BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016137
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 193/260 (74%), Gaps = 7/260 (2%)
Query: 34 QEKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGG 93
DRI +LPGQP V+F YSGYITVD AGR+LFY L EAP D QPA PLVLWLNGG
Sbjct: 6 HAADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGG 62
Query: 94 PGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIY 153
PGCSSVAYGASEE+G FRV+ G L LN Y WNK AN+LFLDSPAGVGFSYT T DIY
Sbjct: 63 PGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 122
Query: 154 TVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPI 213
T GD RT D+Y FL WF RFP YK+R FY+AGESYAGHY+PEL Q++ R KNP+
Sbjct: 123 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS----KNPV 178
Query: 214 INFKGFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECESAL 273
IN KGF++GN LIDDY D +GT E+WWNHG++SD TY+ LK+ C H++F+ P C++A
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
Query: 274 SRAYSEFADVNPYSIYSSPC 293
A +E +++ YS+Y+ C
Sbjct: 239 DVATAEQGNIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 334 bits (857), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 193/260 (74%), Gaps = 7/260 (2%)
Query: 34 QEKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGG 93
DRI +LPGQP V+F YSGYITVD AGR+LFY L EAP D QPA PLVLWLNGG
Sbjct: 2 HAADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGG 58
Query: 94 PGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIY 153
PGCSSVAYGASEE+G FRV+ G L LN Y WNK AN+LFLDSPAGVGFSYT T DIY
Sbjct: 59 PGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 118
Query: 154 TVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPI 213
T GD RT D+Y FL WF RFP YK+R FY+AGESYAGHY+PEL Q++ R KNP+
Sbjct: 119 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS----KNPV 174
Query: 214 INFKGFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECESAL 273
IN KGF++GN LIDDY D +GT E+WWNHG++SD TY+ LK+ C H++F+ P C++A
Sbjct: 175 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 234
Query: 274 SRAYSEFADVNPYSIYSSPC 293
A +E +++ YS+Y+ C
Sbjct: 235 DVATAEQGNIDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 334 bits (856), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 193/260 (74%), Gaps = 7/260 (2%)
Query: 34 QEKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGG 93
DRI +LPGQP V+F YSGYITVD AGR+LFY L EAP D QPA PLVLWLNGG
Sbjct: 1 HAADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGG 57
Query: 94 PGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIY 153
PGCSSVAYGASEE+G FRV+ G L LN Y WNK AN+LFLDSPAGVGFSYT T DIY
Sbjct: 58 PGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 117
Query: 154 TVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPI 213
T GD RT D+Y FL WF RFP YK+R FY+AGESYAGHY+PEL Q++ R KNP+
Sbjct: 118 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS----KNPV 173
Query: 214 INFKGFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECESAL 273
IN KGF++GN LIDDY D +GT E+WWNHG++SD TY+ LK+ C H++F+ P C++A
Sbjct: 174 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 233
Query: 274 SRAYSEFADVNPYSIYSSPC 293
A +E +++ YS+Y+ C
Sbjct: 234 DVATAEQGNIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 193/260 (74%), Gaps = 7/260 (2%)
Query: 34 QEKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGG 93
DRI +LPGQP V+F YSGYITVD AGR+LFY L EAP D QPA PLVLWLNGG
Sbjct: 6 HAADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGG 62
Query: 94 PGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIY 153
PGCSSVAYGASEE+G FRV+ G L LN Y WNK AN+LFLDSPAGVGFSYT T DIY
Sbjct: 63 PGCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 122
Query: 154 TVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPI 213
T GD RT D+Y FL WF RFP YK+R FY+AGESYAGHY+PEL Q++ R KNP+
Sbjct: 123 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS----KNPV 178
Query: 214 INFKGFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECESAL 273
IN KGF++GN LIDDY D +GT E+WWNHG++SD TY+ LK+ C H++F+ P C++A
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAAT 238
Query: 274 SRAYSEFADVNPYSIYSSPC 293
A +E +++ YS+Y+ C
Sbjct: 239 DVATAEQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 176/263 (66%), Gaps = 6/263 (2%)
Query: 31 FKEQEKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWL 90
++QE DRI+ LPGQP V F Y GY+T+D GRAL+YW EA A+ LVLWL
Sbjct: 2 LQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAP-LVLWL 60
Query: 91 NGGPGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTRE 150
NGGPGCSS+ GA +E+G FRV +G+ L LN YAWNK ANILF +SPAGVGFSY+ T
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 151 DIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVK 210
D+ ++GD + +D YTFLV WF RFP Y +R FY+AGES GH+IP+L QV+ R
Sbjct: 121 DL-SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRN--N 175
Query: 211 NPIINFKGFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECE 270
+P INF+G L+ + L +D+ D IG E WW+HGLISD T K CP +F+ P EC
Sbjct: 176 SPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECT 235
Query: 271 SALSRAYSEFADVNPYSIYSSPC 293
++A +E ++NPY+IY+ C
Sbjct: 236 EVWNKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 149/266 (56%), Gaps = 22/266 (8%)
Query: 35 EKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGGP 94
++D I +LPG +F QYSGY+ + L YW VE+ D P + P+VLWLNGGP
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKD--PENSPVVLWLNGGP 58
Query: 95 GCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYT 154
GCSS+ G E GPF V+ DG L+ NPY+WN AN+L+L+SPAGVGFSY+ + Y
Sbjct: 59 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYA 115
Query: 155 VGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPII 214
D + + L ++F FP+YK+ +L GESYAG YIP L ++ +++P +
Sbjct: 116 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSM 169
Query: 215 NFKGFLLGNPLIDDYFDNIGTHEYW-WNHGLISDSTYQDLKKFCPHE---TFLFPKN-EC 269
N +G +GN L Y N + Y+ + HGL+ + + L+ C + F K+ EC
Sbjct: 170 NLQGLAVGNGL-SSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLEC 228
Query: 270 ESALSRAYSEFAD--VNPYSIYSSPC 293
+ L + +N Y++Y +PC
Sbjct: 229 VTNLQEVARIVGNSGLNIYNLY-APC 253
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 149/266 (56%), Gaps = 22/266 (8%)
Query: 35 EKDRIIKLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGGP 94
++D I +LPG +F QYSGY+ + L YW VE+ D P + P+VLWLNGGP
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKD--PENSPVVLWLNGGP 60
Query: 95 GCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYT 154
GCSS+ G E GPF V+ DG L+ NPY+WN AN+L+L+SPAGVGFSY+ + Y
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYA 117
Query: 155 VGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPII 214
D + + L ++F FP+YK+ +L GESYAG YIP L ++ +++P +
Sbjct: 118 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSM 171
Query: 215 NFKGFLLGNPLIDDYFDNIGTHEYW-WNHGLISDSTYQDLKKFCPHE---TFLFPKN-EC 269
N +G +GN L Y N + Y+ + HGL+ + + L+ C + F K+ EC
Sbjct: 172 NLQGLAVGNGL-SSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLEC 230
Query: 270 ESALSRAYSEFAD--VNPYSIYSSPC 293
+ L + +N Y++Y +PC
Sbjct: 231 VTNLQEVARIVGNSGLNIYNLY-APC 255
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 16/189 (8%)
Query: 41 KLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGGPGCSSVA 100
K+ G PNV +QY+GY+ V+ + + F+W E+ D PA P++LWLNGGPGCSS+
Sbjct: 6 KILGIDPNV--TQYTGYLDVEDE-DKHFFFWTFESRND--PAKDPVILWLNGGPGCSSLT 60
Query: 101 YGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRT 160
G E+GP + D K + NPY+WN A ++FLD P VGFSY+ + TV
Sbjct: 61 -GLFFELGPSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---A 115
Query: 161 GKDAYTFLVNWFVRFPQY--KHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPIINFKG 218
GKD Y FL +F +FP+Y K + F++AGESYAGHYIP I+ K+ N
Sbjct: 116 GKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSH----KDRNFNLTS 171
Query: 219 FLLGNPLID 227
L+GN L D
Sbjct: 172 VLIGNGLTD 180
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 109/189 (57%), Gaps = 16/189 (8%)
Query: 41 KLPGQPPNVNFSQYSGYITVDRKAGRALFYWLVEAPVDRQPASKPLVLWLNGGPGCSSVA 100
K+ G PNV +QY+GY+ V+ + + F+W E+ D PA P++LWLNGGPGCSS+
Sbjct: 6 KILGIDPNV--TQYTGYLDVEDE-DKHFFFWTFESRND--PAKDPVILWLNGGPGCSSLT 60
Query: 101 YGASEEVGPFRVRRDGKRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRT 160
G +GP + D K + NPY+WN A ++FLD P VGFSY+ + TV
Sbjct: 61 -GLFFALGPSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVA---A 115
Query: 161 GKDAYTFLVNWFVRFPQY--KHRPFYLAGESYAGHYIPELCQVIVRGNKGVKNPIINFKG 218
GKD Y FL +F +FP+Y K + F++AG SYAGHYIP I+ K+ N
Sbjct: 116 GKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSH----KDRNFNLTS 171
Query: 219 FLLGNPLID 227
L+GN L D
Sbjct: 172 VLIGNGLTD 180
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 139/314 (44%), Gaps = 19/314 (6%)
Query: 69 FYWLVEAPVDRQPASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDGKRLKLNPYAWNK 128
F+W +PL++WLNGGPGCSS+ GA E GPFRV DGK L LN +W
Sbjct: 52 FFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWIS 109
Query: 129 EANILFLDSPAGVGFSYTKTREDIYTVGDK------RTGKDAYTFLVNWFVRFPQYKHRP 182
+ ++LF+D P G GFS + +++ +K K FL N+F FP+ R
Sbjct: 110 KGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRK 169
Query: 183 FYLAGESYAGHYIPELCQVIVRGNK--GVKNPIINFKGFLLGNPLIDDYFDNIGTHEYWW 240
L+GESYAG YIP I+ NK + + K L+GN ID ++ +
Sbjct: 170 IILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAM 229
Query: 241 NHGLISDS--TYQDLKKFCPHETFLFPKNECESALSRAYSEFADV-NPYSIYSSPCFESG 297
LI +S ++ L + L + A +Y E ++ N Y+ + G
Sbjct: 230 EKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKG 289
Query: 298 TLK----RNLQLPLPWKFRGVD-ECVVKYTKVYMNRLDVQKALHADASLINHPWGSCSGD 352
T N L + G++ + + + + V +LH D+ I+H W C+
Sbjct: 290 TADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFFSTPGVIDSLHLDSDKIDH-WKECTNS 348
Query: 353 TDAILPLTATRYSI 366
L ++ SI
Sbjct: 349 VGTKLSNPISKPSI 362
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 33/103 (32%)
Query: 315 DECVVKYTKVYMNRLDVQKALHADAS-LINHPWGSCS----------------------- 350
D C +Y+ Y NR DVQ ALHA+ + +N+ W +CS
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 351 ---------GDTDAILPLTATRYSIGSLKLETNISWYAWLDDH 384
GDTDA++PLTATRYSIG+L L T SWY W DD
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQ 107
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 33/103 (32%)
Query: 315 DECVVKYTKVYMNRLDVQKALHADAS-LINHPWGSCS----------------------- 350
D C +Y+ Y NR DVQ ALHA+ + +N+ W +CS
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 351 ---------GDTDAILPLTATRYSIGSLKLETNISWYAWLDDH 384
GDTDA++PLTATRYSIG+L L T SWY W DD
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQ 105
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 33/103 (32%)
Query: 315 DECVVKYTKVYMNRLDVQKALHADAS-LINHPWGSCS----------------------- 350
D C +Y+ Y NR DVQ ALHA+ + +N+ W +CS
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 351 ---------GDTDAILPLTATRYSIGSLKLETNISWYAWLDDH 384
GDTDA++PLTATRYSIG+L L T SWY W DD
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQ 105
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 33/103 (32%)
Query: 315 DECVVKYTKVYMNRLDVQKALHADAS-LINHPWGSCS----------------------- 350
D C +Y+ Y NR DVQ ALHA+ + +N+ W +CS
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 351 ---------GDTDAILPLTATRYSIGSLKLETNISWYAWLDDH 384
GDTDA++PLTATRYSIG+L L T SWY W DD
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQ 105
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 33/99 (33%)
Query: 315 DECVVKYTKVYMNRLDVQKALHADAS-LINHPWGSCS----------------------- 350
D C V + Y+N +VQ ALHA+ S ++ +PW CS
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 351 ---------GDTDAILPLTATRYSIGSLKLETNISWYAW 380
GDTD+++P+++TR S+ +L+L SWY W
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPW 103
>pdb|1HQG|A Chain A, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|B Chain B, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
pdb|1HQG|C Chain C, Crystal Structure Of The H141c Arginase Variant Complexed
With Products Ornithine And Urea
Length = 323
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDINTPLTTSSGNLXGQPV 145
>pdb|2RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|2RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDINTPLTTSSGNLHGQPV 145
>pdb|1HQX|A Chain A, R308k Arginase Variant
pdb|1HQX|B Chain B, R308k Arginase Variant
pdb|1HQX|C Chain C, R308k Arginase Variant
Length = 323
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDINTPLTTSSGNLHGQPV 145
>pdb|1RLA|A Chain A, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|B Chain B, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1RLA|C Chain C, Three-Dimensional Structure Of Rat Liver Arginase, The
Binuclear Manganese Metalloenzyme Of The Urea Cycle
pdb|1D3V|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1D3V|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With 2(S)-Amino-6-Boronohexanoic
Acid, An L-Arginine Analog
pdb|1HQ5|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQ5|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With S-(2-Boronoethyl)-L-Cysteine, An
L-Arginine Analogue
pdb|1HQF|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQF|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With N-Hydroxy-L-Arginine
pdb|1HQH|A Chain A, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|B Chain B, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1HQH|C Chain C, Crystal Structure Of The Binuclear Manganese Metalloenzyme
Arginase Complexed With Nor-N-Hydroxy-L-Arginine
pdb|1R1O|A Chain A, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|B Chain B, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
pdb|1R1O|C Chain C, Amino Acid Sulfonamides As Transition-State Analogue
Inhibitors Of Arginase
Length = 323
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDINTPLTTSSGNLHGQPV 145
>pdb|3E8Z|A Chain A, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|B Chain B, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
pdb|3E8Z|C Chain C, X-Ray Structure Of Rat Arginase I-N130a Mutant: The
Unliganded Complex
Length = 323
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDIATPLTTSSGNLHGQPV 145
>pdb|3E8Q|A Chain A, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E8Q|B Chain B, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E8Q|C Chain C, X-Ray Structure Of Rat Arginase I-T135a: The Unliganded
Complex
pdb|3E9B|A Chain A, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
pdb|3E9B|B Chain B, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
pdb|3E9B|C Chain C, X-Ray Structure Of Rat Arginase I-T135a Mutant: The
Complex With Bec
Length = 323
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPE 197
F K + ++ A T H +A S +GH P+
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHS---MAIGSISGHARVHPD 117
Query: 198 LCQVIVRGNKGVKNPIINFKGFLLGNPL 225
LC + V + + P+ G L G P+
Sbjct: 118 LCVIWVDAHTDINTPLTASSGNLHGQPV 145
>pdb|3RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|3RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|4RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
pdb|5RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
Diminishes Thermostability And Catalytic Function
Length = 323
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 4/146 (2%)
Query: 82 ASKPLVLWLNGGPGCSSVAYGASEEVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPA 139
+SKP + + G P G E+ GP +R+ G ++LK Y ++ F+D P
Sbjct: 2 SSKPKPIEIIGAPFSKGQPRGGVEK-GPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPN 60
Query: 140 GVGFSYTKTREDIYTVGDKRTGKDAYTFLVNWFVRFPQYKHRPFYLAGESYAGHYIPELC 199
F K + ++ A T N + + S P+LC
Sbjct: 61 DSPFQIVKNPRSVGKANEQLAAVVAET-QKNGTISVVLGGDNSMAIGSISGHARVHPDLC 119
Query: 200 QVIVRGNKGVKNPIINFKGFLLGNPL 225
+ V + + P+ G L G P+
Sbjct: 120 VIWVDAHTDINTPLTTSSGNLHGQPV 145
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 117 KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTR-------EDIYTVGDKRTGKDAYTF 167
+RLK A +E ++L L + F + R ED+YTVG TG A +F
Sbjct: 366 RRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSF 423
>pdb|1TA1|A Chain A, H141c Mutant Of Rat Liver Arginase I
pdb|1TA1|B Chain B, H141c Mutant Of Rat Liver Arginase I
pdb|1TA1|C Chain C, H141c Mutant Of Rat Liver Arginase I
Length = 314
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLC 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1TBJ|A Chain A, H141a Mutant Of Rat Liver Arginase I
pdb|1TBJ|B Chain B, H141a Mutant Of Rat Liver Arginase I
pdb|1TBJ|C Chain C, H141a Mutant Of Rat Liver Arginase I
Length = 314
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLA 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1P8O|A Chain A, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8O|B Chain B, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8O|C Chain C, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTNINTPLTTSSGNLH 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1P8S|A Chain A, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8S|B Chain B, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8S|C Chain C, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLH 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1P8Q|A Chain A, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Cluster Of Arginase I.
pdb|1P8Q|B Chain B, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Cluster Of Arginase I.
pdb|1P8Q|C Chain C, Structural And Functional Importance Of First-Shell Metal
Ligands In The Binuclear Cluster Of Arginase I
Length = 314
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLH 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1T4S|A Chain A, Arginase-L-Valine Complex
pdb|1T4S|B Chain B, Arginase-L-Valine Complex
pdb|1T4S|C Chain C, Arginase-L-Valine Complex
pdb|1T4P|A Chain A, Arginase-Dehydro-Abh Complex
pdb|1T4P|B Chain B, Arginase-Dehydro-Abh Complex
pdb|1T4P|C Chain C, Arginase-Dehydro-Abh Complex
pdb|1T4R|A Chain A, Arginase-descarboxy-nor-noha Complex
pdb|1T4R|B Chain B, Arginase-descarboxy-nor-noha Complex
pdb|1T4R|C Chain C, Arginase-descarboxy-nor-noha Complex
pdb|1T4T|A Chain A, Arginase-Dinor-Noha Complex
pdb|1T4T|B Chain B, Arginase-Dinor-Noha Complex
pdb|1T4T|C Chain C, Arginase-Dinor-Noha Complex
Length = 314
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLH 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1P8N|A Chain A, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8N|B Chain B, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase
I.
pdb|1P8N|C Chain C, Structural And Functional Importance Of First-shell Metal
Ligands In The Binuclear Manganese Cluster Of Arginase I
Length = 314
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLH 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1TBL|A Chain A, H141n Mutant Of Rat Liver Arginase I
pdb|1TBL|B Chain B, H141n Mutant Of Rat Liver Arginase I
pdb|1TBL|C Chain C, H141n Mutant Of Rat Liver Arginase I
Length = 314
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 106 EVGPFRVRRDG--KRLKLNPYAWNKEANILFLDSPAGVGFSYTKTREDIYTVGDKRTGKD 163
E GP +R+ G ++LK Y ++ F+D P F K + ++
Sbjct: 20 EKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVV 79
Query: 164 AYTFLVNWFVRFPQYKHRPFYLAGESYAGH--YIPELCQVIVRGNKGVKNPIINFKGFLL 221
A T H +A S +GH P+LC + V + + P+ G L
Sbjct: 80 AETQKNGTISVVLGGDHS---MAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLN 136
Query: 222 GNPL 225
G P+
Sbjct: 137 GQPV 140
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 218 GFLLGNPLIDDYFDNIGTHEYWWNHGLISDSTYQDLKKFCPHETFLFPKNECESALSRAY 277
GF+ G+ D Y ++ HEY ++ I D ETF + E R Y
Sbjct: 144 GFIAGDGCFDKYHSHVKGHEYIYDRLRIYDYRI---------ETFEIINDYLEKTFGRKY 194
Query: 278 SEFADVNPYSI 288
S D N Y I
Sbjct: 195 SIQKDRNIYYI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,264,866
Number of Sequences: 62578
Number of extensions: 612718
Number of successful extensions: 1231
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 36
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)