Query 016136
Match_columns 394
No_of_seqs 203 out of 315
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 1E-64 2.2E-69 508.7 14.6 370 18-391 8-402 (415)
2 PRK05467 Fe(II)-dependent oxyg 99.8 3E-20 6.4E-25 176.8 14.6 159 168-351 2-182 (226)
3 smart00702 P4Hc Prolyl 4-hydro 99.8 2.6E-19 5.6E-24 160.8 13.2 162 166-345 1-178 (178)
4 PLN00052 prolyl 4-hydroxylase; 99.6 3.1E-14 6.7E-19 141.4 12.4 175 165-351 53-257 (310)
5 PHA02813 hypothetical protein; 99.3 6.9E-12 1.5E-16 125.7 11.3 154 166-342 5-178 (354)
6 COG3128 PiuC Uncharacterized i 99.2 2.2E-10 4.8E-15 106.9 11.5 165 166-351 2-185 (229)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.0 2.8E-10 6.1E-15 92.9 5.1 83 253-345 3-100 (100)
8 PHA02869 C4L/C10L-like gene fa 99.0 2.2E-09 4.7E-14 109.5 11.6 82 243-342 98-187 (418)
9 KOG1971 Lysyl hydroxylase [Pos 98.9 1.4E-09 3E-14 111.2 5.2 98 123-231 303-415 (415)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.4 3.8E-07 8.2E-12 74.3 4.7 79 251-345 4-97 (98)
11 KOG1591 Prolyl 4-hydroxylase a 98.2 8.5E-06 1.8E-10 80.9 10.7 160 165-347 96-285 (289)
12 PF09859 Oxygenase-NA: Oxygena 97.3 0.00038 8.3E-09 64.3 5.7 82 252-342 65-168 (173)
13 PF05721 PhyH: Phytanoyl-CoA d 97.3 0.0048 1E-07 54.4 12.1 166 167-338 5-210 (211)
14 PF12851 Tet_JBP: Oxygenase do 97.2 0.00073 1.6E-08 62.2 6.0 72 260-345 83-170 (171)
15 TIGR02408 ectoine_ThpD ectoine 97.0 0.019 4E-07 56.1 14.1 175 166-347 28-249 (277)
16 TIGR01762 chlorin-enz chlorina 96.8 0.028 6.2E-07 55.6 13.9 40 308-347 208-250 (288)
17 PF13661 2OG-FeII_Oxy_4: 2OG-F 96.3 0.0057 1.2E-07 48.1 4.1 40 253-294 15-66 (70)
18 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.1 0.09 2E-06 47.6 11.4 154 167-341 1-192 (194)
19 TIGR02466 conserved hypothetic 96.0 0.16 3.5E-06 48.2 13.4 92 250-343 97-196 (201)
20 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.067 1.4E-06 44.4 7.2 87 252-340 3-98 (101)
21 COG3826 Uncharacterized protei 94.9 0.055 1.2E-06 51.4 5.9 84 251-343 126-231 (236)
22 PRK15401 alpha-ketoglutarate-d 94.4 0.46 1E-05 45.7 10.9 156 162-342 14-210 (213)
23 PF03336 Pox_C4_C10: Poxvirus 92.8 0.22 4.8E-06 50.9 6.1 82 244-341 75-164 (339)
24 PLN03001 oxidoreductase, 2OG-F 88.6 1 2.2E-05 44.1 6.1 79 253-347 120-214 (262)
25 PLN02276 gibberellin 20-oxidas 88.4 1.4 3.1E-05 44.9 7.3 79 253-347 210-304 (361)
26 PLN02904 oxidoreductase 87.4 1.7 3.7E-05 44.4 7.1 79 253-347 212-306 (357)
27 PLN02947 oxidoreductase 87.1 1.9 4.2E-05 44.4 7.4 79 253-347 229-323 (374)
28 PLN02365 2-oxoglutarate-depend 87.0 1.7 3.7E-05 43.2 6.7 80 253-345 153-248 (300)
29 KOG3710 EGL-Nine (EGLN) protei 86.6 2.6 5.7E-05 41.5 7.5 90 250-351 144-244 (280)
30 PLN00417 oxidoreductase, 2OG-F 85.7 2.3 5.1E-05 43.2 7.0 80 253-347 207-302 (348)
31 PLN02984 oxidoreductase, 2OG-F 85.7 2.6 5.7E-05 42.9 7.4 79 253-347 204-299 (341)
32 PLN02216 protein SRG1 84.9 2.4 5.2E-05 43.3 6.7 80 253-347 214-309 (357)
33 PLN02156 gibberellin 2-beta-di 84.8 2.9 6.2E-05 42.5 7.2 80 253-347 182-279 (335)
34 PLN02912 oxidoreductase, 2OG-F 84.1 3.5 7.7E-05 41.9 7.5 79 253-347 201-295 (348)
35 PLN03178 leucoanthocyanidin di 83.9 3 6.5E-05 42.5 6.9 71 261-347 227-309 (360)
36 COG3751 EGL-9 Predicted prolin 83.8 3.5 7.6E-05 40.8 7.1 88 253-347 140-241 (252)
37 PLN02750 oxidoreductase, 2OG-F 83.3 3.1 6.6E-05 42.2 6.6 82 253-348 197-294 (345)
38 PLN02485 oxidoreductase 83.0 1.8 3.9E-05 43.4 4.8 74 261-348 204-289 (329)
39 PTZ00273 oxidase reductase; Pr 82.5 3.1 6.7E-05 41.5 6.2 80 253-348 181-277 (320)
40 PLN02515 naringenin,2-oxogluta 82.5 3.2 6.9E-05 42.5 6.4 82 253-348 199-296 (358)
41 PLN02254 gibberellin 3-beta-di 81.1 3.4 7.4E-05 42.3 6.1 80 253-347 214-309 (358)
42 PLN02299 1-aminocyclopropane-1 81.1 4.6 0.0001 40.6 7.0 80 253-347 162-257 (321)
43 PLN02704 flavonol synthase 80.8 4.6 0.0001 40.7 6.9 71 261-347 215-297 (335)
44 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 80.1 2.6 5.6E-05 39.6 4.5 82 253-343 100-194 (195)
45 PLN02403 aminocyclopropanecarb 78.1 7.6 0.00017 38.9 7.4 81 253-348 157-254 (303)
46 PLN02393 leucoanthocyanidin di 78.0 7.5 0.00016 39.7 7.4 80 253-347 217-312 (362)
47 PLN02639 oxidoreductase, 2OG-F 77.2 7.7 0.00017 39.2 7.2 80 253-347 194-289 (337)
48 PLN02997 flavonol synthase 76.2 8.9 0.00019 38.7 7.3 80 253-348 187-282 (325)
49 PLN02758 oxidoreductase, 2OG-F 75.0 9.1 0.0002 39.2 7.1 81 253-347 215-311 (361)
50 KOG3200 Uncharacterized conser 72.6 6 0.00013 37.7 4.6 96 164-272 10-109 (224)
51 PLN03002 oxidoreductase, 2OG-F 72.1 7.8 0.00017 39.1 5.7 83 253-347 186-285 (332)
52 KOG0143 Iron/ascorbate family 71.4 9.2 0.0002 38.7 6.1 81 253-347 180-276 (322)
53 TIGR00568 alkb DNA alkylation 70.5 12 0.00026 34.7 6.1 65 250-328 96-168 (169)
54 PF05118 Asp_Arg_Hydrox: Aspar 70.2 9.7 0.00021 34.6 5.4 78 249-342 80-157 (163)
55 COG5285 Protein involved in bi 67.2 26 0.00056 35.6 8.1 99 249-347 114-233 (299)
56 PHA02866 Hypothetical protein; 64.7 71 0.0015 32.8 10.6 151 165-341 5-164 (333)
57 PHA02923 hypothetical protein; 51.1 35 0.00076 34.9 5.9 78 246-342 65-142 (315)
58 PF10637 Ofd1_CTDD: Oxoglutara 49.9 32 0.00068 34.3 5.3 126 167-292 32-189 (266)
59 KOG3889 Predicted gamma-butyro 48.0 31 0.00068 35.2 4.9 80 208-292 136-223 (371)
60 KOG3425 Uncharacterized conser 45.4 6.7 0.00015 35.1 -0.1 30 331-368 21-50 (128)
61 KOG3844 Predicted component of 44.6 4.3E+02 0.0094 28.5 12.8 175 162-353 33-224 (476)
62 cd00250 CAS_like Clavaminic ac 40.6 41 0.0009 32.1 4.5 32 261-292 93-130 (262)
63 TIGR02409 carnitine_bodg gamma 39.6 62 0.0013 32.9 5.8 73 208-290 134-219 (366)
64 PRK13916 plasmid segregation p 37.9 14 0.00031 31.2 0.7 33 69-109 18-50 (97)
65 PF11265 Med25_VWA: Mediator c 35.4 51 0.0011 32.3 4.2 71 217-289 25-107 (226)
66 TIGR02410 carnitine_TMLD trime 35.4 79 0.0017 32.3 5.8 75 208-292 126-213 (362)
67 KOG4459 Membrane-associated pr 35.3 13 0.00027 39.9 -0.0 65 274-347 369-435 (471)
68 cd03012 TlpA_like_DipZ_like Tl 29.6 17 0.00037 30.6 -0.1 10 360-369 32-41 (126)
69 PRK13264 3-hydroxyanthranilate 29.6 4.9E+02 0.011 24.7 10.1 124 216-371 7-131 (177)
70 KOG3959 2-Oxoglutarate- and ir 29.2 77 0.0017 31.8 4.2 99 159-271 65-174 (306)
71 cd02967 mauD Methylamine utili 28.6 33 0.00071 27.8 1.4 12 361-372 31-42 (114)
72 TIGR00411 redox_disulf_1 small 28.4 26 0.00056 26.7 0.7 13 360-372 8-20 (82)
73 PF02311 AraC_binding: AraC-li 28.1 1.5E+02 0.0032 23.9 5.2 33 311-343 43-76 (136)
74 PF02668 TauD: Taurine catabol 28.0 39 0.00084 31.3 2.0 32 262-293 95-132 (258)
75 TIGR00412 redox_disulf_2 small 27.7 21 0.00047 28.0 0.2 11 359-369 6-16 (76)
76 PF08534 Redoxin: Redoxin; In 25.8 21 0.00046 30.4 -0.2 11 361-371 38-49 (146)
77 TIGR02738 TrbB type-F conjugat 25.2 25 0.00053 31.9 0.1 12 361-372 60-71 (153)
78 cd02956 ybbN ybbN protein fami 24.0 31 0.00068 27.2 0.5 13 360-372 21-33 (96)
79 PF13905 Thioredoxin_8: Thiore 23.4 25 0.00053 27.7 -0.2 10 359-368 9-18 (95)
80 PF15379 DUF4606: Domain of un 22.9 74 0.0016 27.8 2.5 18 358-375 29-46 (104)
81 cd03008 TryX_like_RdCVF Trypar 22.6 30 0.00064 31.3 0.1 12 360-371 34-45 (146)
82 PRK09943 DNA-binding transcrip 22.5 2.7E+02 0.0058 25.3 6.3 62 251-333 109-170 (185)
83 PF04378 RsmJ: Ribosomal RNA s 22.4 1.3E+02 0.0029 29.7 4.5 62 165-227 156-226 (245)
84 cd02970 PRX_like2 Peroxiredoxi 21.6 53 0.0012 27.6 1.5 10 361-370 34-43 (149)
85 cd03000 PDI_a_TMX3 PDIa family 21.5 32 0.00069 27.9 0.1 13 360-372 24-36 (104)
86 COG0526 TrxA Thiol-disulfide i 21.4 30 0.00066 26.0 -0.1 11 359-369 40-50 (127)
87 cd02993 PDI_a_APS_reductase PD 21.4 35 0.00075 28.2 0.3 13 360-372 30-42 (109)
88 PF14687 DUF4460: Domain of un 21.2 45 0.00098 29.1 0.9 41 111-158 5-45 (112)
89 TIGR03404 bicupin_oxalic bicup 21.1 3.3E+02 0.0073 28.2 7.4 73 251-340 69-141 (367)
90 cd03010 TlpA_like_DsbE TlpA-li 21.0 36 0.00079 28.3 0.3 11 361-371 35-45 (127)
91 PF00578 AhpC-TSA: AhpC/TSA fa 20.6 60 0.0013 26.4 1.6 24 334-372 24-47 (124)
92 cd02985 TRX_CDSP32 TRX family, 20.3 36 0.00078 27.9 0.1 11 360-370 24-34 (103)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-64 Score=508.67 Aligned_cols=370 Identities=36% Similarity=0.489 Sum_probs=351.5
Q ss_pred CcccCCCCCcccccccCCCCccccccccccccCCCCCCCCCCCCCccccCChhHHHHhhhcCCCccCCCCHHHHHHHHHH
Q 016136 18 NGVVSGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMRE 97 (394)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~ 97 (394)
..+..++.+|.. +... +.....++.++...||.+|.+++|+|++|+|+++...+||.|+||.+|++.++.|+|||.+
T Consensus 8 f~g~a~~~~q~~-~~~~--~d~~d~ni~ld~~~~~fq~l~g~~~dv~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d 84 (415)
T KOG1971|consen 8 FIGYAPQVHQIV-QWPI--EDTDDLNITLDHRSRIFQNLNGAYEDVVLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLD 84 (415)
T ss_pred ccccCccccccc-cccc--CcchhhcccccCcCcccccCcCCcCCeeEecccCchhhhhhcCCCcceeeccCccHHHHHH
Confidence 345566777777 5444 4444457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCChhhhhhHHhhHHHHHHHHhccCCCCccccccCCcccCCchhHHHhccccHHhhhhhccccCCcEEEeecCCHH
Q 016136 98 ILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPR 177 (394)
Q Consensus 98 il~~~~~~~~r~~~~~~~~~r~~i~~~Y~plh~ely~lnpe~~l~p~f~~ai~~~~~~~~~~i~~ep~P~Vy~fpvfspe 177 (394)
+|.+|+|..++.++..++.||++|.++||+|+-+.|.++|+.++.|+|..+...++++.|+++.+|+.|++|+||||++.
T Consensus 85 ~l~nY~~r~~~~~~l~~~~~r~~~~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~ 164 (415)
T KOG1971|consen 85 YLGNYIPREWTGCSLCCKNYRELIKSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPD 164 (415)
T ss_pred HHhhhcchhhhhhhccccccchhhhhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccccccccCCCCccccccccc--chHHHHHHHHHHHhhhhhh--------------------
Q 016136 178 FCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAVLDDF--GLETMLDKLMETYIRPLSK-------------------- 235 (394)
Q Consensus 178 fC~~LIeE~E~f~~Ws~gs~~~i~rPn~mN~ygvvLddi--Gl~~~~~~Ll~~yl~PL~~-------------------- 235 (394)
||++++.++|+|+.|+.+++++++|||+|++|+++++++ +|+.+..+|.++|+.||++
T Consensus 165 ~~ea~~~evE~~r~~~~dad~~i~~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg 244 (415)
T KOG1971|consen 165 FSEARLMEVEHFRKFSVDADFVITRPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVG 244 (415)
T ss_pred HHHHHHHHHHHhhhcccccceeccCChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhccccee
Confidence 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred -hhcccccCCCCcccceeEEEEeCC-CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecC
Q 016136 236 -VFFAEVGGSTLDSHHGFVVEYGKD-RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSH 313 (394)
Q Consensus 236 -~LfPe~~g~~Ldsh~~FVVrY~~~-~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~ 313 (394)
.+||.+++..||+|++|++.|..+ .|+++++|+|++++|+|+||++.|+||+++|.+..|++|..+ .+..++|+++|
T Consensus 245 ~~~~P~v~~~yl~~~~~f~~e~~~~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h 323 (415)
T KOG1971|consen 245 VWNVPYVCGAYLDSHDAFRVESSEDNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSH 323 (415)
T ss_pred EEeecccceeEEecccceeeeccCcCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcC
Confidence 999999999999999999999655 999999999999999999999999999999999999999876 67889999999
Q ss_pred CCceEEEecCCCCcCCccCCccc-eeEEEeecchhHHHHHHhhhccccccccccchhHHHHHHHHHHHhHHHHHhhhcc
Q 016136 314 VPGRAVLHRGRHRHGARATTSGH-RVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSELLKQEGE 391 (394)
Q Consensus 314 ~~G~AlLHpGrh~HeglpVTsG~-RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (394)
.+|+|+||+|.|.|++.++++|+ +-+++.||.++.+|+|.+|+.+|+.||+.|..+|++++.++..+||...+++.+.
T Consensus 324 ~p~qa~LHrg~~~~~a~~~~~~~~~~nv~~~~~~~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~ 402 (415)
T KOG1971|consen 324 DPGQAYLHRGYHKHGARATIVGQPCPNVYWFPISSLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGF 402 (415)
T ss_pred CCccceecCcchhccccccCCCCCCCceeeehhHHHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhh
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999988764
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.84 E-value=3e-20 Score=176.84 Aligned_cols=159 Identities=23% Similarity=0.373 Sum_probs=116.0
Q ss_pred EEEee-cCCHHHHHHHHHHHHhhhhhhhccc-ccccccCCCCcccccccccchHH-HHHHHHHHHhh--hhhhhhccccc
Q 016136 168 VFTFE-MLQPRFCELLLAEVENFEKWVNEAK-FRIMRPNTMNKYGAVLDDFGLET-MLDKLMETYIR--PLSKVFFAEVG 242 (394)
Q Consensus 168 Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~-~~i~rPn~mN~ygvvLddiGl~~-~~~~Ll~~yl~--PL~~~LfPe~~ 242 (394)
++.+| |||+++|+++|+.+|.- .|..|.. .....+...||..+..++. +.. +++.++ ..+. |+ |.
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~-~~L~~~~l----~~--- 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLIL-DALTRNPL----FF--- 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHH-HHHhcCch----hh---
Confidence 56675 99999999999999984 4653322 2222345677877777766 653 444444 4443 32 21
Q ss_pred CCCCc--ccceeEEEEeCCCCCCCcccccCC-------------ceeEEEecc--ccccCcceEEccccccccccCCCCc
Q 016136 243 GSTLD--SHHGFVVEYGKDRDVDLGFHVDDS-------------EVTLNVCLG--KQFTGGELFFRGTRCEKHVNTGSQT 305 (394)
Q Consensus 243 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-------------evTLNI~Ln--~dFeGGgl~F~~~~c~~hv~~~~~~ 305 (394)
...+. -+...+.||.+|+ ++++|+|++ .+|++|+|| ++|+||+|.|......
T Consensus 72 sa~lp~~i~~~~f~rY~~G~--~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~--------- 140 (226)
T PRK05467 72 SAALPRKIHPPLFNRYEGGM--SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE--------- 140 (226)
T ss_pred hhccccccccceEEEECCCC--ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc---------
Confidence 11121 1233479999886 999999975 589999998 5799999999864321
Q ss_pred cceeeecCCCceEEEecCCCCcCCccCCccceeEEEeecchhHHHH
Q 016136 306 EEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFRE 351 (394)
Q Consensus 306 ~e~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~ 351 (394)
..|+|++|.+|+|++..+|+|.|||+|+||+++.|++|. +|+
T Consensus 141 ---~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~-v~~ 182 (226)
T PRK05467 141 ---HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL-VRD 182 (226)
T ss_pred ---EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH-cCC
Confidence 357899999999999999999999999999999999987 454
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.81 E-value=2.6e-19 Score=160.84 Aligned_cols=162 Identities=26% Similarity=0.409 Sum_probs=109.0
Q ss_pred CcEEEee-cCCHHHHHHHHHHHHhhhhhhhccccccccc----CCCCcccccccccchHHHHHHHHHHHhhhhhhhhccc
Q 016136 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFRIMRP----NTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE 240 (394)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~~~i~rP----n~mN~ygvvLddiGl~~~~~~Ll~~yl~PL~~~LfPe 240 (394)
|+||.++ +|++++|+.||++++... |........+.+ ..++.....+++-.-+.+.+.+. +.+..+ ++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~-~~i~~~----~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLG-WRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIR-QRLADF----LGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhc-ccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHH-HHHHHH----HCC
Confidence 7899996 999999999999999865 321111111111 11222233343321112222222 222222 221
Q ss_pred ccCCCCcccceeEEEEeCCCCCCCcccccCC--------ceeEEEeccccccCcceEEccccccccccCCCCccceeeec
Q 016136 241 VGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS--------EVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYS 312 (394)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------evTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~ 312 (394)
..+.........+++|.+++ .+.+|+|.+ .+|++|+||++++||+|.|....+. ....+.
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g~--~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~----------~~~~v~ 142 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPGG--HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLM----------VCATVK 142 (178)
T ss_pred CchhhccCcceEEEEECCCC--cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCc----------cceEEe
Confidence 11111233456799999875 999999965 6999999999999999999986541 124578
Q ss_pred CCCceEEEecC---CCCcCCccCCccceeEEEeecc
Q 016136 313 HVPGRAVLHRG---RHRHGARATTSGHRVNLLLWCR 345 (394)
Q Consensus 313 ~~~G~AlLHpG---rh~HeglpVTsG~RynLV~W~r 345 (394)
|.+|.+|+|+. +++|++.||++|+||++++|++
T Consensus 143 P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 143 PKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 99999999997 5999999999999999999986
No 4
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.55 E-value=3.1e-14 Score=141.36 Aligned_cols=175 Identities=18% Similarity=0.293 Sum_probs=111.6
Q ss_pred CCcEEEee-cCCHHHHHHHHHHHHh-hhhh-h-hc-ccccccccCCCCcccccccccchHHHHHHHHHHHhhhhhhhhcc
Q 016136 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEKW-V-NE-AKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (394)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E~-f~~W-s-~g-s~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~PL~~~LfP 239 (394)
.|.||.++ |||+++|+.||+..+. +..+ + .+ ++.... .+.+..+++.++.-. +.....+. +.|+-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~-s~~RTS~~~~l~~~~-dpvv~~I~-~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVM-SEVRTSSGMFLDKRQ-DPVVSRIE-ERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcccc-CCCEEecceeecCCC-CHHHHHHH-HHHHHHh--CCC
Confidence 69999996 9999999999998875 2221 0 00 010000 122334555554322 23333332 2332222 112
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccC------------CceeEEEeccccccCcceEEccccccccccCC----C
Q 016136 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDD------------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTG----S 303 (394)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~------------SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~----~ 303 (394)
.-. .-..-|++|++++ .+.+|+|- ...|+.|+||+..+||+|.|............ .
T Consensus 128 ~~~-----~E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 128 EEN-----AENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred ccc-----CcceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 110 1123489999987 89999992 24899999999999999999975210000000 0
Q ss_pred CccceeeecCCCceEEEecCC---------CCcCCccCCccceeEEEeecchhHHHH
Q 016136 304 QTEEIFDYSHVPGRAVLHRGR---------HRHGARATTSGHRVNLLLWCRSSVFRE 351 (394)
Q Consensus 304 ~~~e~~~~~~~~G~AlLHpGr---------h~HeglpVTsG~RynLV~W~rss~~R~ 351 (394)
-.+.-+.+.|++|.||+|..- -+|+|.||++|++|++..|++...|..
T Consensus 201 c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~ 257 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEH 257 (310)
T ss_pred hhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccC
Confidence 001235689999999999984 599999999999999999999977754
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.33 E-value=6.9e-12 Score=125.75 Aligned_cols=154 Identities=13% Similarity=0.221 Sum_probs=107.5
Q ss_pred CcEEEeecCCHHHH----HHHHHHHHhhh--hhhhccc------ccccccCCCCcccccccccchHHHHHHHHHHHhhhh
Q 016136 166 PGVFTFEMLQPRFC----ELLLAEVENFE--KWVNEAK------FRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPL 233 (394)
Q Consensus 166 P~Vy~fpvfspefC----~~LIeE~E~f~--~Ws~gs~------~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~PL 233 (394)
.++.+.-+|+...- +.|+.+++ +. .|....- ...+.++.+|+-.|++++. +.+|+.+.. +|.+-
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~-~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~-~Lp~~ 80 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIK-YKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK-KLLLS 80 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHh-ccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-hhHHH
Confidence 46777888888843 34444444 11 2432111 1245677789999999988 777877654 33221
Q ss_pred hhhhcccccCCCCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCc
Q 016136 234 SKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQT 305 (394)
Q Consensus 234 ~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~ 305 (394)
.. -++-+...+++.+.+| +||.+|+ .|.+|.|. |.+||.|+||+.++||+|.|.-....
T Consensus 81 l~-~~~lv~~V~vnerirf-yrY~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t--------- 147 (354)
T PHA02813 81 FE-FPQKISDIILDNTITL-IKYEKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT--------- 147 (354)
T ss_pred hc-CCccceeEEEcceEEE-EEECCCc--ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc---------
Confidence 10 0111112466777775 9999998 89999884 56899999999999999999954221
Q ss_pred cceeeecCCCceEEEecCCCCcCCccCCccceeEEEe
Q 016136 306 EEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLL 342 (394)
Q Consensus 306 ~e~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~ 342 (394)
.+ .+|.+|||.++..|+|.+|++|++|+|++
T Consensus 148 ----sI--~~g~dlLFdh~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 148 ----IF--STKNDVLFDKTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred ----eE--eecceEEEecccccCCcEeccCeEEEEEE
Confidence 12 38999999999999999999999999975
No 6
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.17 E-value=2.2e-10 Score=106.86 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=104.2
Q ss_pred CcEEEee-cCCHHHHHHHHHHHHhhhhhhhcccc-cccccCCCCcccccccccchHHHHHHHHHHHhhhhhhhhccc-cc
Q 016136 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF-RIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE-VG 242 (394)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~~-~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~PL~~~LfPe-~~ 242 (394)
+..+-+| |||+..|.++-+.++.- .|+.|.-. ...-+...||-.+..+. .++..+..++.+-+.-. .++|.- ..
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A-~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~~-plff~aALp 78 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQA-EWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTAH-PLFFAAALP 78 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhc-cccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHhc-hhHHHhhcc
Confidence 3456676 99999998888887763 56654432 11223344553333332 22222222221111110 012210 01
Q ss_pred CCCCcccceeEEEEeCCCCCCCcccccCC--------------ceeEEEecc--ccccCcceEEccccccccccCCCCcc
Q 016136 243 GSTLDSHHGFVVEYGKDRDVDLGFHVDDS--------------EVTLNVCLG--KQFTGGELFFRGTRCEKHVNTGSQTE 306 (394)
Q Consensus 243 g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------------evTLNI~Ln--~dFeGGgl~F~~~~c~~hv~~~~~~~ 306 (394)
...+-.. +-+|..+. .|++|+|+. .+++|..|+ +||+||+|+..+....
T Consensus 79 ~t~~~P~---Fn~Y~eg~--~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~---------- 143 (229)
T COG3128 79 RTCLPPL---FNRYQEGD--FFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGN---------- 143 (229)
T ss_pred cccCCch---hhhccCCC--cccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccc----------
Confidence 1111111 36787776 899999953 356777776 6999999999987653
Q ss_pred ceeeecCCCceEEEecCCCCcCCccCCccceeEEEeecchhHHHH
Q 016136 307 EIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFRE 351 (394)
Q Consensus 307 e~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~ 351 (394)
..++.+.|..|++|+.-+|++.|||+|.|+..+.|.+|- +|+
T Consensus 144 --h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl-ir~ 185 (229)
T COG3128 144 --HRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL-IRD 185 (229)
T ss_pred --eEEeccCCCEEEcccccceeccccccCceEEEeeehHHH-hhh
Confidence 345788899999999999999999999999999999986 676
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.03 E-value=2.8e-10 Score=92.93 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=62.9
Q ss_pred EEEEeCCCCCCCcccccC-----CceeEEEeccc-c--ccCcceEEccccccccccCCCCccceeeec-----CCCceEE
Q 016136 253 VVEYGKDRDVDLGFHVDD-----SEVTLNVCLGK-Q--FTGGELFFRGTRCEKHVNTGSQTEEIFDYS-----HVPGRAV 319 (394)
Q Consensus 253 VVrY~~~~d~~L~~H~D~-----SevTLNI~Ln~-d--FeGGgl~F~~~~c~~hv~~~~~~~e~~~~~-----~~~G~Al 319 (394)
+.+|.++. .+.+|.|. ..+|+.++||+ + ++||+|.|.... .. ......+. |.+|.+|
T Consensus 3 ~~~y~~G~--~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~-------~~~~~~~~~~~~~p~~g~~v 72 (100)
T PF13640_consen 3 LNRYPPGG--FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DS-------DDVSREVEDFDIVPKPGRLV 72 (100)
T ss_dssp EEEEETTE--EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS--T-------SSTCEEEGGGSEE-BTTEEE
T ss_pred EEEECcCC--EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc-cC-------CCcceEEEeccccCCCCEEE
Confidence 56787776 99999999 35999999984 4 799999999753 10 01112223 9999999
Q ss_pred EecC-CCCcCCccC-CccceeEEEeecc
Q 016136 320 LHRG-RHRHGARAT-TSGHRVNLLLWCR 345 (394)
Q Consensus 320 LHpG-rh~HeglpV-TsG~RynLV~W~r 345 (394)
+|++ ..+|++.|| ..|+|++++.|.+
T Consensus 73 ~F~~~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 73 IFPSDNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEESCTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEeCCCCeecCcccCCCCCEEEEEEEEC
Confidence 9999 899999999 9999999999974
No 8
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=109.48 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCCCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCC
Q 016136 243 GSTLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHV 314 (394)
Q Consensus 243 g~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~ 314 (394)
..+++.+.+| +||.+|+ .|.+|.|. |.+||.|+||+.++||+|.|.-..+ ..+.|+
T Consensus 98 ~V~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~-------------~sI~pk 161 (418)
T PHA02869 98 SVTVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNN-------------TSVKLK 161 (418)
T ss_pred eEEEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCC-------------ceEecC
Confidence 3467777775 9999998 99999996 5699999999999999999996221 236799
Q ss_pred CceEEEecCCCCcCCccCCccceeEEEe
Q 016136 315 PGRAVLHRGRHRHGARATTSGHRVNLLL 342 (394)
Q Consensus 315 ~G~AlLHpGrh~HeglpVTsG~RynLV~ 342 (394)
+| |||.++..|+|.+|++|++|+|..
T Consensus 162 sg--LLFdh~l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 162 TD--HLFDKTIEHESITVESGRKCVALF 187 (418)
T ss_pred CC--eEeccccccCCcEeecCeEEEEEE
Confidence 99 999999999999999999999853
No 9
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.4e-09 Score=111.18 Aligned_cols=98 Identities=22% Similarity=0.495 Sum_probs=79.4
Q ss_pred hccC--CCCc-ccccc--CC----cccCCchhHHHhccccHHhhhhhccccCCcEEEeecCCHHHHHHHHHHHHhhhhhh
Q 016136 123 TNYQ--PLHR-ELYNL--HI----GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWV 193 (394)
Q Consensus 123 ~~Y~--plh~-ely~l--np----e~~l~p~f~~ai~~~~~~~~~~i~~ep~P~Vy~fpvfspefC~~LIeE~E~f~~Ws 193 (394)
..|+ ++++ ++|+| |+ ++|||+.|.++...+ .++.++||+|||||++ .+|++|++++++|++|+
T Consensus 303 ~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~el~~~me~f~~Ws 374 (415)
T KOG1971|consen 303 GKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCDELVEEMEEFGRWS 374 (415)
T ss_pred ccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHHHHHHHHHHhhccc
Confidence 3455 5666 89988 33 899999999998875 4789999999999998 99999999999999999
Q ss_pred hcccccccccCCCCccc------ccccccchHHHHHHHHHHHhh
Q 016136 194 NEAKFRIMRPNTMNKYG------AVLDDFGLETMLDKLMETYIR 231 (394)
Q Consensus 194 ~gs~~~i~rPn~mN~yg------vvLddiGl~~~~~~Ll~~yl~ 231 (394)
+|.+...+. ...|. +.+.++|++..|.+++..|++
T Consensus 375 ~g~~~D~r~---~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 375 GGCAEDKRL---AGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred ccchhhhhh---cCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 988875422 22233 347779999999999998873
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.39 E-value=3.8e-07 Score=74.35 Aligned_cols=79 Identities=25% Similarity=0.303 Sum_probs=58.1
Q ss_pred eeEEEEe-CCCCCCCcccccC--CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016136 251 GFVVEYG-KDRDVDLGFHVDD--SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (394)
Q Consensus 251 ~FVVrY~-~~~d~~L~~H~D~--SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr--- 324 (394)
..+.+|. ++.+..+++|+|. +.+|++++ .++|||.|....+ ...+.+.++..+|+.|.
T Consensus 4 ~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~------------~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 4 LRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGE------------WVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp EEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTE------------EEE----TTCEEEEEBHHHH
T ss_pred EEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheecccccc------------ccCccCccceeeeeceeeee
Confidence 4578999 6677899999999 99999998 7899999996542 34456777888888887
Q ss_pred ---------CCcCCccCCccceeEEEeecc
Q 016136 325 ---------HRHGARATTSGHRVNLLLWCR 345 (394)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~r 345 (394)
.+|++.+++.|.||+++.|++
T Consensus 68 ~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 68 ILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp HHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 899999999999999999986
No 11
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=98.21 E-value=8.5e-06 Score=80.86 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=99.5
Q ss_pred CCcEEEee-cCCHHHHHHHHHHHH-hhhhhhh-ccccccccc-C-CCCcccccccccchHHHHHHHHHHHhhhhhhhhcc
Q 016136 165 SPGVFTFE-MLQPRFCELLLAEVE-NFEKWVN-EAKFRIMRP-N-TMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (394)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E-~f~~Ws~-gs~~~i~rP-n-~mN~ygvvLddiGl~~~~~~Ll~~yl~PL~~~LfP 239 (394)
.|.|+.|+ |++++.|+.||+..+ ....+.- ..+....-. . .+.--|.-+.+ +-... ...+++.|.-++. +|
T Consensus 96 ~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~-~~~~~-~~~i~~ri~~~T~--l~ 171 (289)
T KOG1591|consen 96 DPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD-GASPV-VSRIEQRIADLTG--LP 171 (289)
T ss_pred CCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC-CCCHH-HHHHHHHHHhccC--CC
Confidence 48899996 999999999999866 3443211 011000000 0 01111222333 22221 1222223322221 11
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccCCc----------------eeEEEeccccccCcceEEccccccccccCCC
Q 016136 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE----------------VTLNVCLGKQFTGGELFFRGTRCEKHVNTGS 303 (394)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se----------------vTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~ 303 (394)
--.+-.| -|++|+.|+ ++.+|+|-.. -|+.++|++.=+||+|.|....-.
T Consensus 172 ~e~~E~l-----qVlnYg~Gg--~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~------- 237 (289)
T KOG1591|consen 172 VENGESL-----QVLNYGLGG--HYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMK------- 237 (289)
T ss_pred cccCccc-----eEEEecCCc--cccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCCc-------
Confidence 1111111 289999887 9999988431 388899999999999999987531
Q ss_pred CccceeeecCCCceEEEecCC---------CCcCCccCCccceeEEEeecchh
Q 016136 304 QTEEIFDYSHVPGRAVLHRGR---------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 304 ~~~e~~~~~~~~G~AlLHpGr---------h~HeglpVTsG~RynLV~W~rss 347 (394)
..+.|++|.|+++--- -.|+|.||..|.||+...|+|..
T Consensus 238 -----~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~ 285 (289)
T KOG1591|consen 238 -----PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEK 285 (289)
T ss_pred -----ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeec
Confidence 2368999999987422 78999999999999999999864
No 12
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.00038 Score=64.30 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=61.1
Q ss_pred eEEEEeCCCCCCCcccccC-Cc--e--eEEEec---cccccCcceEEccccccccccCCCCccceeeecCCCceEEEecC
Q 016136 252 FVVEYGKDRDVDLGFHVDD-SE--V--TLNVCL---GKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRG 323 (394)
Q Consensus 252 FVVrY~~~~d~~L~~H~D~-Se--v--TLNI~L---n~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpG 323 (394)
.+.+|+++. .-..|.|- .+ | -+-|.| ++||+|||...-+.+.. +. .+...+.++.|.|+||.-
T Consensus 65 lllrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR--~Q-----SR~~V~~L~qGda~if~t 135 (173)
T PF09859_consen 65 LLLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR--MQ-----SRAMVLPLRQGDALIFAT 135 (173)
T ss_pred hhheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCC--cc-----CccccCCcCCCCEEEEec
Confidence 368898876 78888883 22 3 444555 46999999999876643 22 234456899999999975
Q ss_pred C--------------CCcCCccCCccceeEEEe
Q 016136 324 R--------------HRHGARATTSGHRVNLLL 342 (394)
Q Consensus 324 r--------------h~HeglpVTsG~RynLV~ 342 (394)
+ ++|+.-+|.+|+||.|-+
T Consensus 136 ~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgl 168 (173)
T PF09859_consen 136 NHRPVRGARGYYRVNMRHGVSRVRSGERHTLGL 168 (173)
T ss_pred CCCCcCCCccceecccccccccccccceEEEEE
Confidence 4 689999999999999854
No 13
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.28 E-value=0.0048 Score=54.38 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=79.9
Q ss_pred cEEEee-cCCHHHHHHHHHHHHhh--hhhhhcccccccccCC-CCcccccc-cccchHHHHHHHHHH-Hhhhhhhhhccc
Q 016136 167 GVFTFE-MLQPRFCELLLAEVENF--EKWVNEAKFRIMRPNT-MNKYGAVL-DDFGLETMLDKLMET-YIRPLSKVFFAE 240 (394)
Q Consensus 167 ~Vy~fp-vfspefC~~LIeE~E~f--~~Ws~gs~~~i~rPn~-mN~ygvvL-ddiGl~~~~~~Ll~~-yl~PL~~~LfPe 240 (394)
|...++ +|+++.|+.|.++++.. ..+..+.......... ...+...+ ++. ..+..++.. .+..+++.++..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 81 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQLAKSP---NFYDLFLHPPRILDLVRALLGS 81 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCGCCCH---HHHHHHHTHHHHHHHHHHHHTS
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch---hhHHHHhhHHHHHHHHHHhhCC
Confidence 555664 99999999999999986 2221111211111111 11111111 111 233334433 444555554421
Q ss_pred ccCCCCc--cc-ceeEEEEe-CCCCCC-CcccccC---------CceeEEEeccc-cccCcceEEccccccc-------c
Q 016136 241 VGGSTLD--SH-HGFVVEYG-KDRDVD-LGFHVDD---------SEVTLNVCLGK-QFTGGELFFRGTRCEK-------H 298 (394)
Q Consensus 241 ~~g~~Ld--sh-~~FVVrY~-~~~d~~-L~~H~D~---------SevTLNI~Ln~-dFeGGgl~F~~~~c~~-------h 298 (394)
..+. .+ ..+..-+. ++.+.. ..+|.|. ..+|+.|+|.+ .=+.|.+.+....-.. .
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~ 158 (211)
T PF05721_consen 82 ---DVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEER 158 (211)
T ss_dssp ---SEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCC
T ss_pred ---cchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCccccccc
Confidence 1110 01 11100122 222333 5899992 23788999965 3456667775321110 0
Q ss_pred ccCCC-----------CccceeeecCCCceEEEecCCCCcCCcc-CCcccee
Q 016136 299 VNTGS-----------QTEEIFDYSHVPGRAVLHRGRHRHGARA-TTSGHRV 338 (394)
Q Consensus 299 v~~~~-----------~~~e~~~~~~~~G~AlLHpGrh~Heglp-VTsG~Ry 338 (394)
..... .......+..++|.+|+|.++.+|++.+ .|.+.|-
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 159 FPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-B-SSSTEE
T ss_pred ccccccccccccccccccCceEEeecCCCeEEEEcCCccccCCCCCCcCcCC
Confidence 00000 0134456778999999999999999999 5555564
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.18 E-value=0.00073 Score=62.19 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=62.5
Q ss_pred CCCCCcccccC----CceeEEEeccc-cccCcceEEcc-----ccccccccCCCCccceeeecCCCceEEEecCC-CCcC
Q 016136 260 RDVDLGFHVDD----SEVTLNVCLGK-QFTGGELFFRG-----TRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR-HRHG 328 (394)
Q Consensus 260 ~d~~L~~H~D~----SevTLNI~Ln~-dFeGGgl~F~~-----~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr-h~He 328 (394)
.+.....|+|. ..+|+.+.|+. ||+||-+.+.+ .+.. +.+.+|..|++.|+ .+|+
T Consensus 83 ~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~--------------~~~~~GtVl~~~~~~~~Hg 148 (171)
T PF12851_consen 83 SNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVA--------------FAYQPGTVLIFCAKRELHG 148 (171)
T ss_pred eecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEE--------------EecCCCcEEEEcccceeee
Confidence 35578899997 67899999986 49999999998 5433 46899999999999 9999
Q ss_pred CccCCc-----cceeEEEeecc
Q 016136 329 ARATTS-----GHRVNLLLWCR 345 (394)
Q Consensus 329 glpVTs-----G~RynLV~W~r 345 (394)
..||.+ |+|+-||.|.|
T Consensus 149 vtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 149 VTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCcccCCCCCCCeEEEEEEEeE
Confidence 999998 99999999876
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.99 E-value=0.019 Score=56.13 Aligned_cols=175 Identities=17% Similarity=0.229 Sum_probs=90.6
Q ss_pred CcEEEee-cCCHHHHHHHHHHHHhhhhhh--hcccccccccCCCCcccccccccchHHHHHHHHH-HHhhhhhhhhcc-c
Q 016136 166 PGVFTFE-MLQPRFCELLLAEVENFEKWV--NEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLME-TYIRPLSKVFFA-E 240 (394)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~Ws--~gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~-~yl~PL~~~LfP-e 240 (394)
.|...++ +|+++.|+.|.++++...... ......+. ....+..+.+++.......+.+|+. .-|..+++.|.. +
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAIT-EPGSNAVRSIFEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCccee-cCCCCceEEEecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 4766664 999999999999998764310 00000000 0111222333333333343333332 233333333331 1
Q ss_pred ccCCCCcccceeEEEEeCC-CCCCCcccccCC------------ceeEEEecccc-ccCcceEEcccccccccc-CCCC-
Q 016136 241 VGGSTLDSHHGFVVEYGKD-RDVDLGFHVDDS------------EVTLNVCLGKQ-FTGGELFFRGTRCEKHVN-TGSQ- 304 (394)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~~~-~d~~L~~H~D~S------------evTLNI~Ln~d-FeGGgl~F~~~~c~~hv~-~~~~- 304 (394)
+ .+ .+..++.+ ++ ....+.+|.|.+ .+|+-|+|.+- =+-|.|.|....-...+. ....
T Consensus 107 ~---~l-~~~~l~~k--p~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 107 V---YV-HQSRINMK--PGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred e---EE-Eeeeeeec--CCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 1 11 11223333 43 345778898843 37888999763 444777776421110000 0000
Q ss_pred --------------------------ccceeeecCCCceEEEecCCCCcCCccCCccceeEEEeecchh
Q 016136 305 --------------------------TEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 305 --------------------------~~e~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss 347 (394)
...+..+..++|.+|+|.+..+|++.+-++..+--++.-.|++
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~ 249 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNS 249 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEec
Confidence 0011234569999999999999999988877644444444444
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.81 E-value=0.028 Score=55.58 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.8
Q ss_pred eeeecCCCceEEEecCCCCcCCccCCcc--ceeEEEe-ecchh
Q 016136 308 IFDYSHVPGRAVLHRGRHRHGARATTSG--HRVNLLL-WCRSS 347 (394)
Q Consensus 308 ~~~~~~~~G~AlLHpGrh~HeglpVTsG--~RynLV~-W~rss 347 (394)
.+....++|.+++|.+..+|++-+-++. .|..+++ |+.++
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSF 250 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCC
Confidence 4566779999999999999999999884 3777655 66554
No 17
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=96.27 E-value=0.0057 Score=48.11 Aligned_cols=40 Identities=38% Similarity=0.662 Sum_probs=32.4
Q ss_pred EEEEeCCCCCCCcccccCC--------ceeEEEecc----ccccCcceEEcccc
Q 016136 253 VVEYGKDRDVDLGFHVDDS--------EVTLNVCLG----KQFTGGELFFRGTR 294 (394)
Q Consensus 253 VVrY~~~~d~~L~~H~D~S--------evTLNI~Ln----~dFeGGgl~F~~~~ 294 (394)
.++|..++ .+.+|+|+. .+|+.|+|| ++|+||.++|....
T Consensus 15 ~~~~~~g~--~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 15 FYRYRRGD--FFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred EEEcCCCC--EeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 45565554 999999964 389999999 79999999998753
No 18
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.06 E-value=0.09 Score=47.58 Aligned_cols=154 Identities=19% Similarity=0.309 Sum_probs=75.8
Q ss_pred cEEEee-cCCHHHHHHHHHHHHhhhhhhhccccc--c-cccCC----------CC--cccc--cccccchH---HHHHHH
Q 016136 167 GVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFR--I-MRPNT----------MN--KYGA--VLDDFGLE---TMLDKL 225 (394)
Q Consensus 167 ~Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~~~--i-~rPn~----------mN--~ygv--vLddiGl~---~~~~~L 225 (394)
|+|.+| +|++++.++|++++.....|....... . ..+.. .. +|.. ..+...+. ..+..+
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~ 80 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRL 80 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHH
Confidence 577776 999999999999999644443221110 0 00000 00 1221 22333332 334444
Q ss_pred HHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCc-----eeEEEeccccccCcceEEcccccccccc
Q 016136 226 METYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE-----VTLNVCLGKQFTGGELFFRGTRCEKHVN 300 (394)
Q Consensus 226 l~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTLNI~Ln~dFeGGgl~F~~~~c~~hv~ 300 (394)
++....-.. ..+ +..+| ...|-.|.++. .+++|.|+.+ .-+.|+||.. ....|....
T Consensus 81 ~~~~~~~~~--~~~---~~~~n--~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG~~---~~~~f~~~~------ 142 (194)
T PF13532_consen 81 LERLVEATG--IPP---GWRPN--QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLGSS---RVFRFRNKS------ 142 (194)
T ss_dssp HHHHHHHHT---SH---SS--S--EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEES----EEEEEEECG------
T ss_pred HHHHHHHhc--ccc---CCCCC--EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEccC---ceEEEeecc------
Confidence 443221110 111 12233 45567898876 9999999874 3566666421 111333211
Q ss_pred CCCCccceeeecCCCceEEEecCC---CCcCCccCCcc---------ceeEEE
Q 016136 301 TGSQTEEIFDYSHVPGRAVLHRGR---HRHGARATTSG---------HRVNLL 341 (394)
Q Consensus 301 ~~~~~~e~~~~~~~~G~AlLHpGr---h~HeglpVTsG---------~RynLV 341 (394)
..++.+.+....|..++..|. .+|+..++..+ .|.+|.
T Consensus 143 ---~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislT 192 (194)
T PF13532_consen 143 ---DDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLT 192 (194)
T ss_dssp ---GTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEE
T ss_pred ---CCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEE
Confidence 224667788999999999999 44999999885 587775
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.04 E-value=0.16 Score=48.16 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=60.8
Q ss_pred ceeEEEEeCCCCCCCccccc-CCceeEEEeccccccCcceEEccccccccccC-------CCCccceeeecCCCceEEEe
Q 016136 250 HGFVVEYGKDRDVDLGFHVD-DSEVTLNVCLGKQFTGGELFFRGTRCEKHVNT-------GSQTEEIFDYSHVPGRAVLH 321 (394)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D-~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~-------~~~~~e~~~~~~~~G~AlLH 321 (394)
...++.+.++. .-..|.- +|-++-..+|.-.=.+|.+.|...+....+.. .........+.|++|..|||
T Consensus 97 ~~W~ni~~~Gg--~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGG--THSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCC--ccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 56788888765 5555544 67899999997554688898876543211110 00011233478999999999
Q ss_pred cCCCCcCCccCCccceeEEEee
Q 016136 322 RGRHRHGARATTSGHRVNLLLW 343 (394)
Q Consensus 322 pGrh~HeglpVTsG~RynLV~W 343 (394)
|+.++|++.|-.+...-|-|.|
T Consensus 175 PS~L~H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 175 ESWLRHEVPPNESEEERISVSF 196 (201)
T ss_pred CCCCceecCCCCCCCCEEEEEE
Confidence 9999999999987443344443
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.39 E-value=0.067 Score=44.42 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=45.4
Q ss_pred eEEEEeCCCCCCCcccc-cCCceeEEEeccccccCcceEEccccccccccC-------CCCccceeeecCCCceEEEecC
Q 016136 252 FVVEYGKDRDVDLGFHV-DDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNT-------GSQTEEIFDYSHVPGRAVLHRG 323 (394)
Q Consensus 252 FVVrY~~~~d~~L~~H~-D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~-------~~~~~e~~~~~~~~G~AlLHpG 323 (394)
.++.|+.+. ....|. .+|.++-..+|.-+=..|.+.|...+....... .........+.++.|..||||+
T Consensus 3 W~ni~~~g~--~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 3 WANIYRKGG--YNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEE-TT----EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eEEEeCCCC--ccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 456666664 445554 467889999996444778888875432110000 1122445678999999999999
Q ss_pred CCCcCCccCCcc-ceeEE
Q 016136 324 RHRHGARATTSG-HRVNL 340 (394)
Q Consensus 324 rh~HeglpVTsG-~RynL 340 (394)
.+.|++.|-.+. .|+.+
T Consensus 81 ~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TSEEEE----SSS-EEEE
T ss_pred CCEEeccCcCCCCCEEEE
Confidence 999999999986 46554
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.055 Score=51.36 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=59.6
Q ss_pred eeEEEEeCCCCCCCccccc---CCceeEEEe--c---cccccCcceEEccccccccccCCCCccceeeecCCCceEEEec
Q 016136 251 GFVVEYGKDRDVDLGFHVD---DSEVTLNVC--L---GKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR 322 (394)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D---~SevTLNI~--L---n~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHp 322 (394)
....+|.++. .=..|.| +--|.|.|+ | +.||+|||...-+.+.. +.+ ..-.++.+.|.+++|.
T Consensus 126 pLlLqYgpgD--~NcLHQDLYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR--~QS-----r~~vvpLrqG~g~vFa 196 (236)
T COG3826 126 PLLLQYGPGD--YNCLHQDLYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPR--MQS-----RPTVVPLRQGDGVVFA 196 (236)
T ss_pred ceeEEecCCc--cchhhhhhhhceeeeeeEEEeccCCCCcccCceEEEEecccc--ccc-----CCceeeccCCceEEEE
Confidence 4578999986 5667888 233444443 3 47999999998876543 221 3334678999999984
Q ss_pred CC--------------CCcCCccCCccceeEEEee
Q 016136 323 GR--------------HRHGARATTSGHRVNLLLW 343 (394)
Q Consensus 323 Gr--------------h~HeglpVTsG~RynLV~W 343 (394)
-+ .+||.-.+-||+|+.+-+-
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiI 231 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGII 231 (236)
T ss_pred eecCcccCccCccccchhcchhhhhcccceeeEEE
Confidence 22 7899999999999998543
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=94.39 E-value=0.46 Score=45.67 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=87.7
Q ss_pred cccCCcEEEeecCCHHHHHHHHHHHHhhhh---hhhccccc---ccccCCC-----------Cccccc-c---cccchHH
Q 016136 162 SEPSPGVFTFEMLQPRFCELLLAEVENFEK---WVNEAKFR---IMRPNTM-----------NKYGAV-L---DDFGLET 220 (394)
Q Consensus 162 ~ep~P~Vy~fpvfspefC~~LIeE~E~f~~---Ws~gs~~~---i~rPn~m-----------N~ygvv-L---ddiGl~~ 220 (394)
++..||++.+|=|..+..++|++++..... |-+ -..+ .|.+..+ +.|.-- . +-.....
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAVAAQAPFRH-MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHHHhcCCccc-eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 455799999998899999999999987322 211 0000 1111111 112211 1 1112111
Q ss_pred ---HHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCc-----eeEEEeccccccCcceEEc-
Q 016136 221 ---MLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE-----VTLNVCLGKQFTGGELFFR- 291 (394)
Q Consensus 221 ---~~~~Ll~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTLNI~Ln~dFeGGgl~F~- 291 (394)
.+..|.+.... ..++....+| -..|-.|.++. .+++|.|+.| .-++|+||. ...|.
T Consensus 93 ~P~~l~~L~~~~~~------~~~~~~~~p~--a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~-----~~~F~~ 157 (213)
T PRK15401 93 MPASFLALAQRAAA------AAGFPGFQPD--ACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGL-----PAVFQF 157 (213)
T ss_pred chHHHHHHHHHHHH------HcCCCCCCCC--EEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCC-----CeEEEe
Confidence 34444432211 0111112223 46678899885 9999999644 346677753 33333
Q ss_pred -cccccccccCCCCccceeeecCCCceEEEecCC---CCcCCccCCcc-------ceeEEEe
Q 016136 292 -GTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---HRHGARATTSG-------HRVNLLL 342 (394)
Q Consensus 292 -~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---h~HeglpVTsG-------~RynLV~ 342 (394)
+.. ..+....+....|..||..|. .+|+..++..| .|+||-.
T Consensus 158 ~~~~---------~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTF 210 (213)
T PRK15401 158 GGLK---------RSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTF 210 (213)
T ss_pred cccC---------CCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEe
Confidence 111 112334678899999999988 88999888765 5888853
No 23
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=92.82 E-value=0.22 Score=50.89 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=64.4
Q ss_pred CCCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCC
Q 016136 244 STLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVP 315 (394)
Q Consensus 244 ~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~ 315 (394)
..++.+..| ++|..|. .|.-|.|. .+++|.++|+..=+||.|.|.=..+.. .+ ..+
T Consensus 75 V~V~n~iTf-ikY~kGd--~f~~~~d~~~~~~~n~~~y~LvLyL~~~~~GGktkiyi~~~~~---------tv----I~~ 138 (339)
T PF03336_consen 75 VIVDNTITF-IKYEKGD--FFDNHRDFIKRDSKNCLEYHLVLYLNNPENGGKTKIYIDPNDN---------TV----IST 138 (339)
T ss_pred EEEcceEEE-EEEccCc--chhhhcccceeccCCceEEEEEEEEeccCCCceEEEEECCCCc---------ee----eec
Confidence 345666665 8898876 89999874 359999999999999999988433221 11 355
Q ss_pred ceEEEecCCCCcCCccCCccceeEEE
Q 016136 316 GRAVLHRGRHRHGARATTSGHRVNLL 341 (394)
Q Consensus 316 G~AlLHpGrh~HeglpVTsG~RynLV 341 (394)
+.-+||.-+..|+...|++|++++++
T Consensus 139 ~~DvLFdKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 139 SEDVLFDKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred cccEEEeccccccceEeccCeEEEEE
Confidence 88899999999999999999999954
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=88.56 E-value=1 Score=44.14 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC---
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH--- 325 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh--- 325 (394)
+.+|-+ +.+..+++|+|.+.+||... ++ .|||.... ..+.+.+.|.+|..||.-|.+
T Consensus 120 l~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~------------~g~Wi~V~p~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 120 VSYYPPCPQPELTLGLQSHSDFGAITLLIQ--DD--VEGLQLLK------------DAEWLMVPPISDAILIIIADQTEI 183 (262)
T ss_pred eecCCCCCCcccccCCcCCcCCCeeEEEEe--CC--CCceEEee------------CCeEEECCCCCCcEEEEccHHHHH
Confidence 455644 23456889999999999654 33 35666542 136788999999999999974
Q ss_pred ---------CcCCccCCccceeEEEeecchh
Q 016136 326 ---------RHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 326 ---------~HeglpVTsG~RynLV~W~rss 347 (394)
+|.+.......||.+..|+...
T Consensus 184 ~tng~~~S~~HRVv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 184 ITNGNYKSAQHRAIANANKARLSVATFHDPA 214 (262)
T ss_pred HhCCccccccceEEcCCCCCEEEEEEEEcCC
Confidence 4888765567799999999864
No 25
>PLN02276 gibberellin 20-oxidase
Probab=88.39 E-value=1.4 Score=44.92 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=59.7
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ +....+++|+|-+.+||... | +.|||.... ..+++.+.+.+|..||.-|.
T Consensus 210 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q---d-~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 273 (361)
T PLN02276 210 CNYYPPCQEPELTLGTGPHCDPTSLTILHQ---D-QVGGLQVFV------------DNKWRSVRPRPGALVVNIGDTFMA 273 (361)
T ss_pred eEeCCCCCCcccccCCccccCCceeEEEEe---c-CCCceEEEE------------CCEEEEcCCCCCeEEEEcHHHHHH
Confidence 456644 23446889999999999874 2 456777652 13678899999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-....||.++.|+.-+
T Consensus 274 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~ 304 (361)
T PLN02276 274 LSNGRYKSCLHRAVVNSERERRSLAFFLCPK 304 (361)
T ss_pred HhCCccccccceeecCCCCCEEEEEEEecCC
Confidence 67888765667899999999843
No 26
>PLN02904 oxidoreductase
Probab=87.35 E-value=1.7 Score=44.39 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=59.2
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- ....+++|+|-+.+||... + +|||..... ..+.+.+.+.+|..||.-|.
T Consensus 212 l~~YPp~p~~~~~~g~~~HtD~g~lTlL~q---d--~~GLQV~~~-----------~g~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 212 VNCYPACPEPEIALGMPPHSDFGSLTILLQ---S--SQGLQIMDC-----------NKNWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEec---C--CCeeeEEeC-----------CCCEEECCCCCCeEEEEccHHHHH
Confidence 5677552 2446789999999999864 2 357876531 13578899999999999995
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
-+|.+..-....||.+..|+.-+
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~ 306 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHSLP 306 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeecCC
Confidence 67888755567899999998754
No 27
>PLN02947 oxidoreductase
Probab=87.13 E-value=1.9 Score=44.36 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=58.5
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- ....+++|+|-+.+||... ++ .|||.... ..+++.+.+.+|..||.-|.
T Consensus 229 ln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pga~VVNvGD~Lq~ 292 (374)
T PLN02947 229 VNCYPACPEPELTLGMPPHSDYGFLTLLLQ--DE--VEGLQIMH------------AGRWVTVEPIPGSFVVNVGDHLEI 292 (374)
T ss_pred eecCCCCCCcccccCCCCccCCCceEEEEe--cC--CCCeeEeE------------CCEEEeCCCCCCeEEEEeCceeee
Confidence 3456542 2345789999999999875 22 46777653 13678899999999999997
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-..+.||.+..|+.-+
T Consensus 293 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 293 FSNGRYKSVLHRVRVNSTKPRISVASLHSLP 323 (374)
T ss_pred eeCCEEeccccccccCCCCCEEEEEEEecCC
Confidence 56888655567799999999854
No 28
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=86.98 E-value=1.7 Score=43.17 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=57.2
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ ..+..+++|+|.+.+||... ++ +.|||...... ..+++.+.|.+|..||.-|.
T Consensus 153 ~~~YP~~p~~~~~~g~~~HtD~g~lTlL~q--d~-~~~GLqV~~~~----------~g~Wi~V~p~pga~vVNiGD~l~~ 219 (300)
T PLN02365 153 INKYNFTPETVGSSGVQIHTDSGFLTILQD--DE-NVGGLEVMDPS----------SGEFVPVDPLPGTLLVNLGDVATA 219 (300)
T ss_pred eeecCCCCCccccccccCccCCCceEEEec--CC-CcCceEEEECC----------CCeEEecCCCCCeEEEEhhHHHHH
Confidence 456632 23456889999999998854 21 24677765310 13678899999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecc
Q 016136 325 --------HRHGARATTSGHRVNLLLWCR 345 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~r 345 (394)
-+|.+..-....||.+..|+.
T Consensus 220 ~TNG~~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 220 WSNGRLCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred HhCCceecccceeEcCCCCCEEEEEEEec
Confidence 578877555567999999975
No 29
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=86.62 E-value=2.6 Score=41.51 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=66.6
Q ss_pred ceeEEEEeCCCCCCCcccccCC-----ceeEEEecccc----ccCcceEEccccccccccCCCCccceeeecCCCceEEE
Q 016136 250 HGFVVEYGKDRDVDLGFHVDDS-----EVTLNVCLGKQ----FTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVL 320 (394)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D~S-----evTLNI~Ln~d----FeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlL 320 (394)
.+.|.+|- +.+...-.|+|+- .+|.--+||+. -.||.|+.....- ..+.+++|.-+..|+
T Consensus 144 kAMVAcYP-GNGtgYVrHVDNP~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~----------~~~adieP~fdrLlf 212 (280)
T KOG3710|consen 144 KAMVACYP-GNGTGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGILRIFPEGS----------TTFADIEPKFDRLLF 212 (280)
T ss_pred eEEEEEec-CCCceeeEeccCCCCCceEEEEEEEcccCcceeeccceeEeccCCC----------CcccccCcCCCeEEE
Confidence 57789995 4456666788754 58999999864 4588887654321 234567899999999
Q ss_pred ecCC--CCcCCccCCccceeEEEeecchhHHHH
Q 016136 321 HRGR--HRHGARATTSGHRVNLLLWCRSSVFRE 351 (394)
Q Consensus 321 HpGr--h~HeglpVTsG~RynLV~W~rss~~R~ 351 (394)
|-.. .-|+.+|... +||.+.+|...-.-|.
T Consensus 213 fwSdrrnPhev~Pa~~-tryaitvwyfda~era 244 (280)
T KOG3710|consen 213 FWSDRRNPHEVQPAYA-TRYAITVWYFDAKERA 244 (280)
T ss_pred EEecCCCccccccccc-cceEEEEEEeccccch
Confidence 9887 5599999987 5899999998765554
No 30
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.71 E-value=2.3 Score=43.22 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=58.9
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ +.+..+++|+|-+.+||...=+ ..|||.... ..+.+.+.+.+|..||.-|.
T Consensus 207 l~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~---~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 207 FNMYPPCPRPDKVIGVKPHADGSAFTLLLPDK---DVEGLQFLK------------DGKWYKAPIVPDTILINVGDQMEI 271 (348)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEEecC---CCCceeEeE------------CCeEEECCCCCCcEEEEcChHHHH
Confidence 466744 2345688999999999875411 236677642 13578899999999999887
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-..+.||.+..|+.-+
T Consensus 272 ~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 272 MSNGIYKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred HhCCeecccceEEecCCCCCEEEEEEEecCC
Confidence 56888766667899999999964
No 31
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.66 E-value=2.6 Score=42.85 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=58.6
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC---
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH--- 325 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh--- 325 (394)
+.+|-+- ....+++|+|-+.+||... ++ .|||.... ..+++.+.+.+|..||.-|.+
T Consensus 204 l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wv~V~p~pgalVVNiGD~Le~ 267 (341)
T PLN02984 204 VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DE--VGGLEVMK------------DGEWFNVKPIANTLVVNLGDMMQV 267 (341)
T ss_pred EEeCCCCCCcccccCccCccCCCceEEEEe--CC--CCCeeEee------------CCceEECCCCCCeEEEECChhhhh
Confidence 5667552 2346889999999999875 22 35676541 136788999999999999984
Q ss_pred ---------CcCCc-cCCccceeEEEeecchh
Q 016136 326 ---------RHGAR-ATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 326 ---------~Hegl-pVTsG~RynLV~W~rss 347 (394)
.|.+. +-....||.++.|+...
T Consensus 268 wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 268 ISDDEYKSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred hcCCeeeCCCCccccCCCCCCeEEEEEEecCC
Confidence 49984 44456799999999875
No 32
>PLN02216 protein SRG1
Probab=84.90 E-value=2.4 Score=43.30 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=58.8
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC---
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH--- 325 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh--- 325 (394)
+.+|-+ +....+++|+|-+.+||...-++ -|||.... ..+.+.+.+.+|..||.-|.+
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~---v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 278 (357)
T PLN02216 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE---VEGLQIKK------------DGKWVSVKPLPNALVVNVGDILEI 278 (357)
T ss_pred EeecCCCCCcccccCccCcccCceEEEEEecCC---CCceeEEE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 455644 23346889999999999764222 35676542 136788999999999999983
Q ss_pred ---------CcCCccCCccceeEEEeecchh
Q 016136 326 ---------RHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 326 ---------~HeglpVTsG~RynLV~W~rss 347 (394)
+|.+..-..+.||.++.|+..+
T Consensus 279 ~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~ 309 (357)
T PLN02216 279 ITNGTYRSIEHRGVVNSEKERLSVATFHNTG 309 (357)
T ss_pred hcCCeeeccCceeecCCCCCEEEEEEEecCC
Confidence 4888665667899999999875
No 33
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=84.78 E-value=2.9 Score=42.50 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=59.4
Q ss_pred EEEEeCCC------CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC--
Q 016136 253 VVEYGKDR------DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR-- 324 (394)
Q Consensus 253 VVrY~~~~------d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr-- 324 (394)
+.+|-+-. +..++.|+|-+.+||... + +.|||.... +..+++.+.+.+|..|+.-|.
T Consensus 182 l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~-----------~~g~Wi~Vpp~pga~VVNiGD~l 246 (335)
T PLN02156 182 MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--N--DTAGLQICV-----------KDGTWVDVPPDHSSFFVLVGDTL 246 (335)
T ss_pred EEeCCCCCCCccccccCCCCccCCCceEEEEe--C--CCCceEEEe-----------CCCCEEEccCCCCcEEEEhHHHH
Confidence 56775532 245788999999999865 2 346777642 124688899999999999986
Q ss_pred ----------CCcCCccCCccceeEEEeecchh
Q 016136 325 ----------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 ----------h~HeglpVTsG~RynLV~W~rss 347 (394)
-.|.+..-....||.+..|+.-.
T Consensus 247 ~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 247 QVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred HHHhCCeeeccceeeecCCCCCEEEEEEeecCC
Confidence 57888766667799999999854
No 34
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.06 E-value=3.5 Score=41.92 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=59.6
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... .+.+.+.+.+|..||.-|.
T Consensus 201 l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d--~v~GLQV~~~------------g~Wi~V~p~pgalvVNiGD~L~~ 264 (348)
T PLN02912 201 INYYPPCPQPELTYGLPGHKDANLITVLLQ--D--EVSGLQVFKD------------GKWIAVNPIPNTFIVNLGDQMQV 264 (348)
T ss_pred eeecCCCCChhhcCCcCCCcCCCceEEEEE--C--CCCceEEEEC------------CcEEECCCcCCeEEEEcCHHHHH
Confidence 4566552 2446889999999999865 2 2467777521 3678889999999999887
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+.....+.||.+..|+.-.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 265 ISNDKYKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred HhCCEEEcccccccCCCCCCEEEEEEEecCC
Confidence 57888755567899999999865
No 35
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=83.90 E-value=3 Score=42.54 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016136 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (394)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr------------h~He 328 (394)
+..+++|+|-+.+||... + ..|||..... .+++.+.+.+|..||.-|. -+|.
T Consensus 227 ~~g~~~HTD~g~lTlL~q--d--~v~GLQV~~~------------g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HR 290 (360)
T PLN03178 227 ALGVEAHTDVSALTFILH--N--MVPGLQVLYE------------GKWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHR 290 (360)
T ss_pred ccCcCCccCCCceEEEee--C--CCCceeEeEC------------CEEEEcCCCCCeEEEEccHHHHHHhCCccccccce
Confidence 456889999999999854 2 2467776521 3678899999999999986 5788
Q ss_pred CccCCccceeEEEeecchh
Q 016136 329 ARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (394)
+..-..+.||.++.|+.-.
T Consensus 291 Vv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 291 GLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred eecCCCCCeEEEEEEecCC
Confidence 7544456799999999975
No 36
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=3.5 Score=40.78 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=68.2
Q ss_pred EEEEeCCCCCCCcccccCC------ceeEEEecc---ccccCcce-EEccccccccccCCCCccceeeecCCCceEEEec
Q 016136 253 VVEYGKDRDVDLGFHVDDS------EVTLNVCLG---KQFTGGEL-FFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR 322 (394)
Q Consensus 253 VVrY~~~~d~~L~~H~D~S------evTLNI~Ln---~dFeGGgl-~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHp 322 (394)
+..|.++- .+..|-|+. .+|...+++ +.+-||+| .|..... ..+.++...++.|.=+..++|-
T Consensus 140 ~~~y~~G~--~l~~H~D~~~~~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~-----~~~~~~~~~ti~P~fn~lv~F~ 212 (252)
T COG3751 140 ITVYNPGC--FLLKHDDNGRDKDIRLATYVYYLTREWKPEYGGELRLFHSLQK-----NNTAADSFKTIAPVFNSLVFFK 212 (252)
T ss_pred eeEecCCc--eeEeecccCCCccceEEEEEeccCCCCCcCCCCceeecccccc-----cccccccccccCCCCceEEEEE
Confidence 56687776 899998865 478888887 56889999 6764321 1234567778899999999999
Q ss_pred CCCCcCCccCCc----cceeEEEeecchh
Q 016136 323 GRHRHGARATTS----GHRVNLLLWCRSS 347 (394)
Q Consensus 323 Grh~HeglpVTs----G~RynLV~W~rss 347 (394)
-+-.|...+|-. +.|..+-.|.|..
T Consensus 213 s~~~Hs~h~V~~~~~~~~RlsV~GW~r~~ 241 (252)
T COG3751 213 SRPSHSVHSVEEPYAAADRLSVTGWFRRP 241 (252)
T ss_pred ecCCccceeccccccccceEEEeeEEecC
Confidence 998888877765 8899999999865
No 37
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.29 E-value=3.1 Score=42.18 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=60.9
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... ...+++.+.+.+|..||.-|.
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d--~v~GLQV~~~----------~~g~Wi~V~p~pg~~vVNiGD~L~~ 262 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--D--DVGGLQISRR----------SDGEWIPVKPIPDAFIINIGNCMQV 262 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEec--C--CCCceEEeec----------CCCeEEEccCCCCeEEEEhHHHHHH
Confidence 5667542 3446889999999999654 2 2467876421 124678899999999999886
Q ss_pred --------CCcCCccCCccceeEEEeecchhH
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (394)
.+|.+.......||.++.|+..+.
T Consensus 263 ~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~ 294 (345)
T PLN02750 263 WTNDLYWSAEHRVVVNSQKERFSIPFFFFPSH 294 (345)
T ss_pred HhCCeeecccceeccCCCCCEEEEEEeecCCC
Confidence 678887666677999999998763
No 38
>PLN02485 oxidoreductase
Probab=82.96 E-value=1.8 Score=43.36 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=55.3
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016136 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (394)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr------------h~He 328 (394)
+..+++|+|-+.+||... ++ .-|||..... ..+.+.+.+.+|..||.-|. -+|.
T Consensus 204 ~~g~~~HTD~g~lTlL~q--d~-~~~GLqV~~~-----------~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HR 269 (329)
T PLN02485 204 DIGCGAHTDYGLLTLVNQ--DD-DITALQVRNL-----------SGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHR 269 (329)
T ss_pred CcccccccCCCeEEEEec--cC-CCCeeeEEcC-----------CCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCce
Confidence 346889999999999643 11 2367776531 13678889999999999886 4599
Q ss_pred CccCCccceeEEEeecchhH
Q 016136 329 ARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 329 glpVTsG~RynLV~W~rss~ 348 (394)
+..-....||.++.|+....
T Consensus 270 Vv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 270 VINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred ecCCCCCCeEEEEEEecCCC
Confidence 98665667999999998753
No 39
>PTZ00273 oxidase reductase; Provisional
Probab=82.53 E-value=3.1 Score=41.52 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=58.5
Q ss_pred EEEEeCC-----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016136 253 VVEYGKD-----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (394)
Q Consensus 253 VVrY~~~-----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr--- 324 (394)
+.+|-+. .+..+++|+|-+.+||... + ..|||..... ..+.+.+.+.+|..||.-|.
T Consensus 181 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d--~~~GLqV~~~-----------~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 181 MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--D--SVGGLQVRNL-----------SGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eeecCCCCCccccCcccccccCCCeEEEEec--C--CCCceEEECC-----------CCCEEeCCCCCCeEEEEHHHHHH
Confidence 5667553 2345789999999999864 2 2467776531 13577889999999999884
Q ss_pred ---------CCcCCccCCccceeEEEeecchhH
Q 016136 325 ---------HRHGARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss~ 348 (394)
-+|.+.. ....||.++.|++-+.
T Consensus 246 ~~TnG~~kSt~HRVv~-~~~~R~Si~~F~~p~~ 277 (320)
T PTZ00273 246 MWSNGRYRSTPHRVVN-TGVERYSMPFFCEPNP 277 (320)
T ss_pred HHHCCeeeCCCccccC-CCCCeEEEEEEEcCCC
Confidence 6788863 3467999999999763
No 40
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=82.51 E-value=3.2 Score=42.52 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=60.1
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ +.+..++.|+|.+.+||... + +.|||...... .++++.+.+.+|..||.-|.
T Consensus 199 l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~~~----------~~~Wi~Vpp~pgalVVNiGD~L~~ 264 (358)
T PLN02515 199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--D--QVGGLQATRDG----------GKTWITVQPVEGAFVVNLGDHGHY 264 (358)
T ss_pred EeecCCCCChhhccCCCCCCCCCeEEEEec--C--CCCceEEEECC----------CCeEEECCCCCCeEEEEccHHHHH
Confidence 455654 22346889999999999865 2 24678764321 13588899999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecchhH
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (394)
.+|.+..-..+.||.++.|+.-+.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~ 296 (358)
T PLN02515 265 LSNGRFKNADHQAVVNSNCSRLSIATFQNPAP 296 (358)
T ss_pred HhCCeeeeecceEECCCCCCEEEEEEEecCCC
Confidence 568876666678999999999763
No 41
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=81.13 E-value=3.4 Score=42.30 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=59.1
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- ....+++|+|-+.+||... ++ .|||..... ..+++.+.+.+|..||.-|.
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~--v~GLQV~~~-----------~~~Wi~V~p~pgalVVNiGD~lq~ 278 (358)
T PLN02254 214 LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SN--TSGLQVFRE-----------GVGWVTVPPVPGSLVVNVGDLLHI 278 (358)
T ss_pred EecCCCCCCcccccCcCCccCCCcEEEEec--CC--CCCceEECC-----------CCEEEEcccCCCCEEEEhHHHHHH
Confidence 5667552 3446889999999999875 32 366766421 13578899999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-....||.+..|+.-.
T Consensus 279 ~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~ 309 (358)
T PLN02254 279 LSNGRFPSVLHRAVVNKTRHRISVAYFYGPP 309 (358)
T ss_pred HhCCeeccccceeecCCCCCEEEEEEEecCC
Confidence 67888654456799999999854
No 42
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=81.12 E-value=4.6 Score=40.63 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=57.7
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- ....+++|+|-+.+||...= + +.|||.... ..+.+.+.+.+|..||.-|.
T Consensus 162 l~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd--~-~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~l~~ 226 (321)
T PLN02299 162 VSNYPPCPKPDLVKGLRAHTDAGGIILLFQD--D-KVSGLQLLK------------DGEWVDVPPMRHSIVVNLGDQLEV 226 (321)
T ss_pred eEecCCCCCcccccCccCccCCCeEEEEEec--C-CCCCcCccc------------CCeEEECCCCCCeEEEEeCHHHHH
Confidence 5677652 23357799999999997531 1 235565431 13677889999999999987
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
-+|.+..-..+.||.+..|+.-+
T Consensus 227 ~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 227 ITNGKYKSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred HhCCceecccceeecCCCCCEEEEEEEecCC
Confidence 56888755567899999999864
No 43
>PLN02704 flavonol synthase
Probab=80.84 E-value=4.6 Score=40.75 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016136 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (394)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr------------h~He 328 (394)
+-.++.|+|-+.+||... ++ .|||.... ..+.+.+.+.+|..||.-|. -+|.
T Consensus 215 ~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HR 278 (335)
T PLN02704 215 ALGVVAHTDMSAITILVP--NE--VQGLQVFR------------DDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVLHR 278 (335)
T ss_pred ccCccCccCCcceEEEec--CC--CCceeEeE------------CCEEEeCCCCCCeEEEEechHHHHHhCCeeecccce
Confidence 345889999999999875 33 55777642 13578889999999999997 5688
Q ss_pred CccCCccceeEEEeecchh
Q 016136 329 ARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (394)
+..--...||.++.|+.-+
T Consensus 279 Vv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 279 TTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred eecCCCCCeEEEEEEecCC
Confidence 8644456799999999865
No 44
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=80.12 E-value=2.6 Score=39.62 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEEeCCCCC-----CCcccccCCceeEEEecc-ccccCcceEEccccccccccCCCCccceeeecCCCceEEEec-CCC
Q 016136 253 VVEYGKDRDV-----DLGFHVDDSEVTLNVCLG-KQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR-GRH 325 (394)
Q Consensus 253 VVrY~~~~d~-----~L~~H~D~SevTLNI~Ln-~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHp-Grh 325 (394)
-+|+.+..+. -=+.|.|...+++..+++ ..-+||++......-. .-...--..+|.+++.- .+.
T Consensus 100 q~Ri~a~~~~~g~ptPEGiH~DG~d~v~~~li~r~Ni~GG~s~i~~~~~~---------~~~~~~l~~p~d~l~~~D~~~ 170 (195)
T PF10014_consen 100 QIRIIATPDEPGEPTPEGIHRDGVDFVFIHLINRHNIEGGESQIYDNDKE---------ILFFFTLLEPGDTLLVDDRRV 170 (195)
T ss_dssp EEEEETTTS--B--STTSSB--SSSEEEEEEEEEESEEE--EEEEETTSS---------EEEEE---STTEEEEEETTTE
T ss_pred EEEEEEecCccCCcCCCCccCCCCCEEEEEEEcCCCccCceEEEEeCCCC---------cceEEEecCCCCEEEEeCCcc
Confidence 5666654333 357999999999998887 4679999998643211 11222345889998888 669
Q ss_pred CcCCccCCc------cceeEEEee
Q 016136 326 RHGARATTS------GHRVNLLLW 343 (394)
Q Consensus 326 ~HeglpVTs------G~RynLV~W 343 (394)
+|++.||++ |.|-+||+-
T Consensus 171 ~H~vtpI~~~~~~~~g~RDvlvit 194 (195)
T PF10014_consen 171 WHYVTPIRPVDPSRPGYRDVLVIT 194 (195)
T ss_dssp EEEE--EEES-TT---EEEEEEEE
T ss_pred eECCCceecCCCCCcEEEEEEEEe
Confidence 999999873 888888864
No 45
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=78.09 E-value=7.6 Score=38.87 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=57.8
Q ss_pred EEEEeCCC----CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCc-eEEEecCC---
Q 016136 253 VVEYGKDR----DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPG-RAVLHRGR--- 324 (394)
Q Consensus 253 VVrY~~~~----d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G-~AlLHpGr--- 324 (394)
+.+|.+-. ...+++|+|-+.+||...-+ .-|||.... ..+.+.+.+.+| ..||.-|.
T Consensus 157 l~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~---~v~GLqV~~------------~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 157 VAKYPECPRPELVRGLREHTDAGGIILLLQDD---QVPGLEFLK------------DGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred eEcCCCCCCcccccCccCccCCCeEEEEEecC---CCCceEecc------------CCeEEECCCCCCCEEEEEehHHHH
Confidence 67775532 23578999999999876532 135676531 135777888885 77788776
Q ss_pred ---------CCcCCccCCccceeEEEeecchhH
Q 016136 325 ---------HRHGARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss~ 348 (394)
.+|.+.....+.||.+..|+....
T Consensus 222 ~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~ 254 (303)
T PLN02403 222 VLSNGRYKSTLHRVMADKNGSRLSIATFYNPAG 254 (303)
T ss_pred HHhCCeeecccceeecCCCCCEEEEEEEEcCCC
Confidence 578888666778999999999753
No 46
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=78.02 E-value=7.5 Score=39.75 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=57.3
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ +....+++|+|-+.+||...- ++ -|||.... ..+.+.+.+.+|..||.-|.
T Consensus 217 l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~--v~GLQV~~------------~g~W~~V~p~pgalVVNiGD~l~~ 281 (362)
T PLN02393 217 VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DN--VAGLQVRR------------DDAWITVKPVPDAFIVNIGDQIQV 281 (362)
T ss_pred eeecCCCCCcccccccccccCCceEEEEeeC-CC--CCcceeeE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 456743 224468899999999997641 11 25666542 13578889999999999997
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-....||.++.|+.-+
T Consensus 282 ~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 282 LSNAIYKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred hcCCeeeccceecccCCCCCEEEEEEEecCC
Confidence 46888644455799999999875
No 47
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=77.22 E-value=7.7 Score=39.19 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- .+..++.|+|-+.+||... ++ ..|||.... ..+.+.+.+.+|..||.-|.
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQ-QVAGLQVLK------------DGKWVAVNPHPGAFVINIGDQLQA 258 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cC-CcCceEeec------------CCeEEeccCCCCeEEEechhHHHH
Confidence 4566553 2345889999999999653 21 235666542 13678899999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+.......||.+..|+.-.
T Consensus 259 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 259 LSNGRYKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred HhCCeeeccCcccccCCCCCEEEEEEEecCC
Confidence 67888655567799999999854
No 48
>PLN02997 flavonol synthase
Probab=76.25 E-value=8.9 Score=38.74 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=57.7
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+- ....+++|+|-+.+||... ++ -|||..... .+.+.+.+.+|..||.-|.
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~--v~GLQV~~~------------g~Wi~V~p~pgalvVNiGD~Le~ 250 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIP--NE--VPGLQAFKD------------EQWLDLNYINSAVVVIIGDQLMR 250 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEec--CC--CCCEEEeEC------------CcEEECCCCCCeEEEEechHHHH
Confidence 4556542 2346889999999999864 22 356766421 3577889999999999996
Q ss_pred --------CCcCCccCCccceeEEEeecchhH
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (394)
.+|.+..-....||.+..|+.-+.
T Consensus 251 ~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 251 MTNGRFKNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred HhCCccccccceeeCCCCCCEEEEEEEecCCC
Confidence 458886444456999999998763
No 49
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.02 E-value=9.1 Score=39.19 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=57.1
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|-+ +....+++|+|-+.+||...=+. .-|||..... .+++.+.+.+|..|+.-|.
T Consensus 215 ~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~--~v~GLQV~~~------------g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 215 MNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKG--SCVGLQILKD------------NTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred eecCCCCCCcccccCccCccCCceeEEEEeCCC--CCCCeeeeeC------------CEEEeCCCCCCeEEEEccchhhh
Confidence 455643 23346789999999999864111 1245665421 3677889999999999996
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-....||.+..|+..+
T Consensus 281 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 311 (361)
T PLN02758 281 LTNGKYKSVEHRAVTNKEKDRLSIVTFYAPS 311 (361)
T ss_pred hcCCeeecccceeecCCCCCEEEEEEEecCC
Confidence 56888755456799999999854
No 50
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.65 E-value=6 Score=37.72 Aligned_cols=96 Identities=23% Similarity=0.368 Sum_probs=60.5
Q ss_pred cCCcEEEee-cCCHHHHHHHHHHHHhhh--hhhhcccccccccCCCCcccccccccchH-HHHHHHHHHHhhhhhhhhcc
Q 016136 164 PSPGVFTFE-MLQPRFCELLLAEVENFE--KWVNEAKFRIMRPNTMNKYGAVLDDFGLE-TMLDKLMETYIRPLSKVFFA 239 (394)
Q Consensus 164 p~P~Vy~fp-vfspefC~~LIeE~E~f~--~Ws~gs~~~i~rPn~mN~ygvvLddiGl~-~~~~~Ll~~yl~PL~~~LfP 239 (394)
.+|.++-+| +.++++=..++.-+|+-- +|..-. .+-..|||=|...-||- ..+-..+..|+.-|...
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~------NRRLqNyGGvvh~~glipeelP~wLq~~v~kinnl--- 80 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA------NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNL--- 80 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH------hhhhhhcCCccccCCcCccccCHHHHHHHHHhhcc---
Confidence 467777777 899999888888888753 452212 22345788888888873 22222222333333211
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccCCc
Q 016136 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE 272 (394)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se 272 (394)
++.++ ..+|..|-+|-||+ .+-+|.|.--
T Consensus 81 glF~s--~~NHVLVNeY~pgq--GImPHtDGPa 109 (224)
T KOG3200|consen 81 GLFKS--PANHVLVNEYLPGQ--GIMPHTDGPA 109 (224)
T ss_pred cccCC--CcceeEeecccCCC--CcCcCCCCCc
Confidence 22223 34578899999998 8999999764
No 51
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=72.10 E-value=7.8 Score=39.12 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred EEEEeCCC-----CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016136 253 VVEYGKDR-----DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (394)
Q Consensus 253 VVrY~~~~-----d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr--- 324 (394)
+.+|-+-. +-.+++|+|-+.+||... ++ -|||......- ....+.+.+.+.+|..||.-|.
T Consensus 186 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~~~~-------~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 186 LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DG--VMGLQICKDKN-------AMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeCCCCCCcccCccccccccCCCeEEEEee--CC--CCceEEecCCC-------CCCCcEEECCCCCCeEEEEHHHHHH
Confidence 56776532 335789999999999854 33 46677642110 0124688899999999999987
Q ss_pred ---------CCcCCccCCccceeEEEeecchh
Q 016136 325 ---------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+. +.+..||.+..|+.-.
T Consensus 255 ~wTng~~kSt~HRVv-~~~~~R~Sia~F~~p~ 285 (332)
T PLN03002 255 RWSNGFFKSTLHRVL-GNGQERYSIPFFVEPN 285 (332)
T ss_pred HHhCCeeECcCCeec-CCCCCeeEEEEEecCC
Confidence 458886 3356799999999865
No 52
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=71.38 E-value=9.2 Score=38.70 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=60.0
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016136 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (394)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr---- 324 (394)
+.+|.+ +.-..+++|.|.|-+|+.+.-+ +=|||.+.. +...++.+.|.+|.-|+.-|.
T Consensus 180 ~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~---~V~GLQv~~-----------~dg~Wi~V~P~p~a~vVNiGD~l~~ 245 (322)
T KOG0143|consen 180 LNYYPPCPEPELTLGLGAHTDKSFLTILLQDD---DVGGLQVFT-----------KDGKWIDVPPIPGAFVVNIGDMLQI 245 (322)
T ss_pred EeecCCCcCccccccccCccCcCceEEEEccC---CcCceEEEe-----------cCCeEEECCCCCCCEEEEcccHHhH
Confidence 567755 4445688999999988876422 345565553 114678889999999999865
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 016136 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (394)
.+|.+..-..+.||.+..|+-.+
T Consensus 246 lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~ 276 (322)
T KOG0143|consen 246 LSNGRYKSVLHRVVVNGEKERISVAFFVFPP 276 (322)
T ss_pred hhCCcccceEEEEEeCCCCceEEEEEEecCC
Confidence 66999988888899999988744
No 53
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=70.50 E-value=12 Score=34.65 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=41.5
Q ss_pred ceeEEEEeCCCCCCCcccccCCce-----eEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC
Q 016136 250 HGFVVEYGKDRDVDLGFHVDDSEV-----TLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR 324 (394)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D~Sev-----TLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr 324 (394)
...|-.|.++ ..+++|.|+++. -+.|+||. .+.|.= +.. ...+....+....|..||-.|.
T Consensus 96 ~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~-----~r~F~~-~~~------~~~~~~~~l~L~sGsllvM~G~ 161 (169)
T TIGR00568 96 ACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGL-----PAIFLI-GGL------KRNDPPKRLRLHSGDVVIMGGE 161 (169)
T ss_pred EEEEEeecCC--CccccccccccccCCCCEEEEeCCC-----CEEEEe-cCC------cCCCceEEEEeCCCCEEEECCc
Confidence 4567889888 489999998765 35677653 222321 110 0112345577899999999988
Q ss_pred ---CCcC
Q 016136 325 ---HRHG 328 (394)
Q Consensus 325 ---h~He 328 (394)
.+||
T Consensus 162 sR~~~Hg 168 (169)
T TIGR00568 162 SRLAFHG 168 (169)
T ss_pred hhccccC
Confidence 5555
No 54
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=70.22 E-value=9.7 Score=34.60 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=47.5
Q ss_pred cceeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcC
Q 016136 249 HHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHG 328 (394)
Q Consensus 249 h~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh~He 328 (394)
...++.+-.|+. .+.+|+|.+...+.+-|+=.=--++++|.-.+ + .+.-+.|.++++-.+..|+
T Consensus 80 ~~~~~s~l~pg~--~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~------------~--~~~w~~G~~~~fD~s~~H~ 143 (163)
T PF05118_consen 80 GRVRFSRLPPGT--HIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGG------------E--TRHWREGECWVFDDSFEHE 143 (163)
T ss_dssp EEEEEEEEECTE--EEEEE-SS-TTEEEEEEEEC--STTEEEEETT------------E--EEB--CTEEEEE-TTS-EE
T ss_pred hhEEEEEECCCC--EECCeeCCCCcceEEEEEEEcCCCCeEEEECC------------e--EEEeccCcEEEEeCCEEEE
Confidence 345556666665 99999998765444444321102445554211 1 2456899999999999999
Q ss_pred CccCCccceeEEEe
Q 016136 329 ARATTSGHRVNLLL 342 (394)
Q Consensus 329 glpVTsG~RynLV~ 342 (394)
+.--....|++|++
T Consensus 144 ~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 144 VWNNGDEDRVVLIV 157 (163)
T ss_dssp EEESSSS-EEEEEE
T ss_pred EEeCCCCCEEEEEE
Confidence 99999999999986
No 55
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.19 E-value=26 Score=35.63 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=59.7
Q ss_pred cceeEEEEeCCCCCC----CcccccCC--------ceeEEEeccc-cccCcceEEcccccccc---ccCCC-C--cccee
Q 016136 249 HHGFVVEYGKDRDVD----LGFHVDDS--------EVTLNVCLGK-QFTGGELFFRGTRCEKH---VNTGS-Q--TEEIF 309 (394)
Q Consensus 249 h~~FVVrY~~~~d~~----L~~H~D~S--------evTLNI~Ln~-dFeGGgl~F~~~~c~~h---v~~~~-~--~~e~~ 309 (394)
++.+|..=.++.+.. -.+|.|-. .|.+-|+|-+ .=+-|.|+|....-+-. ...+. . ....+
T Consensus 114 ~~~~v~~~~~~~~~p~~~~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~ 193 (299)
T COG5285 114 RHGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAV 193 (299)
T ss_pred cCCeEEEecCCCCCCcccccccccccccccCCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcce
Confidence 356666666666555 88999932 3555666643 23345566653221100 00000 0 02256
Q ss_pred eecCCCceEEEecCCCCcCCccCCccc--eeEEEeecchh
Q 016136 310 DYSHVPGRAVLHRGRHRHGARATTSGH--RVNLLLWCRSS 347 (394)
Q Consensus 310 ~~~~~~G~AlLHpGrh~HeglpVTsG~--RynLV~W~rss 347 (394)
.+...+|.+|+|.|++.|+|..=++|. +.+.+-|+.+-
T Consensus 194 pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 194 PVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred eeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeecc
Confidence 678899999999999999999988885 34445555554
No 56
>PHA02866 Hypothetical protein; Provisional
Probab=64.75 E-value=71 Score=32.84 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCcEEEeecCCHHHHHHHHHHHHhh-hhhhhcccccccccCCCCcccccccccchHHHHHHHHHHHhhhhhhhhcccccC
Q 016136 165 SPGVFTFEMLQPRFCELLLAEVENF-EKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVGG 243 (394)
Q Consensus 165 ~P~Vy~fpvfspefC~~LIeE~E~f-~~Ws~gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~PL~~~LfPe~~g 243 (394)
..||.+...|..+|= .+.+++... ..|-. ++ +-| +.+.-.+..--.+--+...++.+ .++-+.+.-+|.+ .
T Consensus 5 ~~~~~~~~~f~~~f~-~i~~~~~~m~~~w~~-s~--i~~--~~~~i~~~~~~~~k~k~~~~v~~-~v~~~~~~~~~~~-d 76 (333)
T PHA02866 5 TDGVLRLKSFRDDFK-GIKEELKFMLNSWED-SD--ILR--HRQFIPCEILVLEKSERTKQVFG-AVKRVLASSLTDY-D 76 (333)
T ss_pred eCCeEEEEEhhhhhh-hHHHHHHHHHhccch-hh--hhh--hccCCceeeeehhhhhhhHHHHH-HHHHHHhccCCCc-c
Confidence 468888899998854 344443322 23622 22 211 11111111100111122233333 2223333334442 2
Q ss_pred CCCcccceeEEEEeCCCCCCCccccc----CC----ceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCC
Q 016136 244 STLDSHHGFVVEYGKDRDVDLGFHVD----DS----EVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVP 315 (394)
Q Consensus 244 ~~Ldsh~~FVVrY~~~~d~~L~~H~D----~S----evTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~ 315 (394)
.-++.|.. +|+|..|- +|.-|+| ++ +++|.++|+.-=+||++.++-..++. ...
T Consensus 77 v~v~~~~t-~vk~~kg~--~fdn~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~---------------i~~ 138 (333)
T PHA02866 77 VYVCEHLT-IVKCFKGV--GFDNRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTV---------------IST 138 (333)
T ss_pred EEEeeeEE-EEEEeccc--ccccceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCce---------------Eee
Confidence 23455655 58887765 6666665 33 69999999999999999998444331 233
Q ss_pred ceEEEecCCCCcCCccCCccceeEEE
Q 016136 316 GRAVLHRGRHRHGARATTSGHRVNLL 341 (394)
Q Consensus 316 G~AlLHpGrh~HeglpVTsG~RynLV 341 (394)
-.=+||--+..|+..-|.+|++++++
T Consensus 139 ~~DvLFDKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 139 ADDFLLEKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred ccceeeeccccccceeeecCcEEEEE
Confidence 45688999999999999999997664
No 57
>PHA02923 hypothetical protein; Provisional
Probab=51.15 E-value=35 Score=34.85 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=59.4
Q ss_pred CcccceeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC
Q 016136 246 LDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH 325 (394)
Q Consensus 246 Ldsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh 325 (394)
.+.+-. +++|.++.+-.+ .| |+=++.|.++|+..=+||.+.|...+-. ...-.=+||--+.
T Consensus 65 V~n~iT-~ikYekgd~~~l-~~-~~~~y~LvLyL~~p~~GGt~i~~~~~t~----------------i~~~~DvLFdKsl 125 (315)
T PHA02923 65 VSSTIS-FIKYNPFNDTTL-TD-DNMGYYLVIYLNRPKSGKTLIYPTPETV----------------ITSSEDIMFSKSL 125 (315)
T ss_pred EeceEE-EEEEcCCCccee-ec-CceEEEEEEEEeccCCCCeEEEecCCCe----------------Eeeccceeeeccc
Confidence 344545 589999986455 34 6678999999998888999998865421 2334568899999
Q ss_pred CcCCccCCccceeEEEe
Q 016136 326 RHGARATTSGHRVNLLL 342 (394)
Q Consensus 326 ~HeglpVTsG~RynLV~ 342 (394)
-|+-.-|.+|++.+++.
T Consensus 126 ~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 126 NFRFENVKRGYKLVMCS 142 (315)
T ss_pred ccceeeeecCcEEEEEE
Confidence 99999999999998655
No 58
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=49.91 E-value=32 Score=34.32 Aligned_cols=126 Identities=18% Similarity=0.261 Sum_probs=48.8
Q ss_pred cEEEeecCCHHHHHHHHHHHHhhhh-----hhhccc----ccccccCCCCccccccccc----------chHHH----HH
Q 016136 167 GVFTFEMLQPRFCELLLAEVENFEK-----WVNEAK----FRIMRPNTMNKYGAVLDDF----------GLETM----LD 223 (394)
Q Consensus 167 ~Vy~fpvfspefC~~LIeE~E~f~~-----Ws~gs~----~~i~rPn~mN~ygvvLddi----------Gl~~~----~~ 223 (394)
-|---.||.+++++.|-+.++.-+. +..... -.+.+|-+..+|-.+-..- +++.. +.
T Consensus 32 ~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY~~~~~~~~~~~~~~~~~pl~e~~~~~l~ 111 (266)
T PF10637_consen 32 EIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRYLYLDPKSEASINSDNKSPLPELPPFLLR 111 (266)
T ss_dssp EEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-EEE-SSSHHHHHHHH---------SHHH
T ss_pred eEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhheeEeCCcccccccccccccccchhHHHHH
Confidence 4556679999999999998875432 000000 1223455555555542222 12111 11
Q ss_pred HHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCccccc--CCceeEEEecc-c------cccCcceEEcc
Q 016136 224 KLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVD--DSEVTLNVCLG-K------QFTGGELFFRG 292 (394)
Q Consensus 224 ~Ll~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D--~SevTLNI~Ln-~------dFeGGgl~F~~ 292 (394)
.+..-+-+....++.-.+.|..+-++...+-|+.+|.|=-|.-..| +..+-+++||+ . ++-|-++|..+
T Consensus 112 ~l~~lf~S~aF~~~L~~~TgL~l~~~~~~~RRfr~G~dYTLa~~~~~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~ 189 (266)
T PF10637_consen 112 ELMDLFKSEAFFKWLSNLTGLDLTSCQIEARRFRPGLDYTLATDEDEEEPRLDVTLCLTPSKGWESGEVGGYECYMAG 189 (266)
T ss_dssp HHHHHHHSHHHHHHHHHHHSEEE-EEEEEEEEE-TTT-EE--B---EEEEEEEEEEEE---S-TTTTTT---EEEEE-
T ss_pred HHHHHcCCHHHHHHHHHHHCCCCccCceEEEEccCCCCeEEecCCCCCceEEEEEEEecCCCCCCCCccccEEEEEcC
Confidence 1111111111111111222333345556677888886555555555 33345555553 2 67777888744
No 59
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=47.95 E-value=31 Score=35.17 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=51.7
Q ss_pred ccccc-ccccchHHHHHHHHHHHhhhhhhhhcccccCCCCc-ccceeEEEEeCCCCCCCcccccCCc------eeEEEec
Q 016136 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLD-SHHGFVVEYGKDRDVDLGFHVDDSE------VTLNVCL 279 (394)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~PL~~~LfPe~~g~~Ld-sh~~FVVrY~~~~d~~L~~H~D~Se------vTLNI~L 279 (394)
.||++ +|++.-...-+..+.+.+.|+...+|...--.+=+ +|. -.-|... .|++|+|++- +-+.=||
T Consensus 136 ~YGi~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~--DTAYtkl---~lg~HTD~TYF~~~~GiQvfHCl 210 (371)
T KOG3889|consen 136 KYGIIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYE--DTAYTKL---ELGPHTDGTYFDQTPGIQVFHCL 210 (371)
T ss_pred heeEEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccc--cccceee---eecccCCCceeccCCCceEEEee
Confidence 48887 45555444455555668889999998653111101 111 1224433 7999999874 5677788
Q ss_pred cccccCcceEEcc
Q 016136 280 GKQFTGGELFFRG 292 (394)
Q Consensus 280 n~dFeGGgl~F~~ 292 (394)
.-.=+||+++|-+
T Consensus 211 ~h~gtGG~t~lVD 223 (371)
T KOG3889|consen 211 THAGTGGDTVLVD 223 (371)
T ss_pred cccCCCCceEEEe
Confidence 8888999999964
No 60
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.42 E-value=6.7 Score=35.14 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=21.1
Q ss_pred cCCccceeEEEeecchhHHHHHHhhhccccccccccch
Q 016136 331 ATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFR 368 (394)
Q Consensus 331 pVTsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~ 368 (394)
-+++|.+ |.|+|+=|-.=+ +=.+|||-|..
T Consensus 21 ~~~n~~~-ifvlF~gskd~~-------tGqSWCPdCV~ 50 (128)
T KOG3425|consen 21 NVENGKT-IFVLFLGSKDDT-------TGQSWCPDCVA 50 (128)
T ss_pred HHhCCce-EEEEEecccCCC-------CCCcCCchHHH
Confidence 3568888 999998775222 22399999953
No 61
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=44.63 E-value=4.3e+02 Score=28.45 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=102.8
Q ss_pred cccCCcEEEeecCCHHHHHHHHHHHHhhhhhhhcccccccccCCCCccccc--ccccchHH---HHHHHHHHHhhhhhhh
Q 016136 162 SEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAV--LDDFGLET---MLDKLMETYIRPLSKV 236 (394)
Q Consensus 162 ~ep~P~Vy~fpvfspefC~~LIeE~E~f~~Ws~gs~~~i~rPn~mN~ygvv--LddiGl~~---~~~~Ll~~yl~PL~~~ 236 (394)
..|.+-+..=+++++..-+..-.|++++..|.- ...++-|- ++-|=+ ++.+.+-. +=+-|++++-.-+
T Consensus 33 ngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~-k~tDlyr~---~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~--- 105 (476)
T KOG3844|consen 33 NGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTE-KETDLYRV---LQTGDLANLEGLEFPALFSFRDSLYKEARGEI--- 105 (476)
T ss_pred cCCCcceeeeccCCHHHHHHHHHHHhhccchhh-hcchhhhe---eccccccccccccchhHHHHHHHHHHHHHHHH---
Confidence 446777666689998888777778877766632 22232221 122212 22222211 1122222222221
Q ss_pred hcccccCCCCc-ccceeEEEEeCCCCCCCcccccCCc---eeEEEecc--c---cccCcceEEccccccccccCCCCccc
Q 016136 237 FFAEVGGSTLD-SHHGFVVEYGKDRDVDLGFHVDDSE---VTLNVCLG--K---QFTGGELFFRGTRCEKHVNTGSQTEE 307 (394)
Q Consensus 237 LfPe~~g~~Ld-sh~~FVVrY~~~~d~~L~~H~D~Se---vTLNI~Ln--~---dFeGGgl~F~~~~c~~hv~~~~~~~e 307 (394)
..+.|..+- ....++-+|..+. +|=.|-|--+ +++-.+|- + +| ||+|+.....|.- .+ + .-
T Consensus 106 --q~vtg~~s~sk~Dms~s~Y~kgd--~LL~HDD~ietRriaFilYL~~~Dwds~~-GG~L~Lf~~d~~~---~P-~-s~ 175 (476)
T KOG3844|consen 106 --QDVTGGLSTSKIDMSGSYYRKGD--HLLCHDDVIETRRIAFILYLVDPDWDSEY-GGELRLFPDDCPS---QP-K-SV 175 (476)
T ss_pred --HhccCccccceeeeceeeeeccc--eeccccccccceEEEEEEEecCccccccc-CceeEeccccccc---Cc-c-ch
Confidence 122222111 2256688898776 8999999543 89999994 2 46 9999998887742 11 1 12
Q ss_pred eeeecCCCceEEEecCC--CCcCCccCCccc-eeEEEeecchhHHHHHH
Q 016136 308 IFDYSHVPGRAVLHRGR--HRHGARATTSGH-RVNLLLWCRSSVFREMK 353 (394)
Q Consensus 308 ~~~~~~~~G~AlLHpGr--h~HeglpVTsG~-RynLV~W~rss~~R~~~ 353 (394)
+..+.|.-.+.++|.=. -.|.+--|.+-. |..+-+|......=+..
T Consensus 176 ~asl~P~~Nql~fFeVsp~SFH~V~Ev~sde~RlSIsGWfH~p~~~ePg 224 (476)
T KOG3844|consen 176 AASLEPQWNQLVFFEVSPISFHDVEEVLSDEPRLSISGWFHFPQIGEPG 224 (476)
T ss_pred hhccCcccceEEEEEecccchhhHHHHhccCcceeEeeeecCCccCCCC
Confidence 33456777777877666 788888877544 79999999977554433
No 62
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=40.62 E-value=41 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.6
Q ss_pred CCCCcccccCC------ceeEEEeccccccCcceEEcc
Q 016136 261 DVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRG 292 (394)
Q Consensus 261 d~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~~ 292 (394)
...+.+|+|.+ .+.+.-||..+-+||++.|..
T Consensus 93 ~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 93 NTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred cCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 45899999975 689999998778899999986
No 63
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=39.62 E-value=62 Score=32.94 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred ccccc-ccccchHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCC------CCcccccCCc------ee
Q 016136 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDV------DLGFHVDDSE------VT 274 (394)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~------~L~~H~D~Se------vT 274 (394)
.||++ +.++..+.--..-+.+.+.|+....|. ..|.|+..++.+. .+.+|+|.+- ++
T Consensus 134 ~~G~v~~rg~~~~~~~~~~~~~~~G~~~~~~~g----------~~~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~pP~~~ 203 (366)
T TIGR02409 134 DVGIAVLKGAPTKPGAVEKLGKRIGFIRETNYG----------LLFEVRLKADANNLAYTNGGLPFHTDNPYRDHPPGLQ 203 (366)
T ss_pred hccEEEEeCCCCCHHHHHHHHHHhccccccCCC----------CeEEEEecCCccccccccccccccccCCccCCCCcee
Q ss_pred EEEeccccccCcceEE
Q 016136 275 LNVCLGKQFTGGELFF 290 (394)
Q Consensus 275 LNI~Ln~dFeGGgl~F 290 (394)
+.-|+...=+||++.|
T Consensus 204 ~L~c~~~~~~GG~T~~ 219 (366)
T TIGR02409 204 LLHCLESTVEGGDSLF 219 (366)
T ss_pred eeeecccCCCCcceee
No 64
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=37.87 E-value=14 Score=31.21 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=25.8
Q ss_pred hhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCChhhhh
Q 016136 69 PSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERT 109 (394)
Q Consensus 69 ~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~ 109 (394)
|.+|.-|| +.||-.|-.|.|++|++|+.+.--.
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~G~~ 50 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEIGEN 50 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhcCCC
Confidence 56777776 5788889999999999998765433
No 65
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=35.42 E-value=51 Score=32.28 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHhhhhhhhhcccc------cCCCCcccceeEEEEeCCCCCCCcccccCCceeEEEec------ccccc
Q 016136 217 GLETMLDKLMETYIRPLSKVFFAEV------GGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCL------GKQFT 284 (394)
Q Consensus 217 Gl~~~~~~Ll~~yl~PL~~~LfPe~------~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~L------n~dFe 284 (394)
.+-..|+.|...||-|+.+.+..+. ++.......+.||-...+ ..-.+=.+-+.+|-++.. +-+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d--~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTAD--CYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccC--CCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 4558999999999999998876421 111122334544433333 244444555667777665 35899
Q ss_pred CcceE
Q 016136 285 GGELF 289 (394)
Q Consensus 285 GGgl~ 289 (394)
|||.-
T Consensus 103 GGG~e 107 (226)
T PF11265_consen 103 GGGFE 107 (226)
T ss_pred CCCcc
Confidence 98853
No 66
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=35.38 E-value=79 Score=32.27 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccc-ccccchHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCC------CCCCcccccCCc------ee
Q 016136 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDR------DVDLGFHVDDSE------VT 274 (394)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~------d~~L~~H~D~Se------vT 274 (394)
+||++ +.++..+..-..-+.+.+.|+-...|. ..|.|..+++. ...|.+|+|.+- ++
T Consensus 126 ~~G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g----------~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~~ 195 (362)
T TIGR02410 126 KYGFTFVDNVPVTPEATEKLCERISIIRPTHYG----------GFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGLQ 195 (362)
T ss_pred hhCEEEEcCCCCCHHHHHHHHHHhccceecCCC----------CeEEEEecCCCcccccccCCccccccCCCCCCCCcce
Q ss_pred EEEeccccccCcceEEcc
Q 016136 275 LNVCLGKQFTGGELFFRG 292 (394)
Q Consensus 275 LNI~Ln~dFeGGgl~F~~ 292 (394)
+.-||-..=+||++.|..
T Consensus 196 ~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 196 LFHCLTHDGTGGETVLVD 213 (362)
T ss_pred eEeeeecCCCCCceeeee
No 67
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=35.26 E-value=13 Score=39.91 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=48.2
Q ss_pred eEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC--CCcCCccCCccceeEEEeecchh
Q 016136 274 TLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--HRHGARATTSGHRVNLLLWCRSS 347 (394)
Q Consensus 274 TLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGr--h~HeglpVTsG~RynLV~W~rss 347 (394)
....++++||+||++.|....-.+ ++ ...+++.|.-+-+..+ .-|+..+||+|.|-.+-+|.-.+
T Consensus 369 ~a~~~~~dd~~~~el~~t~~d~~t-~~--------a~~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~~~~ 435 (471)
T KOG4459|consen 369 FALLYLNDDFEGGELLFTEPDAKT-YT--------AISKPECGRECAFSSGAENPHGVKAVTKGLECAVALWPTLA 435 (471)
T ss_pred hccHhhcCccccccceecCCcccc-hh--------hccccccccchhhhccccCccchhhhhhhhHHhhhcCcccC
Confidence 334456899999999998654321 11 1236777777766665 88999999999999999998765
No 68
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=29.65 E-value=17 Score=30.63 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=7.9
Q ss_pred cccccccchh
Q 016136 360 SSWCGECFRE 369 (394)
Q Consensus 360 ~~~c~~c~~~ 369 (394)
+.||+.|.++
T Consensus 32 a~~C~~C~~~ 41 (126)
T cd03012 32 TYCCINCLHT 41 (126)
T ss_pred CCCCccHHHH
Confidence 3899999765
No 69
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.61 E-value=4.9e+02 Score=24.67 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCceeEEEeccccccCcc-eEEcccc
Q 016136 216 FGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGE-LFFRGTR 294 (394)
Q Consensus 216 iGl~~~~~~Ll~~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGg-l~F~~~~ 294 (394)
+.|.+++..=.. .|-|.++...+-....|.|..-.+......+|.+.++=.+-+- +|.- +.+.+ .
T Consensus 7 ~n~~~Wieen~~--------~l~pPv~n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE~Fyql-----eG~~~l~v~d-~ 72 (177)
T PRK13264 7 FNLHKWIEEHRH--------LLKPPVGNKQIWQDSDFIVMVVGGPNARTDFHYDPGEEFFYQL-----EGDMYLKVQE-D 72 (177)
T ss_pred ccHHHHHHhhHH--------HhCCCCCCeeeEcCCCEEEEEEccCCcccccccCCCceEEEEE-----CCeEEEEEEc-C
Confidence 556665544333 2334454433322124555554455558999998876443332 2321 11211 0
Q ss_pred ccccccCCCCccceeeecCCCceEEEecCCCCcCCccCCccceeEEEeecchhHHHHHHhhhccccccccccchhHH
Q 016136 295 CEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKK 371 (394)
Q Consensus 295 c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~ 371 (394)
.+..++...+|..++.|+...|.-.. ..|+.-.+|==-|.. .-...|.-.|..|....-
T Consensus 73 -----------g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~r~~------~~~d~~~wyc~~c~~~~~ 131 (177)
T PRK13264 73 -----------GKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERKRPE------GELDGFQWYCDECNHKVH 131 (177)
T ss_pred -----------CceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeCCCC------CCccceEEECCCCCCeEE
Confidence 01123467899999999999998866 355444333222221 112345566888865444
No 70
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=29.19 E-value=77 Score=31.76 Aligned_cols=99 Identities=21% Similarity=0.326 Sum_probs=57.3
Q ss_pred hhccccCCcEEEee-cCCHHHHHHHHHHHHhhhhhhhcccccccccCCCCccccc---------ccc-cchHHHHHHHHH
Q 016136 159 SIISEPSPGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFRIMRPNTMNKYGAV---------LDD-FGLETMLDKLME 227 (394)
Q Consensus 159 ~i~~ep~P~Vy~fp-vfspefC~~LIeE~E~f~~Ws~gs~~~i~rPn~mN~ygvv---------Ldd-iGl~~~~~~Ll~ 227 (394)
.-..-|.|||..+. ++|.++=.+||..++.-. |.. +.. +| -..+||-- ++. .||-.+-+.++.
T Consensus 65 ~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~p-W~~-SQS--GR--RKQdyGPKvNFkk~Klkt~~F~G~P~~~~~v~r 138 (306)
T KOG3959|consen 65 TDGSIPIPGLTLIENFLSESEEAKLLNMIDTVP-WAQ-SQS--GR--RKQDYGPKVNFKKKKLKTDTFVGMPEYADMVLR 138 (306)
T ss_pred cCCccccCCeeehhhhhccchHhHHHHHhccCc-hhh-hcc--cc--cccccCCccchhhhhhccCcccCCchHHHHHHH
Confidence 34566889999995 999999999999999753 421 111 11 11234432 222 355432222222
Q ss_pred HHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCC
Q 016136 228 TYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS 271 (394)
Q Consensus 228 ~yl~PL~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S 271 (394)
+ + -.||...|. ....---..|.|.+...+.+|.||.
T Consensus 139 r----m--~~yp~l~gf--qp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 139 R----M--SEYPVLKGF--QPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred H----h--hccchhhcc--CcHHHcCcccccccCCccCccccch
Confidence 1 1 134444332 2222224779999999999999975
No 71
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=28.60 E-value=33 Score=27.83 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=9.0
Q ss_pred ccccccchhHHH
Q 016136 361 SWCGECFREKKE 372 (394)
Q Consensus 361 ~~c~~c~~~~~~ 372 (394)
.||+.|..+-..
T Consensus 31 ~wC~~C~~~~p~ 42 (114)
T cd02967 31 PTCPVCKKLLPV 42 (114)
T ss_pred CCCcchHhHhHH
Confidence 799999766433
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=28.45 E-value=26 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.5
Q ss_pred cccccccchhHHH
Q 016136 360 SSWCGECFREKKE 372 (394)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (394)
+.||+.|..-+..
T Consensus 8 ~~~C~~C~~~~~~ 20 (82)
T TIGR00411 8 SPTCPYCPAAKRV 20 (82)
T ss_pred CCCCcchHHHHHH
Confidence 5899999655544
No 73
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=28.09 E-value=1.5e+02 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=20.9
Q ss_pred ecCCCceEEEecCCCCcCCccCCc-cceeEEEee
Q 016136 311 YSHVPGRAVLHRGRHRHGARATTS-GHRVNLLLW 343 (394)
Q Consensus 311 ~~~~~G~AlLHpGrh~HeglpVTs-G~RynLV~W 343 (394)
+...+|..++.+....|...+... +.++..|.+
T Consensus 43 ~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 43 YPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred EEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 457899999999999999887776 455555555
No 74
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=28.01 E-value=39 Score=31.29 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=26.4
Q ss_pred CCCcccccCC------ceeEEEeccccccCcceEEccc
Q 016136 262 VDLGFHVDDS------EVTLNVCLGKQFTGGELFFRGT 293 (394)
Q Consensus 262 ~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~~~ 293 (394)
..+.+|+|.| .+.+..|+...-+||++.|...
T Consensus 95 ~~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 95 GELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADA 132 (258)
T ss_dssp SGEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEH
T ss_pred cccccccccCcccCCcceeEEEeeccCCCCCccccccH
Confidence 4599999998 6899999987779999999864
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=27.68 E-value=21 Score=27.95 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=8.9
Q ss_pred ccccccccchh
Q 016136 359 FSSWCGECFRE 369 (394)
Q Consensus 359 f~~~c~~c~~~ 369 (394)
|+.|||-|..-
T Consensus 6 ~a~~C~~C~~~ 16 (76)
T TIGR00412 6 YGTGCANCQMT 16 (76)
T ss_pred ECCCCcCHHHH
Confidence 57999999654
No 76
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.81 E-value=21 Score=30.44 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=8.6
Q ss_pred c-cccccchhHH
Q 016136 361 S-WCGECFREKK 371 (394)
Q Consensus 361 ~-~c~~c~~~~~ 371 (394)
+ |||.|..+-.
T Consensus 38 ~~~Cp~C~~~~p 49 (146)
T PF08534_consen 38 SAWCPPCRKELP 49 (146)
T ss_dssp TTTSHHHHHHHH
T ss_pred cCCCCcchhhhh
Confidence 5 9999976654
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=25.18 E-value=25 Score=31.87 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred ccccccchhHHH
Q 016136 361 SWCGECFREKKE 372 (394)
Q Consensus 361 ~~c~~c~~~~~~ 372 (394)
+|||-|..+.-.
T Consensus 60 sWCppCr~e~P~ 71 (153)
T TIGR02738 60 STCPYCHQFAPV 71 (153)
T ss_pred CCChhHHHHHHH
Confidence 799999766443
No 78
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=24.04 E-value=31 Score=27.19 Aligned_cols=13 Identities=0% Similarity=-0.335 Sum_probs=9.7
Q ss_pred cccccccchhHHH
Q 016136 360 SSWCGECFREKKE 372 (394)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (394)
+.||+.|.+.+..
T Consensus 21 a~wC~~C~~~~~~ 33 (96)
T cd02956 21 APRSPPSKELLPL 33 (96)
T ss_pred CCCChHHHHHHHH
Confidence 4899999766544
No 79
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.39 E-value=25 Score=27.74 Aligned_cols=10 Identities=40% Similarity=1.378 Sum_probs=7.1
Q ss_pred ccccccccch
Q 016136 359 FSSWCGECFR 368 (394)
Q Consensus 359 f~~~c~~c~~ 368 (394)
+++||+.|..
T Consensus 9 wa~~c~~c~~ 18 (95)
T PF13905_consen 9 WASWCPPCKK 18 (95)
T ss_dssp E-TTSHHHHH
T ss_pred ECCCCHHHHH
Confidence 4589999954
No 80
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=22.92 E-value=74 Score=27.78 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=13.3
Q ss_pred cccccccccchhHHHHHH
Q 016136 358 DFSSWCGECFREKKERQR 375 (394)
Q Consensus 358 ~f~~~c~~c~~~~~~~~~ 375 (394)
-=|+.||.|++.+.|=..
T Consensus 29 H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 29 HNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred cCcccChHHHHHHHHHHH
Confidence 347899999888776433
No 81
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=22.56 E-value=30 Score=31.30 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=9.1
Q ss_pred cccccccchhHH
Q 016136 360 SSWCGECFREKK 371 (394)
Q Consensus 360 ~~~c~~c~~~~~ 371 (394)
++|||.|..+.-
T Consensus 34 AsWCppCr~e~P 45 (146)
T cd03008 34 AVVSPQCQLFAP 45 (146)
T ss_pred CCCChhHHHHHH
Confidence 389999976653
No 82
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=22.50 E-value=2.7e+02 Score=25.35 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred eeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCc
Q 016136 251 GFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGAR 330 (394)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh~Hegl 330 (394)
.+++.|.|+....-..|+..-++-+-+. |.+.+.= +. -.+...+|.++.+++...|.-.
T Consensus 109 ~~~~~~~pg~~~~~~~~h~~~E~~~Vl~-------G~~~~~~-~~-------------~~~~l~~Gd~~~~~~~~~H~~~ 167 (185)
T PRK09943 109 MIFETYQPGTTTGERIKHQGEEIGTVLE-------GEIVLTI-NG-------------QDYHLVAGQSYAINTGIPHSFS 167 (185)
T ss_pred EEEEEccCCCCcccccccCCcEEEEEEE-------eEEEEEE-CC-------------EEEEecCCCEEEEcCCCCeeee
Confidence 3567888877544445666656555442 3333321 11 1246789999999999999877
Q ss_pred cCC
Q 016136 331 ATT 333 (394)
Q Consensus 331 pVT 333 (394)
...
T Consensus 168 n~~ 170 (185)
T PRK09943 168 NTS 170 (185)
T ss_pred CCC
Confidence 754
No 83
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.43 E-value=1.3e+02 Score=29.67 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=33.9
Q ss_pred CCcEE--EeecCCHHHHHHHHHHHHhhhh--hhhcccc---cccccCCCCccccc-cccc-chHHHHHHHHH
Q 016136 165 SPGVF--TFEMLQPRFCELLLAEVENFEK--WVNEAKF---RIMRPNTMNKYGAV-LDDF-GLETMLDKLME 227 (394)
Q Consensus 165 ~P~Vy--~fpvfspefC~~LIeE~E~f~~--Ws~gs~~---~i~rPn~mN~ygvv-Lddi-Gl~~~~~~Ll~ 227 (394)
.-||| |.|+++.+..+.|++.+..-+. |-. ..+ +...+..|++-|.+ +|-. +|+..+..++.
T Consensus 156 ~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~-~El~v~~~~~~~gm~GSGm~iiNPPw~l~~~l~~~l~ 226 (245)
T PF04378_consen 156 PTGVYAIWYPIKDRERVDRFLRALKALGIKKVLR-AELRVRPPDSPRGMNGSGMLIINPPWTLDEELEEILP 226 (245)
T ss_dssp TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-EE-EEEE---SS---S--EEEEEEES--TTHHHHHHHHHH
T ss_pred CCcEEEEEeecccHHHHHHHHHHHHhcCCCCeEE-EEEEecCCCCcCceecceEEEEcCCccHHHHHHHHHH
Confidence 34555 5699999999999998886432 100 111 22335668888876 4443 77766665554
No 84
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=21.64 E-value=53 Score=27.62 Aligned_cols=10 Identities=20% Similarity=0.105 Sum_probs=7.6
Q ss_pred ccccccchhH
Q 016136 361 SWCGECFREK 370 (394)
Q Consensus 361 ~~c~~c~~~~ 370 (394)
.|||.|..+-
T Consensus 34 ~~Cp~C~~~~ 43 (149)
T cd02970 34 FGCPFCREYL 43 (149)
T ss_pred CCChhHHHHH
Confidence 6999996554
No 85
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=21.51 E-value=32 Score=27.93 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=9.6
Q ss_pred cccccccchhHHH
Q 016136 360 SSWCGECFREKKE 372 (394)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (394)
++||+-|......
T Consensus 24 a~wC~~C~~~~p~ 36 (104)
T cd03000 24 APWCGHCKKLEPV 36 (104)
T ss_pred CCCCHHHHhhChH
Confidence 3899999765543
No 86
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.43 E-value=30 Score=25.99 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=8.9
Q ss_pred ccccccccchh
Q 016136 359 FSSWCGECFRE 369 (394)
Q Consensus 359 f~~~c~~c~~~ 369 (394)
|+.|||-|...
T Consensus 40 ~~~~C~~C~~~ 50 (127)
T COG0526 40 WAPWCPPCRAE 50 (127)
T ss_pred EcCcCHHHHhh
Confidence 57999999655
No 87
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=21.40 E-value=35 Score=28.17 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=10.2
Q ss_pred cccccccchhHHH
Q 016136 360 SSWCGECFREKKE 372 (394)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (394)
+.||+-|.+-++.
T Consensus 30 a~wC~~C~~~~~~ 42 (109)
T cd02993 30 APWCPFCQAMEAS 42 (109)
T ss_pred CCCCHHHHHHhHH
Confidence 4899999877654
No 88
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=21.18 E-value=45 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=28.8
Q ss_pred HHhhHHHHHHHHhccCCCCccccccCCcccCCchhHHHhccccHHhhh
Q 016136 111 VQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFR 158 (394)
Q Consensus 111 ~~~~~~~r~~i~~~Y~plh~ely~lnpe~~l~p~f~~ai~~~~~~~~~ 158 (394)
.....+-|..+..-|.-.|||++.=.|+ .+.+|++..+.|-
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~-------~k~~Ne~SLk~Ln 45 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPE-------EKQVNEESLKLLN 45 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChH-------HHHhhHHHHHHHH
Confidence 3445667778888999999999976444 6777776444433
No 89
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.05 E-value=3.3e+02 Score=28.18 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=44.7
Q ss_pred eeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCc
Q 016136 251 GFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGAR 330 (394)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~~~~c~~hv~~~~~~~e~~~~~~~~G~AlLHpGrh~Hegl 330 (394)
...+++.++.-..+-+| .+.|+.+-+. |.+++.=... ..+.+.....+|..+++|....|.-.
T Consensus 69 ~~~~~l~pG~~~~~HwH-~~~E~~yVl~-------G~~~v~~~d~---------~g~~~~~~L~~GD~~~fP~g~~H~~~ 131 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWH-KEAEWAYVLY-------GSCRITAVDE---------NGRNYIDDVGAGDLWYFPPGIPHSLQ 131 (367)
T ss_pred ceEEEEcCCCCCCcccC-CCceEEEEEe-------eEEEEEEEcC---------CCcEEEeEECCCCEEEECCCCeEEEE
Confidence 34577888876666677 4567544442 3333221110 01223335789999999999999988
Q ss_pred cCCccceeEE
Q 016136 331 ATTSGHRVNL 340 (394)
Q Consensus 331 pVTsG~RynL 340 (394)
.+..+.++++
T Consensus 132 n~~~~~~~l~ 141 (367)
T TIGR03404 132 GLDEGCEFLL 141 (367)
T ss_pred ECCCCeEEEE
Confidence 8866666443
No 90
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.96 E-value=36 Score=28.33 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=8.6
Q ss_pred ccccccchhHH
Q 016136 361 SWCGECFREKK 371 (394)
Q Consensus 361 ~~c~~c~~~~~ 371 (394)
.||+.|..+..
T Consensus 35 ~~C~~C~~~~~ 45 (127)
T cd03010 35 SWCAPCREEHP 45 (127)
T ss_pred CcCHHHHHHHH
Confidence 79999976543
No 91
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.63 E-value=60 Score=26.45 Aligned_cols=24 Identities=29% Similarity=0.701 Sum_probs=16.1
Q ss_pred ccceeEEEeecchhHHHHHHhhhccccccccccchhHHH
Q 016136 334 SGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKE 372 (394)
Q Consensus 334 sG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~ 372 (394)
.| ++++|.|..+ .||+.|..+-.+
T Consensus 24 ~g-k~~vl~f~~~--------------~~c~~c~~~l~~ 47 (124)
T PF00578_consen 24 KG-KPVVLFFWPT--------------AWCPFCQAELPE 47 (124)
T ss_dssp TT-SEEEEEEEST--------------TTSHHHHHHHHH
T ss_pred CC-CcEEEEEeCc--------------cCccccccchhH
Confidence 55 7777777543 589999654433
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=20.30 E-value=36 Score=27.90 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=8.5
Q ss_pred cccccccchhH
Q 016136 360 SSWCGECFREK 370 (394)
Q Consensus 360 ~~~c~~c~~~~ 370 (394)
+.||+-|....
T Consensus 24 a~wC~~C~~~~ 34 (103)
T cd02985 24 LKHSGPSVKIY 34 (103)
T ss_pred CCCCHhHHHHh
Confidence 48999997553
Done!