+||.+..+ .+
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~-------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANEN-------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred cceeEeeecccceeeeeeccc-------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 9994 899988877544333 223455555555 5789999999999999998754 22
Q ss_pred -EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce---EEEEeeECCCCCcEEEEEeCC
Q 016134 269 -MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV---LALGGLNDPDGKPVLICACND 341 (394)
Q Consensus 269 -~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~g~~~l~sgs~d 341 (394)
..+........++.|+ ..+|++.+..+-+-+||++.+......+........ --+...|+|.|. .|++--.-
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~ 265 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRG 265 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhcc
Confidence 2223345567888888 678999999999999999875432211111110111 113345899998 55544444
Q ss_pred CeEEEEECCCCcee-EEEec-------CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 342 NTVHLYELPSFMER-GRIFS-------KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 342 g~I~iwd~~~~~~~-~~~~~-------~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
..-.+||+-+..+. .++.+ ...+.+++|..|..+++|+.+-.|.+|.+...+
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 44556788774433 33332 234778888877799999999999999987543
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=4.8e-13 Score=121.11 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=166.9
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC----
Q 016134 86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---- 161 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---- 161 (394)
.++||++|..+|+|-++.....+. ...+.....+..|.++|..+. |+|++..+|++..+| .|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~aVN~vR-f~p~gelLASg~D~g----~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTRAVNVVR-FSPDGELLASGGDGG----EVFLWKQGDVRI 99 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcceeEEEE-EcCCcCeeeecCCCc----eEEEEEecCcCC
Confidence 679999999999999997765331 123444456778999999999 999999999777666 99999876
Q ss_pred ----C-------CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--E
Q 016134 162 ----E-------GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--M 225 (394)
Q Consensus 162 ----~-------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~ 225 (394)
+ .+...+.+.+|...|..++|+|++.++++++.|.. +||+..++.. .+..|...+..++|.|- .
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 2 14567788899999999999999999999999998 6999999987 55678888888888764 3
Q ss_pred EEEEecCCC----------------------------CCCEE-------------EEEec--CCeEEEEeC----C----
Q 016134 226 LFAGAQDGH----------------------------TRPVT-------------CLAVG--RSRLCSGSM----D---- 254 (394)
Q Consensus 226 l~~~~~~~h----------------------------~~~V~-------------~l~~~--~~~l~sgs~----D---- 254 (394)
+++-+.+.| .+.+. .++|. +.+|++.+. .
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 333222210 01111 11222 333433221 1
Q ss_pred -CeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--------------------CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134 255 -NTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--------------------DQFLLSCSLDHTIKVWFATGRGNLEAAY 312 (394)
Q Consensus 255 -g~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--------------------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 312 (394)
++.++|+-+. .++...+.....+...+.|+ .-.++.+. .+.|.+||..+..++....
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~ 338 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD 338 (434)
T ss_pred eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEe
Confidence 1223333221 22333344333444444433 11344444 4679999988766655443
Q ss_pred c-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134 313 T-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME 354 (394)
Q Consensus 313 ~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~ 354 (394)
. |-...+ ..+|+++|. +|+..+.||...+-.++..++
T Consensus 339 nihy~~iT----Diaws~dg~-~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 339 NIHYSAIT----DIAWSDDGS-VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeeec----ceeecCCCc-EEEEeccCCceEEEEEcchhc
Confidence 3 222222 345799999 888889999988887776543
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1e-14 Score=142.07 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=150.0
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
+.++.+.+|..+|+|..|...|.++++|+.|.. ||.++++.++. +..||...|+.++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------s~rGhs~ditdla 239 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---------------------SCRGHSGDITDLA 239 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---------------------cCCCCccccchhc
Confidence 456677899999999999999999999999998 79999988762 2237888888888
Q ss_pred ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeC-CCce------------
Q 016134 243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFAT-GRGN------------ 307 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~-~~~~------------ 307 (394)
.+ .-+++++|.|..|++|-+..+.++..+.+|++.|++++|+... +.+.||++++||.+ ....
T Consensus 240 vs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 240 VSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred cchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCccccc
Confidence 86 4568999999999999999999999999999999999998543 77889999999987 1100
Q ss_pred -eeEeecc---------cCC-------------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCc
Q 016134 308 -LEAAYTH---------KED-------------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHE 363 (394)
Q Consensus 308 -~~~~~~~---------~~~-------------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~ 363 (394)
...+... ... .....+.+.++.+-..+.+++-.+-.+.+|++.++.+...+.. .+.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 0000000 000 0000000111112222445555566788899888877665544 778
Q ss_pred EEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 364 VRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 364 v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
+..+.++|-+ ...+++.||...|||+-.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 9999999988 778899999999999854
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.1e-14 Score=132.17 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=155.3
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--
Q 016134 84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-- 161 (394)
Q Consensus 84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-- 161 (394)
..-+++++.|.++++||+... ++...-..-+.=..++|...|-++. ..+.+.. |++|+-|++|+.|++.
T Consensus 306 ep~lit~sed~~lk~WnLqk~----~~s~~~~~epi~tfraH~gPVl~v~-v~~n~~~----~ysgg~Dg~I~~w~~p~n 376 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKA----KKSAEKDVEPILTFRAHEGPVLCVV-VPSNGEH----CYSGGIDGTIRCWNLPPN 376 (577)
T ss_pred CCeEEEeccccchhhhhhccc----CCccccceeeeEEEecccCceEEEE-ecCCceE----EEeeccCceeeeeccCCC
Confidence 346789999999999999531 1111112222234679999998887 6665555 5556666699999553
Q ss_pred ----CC---ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC--CCCcEEEEEEcCC------
Q 016134 162 ----EG---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG--PVGEVYSMVVANE------ 224 (394)
Q Consensus 162 ----~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~--~~~~v~~l~~~~~------ 224 (394)
+. ..+...+.||++.|+.+++++...+|++++.||++ |+........+.. ..+.-..+.+...
T Consensus 377 ~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 377 QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhh
Confidence 22 25667889999999999999999999999999994 8876655522211 1111222222111
Q ss_pred ------------------EEEEEecC-C---CCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134 225 ------------------MLFAGAQD-G---HTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280 (394)
Q Consensus 225 ------------------~l~~~~~~-~---h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~ 280 (394)
+++..+.. . -...+.-+.++ ..+.+++..|+.|+++|..+++++.....|...+++
T Consensus 457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 11111110 1 12345555555 568999999999999999999999999999999999
Q ss_pred EEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134 281 LLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH 314 (394)
Q Consensus 281 l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 314 (394)
+++. +.+|++++.|+.+++|.+....++.....|
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 9998 789999999999999998776666554444
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.7e-13 Score=131.85 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=165.4
Q ss_pred ccccCCCCCcccccccCCCCC-CCCCCCCCCccccccCCCCc--cceeeeccccc-cccccCCCeecCCCCCeEEEEEcC
Q 016134 86 WVSSGSEDRIPHVRNRENPGY-TGPKNSSSASSTVSDESGDK--STSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCG 161 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~~~~~~~-~~~~~s~~~~~~~~~~~g~~--~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~ 161 (394)
.++++-+...++|||-+.+.. ++ +..|.. ..|+.+.+.+. +...+.+++.+ |.||||+--
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~~l~~------------F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d----GvIRIwk~y 1141 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNG------------FDNGAFPDTRVSDLELINEQDDALLLTASSD----GVIRIWKDY 1141 (1387)
T ss_pred eeEEcCCcceEEEEecccCceecc------------ccCCCCCCCccceeeeecccchhheeeeccC----ceEEEeccc
Confidence 445544467889999887663 22 222221 23444443333 33344444444 499999752
Q ss_pred ----CCceEEEEeccc-------CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134 162 ----EGLTMLAKLEGH-------EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFA 228 (394)
Q Consensus 162 ----~~~~~~~~l~~h-------~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 228 (394)
...+++....+- .+.=.-+.|.....+|++++.-.. |||.+......-...
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----------------
Confidence 223444433321 111133567665555555554444 799987766521111
Q ss_pred EecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCC--cEEEEEc--C-CEEEEEeCCCcE
Q 016134 229 GAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDA--PMSLLCW--D-QFLLSCSLDHTI 297 (394)
Q Consensus 229 ~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~--v~~l~~~--~-~~l~s~s~Dg~i 297 (394)
+-..-|+++.-+ ++.++.|..||.|++||.+... .+...+.|+.. |..+.+. | ..|++++.||.|
T Consensus 1206 ----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1206 ----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ----CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 223344555443 7899999999999999997633 46667788887 8888887 2 369999999999
Q ss_pred EEEEeCCCcee--eEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-------CCcEEEE
Q 016134 298 KVWFATGRGNL--EAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-------KHEVRVI 367 (394)
Q Consensus 298 ~vwd~~~~~~~--~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~v~~l 367 (394)
++||+|..... ..+..+.+.. ...++. .++... ++|+|+. +.|+||++........... ...+.|+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~--VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALT--VHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeee--eccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCccee
Confidence 99999984221 1222222111 123332 256665 9999988 9999999875432221111 4468999
Q ss_pred EECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 368 EIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 368 ~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+|+|-. ++|.|+.|..|.||.-..
T Consensus 1358 ~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eecchhHhhhhccCCceEEEeecCC
Confidence 999999 999999999999998654
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=8.4e-11 Score=105.67 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=144.8
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIES 203 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~ 203 (394)
++.... |+.+...+..+..+| .+++..+.-.+.-.. ....-.|--+-|+ ..++|..+.+.- +.++..
T Consensus 7 ti~~~~-~Nqd~~~lsvGs~~G-----yk~~~~~~~~k~~~~-~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIG-FNQDSTLLSVGSKDG-----YKIFSCSPFEKCFSK-DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeee-eccceeEEEccCCCc-----eeEEecCchHHhhcc-cCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence 333344 566666666666555 355555433221111 1112234444444 345555554332 566666
Q ss_pred CcEEEecCCCCcEEEEEEcCCEEEEEecC--------------------CCCCCEEEEEec--CCeEEEE-e-CCCeEEE
Q 016134 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSG-S-MDNTIRV 259 (394)
Q Consensus 204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sg-s-~Dg~V~i 259 (394)
+..+.......+|.+|.+..+.|++.-.+ .+...+.++.++ +.+++-= + ..|.|.|
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 66655555566777777777766655544 355567777776 3355542 2 3689999
Q ss_pred EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEE
Q 016134 260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHT-IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336 (394)
Q Consensus 260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~ 336 (394)
||..+.+++..+..|.+.+.+++|+ |.+|||+|+.|+ |||+.+.+++.+..++.......+.++ +|+|+++ +|+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL--~Fs~ds~-~L~ 234 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL--SFSPDSQ-FLA 234 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE--EECCCCC-eEE
Confidence 9999999999999999999999999 899999999886 799999999999888876655555544 5899999 999
Q ss_pred EEeCCCeEEEEECCC
Q 016134 337 CACNDNTVHLYELPS 351 (394)
Q Consensus 337 sgs~dg~I~iwd~~~ 351 (394)
+.+..++|+||.+..
T Consensus 235 ~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCCeEEEEEecc
Confidence 999999999998764
No 192
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=127.06 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=189.1
Q ss_pred CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCcee
Q 016134 122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGTAW 199 (394)
Q Consensus 122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~vW 199 (394)
+.+|+..|..|. |+..+.++++ |+.|..|.+||.......+.-..||...|..-.|-| +...|++++.||.+-
T Consensus 138 L~~H~GcVntV~-FN~~Gd~l~S----gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 138 LNKHKGCVNTVH-FNQRGDVLAS----GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred ccCCCCccceee-ecccCceeec----cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 458888999998 8888888875 455669999999888566666678999999999987 457899999999941
Q ss_pred ---ecCCCcE---EEecCCCCcEEEEEEcCC---EEEEEecC---------------------CCCC---CEEEEEec--
Q 016134 200 ---NIESSAE---FSLDGPVGEVYSMVVANE---MLFAGAQD---------------------GHTR---PVTCLAVG-- 244 (394)
Q Consensus 200 ---d~~~~~~---~~~~~~~~~v~~l~~~~~---~l~~~~~~---------------------~h~~---~V~~l~~~-- 244 (394)
-+.++.+ ..+..|.++|.-++..|+ .+++++.| .+.. ...+++.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 1223332 256678888888888766 55555555 2333 45566665
Q ss_pred -CCeEEEEeCCCeEEEEeCCCCce------eEEEc------CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc---
Q 016134 245 -RSRLCSGSMDNTIRVWELDTLEP------VMTLN------DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG--- 306 (394)
Q Consensus 245 -~~~l~sgs~Dg~V~iwd~~~~~~------~~~~~------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--- 306 (394)
.+++++++.|..+++||.+.... +.++- .....|++++|+ +.-|++.-.|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 46899999999999999875321 23332 223468999998 4455555567788998533211
Q ss_pred ---------ee-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-E
Q 016134 307 ---------NL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-L 374 (394)
Q Consensus 307 ---------~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~ 374 (394)
.+ +.+++|....++-.+. .|-|... ++++|++-|.|.||+-.+++.+..+.. .+-|+||.-+|-- .
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVN-FfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVN-FFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCcchhhccchhhcccccccccceee-eccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 11 1244555444433332 3677777 999999999999999999988887776 5679999999988 9
Q ss_pred EEEEeCCCeEEEEeCCC
Q 016134 375 FFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 375 l~tgs~Dg~I~vWd~~~ 391 (394)
||+++-|..|+||--.+
T Consensus 451 LAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLT 467 (559)
T ss_pred hhccCCccceeeecCCc
Confidence 99999999999997533
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.9e-12 Score=123.39 Aligned_cols=205 Identities=17% Similarity=0.085 Sum_probs=134.8
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEM 225 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~ 225 (394)
.+..|.+||.... . .+.+..|...|...+|+|||++|+..+.+.. +||+++++...+....
T Consensus 182 ~~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~------------ 247 (429)
T PRK01742 182 QPYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR------------ 247 (429)
T ss_pred ceEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC------------
Confidence 3568999998654 3 4567788889999999999999998876542 6898887654332111
Q ss_pred EEEEecCCCCCCEEEEEec--CCeEEEE-eCCCeEEEE--eCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcE
Q 016134 226 LFAGAQDGHTRPVTCLAVG--RSRLCSG-SMDNTIRVW--ELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTI 297 (394)
Q Consensus 226 l~~~~~~~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iw--d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i 297 (394)
+|. ..++|+ ++.|+.+ +.++.+.|| |+.+++ ...+..+...+....|+ ++.|+..+ .++..
T Consensus 248 -------g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 248 -------GHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred -------Ccc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence 222 234565 5566654 467766555 666655 44566666677788888 66666554 57888
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEE
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFF 376 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~ 376 (394)
.||++...........+.. ....|+|+|+ .|+..+.++ +.+||+.++...... .......+.|+||+ +|+
T Consensus 317 ~I~~~~~~~~~~~~l~~~~------~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~~~~~~~~sPdG~~i~ 387 (429)
T PRK01742 317 QVYRMSASGGGASLVGGRG------YSAQISADGK-TLVMINGDN-VVKQDLTSGSTEVLS-STFLDESPSISPNGIMII 387 (429)
T ss_pred eEEEEECCCCCeEEecCCC------CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeEEec-CCCCCCCceECCCCCEEE
Confidence 9998754322222222221 1234699999 666666554 666999887654322 22234567899999 888
Q ss_pred EEeCCCeEEEEeC
Q 016134 377 TGDGAGMLGVWKL 389 (394)
Q Consensus 377 tgs~Dg~I~vWd~ 389 (394)
.++.++.+.+|++
T Consensus 388 ~~s~~g~~~~l~~ 400 (429)
T PRK01742 388 YSSTQGLGKVLQL 400 (429)
T ss_pred EEEcCCCceEEEE
Confidence 8888998888875
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.2e-12 Score=127.86 Aligned_cols=218 Identities=14% Similarity=0.218 Sum_probs=147.6
Q ss_pred eEEEEEcCCCceEEEEeccc---CCCeEEEEecC--CCCEEEEEeCCCc--eeecC-CC-cEEEecCCCCcEEEEEEcCC
Q 016134 154 FLHSWFCGEGLTMLAKLEGH---EKAVSGIALPL--RSDKLFSGSRDGT--AWNIE-SS-AEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h---~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~-~~-~~~~~~~~~~~v~~l~~~~~ 224 (394)
.|+|||.+.+ +.+..|..+ ...|+.+.+-. |..+|++|+.||. ||+-- .+ +..
T Consensus 1087 ~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~----------------- 1148 (1387)
T KOG1517|consen 1087 RIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP----------------- 1148 (1387)
T ss_pred eEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc-----------------
Confidence 8999999887 555656544 46799999854 5678999999999 57632 21 111
Q ss_pred EEEEEecC------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc---CCEEEEEe
Q 016134 225 MLFAGAQD------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW---DQFLLSCS 292 (394)
Q Consensus 225 ~l~~~~~~------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~---~~~l~s~s 292 (394)
.++++... +-.+.-.-+.|. ..+|++++.-..|+|||....++++.+.. -...|+++..+ ++.+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 11111110 111111234564 45566666688999999998777777753 34567888776 79999999
Q ss_pred CCCcEEEEEeCCCce---eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE--Ee-c---CCc
Q 016134 293 LDHTIKVWFATGRGN---LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR--IF-S---KHE 363 (394)
Q Consensus 293 ~Dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~--~~-~---~~~ 363 (394)
.||.|++||.|.... +.....|.....++-+. +.+.|-.-|++|+.||.|++||++....... +. + ...
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s--lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS--LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEE--eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 999999999987543 44455555543444433 4555543599999999999999998422211 11 1 234
Q ss_pred EEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 364 VRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 364 v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++++..+++. .+|+|+. +.|+||++.-+
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 9999999998 9999988 99999998643
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=6.3e-13 Score=119.76 Aligned_cols=208 Identities=11% Similarity=0.118 Sum_probs=145.5
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG 244 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~ 244 (394)
.+.+.+|.+.|++|.|+.++++|++|+.|.. ||+++.....+... +|.- ....|...|.||+|+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K---PI~~-----------~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK---PIGV-----------MEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC---Ccee-----------ccCccccceEEEEEc
Confidence 4556789999999999999999999999987 79986432211110 1100 111577899999998
Q ss_pred --CCeEEEEeCCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCC
Q 016134 245 --RSRLCSGSMDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKED 317 (394)
Q Consensus 245 --~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~ 317 (394)
..++++|..+++|.+.|+++.+.+..+.. ..+.|+.+..+ .+.|++.+.++.|.+||.+... ....+.....+
T Consensus 115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 56799999999999999999888776642 23489988887 7899999999999999998765 33333222222
Q ss_pred cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-EEEe------c-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134 318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER-GRIF------S-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK 388 (394)
Q Consensus 318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~-~~~~------~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd 388 (394)
... ..+.|+|....+|++.+..+-+-+||.+..... .... . ...-.++.|+|+| .|++--.-..-.+||
T Consensus 195 ~~F--~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 195 KNF--YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred ccc--eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 222 234589988889999999999999999875322 1111 1 1223567899988 555544434444555
Q ss_pred CC
Q 016134 389 LL 390 (394)
Q Consensus 389 ~~ 390 (394)
+.
T Consensus 273 ~~ 274 (609)
T KOG4227|consen 273 FI 274 (609)
T ss_pred ee
Confidence 43
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.48 E-value=1.1e-12 Score=125.24 Aligned_cols=246 Identities=13% Similarity=0.159 Sum_probs=180.2
Q ss_pred CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134 74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR 153 (394)
Q Consensus 74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~ 153 (394)
...++.| |++.++-+.++| +-++|.+.|..-. ...||+.+|.+|+ ++-+|..+|++..+.
T Consensus 16 ~d~afkP--DGsqL~lAAg~r-lliyD~ndG~llq------------tLKgHKDtVycVA-ys~dGkrFASG~aDK---- 75 (1081)
T KOG1538|consen 16 NDIAFKP--DGTQLILAAGSR-LLVYDTSDGTLLQ------------PLKGHKDTVYCVA-YAKDGKRFASGSADK---- 75 (1081)
T ss_pred heeEECC--CCceEEEecCCE-EEEEeCCCccccc------------ccccccceEEEEE-EccCCceeccCCCce----
Confidence 4455566 888888766554 6689988887643 6789999999999 999999998766555
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEe
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGA 230 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~ 230 (394)
.|.+|+..-... .. -.|.+.|.|+.|+|-.+.|+|++-... +|..+..... .......+.+.+|.+| +++.|.
T Consensus 76 ~VI~W~~klEG~--Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 76 SVIIWTSKLEGI--LK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eEEEecccccce--ee-eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEec
Confidence 999998743312 12 269999999999999999999997665 8987655432 2233446777888877 666665
Q ss_pred cC--------------------CCCCCEEEEEec-------CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134 231 QD--------------------GHTRPVTCLAVG-------RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 231 ~~--------------------~h~~~V~~l~~~-------~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 283 (394)
.+ +...+|++++|+ .+.+++.....++..|.+. |+.+..-+.-.-...|+.+
T Consensus 152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhee
Confidence 54 567899999996 2568888889999999886 5555433444445677877
Q ss_pred c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
. |.+++.|+.|+.+++|- +.+-.+.+.-... . ..+.+...|+++ .++.|+.||+|..|++-
T Consensus 231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D--~--WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD--S--WIWTVQAKPNSQ-YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCCceEEEe-ecCeEEeeccccc--e--eEEEEEEccCCc-eEEEEEccCeeehhhhH
Confidence 7 89999999999999995 3444444433322 2 233344589999 88999999999999864
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=122.23 Aligned_cols=253 Identities=20% Similarity=0.265 Sum_probs=184.5
Q ss_pred eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC---CEEEEEeCCCc--eeecCC
Q 016134 129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS---DKLFSGSRDGT--AWNIES 203 (394)
Q Consensus 129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~sgs~Dg~--vWd~~~ 203 (394)
++..++++++..++...+.+ +|.|+...++ +++..+.+|..+++.+.+.|.. .++++++.||. +||...
T Consensus 18 ~~~~avfSnD~k~l~~~~~~-----~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCTGN-----FVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred eecccccccCCcEEEEeeCC-----EEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 33444588888888755444 8999999998 8888999999999999998754 47889999999 599999
Q ss_pred CcEEEecCCCCcEEEEEEcCC------EEEEEecC---------------------------------------------
Q 016134 204 SAEFSLDGPVGEVYSMVVANE------MLFAGAQD--------------------------------------------- 232 (394)
Q Consensus 204 ~~~~~~~~~~~~v~~l~~~~~------~l~~~~~~--------------------------------------------- 232 (394)
+..++......++..+.+.+. .+.....+
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 888755544444444444221 11111111
Q ss_pred -------------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC--C--ceeEEEcCCC
Q 016134 233 -------------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT--L--EPVMTLNDHT 275 (394)
Q Consensus 233 -------------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~--~--~~~~~~~~h~ 275 (394)
.|...+++.+++ +++++++..||.|.+|.--. . .....+.=|.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 466667888887 78899999999999995322 1 2345566799
Q ss_pred CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
..|+++.|+ |.+|++|+..+.+.+|.+.+++ .+-+..... .+ +...++||+. +.+....|+.|.+....+..
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I--~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PI--LHIVVSPDSD-LYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--ee--EEEEEcCCCC-eEEEEecCceEEEEeccchh
Confidence 999999999 8999999999999999998876 222222222 22 2334689999 66667789999999988776
Q ss_pred eeEEEec------------CCcEEEEEECCC-CEEEEEeCCCeEEEEeCCCCC
Q 016134 354 ERGRIFS------------KHEVRVIEIGPD-KLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 354 ~~~~~~~------------~~~v~~l~~sp~-~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
....+.+ ..-.+.++++|. +.++..+..|.|.+||+.++.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 6655544 122678899994 488888899999999987653
No 198
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=2.6e-12 Score=114.22 Aligned_cols=287 Identities=20% Similarity=0.233 Sum_probs=177.1
Q ss_pred ccccCCCCCcccccc-cCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---
Q 016134 86 WVSSGSEDRIPHVRN-RENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--- 161 (394)
Q Consensus 86 ~~~s~s~d~~~~~w~-~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--- 161 (394)
-+++.|.|+++|||- ++.+.+.... ..-.+...+... +++...-|..+...| ++.-+.+.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI-----------~~~mP~~~~~~~-y~~e~~~L~vg~~ng----tvtefs~sedf 101 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSI-----------YHYMPSPCSAME-YVSESRRLYVGQDNG----TVTEFALSEDF 101 (404)
T ss_pred CeEEccccceeeeEEeccccccCchh-----------hhhCCCCceEee-eeccceEEEEEEecc----eEEEEEhhhhh
Confidence 357889999999996 5556553211 111122333333 444433343333333 44444432
Q ss_pred CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce-eecC-CCc-------------------EEEecCCCCcEEEEE
Q 016134 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-WNIE-SSA-------------------EFSLDGPVGEVYSMV 220 (394)
Q Consensus 162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v-Wd~~-~~~-------------------~~~~~~~~~~v~~l~ 220 (394)
+.....+.+..|...|..+-|+-..+.+++.+.|..+ |... .+. ....-.+.++|..+.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK 181 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence 2235667778899999999999999999999999873 5432 111 112234667777777
Q ss_pred EcCC-EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCC
Q 016134 221 VANE-MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLD 294 (394)
Q Consensus 221 ~~~~-~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~D 294 (394)
+-+. .-..-...+|...+.+++|+ ..+|++|..|..|.+||+--.+ ....+.+|...|..+.+. -..|++++.|
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed 261 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED 261 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence 7665 22233456999999999998 5789999999999999996544 355678899999998877 6789999999
Q ss_pred CcEEEEEeCCCceeeEe-----------------------------ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134 295 HTIKVWFATGRGNLEAA-----------------------------YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVH 345 (394)
Q Consensus 295 g~i~vwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~ 345 (394)
|.|.+||+........- ..|.-.....+++..-+.... ...+-+..=.+|
T Consensus 262 g~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~-~~p~mg~e~~vR 340 (404)
T KOG1409|consen 262 GGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS-SYPTMGFEFSVR 340 (404)
T ss_pred CeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc-ccccccceeEEE
Confidence 99999998653221100 000000000111111111111 122222233344
Q ss_pred EEE--------CCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 346 LYE--------LPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 346 iwd--------~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+-| .+. ..+ .+++ .+.|+.+.+...- +|+|++.|..|+|||+..
T Consensus 341 ~~~~c~~~i~~~~~-t~L-A~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 341 VCDSCYPTIKDEER-TPL-AIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EecccchhhhcCCC-Ccc-ccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 443 332 112 1222 6779999988775 999999999999999864
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.2e-12 Score=117.57 Aligned_cols=186 Identities=20% Similarity=0.180 Sum_probs=133.9
Q ss_pred EEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe
Q 016134 178 SGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 178 ~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs 252 (394)
..++|+.+|..|++++.||+ ||++.+.... ... .|..+|.+|.|+ +.+|++-+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~----------------------~~~~eV~DL~FS~dgk~lasig 205 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI----------------------AHHAEVKDLDFSPDGKFLASIG 205 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH----------------------hhcCccccceeCCCCcEEEEec
Confidence 78999999999999999999 7998776654 333 456677777776 67899999
Q ss_pred CCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc--C---C-EEEE-EeCCCcEEEEEeCCCcee-----eEeecccCCc
Q 016134 253 MDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW--D---Q-FLLS-CSLDHTIKVWFATGRGNL-----EAAYTHKEDN 318 (394)
Q Consensus 253 ~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~---~-~l~s-~s~Dg~i~vwd~~~~~~~-----~~~~~~~~~~ 318 (394)
.| ..+||+.+++.+++.... -......+.|. + . ++++ ...-+.|+.||+.....- .+........
T Consensus 206 ~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 206 AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 99 999999999977776652 22234555565 2 2 2222 233456777776543221 1111111123
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--CcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
..+.+ +++|+ +++.|+.||.|-|++..+.+.+..++.. .-|+.+.|+||. ++++.+.|.+..|..+.-
T Consensus 285 Ssl~V----S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 285 SSLAV----SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEE----cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 33433 89999 9999999999999999998888877763 459999999998 999999999988887654
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2e-13 Score=125.49 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=166.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCC--EEEEEec------CCCC---------C
Q 016134 176 AVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ------DGHT---------R 236 (394)
Q Consensus 176 ~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~------~~h~---------~ 236 (394)
.-..+.++.+|++|+.|+..|.| +|+.++...........|.++.|-.+ +++++.. |... .
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~ 210 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI 210 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence 34668889999999999999995 99999888765556667777777554 3333322 2222 3
Q ss_pred CEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134 237 PVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY 312 (394)
Q Consensus 237 ~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 312 (394)
.|..+.|-+ -+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+ +..+-+|...|+|.+|.....+++..+.
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 444444542 468899999999999999999999888777777777766 6678889999999999999999999999
Q ss_pred cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
.|..++..+++ +++|. +++|.+.|..++|||++....+.++...+....+++|..|+||.+-.| .|.||.
T Consensus 291 cH~g~V~siAv----~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~-~v~iw~ 360 (545)
T KOG1272|consen 291 CHRGPVSSIAV----DRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD-HVQIWK 360 (545)
T ss_pred hcCCCcceEEE----CCCCc-EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCC-eeeeeh
Confidence 99988888777 89998 999999999999999999998888877888999999988877777555 588885
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-11 Score=120.87 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=144.9
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEE
Q 016134 91 SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAK 169 (394)
Q Consensus 91 s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~ 169 (394)
+.+..+.+||.+..+.. ...++...+.... |+|++.+++..... +....|++||+.++. +.+..
T Consensus 181 ~~~~~i~i~d~dg~~~~-------------~lt~~~~~v~~p~-wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 181 SQPYEVRVADYDGFNQF-------------IVNRSSQPLMSPA-WSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred CceEEEEEECCCCCCce-------------EeccCCCccccce-EcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEec
Confidence 34678999998765532 1223344567777 99999999765543 335579999997763 33444
Q ss_pred ecccCCCeEEEEecCCCCEEEEEe-CCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134 170 LEGHEKAVSGIALPLRSDKLFSGS-RDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG 244 (394)
Q Consensus 170 l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~ 244 (394)
+.+|. ..++|+|||+.|+.++ .++. | ||+.+++...+..+ ...+....|+
T Consensus 246 ~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------------------~~~~~~~~wS 300 (429)
T PRK01742 246 FRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG----------------------AGNNTEPSWS 300 (429)
T ss_pred CCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC----------------------CCCcCCEEEC
Confidence 55543 4689999999888765 5665 4 46666655444332 2334455665
Q ss_pred --CCeEEE-EeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 245 --RSRLCS-GSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 245 --~~~l~s-gs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
++.|+. ...++...||++... .....+ .+.. ....|+ ++.|+..+.++ +.+||+.+++........ ..
T Consensus 301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~ 374 (429)
T PRK01742 301 PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD 374 (429)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC
Confidence 455444 445788888876432 222223 3333 345555 78888877765 566999877544322221 11
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECC--CCceeEEEec-CCcEEEEEECCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELP--SFMERGRIFS-KHEVRVIEIGPD 372 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~-~~~v~~l~~sp~ 372 (394)
. ...|+|+|+ +|+.++.++.+.+|++. ++..+..+.. ...+...+|+|-
T Consensus 375 ~----~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 E----SPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred C----CceECCCCC-EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1 234799999 78888888888888753 4666666654 556888899884
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.42 E-value=1.8e-11 Score=107.96 Aligned_cols=236 Identities=16% Similarity=0.144 Sum_probs=163.0
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES 203 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~ 203 (394)
.|++-+ |+.+...+|....+. -|+|+..... ++..+++..|...|++|.|+|..+.|++|+.|.. ||....
T Consensus 12 pitchA-wn~drt~iAv~~~~~----evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 12 PITCHA-WNSDRTQIAVSPNNH----EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ceeeee-ecCCCceEEeccCCc----eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 567777 899888888877766 6888877433 6899999999999999999999999999999988 798844
Q ss_pred CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce----eEEEcCCCCC
Q 016134 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP----VMTLNDHTDA 277 (394)
Q Consensus 204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~ 277 (394)
+.... |..++ -.+....+++.|+ ++.|++|+.-..|.||-++..+- .+.-+.+.+.
T Consensus 87 ~~~Wk--------------ptlvL----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 87 GGTWK--------------PTLVL----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred CCeec--------------cceeE----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 33211 11000 0467788888887 68899999999999998865332 1122446788
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEeCCCc--------------eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134 278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRG--------------NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d 341 (394)
|++++|+ +-+|++|+.|+.++||...-.. +.-.+.............+.|+|+|. .|+-.+.|
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hd 227 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHD 227 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCC
Confidence 9999999 5588899999999999642110 00001111111223333456899999 78888899
Q ss_pred CeEEEEECCCCce-eEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEE
Q 016134 342 NTVHLYELPSFME-RGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVW 387 (394)
Q Consensus 342 g~I~iwd~~~~~~-~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vW 387 (394)
..+.+-|.....+ +..+.. .-+..++.|-.+..++.++.|..=.++
T Consensus 228 s~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 228 STVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred CceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 9999999887653 222222 456677777666656666666443333
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.3e-10 Score=102.61 Aligned_cols=210 Identities=12% Similarity=0.179 Sum_probs=141.8
Q ss_pred eEEEEecCCCCEEEEEeCCCc-eeecCCCcEE---EecCCCCcEEEEEEcCC-EEEEEecC-------------------
Q 016134 177 VSGIALPLRSDKLFSGSRDGT-AWNIESSAEF---SLDGPVGEVYSMVVANE-MLFAGAQD------------------- 232 (394)
Q Consensus 177 V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~---~~~~~~~~v~~l~~~~~-~l~~~~~~------------------- 232 (394)
...++|+.|...++.|..+|. |++.+--+.. ......-.+..|-|.-+ ..++|+..
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 344888888888888888887 6666532221 00000011112222222 22222211
Q ss_pred ----CCCCCEEEEEecCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCC--CCcEEEEEc-CC-EEEEE-eCCCcEEEEEe
Q 016134 233 ----GHTRPVTCLAVGRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHT--DAPMSLLCW-DQ-FLLSC-SLDHTIKVWFA 302 (394)
Q Consensus 233 ----~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~--~~v~~l~~~-~~-~l~s~-s~Dg~i~vwd~ 302 (394)
....+|.++.+..+.|++.- ++.|.||... ..+.++.++... ....+++-. +. +||.- -.-|.|+|-|+
T Consensus 88 i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 88 IIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 23467777777777777765 5789999987 456666665322 233444333 33 44443 34689999999
Q ss_pred CCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEec---CCcEEEEEECCCC-EE
Q 016134 303 TGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LF 375 (394)
Q Consensus 303 ~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l 375 (394)
...+. ...+..|...+.++++ +-+|. ++||++..|+ |||||..++.++.++.. ...|.+|+|+|+. +|
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~L----n~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVAL----NLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEE----cCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 86554 4677788877777776 78898 9999999997 79999999999999876 5569999999999 99
Q ss_pred EEEeCCCeEEEEeCCCC
Q 016134 376 FTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 376 ~tgs~Dg~I~vWd~~~~ 392 (394)
+.+|.-|+|+||.+...
T Consensus 242 avsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCeEEEEEeecC
Confidence 99999999999998763
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.7e-10 Score=101.81 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=141.1
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC--c-------eeecCCCc
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--T-------AWNIESSA 205 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--~-------vWd~~~~~ 205 (394)
|+.+..-++.+...| .||++.+. ++.....+-+.+.+.-+..--..++|+-.+..+ . |||=....
T Consensus 13 ~NQD~ScFava~~~G-----friyn~~P-~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 13 FNQDHSCFAVATDTG-----FRIYNCDP-FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred EccCCceEEEEecCc-----eEEEecCc-hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 554443334344443 78998864 232222232333222222222345655444333 2 79976677
Q ss_pred EEEecCCCCcEEEEEEcCCEEEEEecC--------------------CCCCCEEEEEec--CCeEEE-EeCCCeEEEEeC
Q 016134 206 EFSLDGPVGEVYSMVVANEMLFAGAQD--------------------GHTRPVTCLAVG--RSRLCS-GSMDNTIRVWEL 262 (394)
Q Consensus 206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~s-gs~Dg~V~iwd~ 262 (394)
++.......+|.++.+..+.+++.... .....+.+++-. ..+||. |-.-|.|.|-|+
T Consensus 87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 776667778999999999876666544 112334444433 223433 445789999999
Q ss_pred CCCce--eEEEcCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134 263 DTLEP--VMTLNDHTDAPMSLLCW--DQFLLSCSLDHT-IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC 337 (394)
Q Consensus 263 ~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s 337 (394)
...+. -..+.+|.+.|.+++.. |.++||+|..|+ |||||..+++.++.+........+.++ .|+|+.. +|++
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i--aFSp~~s-~Lav 243 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI--AFSPNSS-WLAV 243 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE--EeCCCcc-EEEE
Confidence 76554 46788999999999998 899999999997 899999999999998877666666655 5899999 9999
Q ss_pred EeCCCeEEEEECCC
Q 016134 338 ACNDNTVHLYELPS 351 (394)
Q Consensus 338 gs~dg~I~iwd~~~ 351 (394)
+|+.|+|+||.++.
T Consensus 244 sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCeEEEEEeec
Confidence 99999999999875
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=1.9e-11 Score=107.90 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=150.0
Q ss_pred EecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-- 244 (394)
Q Consensus 169 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-- 244 (394)
.+.--..+|+|.+|++|...+|.+-.... |+.....+.... ......|...|+.|+|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~------------------~htls~Hd~~vtgvdWap~ 66 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP------------------AHTLSEHDKIVTGVDWAPK 66 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee------------------ceehhhhCcceeEEeecCC
Confidence 33334679999999999999999887766 566655552211 11333788899999998
Q ss_pred CCeEEEEeCCCeEEEEeCCC---CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134 245 RSRLCSGSMDNTIRVWELDT---LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 319 (394)
.+.|++++.|..-+||.... .++...+..+....+++.|+ ++.|++++..+.|.||-++....--.......++.
T Consensus 67 snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 67 SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 57899999999999999833 34555666789999999999 78999999999999998876443322222223333
Q ss_pred eEEEEeeECCCCCcEEEEEeCCCeEEEEECC-----C-------------CceeEEE-ecCCcEEEEEECCCC-EEEEEe
Q 016134 320 VLALGGLNDPDGKPVLICACNDNTVHLYELP-----S-------------FMERGRI-FSKHEVRVIEIGPDK-LFFTGD 379 (394)
Q Consensus 320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs 379 (394)
....++.|+|++- +|++|+.|+..+||..- . +++..++ ...+.|..+.|+|+| .|+-.+
T Consensus 147 Stv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 147 STVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred cceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 3334456899988 99999999999999631 1 1222233 235679999999999 999999
Q ss_pred CCCeEEEEeCCC
Q 016134 380 GAGMLGVWKLLA 391 (394)
Q Consensus 380 ~Dg~I~vWd~~~ 391 (394)
.|..+.+=|...
T Consensus 226 Hds~v~~~da~~ 237 (361)
T KOG1523|consen 226 HDSTVSFVDAAG 237 (361)
T ss_pred CCCceEEeecCC
Confidence 999999877554
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.7e-12 Score=120.35 Aligned_cols=153 Identities=22% Similarity=0.328 Sum_probs=121.0
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCC
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
||++-|+|+.|+ |.+|++||.|-.+.|||.-..++++.+ .+|...|.++.|. +..+++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999997 899999999999999999888888877 4799999999997 568999999999999999742
Q ss_pred ----------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE-------Eec----CCcE
Q 016134 306 ----------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR-------IFS----KHEV 364 (394)
Q Consensus 306 ----------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~----~~~v 364 (394)
+....+..|...+..++. .|++.+.+.++++||+|+-||++....... +.. --..
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~----~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIAT----APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheec----CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 222233334444444444 678867999999999999999987421111 110 2247
Q ss_pred EEEEECCCC--EEEEEeCCCeEEEEeC
Q 016134 365 RVIEIGPDK--LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 365 ~~l~~sp~~--~l~tgs~Dg~I~vWd~ 389 (394)
.++.++|.. +|+.|+.|--.++||.
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhh
Confidence 889999988 9999999999999993
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.36 E-value=9.1e-10 Score=103.80 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=130.0
Q ss_pred CCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCC-CcEEEecCCCCcEEEEEEcCC
Q 016134 151 ECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIES-SAEFSLDGPVGEVYSMVVANE 224 (394)
Q Consensus 151 ~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~-~~~~~~~~~~~~v~~l~~~~~ 224 (394)
.++.|++|++.+. .+.+..+. +.+....++++|++++|+.++. ++. +|+++. +........
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------------ 76 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------------ 76 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------------
Confidence 3458999999632 24556554 3466788999999999987765 443 488763 322111000
Q ss_pred EEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCCC-C---ceeEEEcCCCCCcEEEEEc--CCEEEEE-eCC
Q 016134 225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELDT-L---EPVMTLNDHTDAPMSLLCW--DQFLLSC-SLD 294 (394)
Q Consensus 225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~-~---~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~D 294 (394)
........+.++ +++|++++ .++.|.+||+++ + +.+..+. +...+..+.++ +++++++ ..+
T Consensus 77 --------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 77 --------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred --------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCC
Confidence 111223456666 56666665 488999999964 2 2333333 23345667777 6666554 457
Q ss_pred CcEEEEEeCCCceeeE-----eecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCC--Cc--eeEEEec----
Q 016134 295 HTIKVWFATGRGNLEA-----AYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPS--FM--ERGRIFS---- 360 (394)
Q Consensus 295 g~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~--~~--~~~~~~~---- 360 (394)
+.|.+||+.+...+.. ..... ..... .+.|+|+++ +|++.. .+++|.+|++.. ++ .+..+..
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~--~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPR--HMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCC-CCCCc--eEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 9999999976433221 11111 11111 234699999 555454 489999999973 22 2323221
Q ss_pred ---CCcEEEEEECCCC-EEEEEe-CCCeEEEEeCCCC
Q 016134 361 ---KHEVRVIEIGPDK-LFFTGD-GAGMLGVWKLLAK 392 (394)
Q Consensus 361 ---~~~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~~~ 392 (394)
......+.++|++ +|+++. .++.|.+|+++.+
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 1123468899999 677764 5789999998654
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.2e-11 Score=112.81 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=125.3
Q ss_pred eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEE
Q 016134 130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFS 208 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~ 208 (394)
..++ ++.++..++++..+| ++|||+..+. ..+.....|.+.|.+|.|+|||++|++-+.|.. ||+.+++..+.
T Consensus 148 k~va-f~~~gs~latgg~dg----~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVA-FNGDGSKLATGGTDG----TLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALA 221 (398)
T ss_pred eEEE-EcCCCCEeeeccccc----eEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhh
Confidence 4555 888888888777666 9999997665 667777889999999999999999999999955 89999985442
Q ss_pred ecC---CCCcEEEEEEcCC-----EEEEEecC-------------------------CCCCCEEEEEec--CCeEEEEeC
Q 016134 209 LDG---PVGEVYSMVVANE-----MLFAGAQD-------------------------GHTRPVTCLAVG--RSRLCSGSM 253 (394)
Q Consensus 209 ~~~---~~~~v~~l~~~~~-----~l~~~~~~-------------------------~h~~~V~~l~~~--~~~l~sgs~ 253 (394)
... .......+.|+.+ .++.+... .-...|.+++.+ |++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 211 1111222333222 11111111 123478888886 899999999
Q ss_pred CCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134 254 DNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG 304 (394)
Q Consensus 254 Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~ 304 (394)
||.|-|++..+.++++-+ +.|...|+.+.|. .+++++.+.|.+..|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999988887766 4699999999999 57888888899988887754
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=115.73 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=132.5
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC---EE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE---ML 226 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~---~l 226 (394)
||.+.|.+-. .+.-+...+|.++|.+-.|+|||.-|+|++.||. +|.-...-...+.....+|++++|.|+ .+
T Consensus 84 DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 84 DGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred CceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 4466666542 2556677899999999999999999999999999 598654443456667788999999987 44
Q ss_pred EEEecC----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCE
Q 016134 227 FAGAQD----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQF 287 (394)
Q Consensus 227 ~~~~~~----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~ 287 (394)
++.+.. .|.+-|.++.|+ .+++++|++|-..+|||.. |..+.+-..|..+|++++|. +..
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccc
Confidence 444332 799999999998 6899999999999999975 67777778899999999999 445
Q ss_pred EEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEE
Q 016134 288 LLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY 347 (394)
Q Consensus 288 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iw 347 (394)
++.++. +++|+=. .....++ ...|++||. .+++|+..|.+.+=
T Consensus 241 ~~v~S~-nt~R~~~-------------p~~GSif--nlsWS~DGT-Q~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 241 YLLWSY-NTARFSS-------------PRVGSIF--NLSWSADGT-QATCGTSTGQLIVA 283 (737)
T ss_pred eeeeee-eeeeecC-------------CCccceE--EEEEcCCCc-eeeccccCceEEEe
Confidence 555543 4555111 1112233 445799999 89989888877654
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.3e-10 Score=108.16 Aligned_cols=255 Identities=12% Similarity=0.128 Sum_probs=169.5
Q ss_pred CCccceeeecccccccccc-CCCeecCCCCCeEEEEEcCCCceEEEEeccc--CCCeEEEEecCCCCEEEEEeCCCce-e
Q 016134 124 GDKSTSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCGEGLTMLAKLEGH--EKAVSGIALPLRSDKLFSGSRDGTA-W 199 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~l~sgs~Dg~v-W 199 (394)
+++..-+.+. .+|++.|+ |++.+-- .|++||+.+- ...+.-| ...|.-.-++.|-..++---.|.+| +
T Consensus 49 e~p~ast~ik-~s~DGqY~lAtG~YKP----~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 49 EMPTASTRIK-VSPDGQYLLATGTYKP----QIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred CCccccceeE-ecCCCcEEEEecccCC----ceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence 4445556666 89999997 4455544 8999999653 3333344 3445555556666666666667664 3
Q ss_pred ecCCCcEEEecCCCCcEEEEEE---cCCEEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeE
Q 016134 200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTI 257 (394)
Q Consensus 200 d~~~~~~~~~~~~~~~v~~l~~---~~~~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V 257 (394)
....|....+.- ...-..|.+ +-+++++|+.. .....++++..+ ..+|++|+.||.|
T Consensus 121 Hak~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 121 HAKYGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hhhcCeeeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 333333221100 000111222 22233333322 334778888887 6789999999999
Q ss_pred EEEeCCCCceeEEEcC------CCC-----CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEE
Q 016134 258 RVWELDTLEPVMTLND------HTD-----APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG 324 (394)
Q Consensus 258 ~iwd~~~~~~~~~~~~------h~~-----~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 324 (394)
..||.++...+.++.. |.+ .|+++.|. |-.+++|..+|.+.|||++..+++.. ..|.....+..+.
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLD 278 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeec
Confidence 9999998776666543 333 49999998 56899999999999999998776543 3455555566555
Q ss_pred eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+.-. +++..|++. +...++|||-.+++....+.....++.+++-|++ +++++-++..+..|=+.
T Consensus 279 ~~~~-~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 279 WQDT-DQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cccc-CCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4333 334356544 5678999999999999988888889999999998 99999999888776543
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.33 E-value=2.9e-10 Score=115.84 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=152.1
Q ss_pred eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCc----E----EEecCCCCcEEEEEEcCC--EEEEEec
Q 016134 165 TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSA----E----FSLDGPVGEVYSMVVANE--MLFAGAQ 231 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~----~----~~~~~~~~~v~~l~~~~~--~l~~~~~ 231 (394)
.++..+..|+..|..++.+++. .+|+|||.||+ +|+...-. . .+.......+..+...+. .+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 7889999999999999998755 99999999999 69976421 1 122334556666665544 7777777
Q ss_pred CC--------C------------------CCCEEEE-Eec---CC-eEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCc
Q 016134 232 DG--------H------------------TRPVTCL-AVG---RS-RLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAP 278 (394)
Q Consensus 232 ~~--------h------------------~~~V~~l-~~~---~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v 278 (394)
|| | .+.+..+ +|. .. .++.+..-+.|..||++......+++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 71 2 1222222 222 34 67788888999999998866555443 245789
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc-CCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCce
Q 016134 279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK-EDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFME 354 (394)
Q Consensus 279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~ 354 (394)
++++.+ +..++.|...|.+.+||+|=...+..+.... .+..-+.++. +.+.....+++++ ..+.|.+|++.++..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcc
Confidence 999998 7899999999999999999776666554322 2223333322 2333342344444 578999999998865
Q ss_pred eEEEecC---------------------CcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 355 RGRIFSK---------------------HEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 355 ~~~~~~~---------------------~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
...+... ..+.+.-..+++.+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 5544321 1123333333449999999999999998654
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.1e-09 Score=98.24 Aligned_cols=274 Identities=13% Similarity=0.142 Sum_probs=162.2
Q ss_pred CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCC
Q 016134 73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDE 151 (394)
Q Consensus 73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~ 151 (394)
-+..+|.. .--.++.+..|.+||++|-....... -.....+.|++++ |.| +..-++.+|..|
T Consensus 101 lr~~aWhq--H~~~fava~nddvVriy~ksst~pt~------------Lks~sQrnvtcla-wRPlsaselavgCr~g-- 163 (445)
T KOG2139|consen 101 LRGVAWHQ--HIIAFAVATNDDVVRIYDKSSTCPTK------------LKSVSQRNVTCLA-WRPLSASELAVGCRAG-- 163 (445)
T ss_pred eeeEeech--hhhhhhhhccCcEEEEeccCCCCCce------------ecchhhcceeEEE-eccCCcceeeeeecce--
Confidence 45666765 22345677889999999987632221 2334557899999 888 566678888887
Q ss_pred CCeEEEEEcCCCceE-------------EEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEec-CCCC
Q 016134 152 CRFLHSWFCGEGLTM-------------LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLD-GPVG 214 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~-------------~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~-~~~~ 214 (394)
|-||........ +....+| .+|++|+|++||..|++++.+.. |||..++..+.+. ...+
T Consensus 164 ---IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 164 ---ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred ---eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 889987422111 1222345 78999999999999999998877 7999999988654 2333
Q ss_pred cEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCcEEEEEc--CCEEEEE
Q 016134 215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAPMSLLCW--DQFLLSC 291 (394)
Q Consensus 215 ~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 291 (394)
.+.-+.|+|| +++|+.+.-|+..++|+.. +..+.+-.. -.+.|....|+ |.+|+..
T Consensus 240 g~slLkwSPd--------------------gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 240 GFSLLKWSPD--------------------GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred ceeeEEEcCC--------------------CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence 3444444443 5678888889999999543 333333222 34477777777 5544433
Q ss_pred eCCCcEEEEEeCCCceeeEee--------------------cccCCcceEEEEeeECCCCCcEEEEEeCCC--------e
Q 016134 292 SLDHTIKVWFATGRGNLEAAY--------------------THKEDNGVLALGGLNDPDGKPVLICACNDN--------T 343 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--------~ 343 (394)
.. +.-++|.+.-.+....+. .......--+-+.+|+|.|. +|++.-..+ .
T Consensus 299 ~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~ 376 (445)
T KOG2139|consen 299 CS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLH 376 (445)
T ss_pred Ec-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhh
Confidence 32 233444432111100000 00000001112335799999 677654333 3
Q ss_pred EEEEECCCCceeEEEe----cCCcEEEEEECC---CC-EEEEEeCCCeEEEEeCC
Q 016134 344 VHLYELPSFMERGRIF----SKHEVRVIEIGP---DK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 344 I~iwd~~~~~~~~~~~----~~~~v~~l~~sp---~~-~l~tgs~Dg~I~vWd~~ 390 (394)
|.+||.+..-.+.... .......+.|+| ++ +|..+=..|.+.-|++.
T Consensus 377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 6778877543332221 123355566666 23 66666677777776653
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.6e-09 Score=105.87 Aligned_cols=207 Identities=14% Similarity=0.037 Sum_probs=127.1
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
...|.+||.... ..+.+..|...+.+.+|+||++.|+..+.++. +||+.+++...+....+..
T Consensus 183 ~~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~---------- 250 (433)
T PRK04922 183 RYALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN---------- 250 (433)
T ss_pred eEEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc----------
Confidence 347899998543 23456667888999999999999998875542 5888887765443322222
Q ss_pred EEEecCCCCCCEEEEEec--CCeE-EEEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCc--
Q 016134 227 FAGAQDGHTRPVTCLAVG--RSRL-CSGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHT-- 296 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~-- 296 (394)
.++.|+ ++.| ++.+.++ .|.+||+.+++. ..+..+........|+ ++.|+..+. ++.
T Consensus 251 ------------~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 251 ------------GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred ------------cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCce
Confidence 233454 4443 3444444 599999988764 4455555555677787 677776663 444
Q ss_pred EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134 297 IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 297 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
|.++|+..++... +........ ...|+|+|+ .|+..+ .++ .|.+||+.+++.. .+..........|+|||
T Consensus 318 iy~~dl~~g~~~~-lt~~g~~~~----~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG 390 (433)
T PRK04922 318 IYRVAASGGSAER-LTFQGNYNA----RASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNG 390 (433)
T ss_pred EEEEECCCCCeEE-eecCCCCcc----CEEECCCCC-EEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCC
Confidence 6666665554322 222111111 234699999 555443 332 6999999887654 33333345667999999
Q ss_pred -EEEEEeCC---CeEEEEeCC
Q 016134 374 -LFFTGDGA---GMLGVWKLL 390 (394)
Q Consensus 374 -~l~tgs~D---g~I~vWd~~ 390 (394)
+|+..+.+ ..|.++++.
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CEEEEEEecCCceEEEEEECC
Confidence 55554442 346666664
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.28 E-value=1e-09 Score=111.94 Aligned_cols=260 Identities=12% Similarity=0.176 Sum_probs=163.5
Q ss_pred CccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce
Q 016134 125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA 198 (394)
Q Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v 198 (394)
|...+.++++-++...++++++.+| +|++|+...- .+...++.-....+.++.+.+.++.+|.++.||.|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DG----tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDG----TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCc----eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 3344555553555557776665555 9999998421 23344444457889999999999999999999993
Q ss_pred --eecCC--Cc-----EEEec--CCCCcEEEE-EEcCC----EEEEEecC--------------------CCCCCEEEEE
Q 016134 199 --WNIES--SA-----EFSLD--GPVGEVYSM-VVANE----MLFAGAQD--------------------GHTRPVTCLA 242 (394)
Q Consensus 199 --Wd~~~--~~-----~~~~~--~~~~~v~~l-~~~~~----~l~~~~~~--------------------~h~~~V~~l~ 242 (394)
.+++. .. +.+.. ...+.+.+| +|... .++.++.- ...+.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 44433 11 11111 122223332 23221 23333222 3457899999
Q ss_pred ec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc---C--CEEEEEe--CCCcEEEEEeCCCceeeEee
Q 016134 243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW---D--QFLLSCS--LDHTIKVWFATGRGNLEAAY 312 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~--~~l~s~s--~Dg~i~vwd~~~~~~~~~~~ 312 (394)
.+ ++.+++|...|.+.+||++-+.++..++ .+..+|..+..+ + ...++++ ..+.|-+|++.++.....+.
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 98 6789999999999999999888887775 345677777766 3 4455444 47889999999886665554
Q ss_pred cccC-C-------cc------eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-----------------------
Q 016134 313 THKE-D-------NG------VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER----------------------- 355 (394)
Q Consensus 313 ~~~~-~-------~~------~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~----------------------- 355 (394)
.... + .. ..+...+--++++.++.+|+.|..|+.||....+..
T Consensus 1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i 1362 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTI 1362 (1431)
T ss_pred cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcccccc
Confidence 4311 0 00 000000112344448999999999999997542111
Q ss_pred ------E-------------------E---------EecCCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134 356 ------G-------------------R---------IFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWK 388 (394)
Q Consensus 356 ------~-------------------~---------~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd 388 (394)
. . ..|.+.|+.+++.... +|++++.||.|+||.
T Consensus 1363 ~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1363 PGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0 0013458888777665 999999999999994
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.3e-09 Score=97.86 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=145.0
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCC-CCEEEEEeCCCc-eeecCCC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLR-SDKLFSGSRDGT-AWNIESS 204 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~-~~~l~sgs~Dg~-vWd~~~~ 204 (394)
.++.++ |++...-+|.+..+- +|||+|.... ....++ ..+..|+|++|-|. ++-|+.|...|. ||.....
T Consensus 100 dlr~~a-WhqH~~~fava~ndd----vVriy~ksst--~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVA-WHQHIIAFAVATNDD----VVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRT 172 (445)
T ss_pred ceeeEe-echhhhhhhhhccCc----EEEEeccCCC--CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcc
Confidence 456666 777555555555444 9999997653 233333 34678999999984 467888998888 7987543
Q ss_pred cEEEe-----cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeEEEcCCCC
Q 016134 205 AEFSL-----DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVMTLNDHTD 276 (394)
Q Consensus 205 ~~~~~-----~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~h~~ 276 (394)
..... ..+..+|. ...+| ..|+++.|+ +..+++++. |..|.|||..++.++.-...-.+
T Consensus 173 ln~~r~~~~~s~~~~qvl------------~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVL------------QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred cccccccccccccchhhe------------eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 22211 11111111 11245 789999997 667888775 67999999999887655434456
Q ss_pred CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-
Q 016134 277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM- 353 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~- 353 (394)
.+.-+.|+ +.+|+.+.-|+..++|+............... .....+|+|+|..+|++.+..- ++|.+....
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg----rvqtacWspcGsfLLf~~sgsp--~lysl~f~~~ 313 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG----RVQTACWSPCGSFLLFACSGSP--RLYSLTFDGE 313 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC----ceeeeeecCCCCEEEEEEcCCc--eEEEEeecCC
Confidence 78888888 78999999999999996554332222222222 2234458999997777766444 444432110
Q ss_pred -----------eeE---EEe------c----CCcEEEEEECCCC-EEEEEeC
Q 016134 354 -----------ERG---RIF------S----KHEVRVIEIGPDK-LFFTGDG 380 (394)
Q Consensus 354 -----------~~~---~~~------~----~~~v~~l~~sp~~-~l~tgs~ 380 (394)
... .+. . .+++.+++|.|.| +|++.-.
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 000 000 0 3568999999999 7777554
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=109.44 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=112.4
Q ss_pred CCCEEEEEec---CCeEEEEeCCCeEEEEeCCC--------------C--------------ceeEEEcCCCCCcEEEEE
Q 016134 235 TRPVTCLAVG---RSRLCSGSMDNTIRVWELDT--------------L--------------EPVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 235 ~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~--------------~--------------~~~~~~~~h~~~v~~l~~ 283 (394)
...|+|+.|- ..+++.+..+|.+.+||..- + .++..+.--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3678888884 56777888889999997631 1 111112112346777777
Q ss_pred c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134 284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS- 360 (394)
Q Consensus 284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 360 (394)
+ +++||+.+.||.+||||..+.+.+..+.... ...+ +++|+|||+ +|++|++|.-|.||.+...+.+..=..
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--GGLL--CvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--GGLL--CVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--cceE--EEEEcCCcc-EEEecCCcceEEEEEeccceEEEecccc
Confidence 7 8999999999999999998766555444332 2333 446899999 999999999999999998877665433
Q ss_pred CCcEEEEEECC------------------------------------------------CC-EEEEEeCCCeEEEEeCCC
Q 016134 361 KHEVRVIEIGP------------------------------------------------DK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 361 ~~~v~~l~~sp------------------------------------------------~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
+.+|..|+|.| .. .|.+.+.|-++.+||+.+
T Consensus 374 kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 374 KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 77899999882 11 578888999999999976
Q ss_pred C
Q 016134 392 K 392 (394)
Q Consensus 392 ~ 392 (394)
+
T Consensus 454 D 454 (636)
T KOG2394|consen 454 D 454 (636)
T ss_pred h
Confidence 4
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=5.4e-09 Score=101.95 Aligned_cols=210 Identities=13% Similarity=0.035 Sum_probs=125.4
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc----eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT----AWNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
...|.+||.... . .+.+..+...+...+|+|||+.|+..+.+ +. +|++.+++...+....+.+..+.|+|+
T Consensus 178 ~~~l~~~d~dg~-~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD-- 253 (429)
T PRK03629 178 PYELRVSDYDGY-N-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD-- 253 (429)
T ss_pred ceeEEEEcCCCC-C-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC--
Confidence 347888888654 2 23344567889999999999999876543 22 588887765543322222222333332
Q ss_pred EEEecCCCCCCEEEEEecCCeEEE-EeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC-CcEEEE
Q 016134 227 FAGAQDGHTRPVTCLAVGRSRLCS-GSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD-HTIKVW 300 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~~~l~s-gs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D-g~i~vw 300 (394)
++.|+. .+.++ .|.+||+++++..+ +..+...+....|+ ++.|+..+.+ +...||
T Consensus 254 ------------------G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 254 ------------------GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred ------------------CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 444443 23344 58899998877654 44444566778887 6777766653 444555
Q ss_pred --EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EE
Q 016134 301 --FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF 375 (394)
Q Consensus 301 --d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l 375 (394)
|+..++. ..+........ ...|+|+|+.+++++..+ ..|.+||+.+++.. .+..........|+||| +|
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~----~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 315 KVNINGGAP-QRITWEGSQNQ----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMV 388 (429)
T ss_pred EEECCCCCe-EEeecCCCCcc----CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEE
Confidence 5554433 23322221111 234699999444444333 35888999887543 33333334567899999 77
Q ss_pred EEEeCCCe---EEEEeCC
Q 016134 376 FTGDGAGM---LGVWKLL 390 (394)
Q Consensus 376 ~tgs~Dg~---I~vWd~~ 390 (394)
+..+.++. +.+++++
T Consensus 389 ~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 389 IYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEcCCCceEEEEEECC
Confidence 77777764 6677764
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=6.6e-09 Score=101.72 Aligned_cols=210 Identities=12% Similarity=-0.005 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC---c--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG---T--AWNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
...|.++|.... ..+.+..|...+...+|+|||+.|+..+.++ . +||+.+++...+....+.+....|+|+
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD-- 256 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD-- 256 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC--
Confidence 347888887543 3455667888999999999999998877542 2 689988876554433333333333332
Q ss_pred EEEecCCCCCCEEEEEecCCeE-EEEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEE
Q 016134 227 FAGAQDGHTRPVTCLAVGRSRL-CSGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIK 298 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~~~l-~sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~ 298 (394)
++.| ++.+.++. |.+||+++++. ..+..+........|+ ++.|+..+. ++ .|.
T Consensus 257 ------------------G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 257 ------------------GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLY 317 (435)
T ss_pred ------------------CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence 4443 34455554 77779887765 4455565556667777 677776663 33 678
Q ss_pred EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---CeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134 299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L 374 (394)
Q Consensus 299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~ 374 (394)
++|+..++.. .+........ ...|+|+|+ .|+....+ ..|.+||+..+.. ..+.....+..+.|+||| .
T Consensus 318 ~~d~~g~~~~-~lt~~~~~~~----~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 318 VMNADGSNPR-RISFGGGRYS----TPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRV 390 (435)
T ss_pred EEECCCCCeE-EeecCCCccc----CeEECCCCC-EEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCE
Confidence 8887655433 3322221111 224699999 55544332 3688888865443 333334457788999999 5
Q ss_pred EEEEeC-C-----CeEEEEeCCC
Q 016134 375 FFTGDG-A-----GMLGVWKLLA 391 (394)
Q Consensus 375 l~tgs~-D-----g~I~vWd~~~ 391 (394)
|+..+. . ..|.++++..
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCC
Confidence 544333 2 2567777654
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=5.8e-09 Score=101.77 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=120.1
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
..|.++|... ...+.+..+...+.+.+|+|||+.|+..+.+.. +||+.+++...+....+.+
T Consensus 176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~----------- 242 (427)
T PRK02889 176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN----------- 242 (427)
T ss_pred cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-----------
Confidence 3577777643 233455678889999999999999988775432 5899888765543222222
Q ss_pred EEecCCCCCCEEEEEec--CCeEE-EEeCCCeEEEEe--CCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEE
Q 016134 228 AGAQDGHTRPVTCLAVG--RSRLC-SGSMDNTIRVWE--LDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKV 299 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg~V~iwd--~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~v 299 (394)
....|+ ++.|+ +.+.++...||. +.+++ ...+..+........|+ ++.|+..+. ++...+
T Consensus 243 -----------~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 243 -----------SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred -----------cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 334554 44444 556677766664 44443 45555555556667787 677776554 566777
Q ss_pred EEeC--CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEECCCCceeEEEecCCcEEEEEECCCC-
Q 016134 300 WFAT--GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYELPSFMERGRIFSKHEVRVIEIGPDK- 373 (394)
Q Consensus 300 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~- 373 (394)
|.+. .+. ...+........ ...|+|+|+ +|+..+.++ .|.+||+.+++... +..........|+||+
T Consensus 311 y~~~~~~g~-~~~lt~~g~~~~----~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~ 383 (427)
T PRK02889 311 YRMPASGGA-AQRVTFTGSYNT----SPRISPDGK-LLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGR 383 (427)
T ss_pred EEEECCCCc-eEEEecCCCCcC----ceEECCCCC-EEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCC
Confidence 7654 332 222221111111 234799999 565555443 69999998876543 3333345678999999
Q ss_pred EEEEEe-CCCe
Q 016134 374 LFFTGD-GAGM 383 (394)
Q Consensus 374 ~l~tgs-~Dg~ 383 (394)
.|+..+ ..|.
T Consensus 384 ~l~~~~~~~g~ 394 (427)
T PRK02889 384 YILYATQQGGR 394 (427)
T ss_pred EEEEEEecCCC
Confidence 555544 4443
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.5e-09 Score=98.42 Aligned_cols=197 Identities=10% Similarity=0.153 Sum_probs=137.9
Q ss_pred cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe---cC
Q 016134 171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GR 245 (394)
Q Consensus 171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~---~~ 245 (394)
..-+++|..++.. ...|++|-.+|. +|..+.+... ..+..-++.. ..+..+.- .+
T Consensus 102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h-----ss~l~~la~g-------------~g~~~~r~~~~~p 161 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH-----SSKLIKLATG-------------PGLYDVRQTDTDP 161 (412)
T ss_pred ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccc-----cccceeeecC-------------CceeeeccCCCCC
Confidence 4456677776653 346777777777 5887744321 1111111111 11222222 25
Q ss_pred CeEEEEeCC--CeEEEEeCCCCceeEEEcCCC---------CCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCc-eee
Q 016134 246 SRLCSGSMD--NTIRVWELDTLEPVMTLNDHT---------DAPMSLLCW----DQFLLSCSLDHTIKVWFATGRG-NLE 309 (394)
Q Consensus 246 ~~l~sgs~D--g~V~iwd~~~~~~~~~~~~h~---------~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~-~~~ 309 (394)
..+++|+.. ..++|||++..+.+.+-+.-. -.++++.|- ...|+++..-+.|++||.+.++ ++.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 678889999 899999999876554433321 245677776 3589999999999999998664 444
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FS-KHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
.+.........+.+ .|.++ ++.+|..-+.+..||++.++..... .. .+.|++|..+|.. +|++++-|..|||
T Consensus 242 ~fd~~E~~is~~~l----~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 242 QFDFLENPISSTGL----TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred EeccccCcceeeee----cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 44444444455554 78888 8999999999999999999888774 33 7789999999998 9999999999999
Q ss_pred EeCCCC
Q 016134 387 WKLLAK 392 (394)
Q Consensus 387 Wd~~~~ 392 (394)
+|+++.
T Consensus 317 hD~ktr 322 (412)
T KOG3881|consen 317 HDIKTR 322 (412)
T ss_pred eecccc
Confidence 999873
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=6.7e-09 Score=101.31 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=125.6
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEE-eCCCc----eeec
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSG-SRDGT----AWNI 201 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~----vWd~ 201 (394)
..+.... |+|++..++-.... +....|.+|++.++. . ..+....+.+..++|+|||+.|+.. +.++. +||+
T Consensus 199 ~~~~~p~-wSPDG~~la~~s~~-~g~~~i~i~dl~~G~-~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 199 QPLMSPA-WSPDGSKLAYVTFE-SGRSALVIQTLANGA-V-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CceeeeE-EcCCCCEEEEEEec-CCCcEEEEEECCCCC-e-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 3556666 99999998855432 234579999997663 2 2222233345568999999988855 44554 5788
Q ss_pred CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCC
Q 016134 202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DN--TIRVWELDTLEPVMTLNDHTD 276 (394)
Q Consensus 202 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~h~~ 276 (394)
++++...+..... .+....|+ ++.|+..+. ++ .|.++|+.+++. ..+..+..
T Consensus 275 ~tg~~~~lt~~~~----------------------~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~ 331 (429)
T PRK03629 275 ASGQIRQVTDGRS----------------------NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS 331 (429)
T ss_pred CCCCEEEccCCCC----------------------CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence 8877655433322 23344554 455555554 34 344557766554 33333334
Q ss_pred CcEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe---EEEEE
Q 016134 277 APMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT---VHLYE 348 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~---I~iwd 348 (394)
......|+ +++|+..+.+ ..|.+||+.+++.. .+... ... ....|+|||+ +|+..+.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~----~~p~~SpDG~-~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLD----ETPSIAPNGT-MVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCC----CCceECCCCC-EEEEEEcCCCceEEEEEE
Confidence 44556666 7777776543 35888998776533 22211 111 1334799999 6666666654 67777
Q ss_pred CCCCceeEEEec-CCcEEEEEECCC
Q 016134 349 LPSFMERGRIFS-KHEVRVIEIGPD 372 (394)
Q Consensus 349 ~~~~~~~~~~~~-~~~v~~l~~sp~ 372 (394)
+. +.....+.. ...+...+|+|-
T Consensus 405 ~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 405 TD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CC-CCCeEECccCCCCcCCcccCCC
Confidence 74 444444443 566888888873
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.4e-09 Score=98.48 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=138.9
Q ss_pred CeEEEEEcCCCc---eEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc----eeecCCCcEEE-ecCCCCcEEEEEEcC
Q 016134 153 RFLHSWFCGEGL---TMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT----AWNIESSAEFS-LDGPVGEVYSMVVAN 223 (394)
Q Consensus 153 ~~i~iWd~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~----vWd~~~~~~~~-~~~~~~~v~~l~~~~ 223 (394)
|.+.+|..+.+. .++..+..+ ..+..|.-.+.... +++|+.... |||++..+.+- -......-..|
T Consensus 125 G~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L---- 199 (412)
T KOG3881|consen 125 GNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL---- 199 (412)
T ss_pred CcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc----
Confidence 389999887331 334444433 45666666665554 455777743 79999885441 11111000000
Q ss_pred CEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCc
Q 016134 224 EMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHT 296 (394)
Q Consensus 224 ~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~ 296 (394)
.-.-.++++.|- ...|++++.-+.||+||.+.+ +++.+|.--..+++++... +++++++..-+.
T Consensus 200 ---------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 200 ---------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred ---------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 011234455663 357999999999999999864 4788877667788877766 899999999999
Q ss_pred EEEEEeCCCceeeE-eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCC
Q 016134 297 IKVWFATGRGNLEA-AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372 (394)
Q Consensus 297 i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~ 372 (394)
+..||++.++.... +......+..+.. +|... +|++++.|+.|||+|+.+.+++........+++|-+.++
T Consensus 271 l~~FD~r~~kl~g~~~kg~tGsirsih~----hp~~~-~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGLKGITGSIRSIHC----HPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred hheecccCceeeccccCCccCCcceEEE----cCCCc-eEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999999877666 4444444444433 78877 999999999999999999888777777778888887654
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.18 E-value=2.7e-10 Score=106.82 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=83.0
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCce
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
.|.+.|.+-.|+ |.-|+++++||.|++|. ++|.+..++.....+|.|++|. .+.+++.+ +.+.+=.+.....
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK 178 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc
Confidence 688999999997 67799999999999998 4566666666667889999998 34444433 4566666665555
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
+.....|.. +.+++.|++... ++++|++|-..+|||...
T Consensus 179 ~i~WkAHDG----iiL~~~W~~~s~-lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 179 IIRWRAHDG----LVLSLSWSTQSN-IIASGGEDFRFKIWDAQG 217 (737)
T ss_pred eeEEeccCc----EEEEeecCcccc-ceeecCCceeEEeecccC
Confidence 556665553 334556788888 999999999999999754
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.3e-10 Score=114.86 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=138.5
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc----ceeeeccccccccccCCCeecCCCCCeEEEE
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS----TSKKTTLKNVCCHWLLGNCVRGDECRFLHSW 158 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~----~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iW 158 (394)
+..+|+....++.+-+|+......-.. .....+ ...-+. +++...+++.+.+.+ .|.+|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~------------i~~~er~~l~~~~~~g-~s~~~~~i~~gsv~~----~iivW 160 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSK------------IQSDERCTLYSSLIIG-DSAEELYIASGSVFG----EIIVW 160 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehh------------cCCCceEEEEeEEEEe-ccCcEEEEEeccccc----cEEEE
Confidence 666777777788888888776553210 111111 122222 667777888777777 89999
Q ss_pred EcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134 159 FCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTR 236 (394)
Q Consensus 159 d~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~ 236 (394)
+......+. .+.||.+.|.++.|+-||++++|.|.|.+ +|++++.+... +..| +|+.
T Consensus 161 ~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------~~~f-----------gHsa 219 (967)
T KOG0974|consen 161 KPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------CTGF-----------GHSA 219 (967)
T ss_pred eccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------cccc-----------cccc
Confidence 997332333 68999999999999999999999999999 69999988653 1112 8999
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-APMSLLCW--DQFLLSCSLDHTIKVWFATG 304 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~ 304 (394)
.|+.+.|.++++++++.|.+.++|+.. ++.+..+++|.. .|..++.. ...++|++.|+.+++||+..
T Consensus 220 Rvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 220 RVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999998899999999999999765 455557777764 57888887 45788999999999998754
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=9.7e-09 Score=100.45 Aligned_cols=232 Identities=12% Similarity=-0.040 Sum_probs=135.6
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134 93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG 172 (394)
Q Consensus 93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~ 172 (394)
...+.+||.+..+... ...+...+.... |+|++..++.....+ ....|.+||+.++.. ..+..
T Consensus 183 ~~~l~i~D~~g~~~~~-------------lt~~~~~v~~p~-wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~--~~l~~ 245 (433)
T PRK04922 183 RYALQVADSDGYNPQT-------------ILRSAEPILSPA-WSPDGKKLAYVSFER-GRSAIYVQDLATGQR--ELVAS 245 (433)
T ss_pred eEEEEEECCCCCCceE-------------eecCCCcccccc-CCCCCCEEEEEecCC-CCcEEEEEECCCCCE--EEecc
Confidence 3467888886544221 122233456666 999999888655433 345799999977632 23334
Q ss_pred cCCCeEEEEecCCCCEEE-EEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C
Q 016134 173 HEKAVSGIALPLRSDKLF-SGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R 245 (394)
Q Consensus 173 h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~ 245 (394)
+.+...+.+|+|||+.|+ +.+.++. +||+.+++...+..+.. ......|+ +
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~----------------------~~~~~~~spDG 303 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG----------------------IDTEPTWAPDG 303 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC----------------------CccceEECCCC
Confidence 455566889999998775 5566664 58888877655433322 22334554 4
Q ss_pred CeEEEEe-CCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCC
Q 016134 246 SRLCSGS-MDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 246 ~~l~sgs-~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
+.|+..+ .++. |.++|+.+++... +..+......+.|+ ++.|+..+.++ .|.+||+.+++.. .+. +...
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~ 380 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSL 380 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCC
Confidence 5555544 3443 6667777665432 32233334456776 77877765433 6999999776543 222 2111
Q ss_pred cceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEec-CCcEEEEEECC
Q 016134 318 NGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFS-KHEVRVIEIGP 371 (394)
Q Consensus 318 ~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp 371 (394)
.. ...|+|+|+.++++... ...|.++++... ....+.. ...+...+|+|
T Consensus 381 ~~----~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 DE----SPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC----CceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 11 23479999944444433 245778888543 3444433 45677778876
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=106.89 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=151.1
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCC
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPV 213 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~ 213 (394)
+.-.|.++.-+ +.-|.|-.+|..+. ++..++. -...|.++.|-.+.+++|.+-..-. |||-.. ..+......
T Consensus 137 ytrnGrhlllg----GrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-tElHClk~~ 209 (545)
T KOG1272|consen 137 YTRNGRHLLLG----GRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-TELHCLKRH 209 (545)
T ss_pred ecCCccEEEec----CCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCC-cEEeehhhc
Confidence 33344554433 33447778888776 5555543 3567888888887777777765554 576543 334333444
Q ss_pred CcEEEEEEcCC-EEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134 214 GEVYSMVVANE-MLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL 271 (394)
Q Consensus 214 ~~v~~l~~~~~-~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~ 271 (394)
..|..+.|-|. +|+++..+ .-.+.+..++-+ +..+-+|...|+|.+|.....+++..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 57888888887 44444333 122334344444 456888999999999999999999999
Q ss_pred cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134 272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349 (394)
Q Consensus 272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~ 349 (394)
..|.++|.++++. |.+++|.+.|..++|||+++-..+..+.. ..+...+++ |..| +||. +....|.||.-
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~----Sqkg--lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL----SQKG--LLAL-SYGDHVQIWKD 361 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccc----cccc--ceee-ecCCeeeeehh
Confidence 9999999999999 89999999999999999998876666655 333444444 4444 4554 45568999952
Q ss_pred C-CC---ceeEEEec--CCcEEEEEECCCC-EEEEEe
Q 016134 350 P-SF---MERGRIFS--KHEVRVIEIGPDK-LFFTGD 379 (394)
Q Consensus 350 ~-~~---~~~~~~~~--~~~v~~l~~sp~~-~l~tgs 379 (394)
. .+ .....+.+ ...|..+.|.|-. .|-.|.
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 2 21 11112222 4579999999854 444433
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=2.1e-09 Score=108.16 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=135.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEE
Q 016134 174 EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSG 251 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sg 251 (394)
.+.|..-.+..+.++++.+..+.. +||...+.......+..... +. ...+....+..-++++|
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~--------l~-------~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT--------LY-------SSLIIGDSAEELYIASG 151 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE--------EE-------eEEEEeccCcEEEEEec
Confidence 344555556667788888887777 46666555543222211110 00 00111111223468999
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeEC
Q 016134 252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLND 328 (394)
Q Consensus 252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s 328 (394)
+--+.|.+|+....+.-..+.+|.+.|.++.++ +.+++++|+|+++|+|++.+.+... ....|. ...+..++.
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs----aRvw~~~~~ 227 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS----ARVWACCFL 227 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc----ceeEEEEec
Confidence 999999999987433333678999999999996 8999999999999999999877665 333333 334455567
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
|+ .+++++.|.+.++|+...... ..+.. ...|+.++..++. .++|++.|+.+++|++...
T Consensus 228 ~n---~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN---RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc---eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 77 699999999999996654333 33333 5569999999988 9999999999999998654
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.8e-08 Score=98.66 Aligned_cols=233 Identities=10% Similarity=-0.002 Sum_probs=139.0
Q ss_pred CcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEeccc
Q 016134 94 RIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGH 173 (394)
Q Consensus 94 ~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h 173 (394)
+.+.++|.++.+.. ....+...+.... |+|++.+|+-..... .+..|++||+.++.. ..+..+
T Consensus 182 ~~l~~~d~dg~~~~-------------~lt~~~~~v~~p~-wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~--~~l~~~ 244 (435)
T PRK05137 182 KRLAIMDQDGANVR-------------YLTDGSSLVLTPR-FSPNRQEITYMSYAN-GRPRVYLLDLETGQR--ELVGNF 244 (435)
T ss_pred eEEEEECCCCCCcE-------------EEecCCCCeEeeE-ECCCCCEEEEEEecC-CCCEEEEEECCCCcE--EEeecC
Confidence 46667777654432 1223444677777 999999887665433 346899999987632 345566
Q ss_pred CCCeEEEEecCCCCEEE-EEeCCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeE
Q 016134 174 EKAVSGIALPLRSDKLF-SGSRDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRL 248 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~-sgs~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l 248 (394)
.+.+...+|+|||+.|+ +.+.++. | ||+++++...+..+........|+|+ ++.|
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spD--------------------G~~i 304 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPD--------------------GSQI 304 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCC--------------------CCEE
Confidence 77888999999998775 5666665 4 68877776555433322222333322 4555
Q ss_pred EEEeC-C--CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcce
Q 016134 249 CSGSM-D--NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGV 320 (394)
Q Consensus 249 ~sgs~-D--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~ 320 (394)
+..+. + ..|.++|+.+++. +.+..+...+....|+ ++.|+..+.+ ..|.+||+..+. ...+. ......
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~- 380 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVE- 380 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCC-
Confidence 54442 2 3688888876554 3343344455666676 7787776643 368888875443 22222 111112
Q ss_pred EEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134 321 LALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGRIFSKHEVRVIEIGP 371 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp 371 (394)
...|+|||+.++++.... ..|.++|+..+.. ..+.....+...+|+|
T Consensus 381 ---~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 381 ---GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSP 432 (435)
T ss_pred ---CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCC
Confidence 234699999444444332 3588888876544 3444444567777876
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=91.38 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=106.2
Q ss_pred CCCeEEEEecC-CC-CE-EEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C
Q 016134 174 EKAVSGIALPL-RS-DK-LFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R 245 (394)
Q Consensus 174 ~~~V~~l~~s~-~~-~~-l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~ 245 (394)
.+.+.+..+.. ++ .. |+.|-++|. +||+.++... .+.....-+. ....|..+|.++.|. -
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~------------~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES------------PNASHKQPVLSLDYASSC 217 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc------------chhhccCcceeeeechhh
Confidence 45666666533 22 23 444555565 5998887433 2221111111 111788999999987 3
Q ss_pred CeEEEEeCCCeEEEEeCCCC--ce----eEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134 246 SRLCSGSMDNTIRVWELDTL--EP----VMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~--~~----~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 319 (394)
+.=++|+.+..+..|.+... .+ ..+++...-.=..+..+++.+|+++.|++||||..++..++..+..|.....
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN 297 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence 45677888888999988642 22 2233322222244555589999999999999999999999999988885444
Q ss_pred eEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134 320 VLALGGLNDPDGKPVLICACNDNTVHLYEL 349 (394)
Q Consensus 320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~ 349 (394)
.+ +|+|+.. ++|.++.|.+|.+|++
T Consensus 298 ~v----Afspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AV----AFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred EE----EeCCCCc-hhhhccCCceEEeeec
Confidence 33 3699977 9999999999999986
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.11 E-value=1.3e-08 Score=88.08 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=85.9
Q ss_pred eEEEEeCCC-CceeEEEcC-CCCCcEEEEEc--CCEEEEE--eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134 256 TIRVWELDT-LEPVMTLND-HTDAPMSLLCW--DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP 329 (394)
Q Consensus 256 ~V~iwd~~~-~~~~~~~~~-h~~~v~~l~~~--~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 329 (394)
...||.++. ...+..+.. ..++|.+++|+ ++.|++. ..+..|.+||++ .+.+..+.. ... . .+.|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~--n--~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPR--N--TISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCc--e--EEEECC
Confidence 345555532 233444432 34579999999 6665444 457899999996 444444432 112 2 234799
Q ss_pred CCCcEEEEEeC---CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC------CCeEEEEeCC
Q 016134 330 DGKPVLICACN---DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLL 390 (394)
Q Consensus 330 ~g~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~ 390 (394)
+|+ +|++++. .|.|.+||+++.+.+....+. .++.++|+|+| +|+++.. |+.++||++.
T Consensus 111 ~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 111 DGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCC-EEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999 6766653 467999999988887776553 57899999999 7777764 7889999975
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=5.1e-10 Score=103.94 Aligned_cols=205 Identities=18% Similarity=0.156 Sum_probs=148.7
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL 241 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l 241 (394)
+.+...|..|.+.|+.|.|+..|..|+|++.|.. +||+..+....- ...+|...|...
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------------f~SGH~~NvfQa 191 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--------------------FESGHCNNVFQA 191 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--------------------cccccccchhhh
Confidence 3566778899999999999999999999999998 599998876521 111666666665
Q ss_pred Eec----CCeEEEEeCCCeEEEEeCCC-Cce--eEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 242 AVG----RSRLCSGSMDNTIRVWELDT-LEP--VMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 242 ~~~----~~~l~sgs~Dg~V~iwd~~~-~~~--~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
.|- ...+++++.||.|++=.+.. +.+ ...+..|.++|.-++.. ...|.+++.|+.++-+|++.......+
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 553 35699999999999987643 332 34456699999888877 578999999999999999987655544
Q ss_pred eccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee------EEEec-------CCcEEEEEECCCC-EE
Q 016134 312 YTHK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER------GRIFS-------KHEVRVIEIGPDK-LF 375 (394)
Q Consensus 312 ~~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------~~~~~-------~~~v~~l~~sp~~-~l 375 (394)
.... ....+.-...+.+|-..+.+++++.|..+++||.+..... .++.. .-.|++++++.++ -|
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 4322 2211222333457877778999999999999998865332 11111 2359999999877 55
Q ss_pred EEEeCCCeEEEEe
Q 016134 376 FTGDGAGMLGVWK 388 (394)
Q Consensus 376 ~tgs~Dg~I~vWd 388 (394)
+++-.|-.|+++.
T Consensus 352 LaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 352 LASYNDEDIYLFN 364 (559)
T ss_pred eeeecccceEEec
Confidence 5556677788884
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=2.6e-08 Score=94.78 Aligned_cols=232 Identities=14% Similarity=0.150 Sum_probs=120.8
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEE
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFA 228 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~ 228 (394)
+.|.|.|..+. +.+.++......-..+.|+||+++++.++.|+. ++|+.+.+.+...........++++++ ++++
T Consensus 16 ~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 16 GSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp TEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred CEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 48999998876 777888765544455789999999999999988 599988887754444555677777776 5555
Q ss_pred EecC--------C------------------CCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCcee--EEEcCCCCC
Q 016134 229 GAQD--------G------------------HTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPV--MTLNDHTDA 277 (394)
Q Consensus 229 ~~~~--------~------------------h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~--~~~~~h~~~ 277 (394)
+... . ....+.+|..+ ...++..-. -+.|-+-|....+.+ ..+. ....
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~ 173 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRF 173 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TT
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-cccc
Confidence 5433 0 11122333222 222222222 245555554433211 2222 2233
Q ss_pred cEEEEEc--CCEEEE-EeCCCcEEEEEeC---------------------------------------------------
Q 016134 278 PMSLLCW--DQFLLS-CSLDHTIKVWFAT--------------------------------------------------- 303 (394)
Q Consensus 278 v~~l~~~--~~~l~s-~s~Dg~i~vwd~~--------------------------------------------------- 303 (394)
.....|+ +++++. ...++.|-++|..
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 3344444 443322 2233344444433
Q ss_pred ----CCceeeEeecccCCcceEEEEeeECCCCCcEEEEE----eCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC
Q 016134 304 ----GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA----CNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK 373 (394)
Q Consensus 304 ----~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~ 373 (394)
..+.++.+...... +....+|+++ +|.+. ...++|.++|.++.+....+.. ...+..+.|+++|
T Consensus 254 ~d~~~wkvv~~I~~~G~g-----lFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-----LFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG 327 (369)
T ss_dssp STTTBTSEEEEEE-SSSS-------EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred chhhcCeEEEEEECCCCc-----ceeecCCCCc-cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence 33333333332111 1123489998 55554 5568999999999977777654 3359999999999
Q ss_pred -E-EEEEe-CCCeEEEEeCCCC
Q 016134 374 -L-FFTGD-GAGMLGVWKLLAK 392 (394)
Q Consensus 374 -~-l~tgs-~Dg~I~vWd~~~~ 392 (394)
. .++.- .++.|.+||..+-
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTT
T ss_pred CEEEEEEecCCCEEEEEECCCc
Confidence 3 33333 3337999998763
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.1e-08 Score=96.90 Aligned_cols=223 Identities=9% Similarity=0.070 Sum_probs=147.4
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEE-EEcCC--EEEEEecC------
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSM-VVANE--MLFAGAQD------ 232 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l-~~~~~--~l~~~~~~------ 232 (394)
++++.| .|...-+.|..+|||+|+++.+.-.- +||+......-.......+..+ -.+.| .++.-..|
T Consensus 43 eLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 43 ELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 344444 57788899999999999876665443 6888765543222222233222 22222 11111111
Q ss_pred ----C-CC----CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134 233 ----G-HT----RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV 299 (394)
Q Consensus 233 ----~-h~----~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v 299 (394)
- +. ..-.+++++ .--|+.++....|.-++++.|..+..|....+.++++..+ ..+|++|+.+|.|-.
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 1 11 122334444 1224455555678888999999999998888899999988 678999999999999
Q ss_pred EEeCCCceeeEeecccC---------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEE
Q 016134 300 WFATGRGNLEAAYTHKE---------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIE 368 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~ 368 (394)
||.++...+..+..... ...+.++ .|+.+|- -+++|..+|.|.|||++..+++....+ .-+|..+.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal--~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL--KFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEE--EecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 99998766555443221 1123333 4677776 799999999999999999988877766 55799999
Q ss_pred ECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134 369 IGPDK---LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 369 ~sp~~---~l~tgs~Dg~I~vWd~~~~ 392 (394)
|.+.+ .|++. ....++|||-.+.
T Consensus 279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 279 WQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred ccccCCCceEEec-chHHhhhcccccC
Confidence 98864 55544 4567899996654
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.09 E-value=2.1e-08 Score=86.67 Aligned_cols=112 Identities=15% Similarity=0.255 Sum_probs=79.5
Q ss_pred CCCEEEEEec--CCeEE--EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEeCCC
Q 016134 235 TRPVTCLAVG--RSRLC--SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---HTIKVWFATGR 305 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~--sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~ 305 (394)
..+|.+++|+ ++.|+ .|..+..|.+||++ .+.+.++. ...+..+.|+ |++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3458888887 45543 34567899999997 67777765 4677889998 8899998754 66999999976
Q ss_pred ceeeEeecccCCcceEEEEeeECCCCCcEEEEEe------CCCeEEEEECCCCceeEE
Q 016134 306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC------NDNTVHLYELPSFMERGR 357 (394)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs------~dg~I~iwd~~~~~~~~~ 357 (394)
+.+..... .. +..+.|+|+|+ +|+++. .|+.++||+.. |+++..
T Consensus 136 ~~i~~~~~----~~--~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 136 KKISTFEH----SD--ATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeecccc----Cc--EEEEEEcCCCC-EEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 66544331 12 23446899999 666554 38899999985 555444
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.07 E-value=1.4e-08 Score=90.28 Aligned_cols=235 Identities=17% Similarity=0.193 Sum_probs=142.0
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-EEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-MLF 227 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~ 227 (394)
++.|.+|++... +-...+..-...+.+++|+|||+.|+.-+ .|-. ||.+.+.+...+.-....+..++|+++ .++
T Consensus 70 ~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 70 DPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred cceEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 448999999876 55666677788999999999996665544 4444 799999888877777777788888888 222
Q ss_pred E-Ee-cC----------------------------------------------------CCCCCEEEEEec--CCeEEEE
Q 016134 228 A-GA-QD----------------------------------------------------GHTRPVTCLAVG--RSRLCSG 251 (394)
Q Consensus 228 ~-~~-~~----------------------------------------------------~h~~~V~~l~~~--~~~l~sg 251 (394)
+ .+ .| .-.-.+..++|+ +++|++|
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEee
Confidence 1 11 12 112345566666 5678888
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCcEEEE----E----c-CCEEEEE----eCCCcEEEEEeCC--------CceeeE
Q 016134 252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLL----C----W-DQFLLSC----SLDHTIKVWFATG--------RGNLEA 310 (394)
Q Consensus 252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~----~----~-~~~l~s~----s~Dg~i~vwd~~~--------~~~~~~ 310 (394)
+.|+.+||.+--+.+...++- |...+.+-. + . -+++..+ -.|-...+|...+ ...+..
T Consensus 229 syD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~ 307 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK 307 (447)
T ss_pred ccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence 888888887765555544432 222111111 0 0 0000000 0111222232210 111111
Q ss_pred eec---ccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134 311 AYT---HKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGML 384 (394)
Q Consensus 311 ~~~---~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I 384 (394)
+.. ...+ ..-.-..+|++|.. ++++-.+ -+.+-+||++..+....+...++|....|+|.. .|+.+.....+
T Consensus 308 lkp~tD~pnP-k~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 308 LKPPTDFPNP-KCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred ccCCCCCCCc-ccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceE
Confidence 110 0011 11111234689987 7777643 257999999998887778889999999999998 77777767778
Q ss_pred EEEeCC
Q 016134 385 GVWKLL 390 (394)
Q Consensus 385 ~vWd~~ 390 (394)
.+|...
T Consensus 386 Y~W~ps 391 (447)
T KOG4497|consen 386 YFWAPS 391 (447)
T ss_pred EEEcCC
Confidence 999753
No 236
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=8.9e-10 Score=115.93 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=148.3
Q ss_pred CCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEE
Q 016134 143 LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMV 220 (394)
Q Consensus 143 ~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~ 220 (394)
.-...+|+.|+.|++|....+.+.+.-..+-...|+.+.|+.+|+.+..+..||. +|.+......
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~------------- 2286 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT------------- 2286 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCccee-------------
Confidence 3445677788899999998775555555555699999999999999999999998 5887632222
Q ss_pred EcCCEEEEEecCCCCCCEEEEEecCCeEEEEe---CCCeEEEEeCCC---CceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134 221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS---MDNTIRVWELDT---LEPVMTLNDHTDAPMSLLCW--DQFLLSCS 292 (394)
Q Consensus 221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs---~Dg~V~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~s~s 292 (394)
+...|.....++.|-+..+++++ .++.+.+||.-- ..++. ..|.+.++++++. .++|++|+
T Consensus 2287 ---------s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2287 ---------SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred ---------ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence 23367777777777777777765 478999999632 22344 7899999999998 57999999
Q ss_pred CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCc------E--
Q 016134 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE------V-- 364 (394)
Q Consensus 293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~------v-- 364 (394)
.+|.|++||++..+....+.. + + ... ++++|+..|.|+||++.....+.++...+. .
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~---------~----~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g 2420 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------L----D-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIG 2420 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh---------h----h-hhh-eeeccCcccceEEEEccccchhhcCchhhcccchhhhcC
Confidence 999999999987655544432 2 3 233 899999999999999999877777665321 1
Q ss_pred EEEEECCCCEEEEEeCCCe
Q 016134 365 RVIEIGPDKLFFTGDGAGM 383 (394)
Q Consensus 365 ~~l~~sp~~~l~tgs~Dg~ 383 (394)
..+.+.+.+.|++++.|++
T Consensus 2421 ~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2421 MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ceeeeccCceEEEecCCCC
Confidence 2233334447888888874
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.06 E-value=8e-10 Score=103.78 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=96.4
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
.++..+.--++.|+.++|+|||++||+.+.||. |+|..+.+.+-+ ....-+...|++
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------------------mkSYFGGLLCvc 339 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---------------------MKSYFGGLLCVC 339 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---------------------HHhhccceEEEE
Confidence 344444445679999999999999999999999 688887765521 112335667777
Q ss_pred ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------C-----------------------------
Q 016134 243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------D----------------------------- 285 (394)
Q Consensus 243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~----------------------------- 285 (394)
|+ +++|++|++|-.|.||.+...+.+..=++|.+.|..|+|+ .
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 76 7899999999999999999999999989999999999986 0
Q ss_pred ---------------CEEEEEeCCCcEEEEEeCCCc
Q 016134 286 ---------------QFLLSCSLDHTIKVWFATGRG 306 (394)
Q Consensus 286 ---------------~~l~s~s~Dg~i~vwd~~~~~ 306 (394)
..|.+.+.|.++.+||+....
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 147788899999999997653
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2.2e-07 Score=90.96 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=120.2
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEMLFA 228 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 228 (394)
.|.++|.... . .+.+..+...+...+|+|||+.|+..+.+.. +||+.+++...+....+.+....|+|+
T Consensus 180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD---- 253 (430)
T PRK00178 180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD---- 253 (430)
T ss_pred EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC----
Confidence 4677777543 3 3455567788999999999999987765532 578888776554332222222333332
Q ss_pred EecCCCCCCEEEEEecCCeEE-EEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEEEE
Q 016134 229 GAQDGHTRPVTCLAVGRSRLC-SGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIKVW 300 (394)
Q Consensus 229 ~~~~~h~~~V~~l~~~~~~l~-sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~vw 300 (394)
++.|+ +.+.++ .|.+||+++++.. .+..+........|+ ++.|+..+. ++ .|.++
T Consensus 254 ----------------G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 254 ----------------GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----------------CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 44443 344444 6888899887643 455555555667777 666665553 33 57777
Q ss_pred EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t 377 (394)
|+.+++....... ..... ...|+|+|+.++++...++ .|.++|+.+++.. .+..........|+||| .|+.
T Consensus 317 d~~~g~~~~lt~~-~~~~~----~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 317 NVNGGRAERVTFV-GNYNA----RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIY 390 (430)
T ss_pred ECCCCCEEEeecC-CCCcc----ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEE
Confidence 7766554332211 11111 2346999994444443333 5888999887543 23332223356899999 4444
Q ss_pred -EeCCCe--EEEEeCC
Q 016134 378 -GDGAGM--LGVWKLL 390 (394)
Q Consensus 378 -gs~Dg~--I~vWd~~ 390 (394)
...++. |.++++.
T Consensus 391 ~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 391 ATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEecCCceEEEEEECC
Confidence 444443 5555554
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6.6e-08 Score=94.38 Aligned_cols=212 Identities=12% Similarity=-0.044 Sum_probs=120.9
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--eee--c
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--AWN--I 201 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--vWd--~ 201 (394)
..+.... |+|++.+++-.... +....|.+||+.++. . ..+....+.+...+|+|||+.|+ +.+.++. ||. +
T Consensus 196 ~~v~~p~-wSPDG~~la~~s~~-~~~~~I~~~dl~~g~-~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 196 EPIISPA-WSPDGTKLAYVSFE-SKKPVVYVHDLATGR-R-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCcccce-EcCCCCEEEEEEcc-CCCcEEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 3455666 99999998765543 334579999998773 2 22333445667899999999886 5666765 554 4
Q ss_pred CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEe--CCCCceeEEEcCCCC
Q 016134 202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWE--LDTLEPVMTLNDHTD 276 (394)
Q Consensus 202 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd--~~~~~~~~~~~~h~~ 276 (394)
.++....+..+. .......|+ ++.|+..+. ++...||. +.+++.. .+..+..
T Consensus 272 ~~~~~~~lt~~~----------------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~ 328 (427)
T PRK02889 272 DGSGLRRLTQSS----------------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGS 328 (427)
T ss_pred CCCCcEECCCCC----------------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCC
Confidence 444433332222 122334454 555554443 45556664 4444432 2222222
Q ss_pred CcEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEEC
Q 016134 277 APMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYEL 349 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~ 349 (394)
......|+ |++|+..+.++ .|.+||+.+++... +... ... ....|+|+|+.++++....+. +.+.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRD----ESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCc----cCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 33345666 78888776554 69999998765433 2211 111 133579999955554444433 555566
Q ss_pred CCCceeEEEec-CCcEEEEEECCC
Q 016134 350 PSFMERGRIFS-KHEVRVIEIGPD 372 (394)
Q Consensus 350 ~~~~~~~~~~~-~~~v~~l~~sp~ 372 (394)
. +.....+.. .+.+...+|+|-
T Consensus 403 ~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 D-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-CCceEEeecCCCCCCCCccCCC
Confidence 3 444444443 456777788873
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.99 E-value=3.5e-07 Score=89.09 Aligned_cols=207 Identities=15% Similarity=0.064 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEM 225 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~ 225 (394)
....|.++|.... . .+.+..+...+...+|+||+++|+.+..++. +||+.+++...+....+.+
T Consensus 168 ~~~~l~~~d~~g~-~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~--------- 236 (417)
T TIGR02800 168 RRYELQVADYDGA-N-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMN--------- 236 (417)
T ss_pred CcceEEEEcCCCC-C-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCc---------
Confidence 3446888887533 2 3455567778999999999999998876542 6888887655443332222
Q ss_pred EEEEecCCCCCCEEEEEec--CCeEE-EEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--
Q 016134 226 LFAGAQDGHTRPVTCLAVG--RSRLC-SGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH-- 295 (394)
Q Consensus 226 l~~~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg-- 295 (394)
.++.|+ ++.|+ +.+.++ .|.+||+.+++. ..+..+........|+ ++.|+..+. ++
T Consensus 237 -------------~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~ 302 (417)
T TIGR02800 237 -------------GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP 302 (417)
T ss_pred -------------cceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence 334454 34343 444443 588899987654 3444454444556666 677766654 33
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEECCCCceeEEEecCCcEEEEEECCC
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYELPSFMERGRIFSKHEVRVIEIGPD 372 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~ 372 (394)
.|.++|+..++.. .+........ ...|+|+++ +|+..+.++ .|.+||+.++.. ..+..........|+|+
T Consensus 303 ~iy~~d~~~~~~~-~l~~~~~~~~----~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spd 375 (417)
T TIGR02800 303 QIYMMDADGGEVR-RLTFRGGYNA----SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPN 375 (417)
T ss_pred eEEEEECCCCCEE-EeecCCCCcc----CeEECCCCC-EEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCC
Confidence 5777787665433 2222221111 234699999 666666555 789999887543 23333333456689999
Q ss_pred C-EEEEEeCCC---eEEEEeC
Q 016134 373 K-LFFTGDGAG---MLGVWKL 389 (394)
Q Consensus 373 ~-~l~tgs~Dg---~I~vWd~ 389 (394)
+ .|+..+.++ .+.+.+.
T Consensus 376 g~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 376 GRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCEEEEEEeCCCcEEEEEEEC
Confidence 9 565555443 3445443
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.8e-07 Score=88.71 Aligned_cols=285 Identities=11% Similarity=0.077 Sum_probs=171.3
Q ss_pred cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe---ecCCC---CCe
Q 016134 81 LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC---VRGDE---CRF 154 (394)
Q Consensus 81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~---~~g~~---~~~ 154 (394)
+++++++...+.+..++|.+..+.... +..-.. .+..+. ++|++.|+.+-- ..++. .--
T Consensus 42 ~S~~G~lfA~~~~~~v~i~~~~~~~~~-------------lt~~~~-~~~~L~-fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 42 YSNNGRLFAYSDNQVVKVFEIATLKVV-------------LCVELK-KTYDLL-FSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred EcCCCcEEEEEcCCeEEEEEccCCcEE-------------EEeccc-eeeeee-ecccccccccccccccccCCCCCCCc
Confidence 557777777788888888887766421 111111 455566 999999997632 12211 235
Q ss_pred EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCceeecCCCcEEEecCCCCcEEEEEEcCC----EEEEE
Q 016134 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTAWNIESSAEFSLDGPVGEVYSMVVANE----MLFAG 229 (394)
Q Consensus 155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~ 229 (394)
+.+|+++++ .....++.-...=+++.|+.|..+.+=-. .+=.++++.+-+.....-+...+..+.++|. .+++-
T Consensus 107 ~~v~~vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 107 VLVYNVETG-VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeeeccc-eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence 789999885 44444433222226889988876544222 2222677776555444445566777777665 33322
Q ss_pred ecC-----------------CC---------CCCEEEEEec--C-CeEE--EEeCCC---------eEEEEeCCCCceeE
Q 016134 230 AQD-----------------GH---------TRPVTCLAVG--R-SRLC--SGSMDN---------TIRVWELDTLEPVM 269 (394)
Q Consensus 230 ~~~-----------------~h---------~~~V~~l~~~--~-~~l~--sgs~Dg---------~V~iwd~~~~~~~~ 269 (394)
... .| ...=..+.|+ + .+|+ +..-|. ++++.+++...+..
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 211 01 1111234454 2 2333 332333 68888887445555
Q ss_pred EEcCCCCCcEEEEEc--CCEEEE--EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE--eCCCe
Q 016134 270 TLNDHTDAPMSLLCW--DQFLLS--CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA--CNDNT 343 (394)
Q Consensus 270 ~~~~h~~~v~~l~~~--~~~l~s--~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg--s~dg~ 343 (394)
.+. -.++|.++.|+ +..+++ |-.--++.|||++. ..+..+.. .+.. .. .|+|.|..++++| ..-|.
T Consensus 266 ~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~e--gpRN-~~---~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 266 PLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPE--GPRN-TA---FFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred ecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCC--CCcc-ce---EECCCCCEEEEeecCCCCCc
Confidence 544 46899999999 544444 34567899999874 44443332 2222 22 3799999444444 23588
Q ss_pred EEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC------CCeEEEEeCC
Q 016134 344 VHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLL 390 (394)
Q Consensus 344 I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~ 390 (394)
|.|||+.+.+++..+.. ..-+-++|+||| +|+|+.. |+.++||++.
T Consensus 338 mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999877777665 345667999999 7777764 7889999875
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=8.4e-07 Score=85.27 Aligned_cols=135 Identities=10% Similarity=-0.008 Sum_probs=93.6
Q ss_pred cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEE
Q 016134 244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLA 322 (394)
Q Consensus 244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 322 (394)
.++.++.++.++.+..||.++++.+..... .........+..++.++.|+.|..+|..+++.+-........ .....
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 356788888999999999999988776652 223344455788888899999999999888765433211111 11111
Q ss_pred EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-cEEEEEECCCCEEEEEeCCCeEEEE
Q 016134 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-EVRVIEIGPDKLFFTGDGAGMLGVW 387 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~v~~l~~sp~~~l~tgs~Dg~I~vW 387 (394)
+ .+. .|++++.+|.|+++|..+++.+..+.... .+..--...++.|+.++.||.|..|
T Consensus 318 i------~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 V------VGG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred E------ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 1 244 67788999999999999999988776533 3332222234578889999999876
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=4.4e-09 Score=110.88 Aligned_cols=188 Identities=16% Similarity=0.247 Sum_probs=144.1
Q ss_pred cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CC
Q 016134 171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RS 246 (394)
Q Consensus 171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~ 246 (394)
+-|-..|.++.=+|...+.+||+.||. +|.+..++.+...... +. ..|+.+.|+ |+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------GN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------Cc-chhhhhhhcccCC
Confidence 345567888888899999999999999 5888777765322211 23 667777776 88
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEe---CCCcEEEEEeCCCcee-eEeecccCCcceEE
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS---LDHTIKVWFATGRGNL-EAAYTHKEDNGVLA 322 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~ 322 (394)
.+..+..||.+.+|... .++....+.|......+.|-+..+++++ .++.+.+||....... .....|.+..++++
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred ceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 89999999999999987 6778888899999999999998888876 4789999996543222 22244555444443
Q ss_pred EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
+-|..+ +|++|+.+|.|++||++..+++..+.. +....+|++|+..|.|+||++..-
T Consensus 2344 ----~~P~~q-llisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2344 ----YAPKHQ-LLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ----EcCcce-EEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEcccc
Confidence 578888 999999999999999998777666544 442339999999999999998753
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=4.7e-07 Score=88.20 Aligned_cols=189 Identities=14% Similarity=0.024 Sum_probs=113.1
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc----eeecC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT----AWNIE 202 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~ 202 (394)
.+.... |+|++.+++.....+ ....|++||+.++. . ..+..+...+.+++|+||++.|+ +.+.++. +||+.
T Consensus 191 ~~~~p~-~Spdg~~la~~~~~~-~~~~i~v~d~~~g~-~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 191 PILSPA-WSPDGQKLAYVSFES-GKPEIYVQDLATGQ-R-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred ceeccc-CCCCCCEEEEEEcCC-CCcEEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 455556 999999998665443 23589999998762 2 23344566777899999998776 4555554 47777
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCCC
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DN--TIRVWELDTLEPVMTLNDHTDA 277 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~h~~~ 277 (394)
++....+..+... .....|+ ++.|+..+. ++ .|.++|+.+++.. .+..+...
T Consensus 267 ~~~~~~l~~~~~~----------------------~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~ 323 (417)
T TIGR02800 267 GKQLTRLTNGPGI----------------------DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY 323 (417)
T ss_pred CCCEEECCCCCCC----------------------CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC
Confidence 7765544332211 1223443 455554443 33 5778888776643 44444556
Q ss_pred cEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEEC
Q 016134 278 PMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYEL 349 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~ 349 (394)
+..+.|+ +++|+..+.++ .|.+||+.++.. ..+.... ... ...|+|+++ .|+..+.++ .+.+.+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~----~p~~spdg~-~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDE----SPSFAPNGR-MILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCC----CceECCCCC-EEEEEEeCCCcEEEEEEEC
Confidence 6677777 77888877765 788999876433 2222211 111 224699999 454444432 3555554
Q ss_pred C
Q 016134 350 P 350 (394)
Q Consensus 350 ~ 350 (394)
.
T Consensus 397 ~ 397 (417)
T TIGR02800 397 D 397 (417)
T ss_pred C
Confidence 3
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.90 E-value=9.8e-08 Score=91.06 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=140.7
Q ss_pred cCCCCEEEEEeCCCc--eeecCCCcEEEecC----CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe------cCCeEEE
Q 016134 183 PLRSDKLFSGSRDGT--AWNIESSAEFSLDG----PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV------GRSRLCS 250 (394)
Q Consensus 183 s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~----~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~------~~~~l~s 250 (394)
.|...++|....||. ||+...++...... ..+.-.+..|. |.+. .......++.+ +...++-
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~---~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSAD---YSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEec---cchHHHHhHHHHhhccCCceEEEe
Confidence 345678999999998 79999988763322 22233333332 1111 11111112211 1346888
Q ss_pred EeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134 251 GSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL 326 (394)
Q Consensus 251 gs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
|...|.|-+|+...++....+. .|.+.|.++.+. -..|.+++.|..+..|+.........+.........++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~---- 151 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC---- 151 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE----
Confidence 9999999999999999888886 588999999887 45899999999999999988877777766555444444
Q ss_pred ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCC-----C-E-EEEEeCCCeEEEEeCCC
Q 016134 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPD-----K-L-FFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~-----~-~-l~tgs~Dg~I~vWd~~~ 391 (394)
++||++ +|++++ ++|++||+++.+.+..+.+ ..+|++++|.-+ | + |.+...+.-|.+|-+..
T Consensus 152 is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 489998 888876 7899999999999999887 778999999876 5 4 44444566678887654
No 246
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=2e-08 Score=97.77 Aligned_cols=202 Identities=21% Similarity=0.225 Sum_probs=125.7
Q ss_pred EEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 166 MLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 166 ~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
.-..+.+|...|+++.|+|.. ..|++++.|-. .||+.+..... +. .+.-...-..++
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--------ys------------~~~w~s~asqVk 165 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--------YS------------TSSWRSAASQVK 165 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--------ee------------eecccccCceee
Confidence 345668999999999999854 68999999988 59998765431 11 111223345567
Q ss_pred ec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134 243 VG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 243 ~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
|+ ++.+++ +..+.|++||++.+ .++..+++|...|..+.|. ...+.+++.|++|+.||.............
T Consensus 166 wnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt- 243 (1081)
T KOG0309|consen 166 WNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT- 243 (1081)
T ss_pred ecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-
Confidence 76 444544 56678999999875 5788999999999999988 567899999999999998654322211111
Q ss_pred CCcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCC---------C-ceeEEEec-CCcEEEEEEC--------CCC--
Q 016134 316 EDNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPS---------F-MERGRIFS-KHEVRVIEIG--------PDK-- 373 (394)
Q Consensus 316 ~~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~---------~-~~~~~~~~-~~~v~~l~~s--------p~~-- 373 (394)
.....+...|-|-|+.+.+.- -.+..+.+++-++ + ..+..+.+ .+.|....|- -|.
T Consensus 244 --t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 244 --TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred --ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 111222333455444222211 1122444444332 2 23444433 2233333222 222
Q ss_pred -EEEEEeCCCeEEEEeCCC
Q 016134 374 -LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 374 -~l~tgs~Dg~I~vWd~~~ 391 (394)
.|+|=+.|..+++|-+..
T Consensus 322 fQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeEEEeecCCceEeeeccH
Confidence 899999999999998864
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.2e-06 Score=83.80 Aligned_cols=121 Identities=18% Similarity=0.103 Sum_probs=101.0
Q ss_pred ecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134 230 AQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 230 ~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
+.+.|.+.|.++.++. ..|.+++.|+.+..|+..+.+.+..+++....+.++++. +..|++++ ++|++||+++.
T Consensus 97 st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 97 STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence 3458999999999874 569999999999999999999999999988899999998 55888876 58999999999
Q ss_pred ceeeEeecccCCcceEEEEeeECCC-CCcEEEEEeCCCeEEEEECCCC
Q 016134 306 GNLEAAYTHKEDNGVLALGGLNDPD-GKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
+.+..+.+|..++..+++...++-. |.++|.+...+..|.+|-+...
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999999999888877775444433 7767777777888888977653
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=1.9e-07 Score=83.69 Aligned_cols=255 Identities=13% Similarity=0.154 Sum_probs=158.6
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccC------------CCeEEEEecCCC--CEE
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHE------------KAVSGIALPLRS--DKL 189 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~------------~~V~~l~~s~~~--~~l 189 (394)
.+.++. +.-.|.+||+++-.| -|-++.-+.. .....+++.|. ..|..+.|.+++ ..+
T Consensus 27 iis~ve-f~~~Ge~LatGdkgG----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 27 IISAVE-FDHYGERLATGDKGG----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred ceeeEE-eecccceEeecCCCC----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 455666 888899998777666 7777765433 23666777774 568999998755 456
Q ss_pred EEEeCCCc--eeecCCCcEE------EecCCCCcEEEEEE---cC-CEEEEEe-----cCCCCCCEEEEEec-CCeEEEE
Q 016134 190 FSGSRDGT--AWNIESSAEF------SLDGPVGEVYSMVV---AN-EMLFAGA-----QDGHTRPVTCLAVG-RSRLCSG 251 (394)
Q Consensus 190 ~sgs~Dg~--vWd~~~~~~~------~~~~~~~~v~~l~~---~~-~~l~~~~-----~~~h~~~V~~l~~~-~~~l~sg 251 (394)
+..+.|.+ +|.+...... ........+.++.. .+ +.++.+. ...|+--|++|.++ ....+..
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 77777887 6987654322 11223333444332 11 1222222 22789999999997 3334444
Q ss_pred eCCCeEEEEeCCCCce---eEEEcCC-----CCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCcee----eEeecccC
Q 016134 252 SMDNTIRVWELDTLEP---VMTLNDH-----TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNL----EAAYTHKE 316 (394)
Q Consensus 252 s~Dg~V~iwd~~~~~~---~~~~~~h-----~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~----~~~~~~~~ 316 (394)
+.|-.|.+|+++--.. +-.++.+ +..|++..|+ -+.|+-.+..|+|++-|+|..... ..+.....
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5688999999864221 2233333 3467888888 467777888999999999843211 11111111
Q ss_pred C---------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-CceeEEEec-------------CCc---EEEEEEC
Q 016134 317 D---------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FMERGRIFS-------------KHE---VRVIEIG 370 (394)
Q Consensus 317 ~---------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~-------------~~~---v~~l~~s 370 (394)
+ +..+ -.+.|+++|+ ++++-. =-+|+|||+.. .+++..+.. ... -..++|+
T Consensus 262 p~~rsffseiIsSI-SDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 262 PSSRSFFSEIISSI-SDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred CcchhhHHHHhhhh-hceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 1 1111 1345789998 777543 36899999953 344443332 112 3567899
Q ss_pred CCC-EEEEEeCCCeEEEEeCC
Q 016134 371 PDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 371 p~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.++ +++||+....++++++.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred CCcceEecccccceEEEecCC
Confidence 888 99999999999999854
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2.8e-06 Score=83.37 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=116.4
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC-c----eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-T----AWNIESSAEFSLDGPVGEVYSMVVANEMLFA 228 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 228 (394)
.|.++|.... . .+.+..+...+....|+|||+.|+..+.+. . +||+.+++...+....+...
T Consensus 199 ~l~i~d~dG~-~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~----------- 265 (448)
T PRK04792 199 QLMIADYDGY-N-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING----------- 265 (448)
T ss_pred EEEEEeCCCC-C-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-----------
Confidence 5667776443 2 244556678899999999999988776543 2 57887776544322221112
Q ss_pred EecCCCCCCEEEEEec--CCeEE-EEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEE
Q 016134 229 GAQDGHTRPVTCLAVG--RSRLC-SGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIK 298 (394)
Q Consensus 229 ~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~ 298 (394)
...|+ ++.|+ +.+.++. |.++|+.+++. ..+..+........|+ ++.|+..+. ++ .|.
T Consensus 266 -----------~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 266 -----------APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred -----------CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23444 44443 4455564 77789887664 3444455556677777 666665553 44 466
Q ss_pred EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC-EE
Q 016134 299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF 375 (394)
Q Consensus 299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l 375 (394)
++|+.+++...... ..... ....|+|+|+.++++...++ .|.++|+.+++.. .+..........|+||+ .|
T Consensus 334 ~~dl~~g~~~~Lt~-~g~~~----~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I 407 (448)
T PRK04792 334 RVNLASGKVSRLTF-EGEQN----LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMV 407 (448)
T ss_pred EEECCCCCEEEEec-CCCCC----cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEE
Confidence 66776555433221 11111 12246999995555544444 4556787776543 22222222345799999 44
Q ss_pred -EEEeCCCe--EEEEeCC
Q 016134 376 -FTGDGAGM--LGVWKLL 390 (394)
Q Consensus 376 -~tgs~Dg~--I~vWd~~ 390 (394)
++...++. +.+++++
T Consensus 408 ~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 408 IYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEecCCceEEEEEECC
Confidence 44444554 5555553
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.83 E-value=5.6e-08 Score=85.33 Aligned_cols=216 Identities=14% Similarity=0.142 Sum_probs=129.8
Q ss_pred CCeEEEEEcCCCceEEEEeccc---CCC---eEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGH---EKA---VSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEM 225 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h---~~~---V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~ 225 (394)
.+.|.++..... .....|.+- .-. -.++.|++.+..++++-.+|.+= ..+.....+
T Consensus 94 ~G~i~~~r~~~~-~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~-~v~~t~~~l---------------- 155 (339)
T KOG0280|consen 94 RGQIQLYRNDED-ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS-GVYETEMVL---------------- 155 (339)
T ss_pred cceEEEEeeccc-eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE-EEecceeee----------------
Confidence 346777765432 223333321 112 34567777788888877777632 001111000
Q ss_pred EEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC-CCceeEE-EcCCCCCcEEEEEc---CCEEEEEeCCCcE
Q 016134 226 LFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD-TLEPVMT-LNDHTDAPMSLLCW---DQFLLSCSLDHTI 297 (394)
Q Consensus 226 l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~-~~~~~~~-~~~h~~~v~~l~~~---~~~l~s~s~Dg~i 297 (394)
.-+.....|.-+++...|+ ++++++|+.|+.+..||++ .++.+.. .+.|...|.++..+ +.++++|+.|-.|
T Consensus 156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence 0011344788888888886 7899999999999999999 3444443 45688999999888 5699999999999
Q ss_pred EEEEeCC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE----EEec--CCcEEEEEEC
Q 016134 298 KVWFATG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG----RIFS--KHEVRVIEIG 370 (394)
Q Consensus 298 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~----~~~~--~~~v~~l~~s 370 (394)
++||.|+ ++++... .....+..+. .+|.-...|+.++.-+-.+|-+........ .... ..-+..-.|.
T Consensus 236 ~~~DtRnm~kPl~~~---~v~GGVWRi~--~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 236 RVLDTRNMGKPLFKA---KVGGGVWRIK--HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred eeeehhcccCccccC---ccccceEEEE--ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence 9999995 3333322 1113344333 455443344555566667888777653321 1111 2225555664
Q ss_pred CCC-EEEEEe-CCCeEE-EEeCC
Q 016134 371 PDK-LFFTGD-GAGMLG-VWKLL 390 (394)
Q Consensus 371 p~~-~l~tgs-~Dg~I~-vWd~~ 390 (394)
... .|+|++ .|..|+ +|---
T Consensus 311 ~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 311 SKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred cccceeeeeeccccceeeeeeec
Confidence 333 788876 677755 88543
No 251
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.7e-08 Score=90.30 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=102.3
Q ss_pred CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCcEEEEE---cCCEEEEEeCCCcEEEEEeCC
Q 016134 235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL-----EPVMTLNDHTDAPMSLLC---WDQFLLSCSLDHTIKVWFATG 304 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~vwd~~~ 304 (394)
.+.|.++.|. ++++..|...|.|..+|++.+ .+.+.+. |.+.|+++.. ++++|++.+.+|+|++||++.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 4567777775 789999999999999999864 4566665 8889988764 488999999999999999998
Q ss_pred Cce---eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-----CcEEEEEECC
Q 016134 305 RGN---LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-----HEVRVIEIGP 371 (394)
Q Consensus 305 ~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----~~v~~l~~sp 371 (394)
-++ +....+|-.....+.+. ..++.. .++++++|...+||.+.++.++.+++.. ..+.+++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~--v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAH--VKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccc--cccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 777 67777776544433332 355555 7888999999999999999998888752 2466666654
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=3.5e-05 Score=73.06 Aligned_cols=241 Identities=12% Similarity=0.165 Sum_probs=137.7
Q ss_pred CCCCeEEEEEc--CCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCC----c--eeecCC--CcEE---EecCCCCc
Q 016134 150 DECRFLHSWFC--GEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----T--AWNIES--SAEF---SLDGPVGE 215 (394)
Q Consensus 150 ~~~~~i~iWd~--~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----~--vWd~~~--~~~~---~~~~~~~~ 215 (394)
...+.|++|++ +++ .+.+.. ..-......|+++|++++|++....+ . .|++.. ++.. ........
T Consensus 10 ~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 10 GKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp SSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred CCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 34457888877 333 122233 22445667789999999999998853 2 355544 3332 12212333
Q ss_pred EEEEEEcCC--EEEEEecC---------------------------------CCCCCEEEEEec--CCeEEEEe-CCCeE
Q 016134 216 VYSMVVANE--MLFAGAQD---------------------------------GHTRPVTCLAVG--RSRLCSGS-MDNTI 257 (394)
Q Consensus 216 v~~l~~~~~--~l~~~~~~---------------------------------~h~~~V~~l~~~--~~~l~sgs-~Dg~V 257 (394)
...+++.++ .++++... .......++.++ ++++++.. ....|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 445666655 55555433 012345567776 45665543 34589
Q ss_pred EEEeCCCCc--e--eEEEc-CCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeC--CCc--eeeEeecccCC--cceEEE
Q 016134 258 RVWELDTLE--P--VMTLN-DHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFAT--GRG--NLEAAYTHKED--NGVLAL 323 (394)
Q Consensus 258 ~iwd~~~~~--~--~~~~~-~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~--~~~--~~~~~~~~~~~--~~~~~~ 323 (394)
.+|++.... . ...+. ........+.|+ +++++... .+++|.++++. .+. .+..+...... .....-
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999987654 3 22232 234556889998 56665554 57889999998 321 12222221111 111233
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCC--Cc--eeEEEec-CCcEEEEEECCCC-EEEEE-eCCCeEEEEeCCC
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPS--FM--ERGRIFS-KHEVRVIEIGPDK-LFFTG-DGAGMLGVWKLLA 391 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~--~~--~~~~~~~-~~~v~~l~~sp~~-~l~tg-s~Dg~I~vWd~~~ 391 (394)
.+.++|+|+.++++-..+++|.+|++.. +. .+..+.. ....+.++++|+| +|+++ -.++.|.+|+++.
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3446999996667777788999999932 32 3333333 4458999999999 55555 4777999998864
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=2.9e-06 Score=82.67 Aligned_cols=213 Identities=15% Similarity=0.088 Sum_probs=115.5
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEE---EEEeCCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL---FSGSRDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEML 226 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l---~sgs~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l 226 (394)
.|.+.|...+ .. +.+......+..-+|+|||+.+ ++...++. | .++.+++...+....+......|+||
T Consensus 166 ~l~~~d~dG~-~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD-- 241 (428)
T PRK01029 166 ELWSVDYDGQ-NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR-- 241 (428)
T ss_pred eEEEEcCCCC-Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC--
Confidence 5666676543 22 3344455667788999999752 34444444 4 56666665554433333334444444
Q ss_pred EEEecCCCCCCEEEEEecCCeEEEEe-----CCCeEEEEeCCCC---ceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCC
Q 016134 227 FAGAQDGHTRPVTCLAVGRSRLCSGS-----MDNTIRVWELDTL---EPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDH 295 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~~~l~sgs-----~Dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg 295 (394)
++.|+..+ .|-.+.+|++..+ +..+....+........|+ |+.|+..+ .++
T Consensus 242 ------------------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 242 ------------------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred ------------------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 33333322 1334455776642 3333333322334566777 67776655 466
Q ss_pred cEEEEEe--CC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEEecCCcEEEEEEC
Q 016134 296 TIKVWFA--TG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRIFSKHEVRVIEIG 370 (394)
Q Consensus 296 ~i~vwd~--~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~s 370 (394)
...+|.+ .. +.....+........ ...|+|||+.++++...+ ..|.+||+.+++..........+....|+
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wS 379 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSS----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWA 379 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCcc----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEEC
Confidence 6566644 32 222222322222122 234699999444444333 46999999988664433333467789999
Q ss_pred CCC-EEE-EEeC--CCeEEEEeCCCC
Q 016134 371 PDK-LFF-TGDG--AGMLGVWKLLAK 392 (394)
Q Consensus 371 p~~-~l~-tgs~--Dg~I~vWd~~~~ 392 (394)
||| .|+ +... ...|.+|++...
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCC
Confidence 999 444 4433 346778887654
No 254
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=1.9e-07 Score=93.14 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=118.9
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeC---------CCcEEEEEeCCCce
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSL---------DHTIKVWFATGRGN 307 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~---------Dg~i~vwd~~~~~~ 307 (394)
.|.=+..++.++.+|...|+|.+-|.++.+.++++.+|++.|.++...|++|++|+. |..|+|||+|+.+.
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 466677778999999999999999999999999999999999999999999999985 66789999998776
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE---CCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCC
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE---LPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGA 381 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd---~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~D 381 (394)
+..+..+..+. .+ .|.|.-...+++.+..|...+-| +.+...-....+ ...+..+++++++ .|+.|..+
T Consensus 259 l~PI~~~~~P~-fl----rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 259 LSPIQFPYGPQ-FL----RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred cCCcccccCch-hh----hhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 66555444331 11 24665555788888899999999 333311122222 5559999999999 99999999
Q ss_pred CeEEEEeCCCCC
Q 016134 382 GMLGVWKLLAKP 393 (394)
Q Consensus 382 g~I~vWd~~~~~ 393 (394)
|.|.+|.=..+|
T Consensus 334 g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 334 GHVNLWADRPQP 345 (1118)
T ss_pred CcEeeecCCCCC
Confidence 999999854444
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=2.5e-06 Score=83.53 Aligned_cols=210 Identities=11% Similarity=-0.045 Sum_probs=118.1
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc----eeecC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT----AWNIE 202 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~ 202 (394)
.+.... |+|++.+++-..... ....|.+|++.++. . ..+....+.+...+|+|||+.|+ +.+.++. +||++
T Consensus 200 ~~~~p~-wSpDG~~la~~s~~~-~~~~l~~~~l~~g~-~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 200 PILSPR-WSPDGKRIAYVSFEQ-KRPRIFVQNLDTGR-R-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred ceeeee-ECCCCCEEEEEEcCC-CCCEEEEEECCCCC-E-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 456666 999999987554332 23479999998763 2 22333344556789999999887 5555554 46888
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCC
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDA 277 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~ 277 (394)
+++...+..+.... ....|+ ++.|+..+ .++ .|.++|+.+++... +......
T Consensus 276 ~~~~~~lt~~~~~~----------------------~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAID----------------------TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY 332 (430)
T ss_pred CCCeEEcccCCCCc----------------------CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC
Confidence 77665443332222 223444 44444333 233 57777887776433 2211122
Q ss_pred cEEEEEc--CCEEEEEeCC-C--cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECC
Q 016134 278 PMSLLCW--DQFLLSCSLD-H--TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELP 350 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~ 350 (394)
.....|+ ++.|+..+.+ + .|.++|+.+++... +.. ..... ...|+|+|+.++++...++ .|.++++.
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCC----CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 2334555 7777766643 3 57888987765422 221 11111 2246999995555544443 46666775
Q ss_pred CCceeEEEec-CCcEEEEEECC
Q 016134 351 SFMERGRIFS-KHEVRVIEIGP 371 (394)
Q Consensus 351 ~~~~~~~~~~-~~~v~~l~~sp 371 (394)
.. ....+.. ...+...+|+|
T Consensus 407 g~-~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 GR-VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CC-ceEECcCCCCCcCCCccCC
Confidence 33 3333333 34567777776
No 256
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.75 E-value=1.2e-05 Score=71.85 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCceEEEEecccCCCeEEEE--ecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIA--LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
++.|..||..++ +.+....- ...+.... ..+++..+++++.++.| ||..+++.+-.......+
T Consensus 2 ~g~l~~~d~~tG-~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~----------- 68 (238)
T PF13360_consen 2 DGTLSALDPRTG-KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI----------- 68 (238)
T ss_dssp TSEEEEEETTTT-EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-----------
T ss_pred CCEEEEEECCCC-CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-----------
Confidence 458999999888 55555432 11122222 22356778888777774 888888876221111110
Q ss_pred EEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCC-----CCcEEEEEcCCEEEEEeCCCcEEEEE
Q 016134 228 AGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL-NDHT-----DAPMSLLCWDQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~-----~~v~~l~~~~~~l~s~s~Dg~i~vwd 301 (394)
... ....++.++.++.|+.|+.+|.++++.+.++ .... .......+.++.++.+..++.|..+|
T Consensus 69 -------~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 69 -------SGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp -------GSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred -------cce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEe
Confidence 011 2334677788888899999999999998874 3221 12233444588899999899999999
Q ss_pred eCCCceeeEeecccCCcce-------EEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134 302 ATGRGNLEAAYTHKEDNGV-------LALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
+++++.+-........... ...... ..++ .+..+..++. +.+ |+.+++.+-... ...+..+....++
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~ 213 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPV-ISDG--RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGG 213 (238)
T ss_dssp TTTTEEEEEEESSTT-SS--EEEETTEEEEEE-CCTT--EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCT
T ss_pred cCCCcEEEEeecCCCCCCcceeeecccccceE-EECC--EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCC
Confidence 9999887666553322111 011111 2234 3444555664 555 999998664333 3444443333344
Q ss_pred EEEEEeCCCeEEEEeCCCCC
Q 016134 374 LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 374 ~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.|+.++.++.|..||+.+..
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEEETTTEEEEEETTTTE
T ss_pred EEEEEeCCCEEEEEECCCCC
Confidence 77777799999999998764
No 257
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.74 E-value=2.9e-07 Score=82.11 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=118.2
Q ss_pred EEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCC
Q 016134 179 GIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMD 254 (394)
Q Consensus 179 ~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~D 254 (394)
-.+|+|+|+++|+++.-.. |-|.++-+...+..-- ..|.-+.|. .-.|.....|
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cl----------------------dki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCL----------------------DKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHH----------------------HHhhheeeeccceeeeeeeecc
Confidence 3689999999999998865 4666665543221111 122333443 1235666789
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 331 (394)
+.|.+|++...+-...+......+.++.|+ |+ .|.+...|-+|.+|.+.+.+..... ..+.....+ .|+|+|
T Consensus 71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~----~f~~dg 145 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGY----AFHPDG 145 (447)
T ss_pred ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeE----EECCCC
Confidence 999999999887777787788899999998 54 5666667999999999876544322 222222223 357888
Q ss_pred CcEEEEEeC------------------------------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134 332 KPVLICACN------------------------------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L 374 (394)
Q Consensus 332 ~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~ 374 (394)
+ +.+..+. ++.+.+||-.-...+..+...-.+..++|+|-+ +
T Consensus 146 ~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 146 Q-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred c-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence 7 4333221 223445554333333333335578999999977 9
Q ss_pred EEEEeCCCeEEEEe
Q 016134 375 FFTGDGAGMLGVWK 388 (394)
Q Consensus 375 l~tgs~Dg~I~vWd 388 (394)
|+.|+.|+.+||-+
T Consensus 225 lavGsyD~~lrvln 238 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLN 238 (447)
T ss_pred EEeeccchhhhhhc
Confidence 99999999988743
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=2.1e-06 Score=74.69 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=130.1
Q ss_pred eEEEEEcCCCce-EEEEecccCCCeEEEEecC-----CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134 154 FLHSWFCGEGLT-MLAKLEGHEKAVSGIALPL-----RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM 225 (394)
Q Consensus 154 ~i~iWd~~~~~~-~~~~l~~h~~~V~~l~~s~-----~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~ 225 (394)
.+-+|+..++.+ .+..+ +.+.|-| ...+||.|+.-|. +|...+.+.......
T Consensus 53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd------------- 112 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD------------- 112 (344)
T ss_pred eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-------------
Confidence 567788755532 23333 3455655 3468888888887 688876654321100
Q ss_pred EEEEecCCCCCCEE---EEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 226 LFAGAQDGHTRPVT---CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 226 l~~~~~~~h~~~V~---~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
.|...|+ ..+-..-.+..++.|.++++.++.-+.....+....-.+.++.++ ++++++.+....|..|
T Consensus 113 -------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y 185 (344)
T KOG4532|consen 113 -------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRY 185 (344)
T ss_pred -------ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEE
Confidence 1122111 111123447778899999999886544333222222236677777 7899999999999999
Q ss_pred EeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe------cCCcEEEEEECCCC
Q 016134 301 FATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF------SKHEVRVIEIGPDK 373 (394)
Q Consensus 301 d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~sp~~ 373 (394)
.+..... +..+....... -.++..|+.... .+|++..||++.|||++......... +.+.++.+.|++-|
T Consensus 186 ~id~~sey~~~~~~a~t~D--~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 186 AIDDESEYIENIYEAPTSD--HGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred EeCCccceeeeeEecccCC--CceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 9875432 22222222222 233444677766 89999999999999999764332221 25679999999877
Q ss_pred ---EEEEEeCCCeEEEEeCCCC
Q 016134 374 ---LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 374 ---~l~tgs~Dg~I~vWd~~~~ 392 (394)
+|+..-.-+.+.+-|+.+-
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cceEEEEecCcceEEEEEcccC
Confidence 6777767778888887653
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=3.9e-08 Score=92.93 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=116.8
Q ss_pred ecCCCCCCEEEEEe-c-CCeEEEEeCCCeEEEEeCCC-------CceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEE
Q 016134 230 AQDGHTRPVTCLAV-G-RSRLCSGSMDNTIRVWELDT-------LEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW 300 (394)
Q Consensus 230 ~~~~h~~~V~~l~~-~-~~~l~sgs~Dg~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vw 300 (394)
.+.+|+..|..++- + .+-+++++.|++|++|.++. ..|..+++.|..+|.++.|...+-..++.|+.|.+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 44588888888764 3 67899999999999999863 347788899999999999985443444568999999
Q ss_pred EeCCCceeeEeecccCC---cceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCceeEEEec------CCcEEEEEEC
Q 016134 301 FATGRGNLEAAYTHKED---NGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFMERGRIFS------KHEVRVIEIG 370 (394)
Q Consensus 301 d~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~------~~~v~~l~~s 370 (394)
|.--++.+..+...... ..+.++ -+-+.. +++.| +...+|+++|.+..+....+.- ..-++++++.
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEec---ccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 97766665543332221 222333 233444 55555 7889999999999876655543 2458999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCC
Q 016134 371 PDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 371 p~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
+.| .++.+-..|+|.+-|..+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCC
Confidence 999 9999999999999987764
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=4.5e-06 Score=81.92 Aligned_cols=213 Identities=10% Similarity=-0.051 Sum_probs=116.8
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEE-EeCCCc----eeecC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFS-GSRDGT----AWNIE 202 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-gs~Dg~----vWd~~ 202 (394)
.+.... |+|++.+++-..... ....|.+||+.++.. ..+....+.....+|+|||+.|+. .+.++. ++|++
T Consensus 219 ~~~~p~-wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 219 PLMSPA-WSPDGRKLAYVSFEN-RKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred cccCce-ECCCCCEEEEEEecC-CCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 344555 999999987654432 234689999876632 122222334457899999998764 556665 46777
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCCcE
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDAPM 279 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~v~ 279 (394)
+++...+..+........|+++ ++.|+..+ .++ .|.++|+.+++... +........
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpD--------------------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~ 353 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPD--------------------GKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNL 353 (448)
T ss_pred CCCeEECccCCCCccceEECCC--------------------CCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCc
Confidence 7765544333222222333322 34443333 233 56667887776433 221222233
Q ss_pred EEEEc--CCEEEEEeC-CC--cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCC
Q 016134 280 SLLCW--DQFLLSCSL-DH--TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSF 352 (394)
Q Consensus 280 ~l~~~--~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~ 352 (394)
...|+ +++|+..+. ++ .|.++|+.+++.. .+.... ... ...|+|+|+.++++...++. +.+++.. +
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~----~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G 426 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDE----SPSVAPNGTMVIYSTTYQGKQVLAAVSID-G 426 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCC----CceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 44565 677766554 34 4555677665432 222111 111 22469999955555555554 6677764 4
Q ss_pred ceeEEEec-CCcEEEEEECCC
Q 016134 353 MERGRIFS-KHEVRVIEIGPD 372 (394)
Q Consensus 353 ~~~~~~~~-~~~v~~l~~sp~ 372 (394)
.....+.. ...+...+|+|-
T Consensus 427 ~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 44444443 455777888873
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=6.4e-06 Score=77.64 Aligned_cols=247 Identities=11% Similarity=0.202 Sum_probs=144.5
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----------
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---------- 197 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---------- 197 (394)
.+..+. ++|++.+++.....| |.+|.-....++.+.. ...|..+.|+|.+++|.|-+....
T Consensus 34 p~~~~~-~SP~G~~l~~~~~~~-----V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 34 PVAYVS-ESPLGTYLFSEHAAG-----VECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred chhhee-ecCcchheehhhccc-----eEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 666677 999999999877775 8899877664444333 357899999999999999887654
Q ss_pred -------eeecCCCcEE-EecCCCCc--EE-EEEEcCC-----EE-------E--EEecCCC------CCCEEEEEecCC
Q 016134 198 -------AWNIESSAEF-SLDGPVGE--VY-SMVVANE-----ML-------F--AGAQDGH------TRPVTCLAVGRS 246 (394)
Q Consensus 198 -------vWd~~~~~~~-~~~~~~~~--v~-~l~~~~~-----~l-------~--~~~~~~h------~~~V~~l~~~~~ 246 (394)
+||+.++..+ .+.....+ .. -+.|+-+ .+ . ++..+.| ...|....|++.
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence 7999998876 23222222 12 2333322 11 0 1111111 123444444421
Q ss_pred ----eEEE-----EeCCCeEEEEeCCCCceeE------------------------------------------------
Q 016134 247 ----RLCS-----GSMDNTIRVWELDTLEPVM------------------------------------------------ 269 (394)
Q Consensus 247 ----~l~s-----gs~Dg~V~iwd~~~~~~~~------------------------------------------------ 269 (394)
.|+. ...++.++||.+..+..+.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 1221 2345566666553221110
Q ss_pred ----EEcCCCCCcEEEEEc--CCEEEEE--eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC-
Q 016134 270 ----TLNDHTDAPMSLLCW--DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN- 340 (394)
Q Consensus 270 ----~~~~h~~~v~~l~~~--~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~- 340 (394)
....-.++|..+.|. ++.++++ -.+-.+.++|++.. +. +.........+ .|+|.+. +++.++-
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~-~~~Pe~~rNT~----~fsp~~r-~il~agF~ 336 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LR-FYFPEQKRNTI----FFSPHER-YILFAGFD 336 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccc--eE-EecCCcccccc----cccCccc-EEEEecCC
Confidence 011235677777775 4444443 36777888888754 22 22222222222 2689988 5555443
Q ss_pred --CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE--e----CCCeEEEEeCCC
Q 016134 341 --DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG--D----GAGMLGVWKLLA 391 (394)
Q Consensus 341 --dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg--s----~Dg~I~vWd~~~ 391 (394)
.|.|-+||................+-+.|+||+ ++.+. + .|..|.|||+..
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 478999999887666544445566778899999 44443 2 478899999864
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.68 E-value=8.8e-07 Score=79.51 Aligned_cols=223 Identities=16% Similarity=0.201 Sum_probs=143.0
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeec-CCCcEEEe--cCCCCcEEEEEEcCC--EEEEEecC----
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI-ESSAEFSL--DGPVGEVYSMVVANE--MLFAGAQD---- 232 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~-~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~~~~---- 232 (394)
..+++.++||.+.|++...-|...-+++.+.|.+ ||-- +.++...- .....++.++.+..+ .|+++-..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3677888999999999999998899999999998 5643 34443321 223456677777666 44444333
Q ss_pred ------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEe
Q 016134 233 ------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292 (394)
Q Consensus 233 ------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s 292 (394)
.|...|..+-|+ ...+++.+.|..+.---.+.+..+.... -....+++.+.-.+...|.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeEEEEecc
Confidence 688888888887 6778888888776543344443322111 0111222222211444455
Q ss_pred CCCcEEEEEeCC--CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE--ecCCcEEEEE
Q 016134 293 LDHTIKVWFATG--RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI--FSKHEVRVIE 368 (394)
Q Consensus 293 ~Dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~ 368 (394)
..+.|.+-.+.. -..+..+..|....... .|.+... +|.+|..|..+.+||+.-..-.... .+.+.|..+.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l----~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCL----KWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEE----EEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 556655554432 23344444454433333 3577766 8999999999999999865443332 2366788877
Q ss_pred ECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 369 IGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 369 ~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+-- .+++++.||.|.+|+++.+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccce
Confidence 66655 8999999999999998754
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.67 E-value=3.1e-07 Score=80.76 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=94.8
Q ss_pred EEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 239 TCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
.++.|+ +..++++-.+|.+.+-+..... .+++++.|.-+++...|+ .+++.+|+.|+.+..||+|-++...-.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 455565 6778898899999966654443 455889999999999998 678999999999999999954322111
Q ss_pred ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCC
Q 016134 312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~ 373 (394)
....+...+.++. -+|...++|++|+.|-.|++||.++. +++..-...+.|+.+.++|.-
T Consensus 205 n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 205 NSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred cceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 1112223444443 24444459999999999999999954 455444447889999999954
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.67 E-value=7.2e-05 Score=70.12 Aligned_cols=232 Identities=10% Similarity=0.069 Sum_probs=133.3
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC---------CCc---eeecCCCcEEE-ecCCC------
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR---------DGT---AWNIESSAEFS-LDGPV------ 213 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---------Dg~---vWd~~~~~~~~-~~~~~------ 213 (394)
+.|.+.|..+. +.+.++..-..+-- + ++||++.|+.+.. +.. +||..+.+.+. +....
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 48999999886 77777665444433 4 9999999998887 332 79999998873 32211
Q ss_pred -CcEEEEEEcCC--EEEEEecC---------CCCCC-EEEEEec-CCeEEEE--------eCCCeEEEEeCCC-Cce-eE
Q 016134 214 -GEVYSMVVANE--MLFAGAQD---------GHTRP-VTCLAVG-RSRLCSG--------SMDNTIRVWELDT-LEP-VM 269 (394)
Q Consensus 214 -~~v~~l~~~~~--~l~~~~~~---------~h~~~-V~~l~~~-~~~l~sg--------s~Dg~V~iwd~~~-~~~-~~ 269 (394)
..-..++++++ .+++...+ -.... +..+..- +..++.. +.||......+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 12235667776 56655443 11111 2222221 2223332 3444444433322 221 11
Q ss_pred E---EcCC-----CCCcEEEEE-cCCEEEEEeCCCcEEEEEeCCCce-----eeEeeccc-----CCcceEEEEeeECCC
Q 016134 270 T---LNDH-----TDAPMSLLC-WDQFLLSCSLDHTIKVWFATGRGN-----LEAAYTHK-----EDNGVLALGGLNDPD 330 (394)
Q Consensus 270 ~---~~~h-----~~~v~~l~~-~~~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~s~~ 330 (394)
. +..- ..+ .... .+.++....+ |+|.+.|+...+. ...+.... .+..... ..++++
T Consensus 184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~d 258 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRA 258 (352)
T ss_pred eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCC
Confidence 1 1110 111 1111 2566666555 9999999654322 11111110 0111111 346899
Q ss_pred CCcEEEEE---------eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEe-CCCeEEEEeCCCC
Q 016134 331 GKPVLICA---------CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGD-GAGMLGVWKLLAK 392 (394)
Q Consensus 331 g~~~l~sg---------s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs-~Dg~I~vWd~~~~ 392 (394)
++.+++.. ...+.|.++|..+++.+..+.....+..++++||+ +|++.. .++.|.+.|+.+.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 98555533 11258999999999999999988999999999998 455444 6888999998764
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=3.6e-05 Score=73.97 Aligned_cols=229 Identities=16% Similarity=0.085 Sum_probs=131.1
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEE-EEEcCCEEE
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS-MVVANEMLF 227 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~-l~~~~~~l~ 227 (394)
.++.|..+|..++ +.+-.+.-.......... ++..++.++.++.+ +|.++++.+-.....+.+.+ .....+.++
T Consensus 73 ~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~ 149 (377)
T TIGR03300 73 ADGTVVALDAETG-KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVV 149 (377)
T ss_pred CCCeEEEEEccCC-cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEE
Confidence 3457888888777 445444333222222222 46778888888874 77777776532222222221 112223333
Q ss_pred EEecCC-------CCC-CEE---------------EEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC--------
Q 016134 228 AGAQDG-------HTR-PVT---------------CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-------- 276 (394)
Q Consensus 228 ~~~~~~-------h~~-~V~---------------~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-------- 276 (394)
++..++ .++ .++ +....++.++.+..++.+..+|+++++.+.+......
T Consensus 150 v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 150 VRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred EECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 333221 010 011 1112245678888899999999999987655431100
Q ss_pred ---CcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 277 ---APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 277 ---~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
...+..+.+..++.++.++.+..||..+++.+-..... ...... ..+. .++.++.||.|..+|..+++
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~------~~~~-~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA------VDDN-RLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce------EeCC-EEEEECCCCeEEEEECCCCc
Confidence 01122334778888899999999999888655433311 111111 1334 56667789999999999998
Q ss_pred eeEEEec-CC-cEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134 354 ERGRIFS-KH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 354 ~~~~~~~-~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+-.... .. ...+.... ++.|++++.+|.|.++|..+.
T Consensus 301 ~~W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred EEEccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCC
Confidence 7655422 22 22222222 348889999999999997654
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=7e-08 Score=91.27 Aligned_cols=209 Identities=16% Similarity=0.190 Sum_probs=134.9
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~ 242 (394)
-.+..+.||+..|..++--.+.+-+++++.|++ +|.++....- ....+..| ++..|..+|.++.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------~~tsaCQf--------TY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------IGTSACQF--------TYQAHKKPIHDIG 791 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------cccceeee--------EhhhccCccccee
Confidence 346778899999999988778889999999999 5998643211 01111122 3448999999998
Q ss_pred ecCCeEEEEeCCCeEEEEeCCCCceeEEEcC-----CCCCcEEEEEcC-C-EEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134 243 VGRSRLCSGSMDNTIRVWELDTLEPVMTLND-----HTDAPMSLLCWD-Q-FLLSCSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 243 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~-~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
|-.++-..++.|+-|++||.--++++..+.. ..+.|.++.-.. . +++-|+...+|+++|.+..+-...+....
T Consensus 792 fL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 792 FLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred eeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc
Confidence 8755544556789999999877776654432 223344443322 2 34445788999999999877666665543
Q ss_pred CCcc-eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEE-Ee
Q 016134 316 EDNG-VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGV-WK 388 (394)
Q Consensus 316 ~~~~-~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~v-Wd 388 (394)
.+.. ....+....+.|+ .++.+-.+|.|.+.|.++++.+..... +.....++--.|..|+....|..+.+ |.
T Consensus 872 a~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADKGN-KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred CCCCchheeEEEeccCcc-hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeeh
Confidence 2211 2222233467787 788888899999999999987665443 33333333222225555556666655 54
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=0.00018 Score=65.49 Aligned_cols=238 Identities=14% Similarity=0.157 Sum_probs=144.7
Q ss_pred CCeEEEEEcCC--CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----e--eecCCCcEEEe---cCCCCcEEEE
Q 016134 152 CRFLHSWFCGE--GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----A--WNIESSAEFSL---DGPVGEVYSM 219 (394)
Q Consensus 152 ~~~i~iWd~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----v--Wd~~~~~~~~~---~~~~~~v~~l 219 (394)
..-|++|++.+ +..-...+..+.+.++-|+|+|+.++|+++-.++. . ||-++|+...+ .....+-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 44689998863 22333444567889999999999999999988855 2 55554654422 1122233566
Q ss_pred EEcCC--EEEEEecC----------------------CCCCC----------EEEEEec--CCeEEEEeC-CCeEEEEeC
Q 016134 220 VVANE--MLFAGAQD----------------------GHTRP----------VTCLAVG--RSRLCSGSM-DNTIRVWEL 262 (394)
Q Consensus 220 ~~~~~--~l~~~~~~----------------------~h~~~----------V~~l~~~--~~~l~sgs~-Dg~V~iwd~ 262 (394)
++.++ +++++... .|... +....+. +++|++... --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 66666 66666544 23333 5555555 456666653 346899999
Q ss_pred CCCceeEEEc---CCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCC-ceeeEeecc---c----CCcceEEEEeeEC
Q 016134 263 DTLEPVMTLN---DHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGR-GNLEAAYTH---K----EDNGVLALGGLND 328 (394)
Q Consensus 263 ~~~~~~~~~~---~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~-~~~~~~~~~---~----~~~~~~~~~~~~s 328 (394)
..+++...-. ........|.|+ +++..... .+++|.+|..... ..+..+..+ . .....- .+..+
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a--aIhis 252 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA--AIHIS 252 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee--EEEEC
Confidence 8776432211 234556889999 66665555 4899999998763 333333221 1 112222 33459
Q ss_pred CCCCcEEEEE-eCCCeEEEEECCCCceeEEEec-----CCcEEEEEECCCC-EEEEEeC-CCeEEEEeCCCC
Q 016134 329 PDGKPVLICA-CNDNTVHLYELPSFMERGRIFS-----KHEVRVIEIGPDK-LFFTGDG-AGMLGVWKLLAK 392 (394)
Q Consensus 329 ~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~~-~l~tgs~-Dg~I~vWd~~~~ 392 (394)
++|+ +|.++ -....|-+|.+....-...+.. ....+...+++.+ +|+.+.+ +..|.+|.++.+
T Consensus 253 ~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 253 PDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 9999 55443 3345788888765422222221 3347899999999 6555554 457999987643
No 268
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.54 E-value=1.5e-05 Score=76.02 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=96.6
Q ss_pred CeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134 246 SRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322 (394)
Q Consensus 246 ~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 322 (394)
+++ ++-..++.|.|.|..+.+.+.++......-..+.++ ++++++++.|+.|.++|+.+.+.+..+..... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-----~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-----P 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-----E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-----c
Confidence 444 455568999999999999999998654433345566 78999999999999999999998887765432 2
Q ss_pred EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--------CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--------KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
..+.+++||++++++...++.+.|+|.++.+.+..+.. ...+.++..+|.+ ++++--+.+.|.+-|...
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 23346899995555666799999999999999888765 2357788888887 444445557777777554
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=3.2e-05 Score=75.41 Aligned_cols=210 Identities=14% Similarity=0.003 Sum_probs=115.2
Q ss_pred ccccccccCC-CeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc------eeecCCC--
Q 016134 135 KNVCCHWLLG-NCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT------AWNIESS-- 204 (394)
Q Consensus 135 ~~~~~~~~~~-~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~------vWd~~~~-- 204 (394)
|+|++..++- .....+....|.+.++.++.. ..+....+.....+|+|||+.|+..+. ++. +|++..+
T Consensus 192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 192 WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred EccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 9998865332 111112234678888876521 222233445567899999998886653 332 2555442
Q ss_pred -cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEE--eCCC-CceeEEEcCCCCC
Q 016134 205 -AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVW--ELDT-LEPVMTLNDHTDA 277 (394)
Q Consensus 205 -~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iw--d~~~-~~~~~~~~~h~~~ 277 (394)
+...+.. .+........|+ ++.|+..+ .++...|| ++.. +.....+..+...
T Consensus 270 g~~~~lt~---------------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~ 328 (428)
T PRK01029 270 GKPRRLLN---------------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN 328 (428)
T ss_pred CcceEeec---------------------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC
Confidence 1111111 111122334565 55555444 45655555 4432 2334445444456
Q ss_pred cEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECC
Q 016134 278 PMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELP 350 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~ 350 (394)
+....|+ |+.|+..+.+ ..|.+||+.+++..... ....... ...|+|||+.+++++.. ...|.++|+.
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~----~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKE----SPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCcc----ceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 6677777 7777766543 46999999877654332 2211112 23469999955445443 3568888998
Q ss_pred CCceeEEEecCCcEEEEEECCC
Q 016134 351 SFMERGRIFSKHEVRVIEIGPD 372 (394)
Q Consensus 351 ~~~~~~~~~~~~~v~~l~~sp~ 372 (394)
.++..........+...+|+|-
T Consensus 404 ~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 404 TKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCEEEeecCCCcccCceecCC
Confidence 7765444444555777888874
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=1.5e-06 Score=85.21 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=138.8
Q ss_pred eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEeccc-CCCeEEEEecCCC---CEEEEEeCCCc-eeecCC
Q 016134 129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGH-EKAVSGIALPLRS---DKLFSGSRDGT-AWNIES 203 (394)
Q Consensus 129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h-~~~V~~l~~s~~~---~~l~sgs~Dg~-vWd~~~ 203 (394)
+..+. .+|++.-++.++..| +.+-|+...+.+-+-+..- .=.|-.+.|+|.. ..+++-+.... ||++..
T Consensus 27 ~~a~s-i~p~grdi~lAsr~g-----l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 27 FNAVS-INPSGRDIVLASRQG-----LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cccee-eccccchhhhhhhcC-----eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 34444 889999999888877 6777776665554444321 2246778887743 23554444444 688754
Q ss_pred Cc--EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCC
Q 016134 204 SA--EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDA 277 (394)
Q Consensus 204 ~~--~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~ 277 (394)
.. .+.+. .-+|...|+.+.|+ +..+++++-|-.|..||+++. .++..+..-...
T Consensus 101 ss~~aIef~--------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 101 SSSNAIEFV--------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred CCccceEEE--------------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 32 22221 12889999999997 578999999999999999874 456666555566
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134 278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME 354 (394)
Q Consensus 278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~ 354 (394)
...+.|+ ...+++.+..+.|++||++.+... ..+.++......+. |..--...+.+.+.|++|+.||......
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~----fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID----FNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHH----HhhhhhhhhcccCCCCceeeeccccccc
Confidence 6788888 555666677789999999976543 34444322222121 2221112578889999999999876533
Q ss_pred e--EEEecCCcEEEEEECCCC
Q 016134 355 R--GRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 355 ~--~~~~~~~~v~~l~~sp~~ 373 (394)
. ..+....+|+.-.+.|-|
T Consensus 237 e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 237 ESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred ccceeccccCcceeccccccC
Confidence 2 233335667777777744
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.53 E-value=0.00017 Score=77.70 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=132.8
Q ss_pred CCeEEEEEcCCCceEEEEecc--c------------CCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCC
Q 016134 152 CRFLHSWFCGEGLTMLAKLEG--H------------EKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVG 214 (394)
Q Consensus 152 ~~~i~iWd~~~~~~~~~~l~~--h------------~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~ 214 (394)
...|+++|.... .+..+.+ . -.....|+++++++.|+.+...+. ++|..++....+.+...
T Consensus 589 n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~ 666 (1057)
T PLN02919 589 HNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGT 666 (1057)
T ss_pred CCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCc
Confidence 347888887643 2333322 1 123578899988887777665543 35665654433322100
Q ss_pred cEEEEEEcCCEEEEEecCC---CCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcC---------C-----
Q 016134 215 EVYSMVVANEMLFAGAQDG---HTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLND---------H----- 274 (394)
Q Consensus 215 ~v~~l~~~~~~l~~~~~~~---h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---------h----- 274 (394)
. ...+. +...+ .-..-..++++ +.++++.+.++.|++||..++... .+.+ +
T Consensus 667 ~--g~~~~------gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 667 K--GSDYQ------GGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTST 737 (1057)
T ss_pred c--cCCCC------CChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccc
Confidence 0 00000 00000 01122456775 345677778899999998776532 2211 1
Q ss_pred -CCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeEeecc-------------cCC----cceEEEEeeECCCCCc
Q 016134 275 -TDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTH-------------KED----NGVLALGGLNDPDGKP 333 (394)
Q Consensus 275 -~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~s~~g~~ 333 (394)
-.....|+++ ++ ++++-+.+++|++||+.++......... ... .......++++++|.
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 1234567777 45 5556666799999998865432111000 000 000012334688998
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEec--------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 334 VLICACNDNTVHLYELPSFMERGRIFS--------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++++-..++.|++||..++........ -.....|+++++| ++++-+.++.|++||+.++
T Consensus 817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 888888999999999987755432211 1247889999999 8888889999999999775
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.51 E-value=0.00016 Score=67.94 Aligned_cols=117 Identities=10% Similarity=0.156 Sum_probs=84.9
Q ss_pred cccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCe
Q 016134 171 EGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSR 247 (394)
Q Consensus 171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~ 247 (394)
.+|.+.|.-..+.-+++-++.|..||. |+|.++++...+...-+.|.+|..+++ +.+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~d--------------------GK~ 415 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPD--------------------GKK 415 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCC--------------------CcE
Confidence 468888999999888889999999996 799999998777666655555554433 566
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC----CcEEEEEeCCCce
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD----HTIKVWFATGRGN 307 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D----g~i~vwd~~~~~~ 307 (394)
++.+-....+-+.|+.+++....-+...+-|+.+.|+ +.++|-+--+ ..|+++|+..++.
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 7777777788888888887654444455678888888 5566655444 4688888876543
No 273
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=5.4e-07 Score=80.89 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
+.+..|-+-|++++. .+.| ..++.|.++.|...+++++.|...|.| .|++.... +....+..+
T Consensus 231 G~sqqv~L~nvetg~--~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----G~~~~a~rl-------- 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH--QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----GNGWCAQRL-------- 295 (425)
T ss_pred cccceeEEEEeeccc--cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----CCCcceEEE--------
Confidence 334456677777762 2333 367889999999999999999999995 66655411 111111111
Q ss_pred EEecCCCCCCEEEEE---ecCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCcEEEEEc----CCEEEEEeCCCcE
Q 016134 228 AGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEP---VMTLNDHTDAPMSLLCW----DQFLLSCSLDHTI 297 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~---~~~~~l~sgs~Dg~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i 297 (394)
-|...|+++. |++.+|++.+.+|+|++||++--++ +++.++|...-.-+-+. +..+++++.|...
T Consensus 296 -----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 -----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred -----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 4667777765 5688999999999999999998777 88999987654444444 5688899999999
Q ss_pred EEEEeCCCceeeEeeccc
Q 016134 298 KVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~ 315 (394)
|||.++.+..+.++....
T Consensus 371 RiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEecccCceeeccCCCC
Confidence 999999888777665443
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.50 E-value=0.00022 Score=66.93 Aligned_cols=246 Identities=11% Similarity=0.015 Sum_probs=142.2
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCceE
Q 016134 93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGLTM 166 (394)
Q Consensus 93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~~~ 166 (394)
..++.+-|.++....+.. ..|..... . .+|++.++..++. -|..+..|.+||..+. +.
T Consensus 26 ~~~v~ViD~~~~~v~g~i-----------~~G~~P~~---~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~ 89 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMT-----------DGGFLPNP---V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LP 89 (352)
T ss_pred CceEEEEECCCCEEEEEE-----------EccCCCce---e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cE
Confidence 367788888877654311 12221111 1 6677766654443 4555669999999987 66
Q ss_pred EEEecccC-------CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEE--------cCC-EE
Q 016134 167 LAKLEGHE-------KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVV--------ANE-ML 226 (394)
Q Consensus 167 ~~~l~~h~-------~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~--------~~~-~l 226 (394)
+.++.--. ..-..++++|||++|+....+.. |.|+++++.+......+...-... +.| .+
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 76665322 23347899999999998886632 799999988743222222121222 222 11
Q ss_pred EEEecC--CC----CCCEEE-----------EEe-cCCeEEEEeCCCeEEEEeCCC-----CceeEEEcC-------CCC
Q 016134 227 FAGAQD--GH----TRPVTC-----------LAV-GRSRLCSGSMDNTIRVWELDT-----LEPVMTLND-------HTD 276 (394)
Q Consensus 227 ~~~~~~--~h----~~~V~~-----------l~~-~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~~~-------h~~ 276 (394)
+....+ +. +..+.. +.. ++.+++.... |+|.+-|+.. .+.+..+.. ..+
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 111111 10 011100 011 2445555444 9999999643 233333221 122
Q ss_pred CcEEEEEc--CCEEEEEe----------CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEE-EEeCCCe
Q 016134 277 APMSLLCW--DQFLLSCS----------LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI-CACNDNT 343 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~-sgs~dg~ 343 (394)
.+.-++++ ++.++... ..+.|.++|..+.+.+..+.... . ...+.++||++++|+ +...++.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~--~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---E--IDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---c--eeeEEECCCCCeEEEEeCCCCCc
Confidence 33347776 66666632 12579999999988887776533 2 223346999994454 4446889
Q ss_pred EEEEECCCCceeEEEec
Q 016134 344 VHLYELPSFMERGRIFS 360 (394)
Q Consensus 344 I~iwd~~~~~~~~~~~~ 360 (394)
|.++|..+++.+..+..
T Consensus 324 VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 324 LYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEEECcCCeEEeeecc
Confidence 99999999999888744
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=6e-06 Score=75.67 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCcee
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNL 308 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~ 308 (394)
||-..+++++++ +++|+++..|..|||-....--.+..| -+|..-|..++.. ++.|++++.|++|++||+++++.+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 666777777776 678999999999999877654444444 4699999999988 778899999999999999999887
Q ss_pred eEee
Q 016134 309 EAAY 312 (394)
Q Consensus 309 ~~~~ 312 (394)
..+.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 5543
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=3e-06 Score=76.18 Aligned_cols=208 Identities=14% Similarity=0.189 Sum_probs=125.7
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCce--eecCC-Cc-EE----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134 173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SA-EF----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG 244 (394)
Q Consensus 173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~-~~-~~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~ 244 (394)
..+-|.++.|...|.+|+||..+|.| +.-+. .+ .. .+..|..+. ++|-+. .....|..+.|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF-------DYLkSl---eieEKinkIrw~ 93 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF-------DYLKSL---EIEEKINKIRWL 93 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc-------chhhhh---hhhhhhhhceec
Confidence 35678999999999999999999984 32211 11 11 111111110 000000 234567777885
Q ss_pred ----CCeEEEEeCCCeEEEEeCCCCce-----------------------------------eEEE-cCCCCCcEEEEEc
Q 016134 245 ----RSRLCSGSMDNTIRVWELDTLEP-----------------------------------VMTL-NDHTDAPMSLLCW 284 (394)
Q Consensus 245 ----~~~l~sgs~Dg~V~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~ 284 (394)
...++....|.+|++|.+..... .+.+ .+|+.-|.++.++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 34677778899999998853210 1111 2466778888887
Q ss_pred --CCEEEEEeCCCcEEEEEeCCCceeeEee---cccC-CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE-
Q 016134 285 --DQFLLSCSLDHTIKVWFATGRGNLEAAY---THKE-DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR- 357 (394)
Q Consensus 285 --~~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~-~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~- 357 (394)
.+.+++ ..|=.|.+|++.-...-..+. .+.. ...-+..+.-|+|...++++-.+..|+|++-|++...+...
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred CccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 344554 567899999986432222221 1111 11112223457888777899899999999999995422111
Q ss_pred --Eec--------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 358 --IFS--------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 358 --~~~--------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
++. -..|..+.|+++| +|++-+. -+|++||++-+
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence 110 2358899999999 7776644 68999998654
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=7.2e-07 Score=77.23 Aligned_cols=148 Identities=19% Similarity=0.306 Sum_probs=91.6
Q ss_pred EEEecCCeEEEEeCCCeEEEEeCCCCc-eeEEEcC-CCCCcEEEEEc-CCEEEEEe-----CCCcEEEEEeCCCceeeEe
Q 016134 240 CLAVGRSRLCSGSMDNTIRVWELDTLE-PVMTLND-HTDAPMSLLCW-DQFLLSCS-----LDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 240 ~l~~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~-h~~~v~~l~~~-~~~l~s~s-----~Dg~i~vwd~~~~~~~~~~ 311 (394)
.+...++.++++..||.+.+++.+.-. ....+.. |.+......+. ++++.++. .-+..+.|+++..+.+...
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence 333446789999999999999987511 1111111 22111111111 44444332 1234556666543222111
Q ss_pred ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC--EEEEEeCCCeEEEE
Q 016134 312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK--LFFTGDGAGMLGVW 387 (394)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~--~l~tgs~Dg~I~vW 387 (394)
+.....+.++ +-+|..++++++|+.||.+-+||.+.......+.. +.+|+.+-|+|.. .|+++++||.+..|
T Consensus 176 --~~~~~~v~~l--~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 176 --KKALDAVTAL--CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred --ccccccchhh--hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 1111122222 24777777999999999999999998855544433 7789999999987 99999999999999
Q ss_pred eCCC
Q 016134 388 KLLA 391 (394)
Q Consensus 388 d~~~ 391 (394)
|.++
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9874
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.5e-05 Score=78.08 Aligned_cols=280 Identities=13% Similarity=0.104 Sum_probs=170.6
Q ss_pred CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccc---cccCCCCccceeeeccccccccccCCCeec
Q 016134 72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASST---VSDESGDKSTSKKTTLKNVCCHWLLGNCVR 148 (394)
Q Consensus 72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 148 (394)
+-.=.+|+. .+.+|+-|+.|..++|-.+++......++...+.+. .+..-||..+|..+. |+...+-+-+...+
T Consensus 16 kL~c~~WNk--e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT-WNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 16 KLHCAEWNK--ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT-WNENNQKLTTSDTS 92 (1189)
T ss_pred eEEEEEEcc--cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE-eccccccccccCCC
Confidence 334467888 999999999999999999988765544433223322 345669999999999 99877777655555
Q ss_pred CCCCCeEEEEEcCCCceEEE-EecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEE--EecCCCCcEEEEEEcC
Q 016134 149 GDECRFLHSWFCGEGLTMLA-KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF--SLDGPVGEVYSMVVAN 223 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~--~~~~~~~~v~~l~~~~ 223 (394)
| .|.||-+-++...-. .-.-.++.|.+++|+.||..++..-.||.| =.++.++.. .+.+
T Consensus 93 G----lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg------------ 156 (1189)
T KOG2041|consen 93 G----LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG------------ 156 (1189)
T ss_pred c----eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch------------
Confidence 4 999998866522111 112346779999999999999998888872 222222111 0000
Q ss_pred CEEEEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCC-------ceeEEE----cCCCCCcEEEEEc------
Q 016134 224 EMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTL-------EPVMTL----NDHTDAPMSLLCW------ 284 (394)
Q Consensus 224 ~~l~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~-------~~~~~~----~~h~~~v~~l~~~------ 284 (394)
.....+.|+. ..++.+-..|.+.+||.+.. .+.-.. ......|..+.|.
T Consensus 157 ------------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~ 224 (1189)
T KOG2041|consen 157 ------------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP 224 (1189)
T ss_pred ------------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence 0011234442 33445556788899987531 121111 1122235566665
Q ss_pred ----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---------CeEEEEECCC
Q 016134 285 ----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---------NTVHLYELPS 351 (394)
Q Consensus 285 ----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---------g~I~iwd~~~ 351 (394)
-..|+.|-..|.+.+-.-.+......+... .. .+...|+++|. +|+.++.| +.|.+|.. -
T Consensus 225 v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~--~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp-~ 297 (1189)
T KOG2041|consen 225 VPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MK--IVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSP-Y 297 (1189)
T ss_pred CCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cE--eecceecCCCc-EEEEccCcccccCccccceEEEecc-c
Confidence 247888988998888755444333333221 12 22335799999 77777654 24555543 3
Q ss_pred CceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 352 FMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 352 ~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
++.+..+.. ...|++++|-..| .++.+ .|+.|.+=++.
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 556666655 5569999998888 55444 45555554443
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=3.6e-05 Score=73.46 Aligned_cols=256 Identities=9% Similarity=0.059 Sum_probs=142.1
Q ss_pred ceeeeccccccccccCCCeecCC-------CCCeEEEEEcCCCceEEEEecc--cCCCe-EEEEecCCCCEEEEEeCCCc
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGD-------ECRFLHSWFCGEGLTMLAKLEG--HEKAV-SGIALPLRSDKLFSGSRDGT 197 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~-------~~~~i~iWd~~~~~~~~~~l~~--h~~~V-~~l~~s~~~~~l~sgs~Dg~ 197 (394)
.|.-+. ++||..||.+-+..-. ....+.|||+.+| .+.+.+.. ....+ .-..||.|++++|--..|+.
T Consensus 251 ~Vq~id-fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~si 328 (698)
T KOG2314|consen 251 GVQFID-FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSI 328 (698)
T ss_pred Cceeee-cCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCccccceEEeccCCceeEEeccceE
Confidence 455566 9999999987654321 2358999999998 56666654 22223 33689999999998888876
Q ss_pred -eeecCCCcEEEe-cCCCCcEEEEEEcCCEEEEEecCC---------------CCC--------CE--EEEEec--CCeE
Q 016134 198 -AWNIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDG---------------HTR--------PV--TCLAVG--RSRL 248 (394)
Q Consensus 198 -vWd~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~~~---------------h~~--------~V--~~l~~~--~~~l 248 (394)
|++..+-..+.. .-....|....|+|...+.+.+.. ... .| ..|.|. |++|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 677666443321 112334556666665222222210 000 11 112232 4444
Q ss_pred EE----------EeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCC-CceeeEe
Q 016134 249 CS----------GSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATG-RGNLEAA 311 (394)
Q Consensus 249 ~s----------gs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~-~~~~~~~ 311 (394)
+. .+.--.+.|+.++... ++..+. -...|...+|. |+.+++-+. ..++.+|.+++ ......+
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 32 1111234455554433 222222 34567777776 665554432 45788898873 2222222
Q ss_pred ecccCCcceEEEEeeECCCCCcEEEEE---eCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCC-----
Q 016134 312 YTHKEDNGVLALGGLNDPDGKPVLICA---CNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGA----- 381 (394)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~g~~~l~sg---s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~D----- 381 (394)
..... ..+-.+.|+|.|+ +++.+ +..|.+.++|+.-......-.. ....+.+.|.|.| +++|++.-
T Consensus 488 k~~dk---~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 488 KELDK---KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhcc---cccceEEEcCCCc-EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence 22211 2222345799999 66654 4578899999885322222111 2346789999999 88888763
Q ss_pred -CeEEEEeCC
Q 016134 382 -GMLGVWKLL 390 (394)
Q Consensus 382 -g~I~vWd~~ 390 (394)
.--+||+++
T Consensus 564 d~GYri~tfq 573 (698)
T KOG2314|consen 564 DNGYRIFTFQ 573 (698)
T ss_pred ccceEEEEee
Confidence 344566543
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.6e-05 Score=71.00 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=84.7
Q ss_pred CCCEEEEEec--CCe--EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCCC
Q 016134 235 TRPVTCLAVG--RSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATGR 305 (394)
Q Consensus 235 ~~~V~~l~~~--~~~--l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~~ 305 (394)
.++|.++.|+ +.. ++-|-+--++.|||++ +.++..|. .++-.++-|+ |++|+.++. -|.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 5677777776 333 4445667899999997 67777764 4566778887 888888876 478999999886
Q ss_pred ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC------CCeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134 306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN------DNTVHLYELPSFMERGRIFSKHEVRVIEIGP 371 (394)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp 371 (394)
+.+..+.... . ..+.|+|||+ +|+|+.. |+.++||+... ..+....-..+...+.|-|
T Consensus 347 K~i~~~~a~~---t---t~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 347 KLIAKFKAAN---T---TVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred hhccccccCC---c---eEEEEcCCCc-EEEEEeccccEEecCCeEEEEecC-ceeehhhhhHhHhheeeee
Confidence 6665554322 1 1234799999 6666643 78899999864 3333222222566667765
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00064 Score=66.07 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=112.8
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCE-EEEEeCCC-c----eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDG-T----AWNIESSAEFSLDGPVGEVYSMVVANEMLF 227 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg-~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~ 227 (394)
.|.+=|.... .......+ . .+..-.|+|||+. ++..+.++ . ++|+.+++...+....+......|+||
T Consensus 170 ~l~~~d~dg~-~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPD--- 243 (419)
T PRK04043 170 NIVLADYTLT-YQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKD--- 243 (419)
T ss_pred eEEEECCCCC-ceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCC---
Confidence 4444444332 33333333 3 7888999999985 66555553 3 578888877655444444444445544
Q ss_pred EEecCCCCCCEEEEEecCCeE-EEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEEE
Q 016134 228 AGAQDGHTRPVTCLAVGRSRL-CSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIKV 299 (394)
Q Consensus 228 ~~~~~~h~~~V~~l~~~~~~l-~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~v 299 (394)
++.| ++.+ .+..|.++|+.+++. ..+..+........|+ |+.|+..+. .+ .|.+
T Consensus 244 -----------------G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~ 305 (419)
T PRK04043 244 -----------------GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFM 305 (419)
T ss_pred -----------------CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEE
Confidence 2222 2222 245788889887764 3444343323344566 666665553 33 5777
Q ss_pred EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134 300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIFSKHEVRVIEIGP 371 (394)
Q Consensus 300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp 371 (394)
.|+..++..+.... . ... ..|+|+|+.++++.... ..|.+.|+.++... .+..........|+|
T Consensus 306 ~dl~~g~~~rlt~~--g-~~~----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SP 377 (419)
T PRK04043 306 KKLNSGSVEQVVFH--G-KNN----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSS 377 (419)
T ss_pred EECCCCCeEeCccC--C-CcC----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECC
Confidence 78876655333321 1 111 14699999555555433 36888898877543 333322333588999
Q ss_pred CC-EEEEEe-CCCe--EEEEeCC
Q 016134 372 DK-LFFTGD-GAGM--LGVWKLL 390 (394)
Q Consensus 372 ~~-~l~tgs-~Dg~--I~vWd~~ 390 (394)
|| .|+... ..+. +.+.+++
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecC
Confidence 99 444433 3333 4444443
No 282
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.34 E-value=0.0015 Score=61.89 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=132.0
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCC---ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCC-cEE
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEG---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESS-AEF 207 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~-~~~ 207 (394)
+++.+.+|-.....+...+.|..|++... .+.+............++++|++++|+++.. ++. ++++... ...
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~ 123 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG 123 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence 55666665444333235668888887543 3444554434455667999999999999986 444 5888763 322
Q ss_pred Ee---c-----------CCCCcEEEEEEcCC--EEEEEecC----------CCC--------------CCEEEEEec--C
Q 016134 208 SL---D-----------GPVGEVYSMVVANE--MLFAGAQD----------GHT--------------RPVTCLAVG--R 245 (394)
Q Consensus 208 ~~---~-----------~~~~~v~~l~~~~~--~l~~~~~~----------~h~--------------~~V~~l~~~--~ 245 (394)
.. . ........+.++|+ .+++.... .+. ..-..+.|+ +
T Consensus 124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS
T ss_pred eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc
Confidence 11 1 12355778899987 56554433 121 223345665 3
Q ss_pred CeE-EEEeCCCeEEEEeCC--CCc--eeEEEcCC------CCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC-CceeeE
Q 016134 246 SRL-CSGSMDNTIRVWELD--TLE--PVMTLNDH------TDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG-RGNLEA 310 (394)
Q Consensus 246 ~~l-~sgs~Dg~V~iwd~~--~~~--~~~~~~~h------~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~-~~~~~~ 310 (394)
+++ ++.-.+++|.++++. +++ .++.+... ......|.++ +++|+++. .++.|.+|++.. ...+..
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 455 444568899999987 333 23333221 1246677777 77776655 577899999943 223333
Q ss_pred eeccc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC--CCCceeEEEe--cCCcEEEEEE
Q 016134 311 AYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL--PSFMERGRIF--SKHEVRVIEI 369 (394)
Q Consensus 311 ~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~--~~~~~~~~~~--~~~~v~~l~~ 369 (394)
+.... ...... .+.++|+|+.++++.-.++.|.+|++ .++.+...-. .-....||.|
T Consensus 284 ~~~~~~~G~~Pr--~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 284 VQTVPTGGKFPR--HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEESSSSEE--EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCCcc--EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 22221 112222 33469999955555557789999976 4555443322 2455667665
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.33 E-value=3.6e-06 Score=73.00 Aligned_cols=67 Identities=25% Similarity=0.496 Sum_probs=56.7
Q ss_pred EEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCC
Q 016134 238 VTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATG 304 (394)
Q Consensus 238 V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~ 304 (394)
|.+++-+ .+++++|+.||.+-+||.+... ++..++.|..+++.+.|+ +..|+++++||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 6666665 4678999999999999998864 445668899999999999 67999999999999999764
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.31 E-value=0.00041 Score=67.10 Aligned_cols=135 Identities=7% Similarity=-0.041 Sum_probs=91.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEEE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLAL 323 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~ 323 (394)
++.++.++.++.+..+|+.+++.+.+... .....+...+..|+.++.++.+..+|..+++.+-........ .....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 56778888899999999999987765432 222334556788888899999999999887654322211111 111111
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEE-EEECCCCEEEEEeCCCeEEEEeC
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRV-IEIGPDKLFFTGDGAGMLGVWKL 389 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~-l~~sp~~~l~tgs~Dg~I~vWd~ 389 (394)
. ++ .|+.++.||.|+++|..+++.+..... ...+.+ ..+ .++.|+.++.||.|..+++
T Consensus 334 ----~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ----Y-NG--YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ----E-CC--EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 1 33 567788999999999999988877654 233332 222 2458889999999988875
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.31 E-value=1.3e-05 Score=73.49 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=90.6
Q ss_pred CCeEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCcEEEEEc--CCEEEE---EeCCCcEEEEEeCCCceeeEeeccc
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEP----VMTLNDHTDAPMSLLCW--DQFLLS---CSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s---~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
+.+||++..+....+++++.... +.... -....+++.+. ...... .+....+.+|.... .+...+.+|-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhhhhh
Confidence 46677777777777777654332 22221 12223333333 222222 33444555565544 3334444444
Q ss_pred CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.-. +.+.++||.+ +|+++..|..|+|-.++.-..+..+.. .+-|..++.-++..|++++.|++|++||+.+..
T Consensus 152 Sml----~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 152 SML----LDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhh----heeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 322 2344699998 999999999999998887655555543 556999999988899999999999999998753
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.1e-06 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.620 Sum_probs=33.7
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eee
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWN 200 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd 200 (394)
+++.++++|++.|++|+|+|++++|++++.|+. +||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 678999999999999999999999999999999 576
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.27 E-value=0.003 Score=59.66 Aligned_cols=135 Identities=11% Similarity=0.032 Sum_probs=95.7
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
+|...|.-..+. ++-++.|..|| .+-|||.++++. ..++..-+.|.++..+ |++++.+.....|.+.|+.++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 566666555554 56788999999 999999987664 4455667889999888 78899988888999999988765
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
...-.. ... +.....|+|+++ ++|-+--+| .|++||+..++....-.....=.+-+|.||+
T Consensus 436 ~~idkS--~~~--lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 436 RLIDKS--EYG--LITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred eEeccc--ccc--eeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 433222 222 333445799998 888775554 6899999987665444333344566788888
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.26 E-value=0.00054 Score=60.72 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=90.6
Q ss_pred EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-------CCCCcEEEEEc--------CCEEEEEeCCCcEEEE
Q 016134 238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-------HTDAPMSLLCW--------DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-------h~~~v~~l~~~--------~~~l~s~s~Dg~i~vw 300 (394)
=..++|+ +.+||.+...|+|++||+.. ..+..+.. -..+|..+.|. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3456776 56899999999999999974 44444432 22456666665 1256666778888877
Q ss_pred EeCCC--ce---eeEeeccc-CCcceEEEEeeECCCCCcEEEEEeCCCe----------EEEEECCCCcee---------
Q 016134 301 FATGR--GN---LEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNT----------VHLYELPSFMER--------- 355 (394)
Q Consensus 301 d~~~~--~~---~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~----------I~iwd~~~~~~~--------- 355 (394)
-+..+ +. ...+.... .+..+.+ +.|+|..+.+|+.|+.... +.-|.+-++.+-
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~--~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~ 202 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINS--AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED 202 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeE--EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence 76322 11 11111111 1223333 3478888744444443322 455554221100
Q ss_pred --------------EE--Ee-----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 356 --------------GR--IF-----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 356 --------------~~--~~-----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.. +. ....|..|..+||| .||+...+|.|.+|++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 00 00 14569999999999 999999999999999864
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=2.7e-06 Score=52.66 Aligned_cols=37 Identities=35% Similarity=0.367 Sum_probs=31.5
Q ss_pred CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 016134 265 LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 265 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd 301 (394)
++++.++++|...|.+|+|+ +.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36778888899999999888 67899999999999987
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.23 E-value=0.002 Score=68.52 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=90.4
Q ss_pred EEEEEec--CCeEEEEeC---C---CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCC
Q 016134 238 VTCLAVG--RSRLCSGSM---D---NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATG 304 (394)
Q Consensus 238 V~~l~~~--~~~l~sgs~---D---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~ 304 (394)
-..|+|- |.++|+.+- . ..+|||+-+ |+...+-+.-.+--.+++|- |++||+... ...|.+|. ++
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rN 289 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RN 289 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cC
Confidence 3456775 678887764 2 589999965 66555544333334456665 888888765 34455665 34
Q ss_pred CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEe--cCCcEEEEEECCCC--EEEEE
Q 016134 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIF--SKHEVRVIEIGPDK--LFFTG 378 (394)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~--~~~~v~~l~~sp~~--~l~tg 378 (394)
+-....+...............|++++. +|+.--.|. |.+|-..+.. +.+.+. ....+..+.|+|.. .|...
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 4333333322111222224456899999 888766554 9999988864 233333 24446669999987 67777
Q ss_pred eCCCeEEEEeC
Q 016134 379 DGAGMLGVWKL 389 (394)
Q Consensus 379 s~Dg~I~vWd~ 389 (394)
..+|.+..+++
T Consensus 368 t~~g~~~~~~~ 378 (928)
T PF04762_consen 368 TSNGQYEIYDF 378 (928)
T ss_pred ecCCcEEEEEE
Confidence 77677765543
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00036 Score=69.34 Aligned_cols=215 Identities=12% Similarity=0.078 Sum_probs=138.8
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCC------------CEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS------------DKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYS 218 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~------------~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~ 218 (394)
.|.+-|..+- +.++.+.-|+..|+.+.|.|.. -+||++...|. +||...+..+ .+.
T Consensus 36 lV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-------- 106 (1062)
T KOG1912|consen 36 LVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-------- 106 (1062)
T ss_pred eEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------
Confidence 4566666554 7889999999999999997631 13555555565 5998777654 232
Q ss_pred EEEcCCEEEEEecCCCCCCEEEEEec------CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEE
Q 016134 219 MVVANEMLFAGAQDGHTRPVTCLAVG------RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLL 289 (394)
Q Consensus 219 l~~~~~~l~~~~~~~h~~~V~~l~~~------~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~ 289 (394)
.|.+++..++|- ...|+.-....+|.+|+..+|+.+.....-.....++.++ ...+.
T Consensus 107 --------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 107 --------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred --------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 345566666662 2567777778899999999999887766444555567766 34444
Q ss_pred EEeCCCcEEEEEeCC-------CceeeEeecccC-----------------Cc----ceEEEEeeECCCCCcEEEEEeCC
Q 016134 290 SCSLDHTIKVWFATG-------RGNLEAAYTHKE-----------------DN----GVLALGGLNDPDGKPVLICACND 341 (394)
Q Consensus 290 s~s~Dg~i~vwd~~~-------~~~~~~~~~~~~-----------------~~----~~~~~~~~~s~~g~~~l~sgs~d 341 (394)
.-+..|.+.+-+.-. ++..+....|.. +. ..++...+|+|.-++.++. ...
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~p 251 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFP 251 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-Eec
Confidence 444556655554321 111111111111 00 0112234567776655543 346
Q ss_pred CeEEEEECCCCceeEEEec-CCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134 342 NTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 342 g~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.|+|++-...+..+.- ...+.-+.|-|+. .|++.-.||.+.+|--.+.
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 7899999998888877766 5557788888886 8999999999999976654
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.18 E-value=0.00033 Score=74.33 Aligned_cols=225 Identities=11% Similarity=0.047 Sum_probs=131.2
Q ss_pred eeeccccccccccCCCeecCCC--CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecC
Q 016134 130 KKTTLKNVCCHWLLGNCVRGDE--CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIE 202 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~~--~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~ 202 (394)
..++ |.-+|.|+|....+-.. -+.||||+-+ + .+..+-+.-.+-=.+++|.|.|++||+...-.. +|.-.
T Consensus 213 ~~IS-WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 213 VRIS-WRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred eEEE-ECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 3455 88999999988874443 5899999976 3 444444433444457899999999998876322 12221
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcC-CCCC
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLND-HTDA 277 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~-h~~~ 277 (394)
.-+.-.+.- -.+.....|..|.|+ ++.|+..-.|. |.+|-..+.. +.+.+.- ....
T Consensus 290 GLrhgeF~l------------------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 290 GLRHGEFTL------------------RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred CcEeeeEec------------------CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence 111111100 011234567778886 56677766554 9999887643 3333332 2233
Q ss_pred cEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC---
Q 016134 278 PMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS--- 351 (394)
Q Consensus 278 v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~--- 351 (394)
+..+.|+ ...|.....++.+..++..-..... ... .|+....+++- +..++.+-.++.
T Consensus 351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s--~~~-------------~~~D~g~vaVI-DG~~lllTpf~~a~V 414 (928)
T PF04762_consen 351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS--PGS-------------SPNDNGTVAVI-DGNKLLLTPFRRAVV 414 (928)
T ss_pred CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec--CCC-------------CccCceEEEEE-eCCeEEEecccccCC
Confidence 4558888 4566666666777777653211000 000 11111011111 123445544443
Q ss_pred --CceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 352 --FMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 352 --~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
......+.....|..++|++++ .+++-..||.|.+|.+..+
T Consensus 415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 3334455557899999999998 8999999999999986554
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=79.01 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc---------------eeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134 235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE---------------PVMTLNDHTDAPMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg 295 (394)
.....|+.|+ .+++++|+.||.++|..+.+.. .-+++++|...|.-+.|+ .+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567888998 6899999999999999886421 235778999999999999 56788888999
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L 374 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~ 374 (394)
.|.+|-+-.+.-...+..... ..+..+.+|+.+|. -+...-.||.|.+=.+........-........+.|++|. .
T Consensus 94 lIiVWmlykgsW~EEMiNnRn--KSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRN--KSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcC--ccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence 999998877654443333332 23333445788888 6777778888887766654333222223345678899998 7
Q ss_pred EEEEeCCCeEEEEeCC
Q 016134 375 FFTGDGAGMLGVWKLL 390 (394)
Q Consensus 375 l~tgs~Dg~I~vWd~~ 390 (394)
++.+-..|.+.++|.+
T Consensus 171 ~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQ 186 (1189)
T ss_pred HHhhhcCCcEEEeccc
Confidence 7777788999999854
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.0065 Score=54.55 Aligned_cols=198 Identities=14% Similarity=0.082 Sum_probs=114.7
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEec-CCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALP-LRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA 230 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s-~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 230 (394)
+.|+.|+..++......+.+ ...+++. +++.++++ ..++. ++|..+++...+... .
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~-----------------~ 79 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADL-----------------P 79 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEE-----------------E
T ss_pred CEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeec-----------------c
Confidence 38888998877433333322 7778887 56555544 44554 678888765432111 0
Q ss_pred cCC-CCCCEEEEEec--CCeEEEEeCC--------CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCc
Q 016134 231 QDG-HTRPVTCLAVG--RSRLCSGSMD--------NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHT 296 (394)
Q Consensus 231 ~~~-h~~~V~~l~~~--~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~ 296 (394)
.+. .....+.++++ +++.++.... +.|..++.. ++...... .-.....++|+ ++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 011 23345556665 4444443322 557777776 45433333 34556888888 56554 5667888
Q ss_pred EEEEEeCCCce-e---eEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-CcEEEEEEC
Q 016134 297 IKVWFATGRGN-L---EAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-HEVRVIEIG 370 (394)
Q Consensus 297 i~vwd~~~~~~-~---~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~s 370 (394)
|..+++..... + ..+....... ..-. ++++.+|. +.++....+.|.+++.. ++.+..+... ..+++++|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 99999864332 2 2222222211 1222 23588998 77777788999999988 7777777664 689999994
Q ss_pred -CCC--EEEEE
Q 016134 371 -PDK--LFFTG 378 (394)
Q Consensus 371 -p~~--~l~tg 378 (394)
++. +++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 554 55554
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.08 E-value=2.2e-05 Score=69.79 Aligned_cols=209 Identities=14% Similarity=0.161 Sum_probs=122.2
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCce--eecCCCc-E-E----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134 173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA-E-F----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG 244 (394)
Q Consensus 173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~-~-~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~ 244 (394)
....|+++.|...|.+|++|...|.| +.-+... + . .+.+|..+.- +|- +. .-...|..+.|-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD-------YLk--Sl-eieEKin~I~w~ 94 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD-------YLK--SL-EIEEKINAIEWF 94 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh-------hhh--hc-cHHHHhhheeee
Confidence 35679999999999999999988874 3322211 1 0 1222221110 000 00 123456677774
Q ss_pred ----CCeEEEEeCCCeEEEEeCCCCc-------------------e-----------------------eEEE-cCCCCC
Q 016134 245 ----RSRLCSGSMDNTIRVWELDTLE-------------------P-----------------------VMTL-NDHTDA 277 (394)
Q Consensus 245 ----~~~l~sgs~Dg~V~iwd~~~~~-------------------~-----------------------~~~~-~~h~~~ 277 (394)
.+.++..+.|.+|++|.+.... + .+.. ..|..-
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 2457777889999999885320 0 0001 235556
Q ss_pred cEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEe---ecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134 278 PMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAA---YTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352 (394)
Q Consensus 278 v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~ 352 (394)
|.++.+. .+..+..+.|=+|.+|++.-......+ ..+... ..-+.....|+|....++.-.+..|.|++-|++..
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 7777777 344444456788999988643322222 222111 11111233468877767777888999999999853
Q ss_pred ceeE------E--Eec---------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 353 MERG------R--IFS---------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 353 ~~~~------~--~~~---------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+.. . +.. -..|..+.|+++| ++++-+ --+|+|||++..
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccc
Confidence 2111 0 100 3358889999999 666554 468999998754
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.0012 Score=58.75 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=94.3
Q ss_pred cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEe-ecccCCcc-eE
Q 016134 244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAA-YTHKEDNG-VL 321 (394)
Q Consensus 244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~-~~ 321 (394)
.++.+++++.++.|..||..+++.+.++.............+..++.+..++.|..+|+.+++.+-.. ........ ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 57788888999999999999999988776522211223445777888888899999999998887763 32211111 11
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-c----------EEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-E----------VRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~----------v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
... ....+. .++.+..++.|..+|+++++.+....... . +..-....++.++.++.++.+..+|+.
T Consensus 115 ~~~--~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 115 SSS--PAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp -SE--EEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred ccC--ceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 111 111255 67777779999999999999887775522 1 122223334477777777753333776
Q ss_pred CC
Q 016134 391 AK 392 (394)
Q Consensus 391 ~~ 392 (394)
+.
T Consensus 192 tg 193 (238)
T PF13360_consen 192 TG 193 (238)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.05 E-value=0.0037 Score=67.72 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCceEEEEeccc-----------------CCCeEEEEecCC-CCEEEEEeCCCce--eecCCCcEEEecCC
Q 016134 153 RFLHSWFCGEGLTMLAKLEGH-----------------EKAVSGIALPLR-SDKLFSGSRDGTA--WNIESSAEFSLDGP 212 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h-----------------~~~V~~l~~s~~-~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~ 212 (394)
..|+++|..++ .+.++.+- -..-.+++|+|+ +..+++.+.++.| ||..++....+.+.
T Consensus 646 ~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 646 HALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred ceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 47888888665 23333220 112367999994 5555666666665 66666654332221
Q ss_pred CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEc-------------C---
Q 016134 213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLN-------------D--- 273 (394)
Q Consensus 213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~-------------~--- 273 (394)
.... ..... . .....-.....|+++ ++ ++++-+.++.|++||++++....... .
T Consensus 724 G~~~---~~~g~-~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 724 GYER---NLNGS-S---GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred Cccc---cCCCC-c---cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 1000 00000 0 000111234567776 44 55666678999999998765321110 0
Q ss_pred -----CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC---------CcceEEEEeeECCCCCcEEEE
Q 016134 274 -----HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE---------DNGVLALGGLNDPDGKPVLIC 337 (394)
Q Consensus 274 -----h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~~l~s 337 (394)
.-.....++++ +.++++-..+++|++||..++........... ........++++++|+ ++++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa 875 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA 875 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE
Confidence 01124567776 67788888899999999876544322211000 0000111234588998 8888
Q ss_pred EeCCCeEEEEECCCCce
Q 016134 338 ACNDNTVHLYELPSFME 354 (394)
Q Consensus 338 gs~dg~I~iwd~~~~~~ 354 (394)
-+.++.|++||+.++..
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 89999999999988754
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.04 E-value=0.00021 Score=62.52 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=96.8
Q ss_pred CCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCcEEE---EEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPV-MTLNDHTDAPMSL---LCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV 320 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~h~~~v~~l---~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 320 (394)
..+|+.|+.-|...+|...+.+-. +....|...|+-+ +-..-.+..++.|.++++.++..+...... |.....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~- 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLT- 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccc-
Confidence 357999999999999999875533 3333344433222 112445677888999999988654333222 222122
Q ss_pred EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-EE-Eec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMER-GR-IFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~-~~-~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.....++++++ ++++.+....|..|.+....+. .. ... .+.=.+..|+... .+|++..||.+.|||+..-
T Consensus 161 -~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 161 -QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred -eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 22345699999 8999999999999998765322 22 222 4456778899888 9999999999999998753
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00033 Score=64.64 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=65.5
Q ss_pred EEEEEcCCCceEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231 (394)
Q Consensus 155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 231 (394)
+++.+..+ ++..+.+.+|...|.+|+|+|..+ +|..++.+.. |.|+++...+. +.
T Consensus 175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---------------------sy 232 (463)
T KOG1645|consen 175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---------------------SY 232 (463)
T ss_pred eEEeccCC-cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---------------------he
Confidence 55555543 355667788999999999999877 6777787777 68888776553 22
Q ss_pred CCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCC
Q 016134 232 DGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDT 264 (394)
Q Consensus 232 ~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~ 264 (394)
+.+ ..+++++|+ .++|+.|-..|.|.|||++.
T Consensus 233 ~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 233 IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 234 678888886 56799999999999999985
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.0052 Score=56.21 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=122.9
Q ss_pred eeeccccccccccCCCeecCCCCCeEEEEEcCC-C-ceEEEEecccCCC----------eEEEEecCCCCEEEEEe--CC
Q 016134 130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-G-LTMLAKLEGHEKA----------VSGIALPLRSDKLFSGS--RD 195 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~-~~~~~~l~~h~~~----------V~~l~~s~~~~~l~sgs--~D 195 (394)
..++ .++.+.++.++.+.+ +.|.++-+.. + ......+..|.+. +....|.|++++|++.. .|
T Consensus 92 ~yvs-vd~~g~~vf~AnY~~---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVS-VDEDGRFVFVANYHS---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred eEEE-ECCCCCEEEEEEccC---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 5666 888999998887766 4899998854 2 1222233446666 89999999999999886 45
Q ss_pred Cc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEE-eCCCeEEEEeCCCC-c---e
Q 016134 196 GT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSG-SMDNTIRVWELDTL-E---P 267 (394)
Q Consensus 196 g~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~~-~---~ 267 (394)
+. +++++.+......... + .-...-.-|.|+ +++.+.. -.+++|-+|..... . +
T Consensus 168 ri~~y~~~dg~L~~~~~~~------------v------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAE------------V------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eEEEEEcccCccccccccc------------c------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 54 6888877654211100 0 011222334555 3444333 34889999988762 2 2
Q ss_pred eEEEcC----CC--CCcEEEEEc--CCEEEEEeC-CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134 268 VMTLND----HT--DAPMSLLCW--DQFLLSCSL-DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338 (394)
Q Consensus 268 ~~~~~~----h~--~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg 338 (394)
++.+.. .. ....+|..+ |++|.++.. ...|-+|.+....-...+...........-.+.+++.++.++++.
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 333211 12 233444444 788887754 457888887654332222222211122122334689999444444
Q ss_pred eCCCeEEEEECCCCceeEEEe----cCCcEEEEEEC
Q 016134 339 CNDNTVHLYELPSFMERGRIF----SKHEVRVIEIG 370 (394)
Q Consensus 339 s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~s 370 (394)
-.+..|.+|......-..... ......||.|.
T Consensus 310 q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 310 QKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 445679999776542222221 13345566654
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=2.7e-05 Score=77.36 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=103.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134 235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTH 314 (394)
Q Consensus 235 ~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 314 (394)
...+.|.++++..|+-|+.+|.|++++.. +.+ .+...|+.. .-.|.++++|+.||+|.|-.+-+.+...++..
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df- 111 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF- 111 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence 45677778889999999999999999976 344 444446544 33499999999999999998887766554432
Q ss_pred cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE---ecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI---FSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
..+...+++...|+......+++|+.-| +.++.-.-....... ...+.|.++.|..+ ++|-++.+| |+|||+.+
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCC-cEEEeccc
Confidence 3334555552222222333788899888 887764432222222 23778999999755 888888777 89999887
Q ss_pred CC
Q 016134 392 KP 393 (394)
Q Consensus 392 ~~ 393 (394)
+.
T Consensus 189 ~~ 190 (846)
T KOG2066|consen 189 RQ 190 (846)
T ss_pred cc
Confidence 64
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.6e-05 Score=71.03 Aligned_cols=224 Identities=11% Similarity=0.138 Sum_probs=145.6
Q ss_pred cceeeeccccccccccCCCeecCCCCCeEEEEEcC--CCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeec
Q 016134 127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNI 201 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~ 201 (394)
-.|+.+ +.....++.+++.+| .++.|... .+.+.+..+..|...|.+++.+-++.++.|.+. |.. ++|+
T Consensus 10 d~i~hv--~~tka~fiiqASlDG----h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 10 DVITHV--FPTKAKFIIQASLDG----HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ceeeeE--eeehhheEEeeecch----hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 345555 455566777777777 89999864 456788888999999999999999999999777 776 5776
Q ss_pred CCCcEE---Eec----------CCCCcEEEEEEcCC-----EEEEEecC---------CCCCCEEEEEec--CCeEEEEe
Q 016134 202 ESSAEF---SLD----------GPVGEVYSMVVANE-----MLFAGAQD---------GHTRPVTCLAVG--RSRLCSGS 252 (394)
Q Consensus 202 ~~~~~~---~~~----------~~~~~v~~l~~~~~-----~l~~~~~~---------~h~~~V~~l~~~--~~~l~sgs 252 (394)
++-... .+. .....+..++.+.- .++-+..+ -|..+|.++.+. ++.+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 654432 111 12222223333211 11111111 588999999997 67788888
Q ss_pred CCCeEEEEeCCC------CceeE---------EEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134 253 MDNTIRVWELDT------LEPVM---------TLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 253 ~Dg~V~iwd~~~------~~~~~---------~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 315 (394)
..|.|.-|.... .+... .+........++.|+ +..+.+-+.|..|+++++++++.++.+....
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 899999998872 11111 112234567788887 8889999999999999998876544332110
Q ss_pred C-----------------------------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134 316 E-----------------------------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI 358 (394)
Q Consensus 316 ~-----------------------------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~ 358 (394)
. .........+|+..++ +|+-++.=| |++.++.++.....+
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-FLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-EEEeeccee-EEEEEeecCeEEEEe
Confidence 0 0111222345787887 777676544 888888887665544
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0011 Score=63.61 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=131.3
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----------
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---------- 197 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---------- 197 (394)
+-+-|. |+|.|.||++----| |.+|--++ +..++.+ .|. .|.-+.|||..+||+|-+..-.
T Consensus 212 Tetyv~-wSP~GTYL~t~Hk~G-----I~lWGG~~-f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVR-WSPKGTYLVTFHKQG-----IALWGGES-FDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEE-ecCCceEEEEEeccc-----eeeecCcc-HHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence 455666 999999999776665 77884322 2333333 344 5888999999999999886433
Q ss_pred ---eeecCCCcEEE-ecC--CCCcEE-EEEEcCC--EEEEEecC-----------------CCCCCEEEEEecC--CeEE
Q 016134 198 ---AWNIESSAEFS-LDG--PVGEVY-SMVVANE--MLFAGAQD-----------------GHTRPVTCLAVGR--SRLC 249 (394)
Q Consensus 198 ---vWd~~~~~~~~-~~~--~~~~v~-~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~~--~~l~ 249 (394)
|||+.+|...+ +.. ....+. -..|+.+ +++.-..+ -.-..|....|++ ++||
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 79999998763 221 111122 2345544 22222222 1123444445552 2332
Q ss_pred EEeC-----CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe----------CCCcEEEEEeCCCceeeEee
Q 016134 250 SGSM-----DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS----------LDHTIKVWFATGRGNLEAAY 312 (394)
Q Consensus 250 sgs~-----Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~ 312 (394)
-=.. -..+.+-.+-+++.+++-..|.-.-..+.|. |++|..-- .-..+-|+.++.........
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 2111 1123344444444444433332222223333 55554321 11234455555433222222
Q ss_pred cccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCC----ceeEEEecCCcEEEEEECCCC-EEEE---EeCCC
Q 016134 313 THKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSF----MERGRIFSKHEVRVIEIGPDK-LFFT---GDGAG 382 (394)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~sp~~-~l~t---gs~Dg 382 (394)
... ..+ +...|.|.|..+.+..+. ..++.+|.+++. +++..+. ....+.+.|+|.| .++. +|..|
T Consensus 443 elk--e~v--i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 443 ELK--ESV--IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred ecc--hhe--eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEeccccc
Confidence 222 123 344578998854443333 367899988742 2222222 4568899999999 4333 34578
Q ss_pred eEEEEeCC
Q 016134 383 MLGVWKLL 390 (394)
Q Consensus 383 ~I~vWd~~ 390 (394)
.+.++|++
T Consensus 518 ~l~F~D~~ 525 (698)
T KOG2314|consen 518 DLEFYDTD 525 (698)
T ss_pred ceEEEecc
Confidence 89999876
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0037 Score=60.78 Aligned_cols=188 Identities=9% Similarity=-0.031 Sum_probs=100.8
Q ss_pred eeccccccccc-cCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--e--eecCCC
Q 016134 131 KTTLKNVCCHW-LLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--A--WNIESS 204 (394)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--v--Wd~~~~ 204 (394)
... |+|++.. ++-....+ ....|.++|+.++. ... +....+.+....|+|||+.|+ +.+.++. | +|+.++
T Consensus 192 ~p~-wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~-~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 192 FPK-WANKEQTAFYYTSYGE-RKPTLYKYNLYTGK-KEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEE-ECCCCCcEEEEEEccC-CCCEEEEEECCCCc-EEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 344 9999986 44334432 23479999997763 222 223455667788999998766 4444444 4 466666
Q ss_pred cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134 205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDAPMSL 281 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l 281 (394)
+...+...........|+|| ++.|+-.+ ..+ .|.+.|+.+++..+.... .... .
T Consensus 268 ~~~~LT~~~~~d~~p~~SPD--------------------G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~--~ 324 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVED--------------------DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNN--S 324 (419)
T ss_pred cEEEcccCCCccCccEECCC--------------------CCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcC--c
Confidence 65544333221112233333 34333333 222 677788887765333221 1122 2
Q ss_pred EEc--CCEEEEEeCC---------CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEE
Q 016134 282 LCW--DQFLLSCSLD---------HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYE 348 (394)
Q Consensus 282 ~~~--~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd 348 (394)
.|+ ++.|+..+.. ..|.+.|+..+... .+... .... ...|+|||+.++++....+ .|.+.+
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~----~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQ----FPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcC----CeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 454 7777666543 36788888766543 33222 1111 2347999995444443333 355666
Q ss_pred CCC
Q 016134 349 LPS 351 (394)
Q Consensus 349 ~~~ 351 (394)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 654
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.96 E-value=0.00013 Score=73.62 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=109.5
Q ss_pred EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD 232 (394)
Q Consensus 155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~ 232 (394)
+...|+.+. +..+...-....|+-|+- +++.|.+|...|+| -|..+.+.+. +.+
T Consensus 159 li~~Dl~~~-~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih---------------------t~~ 214 (1118)
T KOG1275|consen 159 LIHIDLNTE-KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH---------------------TFD 214 (1118)
T ss_pred eeeeecccc-eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee---------------------eee
Confidence 445566554 444444333444666654 67899999999984 6666665542 334
Q ss_pred CCCCCEEEEEecCCeEEEEe---------CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEE
Q 016134 233 GHTRPVTCLAVGRSRLCSGS---------MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 233 ~h~~~V~~l~~~~~~l~sgs---------~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vw 300 (394)
.|++.|.++...|++|++++ .|..|+|||++..+.+..+.-+.++ .-+.|. ...+++++..|...+-
T Consensus 215 aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 215 AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 77778887777788888876 3667999999987766665544443 333444 5678888999999999
Q ss_pred EeCCCc-e-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134 301 FATGRG-N-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349 (394)
Q Consensus 301 d~~~~~-~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~ 349 (394)
|..+.. + ......+.....+..+ .+++++. .++.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~f--DiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAF--DISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeE--EecCCCc-eEEEecccCcEeeecC
Confidence 933221 1 2222223322334444 4688898 8999999999999973
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.95 E-value=0.0048 Score=59.67 Aligned_cols=138 Identities=8% Similarity=-0.027 Sum_probs=86.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----------CcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-----------APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT 313 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 313 (394)
++.++.++.++.+..+|..+++.+.+...... ...+....+..++.++.++.+..+|+.+++.+-....
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 34677788899999999999887655431110 0112223467788888899999999998876543321
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CC-cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
.. ...... .+. .|..++.++.|..+|..+++.+-.... .. ...+..+. +++|+.++.||.|.+.|..+
T Consensus 285 ~~--~~~~~~------~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 285 GS--VNDFAV------DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred CC--ccCcEE------ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCC
Confidence 11 111111 233 456677899999999999877554322 11 12222222 45888889999999888765
Q ss_pred C
Q 016134 392 K 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 355 G 355 (394)
T PRK11138 355 G 355 (394)
T ss_pred C
Confidence 4
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.92 E-value=0.0014 Score=58.21 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=29.2
Q ss_pred eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134 326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360 (394)
Q Consensus 326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 360 (394)
..+|||+ +||+...+|.|.+|++++-........
T Consensus 236 SlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 236 SLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EECCCCC-EEEEEEcCCeEEEEecCcchhhcccch
Confidence 4599999 999999999999999999877666554
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.92 E-value=0.00056 Score=61.13 Aligned_cols=255 Identities=12% Similarity=0.132 Sum_probs=150.5
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccC------------CCeEEEEecCCC--CEE
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHE------------KAVSGIALPLRS--DKL 189 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~------------~~V~~l~~s~~~--~~l 189 (394)
.|++|- +..-|.|++++- +.|.|-++.-+.. .+...++++|. ..|..|.|-.++ ..+
T Consensus 28 ~ItaVe-fd~tg~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 28 KITAVE-FDETGLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred eeeEEE-eccccceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 566666 777788888654 4447878765433 34556677774 468889886543 346
Q ss_pred EEEeCCCc--eeecCCCcEEEe----------cCCCCcEEEE------EEcC-CEEEEEec-----CCCCCCEEEEEec-
Q 016134 190 FSGSRDGT--AWNIESSAEFSL----------DGPVGEVYSM------VVAN-EMLFAGAQ-----DGHTRPVTCLAVG- 244 (394)
Q Consensus 190 ~sgs~Dg~--vWd~~~~~~~~~----------~~~~~~v~~l------~~~~-~~l~~~~~-----~~h~~~V~~l~~~- 244 (394)
+..+.|.+ +|.+........ ....+++.+. ..+. +.++++.. ..|.--|.++.++
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 66667777 698865432100 0111222211 1111 13333322 3788889999997
Q ss_pred CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCC-----CCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCcee-----
Q 016134 245 RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHT-----DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNL----- 308 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~-----~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~----- 308 (394)
....+..+.|-.|.+|++.-.. .+..++.|. ..|++..|+ -..+.-.+..|.|++-|+|.....
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 3444445678899999986432 233344443 457788888 355666677899999999843211
Q ss_pred -eEeec-------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEEEec-------------CCcE--
Q 016134 309 -EAAYT-------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGRIFS-------------KHEV-- 364 (394)
Q Consensus 309 -~~~~~-------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-------------~~~v-- 364 (394)
..... ..+....+ -.+.|+++|+ ++++-. --+|+|||++..+ ++.++.. ...|
T Consensus 263 lfe~~~D~v~~~ff~eivsSI-SD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSI-SDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhccCcccchhHHHHhhhh-cceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 10000 00001111 1245789998 777554 4689999998653 4444421 1222
Q ss_pred -EEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 365 -RVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 365 -~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
..+.|+.|. .+++|+..+..-++-..
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecCCcccccccccccceeeeccc
Confidence 346777777 88899988887777643
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.88 E-value=0.01 Score=54.20 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=121.2
Q ss_pred eEEEEEcCCCceEEEEecccCCCeE--EEEecCCCCEEEEEeCCCc-------eeecC-CCcEE-EecCCCCcEEEEEEc
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVS--GIALPLRSDKLFSGSRDGT-------AWNIE-SSAEF-SLDGPVGEVYSMVVA 222 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~--~l~~s~~~~~l~sgs~Dg~-------vWd~~-~~~~~-~~~~~~~~v~~l~~~ 222 (394)
+..+||..++ +..+.+....+.-. --.|++||++|++.-.|-. |||.. +.+.+ .+..+.-.-..+.+.
T Consensus 29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 6677888776 44445443332221 2579999999999877654 79998 33333 444444444456666
Q ss_pred CC--EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEE--E--cCCCCCcEEEEEcC-CEEEEEe-CC
Q 016134 223 NE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMT--L--NDHTDAPMSLLCWD-QFLLSCS-LD 294 (394)
Q Consensus 223 ~~--~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~--~--~~h~~~v~~l~~~~-~~l~s~s-~D 294 (394)
++ .|+++...-++.+= .....|-...++-++...|..+++.+.+ + ..|.-.|..+++.+ ..++.+. ..
T Consensus 108 pDG~tLvVANGGI~Thpd----~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPD----SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred CCCCEEEEEcCCCccCcc----cCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 66 45554332111110 0012344456667777778888887665 3 23666777777762 2222222 11
Q ss_pred C-------cEEEEEeCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE
Q 016134 295 H-------TIKVWFATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV 364 (394)
Q Consensus 295 g-------~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v 364 (394)
+ -|-+++ .++.+..+..... ...-+.-++++++++..+.+|+-.-+.+.+||..+++.+..... ..+
T Consensus 184 g~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~ 260 (305)
T PF07433_consen 184 GDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDA 260 (305)
T ss_pred CCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-Cce
Confidence 1 122222 2222222211110 01111223345888885667777789999999999988766543 457
Q ss_pred EEEEECCCCEEEEEeC
Q 016134 365 RVIEIGPDKLFFTGDG 380 (394)
Q Consensus 365 ~~l~~sp~~~l~tgs~ 380 (394)
..++..+++++++.+.
T Consensus 261 cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 261 CGVAPTDDGFLVSSGQ 276 (305)
T ss_pred eeeeecCCceEEeCCC
Confidence 7777777775555544
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.015 Score=51.17 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=61.1
Q ss_pred cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134 85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL 164 (394)
Q Consensus 85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~ 164 (394)
+.+.-||--+.+.-=|..+++.. |..--...+.+.+ -.++.++.-+|++| .+++.+.+++
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~-------------We~ilg~RiE~sa--~vvgdfVV~GCy~g----~lYfl~~~tG- 83 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI-------------WEAILGVRIECSA--IVVGDFVVLGCYSG----GLYFLCVKTG- 83 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE-------------eehhhCceeeeee--EEECCEEEEEEccC----cEEEEEecch-
Confidence 34455565555555555555542 4442222344333 23788899999999 7999999888
Q ss_pred eEEEEecccCCCeEE-EEecCCCCEEEEEeCCCce--eecCCCcEE
Q 016134 165 TMLAKLEGHEKAVSG-IALPLRSDKLFSGSRDGTA--WNIESSAEF 207 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~-l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~ 207 (394)
..+..+..- +.|.+ -...+++.++..++.|+.+ -|..+..++
T Consensus 84 s~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 84 SQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred hheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 444444332 22222 3346789999999999994 344444433
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=9.4e-06 Score=81.22 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=117.6
Q ss_pred ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL 241 (394)
Q Consensus 164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l 241 (394)
++..+++..|+...+|++|+-+.++|+.|+..|. ++++.+|.... +.++|..+|+-+
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------SVNCHQSAVTLV 1149 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---------------------cccccccccccc
Confidence 5667888899999999999999999999999998 58888887642 223677777766
Q ss_pred Eec--CCeEEE-EeCCC-eEEEEeCCC-CceeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134 242 AVG--RSRLCS-GSMDN-TIRVWELDT-LEPVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGNLEAAYTH 314 (394)
Q Consensus 242 ~~~--~~~l~s-gs~Dg-~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 314 (394)
.-+ +..+++ ++... ...+|++.+ +...++|.. -.++.|++ +.-+.|.......+||+.+..++.++...
T Consensus 1150 ePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1150 EPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred cccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc
Confidence 654 544333 33333 577898864 455555543 34666762 22233333356789999888777664432
Q ss_pred cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
......-.-...|+|+.. +++ .|| .+||++..+.+..+..-.---.-.|+|.| .++.-++ |||+.
T Consensus 1226 ~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred chhhhhhccccccCCCcc-eEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhH
Confidence 221111112334788887 554 355 46888877555544331111122478887 5555443 56654
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00037 Score=69.53 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=118.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeC
Q 016134 174 EKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM 253 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~ 253 (394)
...++|++++ +++|+-|..+|.|.-..-.... ...+ .|... .-.|.++++||.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------------~~~~-----~~s~~----~~~Gey~asCS~ 91 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------------KTNF-----DHSSS----ILEGEYVASCSD 91 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc----------------cccc-----ccccc----ccCCceEEEecC
Confidence 4567777775 5677777777765433322221 0000 12221 234899999999
Q ss_pred CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134 254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL 326 (394)
Q Consensus 254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
||+|.|-.+-+.+...++. ...++.+++++ .+.+++|+..| +.++.-+--+.......+.....+.++.
T Consensus 92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~-- 167 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK-- 167 (846)
T ss_pred CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE--
Confidence 9999999998877766654 44688888887 35789999888 7777543222222233344445555553
Q ss_pred ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-------cEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-------EVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
| .|. ++|=++++| |+|||+.+.+.+..+.-.+ -...+.|.++..|+.|=.| +|+|..++
T Consensus 168 W--~g~-lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 168 W--RGN-LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred e--cCc-EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 3 455 788777665 9999999988877765422 2456788888888887665 58887776
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.78 E-value=0.00024 Score=68.77 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=55.3
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+.+++|+.+ .|+.|+.||+|.+||...+..... ...-.++.++|+|+| .+++|+.-|.+.+||+.-.
T Consensus 262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 262 VICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34456799988 888899999999999987633322 334568899999999 9999999999999997543
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.74 E-value=0.005 Score=56.14 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=98.3
Q ss_pred cccccccccCCCeec-CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-------Cc--------
Q 016134 134 LKNVCCHWLLGNCVR-GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-------GT-------- 197 (394)
Q Consensus 134 ~~~~~~~~~~~~~~~-g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~-------- 197 (394)
+|++++.+|.+.-.+ ....|.|-|||...+++.+.++..|--.-..|.+.||++.|+.+-.- |.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 399999998665433 35577999999998889999999998888889999999877766421 11
Q ss_pred -----eeecCCCcEEE---e--cCCCCcEEEEEEcCC-EEEEEecC-------------------------------CCC
Q 016134 198 -----AWNIESSAEFS---L--DGPVGEVYSMVVANE-MLFAGAQD-------------------------------GHT 235 (394)
Q Consensus 198 -----vWd~~~~~~~~---~--~~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~ 235 (394)
+-|..+++.+. + ..+...+..|++..+ .++.+... .-.
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~ 216 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLN 216 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhC
Confidence 24566777652 3 335567888888777 44444332 123
Q ss_pred CCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEE
Q 016134 236 RPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSC 291 (394)
Q Consensus 236 ~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~ 291 (394)
..|-+|+++ +.++ +|+=.-+.+.+||..+++.+..... ..+..++.. +.++++.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ss 274 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSS 274 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeC
Confidence 455566665 3333 4444556667777776666554432 234444444 3334443
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0005 Score=64.34 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=122.4
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeE
Q 016134 173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRL 248 (394)
Q Consensus 173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l 248 (394)
|.+.|+.+.-. -.+++.+++.||.+ |.-..-.-+.+.. ....|...|.+++.+ +-++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK------------------hFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK------------------HFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh------------------hhHHHHHHHHhhhccccceeE
Confidence 77777776553 46799999999984 6543212221111 111455566655554 6678
Q ss_pred EEEeC-CCeEEEEeCCCCceeEEEc--CCCCCcEEEEEcCC---EEEE-EeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 249 CSGSM-DNTIRVWELDTLEPVMTLN--DHTDAPMSLLCWDQ---FLLS-CSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 249 ~sgs~-Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~---~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
.|.+. |..++++|+++...+.-++ -..+.+..+...|. .|+. .-.++.+.++|-....+.........-..+.
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK 148 (558)
T ss_pred eeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence 88777 9999999998765543332 22233322222231 3333 3357899999977655433332222222233
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCC------CceeEEEe----------cCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS------FMERGRIF----------SKHEVRVIEIGPDK-LFFTGDGAGML 384 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~------~~~~~~~~----------~~~~v~~l~~sp~~-~l~tgs~Dg~I 384 (394)
.+ .+.+-+. .+++....|.|.-|.... .+....+. .+....++.|+|++ .+.+-+.|..|
T Consensus 149 ~i--~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 149 KI--RYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred EE--Eeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence 22 3467777 778888889999998872 11111111 14568999999999 99999999999
Q ss_pred EEEeCCCC
Q 016134 385 GVWKLLAK 392 (394)
Q Consensus 385 ~vWd~~~~ 392 (394)
+++++.++
T Consensus 226 R~F~~KtG 233 (558)
T KOG0882|consen 226 RGFVFKTG 233 (558)
T ss_pred EEEEeccc
Confidence 99998765
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=2.8e-05 Score=77.93 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=133.3
Q ss_pred CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----ee
Q 016134 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AW 199 (394)
Q Consensus 124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vW 199 (394)
.+...-++.+ |+....+++.+...| -|+++++.++ .......+|..+|+-+.=+.+|..+++.+.-.. +|
T Consensus 1099 d~~~~fTc~a-fs~~~~hL~vG~~~G----eik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1099 DETALFTCIA-FSGGTNHLAVGSHAG----EIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccccceeeEE-eecCCceEEeeeccc----eEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3344556666 888888888888888 8999999988 566777899999999999999998887776555 79
Q ss_pred ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCC-CCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEE-cC--
Q 016134 200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHT-RPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTL-ND-- 273 (394)
Q Consensus 200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~-~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~-- 273 (394)
++.+--.. .|+ ..-.++.|+. ..-+.|..-..+.|||++++.++.++ .+
T Consensus 1173 ~~~s~~~~-------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1173 DASSTGGP-------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred ccccccCc-------------------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch
Confidence 98652111 111 2334556653 22344444467899999998877663 22
Q ss_pred -CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 274 -HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 274 -h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
.+..-....|+ ..+++ .|| .+||++..+.+..+.... ......|+|.|..+++ - -.|||++
T Consensus 1228 ~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----~~~~G~FHP~g~eVII-N-----SEIwD~R 1291 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----DYGGGGFHPSGNEVII-N-----SEIWDMR 1291 (1516)
T ss_pred hhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----ecccccccCCCceEEe-e-----chhhhhH
Confidence 11222445555 33443 355 479999877666655433 3334558999985444 2 3689999
Q ss_pred CCceeEEEecCCcEEEEEECCCC
Q 016134 351 SFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 351 ~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
+++.+..++.-. -..+.|+..|
T Consensus 1292 TF~lLh~VP~Ld-qc~VtFNstG 1313 (1516)
T KOG1832|consen 1292 TFKLLHSVPSLD-QCAVTFNSTG 1313 (1516)
T ss_pred HHHHHhcCcccc-ceEEEeccCc
Confidence 998877765422 2345666666
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.65 E-value=0.021 Score=51.19 Aligned_cols=147 Identities=15% Similarity=-0.035 Sum_probs=91.4
Q ss_pred EEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134 240 CLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH 314 (394)
Q Consensus 240 ~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 314 (394)
++.|+ +.++++--..+.|..||..+++... +.... ...+.+. +..|+.+..++ +.++|+.+++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 34565 3456666678999999998766533 33222 5666666 56777776654 556698776443333322
Q ss_pred cCC-cceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCe
Q 016134 315 KED-NGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGM 383 (394)
Q Consensus 315 ~~~-~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~ 383 (394)
... .....-.+.++++|. +.++.... +.|..++.. ++.......-...+.|+|+|++ ++++-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 121 233333456799998 67765543 557777777 5544444445678999999999 4557778888
Q ss_pred EEEEeCCCC
Q 016134 384 LGVWKLLAK 392 (394)
Q Consensus 384 I~vWd~~~~ 392 (394)
|..+++..+
T Consensus 158 i~~~~~~~~ 166 (246)
T PF08450_consen 158 IWRFDLDAD 166 (246)
T ss_dssp EEEEEEETT
T ss_pred eEEEecccc
Confidence 988888643
No 318
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0056 Score=46.92 Aligned_cols=93 Identities=27% Similarity=0.262 Sum_probs=63.9
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEE
Q 016134 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG 324 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 324 (394)
+.|++|+.|..||||+-. +.+.++.. .+.|+++... +..|+.+-.+|+|-+|+-.. .+-... ....+.++.
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK---SK~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK---SKNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec---cCCCeEEEE
Confidence 679999999999999754 67777764 4677888776 78899999999999997522 111222 222233332
Q ss_pred e-eECCCCCcEEEEEeCCCeEEE
Q 016134 325 G-LNDPDGKPVLICACNDNTVHL 346 (394)
Q Consensus 325 ~-~~s~~g~~~l~sgs~dg~I~i 346 (394)
. ..+.+|..-|++|-.+|.|-+
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEEe
Confidence 1 234456667899988988753
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.0023 Score=63.90 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=108.1
Q ss_pred EEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--------------CCEEEEEeCCCcEEEEEe
Q 016134 238 VTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--------------DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 238 V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--------------~~~l~s~s~Dg~i~vwd~ 302 (394)
-.++.|+ +.+|+-|+. ..|.+-|.++.+.++.++.|...|+.+.|. .-+|+++...|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 4566777 567777764 679999999999999999999999999986 125777778899999999
Q ss_pred CCCceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE-EEEEECCCC--EEEEE
Q 016134 303 TGRGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV-RVIEIGPDK--LFFTG 378 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v-~~l~~sp~~--~l~tg 378 (394)
.....+..+..+......+ ++.+.. +.+.+|++-....+|.+|+..+|+..-.....+.+ .|+.+.|-. .+..-
T Consensus 97 ~~~s~~~~l~~~~~~~qdl--~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDL--CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred hhhhhhhhhcCCCcchhhe--eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 8877666666655554433 444443 34357777777899999999999988777665554 558888854 44444
Q ss_pred eCCCeEEEEe
Q 016134 379 DGAGMLGVWK 388 (394)
Q Consensus 379 s~Dg~I~vWd 388 (394)
+..|.|.+-+
T Consensus 175 ~s~g~vl~~~ 184 (1062)
T KOG1912|consen 175 GSKGFVLSCK 184 (1062)
T ss_pred ccCceEEEEe
Confidence 4555555544
No 320
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.0024 Score=65.68 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=89.5
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEEEEc-------CCEEEEEeCCCcEEEEEeCCCce-eeEeeccc--C
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLLCW-------DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHK--E 316 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~--~ 316 (394)
|........|+-.|++.|+.+..++.|... |..++.. +...+.|-.++.|..||.|.... +.....+. .
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 333445688999999999999999887654 6777654 33456677788999999986532 21111111 1
Q ss_pred CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
...-.+ ++-+.+| .||+|+.+|.||+||--.......++. ..+|..|..+.|| +|++.+ +..|.+++..
T Consensus 577 ~~~Fs~--~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 577 KNNFSC--FATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCceE--EEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 111122 2235555 699999999999999543232333434 7899999999999 443333 4567777653
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.009 Score=45.78 Aligned_cols=98 Identities=22% Similarity=0.198 Sum_probs=64.7
Q ss_pred cEEEEEc------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 278 PMSLLCW------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 278 v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
|++|++. .+.|++|+.|..||+|+- .+.+..+... ..+..++ .... . .++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~--~~~~-~-~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLC--SLGG-G-RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEE--EcCC-C-EEEEEecCCEEEEEeCcc
Confidence 5566654 268999999999999974 3444444333 2333332 1222 3 688899999999997643
Q ss_pred CceeEEEecCCcEEEEEECC---CC--EEEEEeCCCeEEE
Q 016134 352 FMERGRIFSKHEVRVIEIGP---DK--LFFTGDGAGMLGV 386 (394)
Q Consensus 352 ~~~~~~~~~~~~v~~l~~sp---~~--~l~tgs~Dg~I~v 386 (394)
.+-.+..++.++++++.. || .|++|-.+|.|-+
T Consensus 73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444455566677776543 44 8999999998753
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.46 E-value=0.088 Score=50.64 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=115.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE----------------ecCCCCcEEEEEE--cCC----EEEEEec
Q 016134 176 AVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS----------------LDGPVGEVYSMVV--ANE----MLFAGAQ 231 (394)
Q Consensus 176 ~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~----------------~~~~~~~v~~l~~--~~~----~l~~~~~ 231 (394)
.|+.+.|.++..-|+.+...|. ||.+...+... .....+.+..+.- .+. ++-..-.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999889999999998 45544332221 0011233333321 011 2222223
Q ss_pred CCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE--cC------CCCCcEEEEEc-----C-----CEEEEEe
Q 016134 232 DGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL--ND------HTDAPMSLLCW-----D-----QFLLSCS 292 (394)
Q Consensus 232 ~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~------h~~~v~~l~~~-----~-----~~l~s~s 292 (394)
+...++|++++.+ =.+++.|..+|.+.|.|+|....+..- .. ....|+++.|. + -.|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 3458899999997 579999999999999999887766552 12 23467888886 1 3788889
Q ss_pred CCCcEEEEEeCC-C-c-eeeEeecc--cCCcceEEEEeeECCCC-------------------CcEEEEEeCCCeEEEEE
Q 016134 293 LDHTIKVWFATG-R-G-NLEAAYTH--KEDNGVLALGGLNDPDG-------------------KPVLICACNDNTVHLYE 348 (394)
Q Consensus 293 ~Dg~i~vwd~~~-~-~-~~~~~~~~--~~~~~~~~~~~~~s~~g-------------------~~~l~sgs~dg~I~iwd 348 (394)
..|.+.+|.+.- . . -...+... .....+..+.......| ..+++. ..+..++|+.
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~ 241 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFK 241 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEe
Confidence 999999998751 1 1 11111111 11222333222111111 113443 3467899999
Q ss_pred CCCCceeEEEecCC-cEEEEEEC-----CCC-EEEEEeCCCeEEEEeCCC
Q 016134 349 LPSFMERGRIFSKH-EVRVIEIG-----PDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 349 ~~~~~~~~~~~~~~-~v~~l~~s-----p~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
..+.+...+..... ....+.+- ..+ .|++-..+|.|+++.+..
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 99887776666321 23334442 234 888888999999998753
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0077 Score=59.70 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134 83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE 162 (394)
Q Consensus 83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~ 162 (394)
....|+-|+.-+.+.++|+.++.....++ +| ..+.+.... .++...++|.++.+| .|-++.+..
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~--------~~---~~~~~~~~~-vs~~e~lvAagt~~g----~V~v~ql~~ 107 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKN--------EG---ATGITCVRS-VSSVEYLVAAGTASG----RVSVFQLNK 107 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccc--------cC---ccceEEEEE-ecchhHhhhhhcCCc----eEEeehhhc
Confidence 55578889999999999999988665443 23 222233333 778888888888888 788887754
Q ss_pred CceEEEEe-----cccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134 163 GLTMLAKL-----EGHEKAVSGIALPLRSDKLFSGSRDGT 197 (394)
Q Consensus 163 ~~~~~~~l-----~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 197 (394)
+...-..+ +.|...|++++|++++..|++|...|+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 32211111 337789999999999999999999998
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.40 E-value=0.021 Score=55.70 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134 233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR 305 (394)
Q Consensus 233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~ 305 (394)
.....|.+.+++ .+.|+.|+.||+|.+||...+... +....-.++.++|+ |.++++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 566788888887 678999999999999998765332 22344567888998 779999999999999998643
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0057 Score=61.88 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=96.9
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEEEEcC--CEEEEEeCCCc-----EEEEEeCCC---
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLLCWD--QFLLSCSLDHT-----IKVWFATGR--- 305 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~--~~l~s~s~Dg~-----i~vwd~~~~--- 305 (394)
.|.|+.-++..++.|+.||.|.+++- ..+.++.|+++... |..+.... .+|++.++|.. |++||+..-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 67777767889999999999988874 35666888887776 44443333 48888887764 999998642
Q ss_pred ---ceee--EeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC---CCceeE--EEecCCcEEEEEECCCC-
Q 016134 306 ---GNLE--AAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELP---SFMERG--RIFSKHEVRVIEIGPDK- 373 (394)
Q Consensus 306 ---~~~~--~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~---~~~~~~--~~~~~~~v~~l~~sp~~- 373 (394)
.++. .+..+..+ .....-..+.+.+-+ .+|+|-.+|.|..+.-. ...... ......+|+.+++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 2221 22222222 111111122355555 89999999999998532 111222 22337789999999998
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 016134 374 LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 374 ~l~tgs~Dg~I~vWd~~~~ 392 (394)
.++-...-..|.+|.+..+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred eeEEEEecceeEEEEecCC
Confidence 3233333456888887643
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.39 E-value=0.092 Score=52.32 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=73.8
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEE------------------eCCCcEEEEEeCCCcee
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC------------------SLDHTIKVWFATGRGNL 308 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~------------------s~Dg~i~vwd~~~~~~~ 308 (394)
.++.++.+|.+...|.++++.+...+.... .+......++.. ..++.|.-.|+.+++.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 578888999999999999998876542100 111122222221 23577888888887665
Q ss_pred eEeecccC--------Cc--ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEECCCC--E
Q 016134 309 EAAYTHKE--------DN--GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGPDK--L 374 (394)
Q Consensus 309 ~~~~~~~~--------~~--~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~sp~~--~ 374 (394)
-....... .. ....+ .+. +|+.++.||.|+.+|..+++++-+......+.+ +.+..++ +
T Consensus 380 W~~~~~~~~~~~~~g~~~~~~~~~~------~g~-~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 380 WEKREGTIRDSWNIGFPHWGGSLAT------AGN-LVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQY 452 (488)
T ss_pred eEeeCCccccccccCCcccCcceEe------cCC-eEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence 44432210 00 11111 334 677788999999999999999888766444332 2234466 4
Q ss_pred EEEE
Q 016134 375 FFTG 378 (394)
Q Consensus 375 l~tg 378 (394)
+++.
T Consensus 453 v~~~ 456 (488)
T cd00216 453 VGVM 456 (488)
T ss_pred EEEE
Confidence 4443
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.35 E-value=0.061 Score=56.78 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=76.8
Q ss_pred EEEec--CCeEEE-----EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe---CCCcEEEEEeCCCce
Q 016134 240 CLAVG--RSRLCS-----GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS---LDHTIKVWFATGRGN 307 (394)
Q Consensus 240 ~l~~~--~~~l~s-----gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s---~Dg~i~vwd~~~~~~ 307 (394)
.|.|- ++++++ ...-..|+|||.+ +.+-.+-+...+.-.+++|- |..+++-. .|+.|.+|.-+ +..
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~ 277 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLR 277 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccc
Confidence 46775 667776 2233899999977 44322222222223455554 67777653 35678888743 222
Q ss_pred eeEeec--ccCCcceEEEEeeECCCCCcEEEE---EeCCCeEEEEECCCCce--eEEEecCCcEEEEEECCCC--EEEEE
Q 016134 308 LEAAYT--HKEDNGVLALGGLNDPDGKPVLIC---ACNDNTVHLYELPSFME--RGRIFSKHEVRVIEIGPDK--LFFTG 378 (394)
Q Consensus 308 ~~~~~~--~~~~~~~~~~~~~~s~~g~~~l~s---gs~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~sp~~--~l~tg 378 (394)
-..+.. ......+. ...|+.++. +|++ ......|++|-+.+..- ...+.-..... +.|+|-. .|..-
T Consensus 278 hg~f~l~~p~de~~ve--~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~ 353 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVE--ELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVL 353 (1265)
T ss_pred ccccccCCcccccchh--eeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEE
Confidence 111111 11111122 334688888 7776 44455599999887632 22222222222 7888865 44444
Q ss_pred eCCCeEEEEeC
Q 016134 379 DGAGMLGVWKL 389 (394)
Q Consensus 379 s~Dg~I~vWd~ 389 (394)
..+|...++++
T Consensus 354 ~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 354 RESGQRLVRDF 364 (1265)
T ss_pred ecCCcEEEEEE
Confidence 46776666554
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.029 Score=49.40 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=94.3
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL 323 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 323 (394)
..+++.|+..+.+.--|..+++.+.+-. -...|.+-+.- +++++.|+..+.+.+.+..++.....+..... +.+.+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh-hccceE
Confidence 4678889999999999999988765432 22344433333 89999999999999999999877766655433 444444
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEE-EEEECC-CCEEEEEeCCCeE
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVR-VIEIGP-DKLFFTGDGAGML 384 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~-~l~~sp-~~~l~tgs~Dg~I 384 (394)
.++++. ++.+|+.|++.+..|.++...+.+....+.+. +-++.| ++.|+.+...|.|
T Consensus 101 ---~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 101 ---CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ---EcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 278888 99999999999999999988887766544432 334445 3434444444444
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.28 E-value=0.16 Score=47.55 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=91.2
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc-eeEEE-cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCC-ceee
Q 016134 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE-PVMTL-NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGR-GNLE 309 (394)
Q Consensus 233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~-~~~~ 309 (394)
...++|++++--+++|+.+. .+.|.+|++...+ .+..- ......+.++...+++++.+.....+.++..... ..+.
T Consensus 86 ~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 86 EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Confidence 34677888876666655544 5899999998776 33322 2233477888888999999999899998866543 2233
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-------Cc----eeEEEecCCcEEEE---EECCC--C
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-------FM----ERGRIFSKHEVRVI---EIGPD--K 373 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-------~~----~~~~~~~~~~v~~l---~~sp~--~ 373 (394)
.+.....+..+.+. .+-++++ .++++..+|.|.++.... +. ....+.....|+++ .+.|. +
T Consensus 165 ~va~d~~~~~v~~~--~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~ 241 (321)
T PF03178_consen 165 LVARDYQPRWVTAA--EFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGS 241 (321)
T ss_dssp EEEEESS-BEEEEE--EEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSS
T ss_pred EEEecCCCccEEEE--EEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCC
Confidence 33333333333433 3444555 788899999999998763 12 22333337778888 55552 2
Q ss_pred -------EEEEEeCCCeEEE
Q 016134 374 -------LFFTGDGAGMLGV 386 (394)
Q Consensus 374 -------~l~tgs~Dg~I~v 386 (394)
.++.++.+|.|-+
T Consensus 242 ~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 242 SESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S-TTEEEEEEEEETTS-EEE
T ss_pred CcccccceEEEEecCCEEEE
Confidence 3888889998873
No 330
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.25 E-value=0.021 Score=54.61 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=115.0
Q ss_pred EEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecCC
Q 016134 157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG 233 (394)
Q Consensus 157 iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~ 233 (394)
.|...+. ..-..+..-.-++..++|||.|.+|++....+. +|.-.....+... ....|+.+.|+|. +|.+=....
T Consensus 16 f~~~~s~-~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~~~V~~~~fSP~~kYL~tw~~~p 93 (561)
T COG5354 16 FWNSQSE-VIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RHPDVKYLDFSPNEKYLVTWSREP 93 (561)
T ss_pred eecCccc-cccccccccCcchhheeecCcchheehhhccceEEccccchhheeee-ecCCceecccCcccceeeeeccCC
Confidence 3444333 333444446778999999999999999998887 7888776643222 2346778888887 333322221
Q ss_pred CCCCEEEEEecC-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--cE-EEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134 234 HTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA--PM-SLLCW--DQFLLSCSLDHTIKVWFATGRGN 307 (394)
Q Consensus 234 h~~~V~~l~~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~--v~-~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~ 307 (394)
. . ++ ..+.=-..+..+.+||+.++..+..+.....+ .+ -+.|+ +.++|-. ....+.|+++...-.
T Consensus 94 i----~----~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~ 164 (561)
T COG5354 94 I----I----EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE 164 (561)
T ss_pred c----c----ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence 1 0 10 00111123447999999999999998876554 33 34444 5554443 345789999732111
Q ss_pred eeEeecccCCcceEEEEeeECCCCCc-EEEE-----EeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKP-VLIC-----ACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK 373 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~-~l~s-----gs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~ 373 (394)
...+.... ...+..+ .++|.+.. .|+. .+.+++++||.+.....+.+..- .-.=..+.|.+.|
T Consensus 165 ~~p~~~lr-~~gi~dF--sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 165 EHPFKNLR-PVGILDF--SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred cCchhhcc-ccceeeE--EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence 11111111 1233333 24555321 2332 46688999999997765544322 2222356788877
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0025 Score=59.03 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc
Q 016134 233 GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG 306 (394)
Q Consensus 233 ~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~ 306 (394)
+|...|.+++|+ ..++..++.+.+|+|.|+++..++..+..+ ..+++++|+ ..+|..|-..|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 677889999997 357899999999999999999999988877 889999998 5688888899999999999765
Q ss_pred ee
Q 016134 307 NL 308 (394)
Q Consensus 307 ~~ 308 (394)
..
T Consensus 270 ~~ 271 (463)
T KOG1645|consen 270 GP 271 (463)
T ss_pred ch
Confidence 43
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.20 E-value=0.1 Score=52.30 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=72.3
Q ss_pred CCEEEEEeCCCcEEEEEeCC-----CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-----
Q 016134 285 DQFLLSCSLDHTIKVWFATG-----RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME----- 354 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~----- 354 (394)
|++... .+++|.+.|.++ .+.+..+.....+.. +. ++|||+++++++..+.+|.|+|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG-V~----vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHG-VN----TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccc-eE----ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 555444 367899999987 344555554444433 22 4999998888888899999999998653
Q ss_pred -------eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 355 -------RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 355 -------~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
..+..........+|.++| .+.|-.-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333334456678899998 777788899999999875
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.16 E-value=0.023 Score=53.27 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=85.2
Q ss_pred CeEEEEeCCCC-----c--eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE
Q 016134 255 NTIRVWELDTL-----E--PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN 327 (394)
Q Consensus 255 g~V~iwd~~~~-----~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (394)
|.|.++++... + .+... ...++|++++..+..|+.+. .+.|.+|++...+.+...........+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--- 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--- 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE---
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe---
Confidence 88999998873 2 22222 35788999998866655554 5899999998877344443444444555553
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEe---cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 328 DPDGKPVLICACNDNTVHLYELPSF-MERGRIF---SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 328 s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~---~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
..+. +++.|..-..|.++..... ..+..+. ....++++.+-+++ .++.+..+|.|.++....
T Consensus 137 -~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 137 -VFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -EETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred -cccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 2244 7888888888888865542 2222222 25568999998776 999999999999998864
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.13 E-value=0.055 Score=52.02 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT 239 (394)
Q Consensus 162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~ 239 (394)
.++.+...++..+++|++++.+ |=-+++.|..+|. |-|++....+....... .+ ........|+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-----~~--------~~~~~~~~vt 139 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-----SF--------LSKSSSSYVT 139 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------T-SS----EE
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-----cc--------cccccccCee
Confidence 3567888888889999999997 5569999999998 68997766552111000 00 0002234455
Q ss_pred EEEec-----C-----CeEEEEeCCCeEEEEeCC--C-Cc----eeEEEcCCCCCcEEEEEc------------------
Q 016134 240 CLAVG-----R-----SRLCSGSMDNTIRVWELD--T-LE----PVMTLNDHTDAPMSLLCW------------------ 284 (394)
Q Consensus 240 ~l~~~-----~-----~~l~sgs~Dg~V~iwd~~--~-~~----~~~~~~~h~~~v~~l~~~------------------ 284 (394)
++.|. + -.+++|...|.+.+|.+- . +. .......+.++|..+...
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 56653 1 258889999999999774 1 11 112222456676666532
Q ss_pred ------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE--CCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134 285 ------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN--DPDGKPVLICACNDNTVHLYELPSFMERG 356 (394)
Q Consensus 285 ------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~~l~sgs~dg~I~iwd~~~~~~~~ 356 (394)
..+++. ..+..+|++...+.+...+.. .....+....+.. +..+...|++-..+|.|++|.++..+++.
T Consensus 220 ~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 220 SKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp GGT----EEEEE-E-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred ccCCCcCcEEEE-EcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 024444 446789999988766655444 2212222222110 11233378888999999999999998887
Q ss_pred EEecC-----CcEEEEEECCCC
Q 016134 357 RIFSK-----HEVRVIEIGPDK 373 (394)
Q Consensus 357 ~~~~~-----~~v~~l~~sp~~ 373 (394)
.+... ..+....++++|
T Consensus 297 ~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 297 SVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp EEE-SS---HHHHTT-EE-TTS
T ss_pred cccCCCccccccccccEECCCC
Confidence 76652 124556678888
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.13 E-value=0.25 Score=49.25 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=83.8
Q ss_pred CCeEEEEeCCC------------------eEEEEeCCCCceeEEEcCCCCCc-----------EEEE-EcCC---EEEEE
Q 016134 245 RSRLCSGSMDN------------------TIRVWELDTLEPVMTLNDHTDAP-----------MSLL-CWDQ---FLLSC 291 (394)
Q Consensus 245 ~~~l~sgs~Dg------------------~V~iwd~~~~~~~~~~~~h~~~v-----------~~l~-~~~~---~l~s~ 291 (394)
+++++.++.++ .|.-+|+++++.+-.++.-.... ..+. ..+. .++.+
T Consensus 228 ~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g 307 (488)
T cd00216 228 TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA 307 (488)
T ss_pred CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE
Confidence 45677777665 78999999999887764211111 1111 1232 57778
Q ss_pred eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-----------------EeCCCeEEEEECCCCce
Q 016134 292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-----------------ACNDNTVHLYELPSFME 354 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-----------------gs~dg~I~iwd~~~~~~ 354 (394)
+.+|.+...|.++++.+-....... ... .+| +. +++. ...++.|.-.|+.+++.
T Consensus 308 ~~~G~l~ald~~tG~~~W~~~~~~~---~~~----~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 308 PKNGFFYVLDRTTGKLISARPEVEQ---PMA----YDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred CCCceEEEEECCCCcEeeEeEeecc---ccc----cCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 8899999999999887655432210 011 123 22 2221 12367888889988887
Q ss_pred eEEEecC---------CcE--EEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134 355 RGRIFSK---------HEV--RVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 355 ~~~~~~~---------~~v--~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~ 393 (394)
+-+.... ... ..+... .+.|+.++.||.|+.+|..+..
T Consensus 379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 379 VWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred eeEeeCCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCc
Confidence 7665443 111 112222 2488888999999999987653
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.21 Score=51.00 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=116.5
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCC-eEEEEecCCCCEEEEEeCCCc-------eeecCCCcE
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKA-VSGIALPLRSDKLFSGSRDGT-------AWNIESSAE 206 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~ 206 (394)
+++.+.-++-+..+| +||-++..++.++.++.+... |..+-...+..+|++.+.|+. ||+++.-+.
T Consensus 31 ~~s~~~~vvigt~~G------~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADG------RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EcCCCceEEEeeccc------cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 444444555555555 567777787888999999888 555555555579999999887 698864321
Q ss_pred EEecCCCCcEE-EEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC----CCceeEEEcCCCCCcE
Q 016134 207 FSLDGPVGEVY-SMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD----TLEPVMTLNDHTDAPM 279 (394)
Q Consensus 207 ~~~~~~~~~v~-~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~----~~~~~~~~~~h~~~v~ 279 (394)
-. ..... .... +.--......++.+++.+ -..+|+|-.+|.|..+.-+ .+....-...-..+|+
T Consensus 105 n~----sP~c~~~~ri-----~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 105 NN----SPQCLYEHRI-----FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred CC----Ccceeeeeee-----eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 00 00000 0000 000000234566777776 3568899999999998532 1222222233467899
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE
Q 016134 280 SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357 (394)
Q Consensus 280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~ 357 (394)
.+.+. +..++.+..-..|.+|.+....+......+. ..... |+.+++ +.+-+++++ +.-|.+|+.........
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~ln--Css~~~-~t~qfIca~-~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLN--CSSFSD-GTYQFICAG-SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-Cccce--eeecCC-CCccEEEec-CceEEEEcCCCcceeee
Confidence 99998 4442333344679999998544222222221 12222 333443 332355444 45799999987666555
Q ss_pred Ee
Q 016134 358 IF 359 (394)
Q Consensus 358 ~~ 359 (394)
+.
T Consensus 251 f~ 252 (933)
T KOG2114|consen 251 FE 252 (933)
T ss_pred ec
Confidence 55
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.0049 Score=61.00 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=75.6
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134 279 MSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI 358 (394)
Q Consensus 279 ~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~ 358 (394)
++++..+++++.|+.-|.+.+|+-..++......... ..+.+ ..+.+++.. ++|.|+..|.|.++-+.........
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~--~~~~~-~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA--TGITC-VRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCc--cceEE-EEEecchhH-hhhhhcCCceEEeehhhccCCCcce
Confidence 4555558999999999999999866544333222221 22222 122466666 8899999999999988764222111
Q ss_pred -----e--cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 359 -----F--SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 359 -----~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
. ++..|++++|++++ .+++|...|+|.+-.+++
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 24569999999999 999999999998877765
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.82 E-value=0.00071 Score=66.06 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=120.0
Q ss_pred cccCCCeecCCCCCeEEEEEcCCCceE-EEEecccCCCeEEEEecC-CCCEEEEEeCCCc-------eeecCCCcEEEec
Q 016134 140 HWLLGNCVRGDECRFLHSWFCGEGLTM-LAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT-------AWNIESSAEFSLD 210 (394)
Q Consensus 140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~-~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~-------vWd~~~~~~~~~~ 210 (394)
..++.+..+| .|-+-........ .....+|....++++|++ |.+.||.| .|.. |||+.++-.....
T Consensus 71 cIlavG~atG----~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke 145 (783)
T KOG1008|consen 71 CILAVGSATG----NISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKE 145 (783)
T ss_pred hhhhhccccC----ceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcccCCccceecccccCCCcc
Confidence 3455555555 6666665433222 334467889999999988 45556655 5544 8999887432110
Q ss_pred CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEE---c
Q 016134 211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLC---W 284 (394)
Q Consensus 211 ~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~---~ 284 (394)
... +.++.. ....+++|. ..++.+|.....++++|++.. .....+ .+..+..+.. .
T Consensus 146 -------~~~-----fs~~~l----~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 146 -------SPL-----FSSSTL----DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred -------ccc-----cccccc----cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 001 111112 223366675 567888888899999999832 112222 1222333333 3
Q ss_pred CCEEEEEeCCCcEEEEE-eCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCc------
Q 016134 285 DQFLLSCSLDHTIKVWF-ATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFM------ 353 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd-~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~------ 353 (394)
++++++-. |+.|.+|| .++-+.......+.. +.....+.++....| ++++. -+.++|++||+..-.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccccCCccccc
Confidence 77887765 89999999 443332222222221 122344443333344 45444 455889999976321
Q ss_pred --eeE---E---Eec-C--CcEEEEEECCCC---EEEEEeCCCeEEEEeC
Q 016134 354 --ERG---R---IFS-K--HEVRVIEIGPDK---LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 354 --~~~---~---~~~-~--~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~ 389 (394)
... . +.+ . ..|.+..|++.. ..+++-..-++.-+++
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 000 0 112 1 458888888754 4555544444544444
No 339
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.77 E-value=0.38 Score=43.13 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=113.0
Q ss_pred eEEEEecccC--CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134 165 TMLAKLEGHE--KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV 238 (394)
Q Consensus 165 ~~~~~l~~h~--~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V 238 (394)
+.+.++. |. .-...+.|..++.++-+.+.-|. .+|+++++........ +..+.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---------~~~Fg----------- 92 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---------PRYFG----------- 92 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---------TT--E-----------
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---------ccccc-----------
Confidence 4444443 33 33556888778888889998887 5899998866322111 11111
Q ss_pred EEEEecCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134 239 TCLAVGRSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317 (394)
Q Consensus 239 ~~l~~~~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 317 (394)
..+...++. ..-.=.++...+||..+.+.+.++. ....=+.++.+++.|+......+|.++|..+-+....+......
T Consensus 93 EGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 93 EGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred eeEEEECCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence 112222222 3333467889999999999998886 34566888888887887777788999998776666655544332
Q ss_pred cceEEEE-eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----------------CCcEEEEEECCCC--EEEEE
Q 016134 318 NGVLALG-GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----------------KHEVRVIEIGPDK--LFFTG 378 (394)
Q Consensus 318 ~~~~~~~-~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------------~~~v~~l~~sp~~--~l~tg 378 (394)
..+..+. ..+ -+|. +.|=.=....|...|..+++....+.. ..-.+.||+.|.. +++||
T Consensus 172 ~pv~~LNELE~-i~G~-IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 172 RPVSNLNELEY-INGK-IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE---EEEEEE-ETTE-EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EECCCcEeEEE-EcCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 2211111 011 1555 666566667788889999988776632 1348999999887 66666
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.71 E-value=0.0044 Score=36.42 Aligned_cols=36 Identities=39% Similarity=0.456 Sum_probs=27.3
Q ss_pred ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 016134 266 EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 266 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd 301 (394)
+++..+..|...|.++.+. +.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556666777788888887 56788888888888885
No 341
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.033 Score=53.74 Aligned_cols=139 Identities=11% Similarity=0.102 Sum_probs=86.6
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---------CCEEEEEeCCCcEEEEEeCCCce--eeEeeccc
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---------DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHK 315 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~ 315 (394)
+|.++.....++-.|++.|+.+.+++-+.. |.-+.+. ...-+.|-.|..|.-||.|-... +.....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 466677777899999999999999987766 5545443 11233455688899999884332 22222222
Q ss_pred CC--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 316 ED--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 316 ~~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
.. ..-.++ +-..+| ++|+|+.+|.|++||--.......++. ..+|..|..+.+|..+.|..+..+.+-++.
T Consensus 427 y~~k~nFsc~--aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCF--ATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccee--eecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 11 111122 123344 799999999999999833333334444 778999999999922233335556665543
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0061 Score=35.79 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=30.2
Q ss_pred eEEEEecccCCCeEEEEecCCCCEEEEEeCCCce
Q 016134 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA 198 (394)
Q Consensus 165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v 198 (394)
+++..+..|...|.++.|.+++.++++++.|+.+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~ 36 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTI 36 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeE
Confidence 5677778899999999999999999999999973
No 343
>PHA02713 hypothetical protein; Provisional
Probab=96.59 E-value=0.2 Score=50.78 Aligned_cols=143 Identities=7% Similarity=0.012 Sum_probs=73.8
Q ss_pred EecCCeEEEEeCCC-----eEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCCC-------------------
Q 016134 242 AVGRSRLCSGSMDN-----TIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLDH------------------- 295 (394)
Q Consensus 242 ~~~~~~l~sgs~Dg-----~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg------------------- 295 (394)
...+.+.+.|+.++ +|..||..+.+ .+..+.........+.+.+.+.+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 34456666776653 48889987643 22222211122233344467777776542
Q ss_pred ----cEEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCC------CeEEEEECCC-C--ceeEEEec
Q 016134 296 ----TIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACND------NTVHLYELPS-F--MERGRIFS 360 (394)
Q Consensus 296 ----~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d------g~I~iwd~~~-~--~~~~~~~~ 360 (394)
.+..||..+.+- +..+.......... .-+++ +.+.|+.+ ..+..||..+ . ..+..+..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~------~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV------SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE------EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence 466777665432 11111111111111 12455 66667654 2467899886 3 33333332
Q ss_pred CCcEEEEEECCCC-EEEEEeCCC--eEEEEeCCCC
Q 016134 361 KHEVRVIEIGPDK-LFFTGDGAG--MLGVWKLLAK 392 (394)
Q Consensus 361 ~~~v~~l~~sp~~-~l~tgs~Dg--~I~vWd~~~~ 392 (394)
......++.. ++ +.++|+.|+ .+..||..+.
T Consensus 502 ~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 502 RLSALHTILH-DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ccccceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence 2222333333 45 888898888 6777777654
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.57 E-value=0.38 Score=48.36 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=98.1
Q ss_pred CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134 153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD 232 (394)
Q Consensus 153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~ 232 (394)
+.+.+.|.++. +...++.-- +....++++++++++++.+.+.. .+..+........-..+.|...
T Consensus 215 ~~vSvID~etm-eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE-----~G~tl~em~a~e~d~~vvfni~-------- 279 (635)
T PRK02888 215 SLFTAVDAETM-EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE-----EGVTLAEMMAAERDWVVVFNIA-------- 279 (635)
T ss_pred EEEEEEECccc-eEEEEEEeC-CCcccceECCCCCEEEEeccCcc-----cCcceeeeccccCceEEEEchH--------
Confidence 46777787764 444443322 24466788889999888875432 2222211000000012222111
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC-----CceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC
Q 016134 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT-----LEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG 304 (394)
Q Consensus 233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~ 304 (394)
.+..+.-++++... .++.|.+.|.++ .+.+..+. -......+.++ ++++++++ .+.+|.|.|+.+
T Consensus 280 ----~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 ----RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred ----HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00001112444444 367899999988 45555554 34556777777 67666555 589999999987
Q ss_pred Cceee-------EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134 305 RGNLE-------AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351 (394)
Q Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~ 351 (394)
.+... .....+-....-.+...|+++|. .+.+-..|..|..|++..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 44210 00011111222223445788987 888889999999999876
No 345
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.072 Score=47.65 Aligned_cols=166 Identities=10% Similarity=0.068 Sum_probs=98.9
Q ss_pred cccccccccCCCeecC-CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-------Cc--------
Q 016134 134 LKNVCCHWLLGNCVRG-DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-------GT-------- 197 (394)
Q Consensus 134 ~~~~~~~~~~~~~~~g-~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~-------- 197 (394)
+|++++.|+-..-.+- ..-+.|-|||...+++.+.++..|.-.-..+.|.+||+.|+.+... |.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 4999999984433222 3456899999999999999999999888999999999998877541 11
Q ss_pred -----eeecCCCcEEE---ec--CCCCcEEEEEEcCC-EEEEEecC-------------------------------CCC
Q 016134 198 -----AWNIESSAEFS---LD--GPVGEVYSMVVANE-MLFAGAQD-------------------------------GHT 235 (394)
Q Consensus 198 -----vWd~~~~~~~~---~~--~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~ 235 (394)
+-|..+++.+. +. .+...|..++..++ .+..++.- ...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 24434444431 11 23345666666666 44444322 112
Q ss_pred CCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEE
Q 016134 236 RPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 236 ~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd 301 (394)
..|-+|+.+ ..++ ++.-..+...+||..++..+..-. -..+..+.....-++..+.+|.+.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 234445554 2333 333345566778888877665322 122333444434444555667777663
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.58 Score=41.91 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=102.6
Q ss_pred EEecccCCCeEEEEecCCCCEEEEEeC-CCceeecC-CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134 168 AKLEGHEKAVSGIALPLRSDKLFSGSR-DGTAWNIE-SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG- 244 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~vWd~~-~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~- 244 (394)
+.+.+-...+..|+|+|+.+.|++... .+.|..+. +++.++. +.+. + ....-.|++-
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~---------i~l~----------g-~~D~EgI~y~g 74 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR---------IPLD----------G-FGDYEGITYLG 74 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE---------EE-S----------S--SSEEEEEE-S
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE---------EeCC----------C-CCCceeEEEEC
Confidence 456676778999999998776665554 44454333 2333321 1111 1 2345566665
Q ss_pred CCeEEEEe-CCCeEEEEeCCCCc------eeEEEc-----CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC---Cce
Q 016134 245 RSRLCSGS-MDNTIRVWELDTLE------PVMTLN-----DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG---RGN 307 (394)
Q Consensus 245 ~~~l~sgs-~Dg~V~iwd~~~~~------~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~---~~~ 307 (394)
++.++... .++.+.++++.... ....+. .+...+-.++|+ ++.|+.+-+..-..+|.+.. ...
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 44555544 48889888883311 112221 244568899998 56777777777777877754 222
Q ss_pred eeEee--ccc---CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC----------CcEEEEEECCC
Q 016134 308 LEAAY--THK---EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK----------HEVRVIEIGPD 372 (394)
Q Consensus 308 ~~~~~--~~~---~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----------~~v~~l~~sp~ 372 (394)
+.... ... .....++ .+.++|....+++-...+..|.++| .+++.+..+.-. ...-.|+|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S-~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLS-GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp -EEEE-HHHH-HT--SS----EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred eeeccccccccccceecccc-ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 21111 111 0011111 2235777666888888899999999 567666655442 14788999999
Q ss_pred CEEEEEeCCCeEEEE
Q 016134 373 KLFFTGDGAGMLGVW 387 (394)
Q Consensus 373 ~~l~tgs~Dg~I~vW 387 (394)
|.|...++-+...+|
T Consensus 233 G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 233 GNLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTEEEEE
T ss_pred CCEEEEcCCceEEEe
Confidence 977777777766655
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.082 Score=53.85 Aligned_cols=105 Identities=9% Similarity=0.051 Sum_probs=76.2
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP 212 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~ 212 (394)
|.|...++|.++++-...|.|.|+--....+.-.++. -.+++++|+|..-.|+.|-.-|. +|...+.+.....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~-- 97 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV-- 97 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCceeeeec--
Confidence 8888888898999888889999985422211111222 23566999998888888776665 6877666544321
Q ss_pred CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134 213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD 263 (394)
Q Consensus 213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~ 263 (394)
..|..+|..+.|+ |+.++++..-|.|.+|...
T Consensus 98 -------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 -------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 1688888888887 7889999999999999765
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.89 Score=44.18 Aligned_cols=150 Identities=17% Similarity=0.063 Sum_probs=76.4
Q ss_pred CCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE-------cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCc-
Q 016134 236 RPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL-------NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRG- 306 (394)
Q Consensus 236 ~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~- 306 (394)
+.|.++.|. ...|++...||.+++||+. |+....+ .-....+....+.+.=++.-..++.+.+.+-....
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~ 159 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV 159 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence 788999997 6678888999999999996 3331111 11112222223331222222334444443221111
Q ss_pred eeeEe---ecccC---CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe
Q 016134 307 NLEAA---YTHKE---DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD 379 (394)
Q Consensus 307 ~~~~~---~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs 379 (394)
....+ ..... ..........++.+.. ..+....++.+.+.+-...+. +...+++..|++||++ +||.-.
T Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred hhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence 11111 11000 0000000011233444 344444556666544433211 3335689999999999 888888
Q ss_pred CCCeEEEEeCC
Q 016134 380 GAGMLGVWKLL 390 (394)
Q Consensus 380 ~Dg~I~vWd~~ 390 (394)
.+|.+.+...+
T Consensus 236 ~~g~l~v~ssD 246 (410)
T PF04841_consen 236 DSGNLWVVSSD 246 (410)
T ss_pred CCCCEEEEECc
Confidence 88998887644
No 349
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.0086 Score=51.65 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=79.8
Q ss_pred EEEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL 326 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
+..-+.|+.|+-++++..+.... -.-|... ..+.-.+..++.|+.+|.|.+|......................+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip-- 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP-- 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc--
Confidence 44557789999998875442211 1112222 2332237789999999999999876322222222111111111110
Q ss_pred ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-C-CcEE-EEEECCCCEEEEE--eCCCeEEEEeCCC
Q 016134 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-K-HEVR-VIEIGPDKLFFTG--DGAGMLGVWKLLA 391 (394)
Q Consensus 327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-~~v~-~l~~sp~~~l~tg--s~Dg~I~vWd~~~ 391 (394)
--.++. +..+++.|+.|+.|++.-.+.+....+ . .++. .+....++.|+.. |.|..++.|++..
T Consensus 110 ~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccc-eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 122233 788899999999999998777665544 2 2333 3333334466666 7777788887653
No 350
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.28 E-value=0.21 Score=50.62 Aligned_cols=214 Identities=13% Similarity=0.128 Sum_probs=111.9
Q ss_pred CCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc-------eeecCCCcEEEecCCCCcEEEE
Q 016134 149 GDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT-------AWNIESSAEFSLDGPVGEVYSM 219 (394)
Q Consensus 149 g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~-------vWd~~~~~~~~~~~~~~~v~~l 219 (394)
+.....+..+|..++ +.....+. +...-.++++. ++...++|+.| +. .+|..+++-.......
T Consensus 297 ~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~------ 368 (571)
T KOG4441|consen 297 GQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN------ 368 (571)
T ss_pred CcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCcc------
Confidence 455568888998776 34444444 33334445543 45788899999 44 4666666643322111
Q ss_pred EEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCC-----eEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEe
Q 016134 220 VVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN-----TIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCS 292 (394)
Q Consensus 220 ~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg-----~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s 292 (394)
......-.....+.+.++|+.|| +|..||.++.+ .+..+.......-.+.+.+.+.++|+
T Consensus 369 -------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 369 -------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred -------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence 11111112233466777888776 57788887644 22222222222333344477778887
Q ss_pred CCC------cEEEEEeCCCcee--eEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEECCCCceeEEEe
Q 016134 293 LDH------TIKVWFATGRGNL--EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYELPSFMERGRIF 359 (394)
Q Consensus 293 ~Dg------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~ 359 (394)
.++ ++..||..+..-. ..+........+.. -++. +.+.|+.|+ +|..||..+.+-...-.
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~------~~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV------LNGK-IYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEE------ECCE-EEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 554 5677777654322 12222221122222 2455 788888776 37778888765433322
Q ss_pred cCCc--EEEEEECCCCEEEEEeCCCe-----EEEEeCC
Q 016134 360 SKHE--VRVIEIGPDKLFFTGDGAGM-----LGVWKLL 390 (394)
Q Consensus 360 ~~~~--v~~l~~sp~~~l~tgs~Dg~-----I~vWd~~ 390 (394)
.... -..++...+.+.+.|+.||. |..||-.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 2222 22222222227888888774 5556543
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.20 E-value=0.48 Score=43.08 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=83.1
Q ss_pred cCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCceeeEee--------
Q 016134 244 GRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGNLEAAY-------- 312 (394)
Q Consensus 244 ~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------- 312 (394)
.++.|+.|..+| |.++++. ..+.....+ ...|..+.... +.|++- .|+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence 478899999998 8999983 333333322 33488888773 444443 35999999987644333110
Q ss_pred ----cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-----ceeEEEecCCcEEEEEECCCCEEEEEeCCCe
Q 016134 313 ----THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-----MERGRIFSKHEVRVIEIGPDKLFFTGDGAGM 383 (394)
Q Consensus 313 ----~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~ 383 (394)
.......+..++..-...+...|+++. ..+|.||..... ....++.....+..++|.++ .|+.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~-~i~v~~~~~- 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN-KICVGTSKG- 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC-EEEEEeCCc-
Confidence 111112222222111234443555444 558999987653 45566666889999999955 555555443
Q ss_pred EEEEeCCC
Q 016134 384 LGVWKLLA 391 (394)
Q Consensus 384 I~vWd~~~ 391 (394)
..+.|+.+
T Consensus 159 f~~idl~~ 166 (275)
T PF00780_consen 159 FYLIDLNT 166 (275)
T ss_pred eEEEecCC
Confidence 66677664
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.18 E-value=1.1 Score=41.75 Aligned_cols=232 Identities=13% Similarity=0.136 Sum_probs=130.3
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc------------eeecCCCcEE---EecCC-C----
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT------------AWNIESSAEF---SLDGP-V---- 213 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~------------vWd~~~~~~~---~~~~~-~---- 213 (394)
.++|.|..++ +.+-.+.. +-.-.+..+|+++.+++++.--. +||.++.... .+... .
T Consensus 18 rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 6899998877 66655543 23334677999999998764211 6999987654 22211 1
Q ss_pred CcEEEEEEcCC--EEEEEecC---------CCCC-CEEEEE-------e--cCCeEEEEeCCCeEEEEeCC-CCceeEEE
Q 016134 214 GEVYSMVVANE--MLFAGAQD---------GHTR-PVTCLA-------V--GRSRLCSGSMDNTIRVWELD-TLEPVMTL 271 (394)
Q Consensus 214 ~~v~~l~~~~~--~l~~~~~~---------~h~~-~V~~l~-------~--~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~ 271 (394)
.....++++.+ ++++.... -... -+..+. + .+..|.+-+.||++.-..+. .|+..++.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 01112334433 33332222 1222 222221 1 14668888999999999887 45554332
Q ss_pred ----cCCCCCcE-EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE--eecc----------cCCcceEEEEeeECCCCC
Q 016134 272 ----NDHTDAPM-SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA--AYTH----------KEDNGVLALGGLNDPDGK 332 (394)
Q Consensus 272 ----~~h~~~v~-~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~----------~~~~~~~~~~~~~s~~g~ 332 (394)
.....++. .-.+. +..++-.+.+|.|+--|+........ +... ...-..+++ ++...
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~----~~~~~ 250 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY----HAASG 250 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE----ETTTT
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee----ccccC
Confidence 11222222 22222 45666678899999999876542211 1100 011122333 44443
Q ss_pred cEEEEEe--CCC-------eEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEE-eCCCeEEEEeCCCC
Q 016134 333 PVLICAC--NDN-------TVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTG-DGAGMLGVWKLLAK 392 (394)
Q Consensus 333 ~~l~sgs--~dg-------~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tg-s~Dg~I~vWd~~~~ 392 (394)
.+++--. .++ .|-+||+.+.+.+..+..++++.+|+++.+. +|++. ..++.|.+||..+.
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 2333221 111 4778899999999999888889999999987 66554 56899999998764
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.02 Score=56.19 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=56.9
Q ss_pred eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEE-EEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134 326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVR-VIEIGPDK-LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~-~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~ 393 (394)
.|+|.-. ++|.+..+|.|.+..+. .+.+..+. ....++ +++|.||| .|+.|-.||+|++-|+.++.
T Consensus 27 ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 27 EWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred EEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 4688887 99999999999999998 67777777 455566 99999999 99999999999999998764
No 354
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.97 E-value=0.33 Score=49.09 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC---
Q 016134 276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP--- 350 (394)
Q Consensus 276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--- 350 (394)
..+.-+..+ ++..++-+...++.|||.+....... ........+..+.+...|+++ .+++-+....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchh
Confidence 334444433 44444444556899999987653222 223344567778888899999 55556678889988532
Q ss_pred ------CCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 351 ------SFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 351 ------~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
+...+..+.- .++|....|.++|.|+.|+. +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEEC
Confidence 2233333322 68899999999996666654 4677776
No 355
>PHA02713 hypothetical protein; Provisional
Probab=95.88 E-value=0.3 Score=49.50 Aligned_cols=92 Identities=10% Similarity=0.170 Sum_probs=47.8
Q ss_pred CeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCC------CcEEEEEeCC-Cc--eeeEeecccCCcceEEE
Q 016134 255 NTIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLD------HTIKVWFATG-RG--NLEAAYTHKEDNGVLAL 323 (394)
Q Consensus 255 g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~D------g~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~ 323 (394)
.+|..||.++.+ .+..+.........+.+.++..+.|+.+ ..+..||..+ .+ .+..+...........
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~- 510 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL- 510 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-
Confidence 357889987643 2222221112222333446666667654 2466788775 22 2222221111112222
Q ss_pred EeeECCCCCcEEEEEeCCC--eEEEEECCCCc
Q 016134 324 GGLNDPDGKPVLICACNDN--TVHLYELPSFM 353 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~ 353 (394)
-+++ +.++|+.|+ .+..||..+.+
T Consensus 511 -----~~~~-iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 -----HDNT-IMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -----ECCE-EEEEeeecceeehhhcCccccc
Confidence 2566 888898888 77788877654
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.87 E-value=0.042 Score=35.27 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=28.1
Q ss_pred CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
...|..++|+|.. +||.+..||.|.++.++-
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 5679999999999 999999999999999843
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.53 Score=45.84 Aligned_cols=179 Identities=15% Similarity=0.048 Sum_probs=85.5
Q ss_pred EEEecccCCCeEEEEecCCCCEEEEEeCCCc------eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC 240 (394)
Q Consensus 167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~ 240 (394)
.+.+..-...+..-+|+|+++.++-.+.... ++++++++...+.... ++. ..
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-------------------g~~---~~ 242 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-------------------GNN---GA 242 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-------------------Ccc---CC
Confidence 3444444556677788888876654432211 4666665543322111 111 11
Q ss_pred EEec--CC-eEEEEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEE--EeCCCceeeE
Q 016134 241 LAVG--RS-RLCSGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVW--FATGRGNLEA 310 (394)
Q Consensus 241 l~~~--~~-~l~sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vw--d~~~~~~~~~ 310 (394)
.+|+ ++ ++++...|+. |.++|+.+.+. ..+..-.+.-..=.|+ |+.++-.+ ..|.-.|| |.......+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 1343 34 3555566775 45557776553 3343222211122233 66655544 45554444 5544333222
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFSKHEVRVIEIGPDK 373 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~ 373 (394)
........ ...++|+|+.+++....+|. |.+.|+.++.....+........-.|.+++
T Consensus 322 --T~~~~~~~---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 322 --TFSGGGNS---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG 381 (425)
T ss_pred --eccCCCCc---CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence 22222222 33469999955555544455 777777766543333332223344455555
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.054 Score=53.29 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=67.9
Q ss_pred CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
..+.-+.|+ -+++|.+..+|.|.+..+. .+.+-++..+..... .+.+|.|||+ +||.|-.||+|++.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~---~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT---ASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc---eeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 345667777 4689999999999888886 555555554444443 2345799999 99999999999999999998
Q ss_pred eeEEE--ecCCcEEEEEECC
Q 016134 354 ERGRI--FSKHEVRVIEIGP 371 (394)
Q Consensus 354 ~~~~~--~~~~~v~~l~~sp 371 (394)
.+... .-...|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 77763 2366788888864
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.84 E-value=0.0024 Score=62.52 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=95.9
Q ss_pred CCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEc---CCEEEEEe----CCCcEEEEE
Q 016134 235 TRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCW---DQFLLSCS----LDHTIKVWF 301 (394)
Q Consensus 235 ~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~---~~~l~s~s----~Dg~i~vwd 301 (394)
...+.|+++. .-.++.|..+|.|-+-.++...- -....+|....++++|. .+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3455666653 24588899999999998865332 22335678889999998 24566553 366899999
Q ss_pred eCCC--ceee--EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECC-CC-EE
Q 016134 302 ATGR--GNLE--AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGP-DK-LF 375 (394)
Q Consensus 302 ~~~~--~~~~--~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-~~-~l 375 (394)
+.+. .+.. .+... ...... .++|..+.+ ++.+|.....++++|++.............+..+.+.| .. ++
T Consensus 136 i~s~ltvPke~~~fs~~-~l~gqn--s~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSS-TLDGQN--SVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccc-cccCcc--ccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce
Confidence 9765 1111 12210 111111 233566666 88889888999999999543333333345677788888 44 66
Q ss_pred EEEeCCCeEEEEe
Q 016134 376 FTGDGAGMLGVWK 388 (394)
Q Consensus 376 ~tgs~Dg~I~vWd 388 (394)
++-. |+.|-+||
T Consensus 212 cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 212 CSNS-DGDIAIWD 223 (783)
T ss_pred eccc-cCceeecc
Confidence 5554 99999999
No 360
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=1 Score=46.30 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134 128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE 202 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~ 202 (394)
.++++. |.|....++.+--.| .+.+|...+. +.-.....|..+|..+.|+++|..|+|+..=|. +|...
T Consensus 61 hatSLC-WHpe~~vLa~gwe~g----~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLC-WHPEEFVLAQGWEMG----VSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhc-cChHHHHHhhccccc----eeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345566 999888888666555 8999998765 555566789999999999999999999998888 48765
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.43 E-value=1.6 Score=41.54 Aligned_cols=266 Identities=14% Similarity=-0.023 Sum_probs=124.9
Q ss_pred CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134 93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG 172 (394)
Q Consensus 93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~ 172 (394)
...+.|+|++++....... + ...+.... |+|++.+++-.. + .-|.+++..++.....+..|
T Consensus 22 ~~~y~i~d~~~~~~~~l~~------------~-~~~~~~~~-~sP~g~~~~~v~-~----~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP------------P-PPKLQDAK-WSPDGKYIAFVR-D----NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEETTTTEEEESS-------------E-ETTBSEEE-E-SSSTEEEEEE-T----TEEEEESSTTSEEEESES--
T ss_pred ceeEEEEecCCCceEECcC------------C-ccccccce-eecCCCeeEEEe-c----CceEEEECCCCCeEEecccc
Confidence 4567788888876543221 1 22344444 999999887433 2 26888887666333233333
Q ss_pred c----------------CCCeEEEEecCCCCEEEEEeCCCc------e-eecCCCc----EEE----ecCCCCcEEEEEE
Q 016134 173 H----------------EKAVSGIALPLRSDKLFSGSRDGT------A-WNIESSA----EFS----LDGPVGEVYSMVV 221 (394)
Q Consensus 173 h----------------~~~V~~l~~s~~~~~l~sgs~Dg~------v-Wd~~~~~----~~~----~~~~~~~v~~l~~ 221 (394)
- -+.-.++.|+||+++|+....|.. + +-..... ... ..+...+...+-+
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v 162 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFV 162 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEE
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEE
Confidence 0 122366889999999999988776 2 2222211 111 1122222222211
Q ss_pred ---cCC-E-EEEEe--cCCCCCCEEEEEec--CCeEEEEe--CCC---eEEEEeCCCCceeEEEcC-CCCCc---EEEEE
Q 016134 222 ---ANE-M-LFAGA--QDGHTRPVTCLAVG--RSRLCSGS--MDN---TIRVWELDTLEPVMTLND-HTDAP---MSLLC 283 (394)
Q Consensus 222 ---~~~-~-l~~~~--~~~h~~~V~~l~~~--~~~l~sgs--~Dg---~V~iwd~~~~~~~~~~~~-h~~~v---~~l~~ 283 (394)
... . .+... ...-...+..+.|. +..|+..- .+. .+.++|..++++...++. ....| ....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 111 0 11100 11234456677775 33233332 222 466677776654333321 22222 23333
Q ss_pred c----CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCce
Q 016134 284 W----DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFME 354 (394)
Q Consensus 284 ~----~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~~ 354 (394)
. +.+|.....||.-.|+-+..... ...+.... -.+.. ...++++++.++.++..+. .|..-++..+..
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~--~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD--WEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS--S-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc--eeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 2 34555566777666654443322 22222222 22222 2235777776777776533 455555662334
Q ss_pred eEEEecCCcE-EEEEECCCC--EEEEEeC
Q 016134 355 RGRIFSKHEV-RVIEIGPDK--LFFTGDG 380 (394)
Q Consensus 355 ~~~~~~~~~v-~~l~~sp~~--~l~tgs~ 380 (394)
+..+...... ..+.|+|++ ++.+.+.
T Consensus 320 ~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 320 PKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 4444442222 589999998 5555544
No 362
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.30 E-value=1.9 Score=41.68 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=88.2
Q ss_pred CeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCCC---------
Q 016134 246 SRLCSGSMDNTIRVWELDTLE-----PVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATGR--------- 305 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~--------- 305 (394)
+.|++||.+|.++||+....+ .+.+. .-..+|..+..- +...++.=.-+.+.||.+...
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 689999999999999986533 22222 245678887753 223334455678888887321
Q ss_pred ceeeEeecccCCcceEEEEee-E-CCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCC
Q 016134 306 GNLEAAYTHKEDNGVLALGGL-N-DPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAG 382 (394)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~-s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg 382 (394)
-.+...+.|.-......++.- | ...+..+|.+-+.||.+.+|+-+.......+..---..-+.+.+.- .|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 133445555544444444321 2 2233458888999999999998775443333331112234555655 888888888
Q ss_pred eEEEEeC
Q 016134 383 MLGVWKL 389 (394)
Q Consensus 383 ~I~vWd~ 389 (394)
.|..|+.
T Consensus 197 ~l~~Yky 203 (418)
T PF14727_consen 197 TLECYKY 203 (418)
T ss_pred eEEEecH
Confidence 8888765
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.18 E-value=3 Score=39.62 Aligned_cols=233 Identities=15% Similarity=0.080 Sum_probs=119.1
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCC------------------C
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPV------------------G 214 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~------------------~ 214 (394)
.+.|+|++++ + +..+......+....|+|+|+.|+-...... +++..++....+.... +
T Consensus 24 ~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 24 DYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred eEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 7889999886 3 3333333788999999999999998876543 4666666555332211 2
Q ss_pred cEEEEEEcCC--EEEEEecCCCCCCEEEEE-ec-C-C---eEE------EEeCCC--eEEEEeCCCCceeE-EE----cC
Q 016134 215 EVYSMVVANE--MLFAGAQDGHTRPVTCLA-VG-R-S---RLC------SGSMDN--TIRVWELDTLEPVM-TL----ND 273 (394)
Q Consensus 215 ~v~~l~~~~~--~l~~~~~~~h~~~V~~l~-~~-~-~---~l~------sgs~Dg--~V~iwd~~~~~~~~-~~----~~ 273 (394)
.-..+-|+|+ .|+....|...-+...+. +. + . .+. .|...- .+.|+|+.+++... .. ..
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence 2346788998 666666663332222222 22 1 1 111 122223 45668998776532 11 12
Q ss_pred CCCCcEEEEEc--CCEEEEE--eCCC---cEEEEEeCCCceeeEeecccC-CcceEEEEeeE-CCCCCcEEEEEeCCCeE
Q 016134 274 HTDAPMSLLCW--DQFLLSC--SLDH---TIKVWFATGRGNLEAAYTHKE-DNGVLALGGLN-DPDGKPVLICACNDNTV 344 (394)
Q Consensus 274 h~~~v~~l~~~--~~~l~s~--s~Dg---~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-s~~g~~~l~sgs~dg~I 344 (394)
-...+..+.|. +..|+.. ..+. .+.+.|..++........... ...... ...+ .+++..+|.....||.-
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~ 260 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYR 260 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCc
Confidence 34456777776 3424433 3332 466678776554333322211 111111 1112 36666677777788766
Q ss_pred EEEE--CCCCceeEEEec-CCcEEE-EEECCCC--EEEEEeCCC--eEEEEeCC
Q 016134 345 HLYE--LPSFMERGRIFS-KHEVRV-IEIGPDK--LFFTGDGAG--MLGVWKLL 390 (394)
Q Consensus 345 ~iwd--~~~~~~~~~~~~-~~~v~~-l~~sp~~--~l~tgs~Dg--~I~vWd~~ 390 (394)
+||- ...+... .+.. .-.|.. +.+++++ +++++..+. .-.||.+.
T Consensus 261 hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 261 HLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred EEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 6554 4444322 3322 445754 6778876 566666533 44455443
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=4.2 Score=43.67 Aligned_cols=106 Identities=11% Similarity=0.133 Sum_probs=61.5
Q ss_pred EEEEEc--CCEEEEEe----CC-CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE---eCCCeEEEEE
Q 016134 279 MSLLCW--DQFLLSCS----LD-HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA---CNDNTVHLYE 348 (394)
Q Consensus 279 ~~l~~~--~~~l~s~s----~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg---s~dg~I~iwd 348 (394)
+++.|- |+++++.. .+ +.|+|||-+ + .+...... ...+.-+..|-|.|. ++++- ..|+.|.+|.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~---~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEP---VEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCc---ccccccceeecCCCC-eEeeeeecCCCCcEEEEe
Confidence 456666 67887732 24 799999965 2 22222111 111122234578888 67664 3466788887
Q ss_pred CCCC---ceeEEEec-CCcEEEEEECCCC-EEEE---EeCCCeEEEEeCC
Q 016134 349 LPSF---MERGRIFS-KHEVRVIEIGPDK-LFFT---GDGAGMLGVWKLL 390 (394)
Q Consensus 349 ~~~~---~~~~~~~~-~~~v~~l~~sp~~-~l~t---gs~Dg~I~vWd~~ 390 (394)
-..- +-....+. ..+|..++|+.++ .|++ ......|++|-+.
T Consensus 273 rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 273 RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 5422 11112222 3349999999999 6666 4455559999754
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.08 E-value=3.7 Score=40.21 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=92.9
Q ss_pred EEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC-EEEEE----------ecCCCC
Q 016134 168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE-MLFAG----------AQDGHT 235 (394)
Q Consensus 168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~----------~~~~h~ 235 (394)
+.+-...-....|.++|++++++.++.... |+.....+.... +.-....|... .+++- ..+...
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 334445556889999999999998654443 444322222111 11112222222 11111 111111
Q ss_pred -------CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC-
Q 016134 236 -------RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR- 305 (394)
Q Consensus 236 -------~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~- 305 (394)
..+..| |.|.+|...+.+ .|.+||+.+++.+..+... +|..+.|+ +++++..+.+ .+.+++....
T Consensus 102 ~k~i~~~~~~~~I-f~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 102 VKSIKLPFSVEKI-FGGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp T-----SS-EEEE-E-SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred ceEEcCCcccceE-EcCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 112222 226666666544 8999999999999998743 48899999 6788877754 6788775432
Q ss_pred ----------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-
Q 016134 306 ----------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK- 373 (394)
Q Consensus 306 ----------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~- 373 (394)
.....+......+.... |..+ -++.+ ... .|+. +..++ ...+.+ ..++.-+...++.
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~----W~~d--~fiYt-T~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGC----WVED--CFIYT-TSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEE----EETT--EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTT
T ss_pred cccccccCchhceEEEEEecceeEEEE----EEcC--EEEEE-cCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCC
Confidence 02222222122222222 2322 13333 222 5554 33332 222333 5567777777755
Q ss_pred EEEEEeCCCeEEEEeCC
Q 016134 374 LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 374 ~l~tgs~Dg~I~vWd~~ 390 (394)
.++....|+.|..+.++
T Consensus 246 ~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-TT--EEEEE--
T ss_pred EEEEEECCCCEEEEEEC
Confidence 88888889888888765
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.15 Score=53.46 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCEEEEEecCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY 312 (394)
Q Consensus 236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 312 (394)
..+.+.+.-...++.|+..|.|-..|+... .+...-+.-.++|++++|+ |.+++.|-.+|.|.+||+...+.++.+.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 344445555667888888899999888653 2222223346789999998 7788888889999999999888888887
Q ss_pred cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348 (394)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd 348 (394)
.+..+...+-.. .+..++. .++++..-|. +|.
T Consensus 170 e~~ap~t~vi~v-~~t~~nS-~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 EHGAPVTGVIFV-GRTSQNS-KLLTSDTGGS--FWK 201 (1206)
T ss_pred ecCCccceEEEE-EEeCCCc-EEEEccCCCc--eEE
Confidence 776665544333 2344555 6777766665 454
No 367
>smart00356 ZnF_C3H1 zinc finger.
Probab=94.86 E-value=0.015 Score=32.31 Aligned_cols=23 Identities=30% Similarity=0.824 Sum_probs=19.6
Q ss_pred CceeEEEeeeCccCCC-CCccccc
Q 016134 36 NKVVCVYVLEGRCNRN-PCRFAHT 58 (394)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~h~ 58 (394)
...+|.+|+.|.|++- .|+|+|.
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 3458999999999995 5999986
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.11 Score=45.07 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=61.6
Q ss_pred CCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccC-Ccc
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPV-MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNG 319 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~ 319 (394)
...+++|+.||.|.+|........ ..+..-...|.++... +.+..+++.|+.|+.|++.-.+.+...-.|.. +..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 567999999999999988621111 1111112333333333 44888899999999999877666655555542 222
Q ss_pred eEEEEeeECCCCCcEEEEE--eCCCeEEEEECCCC
Q 016134 320 VLALGGLNDPDGKPVLICA--CNDNTVHLYELPSF 352 (394)
Q Consensus 320 ~~~~~~~~s~~g~~~l~sg--s~dg~I~iwd~~~~ 352 (394)
...+ ...++ +|+.+ +.|..++.|++...
T Consensus 150 ~~iv----v~sd~-~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIV----VGSDE-FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEE----ecCCc-eEEeeccccchhhhhcchhhh
Confidence 2221 22333 55555 66777777777654
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.79 E-value=1.2 Score=46.45 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=82.0
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCC-eEEEEecC------CCCEEEEEeCCCc-eeecCCCc--EEEecCCCCcEEEEE
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKA-VSGIALPL------RSDKLFSGSRDGT-AWNIESSA--EFSLDGPVGEVYSMV 220 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~-V~~l~~s~------~~~~l~sgs~Dg~-vWd~~~~~--~~~~~~~~~~v~~l~ 220 (394)
....|+-.|++.+ +.+.+...|... |..++=.. ..+.++.-+.++. .||.+-.. .+....+.
T Consensus 502 ~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~------- 573 (794)
T PF08553_consen 502 NPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ------- 573 (794)
T ss_pred CCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc-------
Confidence 3447888899888 888888887754 66654321 1223333333333 37776432 11100000
Q ss_pred EcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134 221 VANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI 297 (394)
Q Consensus 221 ~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i 297 (394)
+ .......|++-. ..+||+|+.+|.||+||--..+....|.+-..+|..|... |++|++.+ +..|
T Consensus 574 Y-----------~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyL 641 (794)
T PF08553_consen 574 Y-----------SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYL 641 (794)
T ss_pred c-----------ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceE
Confidence 0 233456677766 6799999999999999953333334455677899999888 77766554 4677
Q ss_pred EEEEe
Q 016134 298 KVWFA 302 (394)
Q Consensus 298 ~vwd~ 302 (394)
.|++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 78875
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.47 E-value=2.5 Score=42.96 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=95.0
Q ss_pred cccccCCCeecC-CCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEEE
Q 016134 138 CCHWLLGNCVRG-DECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEFS 208 (394)
Q Consensus 138 ~~~~~~~~~~~g-~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~~ 208 (394)
+..|++++-.+| ..-..+..||..++ +..+..+........... -+|...+.|+.||. .||..+.+...
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 344455444423 34467888888655 233333333322222222 26888899999987 37766655432
Q ss_pred ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCC------eEEEEeCCCCc--eeEEEcCCCCCcEE
Q 016134 209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN------TIRVWELDTLE--PVMTLNDHTDAPMS 280 (394)
Q Consensus 209 ~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg------~V~iwd~~~~~--~~~~~~~h~~~v~~ 280 (394)
....... ....-...+.+.+.++|+.|+ +|..||..+.+ .+..+..-......
T Consensus 411 va~m~~~-------------------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 411 VAPMLTR-------------------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV 471 (571)
T ss_pred cCCCCcc-------------------eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceE
Confidence 2211111 111222334566677777444 67888887754 22222222222223
Q ss_pred EEEcCCEEEEEeCCC-----cEEEEEeCCCceeeE--eecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEE
Q 016134 281 LLCWDQFLLSCSLDH-----TIKVWFATGRGNLEA--AYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYE 348 (394)
Q Consensus 281 l~~~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd 348 (394)
....+.+.+.|+.|+ +|..||.++.+-... +........+.. -++. +.++|+.|+ +|..||
T Consensus 472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~------~~~~-ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV------LGGK-LYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE------ECCE-EEEEecccCccccceeEEcC
Confidence 334477777777776 366687765433222 111111112222 2455 777787775 466676
Q ss_pred CCCC
Q 016134 349 LPSF 352 (394)
Q Consensus 349 ~~~~ 352 (394)
..+.
T Consensus 545 p~~d 548 (571)
T KOG4441|consen 545 PETD 548 (571)
T ss_pred CCCC
Confidence 6554
No 371
>PHA03098 kelch-like protein; Provisional
Probab=94.38 E-value=2.4 Score=42.78 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=66.7
Q ss_pred ecCCeEEEEeCC-----CeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCC------CcEEEEEeCCCceee
Q 016134 243 VGRSRLCSGSMD-----NTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLD------HTIKVWFATGRGNLE 309 (394)
Q Consensus 243 ~~~~~l~sgs~D-----g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~D------g~i~vwd~~~~~~~~ 309 (394)
+.+.+++.|+.+ ..+..||..+.+- ...+.........+...+.+.+.|+.+ ..+..||..+.+-..
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 345556666654 3577888876442 111111111222233336666666632 457888876543211
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEE--EecC-CcEEEEEECCCC-EEEE
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGR--IFSK-HEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~--~~~~-~~v~~l~~sp~~-~l~t 377 (394)
...........+.. ..++. +++.|+.+ ..+.+||..+.+-... +... .....+.+ ++ +++.
T Consensus 421 -~~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 421 -GSPLPISHYGGCAI---YHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV 493 (534)
T ss_pred -cCCCCccccCceEE---EECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE
Confidence 11111111111111 22455 66666643 2388899876543221 1111 11122222 45 6666
Q ss_pred EeCC-----CeEEEEeCCCC
Q 016134 378 GDGA-----GMLGVWKLLAK 392 (394)
Q Consensus 378 gs~D-----g~I~vWd~~~~ 392 (394)
|+.+ ..|.+||..++
T Consensus 494 GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcCCcccceeEEEeCCCC
Confidence 6654 46788887653
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.26 E-value=6.8 Score=39.47 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=37.9
Q ss_pred CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC
Q 016134 295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH 362 (394)
Q Consensus 295 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 362 (394)
+.|.-+|+.+++..-............ + .-.+. +++.+..||.++.+|.++++++-.+....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l----~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-L----ATAGD-LVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-e----EECCc-EEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 456667777665544333211111111 1 11344 67778889999999999999998876643
No 373
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=2.5 Score=36.44 Aligned_cols=174 Identities=15% Similarity=0.082 Sum_probs=95.1
Q ss_pred CCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEE
Q 016134 185 RSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVW 260 (394)
Q Consensus 185 ~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iw 260 (394)
++.++.+.+.-|. +||+++++........ ++.++.-+...-.+.+..+ .-.||...++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---------~~~~FgEGit~~gd~~y~L---------Tw~egvaf~~ 116 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---------PDTVFGEGITKLGDYFYQL---------TWKEGVAFKY 116 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC---------CccccccceeeccceEEEE---------EeccceeEEE
Confidence 5677778777766 6999988876321111 1111100000111223333 3457888899
Q ss_pred eCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134 261 ELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN 340 (394)
Q Consensus 261 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~ 340 (394)
|.++.+++..+. ..+.=+.++..++.|+.+....+++.-|..+-.....+........+..+.-.---+|. +.|---.
T Consensus 117 d~~t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~-lyANVw~ 194 (262)
T COG3823 117 DADTLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE-LYANVWQ 194 (262)
T ss_pred ChHHhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE-EEEeeee
Confidence 999988887775 45666888888777777766666766665443333222222211111111100012454 4554444
Q ss_pred CCeEEEEECCCCceeEEEec-------------CCcEEEEEECCCC--EEEEE
Q 016134 341 DNTVHLYELPSFMERGRIFS-------------KHEVRVIEIGPDK--LFFTG 378 (394)
Q Consensus 341 dg~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~sp~~--~l~tg 378 (394)
+..|...|..+++.+..+.. ..-.+.+++.|++ +++||
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55566667777766554432 2247889999987 56665
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.86 E-value=2.6 Score=41.33 Aligned_cols=135 Identities=12% Similarity=0.031 Sum_probs=71.1
Q ss_pred EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134 238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTH 314 (394)
Q Consensus 238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 314 (394)
...+.++ ++.+++ +.||.-.||.....+.... +.-..+.|. .+.+|+-...++|.++.--+.+....+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~- 107 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL- 107 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-
Confidence 4455665 445555 6688888888544443332 222345565 56677777788899973222111112211
Q ss_pred cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+..+-.+ |. |. +|...+. +.|.+||..+++.+..+... .|..+.|++++ +++..+.+ .+.|.+.+
T Consensus 108 --~~~~~~I---f~--G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 108 --PFSVEKI---FG--GN-LLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp --SS-EEEE---E---SS-SEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred --CcccceE---Ec--Cc-EEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 1223333 33 66 5555554 48999999999999888754 48999999999 77777655 56666543
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=6.9 Score=37.60 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=91.3
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
.++....+..|.+.|..+.+.+....--. ....++++ ++.+..+.. ++++.+.|..+.+..........+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---- 162 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---- 162 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc----
Confidence 45555567999999988877776664322 55666666 655555544 688889998877777664443322
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE-E----EecCCcEEEEEECCCC-EEEEEe-CC--CeEEEEeCCC
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG-R----IFSKHEVRVIEIGPDK-LFFTGD-GA--GMLGVWKLLA 391 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~-~----~~~~~~v~~l~~sp~~-~l~tgs-~D--g~I~vWd~~~ 391 (394)
....++|+|+.++++-..++.|.+.|........ . +........+.++|++ ++.... .+ +.+...|..+
T Consensus 163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 2334699999666766789999999977665552 1 2224456788999999 333332 22 5777766654
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=0.39 Score=50.47 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 276 ~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
..+.+.+.-+..++.|+..|.+-..|.+..-.. ..........+. +.+|+.+|. +++.|-.+|.|.+||+..++..
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vt--svafn~dg~-~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVT--SVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcce--eeEecCCCc-eeccccCCCcEEEEEccCCcce
Confidence 345555555778999999999999998653111 111111112222 345788998 8888999999999999998877
Q ss_pred EEEec-CCc---EEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 356 GRIFS-KHE---VRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 356 ~~~~~-~~~---v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
..+.. .++ |..+.+..++ .++++..-|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 76654 333 4445555555 7888888776 5654
No 377
>PHA02790 Kelch-like protein; Provisional
Probab=93.17 E-value=5.9 Score=39.38 Aligned_cols=142 Identities=8% Similarity=-0.013 Sum_probs=67.6
Q ss_pred ecCCeEEEEeCC--CeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCCC---cEEEEEeCCCceeeEeeccc
Q 016134 243 VGRSRLCSGSMD--NTIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLDH---TIKVWFATGRGNLEAAYTHK 315 (394)
Q Consensus 243 ~~~~~l~sgs~D--g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~ 315 (394)
.++.+.+.|+.+ .++..||..+.+ .+..+.........+.+.+...+.|+.++ .+..||.++.+-.. .....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~ 395 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTY 395 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCC
Confidence 445556666653 357888876543 22222211122233344467777777543 46678876543211 11111
Q ss_pred CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee--EEEecCCcEEEEEECCCCEEEEEeCC-----CeEEEEe
Q 016134 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER--GRIFSKHEVRVIEIGPDKLFFTGDGA-----GMLGVWK 388 (394)
Q Consensus 316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~v~~l~~sp~~~l~tgs~D-----g~I~vWd 388 (394)
.+....+.. .-+++ +.+.|+ .+.+||..+.+-. ..+.....-.+++...+.+++.|+.+ ..|..||
T Consensus 396 ~~r~~~~~~---~~~~~-IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCAL---VFGRR-LFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEE---EECCE-EEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 111111111 22455 666663 5778988765332 22222111223333323366777654 3577888
Q ss_pred CCCC
Q 016134 389 LLAK 392 (394)
Q Consensus 389 ~~~~ 392 (394)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 7654
No 378
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.02 E-value=2 Score=41.89 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEec-CCcEEEEEECC
Q 016134 295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFS-KHEVRVIEIGP 371 (394)
Q Consensus 295 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~-~~~v~~l~~sp 371 (394)
..+.++|+..++...... ...... ...|+|||+.++++...|+. |.++|+....... +.. ...-..=.|+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~----~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNG----APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccC----CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC
Confidence 458899998776554443 222122 33469999988888888876 4555776665333 443 22233667999
Q ss_pred CC--EEEEEeCCCeEEEEeCCCC
Q 016134 372 DK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 372 ~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
|| ++++.+..|.-.||-++.+
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~ 314 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLE 314 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCC
Confidence 99 6667777777666655443
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.99 E-value=6.8 Score=35.45 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=77.6
Q ss_pred CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC---
Q 016134 246 SRLCSGSMDNTIRVWELDTL-----EPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED--- 317 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--- 317 (394)
...+......+|.||..... +..+++. -...+.++.|.++.|+.+..+ ...+.|+.++............
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~ 182 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSF 182 (275)
T ss_pred ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchh
Confidence 34444455568999887542 4556655 457889999998888888765 4788999865543332211111
Q ss_pred ------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE--EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134 318 ------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG--RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL 389 (394)
Q Consensus 318 ------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~ 389 (394)
.....+ .--++++ +|++- |..-.+.|. .|+... .+.=...+.++++... +|+.-.. +.|.||++
T Consensus 183 ~~~~~~~~~~~~--~~~~~~e-~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~-~~iEV~~~ 254 (275)
T PF00780_consen 183 KSRNSSSKPLGI--FQLSDNE-FLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSSP-YLIAFSS-NSIEVRSL 254 (275)
T ss_pred hhcccCCCceEE--EEeCCce-EEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEEECC-EEEEECC-CEEEEEEC
Confidence 111111 1123445 66643 333333444 343322 2222556777777544 5555555 55999998
Q ss_pred CCC
Q 016134 390 LAK 392 (394)
Q Consensus 390 ~~~ 392 (394)
.+.
T Consensus 255 ~~~ 257 (275)
T PF00780_consen 255 ETG 257 (275)
T ss_pred cCC
Confidence 875
No 380
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=92.70 E-value=0.02 Score=31.94 Aligned_cols=24 Identities=38% Similarity=0.949 Sum_probs=17.6
Q ss_pred CceeEEEeee-CccCC-CCCcccccc
Q 016134 36 NKVVCVYVLE-GRCNR-NPCRFAHTE 59 (394)
Q Consensus 36 ~~~~~~~~~~-~~~~~-~~~~~~h~~ 59 (394)
...+|.+|.+ |.|.+ ..|+|.|.+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 3568999999 99999 889999963
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=1.7 Score=42.48 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=80.3
Q ss_pred CCCCEEEEEeCCCc-e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEE
Q 016134 184 LRSDKLFSGSRDGT-A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVW 260 (394)
Q Consensus 184 ~~~~~l~sgs~Dg~-v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iw 260 (394)
.+.++|+.-+.... | -|++.|+.+........|.-+.+.|+.-+ . ......-+.|-.|..|.-|
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~--------~-----Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKF--------A-----QLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcch--------h-----cccccccEEeecCCceEEe
Confidence 34455554333322 4 57778887755444444555555544110 0 0112334557778899999
Q ss_pred eCCCCc--eeEEEcCCC----CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134 261 ELDTLE--PVMTLNDHT----DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333 (394)
Q Consensus 261 d~~~~~--~~~~~~~h~----~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 333 (394)
|++-.. .+...+.|. ....|.+-. ..++++||.+|.||+||-........+.+...++.-+.+ +.+|+
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdv----tadGK- 484 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDV----TADGK- 484 (644)
T ss_pred cccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEe----eccCc-
Confidence 987422 122222232 233444444 679999999999999996332222233333333333333 67898
Q ss_pred EEEEEeCCCeEEEEECC
Q 016134 334 VLICACNDNTVHLYELP 350 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~ 350 (394)
+|++. .+..+.+.++.
T Consensus 485 wil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 WILAT-CKTYLLLIDTL 500 (644)
T ss_pred EEEEe-cccEEEEEEEe
Confidence 55533 36778777754
No 382
>PHA03098 kelch-like protein; Provisional
Probab=92.38 E-value=10 Score=38.21 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=49.5
Q ss_pred cCCeEEEEeCC------CeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCC--------CcEEEEEeCCCce
Q 016134 244 GRSRLCSGSMD------NTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLD--------HTIKVWFATGRGN 307 (394)
Q Consensus 244 ~~~~l~sgs~D------g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~D--------g~i~vwd~~~~~~ 307 (394)
.+.+++.|+.+ ..+..||+.+.+= +..+.........+...+.+++.|+.+ ..+.+||..+.+-
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 35555556532 4688899876432 111111111122233335556666542 2378888776432
Q ss_pred eeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCc
Q 016134 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFM 353 (394)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~ 353 (394)
... .....+......+ ..+++ +++.|+.+ ..|.+||..+.+
T Consensus 469 ~~~-~~~~~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 469 TEL-SSLNFPRINASLC---IFNNK-IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred eeC-CCCCcccccceEE---EECCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence 211 1111111111111 12555 66777654 468888887653
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=92.34 E-value=9.5 Score=37.95 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=47.6
Q ss_pred EecCCeEEEEeCC---CeEEEEeCCCCcee--EEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134 242 AVGRSRLCSGSMD---NTIRVWELDTLEPV--MTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE 316 (394)
Q Consensus 242 ~~~~~~l~sgs~D---g~V~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 316 (394)
..++...+.|+.+ ..+..||.++.+=. ..+.........+.+.+...+.| |.+.+||..+++-.. ......
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m~~ 435 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL-IDDPIY 435 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeE-cCCCCC
Confidence 3445566666654 34778888764311 11111111122223335555555 356788876543221 111111
Q ss_pred CcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCC
Q 016134 317 DNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSF 352 (394)
Q Consensus 317 ~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~ 352 (394)
+....... --+++ +.+.|+.+ ..|..||..+.
T Consensus 436 ~r~~~~~~---v~~~~-IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 436 PRDNPELI---IVDNK-LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CccccEEE---EECCE-EEEECCcCCCcccceEEEEECCCC
Confidence 11111111 12566 77777654 35677777654
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.33 E-value=14 Score=37.32 Aligned_cols=150 Identities=14% Similarity=0.121 Sum_probs=89.0
Q ss_pred EecCCeEEEEeCCCeEEEEeCCCCceeEEEcC--CC--CCcE-EEEEcCCEEEEEeC------CCcEEEEEeCCCceeeE
Q 016134 242 AVGRSRLCSGSMDNTIRVWELDTLEPVMTLND--HT--DAPM-SLLCWDQFLLSCSL------DHTIKVWFATGRGNLEA 310 (394)
Q Consensus 242 ~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~--~~v~-~l~~~~~~l~s~s~------Dg~i~vwd~~~~~~~~~ 310 (394)
++.++.++.++.|+.|.-.|.++++.+-.... +. ..+. +-...+..++.+.. ++.|.-+|+++++.+-.
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 44567788888999999999999998876542 11 1111 12223555666543 68899999998877655
Q ss_pred eecccCCc---------------------------c-eEEEEeeECCCCCcEEEEEe-C----CC-----------eEEE
Q 016134 311 AYTHKEDN---------------------------G-VLALGGLNDPDGKPVLICAC-N----DN-----------TVHL 346 (394)
Q Consensus 311 ~~~~~~~~---------------------------~-~~~~~~~~s~~g~~~l~sgs-~----dg-----------~I~i 346 (394)
+....... . .+-....++++.. +|..+. + ++ .|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 44322110 0 0000123466555 444333 1 12 6777
Q ss_pred EECCCCceeEEEec-CCc---------EEEEEECCCC----EEEEEeCCCeEEEEeCCCC
Q 016134 347 YELPSFMERGRIFS-KHE---------VRVIEIGPDK----LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 347 wd~~~~~~~~~~~~-~~~---------v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~~ 392 (394)
.|+++++.+-.+.. .+. ..-+.+..+| .++.+..+|.+.+.|-.+.
T Consensus 276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 88999988776654 221 2223332344 6778889999988887653
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.32 E-value=4.7 Score=38.90 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=91.0
Q ss_pred eEEEEEcCCC---ceEEEEecc---cC----CCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcEEEecC----
Q 016134 154 FLHSWFCGEG---LTMLAKLEG---HE----KAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAEFSLDG---- 211 (394)
Q Consensus 154 ~i~iWd~~~~---~~~~~~l~~---h~----~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~~~~~~---- 211 (394)
.|+|.|+.+. .++.++++. +. ..-..+---|+|+.++|+=.|.. +.|-++-+......
T Consensus 99 rIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~ 178 (461)
T PF05694_consen 99 RIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG 178 (461)
T ss_dssp -EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T
T ss_pred cEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC
Confidence 7999998633 255555543 21 11122223468888888744333 35555444432111
Q ss_pred CCCcEEEEEEcCC--EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCcEEEEEc---
Q 016134 212 PVGEVYSMVVANE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT--DAPMSLLCW--- 284 (394)
Q Consensus 212 ~~~~v~~l~~~~~--~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~~~--- 284 (394)
...--+..-+.|. .+++..+.. ...+ .--|+...+..+....++.+||+.+.+.++++.--. ..+..|.|.
T Consensus 179 ~~~~gYDfw~qpr~nvMiSSeWg~-P~~~-~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P 256 (461)
T PF05694_consen 179 PQPFGYDFWYQPRHNVMISSEWGA-PSMF-EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP 256 (461)
T ss_dssp T------EEEETTTTEEEE-B----HHHH-TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST
T ss_pred CCCCCCCeEEcCCCCEEEEeccCC-hhhc-ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC
Confidence 1122334444443 333322210 0000 000112223334456799999999999999987533 235567776
Q ss_pred --CCEEEEEeCCCcEEEEEe-CCCc----eeeEeecccC------C-------cceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134 285 --DQFLLSCSLDHTIKVWFA-TGRG----NLEAAYTHKE------D-------NGVLALGGLNDPDGKPVLICACNDNTV 344 (394)
Q Consensus 285 --~~~l~s~s~Dg~i~vwd~-~~~~----~~~~~~~~~~------~-------~~~~~~~~~~s~~g~~~l~sgs~dg~I 344 (394)
..-++.+....+|..|-- ..++ .+..+...+. . ...+...+..|.|.+.+.++.-.+|.|
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv 336 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV 336 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence 123444555566666644 2221 1111111100 0 012233344588999677778889999
Q ss_pred EEEECCCC---ceeEEEecC-----------------CcEEEEEECCCC--EEEEEe
Q 016134 345 HLYELPSF---MERGRIFSK-----------------HEVRVIEIGPDK--LFFTGD 379 (394)
Q Consensus 345 ~iwd~~~~---~~~~~~~~~-----------------~~v~~l~~sp~~--~l~tgs 379 (394)
+.||+... ++..++... +...-|..|-|| +.+|.|
T Consensus 337 rqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 337 RQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999875 334443321 124667788888 444443
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.22 E-value=9.7 Score=35.37 Aligned_cols=208 Identities=14% Similarity=0.080 Sum_probs=106.9
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCCCcEE-EecC-----CCCcEEEEEEcCC-EE
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEF-SLDG-----PVGEVYSMVVANE-ML 226 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~-~~~~-----~~~~v~~l~~~~~-~l 226 (394)
.|+-|+..++...... +.+.+.++..-..+..|+++.....+++.+++... .+.. .....+.+...++ .+
T Consensus 48 ~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~ 124 (307)
T COG3386 48 RIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI 124 (307)
T ss_pred eEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence 6777877655332222 23344555554455667776666667888666552 2111 1112222333333 22
Q ss_pred EEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeC
Q 016134 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFAT 303 (394)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~ 303 (394)
..+....+. ..... .-.-|.|..+|. .+..++.+..+-...+.|+|+ ++.|+.+.. .+.|.-|++.
T Consensus 125 wfgt~~~~~-----~~~~~-----~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 125 WFGDMGYFD-----LGKSE-----ERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEeCCCccc-----cCccc-----cCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 222111100 00000 001133444444 456666666666667889998 656665544 4778878765
Q ss_pred C--C----ceeeEeecc-cCCcceEEEEeeECCCCCcEEEEEeCCC-eEEEEECCCCceeEEEecC-CcEEEEEECCC-C
Q 016134 304 G--R----GNLEAAYTH-KEDNGVLALGGLNDPDGKPVLICACNDN-TVHLYELPSFMERGRIFSK-HEVRVIEIGPD-K 373 (394)
Q Consensus 304 ~--~----~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~-~~v~~l~~sp~-~ 373 (394)
. . ......... .....-+++ +.+|. +.+++..+| .|.+|+.. ++++..+... ..+++++|--. .
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~v----DadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAV----DADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEE----eCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence 2 1 111111111 111222333 67787 443444443 89999998 8888888775 67888888764 2
Q ss_pred --EEEEEeCC
Q 016134 374 --LFFTGDGA 381 (394)
Q Consensus 374 --~l~tgs~D 381 (394)
+++|+...
T Consensus 268 ~~L~iTs~~~ 277 (307)
T COG3386 268 NTLYITSARS 277 (307)
T ss_pred CEEEEEecCC
Confidence 55565554
No 387
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.06 E-value=5.7 Score=40.94 Aligned_cols=102 Identities=13% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCEEEEEeCCCcEEEEEeCC-------C----ce------eeEeecccCCcceEEEEeeEC--CCCCcEEEEEeCCCeEE
Q 016134 285 DQFLLSCSLDHTIKVWFATG-------R----GN------LEAAYTHKEDNGVLALGGLND--PDGKPVLICACNDNTVH 345 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd~~~-------~----~~------~~~~~~~~~~~~~~~~~~~~s--~~g~~~l~sgs~dg~I~ 345 (394)
...|+.|..||.|.+|.++. . .. +...........+. .+.++ .... +||+++....|.
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaW--GLdIh~~~~~r-lIAVSsNs~~VT 190 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAW--GLDIHDYKKSR-LIAVSSNSQEVT 190 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCcee--EEEEEecCcce-EEEEecCCceEE
Confidence 46889999999999996521 0 00 00011111112333 33333 4444 889888888888
Q ss_pred EEECCCCce----eEEEecCCcEEEEEECCCC-------EEEEEeCCCeEEEEeC
Q 016134 346 LYELPSFME----RGRIFSKHEVRVIEIGPDK-------LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 346 iwd~~~~~~----~~~~~~~~~v~~l~~sp~~-------~l~tgs~Dg~I~vWd~ 389 (394)
||-...... .....+.+.|.+|+|-++. .|++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 886554211 1122347789999998743 6888999999999887
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.99 E-value=8.9 Score=38.28 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=82.3
Q ss_pred CCEEEEEec-CCeE-EEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCC-
Q 016134 236 RPVTCLAVG-RSRL-CSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATG- 304 (394)
Q Consensus 236 ~~V~~l~~~-~~~l-~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~- 304 (394)
.+|..++|. |+.+ ++.- ..|.+++=| .+.+..| ..|..+.|. -..|++......|.||.+--
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 467778885 5443 3321 233333322 1233333 346777776 12566667788999998752
Q ss_pred ----Cceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEecCCcEEEEEECCCC--EE
Q 016134 305 ----RGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIFSKHEVRVIEIGPDK--LF 375 (394)
Q Consensus 305 ----~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~sp~~--~l 375 (394)
.+.+. ......+...++..-+.|+|... +|++-.....-.+++++... ....+...+-|.|.+|.+|| ++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 11111 11122223334444455899887 77666555544566665443 33445557789999999999 44
Q ss_pred EEEeCCCeEEEEeCC
Q 016134 376 FTGDGAGMLGVWKLL 390 (394)
Q Consensus 376 ~tgs~Dg~I~vWd~~ 390 (394)
++.+..=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 444444456788743
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.98 E-value=2.2 Score=41.08 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=71.3
Q ss_pred CeEEEEeCCCCceeEEEcCCCC-C--cEEEEEc--CCEEEEEe--------------------CCCcEEEEEeCCCceee
Q 016134 255 NTIRVWELDTLEPVMTLNDHTD-A--PMSLLCW--DQFLLSCS--------------------LDHTIKVWFATGRGNLE 309 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~~~h~~-~--v~~l~~~--~~~l~s~s--------------------~Dg~i~vwd~~~~~~~~ 309 (394)
|-+.++|-++.+.....+.... . -+.+.+. .+.++|.. ...+|.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4577778777777666654222 1 2233333 45566543 24689999999999888
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC-CCCc----eeEEEec------------------CCcEEE
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL-PSFM----ERGRIFS------------------KHEVRV 366 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~-~~~~----~~~~~~~------------------~~~v~~ 366 (394)
.+.-..+....+.+.....|+...=++.+....+|..|-- ..++ .+..+.. ..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 8876655445556666667777655555555566655544 4432 2233322 123789
Q ss_pred EEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134 367 IEIGPDK--LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 367 l~~sp~~--~l~tgs~Dg~I~vWd~~~~ 392 (394)
|.+|.|. +.+++=.+|.|+.||++..
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 9999998 5666668999999999864
No 390
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=10 Score=34.56 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL--NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT 313 (394)
Q Consensus 236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 313 (394)
.-+..+.+++++.+.+..+.-++|.|+.+...-..+ -.-.+.-..+..+|++...+..|.-+.+.|+.+.......-.
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 445667788899999989999999999875432211 112244567777799999998777788999987654433222
Q ss_pred ccCCcc---eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 314 HKEDNG---VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 314 ~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
...... -..+ .|+ +...+..|+-+.|-|+........+.+ ...+.++..+++. +++... .-+.+
T Consensus 167 ya~~~~d~~~v~I------SGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 167 YALPGGDTHDVAI------SGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred eccCCCCceeEEE------ecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence 211111 2222 244 555567889999999987755444433 4478999999887 444432 23444
Q ss_pred EeCCC
Q 016134 387 WKLLA 391 (394)
Q Consensus 387 Wd~~~ 391 (394)
-|.+.
T Consensus 238 vd~s~ 242 (370)
T COG5276 238 VDVSG 242 (370)
T ss_pred EecCC
Confidence 44443
No 391
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.44 E-value=14 Score=35.70 Aligned_cols=238 Identities=11% Similarity=0.024 Sum_probs=120.3
Q ss_pred ceeeeccccccccccCCC-eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---------
Q 016134 128 TSKKTTLKNVCCHWLLGN-CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--------- 197 (394)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~-~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--------- 197 (394)
.+..+. ++|++.++|-+ ...|+....|++.|+.++..+...+..-. -..+.|.++++.|+-...+..
T Consensus 125 ~~~~~~-~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFS-VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEE-ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred Eeeeee-ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 444556 89999998865 55666777899999999833333333221 223999999888776654441
Q ss_pred ----eeecCCCcE---EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE-EeC--C-CeEEEEeCCC
Q 016134 198 ----AWNIESSAE---FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS-GSM--D-NTIRVWELDT 264 (394)
Q Consensus 198 ----vWd~~~~~~---~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s-gs~--D-g~V~iwd~~~ 264 (394)
.|.+.+... +.+.... .......+..+ +++|+. ... + ..+.+.|+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~--------------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPD--------------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TT--------------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cEEEEEECCCChHhCeeEEeecC--------------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 244433321 1111111 11113344444 455443 222 2 3577888876
Q ss_pred C----ceeEEEcCCCCCc-EEEEEcCCEEEE-Ee---CCCcEEEEEeCCCce--ee-EeecccCCcceEEEEeeECCCCC
Q 016134 265 L----EPVMTLNDHTDAP-MSLLCWDQFLLS-CS---LDHTIKVWFATGRGN--LE-AAYTHKEDNGVLALGGLNDPDGK 332 (394)
Q Consensus 265 ~----~~~~~~~~h~~~v-~~l~~~~~~l~s-~s---~Dg~i~vwd~~~~~~--~~-~~~~~~~~~~~~~~~~~~s~~g~ 332 (394)
. .....+......+ ..+...+..|+. .. ..+.|...++..... .. .+..+........+ ...+.
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~----~~~~~ 337 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV----SLFKD 337 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE----EEETT
T ss_pred cCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE----EEECC
Confidence 4 2333333333333 445455654433 32 245677777776653 22 33333332233332 22344
Q ss_pred cEEEEEeCCC--eEEEEECCCCceeEEEec--CCcEEEEEECCCC---EEEEEeC--CCeEEEEeCCCC
Q 016134 333 PVLICACNDN--TVHLYELPSFMERGRIFS--KHEVRVIEIGPDK---LFFTGDG--AGMLGVWKLLAK 392 (394)
Q Consensus 333 ~~l~sgs~dg--~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~---~l~tgs~--Dg~I~vWd~~~~ 392 (394)
.+++.-..++ .|+++++..+.....+.. ...|..+...++. +|...+. -.++..||+.+.
T Consensus 338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 4666665554 578889884444444444 4446666655655 3333433 345666676654
No 392
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.32 E-value=14 Score=35.32 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=84.1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CCE--EEEEe-CC---CcEEEEEeCCC-ceeeEe
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQF--LLSCS-LD---HTIKVWFATGR-GNLEAA 311 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~~--l~s~s-~D---g~i~vwd~~~~-~~~~~~ 311 (394)
..+++....++-+.+||+. ++.++.+.. +.+..+..- ++. |+.++ .+ .+|++|-+... ..+..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 3577778888999999997 677777752 344444332 332 34443 32 57999988632 233332
Q ss_pred ecc-----cCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECC---CC----ceeEEEecCCcEEEEEECCCC-EEEE
Q 016134 312 YTH-----KEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELP---SF----MERGRIFSKHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 312 ~~~-----~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~---~~----~~~~~~~~~~~v~~l~~sp~~-~l~t 377 (394)
... ........+|..-++ +|..+++....+|.+..|.+. .+ +++.++.....+..+...... .|+.
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Confidence 211 111224455544454 566677778889999888775 22 345556557789999888776 9999
Q ss_pred EeCCCeEEEEeCCC
Q 016134 378 GDGAGMLGVWKLLA 391 (394)
Q Consensus 378 gs~Dg~I~vWd~~~ 391 (394)
+-++--|.-|+.+.
T Consensus 225 gEE~~GIW~y~Aep 238 (381)
T PF02333_consen 225 GEEDVGIWRYDAEP 238 (381)
T ss_dssp EETTTEEEEEESSC
T ss_pred ecCccEEEEEecCC
Confidence 99997777766654
No 393
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.29 E-value=3.5 Score=40.25 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=79.6
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
+..|.....+.-.|++.|+.+.++..|...+ +.|. ...-+.|-.+..|.-.|.+-..............
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4456666677778888899999888776653 3333 1223344455666666765433111111111111
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
+...+...-..... ++|.++..|-|++||.-.-.....++. ...|..+..+.+| .|+|| ...+.+-|+.
T Consensus 561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 11111111122333 899999999999999655444444444 6779999999999 44444 3456666654
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.23 E-value=6 Score=34.78 Aligned_cols=139 Identities=9% Similarity=0.048 Sum_probs=76.5
Q ss_pred ccccccccCCCeecCCC-----CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEE-eCCCce--ee--cCCC
Q 016134 135 KNVCCHWLLGNCVRGDE-----CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSG-SRDGTA--WN--IESS 204 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~-----~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~v--Wd--~~~~ 204 (394)
..|.++|.+....+-.. -+.++.|-.....+.+. ..-.--+.|+|+.+.+.++-- +.+-+| || .++|
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEeccCCCceeee---hhccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 56777775544333221 12445554433322222 122233567888776665543 444445 66 5555
Q ss_pred cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134 205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW 284 (394)
Q Consensus 205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~ 284 (394)
..... ..|..+.-+. ..+.....=.+|.-++++.++.-..++|...|..+++.+.+++-....|++++|-
T Consensus 193 ~~snr----~~i~dlrk~~------~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 193 DLSNR----KVIFDLRKSQ------PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cccCc----ceeEEeccCC------CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 43210 0111111100 0001111112333347888888888999999999999999999899999999998
Q ss_pred CC
Q 016134 285 DQ 286 (394)
Q Consensus 285 ~~ 286 (394)
|+
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 54
No 395
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.14 E-value=1.2 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEE
Q 016134 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEI 369 (394)
Q Consensus 329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~ 369 (394)
|+++.++++.-.+++|.++|..+++.+..+........+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 46665666666789999999999888877766555555554
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.79 E-value=0.71 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.0
Q ss_pred EeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134 324 GGLNDPDGKPVLICACNDNTVHLYELPSFME 354 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~ 354 (394)
...|+|... +||.+..+|.|.||.+ +++.
T Consensus 16 ~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 16 CMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred EEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 345799998 9999999999999999 4443
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.56 E-value=12 Score=34.84 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=66.2
Q ss_pred EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC-ceeecCCCc-EEEecCCCCcEEEEEEcCCEEEEEecCC
Q 016134 156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-TAWNIESSA-EFSLDGPVGEVYSMVVANEMLFAGAQDG 233 (394)
Q Consensus 156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-~vWd~~~~~-~~~~~~~~~~v~~l~~~~~~l~~~~~~~ 233 (394)
.+|-+......++.+..|-..-+.|+||||++.|+.+.... .||...-.. ...... ....+.+ +.
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~---~~~~~~~----------~~ 210 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG---RRGFVDF----------DE 210 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC---cceEEEc----------cC
Confidence 34444322355666667667778899999998888776653 353332211 000000 0000000 01
Q ss_pred CCCCEEEEEec--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEcC
Q 016134 234 HTRPVTCLAVG--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCWD 285 (394)
Q Consensus 234 h~~~V~~l~~~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 285 (394)
..+..-.++.+ +++.+++-.+| .|.+|+.+ ++++..++.....+++++|-+
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 12222233444 45554444444 99999998 999999887778889999874
No 398
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=20 Score=34.43 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=87.7
Q ss_pred CCeEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEeCCCceee-E----eec
Q 016134 245 RSRLCSGSM---DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC-SLDHTIKVWFATGRGNLE-A----AYT 313 (394)
Q Consensus 245 ~~~l~sgs~---Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~----~~~ 313 (394)
++.++.+.. ++++.+.|..+.+.+.+...-..+ ..+++. ++.++.+ ..++.|.+.|........ . ...
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~ 205 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV 205 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence 545554444 789999999998888875543334 777777 6655544 478999999976544332 0 111
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEE-ecCC-cEEEEEECCCC-EEEEE-eCCCeEEEE
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRI-FSKH-EVRVIEIGPDK-LFFTG-DGAGMLGVW 387 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~-~~~~-~v~~l~~sp~~-~l~tg-s~Dg~I~vW 387 (394)
... .... .+++++..+.++-..+ +.+.+.|..++...... .... ....+...|++ .+... +..+.+.+-
T Consensus 206 ~~~-P~~i----~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 206 GTG-PAGI----AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred CCC-CceE----EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence 111 1222 3589998555544333 68999999988766652 2222 56778999999 44444 344677776
Q ss_pred eCCC
Q 016134 388 KLLA 391 (394)
Q Consensus 388 d~~~ 391 (394)
|..+
T Consensus 281 d~~~ 284 (381)
T COG3391 281 DGAT 284 (381)
T ss_pred eCCC
Confidence 6554
No 399
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.60 E-value=35 Score=37.19 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=80.1
Q ss_pred CCeEEEEeCCC-----Cce-----eEEE--cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEe-CCCceeeEeecccCCcce
Q 016134 254 DNTIRVWELDT-----LEP-----VMTL--NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFA-TGRGNLEAAYTHKEDNGV 320 (394)
Q Consensus 254 Dg~V~iwd~~~-----~~~-----~~~~--~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~~~~~~ 320 (394)
-|.+.|+|+-. +++ ++.+ +...++|..++--..+|+++. ..+|.+|++ +....+-.-. ...+..+
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaF-iD~~~yv 1141 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAF-IDLPLYV 1141 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEE-eccceeE
Confidence 47899999732 222 2222 346678888776655666654 358999999 4443333222 2222222
Q ss_pred EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134 321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~ 392 (394)
..+ ..-.+ +|+.|.--..|.+......-....+.. .-.+.++.|--|| .++.+..|+.|+++-...+
T Consensus 1142 ~s~----~~vkn-lIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1142 HSM----KVVKN-LILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred Eeh----hhhhh-heehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 222 11233 666676667777776665433333333 3358899998887 8999999999999976654
No 400
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.43 E-value=2.1 Score=37.66 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=43.8
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceeEEE---------------ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 328 DPDGKPVLICACNDNTVHLYELPSFMERGRI---------------FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 328 s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---------------~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
...+. +|++-+.+|.+++||+.+.+.+..- .....|..+.++.+| -|++- .+|....|+.+
T Consensus 19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 34566 7888889999999999988654432 123568999999889 44444 45778888764
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.37 E-value=15 Score=32.49 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC---EEEEEeC
Q 016134 328 DPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK---LFFTGDG 380 (394)
Q Consensus 328 s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~---~l~tgs~ 380 (394)
+.+|. +.++.-..++|...|..+++.+.++.. ...|++++|--.+ +.+|+..
T Consensus 220 D~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 220 DTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 55787 777777789999999999999988877 5679999998764 4445443
No 402
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.09 E-value=10 Score=30.31 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=36.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCC----CEEEEEeCCCeEEEEeC
Q 016134 334 VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD----KLFFTGDGAGMLGVWKL 389 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~----~~l~tgs~Dg~I~vWd~ 389 (394)
.|+.|+ ...|..||+.....+......+.|+++.+..- .-++..+.+..|.-||.
T Consensus 66 ~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 66 CLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred EEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 677666 56899999998877766666778888877431 24444445555655554
No 403
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.73 E-value=17 Score=37.19 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred cceeeeccccccccccCCCee--cCCCC--CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134 127 STSKKTTLKNVCCHWLLGNCV--RGDEC--RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD 195 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~~~--~g~~~--~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D 195 (394)
..+.+.+ .++++..++.... ++..+ ..|.+++.... ......+. ..+.-.|+|+|+.|++.+..
T Consensus 350 ~~vsspa-iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g~--~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAA-LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEGH--SLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred cCcccce-ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecCC--CCCCceECCCCCceEEEecC
Confidence 4566666 8888888764432 22223 34555555333 22223333 38889999999988887643
No 404
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=88.24 E-value=0.3 Score=45.23 Aligned_cols=26 Identities=38% Similarity=0.798 Sum_probs=22.9
Q ss_pred CCCceeEEEeeeCccCC-CCCcccccc
Q 016134 34 PTNKVVCVYVLEGRCNR-NPCRFAHTE 59 (394)
Q Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~h~~ 59 (394)
..+..||+||++|.|.. -.|.|+|..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 56778999999999987 899999964
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.90 E-value=38 Score=35.50 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCc-eeecCC--CcEEEecCCCCcEEEEEEcCC-EEEEEecCCCCCCEEEEEec-----C
Q 016134 175 KAVSGIALPLRSDKLFSGSRDGT-AWNIES--SAEFSLDGPVGEVYSMVVANE-MLFAGAQDGHTRPVTCLAVG-----R 245 (394)
Q Consensus 175 ~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~--~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~~h~~~V~~l~~~-----~ 245 (394)
-.|..|.++|+|++|+-.|..+. |-.+.. +..-.+.+....+.|-.+.-+ .++. ..+...|..+.|+ +
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~---~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT---SNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc---CCCCceEEEEEEcCCCCCC
Confidence 46888999999999999998886 222211 111112222223333333222 2221 1456788999997 4
Q ss_pred CeEEEEeCCCeEEEEeCCC
Q 016134 246 SRLCSGSMDNTIRVWELDT 264 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~ 264 (394)
..|+.=..|+++|+||+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CeEEEEecCCEEEEEecCC
Confidence 6788888999999999965
No 406
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.76 E-value=13 Score=37.89 Aligned_cols=58 Identities=5% Similarity=-0.073 Sum_probs=33.1
Q ss_pred eeECCCCCcEEEEEeCC------------CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134 325 GLNDPDGKPVLICACND------------NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 325 ~~~s~~g~~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
..|+|+|. .|++.... +.+.+.++..++... .....|..+.|+||| .|+... +++|.+
T Consensus 402 PsWspDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 402 PSWSLDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ceECCCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 34689977 45544322 233333444333322 224579999999999 555544 466665
No 407
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.52 E-value=25 Score=32.96 Aligned_cols=206 Identities=14% Similarity=0.074 Sum_probs=101.9
Q ss_pred CCCCCeEEEEEcCCCceEEEEeccc---C----CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEE
Q 016134 149 GDECRFLHSWFCGEGLTMLAKLEGH---E----KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVY 217 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~~l~~h---~----~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~ 217 (394)
|...-.|.+||..+- .+..++.-- . .....++++.|+++++..-..-. |-|++.++.+......+-..
T Consensus 63 G~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 63 GERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL 141 (342)
T ss_dssp EEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred ccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE
Confidence 344447999999875 555433221 1 12234577788888776654443 67777776653322222111
Q ss_pred EEEE--------cCC-EEEEEecC--CCCC------------CEE-EEEec--CCeEEEEeCCCeEEEEeCCCCce--eE
Q 016134 218 SMVV--------ANE-MLFAGAQD--GHTR------------PVT-CLAVG--RSRLCSGSMDNTIRVWELDTLEP--VM 269 (394)
Q Consensus 218 ~l~~--------~~~-~l~~~~~~--~h~~------------~V~-~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~--~~ 269 (394)
-.-. +.| .+++...+ ++.. ++. .-++. +..++--+.+|.|+--|+...+. ..
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~ 221 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK 221 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence 1111 122 22222222 2111 110 11111 23455567888888888865432 22
Q ss_pred EEcCCC----------CCcEEEEEc--CCEEEEEe---C-----C--CcEEEEEeCCCceeeEeecccCCcceEEEEeeE
Q 016134 270 TLNDHT----------DAPMSLLCW--DQFLLSCS---L-----D--HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN 327 (394)
Q Consensus 270 ~~~~h~----------~~v~~l~~~--~~~l~s~s---~-----D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (394)
.+..-+ +.-.-++++ .+.|.+-- . | ..|-++|+.+.+.+..+.... +...+.+
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~V---- 296 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAV---- 296 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEE----
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEE----
Confidence 222110 112224444 33333321 1 1 147777888888877776432 2333443
Q ss_pred CCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec
Q 016134 328 DPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS 360 (394)
Q Consensus 328 s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 360 (394)
+.+.+++|++.+ .++.|.+||..+++.+..+..
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 567777776654 579999999999999888876
No 408
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=87.09 E-value=22 Score=31.89 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCcEEEEEc-CCEEEEEe-CCCcEEEEEeCCCc
Q 016134 233 GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDH-TDAPMSLLCW-DQFLLSCS-LDHTIKVWFATGRG 306 (394)
Q Consensus 233 ~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~-~~~l~s~s-~Dg~i~vwd~~~~~ 306 (394)
+-...+..|+|+ +.++++....+.|..++.+ ++.++.+.-. .+..-.|++. +..++... .++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 444568888886 3367777778889888874 7877776533 3557788888 44555555 48899999984322
Q ss_pred e---e---eEee-ccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC---CceeEEEec---------CCcEE
Q 016134 307 N---L---EAAY-THK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS---FMERGRIFS---------KHEVR 365 (394)
Q Consensus 307 ~---~---~~~~-~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~---------~~~v~ 365 (394)
. . ..+. ... .....-.+ +|++.++.++ .+-+..-..||.+.. ......... ...+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGl--a~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGL--AYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEE--EEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred cccchhhceEEecccccCCCcceEEE--EEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 1 1 1111 111 11112222 3578777444 456666677777654 212111111 23588
Q ss_pred EEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 366 VIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 366 ~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
+++++|.. +++.+..+..|..+|.+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 99999975 77777788888777743
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=86.31 E-value=26 Score=35.92 Aligned_cols=98 Identities=10% Similarity=0.143 Sum_probs=58.8
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeC-----C----CceeeEeec
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW----DQFLLSCSLDHTIKVWFAT-----G----RGNLEAAYT 313 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~-----~----~~~~~~~~~ 313 (394)
.++-+....+.|||.+.+....+.. ...+.|.++.|. ++.+++.+....|.++--. + ...++.+..
T Consensus 44 a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i 123 (631)
T PF12234_consen 44 AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDI 123 (631)
T ss_pred EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence 3333445589999999877554432 356889999997 7888888999999998431 1 112222221
Q ss_pred cc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 314 HK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 314 ~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
.. .++.+- ...|-++|. +++ |+ .+.+.|+|-.
T Consensus 124 ~~~T~h~Ig--ds~Wl~~G~-LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 124 SSHTPHPIG--DSIWLKDGT-LVV-GS-GNQLFVFDKW 156 (631)
T ss_pred ecCCCCCcc--ceeEecCCe-EEE-Ee-CCEEEEECCC
Confidence 11 111222 223577886 444 33 4679998754
No 410
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.18 E-value=0.067 Score=51.30 Aligned_cols=133 Identities=10% Similarity=0.072 Sum_probs=88.8
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
+.-++.++.+..|..||-. ++....+. .++....++|+ +..++.+-..+.+.+||+.+....+.-.+.......
T Consensus 46 ~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl- 122 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL- 122 (615)
T ss_pred CCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence 3347777888899999954 44443333 44556677776 345556667889999999764332222222221111
Q ss_pred EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCCEEEEEeCCCeE
Q 016134 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDKLFFTGDGAGML 384 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~~l~tgs~Dg~I 384 (394)
..|++... .++.+...+.+.|++..+.+...... +...++++++.+.++.+.++.|..+
T Consensus 123 ---l~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 123 ---LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred ---HhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence 23577776 77778889999999988876665554 4667999999999977777776544
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.44 E-value=3.3 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.5
Q ss_pred cEEEEEECCCC----EEEEEeCCCeEEEEeCCC
Q 016134 363 EVRVIEIGPDK----LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 363 ~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~ 391 (394)
.|+++.|+|+. +|+.+-.-+.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999743 888888889999999974
No 412
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.17 E-value=36 Score=32.54 Aligned_cols=146 Identities=11% Similarity=0.043 Sum_probs=71.5
Q ss_pred CCe-EEEEeCCC--eEEEEeCCCCceeEEEcCCCC-C-cEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134 245 RSR-LCSGSMDN--TIRVWELDTLEPVMTLNDHTD-A-PMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319 (394)
Q Consensus 245 ~~~-l~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~-~-v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 319 (394)
++. |+.+..|+ .+.+.|+.+++..+--.+... . -..++...+.++-......|+-.|+.+.+..........-..
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 444 45555455 566668888776554332211 1 122222255665555567888889988765443333332222
Q ss_pred eEEEEeeECCCCCcEEEEEe---C-------------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EE
Q 016134 320 VLALGGLNDPDGKPVLICAC---N-------------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LF 375 (394)
Q Consensus 320 ~~~~~~~~s~~g~~~l~sgs---~-------------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l 375 (394)
... +..+.++. .++-.- . ...|.-.|+.+++....+.....+..+.|+|.. +|
T Consensus 127 ~gt--~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 127 YGT--WVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLI 203 (386)
T ss_dssp EEE--EEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEE
T ss_pred ccc--eeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEE
Confidence 111 12255666 333211 1 224666788888777666668889999999987 55
Q ss_pred EEEeC---CCe-EEEEeCCCCC
Q 016134 376 FTGDG---AGM-LGVWKLLAKP 393 (394)
Q Consensus 376 ~tgs~---Dg~-I~vWd~~~~~ 393 (394)
+.|-+ |.. -|||-+++.+
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETTS
T ss_pred EEeccCCcceeceEEEEEEcCC
Confidence 55432 221 3677766553
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.10 E-value=22 Score=37.54 Aligned_cols=112 Identities=8% Similarity=-0.001 Sum_probs=69.3
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--------cEEEEEc------------------CCEEEEEeCCCcEE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA--------PMSLLCW------------------DQFLLSCSLDHTIK 298 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~--------v~~l~~~------------------~~~l~s~s~Dg~i~ 298 (394)
++.|+.++.++.|.-.|.++++.+-++...... ...+.+. +..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 667788888899999999999988776532211 1112222 34788888999999
Q ss_pred EEEeCCCceeeEeeccc----------CCcceEEEEeeECC--CCCcEEEEEeC----------CCeEEEEECCCCceeE
Q 016134 299 VWFATGRGNLEAAYTHK----------EDNGVLALGGLNDP--DGKPVLICACN----------DNTVHLYELPSFMERG 356 (394)
Q Consensus 299 vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~--~g~~~l~sgs~----------dg~I~iwd~~~~~~~~ 356 (394)
-.|.++++.+..+.... ......... -.| .+. .++.|+. +|.|+-+|+++++++-
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~t--s~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPT--SPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccc--cCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999988775542210 000000000 011 122 4555532 6889999999998887
Q ss_pred EEe
Q 016134 357 RIF 359 (394)
Q Consensus 357 ~~~ 359 (394)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 664
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.22 E-value=8.4 Score=33.85 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=45.0
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE-------c-------CCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL-------N-------DHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~-------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw 300 (394)
++..+...+++|++-+.+|.+++||+.+++++..- . .....|..+... |.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 55556777899999999999999999987764322 1 133455556555 44455444 4677888
Q ss_pred EeCC
Q 016134 301 FATG 304 (394)
Q Consensus 301 d~~~ 304 (394)
|...
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 7643
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=83.69 E-value=67 Score=34.40 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=75.0
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 333 (394)
..||+++-. ..+..+....+.....++. ...++.++.++.+...++.... +.....+.....+.|+....-++++.
T Consensus 470 ~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 457777654 2334444332222222222 4466667777777777777655 34444444445556655433344544
Q ss_pred ---EEEEEeCCCeEEEEE-CCCCceeEEEec-----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 334 ---VLICACNDNTVHLYE-LPSFMERGRIFS-----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 334 ---~l~sgs~dg~I~iwd-~~~~~~~~~~~~-----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
+++.|..+..+.+.- .++...+..... ...|.-..+-.|. +|.++..||.+.-|-++
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 888888776655443 444433333222 3345556666656 99999999998776554
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.42 E-value=30 Score=30.15 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=60.6
Q ss_pred CcEEEEEcC-CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---C---eEEEEE-
Q 016134 277 APMSLLCWD-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---N---TVHLYE- 348 (394)
Q Consensus 277 ~v~~l~~~~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g---~I~iwd- 348 (394)
....+...+ +.|+.+.....|.+|++.+.+. ..+.....-..+.. ..++..|+ +|++--.+ . .+|+|-
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~-~~~~~F~Tv~~V~~--l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~N 94 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEEC-PLLCTFSTVGRVLQ--LVYSEAGD-YLVTLEEKNKRSPVDFVRAYFN 94 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCC-ceeEEEcchhheeE--EEeccccc-eEEEEEeecCCccceEEEEEEE
Confidence 445555555 6666656678899999983222 22222222233333 34677888 78775332 2 566651
Q ss_pred --CC--CC-----------------------ceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134 349 --LP--SF-----------------------MERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 349 --~~--~~-----------------------~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~ 390 (394)
.. .. ..+.+++....+.+++..|-. .|+.|+. +.+.+|.+.
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~ 163 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLK 163 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence 11 00 112223335567888888864 6666655 468888764
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.21 E-value=41 Score=30.87 Aligned_cols=180 Identities=9% Similarity=0.006 Sum_probs=99.8
Q ss_pred EEecccC-CCeEEEEecCCCCEEEEEeCCCc---eeecCC---CcEEEecCCCCcEEEEEEcCCEEEEEecC--------
Q 016134 168 AKLEGHE-KAVSGIALPLRSDKLFSGSRDGT---AWNIES---SAEFSLDGPVGEVYSMVVANEMLFAGAQD-------- 232 (394)
Q Consensus 168 ~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~---~~~~~~~~~~~~v~~l~~~~~~l~~~~~~-------- 232 (394)
..+.+|- +.|..+.....-.++..| .+-. +|+... ...+......+-+..+.++.+..+.+-.+
T Consensus 35 ~~~vghfg~~vsavdv~~~ya~v~qG-~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDI 113 (370)
T COG5276 35 YAYVGHFGKGVSAVDVRGAYAYVGQG-FILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDI 113 (370)
T ss_pred eEEeeeccCCcccccccccccccccC-ceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEec
Confidence 4455665 555555553322222111 1111 465542 12233333444566667776655544433
Q ss_pred ------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcE
Q 016134 233 ------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTI 297 (394)
Q Consensus 233 ------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i 297 (394)
.-.+.-.++..+|+++..+..|.-..+.|+.+.+ +..........-..++.+|++-..+..|+-+
T Consensus 114 S~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL 193 (370)
T COG5276 114 STPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGL 193 (370)
T ss_pred cCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCe
Confidence 1113345566678998888866667788886533 3444454555567888899999999999999
Q ss_pred EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353 (394)
Q Consensus 298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~ 353 (394)
.+-|+.+......+............ ..+++.. +++.. +--+.+-|....+
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv--~vsdnr~-y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSV--SVSDNRA-YLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEE--EecCCee-EEEEc--ccceEEEecCCCC
Confidence 99999876554433322222233333 2355543 44433 3346666776654
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.13 E-value=24 Score=34.79 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=52.7
Q ss_pred CeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134 246 SRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 318 (394)
..-++|-.+..|.--|.+- +..+...+ ....++.-.|+ ..+++.++..|-|++||--.-.....+......+
T Consensus 528 eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI 606 (776)
T COG5167 528 EQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI 606 (776)
T ss_pred cceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccce
Confidence 3445566677777677654 22222111 12222222232 6799999999999999954322222222222222
Q ss_pred ceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
.-+. .+.+|+.+|+++ ...|-+-|++
T Consensus 607 k~id----vta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 607 KHID----VTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred eeeE----eecCCcEEEEee--cceEEEEecc
Confidence 2233 267888555544 4677777765
No 419
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.71 E-value=45 Score=31.03 Aligned_cols=107 Identities=8% Similarity=0.014 Sum_probs=48.8
Q ss_pred ecCCeEEEEeCC-----CeEEEEeCCCCce---eEEEcCCC---CCcEEEEEcCCEEEEEeC-----CCcEEEEEeCCCc
Q 016134 243 VGRSRLCSGSMD-----NTIRVWELDTLEP---VMTLNDHT---DAPMSLLCWDQFLLSCSL-----DHTIKVWFATGRG 306 (394)
Q Consensus 243 ~~~~~l~sgs~D-----g~V~iwd~~~~~~---~~~~~~h~---~~v~~l~~~~~~l~s~s~-----Dg~i~vwd~~~~~ 306 (394)
+.+.+++.|+.+ ..+..||+.+.+- ...+..-. .......+.+.+.+.|+. ...+..||+.+.+
T Consensus 71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 344555555543 3566777766442 12221111 111222333566666664 2457788877543
Q ss_pred eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCc
Q 016134 307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFM 353 (394)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~ 353 (394)
-.. +.............. ..+++ +.+.|+.++ .+.+||..+.+
T Consensus 151 W~~-~~~~p~~~r~~~~~~--~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFE-LPDFPGEPRVQPVCV--KLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeE-CCCCCCCCCCcceEE--EECCE-EEEEcCCCCccccceEEEecCCCe
Confidence 221 111111011111111 22455 777777653 35688887654
No 420
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.47 E-value=39 Score=37.13 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=81.3
Q ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----C------CEEEEEeCCCcEEEEEeCCCcee---eEeec----c
Q 016134 252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----D------QFLLSCSLDHTIKVWFATGRGNL---EAAYT----H 314 (394)
Q Consensus 252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----~------~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~----~ 314 (394)
+-|+.+.+|+.+++.....+.+-...|..|... | ++++..+.--.|.++-+.-.+.. ..+.. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999977777777766777777654 1 34444444455666654322111 11111 1
Q ss_pred cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC----CCC---c--------------e---eEEEe--cCCcEEEEE
Q 016134 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL----PSF---M--------------E---RGRIF--SKHEVRVIE 368 (394)
Q Consensus 315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~----~~~---~--------------~---~~~~~--~~~~v~~l~ 368 (394)
.....+.++ ....+|+ ++++| .|| .||.+ .++ + . +..++ ...+|..++
T Consensus 176 ~dg~~V~~I--~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCI--TYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cCCceEEEE--EeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 223334433 3567887 66654 566 44432 111 0 0 11112 145799999
Q ss_pred ECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134 369 IGPDK-LFFTGDGAGMLGVWKLLAKP 393 (394)
Q Consensus 369 ~sp~~-~l~tgs~Dg~I~vWd~~~~~ 393 (394)
+.... .+.+-++.+.|.+|++...+
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCCC
Confidence 98877 89999999999999998754
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.63 E-value=69 Score=31.87 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=67.3
Q ss_pred eEEEEEcCCCceEEEEeccc---------------------CCCeEEEEecCCCCEEEEEeCCCc-eeecC--CCcEEEe
Q 016134 154 FLHSWFCGEGLTMLAKLEGH---------------------EKAVSGIALPLRSDKLFSGSRDGT-AWNIE--SSAEFSL 209 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h---------------------~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~--~~~~~~~ 209 (394)
-+..||.+...-.+..+++. .-.|..+..++.|..++-++.+|. |-.+. -|..-.+
T Consensus 62 ~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~ 141 (741)
T KOG4460|consen 62 ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF 141 (741)
T ss_pred EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee
Confidence 67788876654444444421 234777888999999999999997 22220 0111122
Q ss_pred cCCCCcEEEEEEcCC-EEEEEecCCCCCCEEEEEec-----CCeEEEEeCCCeEEEEeCCCCceeE
Q 016134 210 DGPVGEVYSMVVANE-MLFAGAQDGHTRPVTCLAVG-----RSRLCSGSMDNTIRVWELDTLEPVM 269 (394)
Q Consensus 210 ~~~~~~v~~l~~~~~-~l~~~~~~~h~~~V~~l~~~-----~~~l~sgs~Dg~V~iwd~~~~~~~~ 269 (394)
......|.|-.+.-+ .+++.+ ..-.+...+|+ ...|..-+.|..|||||+.....+.
T Consensus 142 eDgk~~v~CRt~~i~~~~ftss---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 142 EDGKSTVNCRTTPVAERFFTSS---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred cCCCceEEEEeecccceeeccC---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 223334555555444 444432 23355666776 3457777889999999997655443
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.57 E-value=47 Score=34.85 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=25.9
Q ss_pred CcEEEEEECCCC----EEEEEeCCCeEEEEeCCC
Q 016134 362 HEVRVIEIGPDK----LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 362 ~~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~ 391 (394)
..|..+.|+|.+ .|+.-..|+++|+||+..
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 358999999974 888888999999999964
No 423
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=79.42 E-value=87 Score=32.95 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=41.9
Q ss_pred CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCcEEEEEcCCEEEEE-eCCCcEEEEEeCCCc
Q 016134 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND---HTDAPMSLLCWDQFLLSC-SLDHTIKVWFATGRG 306 (394)
Q Consensus 236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~l~s~-s~Dg~i~vwd~~~~~ 306 (394)
.+|..+++..+.+ -++.+|.|.|+...+......+.. |...|+++.+.+.-+..+ .....+++++..+-.
T Consensus 627 lPvrsla~~ed~~-was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 627 LPVRSLAFQEDFV-WASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLW 700 (925)
T ss_pred ccccchhhhhcee-eeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccC
Confidence 3455555544443 456789999999887666555544 456788888885433333 233356666554433
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.93 E-value=7.7 Score=41.62 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=74.5
Q ss_pred EEEEeCCCeEEEEeCCCCcee-----EEEcCC------CCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134 248 LCSGSMDNTIRVWELDTLEPV-----MTLNDH------TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT 313 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~-----~~~~~h------~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 313 (394)
++..+.+-.|..||+++.... .-|..| ..-..++.|. ....+.+..|+.|++..+........
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~--- 193 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT--- 193 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc---
Confidence 334445558889999764321 112212 1233455555 45677788899999987654322211
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-----CCcEEEEEECCCC
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-----KHEVRVIEIGPDK 373 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~~ 373 (394)
..+......+++|+|.|+ .++.|-..|++.-|... .+....+.. ...|.+|.|....
T Consensus 194 -s~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 194 -SFPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred -ccCcccceeeEEeccccc-eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 123445556667899999 88889999999988654 333333333 3569999998776
No 425
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=78.13 E-value=66 Score=30.82 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=33.7
Q ss_pred eECCCCCcEEEEEeCCC----------------eEEEEECCCCceeEEEecC-----------CcEEEEEECCCC--EEE
Q 016134 326 LNDPDGKPVLICACNDN----------------TVHLYELPSFMERGRIFSK-----------HEVRVIEIGPDK--LFF 376 (394)
Q Consensus 326 ~~s~~g~~~l~sgs~dg----------------~I~iwd~~~~~~~~~~~~~-----------~~v~~l~~sp~~--~l~ 376 (394)
..++||+ +++--+.|. .|+++++..+.......+. ..=....|+||+ .|+
T Consensus 289 ~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF 367 (386)
T PF14583_consen 289 MSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF 367 (386)
T ss_dssp EE-TTSS-EEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred EEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence 3478988 665434332 5667888776543222220 012457899999 888
Q ss_pred EEeCCCeEEEEeCCC
Q 016134 377 TGDGAGMLGVWKLLA 391 (394)
Q Consensus 377 tgs~Dg~I~vWd~~~ 391 (394)
++...|...||-++-
T Consensus 368 ~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 368 RSDMEGPPAVYLVEI 382 (386)
T ss_dssp EE-TTSS-EEEEEE-
T ss_pred ECCCCCCccEEEEeC
Confidence 888889887776543
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=78.10 E-value=1e+02 Score=33.06 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=66.5
Q ss_pred CCCEEEEE-ecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeE
Q 016134 235 TRPVTCLA-VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEA 310 (394)
Q Consensus 235 ~~~V~~l~-~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~ 310 (394)
.+.+.++. |++.++|. -...|++|++.+.+.++.-..+..++..+... ++.++.|..-+.+.+...+..+- ...
T Consensus 829 ~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 829 KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 34455544 34555554 45789999998887776666677888877776 99999999888888877665442 222
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~ 350 (394)
....-.+....+.. +- +.. .++.+..+|.+.+-...
T Consensus 907 vArD~~p~Wmtave--il-~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVE--IL-DDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eehhhCccceeeEE--Ee-cCc-eEEeecccccEEEEEec
Confidence 21111122222221 12 333 34556667777776544
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.67 E-value=60 Score=30.09 Aligned_cols=145 Identities=13% Similarity=0.012 Sum_probs=68.1
Q ss_pred CCEEEEEec--CCeEEEEeCCCeEEEEeCCC--CceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134 236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEA 310 (394)
Q Consensus 236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~--~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~ 310 (394)
..+..+... +.++++++.-....-||.-. .++.. ..-...|.+|.|. +..|......+.|++=+... ....
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~~~~ 220 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD--DGET 220 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT--EEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEeCCcEEEEccCCC--Cccc
Confidence 445555543 45566655544555676532 22222 2245788999998 44555556888888776221 2222
Q ss_pred eecccCC---cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCe
Q 016134 311 AYTHKED---NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGM 383 (394)
Q Consensus 311 ~~~~~~~---~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~ 383 (394)
+.....+ ...-.+.+.|.++++ +.++|+ .|.+ +.....++.-..... ...++.|.|.++..-+.-+.+|.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 2221111 111123445777777 666665 4433 345666665555543 45688888887666666668888
Q ss_pred EEEE
Q 016134 384 LGVW 387 (394)
Q Consensus 384 I~vW 387 (394)
|.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 428
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=76.80 E-value=56 Score=29.31 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=78.4
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----CC--EEEEEeC--CCcEEEEEeCCCc-eeeEeeccc-
Q 016134 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----DQ--FLLSCSL--DHTIKVWFATGRG-NLEAAYTHK- 315 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~--~l~s~s~--Dg~i~vwd~~~~~-~~~~~~~~~- 315 (394)
..+++.-..+-++|||+. ++.++.+..-.-.-..+.+. |+ -|+.+|. ...|.+|-+.-.. .+..+....
T Consensus 68 S~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n~ 146 (364)
T COG4247 68 SLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSNA 146 (364)
T ss_pred ceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCCC
Confidence 467777778889999996 66676665322222233322 33 2444442 4578888775432 222222211
Q ss_pred ----CCcceEEEEeeECCC-CCcEEEEEeCCCeEEEEECCCC-------ceeEEEecCCcEEEEEECC-CCEEEEEeCCC
Q 016134 316 ----EDNGVLALGGLNDPD-GKPVLICACNDNTVHLYELPSF-------MERGRIFSKHEVRVIEIGP-DKLFFTGDGAG 382 (394)
Q Consensus 316 ----~~~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~~~~v~~l~~sp-~~~l~tgs~Dg 382 (394)
.......++...+|. |..++++...+|.|.-|.+-.. +.+..+.....-..+.... .|.|..+-+|
T Consensus 147 p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd- 225 (364)
T COG4247 147 PYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED- 225 (364)
T ss_pred ccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeecc-
Confidence 112334445445665 6656677777898888876432 2333333322222222222 2367777666
Q ss_pred eEEEEeCCCCCC
Q 016134 383 MLGVWKLLAKPS 394 (394)
Q Consensus 383 ~I~vWd~~~~~~ 394 (394)
+-||.+..+|+
T Consensus 226 -vaiWK~~Aep~ 236 (364)
T COG4247 226 -VAIWKYEAEPN 236 (364)
T ss_pred -ceeeecccCCC
Confidence 67898877653
No 429
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.36 E-value=9.6 Score=21.63 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMT 270 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~ 270 (394)
+..++.++.++.+..+|.++++.+.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 44677788888888888888877654
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.60 E-value=51 Score=32.73 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=25.2
Q ss_pred cEEEEEECCCC----EEEEEeCCCeEEEEeCCCC
Q 016134 363 EVRVIEIGPDK----LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 363 ~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~~ 392 (394)
.+..++|+|+. .|..-+.|..||+|++...
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 37778999986 7888889999999998764
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.13 E-value=78 Score=30.15 Aligned_cols=121 Identities=10% Similarity=-0.033 Sum_probs=54.9
Q ss_pred eEEEEeCCC--Cc--eeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCc----eeeEeec-ccCC---cceEE
Q 016134 256 TIRVWELDT--LE--PVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRG----NLEAAYT-HKED---NGVLA 322 (394)
Q Consensus 256 ~V~iwd~~~--~~--~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~----~~~~~~~-~~~~---~~~~~ 322 (394)
.|.+++-.. ++ ....+.........+++. +. |+++......++.|..... ....+.. .... .....
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~ 126 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSL 126 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccc
Confidence 676665432 32 223343334456778876 44 5455554433344543211 1111211 1111 01111
Q ss_pred EEeeECCCCCcEEEEEeC------------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134 323 LGGLNDPDGKPVLICACN------------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT 377 (394)
Q Consensus 323 ~~~~~s~~g~~~l~sgs~------------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t 377 (394)
..+.+.|||..++..++. .+.|.-++....+.......-.....++|+++| ++++
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 123468999833433421 134555555544332211123346789999999 5444
No 432
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.73 E-value=84 Score=30.32 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=51.8
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC-----------cEEEEEeCCCcee-eEeecccCCcce
Q 016134 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH-----------TIKVWFATGRGNL-EAAYTHKEDNGV 320 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg-----------~i~vwd~~~~~~~-~~~~~~~~~~~~ 320 (394)
..|+++|+++++.+...-.. .....+.|. ++.|+....+. .|+.|.+.+.... ..+........
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~- 227 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF- 227 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT-
T ss_pred EEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc-
Confidence 35999999999876532111 122347787 45555444322 3777777665433 22222222222
Q ss_pred EEEEeeECCCCCcEEEEEeCC---CeEEEEECCCC
Q 016134 321 LALGGLNDPDGKPVLICACND---NTVHLYELPSF 352 (394)
Q Consensus 321 ~~~~~~~s~~g~~~l~sgs~d---g~I~iwd~~~~ 352 (394)
..+.+..+++++.+++..... ..+.+.++...
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 122334689999656555443 45888888874
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.55 E-value=38 Score=32.91 Aligned_cols=83 Identities=4% Similarity=-0.119 Sum_probs=49.9
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC----------------CCcEEE
Q 016134 275 TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD----------------GKPVLI 336 (394)
Q Consensus 275 ~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------------g~~~l~ 336 (394)
...+.++..+ +.+.++...=|+|.|+|+.....++.+++..+... .+....... ...+++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc--~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQC--GWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceE--EEEEeecccccccccccccCCCCcceEEEEE
Confidence 3445666666 56777766678999999998877776665433211 111111111 111344
Q ss_pred EEeCCCeEEEEECCCCceeEEEe
Q 016134 337 CACNDNTVHLYELPSFMERGRIF 359 (394)
Q Consensus 337 sgs~dg~I~iwd~~~~~~~~~~~ 359 (394)
-+-.-|.|.||.++.+..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 45667889999998887766554
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.27 E-value=67 Score=33.44 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCeEEEEeCCCeEEEEeCCC-------C-------------ceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEE
Q 016134 245 RSRLCSGSMDNTIRVWELDT-------L-------------EPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVW 300 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vw 300 (394)
.+.|+.+..||.|.+|.+++ . ++...+. ....++.++++ ..+||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 46799999999999997632 1 1122222 23467888887 4577777777778887
Q ss_pred EeCCC-ceeeEeecccCCcceEEEEeeEC---CCCCcEEEEEeCCCeEEEEEC
Q 016134 301 FATGR-GNLEAAYTHKEDNGVLALGGLND---PDGKPVLICACNDNTVHLYEL 349 (394)
Q Consensus 301 d~~~~-~~~~~~~~~~~~~~~~~~~~~~s---~~g~~~l~sgs~dg~I~iwd~ 349 (394)
-.... +.......+...+.+.+++..-+ ++|...|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65442 11111112222233333332222 223236778888999999888
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.10 E-value=68 Score=29.00 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCEEEEEe-c-CCeEEEEeCCC--eEEEEeCCCCceeEEEcCCCC-CcEEEEEcCCEE-EEEeCCCcEEEEEeCCCceee
Q 016134 236 RPVTCLAV-G-RSRLCSGSMDN--TIRVWELDTLEPVMTLNDHTD-APMSLLCWDQFL-LSCSLDHTIKVWFATGRGNLE 309 (394)
Q Consensus 236 ~~V~~l~~-~-~~~l~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~l-~s~s~Dg~i~vwd~~~~~~~~ 309 (394)
.....+.| + +.++-+.+.-| .|+.+|+.+++.+....-... ---.+...++.| .-.-.++...+||..+-+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 34456777 4 45566666655 799999999997766543222 223444454443 444568899999998877776
Q ss_pred EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134 310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF 359 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 359 (394)
.+... ....-++ .+++.++++- -...|+++|..+.+....+.
T Consensus 125 ~~~y~-~EGWGLt------~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 125 TFPYP-GEGWGLT------SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEE-S-SS--EEE------ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE
T ss_pred EEecC-CcceEEE------cCCCEEEEEC-CccceEEECCcccceEEEEE
Confidence 66443 2223332 3566455544 46689999999887766654
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.21 E-value=21 Score=36.16 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.6
Q ss_pred CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 285 DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
..+|++.+.|++||+||+.+++++...
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 578999999999999999998885554
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.54 E-value=25 Score=35.56 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134 331 GKPVLICACNDNTVHLYELPSFMERGRI 358 (394)
Q Consensus 331 g~~~l~sgs~dg~I~iwd~~~~~~~~~~ 358 (394)
++.+|++.+.|+++|+||+.+++.+...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3348999999999999999999885543
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.89 E-value=33 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.5
Q ss_pred cEEEEEECCCC-------EEEEEeCCCeEEEEeCC
Q 016134 363 EVRVIEIGPDK-------LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 363 ~v~~l~~sp~~-------~l~tgs~Dg~I~vWd~~ 390 (394)
.|..++|||.| +|++...++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68999999954 89999999999999754
No 439
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.14 E-value=11 Score=20.94 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.1
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEE
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVW 260 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iw 260 (394)
.|.+++...++++.+..-+.+|||
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 467777778888888888888887
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=70.81 E-value=23 Score=22.15 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=20.7
Q ss_pred CEEEEEec---C--CeEEEEeCCCeEEEEeCCC
Q 016134 237 PVTCLAVG---R--SRLCSGSMDNTIRVWELDT 264 (394)
Q Consensus 237 ~V~~l~~~---~--~~l~sgs~Dg~V~iwd~~~ 264 (394)
.|.++.|+ + ++|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 45666776 1 5677777788999999985
No 441
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=69.74 E-value=45 Score=33.39 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred CCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134 234 HTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT-DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEA 310 (394)
Q Consensus 234 h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~ 310 (394)
....|..+.++ .+.+..|+.|| +..||..+++.++.-.... .+|..+..+ ...|..|..+| +.+.+.+..+....
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcccccc
Confidence 34567777777 67788888888 5567887777665544333 566666655 66777777666 67777655222111
Q ss_pred eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEE
Q 016134 311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGV 386 (394)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~v 386 (394)
..... ...+..+ .-+.+|. +-.|++.|..+ +..+.......... -..|.++.-..+|-|.+++.++.+++
T Consensus 241 ~~~lp-~~~I~ll--~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~ 314 (671)
T COG3292 241 GPMLP-SGNILLL--VQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRY 314 (671)
T ss_pred CCCCc-chheeee--ecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEE
Confidence 11111 1112211 1133444 44466555443 33443322222211 33466676666778888888776654
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=69.05 E-value=0.65 Score=48.05 Aligned_cols=141 Identities=15% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEe-----------cCCCCEEEEEeCCCce--eecC-CCc----EEEe-
Q 016134 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-----------PLRSDKLFSGSRDGTA--WNIE-SSA----EFSL- 209 (394)
Q Consensus 149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~-----------s~~~~~l~sgs~Dg~v--Wd~~-~~~----~~~~- 209 (394)
+..++.|++........ ..+.+|...+++++| +|||+.|+.+..||.+ |.+. +++ ++..
T Consensus 201 ~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred ccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 45556788777655422 455678877777654 7888889988888883 3322 111 1111
Q ss_pred cCCC-CcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEe-CCCeEEEEeCCCCceeE--------EEcCCCCCc
Q 016134 210 DGPV-GEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGS-MDNTIRVWELDTLEPVM--------TLNDHTDAP 278 (394)
Q Consensus 210 ~~~~-~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs-~Dg~V~iwd~~~~~~~~--------~~~~h~~~v 278 (394)
..|. .+-.|.. .|...+..+... -.++++++ ....+++|.-...+|+. ....|...|
T Consensus 279 kphd~~p~vC~l------------c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v 346 (1283)
T KOG1916|consen 279 KPHDKHPRVCWL------------CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEV 346 (1283)
T ss_pred CCCCCCCceeee------------eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccc
Confidence 1111 1111111 122222111111 12344444 45679999887777652 112344444
Q ss_pred EEEEEc---CCEEEEEeCCCcEEEEEeC
Q 016134 279 MSLLCW---DQFLLSCSLDHTIKVWFAT 303 (394)
Q Consensus 279 ~~l~~~---~~~l~s~s~Dg~i~vwd~~ 303 (394)
+.+... -..+++-+.|+.|++|.-+
T Consensus 347 ~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 347 TDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 433221 2235556778899999544
No 443
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=68.88 E-value=4 Score=37.08 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=25.6
Q ss_pred CCCceeEEEeeeCccCC-CCCccccccCCCc
Q 016134 34 PTNKVVCVYVLEGRCNR-NPCRFAHTESSSL 63 (394)
Q Consensus 34 ~~~~~~~~~~~~~~~~~-~~~~~~h~~~p~~ 63 (394)
.....+|+||.+|+|+. +.|.|+|..-+..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCccc
Confidence 34678999999999998 9999999876655
No 444
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=68.57 E-value=1.2e+02 Score=29.50 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=32.7
Q ss_pred eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES 203 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~ 203 (394)
.|+||+.... ++..+.--.+.|.++.|+.+ ..|+....||. ++|+..
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 6999987654 34444333389999999875 55667778888 577753
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.36 E-value=1.6e+02 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CEEEEEec-CCeEEEEeCCCeEEEEeCC
Q 016134 237 PVTCLAVG-RSRLCSGSMDNTIRVWELD 263 (394)
Q Consensus 237 ~V~~l~~~-~~~l~sgs~Dg~V~iwd~~ 263 (394)
.+..+.|+ ...|++...||+++||++-
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc
Confidence 67778888 5678889999999999985
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.32 E-value=89 Score=28.63 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=52.2
Q ss_pred CeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CC-EEEEEe------CCCcEEEEEeCCCceeeEeeccc---CCcceEEE
Q 016134 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQ-FLLSCS------LDHTIKVWFATGRGNLEAAYTHK---EDNGVLAL 323 (394)
Q Consensus 255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~s------~Dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~ 323 (394)
..|++||..+.+=..--.+-.+.|+++.|. ++ +++.|. ....+..||+.+.. ...+.... -+..+.++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 468999987654333333456789999987 44 444443 35578889987643 22222211 11222232
Q ss_pred EeeECCCCCcEEEEEe-C--CCeEEEEECCCCceeE
Q 016134 324 GGLNDPDGKPVLICAC-N--DNTVHLYELPSFMERG 356 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs-~--dg~I~iwd~~~~~~~~ 356 (394)
... ..++..+.+.|. . +..|..||-.+...+.
T Consensus 95 ~~~-~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 95 TFI-SNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred Eee-ccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 221 344443555543 2 3346667655544443
No 447
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=67.67 E-value=1.5e+02 Score=30.16 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=70.1
Q ss_pred CCCCEEEEEecC------CeEEEEeCCCeEEEEeCC-----CCceeEEEcCCC---CC--cEEEEEc--CCEEEEEeCCC
Q 016134 234 HTRPVTCLAVGR------SRLCSGSMDNTIRVWELD-----TLEPVMTLNDHT---DA--PMSLLCW--DQFLLSCSLDH 295 (394)
Q Consensus 234 h~~~V~~l~~~~------~~l~sgs~Dg~V~iwd~~-----~~~~~~~~~~h~---~~--v~~l~~~--~~~l~s~s~Dg 295 (394)
.-..|..+.|.+ -.|+..-..+.|.||.+. +.+.+.....+- -+ ...+.|+ ...|+.-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 334556666641 124444556889999885 233322222111 11 1334555 23343333333
Q ss_pred cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee----EE-EecCCcEEEEEEC
Q 016134 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER----GR-IFSKHEVRVIEIG 370 (394)
Q Consensus 296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~----~~-~~~~~~v~~l~~s 370 (394)
.-.+++++.......... + ......+.+|.+||++++++.+..=.-+|||-...... .. +.-...|.++.-.
T Consensus 135 vSV~~sV~~d~srVkaDi-~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT 211 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-K--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT 211 (671)
T ss_pred eeEeeeeeeCCceEEEec-c--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence 334566654433222221 1 22233456789999977766666556788886543211 11 1225567776655
Q ss_pred CCCEEEEEe
Q 016134 371 PDKLFFTGD 379 (394)
Q Consensus 371 p~~~l~tgs 379 (394)
-|..+|.+.
T Consensus 212 ~dsqVAvaT 220 (671)
T PF15390_consen 212 VDSQVAVAT 220 (671)
T ss_pred ccceEEEEe
Confidence 555555443
No 448
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.27 E-value=15 Score=22.09 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=15.4
Q ss_pred EEEcCCEEEEEeCCCcEEEEEeC
Q 016134 281 LLCWDQFLLSCSLDHTIKVWFAT 303 (394)
Q Consensus 281 l~~~~~~l~s~s~Dg~i~vwd~~ 303 (394)
+...+..++.++.|+.|..+|.+
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT
T ss_pred CEEECCEEEEEcCCCEEEEEeCC
Confidence 35557777778888888877764
No 449
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.21 E-value=17 Score=21.76 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.6
Q ss_pred eEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134 247 RLCSGSMDNTIRVWELDTLEPVMTLN 272 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~ 272 (394)
.++.++.||.|.-.|.++|+.+-.++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45566788888888888888777665
No 450
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=67.17 E-value=95 Score=27.84 Aligned_cols=106 Identities=16% Similarity=0.059 Sum_probs=54.3
Q ss_pred CcEEEEEc--CCEEEEEe-CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE-CCCC
Q 016134 277 APMSLLCW--DQFLLSCS-LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE-LPSF 352 (394)
Q Consensus 277 ~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd-~~~~ 352 (394)
.+.+.+.+ ++.++... .++.-.||-...+.......... ... ...|++++. +.+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~-~l~----~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG-SLT----RPSWDPDGW-VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC-ccc----cccccCCCC-EEEEEcCCCceEEEEecCCC
Confidence 45666666 66655544 23333444444444333332111 122 224688877 555555566666663 3333
Q ss_pred cee-EEEec--C-CcEEEEEECCCC-EEEEEe---CCCeEEEEe
Q 016134 353 MER-GRIFS--K-HEVRVIEIGPDK-LFFTGD---GAGMLGVWK 388 (394)
Q Consensus 353 ~~~-~~~~~--~-~~v~~l~~sp~~-~l~tgs---~Dg~I~vWd 388 (394)
... ..+.. . ..|+.++++||| .++.-. .++.|.+=-
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 222 22222 2 289999999999 444333 456666543
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=67.05 E-value=1.2 Score=43.17 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=116.7
Q ss_pred ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecC
Q 016134 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDG 211 (394)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~ 211 (394)
|.+.+.-++-+|.+- .+..+|-... .+..+ .-++...+++|..+++.++....... +||+.+.....+..
T Consensus 42 w~~e~~nlavaca~t----iv~~YD~agq--~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 42 WRPEGHNLAVACANT----IVIYYDKAGQ--VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred EecCCCceehhhhhh----HHHhhhhhcc--eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 444444455555554 5666665432 22222 23456667888888776655443332 79987654332211
Q ss_pred CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEE
Q 016134 212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFL 288 (394)
Q Consensus 212 ~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l 288 (394)
.. .|+... +.|+ ...++.+-..+.+.|++..+.+.+...-.|...++++++. .++.
T Consensus 115 gg-------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 115 GG-------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred cC-------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee
Confidence 00 112222 3455 3456777788999999988766665555599999999998 8888
Q ss_pred EEEeCCCcEEEEEeCCCceeeEeecccCCcceE--EEE-eeECCCCCcEEEEEeCCCeEEEE--EC--CCCceeEEEec-
Q 016134 289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL--ALG-GLNDPDGKPVLICACNDNTVHLY--EL--PSFMERGRIFS- 360 (394)
Q Consensus 289 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~-~~~s~~g~~~l~sgs~dg~I~iw--d~--~~~~~~~~~~~- 360 (394)
+.++.|..+.+-...+. ..........+.... .+. -.|..-|. .+++.- .+.+.+. .+ .++..-..+..
T Consensus 174 il~dcd~~L~v~~qege-ta~ltevggepdnm~~~y~k~n~w~kage-~m~sVv-sgKkhl~yak~nE~D~pval~fq~~ 250 (615)
T KOG2247|consen 174 ILCDCDNTLSVTTQEGE-TASLTEVGGEPDNMDFFYGKVNGWGKAGE-TMVSVV-SGKKHLMYAKYNELDEPVALQFQEK 250 (615)
T ss_pred eecCcHHHHHHhhhccc-eeeeeeccCccchhhhheeeeeccccccc-eeeeee-ecHHHHHHHhhcCCCCccceEeeec
Confidence 88888877665543322 222211111111111 110 01222333 232211 1222221 11 11111112322
Q ss_pred CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 361 KHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 361 ~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
.+.+.|+.|--||+|.-+.+-+.|..-.
T Consensus 251 ~gni~cyrwylDg~i~igf~ag~iV~iS 278 (615)
T KOG2247|consen 251 YGNIHCYRWYLDGYILIGFDAGYIVSIS 278 (615)
T ss_pred CCceeEEEEeccccccccccceeEEEEe
Confidence 5668999999998777777666665544
No 452
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=66.12 E-value=1.7e+02 Score=30.33 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=78.0
Q ss_pred CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcC-CCC------CcEEEEEc--CCEEEEEeC-C---CcE
Q 016134 235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLND-HTD------APMSLLCW--DQFLLSCSL-D---HTI 297 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~-h~~------~v~~l~~~--~~~l~s~s~-D---g~i 297 (394)
...|..+.+. +..+++...+|.|.+||..... .+..++. +.. -|...... .+++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4567777776 6789999999999999993322 1112221 111 12222211 355555544 3 256
Q ss_pred EEEEe--CCCceeeEee---cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-------Cc-E
Q 016134 298 KVWFA--TGRGNLEAAY---THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-------HE-V 364 (394)
Q Consensus 298 ~vwd~--~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------~~-v 364 (394)
+++.+ .... ...+. ..........+ +|. +|..+-. .+++|.+|++...+...++.-. .. |
T Consensus 209 kL~~l~~~~~~-~~El~s~~~e~~~~~~s~f--~Y~-~G~LY~l---~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~v 281 (670)
T PF10395_consen 209 KLISLSNESSS-IFELSSTILENFGLEDSKF--CYQ-FGKLYQL---SKKTISSYSIPNFQIQKTISLPSIIDKESDDLV 281 (670)
T ss_pred EEEEeccCCcc-eEEeehheeccCCcccceE--EEe-CCEEEEE---eCCEEEEEEcCCceEEEEEEechhhccccccce
Confidence 77777 2222 22222 11111111222 233 5652222 5789999999998776665431 12 3
Q ss_pred EEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 365 RVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 365 ~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
.-.+.+++..|++. +..|.+.|+..
T Consensus 282 Sl~~~s~nRvLLs~--~nkIyLld~~~ 306 (670)
T PF10395_consen 282 SLKPPSPNRVLLSV--NNKIYLLDLKF 306 (670)
T ss_pred EeecCCCCeEEEEc--CCEEEEEeehh
Confidence 33344555444443 46788888753
No 453
>PLN02153 epithiospecifier protein
Probab=65.94 E-value=1.2e+02 Score=28.47 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=9.4
Q ss_pred CeEEEEECCCCce
Q 016134 342 NTVHLYELPSFME 354 (394)
Q Consensus 342 g~I~iwd~~~~~~ 354 (394)
..|.+||+.+.+-
T Consensus 217 ~~v~~yd~~~~~W 229 (341)
T PLN02153 217 NAVQFFDPASGKW 229 (341)
T ss_pred CceEEEEcCCCcE
Confidence 4688899887643
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=65.85 E-value=8.5 Score=40.32 Aligned_cols=57 Identities=11% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-------------CCEEEEEeCCCcEEEEEe
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-------------DQFLLSCSLDHTIKVWFA 302 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-------------~~~l~s~s~Dg~i~vwd~ 302 (394)
.-++..+-.++.|++..+.+... ..+..|...++.++|. |..|+.++.||.++.|.+
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44566677788898877654322 3344577766666553 566777777777666654
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=65.63 E-value=69 Score=25.68 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=60.6
Q ss_pred eEEEEeCCCeEEEEeCCCCc--------eeEEEcCCCCCcEEEEEc-------CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134 247 RLCSGSMDNTIRVWELDTLE--------PVMTLNDHTDAPMSLLCW-------DQFLLSCSLDHTIKVWFATGRGNLEAA 311 (394)
Q Consensus 247 ~l~sgs~Dg~V~iwd~~~~~--------~~~~~~~h~~~v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~ 311 (394)
.|+.++.-++|.|++..... .+..|. -...|++|+.- .+.|+.|+. ..|..||+.+...+...
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 57778888999999876432 334443 45677777543 356666664 67899999876443322
Q ss_pred ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134 312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355 (394)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~ 355 (394)
.. ......+.+. .+.....+++++|+ +..|.-||..-.+..
T Consensus 90 e~-~DGvn~i~~g-~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 90 EV-PDGVNAIVIG-KLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred hC-ccceeEEEEE-ecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 22 2223333332 33332333666665 567777777654443
No 456
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=65.14 E-value=2.9 Score=22.21 Aligned_cols=20 Identities=45% Similarity=1.029 Sum_probs=17.0
Q ss_pred eEEEeeeC-ccCCCCCccccc
Q 016134 39 VCVYVLEG-RCNRNPCRFAHT 58 (394)
Q Consensus 39 ~~~~~~~~-~~~~~~~~~~h~ 58 (394)
.|.|=.+| .||..-|+|-|-
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCCCCCCcccc
Confidence 47788888 999999999883
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=64.83 E-value=1.2e+02 Score=28.15 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=32.3
Q ss_pred cCCeEEEEeC-----CCeEEEEeCCCCc--eeEEEcCCC-CCcEEEEEcCCEEEEEeCCCc----EEEEEeCCCc
Q 016134 244 GRSRLCSGSM-----DNTIRVWELDTLE--PVMTLNDHT-DAPMSLLCWDQFLLSCSLDHT----IKVWFATGRG 306 (394)
Q Consensus 244 ~~~~l~sgs~-----Dg~V~iwd~~~~~--~~~~~~~h~-~~v~~l~~~~~~l~s~s~Dg~----i~vwd~~~~~ 306 (394)
.+.+.+.|+. ...+..||+++.+ .+..+.... .....+...+++.+.|+.++. +.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3445555553 2468888987643 222222111 111223344677777776542 4578877643
No 458
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=63.98 E-value=2.9 Score=21.01 Aligned_cols=16 Identities=31% Similarity=0.972 Sum_probs=12.9
Q ss_pred EEEeeeCccCCC-CCcccc
Q 016134 40 CVYVLEGRCNRN-PCRFAH 57 (394)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~h 57 (394)
|+||.. |..- -|+|.|
T Consensus 2 Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 2 CKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CcCcCC--CCCCCcCccCC
Confidence 788866 8776 899988
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=62.95 E-value=17 Score=21.64 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=17.0
Q ss_pred EeeECCCCCcEEEEEeCC--CeEEEE
Q 016134 324 GGLNDPDGKPVLICACND--NTVHLY 347 (394)
Q Consensus 324 ~~~~s~~g~~~l~sgs~d--g~I~iw 347 (394)
...|+|||+.++.++..+ |.-.||
T Consensus 13 ~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445799999777777777 776666
No 460
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.05 E-value=1.3e+02 Score=27.62 Aligned_cols=222 Identities=12% Similarity=0.034 Sum_probs=103.7
Q ss_pred eEEEEEcCCCceEEEEecccCCC-e-EEEEecCCCCEEEEEeCCCc-------eeecCCCcEE--EecCCCCcEEEEEEc
Q 016134 154 FLHSWFCGEGLTMLAKLEGHEKA-V-SGIALPLRSDKLFSGSRDGT-------AWNIESSAEF--SLDGPVGEVYSMVVA 222 (394)
Q Consensus 154 ~i~iWd~~~~~~~~~~l~~h~~~-V-~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~--~~~~~~~~v~~l~~~ 222 (394)
+-.++|..+..++ .++...++. . --=.|+|||.+|+..-.|-. |||...+-.. .+..+.-.-..|.+.
T Consensus 92 f~~vfD~~~~~~p-v~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 92 FAMVFDPNGAQEP-VTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred eEEEECCCCCcCc-EEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 4567777665333 333221111 1 11368999999997766544 6888744322 344444445556666
Q ss_pred CC-EEEEEecC---CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEc----CCCCCcEEEEEc-CCEEEEEeC
Q 016134 223 NE-MLFAGAQD---GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN----DHTDAPMSLLCW-DQFLLSCSL 293 (394)
Q Consensus 223 ~~-~l~~~~~~---~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~----~h~~~v~~l~~~-~~~l~s~s~ 293 (394)
+| .+++.... .|. .|....|=.-++.-++.+.|..+++++.+.. .+.-.|..++.. +..+..++.
T Consensus 171 ~DGrtlvvanGGIethp------dfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 171 ADGRTLVVANGGIETHP------DFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred cCCcEEEEeCCceeccc------ccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 66 22222221 221 2222223334555666677766766554322 233344444443 222222221
Q ss_pred -CCc-----EEEEEeCCCceeeEeec-------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134 294 -DHT-----IKVWFATGRGNLEAAYT-------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360 (394)
Q Consensus 294 -Dg~-----i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 360 (394)
.|. ..+=-.+.++.++.+.. ....+..++.. ..++- +.+++-..+...+||..++..+.....
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n---~~~gl-V~lTSP~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN---RRDGL-VALTSPRGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec---ccCCe-EEEecCCCCeEEEEEcCCCcEEecccc
Confidence 110 00000111222221111 11112333331 23443 666666677889999999977654432
Q ss_pred CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 361 KHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 361 ~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
-.+..++-... -++..+.+|.+.++.
T Consensus 321 -~daaGva~~~~-gf~vssg~G~~~~~s 346 (366)
T COG3490 321 -PDAAGVAAAKG-GFAVSSGQGRIIFYS 346 (366)
T ss_pred -cccccceeccC-ceEEecCCceEEecc
Confidence 12233333333 444555677777653
No 461
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.01 E-value=1.6e+02 Score=28.61 Aligned_cols=29 Identities=24% Similarity=0.601 Sum_probs=23.8
Q ss_pred cEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134 363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~ 391 (394)
.|..++..+.. .|++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 38899998887 999999999999999964
No 462
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=61.76 E-value=61 Score=31.54 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=46.1
Q ss_pred eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCc---EEEEEEC-------------CC-C--EEEEEeCCCe
Q 016134 325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHE---VRVIEIG-------------PD-K--LFFTGDGAGM 383 (394)
Q Consensus 325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~---v~~l~~s-------------p~-~--~l~tgs~Dg~ 383 (394)
.+.+|.+. +.++...=|.|.++|+..+..+...++ +.. +....-. +. . +++-.-.-|.
T Consensus 313 i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~ 391 (415)
T PF14655_consen 313 ICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGI 391 (415)
T ss_pred EEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCe
Confidence 34589988 777777779999999998876665554 111 1111111 11 1 5666778899
Q ss_pred EEEEeCCCCCC
Q 016134 384 LGVWKLLAKPS 394 (394)
Q Consensus 384 I~vWd~~~~~~ 394 (394)
|.||.++..+|
T Consensus 392 lEvW~~~~g~R 402 (415)
T PF14655_consen 392 LEVWSMRQGPR 402 (415)
T ss_pred EEEEecCCCCE
Confidence 99999988764
No 463
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.63 E-value=2.3e+02 Score=30.10 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=86.3
Q ss_pred cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc----------------E-EEEEcCCEEEEEeC----------CCc
Q 016134 244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP----------------M-SLLCWDQFLLSCSL----------DHT 296 (394)
Q Consensus 244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v----------------~-~l~~~~~~l~s~s~----------Dg~ 296 (394)
.+..++.++.|+.|.-.|.++++.+..+.. .+.| + .-...+..++.++. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 356888899999999999999998876642 1111 1 11122566777643 688
Q ss_pred EEEEEeCCCceeeEeecccC-------CcceEE-------EEeeECCCCCcEEEEEe------------------CCCeE
Q 016134 297 IKVWFATGRGNLEAAYTHKE-------DNGVLA-------LGGLNDPDGKPVLICAC------------------NDNTV 344 (394)
Q Consensus 297 i~vwd~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~s~~g~~~l~sgs------------------~dg~I 344 (394)
|+-+|+++++.+-.+..... ...... ....++++.. ++..+. ..+.|
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceE
Confidence 99999999887765543110 000000 0112344433 222211 13567
Q ss_pred EEEECCCCceeEEEec-CCc---------EEEEEECC-CC----EEEEEeCCCeEEEEeCCCC
Q 016134 345 HLYELPSFMERGRIFS-KHE---------VRVIEIGP-DK----LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 345 ~iwd~~~~~~~~~~~~-~~~---------v~~l~~sp-~~----~l~tgs~Dg~I~vWd~~~~ 392 (394)
.-.|.++++.+-.+.. .+. ..-+.+.. +| .++.++.+|.+.+.|-.+.
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 7778888887766654 221 12222322 44 7888999999999887664
No 464
>PLN02153 epithiospecifier protein
Probab=56.35 E-value=1.7e+02 Score=27.30 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=8.0
Q ss_pred eEEEEECCCCc
Q 016134 343 TVHLYELPSFM 353 (394)
Q Consensus 343 ~I~iwd~~~~~ 353 (394)
.|..||+.+..
T Consensus 277 ~v~~~d~~~~~ 287 (341)
T PLN02153 277 EGYALDTETLV 287 (341)
T ss_pred cEEEEEcCccE
Confidence 57888887654
No 465
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.79 E-value=50 Score=35.89 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=60.6
Q ss_pred EEeCCCcEEEEEeCCCceee-----Eeecc--cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE-EEecC
Q 016134 290 SCSLDHTIKVWFATGRGNLE-----AAYTH--KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG-RIFSK 361 (394)
Q Consensus 290 s~s~Dg~i~vwd~~~~~~~~-----~~~~~--~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~ 361 (394)
..+.+-.|..||+++-..-. .+..+ ........++..|+|.=....+....|+.|++..+....... .+...
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t 198 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT 198 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc
Confidence 33445578889987532111 01111 011222333444566543345556778999988776543322 23336
Q ss_pred CcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134 362 HEVRVIEIGPDK-LFFTGDGAGMLGVWKL 389 (394)
Q Consensus 362 ~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~ 389 (394)
..+++++|+|.| .++.|-..|++..|.-
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeec
Confidence 679999999999 9999999999988753
No 466
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=53.78 E-value=1.9e+02 Score=26.87 Aligned_cols=193 Identities=8% Similarity=0.040 Sum_probs=83.5
Q ss_pred ccCCCeEEEEecCCCCEEEEEeCCCceeecCCCc-EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEE
Q 016134 172 GHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSA-EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCS 250 (394)
Q Consensus 172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~-~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~s 250 (394)
.-...+.+|.|..+.+-++. +..+.|+....+- .-....... .+.-.-...+|.|.++....
T Consensus 14 ~t~~~l~dV~F~d~~~G~~V-G~~g~il~T~DGG~tW~~~~~~~----------------~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAV-GAYGTILKTTDGGKTWQPVSLDL----------------DNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEE-ETTTEEEEESSTTSS-EE---------------------S-----EEEEEEEETTEEEE
T ss_pred CCCCceEEEEEecCCEEEEE-ecCCEEEEECCCCccccccccCC----------------CccceeeEEEEEecCCceEE
Confidence 45779999999854444554 5567766654432 221100000 00001124556666444444
Q ss_pred EeCCCeEEEEeCCCCceeEEEc---CCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEe
Q 016134 251 GSMDNTIRVWELDTLEPVMTLN---DHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGG 325 (394)
Q Consensus 251 gs~Dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~ 325 (394)
++..+. .+...+.++.-..+. .-.+....+... .......+..|. ||-..++ +.-+.+.. ....... ..
T Consensus 77 vG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~-~~~gs~~--~~ 150 (302)
T PF14870_consen 77 VGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVS-ETSGSIN--DI 150 (302)
T ss_dssp EEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE--S----EE--EE
T ss_pred EcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEccc-CCcceeE--eE
Confidence 455553 333334444333322 122333444433 444444455554 4444433 23222222 1112222 23
Q ss_pred eECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134 326 LNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWK 388 (394)
Q Consensus 326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd 388 (394)
..+++|. +++++..-....-||.-.. =..........|..|.|.|++.|......|.|++=+
T Consensus 151 ~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 151 TRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp EE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred EECCCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 3588998 7777765555567775532 233333347789999999999444444777777644
No 467
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.66 E-value=3.7 Score=39.40 Aligned_cols=25 Identities=48% Similarity=0.986 Sum_probs=17.9
Q ss_pred CceeEEEeeeCccCCCCCccccccC
Q 016134 36 NKVVCVYVLEGRCNRNPCRFAHTES 60 (394)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~h~~~ 60 (394)
+..+|+||.+++|-+--|+|-|++.
T Consensus 31 n~t~C~~w~~~~~C~k~C~YRHSe~ 55 (667)
T KOG4791|consen 31 NETVCTLWQEGRCCRKVCRYRHSEI 55 (667)
T ss_pred CcchhhhhhhcCcccccccchhhHH
Confidence 5567777777777777777777653
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=52.87 E-value=47 Score=19.73 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=22.7
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283 (394)
Q Consensus 248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~ 283 (394)
+++.-.+++|.++|..+++.+..+... .....+.+
T Consensus 7 yv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 7 YVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 344445789999999888887777652 33344443
No 469
>PRK10115 protease 2; Provisional
Probab=52.41 E-value=3e+02 Score=28.87 Aligned_cols=65 Identities=6% Similarity=-0.181 Sum_probs=42.8
Q ss_pred cceeeeccccccccccCCC-eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134 127 STSKKTTLKNVCCHWLLGN-CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD 195 (394)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~-~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D 195 (394)
-.+..+. ++|++.+++-+ ..+|+..-.|++-|+.++..+...+.+ .. ..++|.+|++.|+-...+
T Consensus 127 ~~l~~~~-~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 127 YTLGGMA-ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEEeEEE-ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEec
Confidence 3566666 89999988754 455666778999999877322222222 12 569999998877655543
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=51.84 E-value=1.2e+02 Score=26.47 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=33.3
Q ss_pred eCCCeEEEEECC--CCceeEEEecCCcEEEEEECCCC-EEEEEeCC
Q 016134 339 CNDNTVHLYELP--SFMERGRIFSKHEVRVIEIGPDK-LFFTGDGA 381 (394)
Q Consensus 339 s~dg~I~iwd~~--~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~D 381 (394)
...+.|.+|++. ....+..+..-+.|..+..+..| +|+|--.+
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence 556789999988 33556666667889999999999 88886543
No 471
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=51.65 E-value=1.1e+02 Score=27.54 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCCcEEEEEc---------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC-CCCCcEEEEEeCCCe
Q 016134 274 HTDAPMSLLCW---------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND-PDGKPVLICACNDNT 343 (394)
Q Consensus 274 h~~~v~~l~~~---------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~l~sgs~dg~ 343 (394)
....|+|+..- -..|+.|.+++.|.|.|-..-..+....-..-+. .+.....|. -|. .|+.++.||.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdy--RI~Va~Rdg~ 251 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDY--RIVVACRDGK 251 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccce--EEEEEeCCCE
Confidence 34566777653 2478999999999999987665555554443332 334445564 454 5777889999
Q ss_pred EEEE
Q 016134 344 VHLY 347 (394)
Q Consensus 344 I~iw 347 (394)
|++.
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 8874
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=48.13 E-value=4.1e+02 Score=29.14 Aligned_cols=132 Identities=9% Similarity=0.072 Sum_probs=76.1
Q ss_pred CCeEEEEeC-CCCceeEEE--cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134 254 DNTIRVWEL-DTLEPVMTL--NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD 330 (394)
Q Consensus 254 Dg~V~iwd~-~~~~~~~~~--~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 330 (394)
+|.++.|++ +.++.+.-+ ..-.+.|.+++-...++++| ....+++||+-..+.++......-+..+..++ ..
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq----t~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ----TY 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEe----ec
Confidence 445666665 234422221 12345677777665555544 45789999998766655544333233333332 23
Q ss_pred CCcEEEEEeCCCeEEEEECCCC-ceeEEEec---CCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134 331 GKPVLICACNDNTVHLYELPSF-MERGRIFS---KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 331 g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~---~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~ 391 (394)
+. .+++|...-.+.++..+.. ..+..+.. ...|+++.+-..+.+|.+..-|.+.+-.+..
T Consensus 986 ~~-RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 986 GA-RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred ce-EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 34 4566655555665554433 23333333 4458888877777899998888887776643
No 473
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=47.88 E-value=1.6e+02 Score=28.90 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCEEEEEeCCCcEEEE-EeCCCceee--EeecccCC-cceEEEEeeECCC-CCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134 285 DQFLLSCSLDHTIKVW-FATGRGNLE--AAYTHKED-NGVLALGGLNDPD-GKPVLICACNDNTVHLYELPSFMERGRIF 359 (394)
Q Consensus 285 ~~~l~s~s~Dg~i~vw-d~~~~~~~~--~~~~~~~~-~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 359 (394)
+.-|+.++.||-|.-| |++.+.... .....+-. ..+..+ .|+ ...-+++-...|++.++.....+.+..-.
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l----~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL----LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceee----ccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 5668888899988877 555433211 11111111 111111 222 22256777888888888766554443333
Q ss_pred cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134 360 SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK 392 (394)
Q Consensus 360 ~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~ 392 (394)
.-+.+.-++++|.+ ++++- ..|.|+++.++..
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 34467788999998 66554 4567898887653
No 474
>PLN02193 nitrile-specifier protein
Probab=47.83 E-value=2.9e+02 Score=27.35 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=49.6
Q ss_pred cCCeEEEEeCC-----CeEEEEeCCCCceeE--EEc--CCCCCcEEEEEc-CCEEEEEeCCC-----cEEEEEeCCCcee
Q 016134 244 GRSRLCSGSMD-----NTIRVWELDTLEPVM--TLN--DHTDAPMSLLCW-DQFLLSCSLDH-----TIKVWFATGRGNL 308 (394)
Q Consensus 244 ~~~~l~sgs~D-----g~V~iwd~~~~~~~~--~~~--~h~~~v~~l~~~-~~~l~s~s~Dg-----~i~vwd~~~~~~~ 308 (394)
.+.+++.|+.+ ..+.+||+.+.+-.. .+. .....-.++... +++.+.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34455555543 357888987644221 111 011111223223 56666666543 4667777654321
Q ss_pred eEeecc---cCCcceEEEEeeECCCCCcEEEEEeCC----CeEEEEECCCCce
Q 016134 309 EAAYTH---KEDNGVLALGGLNDPDGKPVLICACND----NTVHLYELPSFME 354 (394)
Q Consensus 309 ~~~~~~---~~~~~~~~~~~~~s~~g~~~l~sgs~d----g~I~iwd~~~~~~ 354 (394)
. .... ........+. .-+++ +++.++.+ ..+.+||+.+.+-
T Consensus 308 ~-~~~~~~~~~~R~~~~~~---~~~gk-iyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLE---VVQGK-VWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred e-CCCCCCCCCCCCCcEEE---EECCc-EEEEECCCCCccCceEEEECCCCEE
Confidence 1 1110 0001111111 12456 66666654 4689999987643
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.67 E-value=2.3e+02 Score=26.03 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC--CC-c-----eeecCCCcEEEec
Q 016134 151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR--DG-T-----AWNIESSAEFSLD 210 (394)
Q Consensus 151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~--Dg-~-----vWd~~~~~~~~~~ 210 (394)
.|..|-+||..+. +-...-.+-++.|++|.|..+.++++.|.- ++ . .||+.+.....+.
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4668999998765 334444456789999999866677776652 12 1 4888777654443
No 476
>PLN02193 nitrile-specifier protein
Probab=47.44 E-value=2.9e+02 Score=27.31 Aligned_cols=106 Identities=5% Similarity=0.022 Sum_probs=52.2
Q ss_pred cCCeEEEEeCC-----CeEEEEeCCCCceeEEEcC------CCCCcEEEEEcCCEEEEEeCC----CcEEEEEeCCCcee
Q 016134 244 GRSRLCSGSMD-----NTIRVWELDTLEPVMTLND------HTDAPMSLLCWDQFLLSCSLD----HTIKVWFATGRGNL 308 (394)
Q Consensus 244 ~~~~l~sgs~D-----g~V~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~l~s~s~D----g~i~vwd~~~~~~~ 308 (394)
.+.+++.|+.+ ..+..||+.+.+-. .+.. .......+.+.+++++.++.+ ..+.+||+.+.+-.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 34555556543 34677888764421 1111 111122333447777777655 45888998765432
Q ss_pred eEeec--ccCCcceEEEEeeECCCCCcEEEEEeCC--------------CeEEEEECCCCce
Q 016134 309 EAAYT--HKEDNGVLALGGLNDPDGKPVLICACND--------------NTVHLYELPSFME 354 (394)
Q Consensus 309 ~~~~~--~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------------g~I~iwd~~~~~~ 354 (394)
..... ...+....+. . .-+++ +++.|+.+ +.+.+||+.+.+-
T Consensus 357 ~~~~~g~~P~~R~~~~~-~--~~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 357 QVETFGVRPSERSVFAS-A--AVGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EeccCCCCCCCcceeEE-E--EECCE-EEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 22111 0111111111 1 12444 77777743 2578899887643
No 477
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.58 E-value=1.2e+02 Score=27.41 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEE----EEC-CCCEEEEEeCCCeEEEE
Q 016134 331 GKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI----EIG-PDKLFFTGDGAGMLGVW 387 (394)
Q Consensus 331 g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l----~~s-p~~~l~tgs~Dg~I~vW 387 (394)
....|+.|.+++.|.|.|......+.++.-......+ .|. -|..|+.++.||.|.+-
T Consensus 194 a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4447899999999999999998887777664432233 232 34489999999998764
No 478
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.06 E-value=2.8e+02 Score=26.30 Aligned_cols=110 Identities=11% Similarity=-0.047 Sum_probs=61.9
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-Cc-EEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccC-CcceE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-AP-MSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVL 321 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-~v-~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~ 321 (394)
...++.++.++.+..+|.++++.+........ .+ .........+...+.++.+.-.|..+++..-....... .....
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~ 190 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY 190 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccc
Confidence 45588889999999999988998888776551 11 11111134455555778888888877766544333221 10000
Q ss_pred EEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEE
Q 016134 322 ALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRI 358 (394)
Q Consensus 322 ~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~ 358 (394)
.- .. ..++ .+..+.. ++.+.-.|..++...-..
T Consensus 191 ~~-~~-~~~~--~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 191 GS-PA-IASG--TVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cC-ce-eecc--eEEEecCCCcceEEEEEccCCcEeeee
Confidence 00 00 1233 3444444 556777777777665553
No 479
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=44.25 E-value=1.4e+02 Score=27.54 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=38.8
Q ss_pred EEEEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134 334 VLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 334 ~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~ 390 (394)
+|+.|.++| |.+.++... .....+.....|+++...+.. +++.++....++++++.
T Consensus 15 ~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 15 WLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred EEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 788898887 555556543 345556667789999999876 44455555569999873
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.62 E-value=82 Score=34.85 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=55.5
Q ss_pred eCCCcEEEEEeCCCceeeEeecccCCcceEEEE----eeECCCCCcEEEEEeCCCeEEEEECCCCce---------eEEE
Q 016134 292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG----GLNDPDGKPVLICACNDNTVHLYELPSFME---------RGRI 358 (394)
Q Consensus 292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~---------~~~~ 358 (394)
+-|+.+.+|+..++.....+.+..+.+-.+.+. ..|-|.=+++|+.+. --.|.|+-+...+. ..++
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccceee
Confidence 458899999999877666665555433333321 123444454555443 34566665432211 1112
Q ss_pred ec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134 359 FS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL 390 (394)
Q Consensus 359 ~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~ 390 (394)
.. .-.|+++....+|.++.++.|| .+|.+.
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~ 205 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG--NLYELV 205 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC--CEEEEE
Confidence 22 4468999977788777777888 556553
No 481
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=43.58 E-value=2.4e+02 Score=27.45 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=55.8
Q ss_pred eEEEEeCCCCceeEEEcC--CCCCcEEEEEcCC--EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134 256 TIRVWELDTLEPVMTLND--HTDAPMSLLCWDQ--FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331 (394)
Q Consensus 256 ~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~--~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 331 (394)
.|.|.|- ....+..+.+ ....|.++.|.++ +++|--+-.-+.+.|+.+.+..+.+-..+-+....- .+|-|
T Consensus 407 ~vYilDe-~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~Y----LHpig 481 (603)
T COG4880 407 AVYILDE-NLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEY----LHPIG 481 (603)
T ss_pred eeEEEcC-CCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhh----ccccC
Confidence 3444442 3455556654 4568999999965 556655656688899988877666554443322222 25554
Q ss_pred Cc-EEEEEeCCCe--EEEEECCCC
Q 016134 332 KP-VLICACNDNT--VHLYELPSF 352 (394)
Q Consensus 332 ~~-~l~sgs~dg~--I~iwd~~~~ 352 (394)
+. +|-.|-.+|. |.+||+.+.
T Consensus 482 en~~lGvG~~~g~vKiSLFdiSdl 505 (603)
T COG4880 482 ENRLLGVGAYQGGVKISLFDISDL 505 (603)
T ss_pred CCcEEEeecccCCceEEEEeccCC
Confidence 43 5556666675 456887654
No 482
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=41.64 E-value=5.9 Score=35.65 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=31.9
Q ss_pred ecccccCCCCCCCCCCCCCCCceeEEEeeeCccCC-CCCccccccCCCc
Q 016134 16 SFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNR-NPCRFAHTESSSL 63 (394)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~p~~ 63 (394)
-.|+|+- .-+.-|-.-..+||.+.++|.|+. .+|.|.|.+.-..
T Consensus 75 ~lfkp~~----qkv~~gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~ 119 (343)
T KOG1763|consen 75 ELFKPAD----QKVPKGVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVER 119 (343)
T ss_pred Hhccccc----cccccCCCchHHHHHHHhccCCCCCCcccccchHHHhh
Confidence 3567722 123334555678999999999999 9999999876654
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=40.19 E-value=3.9e+02 Score=26.64 Aligned_cols=191 Identities=16% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCCeEEEEecCCC-CEEEEEeCCCc--eeecCC--CcEEEecCCCCcEEEEEEcCC------------EEEEEecCCCCC
Q 016134 174 EKAVSGIALPLRS-DKLFSGSRDGT--AWNIES--SAEFSLDGPVGEVYSMVVANE------------MLFAGAQDGHTR 236 (394)
Q Consensus 174 ~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~--~~~~~~~~~~~~v~~l~~~~~------------~l~~~~~~~h~~ 236 (394)
....+++.+-.++ .+|+.|+.-|. ++.+.. -+.+.....-++|.++.+.+. .+++++..+..+
T Consensus 255 ~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~g 334 (504)
T PF10433_consen 255 CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRG 334 (504)
T ss_dssp -S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-
T ss_pred CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCC
Confidence 4555666665544 57888887665 433332 223333445567777777421 556666555555
Q ss_pred CEEEEEec--CC--eEEEEeCCCeEEEEeCCCCc-----e---------eEEEc--CCCCCc------------EEEEEc
Q 016134 237 PVTCLAVG--RS--RLCSGSMDNTIRVWELDTLE-----P---------VMTLN--DHTDAP------------MSLLCW 284 (394)
Q Consensus 237 ~V~~l~~~--~~--~l~sgs~Dg~V~iwd~~~~~-----~---------~~~~~--~h~~~v------------~~l~~~ 284 (394)
.+.-+... .. .++.....+.-++|-++... . +..+. ...+.+ ..+...
T Consensus 335 sL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~ 414 (504)
T PF10433_consen 335 SLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAG 414 (504)
T ss_dssp EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEE
T ss_pred cEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEE
Confidence 55555442 12 33333444455556554311 1 11111 011111 111111
Q ss_pred ---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--
Q 016134 285 ---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-- 359 (394)
Q Consensus 285 ---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-- 359 (394)
++.++=... ..|++.+....+....+..... ..+.+. +. ++. .++.+-.++.+.++.+..........
T Consensus 415 ~~~~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~-~~I~~a--~~--~~~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 415 NVGDGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAG-SIIVAA--SI--NDP-QVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EETTTEEEEEES-SEEEEEESSSTSEEEEEE-TTS----SEE--EE--SSS-EEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EcCCCeEEEEec-CeEEEEECCCCeEEEEEeCCCC-CeEEEE--EE--CCC-EEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 233333332 3477777665554444332221 222221 11 233 45555567889999887765543322
Q ss_pred ----cCCcEEEEEECC
Q 016134 360 ----SKHEVRVIEIGP 371 (394)
Q Consensus 360 ----~~~~v~~l~~sp 371 (394)
....|.|+...|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 366788888776
No 484
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=40.11 E-value=1.5e+02 Score=21.73 Aligned_cols=48 Identities=23% Similarity=0.206 Sum_probs=30.7
Q ss_pred CeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134 342 NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 342 g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
+.|..||..+. ......-...+.|.++|++ ++++....+.|++++.+.
T Consensus 36 ~~Vvyyd~~~~--~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEV--KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEe--EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 44555665431 1122223457889999998 556666788999998764
No 485
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.90 E-value=3.2e+02 Score=25.25 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=87.2
Q ss_pred CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee
Q 016134 235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH-TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE 309 (394)
Q Consensus 235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~ 309 (394)
...|.++.|+ .+.|++......-.|+=..+|+.+.++.-. -...-.+.+. +++.++--.++.+.++.+..+..+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 3447777777 345555555555556655668888776421 2234566666 4455555567888888776553322
Q ss_pred Eeec-------ccC-CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-----------CCcEEEEEEC
Q 016134 310 AAYT-------HKE-DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-----------KHEVRVIEIG 370 (394)
Q Consensus 310 ~~~~-------~~~-~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------~~~v~~l~~s 370 (394)
.... ... ...--. .+|+|... .|..+-+-.-+.||.+........... -..|.++.|+
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEG--lA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEG--LAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred eccceEEeccccCCCCcCcee--eecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2111 111 111111 24688887 566666777788887664321111110 2247788888
Q ss_pred CCC--EEEEEeCCCeEEEEeCCC
Q 016134 371 PDK--LFFTGDGAGMLGVWKLLA 391 (394)
Q Consensus 371 p~~--~l~tgs~Dg~I~vWd~~~ 391 (394)
+.. +|+-+.+++.+.-.|..-
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 754 777788888777666543
No 486
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=35.97 E-value=1.1e+02 Score=18.96 Aligned_cols=31 Identities=3% Similarity=-0.017 Sum_probs=21.0
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEEeCCCcee
Q 016134 278 PMSLLCWDQFLLSCSLDHTIKVWFATGRGNL 308 (394)
Q Consensus 278 v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~ 308 (394)
...+...++++..+..++-+.|.|+.+....
T Consensus 4 a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P 34 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNNGLVIVDISNPSNP 34 (42)
T ss_pred EEEEEEECCEEEEEeCCCCEEEEECCCCCCC
Confidence 4556666777777766677888887765443
No 487
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=35.56 E-value=3.1e+02 Score=25.54 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=0.0
Q ss_pred ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-------CCceeEEEe------cCCcEEEEEECCCC-E-----
Q 016134 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP-------SFMERGRIF------SKHEVRVIEIGPDK-L----- 374 (394)
Q Consensus 314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-------~~~~~~~~~------~~~~v~~l~~sp~~-~----- 374 (394)
+..+.-+..+-+.++|.+. +-++....+...+||.. ...++..+. .....+.+.|+... .
T Consensus 17 ~tDp~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Q ss_pred -------EEEEeCCCeEEEEe
Q 016134 375 -------FFTGDGAGMLGVWK 388 (394)
Q Consensus 375 -------l~tgs~Dg~I~vWd 388 (394)
++.+++||+|.-|.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~ 116 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWA 116 (336)
T ss_pred CcccceeEEEEeCCceEEeec
No 488
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=35.38 E-value=3.9e+02 Score=25.26 Aligned_cols=110 Identities=11% Similarity=-0.073 Sum_probs=63.8
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCcEEEE-EcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT--DAPMSLL-CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321 (394)
Q Consensus 245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~-~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 321 (394)
...++.+..||.|.-.|.++++.+.....-. ..+..-. .....++.++.++.+..+|.++++.+-...... . .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~ 143 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-S---P 143 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-C---e
Confidence 5566677888888888888887654332111 1111111 114558888889988888987776655544433 1 1
Q ss_pred EEE-eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134 322 ALG-GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360 (394)
Q Consensus 322 ~~~-~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 360 (394)
.+. ...-.++ .+...+.++.+...+..++..+-....
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEec
Confidence 111 1112233 344444678888888888877655433
No 489
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=35.35 E-value=1.9e+02 Score=23.17 Aligned_cols=64 Identities=13% Similarity=-0.002 Sum_probs=47.2
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEE-------------EEcCCEEEEEeCCCcEEEEEeCCCceee
Q 016134 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSL-------------LCWDQFLLSCSLDHTIKVWFATGRGNLE 309 (394)
Q Consensus 246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l-------------~~~~~~l~s~s~Dg~i~vwd~~~~~~~~ 309 (394)
.+.+....||.|.|+|..+++.+..+....+. |..+ .-...+-++--+||.+.+-|..++..+.
T Consensus 42 ~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~ 119 (135)
T TIGR03054 42 WLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIE 119 (135)
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEE
Confidence 35677788999999999999999999654332 2211 1125688888899999999988876554
No 490
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.18 E-value=3.1e+02 Score=27.03 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCCC
Q 016134 325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKPS 394 (394)
Q Consensus 325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~~ 394 (394)
+.|+..++.++++-+..-+=.+-.-........+.. +++|.++.|++|+ .||.--.|+.|.+++...+..
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.11 E-value=81 Score=17.28 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=12.4
Q ss_pred EEEEEECCCC-EEEEEeCCCeEEE
Q 016134 364 VRVIEIGPDK-LFFTGDGAGMLGV 386 (394)
Q Consensus 364 v~~l~~sp~~-~l~tgs~Dg~I~v 386 (394)
...++++++| ++++=....+|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 4556666666 4444444455554
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=3.2e+02 Score=24.00 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=38.7
Q ss_pred CCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE----cC-CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCcee
Q 016134 235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL----ND-HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNL 308 (394)
Q Consensus 235 ~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~----~~-h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~ 308 (394)
.++=+.++.++..|+.+....+++.-|.++.....++ .+ .-..+.-+.|- |...|-.-.+..|...|..+++.+
T Consensus 130 ~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 130 EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEE
Confidence 3455666666655666665667777777765443332 21 11223344444 444444444445555555555544
Q ss_pred e
Q 016134 309 E 309 (394)
Q Consensus 309 ~ 309 (394)
.
T Consensus 210 ~ 210 (262)
T COG3823 210 A 210 (262)
T ss_pred E
Confidence 3
No 493
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=34.54 E-value=4.6e+02 Score=26.67 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEE
Q 016134 174 EKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSG 251 (394)
Q Consensus 174 ~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sg 251 (394)
..+|..+.++..+ .|..|+.||. .+|..+++.+.+.... ...+|..+..+ ...+.+|
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dGL~~fd~~~gkalql~s~~--------------------~dk~I~al~~d~qg~LWVG 222 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDGLSYFDAGRGKALQLASPP--------------------LDKAINALIADVQGRLWVG 222 (671)
T ss_pred CccceeeeeeccC-cEEEecCCcceEEccccceEEEcCCCc--------------------chhhHHHHHHHhcCcEEEE
Confidence 4567778887766 4666788886 4777777666432211 11344444444 5667777
Q ss_pred eCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc-CCEEEEEeCCCcEE
Q 016134 252 SMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW-DQFLLSCSLDHTIK 298 (394)
Q Consensus 252 s~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~-~~~l~s~s~Dg~i~ 298 (394)
+.+| |.+.+.+..+...... -....|..+.-+ ...+..|++.|..+
T Consensus 223 TdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r 270 (671)
T COG3292 223 TDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWR 270 (671)
T ss_pred eccc-eEEEchhhccccccCCCCcchheeeeecccCCCEEEeeccccee
Confidence 7666 7777776532221111 133445555544 44666777766443
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=33.89 E-value=4e+02 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.140 Sum_probs=16.4
Q ss_pred cEEEEEc-CCEEEEEeCCCcEEEEE
Q 016134 278 PMSLLCW-DQFLLSCSLDHTIKVWF 301 (394)
Q Consensus 278 v~~l~~~-~~~l~s~s~Dg~i~vwd 301 (394)
.++|+|. +..|+++-..|.|++++
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD 28 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe
Confidence 4677777 33444456689999998
No 495
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=33.27 E-value=1.5e+02 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=17.1
Q ss_pred cEEEEEECCCC-EEEEEe-----CCCeEEEEeCCCC
Q 016134 363 EVRVIEIGPDK-LFFTGD-----GAGMLGVWKLLAK 392 (394)
Q Consensus 363 ~v~~l~~sp~~-~l~tgs-----~Dg~I~vWd~~~~ 392 (394)
.+.+++..||| .|+.|. .+....++.++..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 35667777777 555553 2334556665544
No 496
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=31.57 E-value=5.3e+02 Score=26.04 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEecCCeEEEEeCCCeEEEEeC---CCCceeEEEcCCCCCcEEEEEcCCEEEEEe-------------------------
Q 016134 241 LAVGRSRLCSGSMDNTIRVWEL---DTLEPVMTLNDHTDAPMSLLCWDQFLLSCS------------------------- 292 (394)
Q Consensus 241 l~~~~~~l~sgs~Dg~V~iwd~---~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------------------------- 292 (394)
+.-+|++|+... ++.|.|+|. .+.+.+..+..... +..|-.+++.|+.-+
T Consensus 18 VKTDG~yIY~v~-~~~l~Iida~p~~~~~~~s~I~~~~~-~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (521)
T PF09826_consen 18 VKTDGEYIYVVS-GGRLYIIDAYPAEEMKVVSRIDLDGS-PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYK 95 (521)
T ss_pred EEECCCEEEEEe-CCEEEEEECCCchhceEEEEEecCCC-hhheEEcCCEEEEEEeccccccccccccccccccccccCC
Q ss_pred CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC 337 (394)
Q Consensus 293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s 337 (394)
.--.+.+||+.+......+.........+... --++..++++
T Consensus 96 ~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR---~ig~~vy~Vt 137 (521)
T PF09826_consen 96 SSTKITVYDISDPSNPKLLREIEIEGSYVSSR---KIGDYVYLVT 137 (521)
T ss_pred ceeEEEEEECCCCCCceEEEEEEeeeEEEeEE---EECCEEEEEE
No 497
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=31.49 E-value=7.9e+02 Score=27.59 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=55.9
Q ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc---CCEEEEEe-CCCcEEEEEeCCC--ceee
Q 016134 237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW---DQFLLSCS-LDHTIKVWFATGR--GNLE 309 (394)
Q Consensus 237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~---~~~l~s~s-~Dg~i~vwd~~~~--~~~~ 309 (394)
.|......+.++++-+..|.|.+|+++.......+.. +...+.++... ...+.+-+ ..+....-+.+.. +-..
T Consensus 628 ~vv~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~~~~~~~ 707 (1366)
T KOG1896|consen 628 IVVQTSVADPYVAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSSEAEGLQ 707 (1366)
T ss_pred cEEEEeccCceEEEEEcCCceEEEEeccccchhhccCcccceeEEEechhhhccceEEEeeecccCcccccccccccccc
Confidence 3333333456788888888999999876532222222 35556666654 33444333 1111111011110 0000
Q ss_pred Eee--cccCCcceEEEEeeECCC-CCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134 310 AAY--THKEDNGVLALGGLNDPD-GKPVLICACNDNTVHLYELPSFMERGRIF 359 (394)
Q Consensus 310 ~~~--~~~~~~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 359 (394)
... ....+.. .|+ +.++++...++|++.+|+++....+..+.
T Consensus 708 ~~~~kv~~~egg--------~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~ 752 (1366)
T KOG1896|consen 708 SLPCKVDDEEGG--------SPEQEPYWCVFVTESGTLEIYALPDFDLVFEVD 752 (1366)
T ss_pred cCCccccCCCCC--------CcccCceEEEEEcCCCceEEEccCCcceEEEee
Confidence 000 0000000 111 12477778889999999998877665543
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.05 E-value=2.2e+02 Score=20.99 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=30.9
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCeE
Q 016134 338 ACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGML 384 (394)
Q Consensus 338 gs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I 384 (394)
+..+|.+.-||..+++....+..-.-.+.|++++|+ .|++=..-.+|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 344678889999998776666666678999999999 44443333333
No 499
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.85 E-value=4.4e+02 Score=24.41 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=105.9
Q ss_pred ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CC
Q 016134 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RS 246 (394)
Q Consensus 170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~ 246 (394)
+.|-...|.++.|+|+.+.|++...... ||-...|+.++..... + -..-..|.+- ++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-------------------g-~~DpE~Ieyig~n 140 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-------------------G-FSDPETIEYIGGN 140 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-------------------c-cCChhHeEEecCC
Confidence 4556667999999999999998887766 5666666665322111 1 0111233443 33
Q ss_pred -eEEEEeCCCeEEEEeCCCCceeE-------EEc--CC-CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee-
Q 016134 247 -RLCSGSMDNTIRVWELDTLEPVM-------TLN--DH-TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY- 312 (394)
Q Consensus 247 -~l~sgs~Dg~V~iwd~~~~~~~~-------~~~--~h-~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~- 312 (394)
++++--.+..+.++.+.....+. ++. .+ +...-.++|+ ...|+.+-+..=+.||.+..........
T Consensus 141 ~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 141 QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence 33444456667666554432111 111 12 4456778888 5677777777777887765332111111
Q ss_pred --cccCC--cceEEEE-eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---C-------CcEEEEEECCCCEEEE
Q 016134 313 --THKED--NGVLALG-GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---K-------HEVRVIEIGPDKLFFT 377 (394)
Q Consensus 313 --~~~~~--~~~~~~~-~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~-------~~v~~l~~sp~~~l~t 377 (394)
.+... .....++ ..|++....+|+-+.+++.+.-.|.... .+..+.. . ...-.|+..++|.|..
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 11111 1111111 2345555547777777888877777643 2333221 1 1245678888886666
Q ss_pred EeCCCeEEEE
Q 016134 378 GDGAGMLGVW 387 (394)
Q Consensus 378 gs~Dg~I~vW 387 (394)
.|+-+....+
T Consensus 300 vSEPnlfy~F 309 (316)
T COG3204 300 VSEPNLFYRF 309 (316)
T ss_pred EecCCcceec
Confidence 6665544433
No 500
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=30.77 E-value=4.5e+02 Score=24.60 Aligned_cols=145 Identities=8% Similarity=-0.071 Sum_probs=0.0
Q ss_pred EEEEcCCCceEEEEeccc-------------------CCCeEEEEecCCCCEEEEEeCCCc--------------eeecC
Q 016134 156 HSWFCGEGLTMLAKLEGH-------------------EKAVSGIALPLRSDKLFSGSRDGT--------------AWNIE 202 (394)
Q Consensus 156 ~iWd~~~~~~~~~~l~~h-------------------~~~V~~l~~s~~~~~l~sgs~Dg~--------------vWd~~ 202 (394)
.+|-+++-+.++.++... .=-.+.+++.......+|+-.... ++|+.
T Consensus 114 ~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~ 193 (335)
T TIGR03032 114 RLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIP 193 (335)
T ss_pred cEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeC
Q ss_pred CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134 203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281 (394)
Q Consensus 203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l 281 (394)
+++.+. .--....+-.|+ +++.++=+..|.|.-+|.++++...... -.+....+
T Consensus 194 s~evl~------------------------~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL 248 (335)
T TIGR03032 194 SGEVVA------------------------SGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGL 248 (335)
T ss_pred CCCEEE------------------------cCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccc
Q ss_pred EEcCCEEEEEeCCCc--------------------EEEEEeCCCceeeEeecccCCcceEEEEe
Q 016134 282 LCWDQFLLSCSLDHT--------------------IKVWFATGRGNLEAAYTHKEDNGVLALGG 325 (394)
Q Consensus 282 ~~~~~~l~s~s~Dg~--------------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 325 (394)
.|.|.+++++-..-. |.+.|++++..+..+.-...-.....+.+
T Consensus 249 ~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~v 312 (335)
T TIGR03032 249 AFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAV 312 (335)
T ss_pred ceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEE
Done!