BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016139
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/397 (61%), Positives = 296/397 (74%), Gaps = 5/397 (1%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
MPPK P PI+GRF + LKIGIVGLPNVGKST FN LT AENFPFCTI+
Sbjct: 1 MPPKKGGDGIKPP--PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID 58
Query: 61 PNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD 120
PNE+RV +PDERF++LCQ KP S +PAFL + DIAGLV+GAH GQGLGN+FLSHI A D
Sbjct: 59 PNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACD 118
Query: 121 GIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180
GIFH+ RAFED DI HV+ SVDP+RD+E+I EL+LKD E + I+ +EK R DK+
Sbjct: 119 GIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKK 178
Query: 181 LKIEHELCQRVKAWLQDGKD-VRL-GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238
LK E+++ +VK+W+ D K VR DW +IE+LN LT+KP+VYLVN++EKDY R
Sbjct: 179 LKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238
Query: 239 KKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKT 297
KKNK+L KI WV ++ G +IPFS ALE L ++ +E KY E N QSALPKIIK
Sbjct: 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 298
Query: 298 GFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGS 357
GF+A+ L YFFTAGPDEV+ W IR+ TKAPQAAG IHTDFE+GFI AEVMK++D KE GS
Sbjct: 299 GFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGS 358
Query: 358 EPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK 394
E AVKAAGKY+Q+G+ Y+V+DGDIIFFKFN KK
Sbjct: 359 ENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKK 395
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/375 (51%), Positives = 263/375 (70%), Gaps = 9/375 (2%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK--LAIPAENFPFCTIEPNEARVNIPDERFEWL 76
GR ++LK GIVG PNVGKST F +TK L PA N+P+ TI+P EA+V +PDERF+WL
Sbjct: 15 GRPGNNLKTGIVGXPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWL 73
Query: 77 CQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIH 136
C+ +KPKS VPAFL + DIAGL +GA G GLGN+FLSH+RAVD I+ V+RAF+D +IIH
Sbjct: 74 CEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIH 133
Query: 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVK 192
V+ VDP+RDL +I EL +KD EF+E+ +E + K R + K K E + ++V
Sbjct: 134 VEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKEEQAIIEKVY 193
Query: 193 AWLQDGKD-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWV 251
+L + K +R GDW ++EI+N+ LLTAKPV+YLVN +E+D+ R+KNK+LPKI W+
Sbjct: 194 QYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNXSERDFLRQKNKYLPKIKKWI 253
Query: 252 QEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 310
E+ G+ +IP S A E L + +EA + C++ +S LPKII TG++A+NLI +FT
Sbjct: 254 DENSPGDTLIPXSVAFEERLTNFTEEEAIEECKKLNTKSXLPKIIVTGYNALNLINYFTC 313
Query: 311 GPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQE 370
G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E+ + DL + +E A +AAGKY +
Sbjct: 314 GEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIXHYQDLFDYKTENACRAAGKYLTK 373
Query: 371 GKTYVVQDGDIIFFK 385
GK YV + GDI +K
Sbjct: 374 GKEYVXESGDIAHWK 388
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 231/365 (63%), Gaps = 5/365 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
+P +E DIAGLV GA +G+GLGN FL++IR D I HV+R FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204
D++ I+ EL L D++ ER I+ ++K K DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQKRAK-GGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 205 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264
+++ + ++ LT KP +Y+ N+NE ++ N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKEGA-VVVPVCA 238
Query: 265 ALERNLADMPPDEAAKYCEENKVQS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ 323
A+E +A++ +E ++ ++ ++ L ++I+ G++ +NL +FTAG EV+ W +
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVG 298
Query: 324 TKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 383
AP+AA IHTDFE+GFI AEV+ ++D + E K AGK++ EGK Y+VQDGD++
Sbjct: 299 ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358
Query: 384 FKFNV 388
F+FNV
Sbjct: 359 FRFNV 363
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 288 bits (736), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 11/370 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 AVPAFLEIH----DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 140
VP + H DIAGLV+GAH+G+GLGN FL+HIR V I HVLR F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200
VDP+ D EV+ EL L D+ +ERR+E + K R++ ++L + E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKE-ARADRERLPL-LEAAEGLYVHLQEGKP 179
Query: 201 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE--HGGEQ 258
R A L LLTAKPV+Y+ N+ E+D + P++ A ++ G +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN--PQVEAVRRKALEEGAE 237
Query: 259 IIPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKC 317
++ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+
Sbjct: 238 VVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRA 297
Query: 318 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQ 377
W +RR TKAP+AAG IH+D ERGFI AEV+ +D L E G K G + EGK Y VQ
Sbjct: 298 WTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQ 357
Query: 378 DGDIIFFKFN 387
DGD+I+ FN
Sbjct: 358 DGDVIYVLFN 367
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 11/370 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 AVPAFLEIH----DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 140
VP + H DIAGLV+GAH+G+GLGN FL+HIR V I HVLR F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200
VDP+ D EV+ EL L D+ +ERR+E + K R++ ++L + E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKEA-RADRERLPL-LEAAEGLYVHLQEGKP 179
Query: 201 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE--HGGEQ 258
R A L LLTAKPV+Y+ N+ E+D + P++ A ++ G +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN--PQVEAVRRKALEEGAE 237
Query: 259 IIPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKC 317
++ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+
Sbjct: 238 VVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRA 297
Query: 318 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQ 377
W +RR TKAP+AAG IH+D ERGFI AEV+ +D L E G K G + EGK Y VQ
Sbjct: 298 WTVRRGTKAPRAAGEIHSDXERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQ 357
Query: 378 DGDIIFFKFN 387
DGD+I+ FN
Sbjct: 358 DGDVIYVLFN 367
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 35/201 (17%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERFEWL-C----QL 79
+IG+VG PNVGKST F+ T + + N+PF TIE N I D + L C Q
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 80 FKPKSAVPAF-LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF--EDPDIIH 136
++ ++ + ++ D+AGLV GAHEG+GLGN FL +R + HV+ A DP+
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPE-GQ 120
Query: 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIE---------DVEKSMKRSNDKQLKIEHEL 187
D DPV +DIEF+ER I+ +K KR +++K+E +
Sbjct: 121 PTDYHDPV------------EDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAI 168
Query: 188 CQRVKAWLQDGKDVRLGDWKA 208
+ + + DV W+A
Sbjct: 169 AEHLSGIGVNENDV----WEA 185
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62
P+ S++ E ER I+ +G+VG P+VGKSTL + ++ ++ F T+ PN
Sbjct: 137 PQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN 196
Query: 63 EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI 122
V D R S V A D+ GL+ GAH+G GLG+ FL HI I
Sbjct: 197 LGXVETDDGR-----------SFVXA-----DLPGLIEGAHQGVGLGHQFLRHIERTRVI 240
Query: 123 FHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164
HV+ D + + DP D I+ EL ++ ER
Sbjct: 241 VHVI----DXSGL---EGRDPYDDYLTINQELSEYNLRLTER 275
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSA 85
+G+VG PN GKS+L +T+ +PF T+ PN V + +ERF
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF------------ 207
Query: 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP 132
+ DI G++ GA EG+GLG FL HI + +VL A ++P
Sbjct: 208 -----TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP 249
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G VG P+VGKSTL + LT A + F T+ V +P + + K A
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTL------VTVPG--------VIRYKGAK 120
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVL 126
+++ D+ G++ GA +G+G G ++ R + +F +L
Sbjct: 121 ---IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIIL 157
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 23 SHLK---IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
SH+K I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 54
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
+ +VG PNVGK+T+FN LT L N+P T+E E + ++ F
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEF 52
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63
L +G++G PN GK+TLFN LT N+ T+E E
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKE 42
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNT-LTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76
+ +K+ IVG PNVGKSTLFN L K P T +P + V I ++ ++
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 233
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 29 IVGLPNVGKSTLFNTLTK 46
IVG PNVGKSTLFN L K
Sbjct: 6 IVGRPNVGKSTLFNKLVK 23
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 26 KIGIVGLPNVGKSTLFN-TLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
K+ IVG PNVGKS+LFN L K + + P T + E V RF
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRF 51
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
++G PN GK+TLFN LT N+P T+E
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVE 37
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVN 67
+L + +++GI G+P VGKST + L L A ++P+ R
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG 99
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
+ I G PNVGKSTL LT ++PF T
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTT 201
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
Length = 337
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVN 67
+L + +++GI G+P VGKST + L L A ++P+ R
Sbjct: 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG 99
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFN 42
+ LK+ IVG PNVGKS+L N
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLN 242
>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
Length = 350
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 49 IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGL 108
+P E P +E + N+ + + + +L PK +PA L++ I G+V + G +
Sbjct: 240 LPQEGTP---LEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDGMVLRLNAGANI 296
Query: 109 GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVI 150
S L ++G+ + R E+ D D VR LE++
Sbjct: 297 VTSILPPDSQLEGVANYDRDLEERD----RDIKSVVRRLEIM 334
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 29 IVGLPNVGKSTLFNTLTK 46
I+G+PNVGKSTL N L K
Sbjct: 125 IIGIPNVGKSTLINRLAK 142
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSI 36
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSI 37
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI 49
+ IVG PNVGKSTL N L + +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKV 32
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
I IVG PNVGKSTL N L
Sbjct: 8 IAIVGRPNVGKSTLLNKL 25
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
I IVG PNVGKSTL N L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P ++E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVE 39
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71
L++ IVG PNVGKSTL N L E+ T P R I +E
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLN-----EDRAIVTDIPGTTRDVISEE 285
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
+ IVG PNVGKST+FN +
Sbjct: 6 VAIVGRPNVGKSTIFNRI 23
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80
+ IVG PNVGKST+FN I E P R I EWL F
Sbjct: 26 VAIVGRPNVGKSTIFNR-----IAGERISIVEDTPGVTRDRIYSSA-EWLNYDF 73
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P +E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVE 39
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G P GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+KIGIVGL VG ST F L K
Sbjct: 1 MKIGIVGLGRVGSSTAFALLMK 22
>pdb|2A45|H Chain H, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|K Chain K, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 91
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 308 FTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFIC 343
+ A P + Q + + KAP A G +H D + G +C
Sbjct: 27 YRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC 62
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 268 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 317
R+ +D P EA + CE+ V +A + T +L++ + A PD +
Sbjct: 163 RDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISV 212
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 268 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 317
R+ +D P EA + CE+ V +A + T +L++ + A PD +
Sbjct: 143 RDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISV 192
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTL 44
F ++ IVG+PN GKST+ N L
Sbjct: 96 FDRLARVLIVGVPNTGKSTIINKL 119
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
I + G PNVGKS+ N +++ + +++ F T
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT 63
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 528
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADI 211
F ERRIE ++K MK KQ KI+ +L++ K +R DW A +
Sbjct: 36 FNERRIELLQKRMK----KQQKID---AGEFPKFLEETKRIREADWTIAKL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,447,971
Number of Sequences: 62578
Number of extensions: 537100
Number of successful extensions: 1655
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 70
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)