Query 016139
Match_columns 394
No_of_seqs 465 out of 3222
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00258 GTP-binding protein; 100.0 1.1E-88 2.4E-93 670.3 32.1 379 12-390 9-390 (390)
2 PRK09601 GTP-binding protein Y 100.0 2.6E-88 5.6E-93 660.7 30.2 362 24-388 2-364 (364)
3 TIGR00092 GTP-binding protein 100.0 5.4E-87 1.2E-91 651.4 31.4 362 24-388 2-368 (368)
4 KOG1491 Predicted GTP-binding 100.0 4E-85 8.7E-90 613.9 28.7 384 1-388 1-391 (391)
5 COG0012 Predicted GTPase, prob 100.0 3.5E-85 7.6E-90 628.7 26.2 364 23-388 1-372 (372)
6 PRK09602 translation-associate 100.0 5.6E-57 1.2E-61 449.5 25.9 336 25-386 2-394 (396)
7 cd01900 YchF YchF subfamily. 100.0 2.9E-48 6.4E-53 368.2 20.8 273 27-302 1-274 (274)
8 PF06071 YchF-GTPase_C: Protei 100.0 7.7E-44 1.7E-48 272.1 6.1 84 304-387 1-84 (84)
9 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 3.6E-43 7.9E-48 266.5 6.6 83 304-386 1-83 (83)
10 COG1163 DRG Predicted GTPase [ 100.0 8.7E-43 1.9E-47 327.1 8.9 287 25-385 64-363 (365)
11 cd01899 Ygr210 Ygr210 subfamil 100.0 3E-30 6.5E-35 250.6 16.9 248 27-282 1-268 (318)
12 KOG1486 GTP-binding protein DR 100.0 2.4E-30 5.2E-35 234.9 8.4 285 24-385 62-362 (364)
13 KOG1487 GTP-binding protein DR 99.9 2.1E-26 4.5E-31 210.1 4.6 283 26-385 61-356 (358)
14 cd04938 TGS_Obg-like TGS_Obg-l 99.9 6.6E-22 1.4E-26 151.7 6.4 65 304-386 1-76 (76)
15 COG4152 ABC-type uncharacteriz 99.8 8.4E-21 1.8E-25 173.0 7.1 165 15-207 19-215 (300)
16 KOG1489 Predicted GTP-binding 99.8 1E-19 2.2E-24 171.1 9.5 101 14-130 186-286 (366)
17 COG1120 FepC ABC-type cobalami 99.8 4.2E-19 9.2E-24 166.1 10.4 174 15-207 19-224 (258)
18 cd01896 DRG The developmentall 99.8 5.2E-19 1.1E-23 165.4 7.5 223 26-310 2-233 (233)
19 PRK12296 obgE GTPase CgtA; Rev 99.8 2E-18 4.3E-23 175.9 11.3 99 14-129 149-247 (500)
20 COG4586 ABC-type uncharacteriz 99.8 6.7E-19 1.4E-23 163.0 5.5 180 15-231 41-260 (325)
21 COG0536 Obg Predicted GTPase [ 99.7 1.8E-18 3.8E-23 164.7 7.8 127 6-155 141-267 (369)
22 COG1131 CcmA ABC-type multidru 99.7 6.7E-19 1.5E-23 170.0 2.5 173 14-206 21-221 (293)
23 COG1159 Era GTPase [General fu 99.7 2E-18 4.4E-23 162.3 5.0 194 25-237 7-220 (298)
24 PRK12297 obgE GTPase CgtA; Rev 99.7 2.7E-17 6E-22 165.4 12.5 93 21-129 155-247 (424)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 4.1E-18 8.9E-23 158.8 5.6 173 13-206 19-222 (254)
26 COG1137 YhbG ABC-type (unclass 99.7 2.9E-19 6.3E-24 158.6 -2.1 173 15-207 21-224 (243)
27 COG4555 NatA ABC-type Na+ tran 99.7 2.7E-18 5.9E-23 152.6 3.7 173 15-207 19-218 (245)
28 COG1127 Ttg2A ABC-type transpo 99.7 2.5E-17 5.5E-22 150.3 6.8 172 15-207 25-231 (263)
29 cd01666 TGS_DRG_C TGS_DRG_C: 99.7 2.3E-17 5E-22 125.9 5.4 70 304-385 1-74 (75)
30 PRK12298 obgE GTPase CgtA; Rev 99.7 1.7E-16 3.7E-21 158.6 12.8 97 17-129 152-248 (390)
31 PRK13537 nodulation ABC transp 99.7 1.7E-17 3.7E-22 161.3 4.1 172 15-206 24-222 (306)
32 COG0411 LivG ABC-type branched 99.7 5.4E-18 1.2E-22 155.2 0.3 171 15-207 21-235 (250)
33 PRK13536 nodulation factor exp 99.7 2.9E-17 6.3E-22 161.7 3.9 173 15-207 58-257 (340)
34 COG1125 OpuBA ABC-type proline 99.7 9.3E-17 2E-21 147.6 5.7 172 15-205 18-219 (309)
35 COG1116 TauB ABC-type nitrate/ 99.6 7.4E-17 1.6E-21 148.8 4.5 165 15-198 20-207 (248)
36 COG1135 AbcC ABC-type metal io 99.6 2.2E-16 4.7E-21 149.0 6.8 176 13-207 21-227 (339)
37 TIGR01188 drrA daunorubicin re 99.6 1.2E-16 2.6E-21 155.1 3.9 172 15-206 10-208 (302)
38 cd01669 TGS_Ygr210_C TGS_Ygr21 99.6 3.8E-16 8.3E-21 119.7 5.8 53 316-385 23-75 (76)
39 COG1134 TagH ABC-type polysacc 99.6 2.5E-16 5.5E-21 144.5 5.3 174 15-217 44-238 (249)
40 TIGR02729 Obg_CgtA Obg family 99.6 3.1E-15 6.8E-20 146.6 13.2 97 17-129 150-246 (329)
41 TIGR03522 GldA_ABC_ATP gliding 99.6 8.2E-17 1.8E-21 156.3 1.5 172 15-207 19-217 (301)
42 COG3638 ABC-type phosphate/pho 99.6 1.5E-15 3.1E-20 138.5 9.5 182 15-215 21-241 (258)
43 COG3842 PotA ABC-type spermidi 99.6 3.2E-16 6.9E-21 153.0 5.5 175 14-207 21-222 (352)
44 COG1126 GlnQ ABC-type polar am 99.6 6.4E-16 1.4E-20 139.2 6.6 165 15-204 19-218 (240)
45 COG4559 ABC-type hemin transpo 99.6 3.1E-15 6.7E-20 134.2 9.4 164 17-205 20-224 (259)
46 PF02421 FeoB_N: Ferrous iron 99.6 1.6E-15 3.4E-20 132.5 7.4 59 26-101 2-60 (156)
47 COG1118 CysA ABC-type sulfate/ 99.6 1.6E-15 3.4E-20 143.0 7.3 173 15-207 19-223 (345)
48 COG3839 MalK ABC-type sugar tr 99.6 6.4E-16 1.4E-20 150.0 4.7 174 14-206 19-218 (338)
49 PRK09536 btuD corrinoid ABC tr 99.6 1E-15 2.2E-20 153.6 6.2 172 15-206 20-223 (402)
50 TIGR02314 ABC_MetN D-methionin 99.6 1.9E-16 4.1E-21 155.9 0.9 174 14-206 21-225 (343)
51 TIGR01288 nodI ATP-binding ABC 99.6 6.6E-16 1.4E-20 150.0 4.5 172 15-206 21-219 (303)
52 COG0410 LivF ABC-type branched 99.6 2E-15 4.4E-20 137.4 7.3 175 13-206 18-221 (237)
53 cd03259 ABC_Carb_Solutes_like 99.6 3.7E-16 8.1E-21 143.9 2.3 169 15-202 17-211 (213)
54 cd03261 ABC_Org_Solvent_Resist 99.6 8.9E-16 1.9E-20 143.6 4.8 172 15-205 17-220 (235)
55 PRK11650 ugpC glycerol-3-phosp 99.6 6.5E-16 1.4E-20 153.1 3.0 173 15-206 21-219 (356)
56 cd03293 ABC_NrtD_SsuB_transpor 99.6 4.6E-16 9.9E-21 144.1 1.7 173 15-206 21-218 (220)
57 cd03226 ABC_cobalt_CbiO_domain 99.6 1.7E-15 3.6E-20 138.8 4.4 166 15-200 17-204 (205)
58 PRK12299 obgE GTPase CgtA; Rev 99.6 6.3E-15 1.4E-19 144.7 8.7 99 15-129 149-247 (335)
59 cd03265 ABC_DrrA DrrA is the A 99.6 9.2E-16 2E-20 142.1 2.5 172 15-205 17-215 (220)
60 TIGR03265 PhnT2 putative 2-ami 99.6 6E-16 1.3E-20 153.2 1.3 172 16-206 22-219 (353)
61 cd03224 ABC_TM1139_LivF_branch 99.6 4E-15 8.7E-20 137.8 6.7 171 15-205 17-215 (222)
62 TIGR00960 3a0501s02 Type II (G 99.6 1.5E-15 3.4E-20 140.1 3.9 165 15-199 20-215 (216)
63 PRK11247 ssuB aliphatic sulfon 99.6 1.6E-15 3.5E-20 143.9 3.9 171 15-205 29-217 (257)
64 cd03256 ABC_PhnC_transporter A 99.6 1.3E-15 2.8E-20 142.8 3.1 172 15-205 18-228 (241)
65 cd03268 ABC_BcrA_bacitracin_re 99.6 2.9E-15 6.2E-20 137.5 5.3 168 15-202 17-206 (208)
66 cd03296 ABC_CysA_sulfate_impor 99.6 1.6E-15 3.5E-20 142.2 3.6 172 15-205 19-220 (239)
67 cd03263 ABC_subfamily_A The AB 99.6 1E-15 2.2E-20 141.7 2.2 171 14-205 18-215 (220)
68 COG3840 ThiQ ABC-type thiamine 99.6 5.2E-15 1.1E-19 129.9 6.4 175 14-207 15-215 (231)
69 TIGR03410 urea_trans_UrtE urea 99.6 2.9E-15 6.4E-20 139.6 5.3 173 15-206 17-216 (230)
70 TIGR01184 ntrCD nitrate transp 99.6 1.1E-15 2.5E-20 142.6 2.5 170 17-205 4-198 (230)
71 TIGR02315 ABC_phnC phosphonate 99.6 3.4E-15 7.3E-20 140.3 5.5 173 15-206 19-230 (243)
72 TIGR01186 proV glycine betaine 99.6 1.5E-15 3.3E-20 150.5 3.2 172 15-205 10-213 (363)
73 PRK11153 metN DL-methionine tr 99.5 1.6E-15 3.4E-20 149.8 3.2 172 15-205 22-224 (343)
74 cd03298 ABC_ThiQ_thiamine_tran 99.5 2E-15 4.3E-20 138.8 3.6 168 16-202 16-209 (211)
75 PRK11432 fbpC ferric transport 99.5 7.6E-16 1.7E-20 152.3 0.8 172 15-205 23-220 (351)
76 cd03301 ABC_MalK_N The N-termi 99.5 1.5E-15 3.3E-20 139.7 2.5 170 15-203 17-212 (213)
77 PRK11000 maltose/maltodextrin 99.5 2.2E-15 4.7E-20 150.2 3.5 172 15-205 20-217 (369)
78 COG1124 DppF ABC-type dipeptid 99.5 7.2E-15 1.6E-19 134.7 6.5 172 15-205 24-225 (252)
79 PRK11614 livF leucine/isoleuci 99.5 4.3E-15 9.2E-20 139.2 5.2 172 15-206 22-221 (237)
80 cd03219 ABC_Mj1267_LivG_branch 99.5 2.4E-15 5.1E-20 140.7 3.4 171 15-205 17-226 (236)
81 cd03218 ABC_YhbG The ABC trans 99.5 3.4E-15 7.3E-20 139.3 4.3 171 15-205 17-216 (232)
82 cd03215 ABC_Carb_Monos_II This 99.5 6E-15 1.3E-19 132.8 5.8 151 16-199 18-181 (182)
83 cd03258 ABC_MetN_methionine_tr 99.5 1.8E-15 4E-20 141.2 2.4 172 15-205 22-224 (233)
84 PRK10851 sulfate/thiosulfate t 99.5 5.1E-15 1.1E-19 146.6 5.5 172 15-205 19-220 (353)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 2.2E-15 4.9E-20 139.2 2.8 165 15-199 21-217 (218)
86 cd03229 ABC_Class3 This class 99.5 4.8E-15 1E-19 132.9 4.8 150 15-198 17-177 (178)
87 TIGR02673 FtsE cell division A 99.5 1.9E-15 4.1E-20 139.2 2.2 164 15-198 19-213 (214)
88 cd03266 ABC_NatA_sodium_export 99.5 3.3E-15 7.2E-20 138.0 3.8 168 15-202 22-216 (218)
89 cd03269 ABC_putative_ATPase Th 99.5 8.2E-15 1.8E-19 134.7 6.2 168 15-202 17-208 (210)
90 cd03225 ABC_cobalt_CbiO_domain 99.5 3.7E-15 8E-20 137.0 3.6 164 15-198 18-210 (211)
91 COG4604 CeuD ABC-type enteroch 99.5 1.5E-14 3.3E-19 128.4 7.2 174 15-207 18-221 (252)
92 TIGR03411 urea_trans_UrtD urea 99.5 2.2E-15 4.7E-20 141.5 1.8 170 15-205 19-225 (242)
93 cd03257 ABC_NikE_OppD_transpor 99.5 5.4E-15 1.2E-19 137.4 4.5 169 15-202 22-226 (228)
94 PRK09493 glnQ glutamine ABC tr 99.5 9.4E-15 2E-19 137.1 6.1 172 15-206 18-220 (240)
95 TIGR03258 PhnT 2-aminoethylpho 99.5 2.9E-15 6.3E-20 148.7 2.7 172 15-205 22-222 (362)
96 cd03294 ABC_Pro_Gly_Bertaine T 99.5 2.3E-15 5E-20 143.8 1.9 172 15-205 41-244 (269)
97 TIGR01277 thiQ thiamine ABC tr 99.5 4E-15 8.6E-20 137.2 3.2 171 15-204 15-211 (213)
98 cd03260 ABC_PstB_phosphate_tra 99.5 6.2E-15 1.3E-19 137.1 4.6 176 15-206 17-224 (227)
99 cd03233 ABC_PDR_domain1 The pl 99.5 7.8E-15 1.7E-19 134.3 5.1 161 15-202 24-200 (202)
100 PRK11831 putative ABC transpor 99.5 6E-15 1.3E-19 140.9 4.3 172 15-205 24-227 (269)
101 PRK10070 glycine betaine trans 99.5 2.8E-15 6.2E-20 150.3 2.1 172 15-205 45-248 (400)
102 PRK09452 potA putrescine/sperm 99.5 3.5E-15 7.5E-20 148.7 2.7 171 16-205 32-228 (375)
103 PRK13652 cbiO cobalt transport 99.5 3.2E-15 6.9E-20 143.4 2.2 174 14-206 20-222 (277)
104 TIGR02142 modC_ABC molybdenum 99.5 5.3E-15 1.2E-19 146.7 3.8 171 16-205 15-215 (354)
105 PRK11300 livG leucine/isoleuci 99.5 4.2E-15 9.2E-20 140.7 2.9 172 15-205 22-237 (255)
106 cd03235 ABC_Metallic_Cations A 99.5 9E-15 2E-19 134.7 4.9 164 15-198 16-208 (213)
107 PRK11144 modC molybdate transp 99.5 5.6E-15 1.2E-19 146.4 3.5 170 16-205 16-212 (352)
108 cd03214 ABC_Iron-Siderophores_ 99.5 7E-15 1.5E-19 132.1 3.8 152 15-202 16-178 (180)
109 PRK10895 lipopolysaccharide AB 99.5 1.4E-14 3.1E-19 135.9 6.0 171 15-205 20-220 (241)
110 COG1129 MglA ABC-type sugar tr 99.5 3E-14 6.4E-19 144.2 8.6 173 13-205 23-228 (500)
111 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 4.3E-15 9.2E-20 139.1 2.4 171 15-205 18-215 (236)
112 PRK11231 fecE iron-dicitrate t 99.5 1E-14 2.2E-19 138.2 4.8 171 15-205 19-221 (255)
113 COG3845 ABC-type uncharacteriz 99.5 6.1E-14 1.3E-18 139.7 10.4 171 13-203 19-221 (501)
114 PRK13641 cbiO cobalt transport 99.5 4.6E-15 1E-19 143.0 2.5 172 14-205 23-228 (287)
115 PRK11607 potG putrescine trans 99.5 4.9E-15 1.1E-19 147.8 2.7 171 16-205 37-233 (377)
116 PRK13647 cbiO cobalt transport 99.5 5.8E-15 1.3E-19 141.4 3.0 172 15-206 22-222 (274)
117 cd03264 ABC_drug_resistance_li 99.5 4.9E-15 1.1E-19 136.3 2.4 166 15-202 17-209 (211)
118 PRK10908 cell division protein 99.5 7.6E-15 1.6E-19 136.1 3.6 167 15-201 19-216 (222)
119 TIGR03740 galliderm_ABC gallid 99.5 1.1E-14 2.3E-19 135.2 4.5 173 15-207 17-209 (223)
120 PRK10575 iron-hydroxamate tran 99.5 4.9E-15 1.1E-19 141.2 2.3 172 15-205 28-231 (265)
121 cd03295 ABC_OpuCA_Osmoprotecti 99.5 7.5E-15 1.6E-19 138.0 3.5 172 15-205 18-219 (242)
122 PRK13548 hmuV hemin importer A 99.5 6.3E-15 1.4E-19 139.9 3.0 172 15-205 19-224 (258)
123 PRK14250 phosphate ABC transpo 99.5 6.6E-15 1.4E-19 138.3 3.0 172 15-205 20-215 (241)
124 PRK10771 thiQ thiamine transpo 99.5 5.2E-15 1.1E-19 138.2 2.3 171 16-205 17-213 (232)
125 PRK13637 cbiO cobalt transport 99.5 3.6E-15 7.9E-20 143.8 1.2 173 15-206 24-229 (287)
126 cd03216 ABC_Carb_Monos_I This 99.5 3.4E-14 7.4E-19 125.6 7.3 145 15-201 17-161 (163)
127 PRK13636 cbiO cobalt transport 99.5 5.6E-15 1.2E-19 142.2 2.4 175 14-207 22-227 (283)
128 cd03262 ABC_HisP_GlnQ_permease 99.5 2.5E-14 5.5E-19 131.6 6.5 165 15-199 17-212 (213)
129 TIGR02769 nickel_nikE nickel i 99.5 1.2E-14 2.7E-19 138.4 4.4 172 15-205 28-234 (265)
130 TIGR03873 F420-0_ABC_ATP propo 99.5 9.6E-15 2.1E-19 138.4 3.5 171 15-205 18-220 (256)
131 PRK11264 putative amino-acid A 99.5 2.8E-14 6.2E-19 134.6 6.7 171 15-205 20-227 (250)
132 cd03213 ABCG_EPDR ABCG transpo 99.5 2.8E-14 6E-19 129.8 6.4 160 13-202 24-192 (194)
133 TIGR03005 ectoine_ehuA ectoine 99.5 5.9E-15 1.3E-19 139.5 2.0 172 15-205 17-230 (252)
134 PRK11629 lolD lipoprotein tran 99.5 5.7E-15 1.2E-19 138.0 1.8 171 15-205 26-228 (233)
135 COG1117 PstB ABC-type phosphat 99.5 6.4E-14 1.4E-18 126.0 8.4 176 13-205 22-231 (253)
136 cd03297 ABC_ModC_molybdenum_tr 99.5 1.2E-14 2.5E-19 134.1 3.7 167 16-202 16-212 (214)
137 PRK10253 iron-enterobactin tra 99.5 9.1E-15 2E-19 139.4 3.0 172 15-205 24-227 (265)
138 TIGR03415 ABC_choXWV_ATP choli 99.5 3.8E-15 8.2E-20 148.4 0.3 173 15-206 41-249 (382)
139 cd03292 ABC_FtsE_transporter F 99.5 1.4E-14 3.1E-19 133.3 4.2 165 15-199 18-213 (214)
140 PRK11248 tauB taurine transpor 99.5 8.5E-15 1.8E-19 138.8 2.4 171 15-204 18-213 (255)
141 PRK10619 histidine/lysine/argi 99.5 1.2E-14 2.5E-19 137.9 3.3 171 15-205 22-235 (257)
142 TIGR00972 3a0107s01c2 phosphat 99.5 1E-14 2.2E-19 137.4 2.9 170 15-205 18-226 (247)
143 TIGR02211 LolD_lipo_ex lipopro 99.5 8E-15 1.7E-19 135.7 2.1 167 15-201 22-220 (221)
144 cd03247 ABCC_cytochrome_bd The 99.5 2.1E-14 4.5E-19 128.7 4.5 152 15-202 19-176 (178)
145 cd03230 ABC_DR_subfamily_A Thi 99.5 4.3E-14 9.2E-19 126.2 6.4 148 15-199 17-172 (173)
146 PRK13643 cbiO cobalt transport 99.5 1.2E-14 2.7E-19 140.2 3.0 174 13-206 21-228 (288)
147 PRK13650 cbiO cobalt transport 99.5 7.8E-15 1.7E-19 140.9 1.5 171 15-205 24-223 (279)
148 PRK11124 artP arginine transpo 99.5 4.1E-14 9E-19 132.9 6.2 171 15-205 19-224 (242)
149 COG4175 ProV ABC-type proline/ 99.5 3.5E-14 7.5E-19 134.3 5.6 173 15-206 45-249 (386)
150 cd03228 ABCC_MRP_Like The MRP 99.5 2.1E-14 4.5E-19 128.0 3.9 144 15-198 19-170 (171)
151 TIGR03771 anch_rpt_ABC anchore 99.5 2.5E-14 5.4E-19 132.9 4.6 165 20-205 2-195 (223)
152 cd03222 ABC_RNaseL_inhibitor T 99.5 6.8E-14 1.5E-18 125.3 7.1 131 19-200 20-150 (177)
153 PRK10584 putative ABC transpor 99.5 1.2E-14 2.5E-19 135.4 2.1 167 15-201 27-225 (228)
154 cd03246 ABCC_Protease_Secretio 99.5 5.4E-14 1.2E-18 125.5 6.1 146 15-199 19-172 (173)
155 TIGR02770 nickel_nikD nickel i 99.5 1.4E-14 3E-19 135.2 2.3 171 16-205 4-209 (230)
156 PRK13635 cbiO cobalt transport 99.5 1.3E-14 2.8E-19 139.4 2.0 172 14-205 23-223 (279)
157 PRK10762 D-ribose transporter 99.5 4E-14 8.7E-19 146.8 5.9 173 15-207 21-226 (501)
158 TIGR00436 era GTP-binding prot 99.5 4.5E-14 9.8E-19 135.0 5.7 193 26-237 2-212 (270)
159 PRK13634 cbiO cobalt transport 99.5 1.2E-14 2.5E-19 140.5 1.6 173 14-205 23-229 (290)
160 PRK13646 cbiO cobalt transport 99.5 9.2E-15 2E-19 140.9 0.9 175 13-206 22-230 (286)
161 cd03300 ABC_PotA_N PotA is an 99.5 1.3E-14 2.9E-19 135.4 1.9 172 15-205 17-214 (232)
162 PRK15112 antimicrobial peptide 99.5 2.9E-14 6.2E-19 136.1 4.1 172 15-205 30-233 (267)
163 PRK15439 autoinducer 2 ABC tra 99.5 2.2E-14 4.9E-19 149.0 3.6 172 15-206 28-224 (510)
164 TIGR00968 3a0106s01 sulfate AB 99.5 2.2E-14 4.7E-19 134.5 3.1 172 15-205 17-214 (237)
165 PRK09984 phosphonate/organopho 99.5 2.7E-14 5.9E-19 135.8 3.6 173 15-206 21-237 (262)
166 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 7.3E-14 1.6E-18 121.1 5.8 128 14-199 16-144 (144)
167 PRK13649 cbiO cobalt transport 99.5 3.1E-14 6.6E-19 136.8 3.8 171 15-205 24-228 (280)
168 PRK13639 cbiO cobalt transport 99.5 3.4E-14 7.3E-19 136.2 4.0 173 14-206 18-221 (275)
169 cd03217 ABC_FeS_Assembly ABC-t 99.5 7.9E-14 1.7E-18 127.4 6.3 160 15-204 17-187 (200)
170 PRK14247 phosphate ABC transpo 99.5 3.1E-14 6.7E-19 134.4 3.6 175 15-205 20-228 (250)
171 PRK13644 cbiO cobalt transport 99.5 1.7E-14 3.6E-19 138.3 1.8 171 14-205 18-218 (274)
172 cd03267 ABC_NatA_like Similar 99.5 2.7E-14 5.8E-19 133.8 3.1 169 15-202 38-234 (236)
173 COG1136 SalX ABC-type antimicr 99.5 2.5E-14 5.4E-19 131.6 2.6 167 13-199 20-219 (226)
174 PRK14242 phosphate transporter 99.4 2.1E-14 4.6E-19 135.7 2.2 175 15-205 23-231 (253)
175 cd03234 ABCG_White The White s 99.4 1.1E-13 2.3E-18 128.8 6.7 171 13-203 22-225 (226)
176 PRK13638 cbiO cobalt transport 99.4 3.7E-14 8.1E-19 135.6 3.8 171 15-205 18-219 (271)
177 PRK13547 hmuV hemin importer A 99.4 3.6E-14 7.8E-19 135.8 3.6 172 15-205 18-238 (272)
178 TIGR01978 sufC FeS assembly AT 99.4 2.3E-14 5.1E-19 134.5 2.2 173 15-205 17-228 (243)
179 cd03237 ABC_RNaseL_inhibitor_d 99.4 3.7E-14 8.1E-19 133.7 3.5 156 19-198 20-192 (246)
180 PRK15056 manganese/iron transp 99.4 8.3E-14 1.8E-18 133.3 5.9 171 15-206 24-225 (272)
181 PRK09700 D-allose transporter 99.4 2E-14 4.3E-19 149.4 1.7 173 15-207 22-230 (510)
182 cd03251 ABCC_MsbA MsbA is an e 99.4 2.9E-14 6.2E-19 133.2 2.6 169 15-205 19-219 (234)
183 PRK15079 oligopeptide ABC tran 99.4 2.2E-14 4.9E-19 140.9 2.0 172 15-205 38-245 (331)
184 PRK13632 cbiO cobalt transport 99.4 1.4E-14 3.1E-19 138.5 0.6 171 15-205 26-225 (271)
185 PRK14269 phosphate ABC transpo 99.4 4.3E-14 9.4E-19 133.2 3.8 173 15-205 19-224 (246)
186 PRK14273 phosphate ABC transpo 99.4 2.5E-14 5.3E-19 135.4 2.1 175 15-205 24-232 (254)
187 cd03232 ABC_PDR_domain2 The pl 99.4 9.9E-14 2.1E-18 125.9 5.9 161 15-203 24-191 (192)
188 PRK13651 cobalt transporter AT 99.4 4E-14 8.6E-19 137.6 3.4 173 14-206 23-249 (305)
189 PRK11701 phnK phosphonate C-P 99.4 6.2E-14 1.3E-18 133.0 4.4 172 15-205 23-235 (258)
190 PRK03695 vitamin B12-transport 99.4 9.3E-14 2E-18 131.2 5.5 170 15-205 13-216 (248)
191 PRK14267 phosphate ABC transpo 99.4 4.9E-14 1.1E-18 133.3 3.5 175 15-205 21-231 (253)
192 cd03299 ABC_ModC_like Archeal 99.4 3.3E-14 7.1E-19 133.1 2.2 172 15-205 16-213 (235)
193 PRK13648 cbiO cobalt transport 99.4 2.3E-14 4.9E-19 136.9 1.1 172 15-206 26-226 (269)
194 cd03252 ABCC_Hemolysin The ABC 99.4 4.7E-14 1E-18 132.1 3.2 169 15-205 19-219 (237)
195 cd03244 ABCC_MRP_domain2 Domai 99.4 6E-14 1.3E-18 129.9 3.8 167 14-204 20-219 (221)
196 PRK13645 cbiO cobalt transport 99.4 3E-14 6.4E-19 137.6 1.7 172 15-205 28-234 (289)
197 PRK14270 phosphate ABC transpo 99.4 6.1E-14 1.3E-18 132.5 3.7 175 15-205 21-229 (251)
198 PRK10982 galactose/methyl gala 99.4 1.7E-13 3.7E-18 141.8 7.3 172 15-206 15-218 (491)
199 cd03245 ABCC_bacteriocin_expor 99.4 5.7E-14 1.2E-18 129.9 3.4 165 15-202 21-218 (220)
200 TIGR01257 rim_protein retinal- 99.4 5.5E-14 1.2E-18 162.5 3.9 173 15-207 1956-2155(2272)
201 PRK13549 xylose transporter AT 99.4 3.5E-14 7.5E-19 147.4 1.8 173 15-207 22-228 (506)
202 PRK11288 araG L-arabinose tran 99.4 7E-14 1.5E-18 145.0 4.0 173 15-207 270-481 (501)
203 PRK13633 cobalt transporter AT 99.4 3.9E-14 8.5E-19 136.1 1.9 173 13-205 25-227 (280)
204 PRK14268 phosphate ABC transpo 99.4 7.4E-14 1.6E-18 132.5 3.7 175 15-205 29-236 (258)
205 PRK13631 cbiO cobalt transport 99.4 6.1E-14 1.3E-18 137.2 3.2 174 13-206 41-260 (320)
206 cd03253 ABCC_ATM1_transporter 99.4 5.7E-14 1.2E-18 131.3 2.9 168 15-205 18-218 (236)
207 PRK10744 pstB phosphate transp 99.4 7.5E-14 1.6E-18 132.6 3.8 175 15-205 30-238 (260)
208 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.4 1.2E-13 2.7E-18 129.3 5.2 169 15-205 20-220 (238)
209 COG4148 ModC ABC-type molybdat 99.4 2E-13 4.4E-18 127.2 6.4 164 24-207 24-214 (352)
210 cd03254 ABCC_Glucan_exporter_l 99.4 9.3E-14 2E-18 129.3 4.3 170 14-205 19-220 (229)
211 PRK13549 xylose transporter AT 99.4 6.7E-14 1.4E-18 145.3 3.6 173 15-207 279-490 (506)
212 PRK14248 phosphate ABC transpo 99.4 1.1E-13 2.3E-18 132.2 4.7 175 15-205 38-246 (268)
213 COG2884 FtsE Predicted ATPase 99.4 1.1E-13 2.5E-18 122.2 4.4 173 12-204 16-219 (223)
214 PRK10419 nikE nickel transport 99.4 9.8E-14 2.1E-18 132.5 4.1 173 15-206 29-236 (268)
215 PRK10418 nikD nickel transport 99.4 1.1E-13 2.4E-18 131.0 4.5 172 15-205 20-224 (254)
216 COG2274 SunT ABC-type bacterio 99.4 1.9E-13 4E-18 145.5 6.6 164 15-206 490-691 (709)
217 TIGR02982 heterocyst_DevA ABC 99.4 6.1E-14 1.3E-18 129.9 2.5 166 15-200 22-219 (220)
218 COG1160 Predicted GTPases [Gen 99.4 6E-13 1.3E-17 132.0 9.6 87 25-128 4-93 (444)
219 PRK14235 phosphate transporter 99.4 6.4E-14 1.4E-18 133.7 2.7 175 15-205 36-245 (267)
220 COG1122 CbiO ABC-type cobalt t 99.4 7.8E-14 1.7E-18 130.1 3.2 173 14-206 20-223 (235)
221 COG0488 Uup ATPase components 99.4 2.3E-13 5E-18 140.5 6.9 166 15-208 20-237 (530)
222 COG1119 ModF ABC-type molybden 99.4 3.2E-13 6.9E-18 124.1 7.1 168 15-204 48-255 (257)
223 PRK15177 Vi polysaccharide exp 99.4 1.5E-13 3.3E-18 126.8 5.0 165 17-207 6-188 (213)
224 PRK14262 phosphate ABC transpo 99.4 1E-13 2.2E-18 130.9 3.9 175 15-205 20-228 (250)
225 PRK14259 phosphate ABC transpo 99.4 1E-13 2.2E-18 132.5 3.9 167 15-197 30-228 (269)
226 PRK13640 cbiO cobalt transport 99.4 4.9E-14 1.1E-18 135.6 1.7 172 14-205 23-226 (282)
227 PRK11308 dppF dipeptide transp 99.4 1.2E-13 2.6E-18 135.6 4.4 172 15-205 32-238 (327)
228 TIGR02323 CP_lyasePhnK phospho 99.4 1.1E-13 2.5E-18 130.8 4.0 172 15-205 20-232 (253)
229 PRK14238 phosphate transporter 99.4 7.3E-14 1.6E-18 133.6 2.8 175 15-205 41-249 (271)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 1.7E-13 3.7E-18 127.4 5.1 163 15-203 39-223 (224)
231 cd01881 Obg_like The Obg-like 99.4 1.5E-12 3.2E-17 115.0 10.9 84 29-129 1-85 (176)
232 PRK14251 phosphate ABC transpo 99.4 1.6E-13 3.5E-18 129.5 5.0 175 15-205 21-229 (251)
233 PRK09700 D-allose transporter 99.4 9.9E-14 2.2E-18 144.2 3.6 170 15-204 280-491 (510)
234 PRK15494 era GTPase Era; Provi 99.4 3.2E-13 6.9E-18 133.2 7.0 195 20-237 41-264 (339)
235 PRK15439 autoinducer 2 ABC tra 99.4 9.6E-14 2.1E-18 144.3 3.4 170 16-205 281-486 (510)
236 cd03223 ABCD_peroxisomal_ALDP 99.4 2.5E-13 5.4E-18 120.5 5.4 144 15-197 18-162 (166)
237 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 9.7E-14 2.1E-18 149.2 3.3 163 15-206 470-668 (686)
238 PRK13543 cytochrome c biogenes 99.4 2.5E-13 5.4E-18 125.4 5.4 158 15-191 28-207 (214)
239 PRK13642 cbiO cobalt transport 99.4 6.4E-14 1.4E-18 134.4 1.4 173 14-206 23-224 (277)
240 PRK14239 phosphate transporter 99.4 1.1E-13 2.4E-18 130.7 3.0 172 15-205 22-230 (252)
241 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.4E-13 2.9E-18 148.6 4.1 164 15-206 496-695 (710)
242 PLN03211 ABC transporter G-25; 99.4 5.4E-13 1.2E-17 142.1 8.6 173 15-207 85-292 (659)
243 PRK10762 D-ribose transporter 99.4 1.2E-13 2.7E-18 143.1 3.6 172 15-206 269-479 (501)
244 PRK14237 phosphate transporter 99.4 1.1E-13 2.4E-18 132.1 2.8 176 15-206 37-246 (267)
245 PRK14240 phosphate transporter 99.4 1.2E-13 2.6E-18 130.4 3.0 175 15-205 20-228 (250)
246 PRK13546 teichoic acids export 99.4 1.7E-13 3.7E-18 130.6 4.0 165 15-205 41-226 (264)
247 PRK11022 dppD dipeptide transp 99.4 1.6E-13 3.4E-18 134.7 3.8 176 15-205 24-237 (326)
248 PRK14257 phosphate ABC transpo 99.4 9E-14 2E-18 136.5 2.0 176 15-206 99-308 (329)
249 PRK10247 putative ABC transpor 99.4 1.4E-13 3E-18 128.0 3.1 161 15-195 24-210 (225)
250 PRK14274 phosphate ABC transpo 99.4 1.4E-13 3.1E-18 130.7 3.1 175 15-205 29-237 (259)
251 PRK14256 phosphate ABC transpo 99.4 2.4E-13 5.2E-18 128.5 4.7 175 15-205 21-230 (252)
252 PRK11176 lipid transporter ATP 99.4 2.7E-13 5.8E-18 143.1 5.5 168 15-206 360-562 (582)
253 PRK15064 ABC transporter ATP-b 99.4 1.4E-13 3E-18 143.7 3.3 164 16-206 337-520 (530)
254 PRK14275 phosphate ABC transpo 99.4 2E-13 4.4E-18 131.6 4.1 172 16-205 57-264 (286)
255 PRK10261 glutathione transport 99.4 1.6E-13 3.5E-18 145.7 3.5 172 15-205 341-547 (623)
256 cd03248 ABCC_TAP TAP, the Tran 99.4 1.2E-13 2.5E-18 128.5 2.0 165 13-199 29-225 (226)
257 PRK14243 phosphate transporter 99.4 2.1E-13 4.5E-18 130.0 3.8 175 15-205 27-242 (264)
258 PRK10938 putative molybdenum t 99.4 3.8E-13 8.3E-18 139.1 6.1 168 15-205 20-218 (490)
259 COG1101 PhnK ABC-type uncharac 99.4 4.1E-13 8.9E-18 120.9 5.4 170 15-203 23-230 (263)
260 PRK13540 cytochrome c biogenes 99.4 6.1E-13 1.3E-17 121.4 6.7 129 15-157 18-168 (200)
261 PRK14272 phosphate ABC transpo 99.4 1.9E-13 4E-18 129.2 3.4 171 14-205 20-230 (252)
262 cd03231 ABC_CcmA_heme_exporter 99.4 5.1E-13 1.1E-17 122.1 6.2 157 15-191 17-195 (201)
263 PRK15134 microcin C ABC transp 99.4 1.2E-13 2.5E-18 144.2 2.1 171 15-205 303-509 (529)
264 PRK09473 oppD oligopeptide tra 99.4 2.2E-13 4.7E-18 133.8 3.8 172 15-205 33-245 (330)
265 cd03369 ABCC_NFT1 Domain 2 of 99.4 1.1E-12 2.3E-17 120.4 8.2 164 14-204 24-205 (207)
266 PRK14253 phosphate ABC transpo 99.4 2.4E-13 5.2E-18 128.3 3.9 176 14-205 19-227 (249)
267 PRK13541 cytochrome c biogenes 99.4 7.4E-13 1.6E-17 120.4 6.9 128 17-158 19-165 (195)
268 PRK14244 phosphate ABC transpo 99.4 2.3E-13 5E-18 128.6 3.7 175 15-205 22-231 (251)
269 PRK14245 phosphate ABC transpo 99.4 2E-13 4.4E-18 128.9 3.0 173 15-205 20-228 (250)
270 PRK14249 phosphate ABC transpo 99.4 3.2E-13 7E-18 127.6 4.3 170 15-205 21-229 (251)
271 PRK14241 phosphate transporter 99.4 2.5E-13 5.5E-18 128.9 3.6 175 15-205 21-236 (258)
272 TIGR01166 cbiO cobalt transpor 99.4 5.3E-13 1.1E-17 120.8 5.5 130 15-158 9-169 (190)
273 PRK14263 phosphate ABC transpo 99.4 2.3E-13 5.1E-18 129.4 3.3 175 15-205 25-239 (261)
274 TIGR01193 bacteriocin_ABC ABC- 99.4 2.3E-13 5E-18 146.8 3.6 166 15-206 491-692 (708)
275 PRK13538 cytochrome c biogenes 99.4 6.6E-13 1.4E-17 121.6 6.0 130 15-158 18-171 (204)
276 PRK15093 antimicrobial peptide 99.4 2.3E-13 5E-18 133.8 3.2 176 15-205 24-242 (330)
277 PRK11174 cysteine/glutathione 99.4 3.4E-13 7.4E-18 142.5 4.6 165 15-206 367-567 (588)
278 PRK09544 znuC high-affinity zi 99.4 3.1E-13 6.6E-18 127.9 3.8 165 15-205 21-203 (251)
279 PRK11147 ABC transporter ATPas 99.4 2.7E-13 5.9E-18 144.4 3.8 167 15-208 336-525 (635)
280 PRK14254 phosphate ABC transpo 99.4 2.7E-13 5.8E-18 130.7 3.4 176 15-205 56-263 (285)
281 PRK13545 tagH teichoic acids e 99.4 5.7E-13 1.2E-17 136.3 5.8 166 15-205 41-226 (549)
282 PRK14261 phosphate ABC transpo 99.4 3E-13 6.6E-18 127.9 3.6 175 15-205 23-231 (253)
283 PRK14271 phosphate ABC transpo 99.4 3.4E-13 7.3E-18 129.4 3.9 175 15-205 38-245 (276)
284 TIGR01189 ccmA heme ABC export 99.4 9.5E-13 2.1E-17 119.9 6.6 127 15-155 17-166 (198)
285 COG1132 MdlB ABC-type multidru 99.4 3.3E-13 7.2E-18 142.0 4.1 167 15-207 346-548 (567)
286 cd03250 ABCC_MRP_domain1 Domai 99.4 3.7E-13 8.1E-18 123.1 3.8 157 15-198 22-203 (204)
287 TIGR03375 type_I_sec_LssB type 99.4 2.5E-13 5.3E-18 146.3 2.9 166 15-206 482-683 (694)
288 TIGR02633 xylG D-xylose ABC tr 99.4 1.3E-12 2.7E-17 135.6 8.2 170 15-204 277-485 (500)
289 COG4988 CydD ABC-type transpor 99.4 5.8E-13 1.2E-17 135.5 5.3 173 12-207 335-539 (559)
290 PRK11288 araG L-arabinose tran 99.4 3.7E-13 8.1E-18 139.6 4.0 169 15-203 21-221 (501)
291 TIGR01257 rim_protein retinal- 99.4 2.2E-13 4.7E-18 157.7 2.3 169 16-205 948-1143(2272)
292 TIGR02633 xylG D-xylose ABC tr 99.3 1.2E-12 2.6E-17 135.7 7.5 171 15-205 18-224 (500)
293 PRK11819 putative ABC transpor 99.3 4.6E-13 9.9E-18 140.6 4.3 166 15-207 24-246 (556)
294 PRK14258 phosphate ABC transpo 99.3 2.4E-13 5.3E-18 129.3 1.8 177 15-205 24-239 (261)
295 PRK10790 putative multidrug tr 99.3 5.9E-13 1.3E-17 140.8 4.9 170 15-207 358-559 (592)
296 PRK14252 phosphate ABC transpo 99.3 5.6E-13 1.2E-17 127.0 4.3 175 15-205 33-243 (265)
297 PRK14264 phosphate ABC transpo 99.3 7.1E-13 1.5E-17 128.9 4.9 176 15-205 62-283 (305)
298 PRK14265 phosphate ABC transpo 99.3 3.5E-13 7.5E-18 129.2 2.6 176 15-206 37-253 (274)
299 TIGR01187 potA spermidine/putr 99.3 1.8E-13 3.8E-18 134.3 0.5 158 29-205 1-184 (325)
300 TIGR02203 MsbA_lipidA lipid A 99.3 5.4E-13 1.2E-17 140.4 4.2 169 15-205 349-550 (571)
301 TIGR00958 3a01208 Conjugate Tr 99.3 6.1E-13 1.3E-17 143.5 4.6 168 15-206 498-697 (711)
302 PRK09580 sufC cysteine desulfu 99.3 7.8E-13 1.7E-17 124.6 4.7 174 15-206 18-230 (248)
303 PRK14246 phosphate ABC transpo 99.3 4.8E-13 1E-17 127.0 3.2 171 15-206 27-236 (257)
304 PRK14236 phosphate transporter 99.3 5E-13 1.1E-17 127.9 3.2 175 15-205 42-250 (272)
305 cd03288 ABCC_SUR2 The SUR doma 99.3 4.9E-13 1.1E-17 126.9 3.1 168 15-205 38-237 (257)
306 PRK10982 galactose/methyl gala 99.3 1.5E-12 3.2E-17 134.8 6.9 169 15-203 265-472 (491)
307 PRK14255 phosphate ABC transpo 99.3 5.8E-13 1.3E-17 125.9 3.5 175 15-205 22-230 (252)
308 PRK14260 phosphate ABC transpo 99.3 2.7E-13 5.8E-18 128.8 1.2 173 15-206 24-238 (259)
309 TIGR03269 met_CoM_red_A2 methy 99.3 6.5E-13 1.4E-17 138.4 4.1 172 15-205 301-511 (520)
310 PRK13409 putative ATPase RIL; 99.3 5E-13 1.1E-17 140.7 3.3 165 19-209 360-540 (590)
311 COG4987 CydC ABC-type transpor 99.3 5E-13 1.1E-17 134.3 3.1 162 15-207 355-557 (573)
312 cd03289 ABCC_CFTR2 The CFTR su 99.3 8E-13 1.7E-17 126.6 4.3 169 14-206 20-220 (275)
313 cd00267 ABC_ATPase ABC (ATP-bi 99.3 2.2E-12 4.7E-17 113.1 6.7 141 15-198 16-156 (157)
314 cd03236 ABC_RNaseL_inhibitor_d 99.3 4.5E-13 9.8E-18 127.0 2.5 162 20-202 22-218 (255)
315 PRK14266 phosphate ABC transpo 99.3 4.2E-13 9.1E-18 126.7 2.3 175 15-205 20-228 (250)
316 PRK13657 cyclic beta-1,2-gluca 99.3 7.9E-13 1.7E-17 139.8 4.6 169 15-205 352-552 (588)
317 PRK10636 putative ABC transpor 99.3 3.2E-13 6.9E-18 143.8 1.4 163 15-207 329-513 (638)
318 TIGR01846 type_I_sec_HlyB type 99.3 5.4E-13 1.2E-17 143.6 3.1 166 15-206 474-675 (694)
319 PRK00089 era GTPase Era; Revie 99.3 1.3E-12 2.8E-17 126.2 5.3 193 25-236 6-218 (292)
320 PRK10261 glutathione transport 99.3 4E-13 8.6E-18 142.8 1.9 172 15-205 33-252 (623)
321 PRK13539 cytochrome c biogenes 99.3 2.5E-12 5.5E-17 118.0 7.0 130 15-158 19-169 (207)
322 PRK15134 microcin C ABC transp 99.3 8.7E-13 1.9E-17 137.7 4.3 178 14-205 25-240 (529)
323 TIGR03269 met_CoM_red_A2 methy 99.3 5.6E-13 1.2E-17 138.9 2.8 175 15-206 17-253 (520)
324 PRK11819 putative ABC transpor 99.3 7.8E-13 1.7E-17 138.8 3.9 164 16-206 342-528 (556)
325 PRK11160 cysteine/glutathione 99.3 5.9E-13 1.3E-17 140.3 2.9 168 15-205 357-556 (574)
326 TIGR03608 L_ocin_972_ABC putat 99.3 1.6E-12 3.5E-17 118.9 5.4 130 15-158 15-176 (206)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 8.8E-13 1.9E-17 138.3 4.2 166 15-207 22-244 (552)
328 PRK10636 putative ABC transpor 99.3 7.8E-13 1.7E-17 140.8 3.7 170 15-207 18-232 (638)
329 KOG0059 Lipid exporter ABCA1 a 99.3 2.8E-12 6.2E-17 140.9 8.0 173 14-207 581-783 (885)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 1.4E-12 3E-17 136.9 4.9 164 16-206 340-526 (552)
331 PRK15064 ABC transporter ATP-b 99.3 1.1E-12 2.4E-17 136.9 4.2 166 15-207 18-238 (530)
332 TIGR01192 chvA glucan exporter 99.3 8E-13 1.7E-17 139.6 3.1 170 15-206 352-553 (585)
333 TIGR02204 MsbA_rel ABC transpo 99.3 1.1E-12 2.3E-17 138.4 4.0 168 15-205 357-557 (576)
334 TIGR02324 CP_lyasePhnL phospho 99.3 2.2E-12 4.8E-17 119.7 5.7 158 15-191 25-219 (224)
335 TIGR01842 type_I_sec_PrtD type 99.3 2E-12 4.3E-17 135.5 5.6 171 15-206 335-537 (544)
336 TIGR00955 3a01204 The Eye Pigm 99.3 6.6E-12 1.4E-16 133.3 9.6 174 14-207 41-252 (617)
337 PRK10789 putative multidrug tr 99.3 1.3E-12 2.7E-17 137.6 4.1 169 15-205 332-532 (569)
338 CHL00131 ycf16 sulfate ABC tra 99.3 3.9E-12 8.4E-17 120.2 6.8 174 15-206 24-236 (252)
339 COG1123 ATPase components of v 99.3 3.4E-12 7.4E-17 130.2 6.8 173 14-205 307-513 (539)
340 KOG0057 Mitochondrial Fe/S clu 99.3 1.9E-12 4.1E-17 130.3 4.9 165 15-207 369-570 (591)
341 COG4608 AppF ABC-type oligopep 99.3 1E-12 2.2E-17 122.9 2.7 160 15-206 30-194 (268)
342 KOG0055 Multidrug/pheromone ex 99.3 2.6E-12 5.6E-17 140.3 5.9 169 15-206 370-571 (1228)
343 cd03290 ABCC_SUR1_N The SUR do 99.3 1.3E-12 2.7E-17 120.9 3.1 162 14-198 17-217 (218)
344 cd03291 ABCC_CFTR1 The CFTR su 99.3 2.1E-12 4.6E-17 124.2 4.6 163 15-205 54-241 (282)
345 PLN03232 ABC transporter C fam 99.3 3E-12 6.4E-17 147.7 6.5 165 15-206 1253-1453(1495)
346 TIGR02868 CydC thiol reductant 99.3 4.3E-12 9.3E-17 132.5 7.1 127 15-155 352-509 (529)
347 COG4525 TauB ABC-type taurine 99.3 3E-12 6.6E-17 113.8 4.5 171 14-203 21-216 (259)
348 cd01898 Obg Obg subfamily. Th 99.3 7.2E-12 1.6E-16 110.2 6.7 88 26-129 2-89 (170)
349 PLN03130 ABC transporter C fam 99.3 4.4E-12 9.6E-17 146.7 6.6 165 15-206 1256-1456(1622)
350 PLN03073 ABC transporter F fam 99.3 2.4E-12 5.2E-17 138.1 3.6 164 16-207 527-710 (718)
351 COG4674 Uncharacterized ABC-ty 99.2 4.4E-12 9.6E-17 112.7 4.1 172 15-207 22-231 (249)
352 COG4181 Predicted ABC-type tra 99.2 1.9E-11 4.1E-16 106.6 7.6 167 15-201 27-225 (228)
353 PRK11147 ABC transporter ATPas 99.2 3.4E-12 7.5E-17 136.0 3.5 73 123-207 165-239 (635)
354 KOG0058 Peptide exporter, ABC 99.2 4.4E-12 9.6E-17 131.6 4.2 165 15-205 485-685 (716)
355 COG0488 Uup ATPase components 99.2 2.5E-12 5.5E-17 132.8 1.5 164 15-207 339-521 (530)
356 TIGR00956 3a01205 Pleiotropic 99.2 1E-11 2.2E-16 142.2 6.2 178 15-209 780-991 (1394)
357 PF01926 MMR_HSR1: 50S ribosom 99.2 4.7E-12 1E-16 105.1 2.5 86 26-128 1-89 (116)
358 TIGR00957 MRP_assoc_pro multi 99.2 1.3E-11 2.8E-16 142.6 6.9 165 15-206 1303-1503(1522)
359 PRK10522 multidrug transporter 99.2 6.2E-12 1.3E-16 131.9 3.4 166 15-203 340-530 (547)
360 COG4138 BtuD ABC-type cobalami 99.2 3.5E-11 7.6E-16 105.3 7.3 171 14-205 15-215 (248)
361 PRK13409 putative ATPase RIL; 99.2 4.7E-12 1E-16 133.4 2.4 153 20-197 95-286 (590)
362 COG4619 ABC-type uncharacteriz 99.2 4.5E-11 9.7E-16 104.0 7.7 129 10-152 15-169 (223)
363 PTZ00243 ABC transporter; Prov 99.2 1.4E-11 3.1E-16 142.2 6.2 165 16-207 1328-1529(1560)
364 TIGR02857 CydD thiol reductant 99.2 2.1E-11 4.5E-16 127.3 6.7 127 15-155 339-497 (529)
365 PRK10535 macrolide transporter 99.2 5.3E-12 1.2E-16 134.7 2.2 172 15-207 25-228 (648)
366 cd03238 ABC_UvrA The excision 99.2 2.2E-11 4.7E-16 109.0 5.3 148 15-200 12-166 (176)
367 TIGR01194 cyc_pep_trnsptr cycl 99.2 9E-12 1.9E-16 130.8 3.2 165 16-202 360-550 (555)
368 COG0370 FeoB Fe2+ transport sy 99.2 3.8E-11 8.2E-16 124.3 7.4 87 25-129 4-92 (653)
369 PLN03140 ABC transporter G fam 99.2 2.5E-11 5.3E-16 139.0 6.2 173 15-206 182-422 (1470)
370 COG4167 SapF ABC-type antimicr 99.2 4.4E-11 9.6E-16 105.3 6.3 51 13-74 28-78 (267)
371 PRK10938 putative molybdenum t 99.2 1.4E-11 3E-16 127.6 3.5 170 15-203 277-484 (490)
372 COG0486 ThdF Predicted GTPase 99.2 2E-11 4.4E-16 121.5 4.2 94 20-130 213-308 (454)
373 PF00005 ABC_tran: ABC transpo 99.1 1.1E-11 2.4E-16 105.7 1.3 48 17-75 4-51 (137)
374 TIGR00956 3a01205 Pleiotropic 99.1 4.2E-11 9E-16 137.2 6.3 178 15-207 78-296 (1394)
375 PTZ00265 multidrug resistance 99.1 2E-11 4.3E-16 140.1 2.9 179 15-206 1185-1447(1466)
376 KOG0061 Transporter, ABC super 99.1 3.2E-10 6.9E-15 120.0 11.4 192 15-234 47-278 (613)
377 PLN03140 ABC transporter G fam 99.1 7.5E-11 1.6E-15 135.1 6.7 176 15-208 897-1107(1470)
378 COG1084 Predicted GTPase [Gene 99.1 6.9E-11 1.5E-15 112.7 5.3 64 23-103 167-230 (346)
379 COG0396 sufC Cysteine desulfur 99.1 7.9E-11 1.7E-15 107.3 5.4 54 15-77 21-74 (251)
380 COG0444 DppD ABC-type dipeptid 99.1 5.6E-11 1.2E-15 113.6 4.4 180 13-206 20-238 (316)
381 COG4618 ArpD ABC-type protease 99.1 1.2E-10 2.6E-15 116.5 6.6 167 15-207 353-556 (580)
382 COG1123 ATPase components of v 99.1 5.6E-11 1.2E-15 121.4 4.3 170 14-207 25-240 (539)
383 TIGR01271 CFTR_protein cystic 99.1 4.4E-11 9.4E-16 138.0 3.4 167 15-206 1236-1435(1490)
384 TIGR03156 GTP_HflX GTP-binding 99.1 9.4E-11 2E-15 116.1 4.9 91 23-129 188-279 (351)
385 COG2262 HflX GTPases [General 99.0 1.5E-10 3.2E-15 113.6 4.6 87 25-129 193-282 (411)
386 COG4133 CcmA ABC-type transpor 99.0 6.6E-10 1.4E-14 98.4 7.5 48 16-74 20-67 (209)
387 PLN03073 ABC transporter F fam 99.0 8.6E-11 1.9E-15 126.3 2.3 73 123-207 353-427 (718)
388 TIGR01271 CFTR_protein cystic 99.0 2.2E-10 4.7E-15 132.3 5.2 162 16-206 444-631 (1490)
389 PTZ00265 multidrug resistance 99.0 2.2E-10 4.7E-15 131.7 5.1 72 15-97 402-481 (1466)
390 KOG0062 ATPase component of AB 99.0 4E-10 8.8E-15 112.9 6.0 73 123-207 207-281 (582)
391 KOG0054 Multidrug resistance-a 99.0 4E-10 8.8E-15 125.8 6.6 165 15-206 1157-1357(1381)
392 COG4172 ABC-type uncharacteriz 99.0 4.3E-10 9.4E-15 109.8 5.8 171 16-207 305-512 (534)
393 TIGR00957 MRP_assoc_pro multi 99.0 1.4E-10 2.9E-15 134.3 2.7 166 15-207 655-846 (1522)
394 KOG0055 Multidrug/pheromone ex 99.0 5.3E-10 1.1E-14 122.6 6.4 164 15-206 1007-1208(1228)
395 PRK11058 GTPase HflX; Provisio 99.0 2.8E-10 6.2E-15 115.3 4.0 87 25-129 198-287 (426)
396 KOG1191 Mitochondrial GTPase [ 99.0 5.5E-10 1.2E-14 111.3 4.8 92 20-128 264-358 (531)
397 PF02824 TGS: TGS domain; Int 98.9 9.1E-10 2E-14 80.7 4.5 59 305-385 1-59 (60)
398 COG4598 HisP ABC-type histidin 98.9 1.8E-09 3.9E-14 95.1 6.6 171 15-205 23-235 (256)
399 TIGR00954 3a01203 Peroxysomal 98.9 1.5E-09 3.2E-14 116.2 6.3 154 15-196 469-652 (659)
400 KOG1423 Ras-like GTPase ERA [C 98.9 3E-09 6.4E-14 100.5 7.4 89 24-129 72-166 (379)
401 PTZ00243 ABC transporter; Prov 98.9 9.3E-10 2E-14 127.4 4.9 163 16-207 678-866 (1560)
402 PLN03130 ABC transporter C fam 98.9 1E-09 2.3E-14 127.3 4.0 162 15-207 634-824 (1622)
403 cd01878 HflX HflX subfamily. 98.8 2.7E-09 5.8E-14 97.3 4.4 61 25-101 42-102 (204)
404 PLN03232 ABC transporter C fam 98.8 2E-09 4.4E-14 124.5 4.0 162 15-207 634-824 (1495)
405 PRK09554 feoB ferrous iron tra 98.8 1.2E-08 2.6E-13 110.3 9.6 88 25-129 4-96 (772)
406 cd04164 trmE TrmE (MnmE, ThdF, 98.8 3.6E-09 7.8E-14 91.1 4.2 61 24-101 1-62 (157)
407 TIGR00450 mnmE_trmE_thdF tRNA 98.8 3.3E-09 7.2E-14 108.1 4.4 93 20-129 199-293 (442)
408 PRK05291 trmE tRNA modificatio 98.8 6.1E-09 1.3E-13 106.6 5.2 93 20-129 211-305 (449)
409 COG4161 ArtP ABC-type arginine 98.8 1.8E-08 3.8E-13 87.4 6.9 168 18-205 22-224 (242)
410 cd01868 Rab11_like Rab11-like. 98.8 2.6E-08 5.5E-13 87.2 8.1 60 25-99 4-63 (165)
411 COG1160 Predicted GTPases [Gen 98.8 7.2E-09 1.6E-13 103.3 5.0 90 23-129 177-271 (444)
412 KOG0056 Heavy metal exporter H 98.8 2.2E-08 4.7E-13 100.0 8.3 122 16-152 556-710 (790)
413 KOG0927 Predicted transporter 98.7 6.9E-09 1.5E-13 104.7 4.0 72 124-207 231-305 (614)
414 COG4107 PhnK ABC-type phosphon 98.7 4.2E-08 9.1E-13 86.1 8.0 45 15-70 23-67 (258)
415 cd01897 NOG NOG1 is a nucleola 98.7 2.2E-08 4.9E-13 87.8 6.4 58 26-100 2-59 (168)
416 COG4778 PhnL ABC-type phosphon 98.7 3.2E-08 6.8E-13 86.6 7.1 153 15-191 28-222 (235)
417 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 1.2E-08 2.7E-13 92.7 4.8 60 26-102 2-63 (196)
418 KOG0927 Predicted transporter 98.7 1.5E-08 3.2E-13 102.4 5.5 163 19-206 411-591 (614)
419 TIGR03594 GTPase_EngA ribosome 98.7 8.7E-09 1.9E-13 104.8 3.9 87 26-129 1-89 (429)
420 KOG0054 Multidrug resistance-a 98.7 1.7E-08 3.8E-13 113.0 5.8 167 13-207 536-727 (1381)
421 cd03280 ABC_MutS2 MutS2 homolo 98.7 8.6E-08 1.9E-12 87.5 9.4 144 15-203 18-171 (200)
422 COG4615 PvdE ABC-type sideroph 98.6 4.2E-08 9.1E-13 95.9 6.4 49 15-74 340-388 (546)
423 cd01879 FeoB Ferrous iron tran 98.6 1.2E-08 2.7E-13 88.2 2.5 56 29-101 1-56 (158)
424 cd04142 RRP22 RRP22 subfamily. 98.6 2.4E-07 5.3E-12 84.5 10.6 60 26-100 2-61 (198)
425 cd03270 ABC_UvrA_I The excisio 98.6 7.5E-08 1.6E-12 89.7 7.4 33 13-45 10-43 (226)
426 PRK00093 GTP-binding protein D 98.6 2.8E-08 6.2E-13 101.3 4.2 88 25-129 2-91 (435)
427 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 2.3E-07 4.9E-12 81.4 9.2 60 25-99 3-62 (166)
428 KOG0065 Pleiotropic drug resis 98.6 1.9E-07 4E-12 103.2 10.2 184 16-217 809-1027(1391)
429 cd01894 EngA1 EngA1 subfamily. 98.6 2E-08 4.4E-13 86.5 2.0 84 28-128 1-86 (157)
430 cd01895 EngA2 EngA2 subfamily. 98.6 8.2E-08 1.8E-12 83.8 5.8 61 25-102 3-64 (174)
431 PRK03003 GTP-binding protein D 98.6 5E-08 1.1E-12 100.6 4.9 89 24-129 38-128 (472)
432 KOG0066 eIF2-interacting prote 98.6 4.4E-08 9.5E-13 96.6 4.2 39 20-69 609-647 (807)
433 cd04163 Era Era subfamily. Er 98.6 4.4E-08 9.6E-13 84.6 3.7 61 24-101 3-64 (168)
434 cd04171 SelB SelB subfamily. 98.5 4.6E-08 9.9E-13 85.0 3.4 81 25-128 1-84 (164)
435 COG4136 ABC-type uncharacteriz 98.5 2E-07 4.3E-12 80.0 7.0 124 17-151 21-169 (213)
436 cd04119 RJL RJL (RabJ-Like) su 98.5 3.6E-07 7.8E-12 79.6 8.7 59 26-99 2-60 (168)
437 KOG0410 Predicted GTP binding 98.5 3.8E-08 8.1E-13 93.8 2.3 89 24-130 178-269 (410)
438 cd04178 Nucleostemin_like Nucl 98.5 1.7E-07 3.8E-12 83.6 6.4 55 24-98 117-172 (172)
439 PRK03003 GTP-binding protein D 98.5 1.4E-07 3E-12 97.3 6.2 86 24-128 211-303 (472)
440 cd00880 Era_like Era (E. coli 98.5 1.5E-07 3.2E-12 80.2 5.1 84 29-128 1-85 (163)
441 cd01861 Rab6 Rab6 subfamily. 98.5 6.9E-08 1.5E-12 83.9 3.1 59 26-99 2-60 (161)
442 cd04145 M_R_Ras_like M-Ras/R-R 98.5 8.3E-07 1.8E-11 77.2 9.7 59 25-99 3-61 (164)
443 cd03278 ABC_SMC_barmotin Barmo 98.5 2.6E-07 5.6E-12 84.3 6.5 30 17-47 16-45 (197)
444 PRK00093 GTP-binding protein D 98.5 1.6E-07 3.5E-12 95.8 5.6 90 23-129 172-266 (435)
445 cd03283 ABC_MutS-like MutS-lik 98.5 2.2E-07 4.8E-12 84.9 5.8 28 20-47 21-48 (199)
446 cd03279 ABC_sbcCD SbcCD and ot 98.5 3.9E-07 8.4E-12 84.1 7.4 59 131-198 151-209 (213)
447 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.6E-07 5.6E-12 80.9 5.7 55 24-98 102-157 (157)
448 COG5265 ATM1 ABC-type transpor 98.5 3E-07 6.5E-12 90.7 6.6 166 17-205 282-480 (497)
449 cd01849 YlqF_related_GTPase Yl 98.4 4.1E-07 8.9E-12 79.5 6.7 57 22-98 98-155 (155)
450 PRK09518 bifunctional cytidyla 98.4 1.1E-07 2.4E-12 102.7 3.8 88 25-129 276-365 (712)
451 cd01855 YqeH YqeH. YqeH is an 98.4 2.5E-07 5.4E-12 83.6 5.4 56 23-98 126-190 (190)
452 KOG2355 Predicted ABC-type tra 98.4 5.5E-07 1.2E-11 81.2 7.2 70 130-207 164-233 (291)
453 TIGR03594 GTPase_EngA ribosome 98.4 2.7E-07 5.8E-12 93.9 6.0 89 24-129 172-265 (429)
454 PRK09518 bifunctional cytidyla 98.4 2.5E-07 5.5E-12 100.0 6.0 86 25-129 451-543 (712)
455 smart00173 RAS Ras subfamily o 98.4 1.4E-06 3E-11 76.0 9.5 23 26-48 2-24 (164)
456 cd03243 ABC_MutS_homologs The 98.4 2E-07 4.2E-12 85.3 4.1 33 15-47 20-52 (202)
457 cd04138 H_N_K_Ras_like H-Ras/N 98.4 1.5E-06 3.2E-11 75.2 9.2 23 26-48 3-25 (162)
458 cd01853 Toc34_like Toc34-like 98.4 5.4E-07 1.2E-11 85.1 6.8 64 21-101 28-92 (249)
459 PRK04213 GTP-binding protein; 98.4 3.2E-07 7E-12 83.2 5.1 55 24-99 9-63 (201)
460 COG1245 Predicted ATPase, RNas 98.4 3.2E-07 7E-12 91.2 5.2 37 18-65 361-397 (591)
461 PRK00454 engB GTP-binding prot 98.4 2.8E-07 6.1E-12 83.0 4.5 57 24-100 24-82 (196)
462 COG1129 MglA ABC-type sugar tr 98.4 5.5E-07 1.2E-11 91.8 6.7 169 15-203 276-482 (500)
463 COG0218 Predicted GTPase [Gene 98.4 4.9E-07 1.1E-11 81.4 5.6 58 23-100 23-82 (200)
464 TIGR02858 spore_III_AA stage I 98.4 1E-06 2.2E-11 84.2 8.1 38 25-73 112-149 (270)
465 cd04107 Rab32_Rab38 Rab38/Rab3 98.4 1.7E-06 3.8E-11 78.7 9.4 23 26-48 2-24 (201)
466 TIGR03598 GTPase_YsxC ribosome 98.4 2.1E-07 4.6E-12 83.1 3.1 59 23-101 17-77 (179)
467 COG4178 ABC-type uncharacteriz 98.3 6.9E-07 1.5E-11 92.9 6.6 119 15-152 410-551 (604)
468 cd04175 Rap1 Rap1 subgroup. T 98.3 3.2E-06 7E-11 73.8 10.1 59 25-99 2-60 (164)
469 COG4172 ABC-type uncharacteriz 98.3 7E-07 1.5E-11 87.7 6.1 169 13-205 25-241 (534)
470 cd03272 ABC_SMC3_euk Eukaryoti 98.3 1E-06 2.3E-11 82.6 7.1 24 24-47 23-46 (243)
471 PRK15467 ethanolamine utilizat 98.3 3.3E-07 7.3E-12 80.4 3.0 72 26-128 3-74 (158)
472 cd00879 Sar1 Sar1 subfamily. 98.3 6.6E-07 1.4E-11 80.3 4.9 57 23-99 18-74 (190)
473 cd04122 Rab14 Rab14 subfamily. 98.3 2.5E-06 5.5E-11 74.8 8.3 24 25-48 3-26 (166)
474 cd04155 Arl3 Arl3 subfamily. 98.3 5.5E-07 1.2E-11 79.3 4.0 51 24-98 14-68 (173)
475 cd03240 ABC_Rad50 The catalyti 98.3 1.1E-06 2.5E-11 80.5 6.1 25 20-45 19-43 (204)
476 cd04160 Arfrp1 Arfrp1 subfamil 98.3 3.9E-07 8.4E-12 79.7 2.9 57 26-99 1-61 (167)
477 TIGR00691 spoT_relA (p)ppGpp s 98.3 8.3E-07 1.8E-11 95.1 5.8 65 303-389 360-424 (683)
478 TIGR00231 small_GTP small GTP- 98.3 3.1E-07 6.8E-12 78.1 2.1 59 25-98 2-60 (161)
479 COG3596 Predicted GTPase [Gene 98.3 3.9E-07 8.4E-12 85.5 2.8 89 23-128 38-127 (296)
480 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.4E-06 3E-11 84.1 6.7 60 22-101 119-179 (287)
481 cd04127 Rab27A Rab27a subfamil 98.3 3.5E-06 7.5E-11 74.8 8.7 24 25-48 5-28 (180)
482 cd04159 Arl10_like Arl10-like 98.3 5.4E-07 1.2E-11 77.2 3.2 23 27-49 2-24 (159)
483 cd01866 Rab2 Rab2 subfamily. 98.2 8.7E-07 1.9E-11 78.1 4.2 59 25-98 5-63 (168)
484 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 5.4E-07 1.2E-11 78.7 2.8 60 26-99 2-61 (168)
485 cd00154 Rab Rab family. Rab G 98.2 1E-06 2.2E-11 75.4 3.9 59 26-99 2-60 (159)
486 smart00175 RAB Rab subfamily o 98.2 6.7E-07 1.5E-11 77.7 2.8 59 26-99 2-60 (164)
487 TIGR03596 GTPase_YlqF ribosome 98.2 2.5E-06 5.4E-11 81.9 6.9 59 23-101 117-176 (276)
488 smart00178 SAR Sar1p-like memb 98.2 8.8E-07 1.9E-11 79.6 3.6 80 22-128 15-94 (184)
489 TIGR00437 feoB ferrous iron tr 98.2 6.5E-07 1.4E-11 94.6 3.1 54 31-101 1-54 (591)
490 cd03274 ABC_SMC4_euk Eukaryoti 98.2 5.7E-06 1.2E-10 76.3 8.2 21 25-45 26-46 (212)
491 cd04111 Rab39 Rab39 subfamily. 98.2 7.5E-06 1.6E-10 75.4 8.9 25 25-49 3-27 (211)
492 TIGR00991 3a0901s02IAP34 GTP-b 98.2 3.4E-06 7.5E-11 81.5 6.6 61 24-101 38-99 (313)
493 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.8E-06 8.1E-11 72.2 6.2 54 26-99 85-139 (141)
494 PF04548 AIG1: AIG1 family; I 98.2 2.2E-06 4.8E-11 79.0 5.0 60 26-102 2-63 (212)
495 cd04148 RGK RGK subfamily. Th 98.2 2.6E-05 5.7E-10 72.3 12.1 59 26-99 2-61 (221)
496 cd01862 Rab7 Rab7 subfamily. 98.1 1.3E-06 2.9E-11 76.6 3.1 24 26-49 2-25 (172)
497 cd04104 p47_IIGP_like p47 (47- 98.1 3E-06 6.4E-11 77.1 4.9 24 25-48 2-25 (197)
498 cd01863 Rab18 Rab18 subfamily. 98.1 2.4E-06 5.2E-11 74.2 4.1 24 26-49 2-25 (161)
499 cd04113 Rab4 Rab4 subfamily. 98.1 1.8E-06 3.9E-11 75.1 3.2 59 26-99 2-60 (161)
500 cd00881 GTP_translation_factor 98.1 2.3E-06 5E-11 76.0 4.0 24 26-49 1-24 (189)
No 1
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=1.1e-88 Score=670.31 Aligned_cols=379 Identities=65% Similarity=1.115 Sum_probs=348.6
Q ss_pred CCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceE
Q 016139 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (394)
Q Consensus 12 ~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~ 91 (394)
.+....+++...+.++||||.||+|||||||+|++..+.+++|||||++|+.|.+.+++.+++.++.++.|++.++.+++
T Consensus 9 ~~~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~ 88 (390)
T PTZ00258 9 EEKKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLD 88 (390)
T ss_pred cccchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeE
Confidence 35677888889999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016139 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (394)
Q Consensus 92 ~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~ 171 (394)
++|+||+..+.+.+.+++++|++.++.+|+++||+|+|+++++.|.++..||..+++.++.|+.++|+..++++++++.+
T Consensus 89 lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k 168 (390)
T PTZ00258 89 ITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTK 168 (390)
T ss_pred EEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhcc-cchhhHHHHHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHH
Q 016139 172 SMKRS-NDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAW 250 (394)
Q Consensus 172 ~~~~~-~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~ 250 (394)
..... ..........++++|..+|++|.+++..+|+++|.+.++.+.+++.||++|++|+++.++....+++++++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~ 248 (390)
T PTZ00258 169 KRKKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEW 248 (390)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHH
Confidence 53111 11233445788899999999999999899999999999999999999999999999766522345678888887
Q ss_pred HHhhCCCeEEEechHhhHHhcCC-ChhHHHHHHHhccc-cchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhh
Q 016139 251 VQEHGGEQIIPFSCALERNLADM-PPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQ 328 (394)
Q Consensus 251 ~~~~~~~~~v~~sa~~E~~l~~l-~~~~~~~~~~~~~~-~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~ 328 (394)
++.+.+.+++++||+.|.+|++| +++++.+||+.+|+ +++++++++++|++|+||+|||+||||+|||+|++||||+|
T Consensus 249 ~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~ 328 (390)
T PTZ00258 249 VGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQ 328 (390)
T ss_pred HHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHH
Confidence 76542468999999999999999 99999999999996 99999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEecCC
Q 016139 329 AAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSG 390 (394)
Q Consensus 329 ~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~~~ 390 (394)
|||+|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||+.
T Consensus 329 aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv~~ 390 (390)
T PTZ00258 329 AAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNVSK 390 (390)
T ss_pred HHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999963
No 2
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=2.6e-88 Score=660.66 Aligned_cols=362 Identities=49% Similarity=0.849 Sum_probs=338.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
+.++||||.||||||||||+||+..+.+++|||||++|+.|.+.+++.+++.++.++.|++.++.+++++|+||+.++.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 57899999999999999999999998889999999999999999999989999999999999999999999999999888
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHH
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~ 183 (394)
.+.+++++|++.++.+|+++||+|+|.++++.|..+..||.+++++++.|+.++|++.++++|+++.+....+. .....
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~-~~~~~ 160 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD-KEAKA 160 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-hhHHH
Confidence 88889999999999999999999999999999988899999999999999999999999999999987653322 33455
Q ss_pred HHHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCCCeEEEec
Q 016139 184 EHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFS 263 (394)
Q Consensus 184 ~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~s 263 (394)
...++++|...|++|++++...|++++++.++.+.+++.||++|++|++|.++. ..+++++++.+++.++ +.+++++|
T Consensus 161 e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~~-~~~~i~~s 238 (364)
T PRK09601 161 ELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLA-DGNPYVKKVREIAAKE-GAEVVVIC 238 (364)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccc-cccHHHHHHHHHHHHc-CCeEEEEE
Confidence 678889999999999998888999999999999999999999999999987653 2456788898888765 77899999
Q ss_pred hHhhHHhcCCChhHHHHHHHhccc-cchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccE
Q 016139 264 CALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFI 342 (394)
Q Consensus 264 a~~E~~l~~l~~~~~~~~~~~~~~-~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi 342 (394)
|..|.+|++|+++++.+||+.+|. +++++++++++|++||||+|||+|++|+|||||++||||+||||+|||||+||||
T Consensus 239 a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI 318 (364)
T PRK09601 239 AKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFI 318 (364)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccE
Confidence 999999999998999999999995 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 343 CAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 343 ~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
|||||+|+||++|||++.||++|++|++||||+|||||||+|||||
T Consensus 319 ~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 319 RAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred EEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999997
No 3
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=5.4e-87 Score=651.39 Aligned_cols=362 Identities=41% Similarity=0.639 Sum_probs=335.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+..+||||.||+|||||||+||+..+ ++++|||||++|+.|.+.+++.+++.++.+|.|++.++..++++|+||+.+++
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~ 182 (394)
+++.+++++|+++++.+|+++||+|+|.++++.|..+..||..++.+++.|+.++|+..++++++++.+.... . ....
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~-~-k~~~ 159 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG-G-KDKK 159 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-c-hhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876432 2 3345
Q ss_pred HHHHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhh--CCCeEE
Q 016139 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH--GGEQII 260 (394)
Q Consensus 183 ~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~v 260 (394)
....+++++..+|++|++++...+++++..+++.++++|.||++|++|++++++..+++.+...++ ++.++ .+..++
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~~~~~~~~~~ 238 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAAYSKGDPKVV 238 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhhcCcCCCeEE
Confidence 677899999999999999987788888889999999999999999999998776422244555555 66653 256789
Q ss_pred EechHhhHHhcCCChhHHHHHHHhccc-cc-hHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhhhhccchhhhh
Q 016139 261 PFSCALERNLADMPPDEAAKYCEENKV-QS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (394)
Q Consensus 261 ~~sa~~E~~l~~l~~~~~~~~~~~~~~-~~-~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~ 338 (394)
++||..|.++++|+++|+.+||+++|+ +| ++++|++..|++|+|++|||+|++|+|||||++|+||++|||+|||||+
T Consensus 239 ~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfe 318 (368)
T TIGR00092 239 FVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFE 318 (368)
T ss_pred EeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccc
Confidence 999999999999999999999999996 88 9999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 339 RGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 339 ~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
||||||||++|+||++|||++.||++|++|++||||+|||||||+|||||
T Consensus 319 kgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 319 TGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred cCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999996
No 4
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=4e-85 Score=613.94 Aligned_cols=384 Identities=63% Similarity=1.009 Sum_probs=357.1
Q ss_pred CCCccccCCCCCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhc
Q 016139 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (394)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~ 80 (394)
|+|++ .+ +..++.+||......+||||.||+||||+||+||......+||||||++|+.+.|.+++.|++.++..|
T Consensus 1 ~~~kk-~~---~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 1 MPPKK-DI---EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred CCccc-cc---ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhc
Confidence 66664 33 578999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred cCCCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHH
Q 016139 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (394)
Q Consensus 81 ~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~ 160 (394)
.|+..++..++++|++|+.++++.|.++||+|++++|.+|+|+||||||.+.++.|+.+.+||.+||+++++|+.++|++
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e 156 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLE 156 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc----hhhHHHHHHHHHHHHHhcCCC-c-eecCCCChhHHHHHHhhhhhcccCEeeecccchh
Q 016139 161 FMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGK-D-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (394)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~----h~~~~~~~l~~ri~~~L~~g~-~-~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~ 234 (394)
+++++++++.+....... ........+++++..+|.+++ + .+...|++++++++...++++.||++|++|+++.
T Consensus 157 ~l~k~~e~~~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~ 236 (391)
T KOG1491|consen 157 FLEKRLEKLEKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEH 236 (391)
T ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcc
Confidence 999999988876544432 445555678899988775554 4 3448999999999999999999999999999998
Q ss_pred hhhhhcccChhhHHHHHHhhC-CCeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCCC
Q 016139 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (394)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~~~~-~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~~ 313 (394)
+...+++.++.+++.|..++. +..++++|+..|.++..|++||+.+|+++.+..|+|.++|.+.|+.|+||.|||+||+
T Consensus 237 dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~ 316 (391)
T KOG1491|consen 237 DYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGED 316 (391)
T ss_pred hhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCc
Confidence 886677889999999987654 6789999999999999999999999999999889999999999999999999999999
Q ss_pred CeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 314 e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
|+|+|||++|++|++|||+|||||+++||.|+|+.|+||..|||+.++|..|+.+++||+|+||||||++||||.
T Consensus 317 eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491|consen 317 EVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred hheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 5
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-85 Score=628.67 Aligned_cols=364 Identities=48% Similarity=0.807 Sum_probs=339.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhcc-CCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~-~~~~~~~~i~~~D~~gl~~~ 101 (394)
++..+||||.||+|||||||+||...++++||||||++|+.|.+.+++.++..++.++. |++.++..++++|++||.++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 35789999999999999999999999888999999999999999999999999999999 68888999999999999999
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhccc--ch
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--DK 179 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~--~h 179 (394)
+++|+|+||+||+++|.+|+|+||||||++.++.|..+.+||..|+++++.||.+||++.++++|+++.+....++ .+
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k 160 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDK 160 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988774443 35
Q ss_pred hhHHHHHHHHHHHHHhcCCCceec---CCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCC
Q 016139 180 QLKIEHELCQRVKAWLQDGKDVRL---GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 256 (394)
Q Consensus 180 ~~~~~~~l~~ri~~~L~~g~~~~~---~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~ 256 (394)
.+.+...++..+...|.+++..+. ..|++++...++.+.+++.||++|++|++|.+... .+.+++.++++.+.. +
T Consensus 161 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~-~n~~~~~i~~~~~~~-~ 238 (372)
T COG0012 161 ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLAN-LNEYVKRLKELAAKE-N 238 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccc-hhHHHHHHHHHhhhc-C
Confidence 666777888999899999988653 56999999999999999999999999999987632 256799999987764 5
Q ss_pred CeEEEechHhhHHhcCCCh-hHHHHHHHhccc-cchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhhhhccch
Q 016139 257 EQIIPFSCALERNLADMPP-DEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIH 334 (394)
Q Consensus 257 ~~~v~~sa~~E~~l~~l~~-~~~~~~~~~~~~-~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~~A~~IH 334 (394)
.++|++||..|.+|++|++ +++.+|+..+|+ +++|++++.+.|.+|||++|||+|++|+|+|||++|+||+|+||.||
T Consensus 239 ~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih 318 (372)
T COG0012 239 AEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIH 318 (372)
T ss_pred CcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCccc
Confidence 7899999999999999987 889999999996 79999999999999999999999999999999999999999999999
Q ss_pred hhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 335 TDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 335 sD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
|||++|||+|+|++|+||+.+||+..|+.+|+.|++||||+|||||||+||||+
T Consensus 319 ~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 319 PDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred cchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999996
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=5.6e-57 Score=449.53 Aligned_cols=336 Identities=26% Similarity=0.392 Sum_probs=269.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEec----CCcchhhhhhhcc---CCCccccceEEEeccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQLFK---PKSAVPAFLEIHDIAG 97 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v----~g~~~~~l~~~~~---~~~~~~~~i~~~D~~g 97 (394)
.++||||.||+|||||||+||+....+++|||||++|+.|.+.+ ++.+++.++.... +....+.+++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 47999999999999999999999888899999999999999886 4445555433222 2334556799999999
Q ss_pred ccccccCCCCCchhhhhHHHhhhhHHhhhhccCCC----CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 016139 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP----DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (394)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~----~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~ 173 (394)
+..+.+.+.+++++|++.++.+|+++||+|++.++ .+.+ ++..||.+++++++.||.++|+..+++++.++.+..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999543 2344 778899999999999999999999999998887654
Q ss_pred hcccc-hh--hHHHHHHH----HHHHHHhc-CCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChh
Q 016139 174 KRSND-KQ--LKIEHELC----QRVKAWLQ-DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLP 245 (394)
Q Consensus 174 ~~~~~-h~--~~~~~~l~----~ri~~~L~-~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~ 245 (394)
..... .. .......+ ++|..+|+ .|.+.+...|+++++..++.+.+++.||++|++|+.|... .+.++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~---~~~~l~ 237 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPP---AEENIE 237 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhccc---chHHHH
Confidence 32210 00 11111122 66888887 5777777789999999999999999999999999998421 122344
Q ss_pred hHHHHHHhhCCCeEEEechHhhHHhcC---------------------CChhHH------HHHHHhccccchHHHHH-HH
Q 016139 246 KIHAWVQEHGGEQIIPFSCALERNLAD---------------------MPPDEA------AKYCEENKVQSALPKII-KT 297 (394)
Q Consensus 246 ~i~~~~~~~~~~~~v~~sa~~E~~l~~---------------------l~~~~~------~~~~~~~~~~~~l~~li-~~ 297 (394)
++.++ +...++++||..|.++.+ +++++. .+||..+|. +++++++ ++
T Consensus 238 ~i~~~----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~-~~~~~~i~~~ 312 (396)
T PRK09602 238 RLKEE----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG-TGVQEAINTA 312 (396)
T ss_pred HHHhc----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHH
Confidence 44442 345799999999998766 444331 267888887 8999999 99
Q ss_pred hhcccCcEEeecCCC----------CCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcc
Q 016139 298 GFSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKY 367 (394)
Q Consensus 298 ~~~~L~li~~fT~~~----------~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~ 367 (394)
+|++|+||+|||+++ ++.|||++++|+||+|||++|||||+++||||+. ++ +.
T Consensus 313 ~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--------------~~---~~ 375 (396)
T PRK09602 313 VFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID--------------AR---TK 375 (396)
T ss_pred HHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--------------cc---CC
Confidence 999999999999975 5677999999999999999999999999999993 23 45
Q ss_pred cccCCcceecCCCEEEEEE
Q 016139 368 KQEGKTYVVQDGDIIFFKF 386 (394)
Q Consensus 368 ~~~Gkdy~v~dgDii~~~f 386 (394)
|++|+||+|||||||+|.-
T Consensus 376 ~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 376 RRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred cccCCCcEecCCCEEEEEe
Confidence 9999999999999999973
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=2.9e-48 Score=368.23 Aligned_cols=273 Identities=51% Similarity=0.833 Sum_probs=246.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCCC
Q 016139 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (394)
Q Consensus 27 vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~~ 106 (394)
+||||.||||||||||+||+..+.+++|||||++|+.|.+.+++.+++.++.+|.|++.++.+++++|+||+.++.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999998888
Q ss_pred CCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHH
Q 016139 107 GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 186 (394)
Q Consensus 107 ~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~ 186 (394)
+++++|+.+++.+|+++||+|+|+++++.|..+.+||.+|+++++.|+.++|+..++++++++.+...... ........
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~-~~~~~e~~ 159 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD-KEAKAELE 159 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 89999999999999999999999999999998899999999999999999999999999999887653322 34556778
Q ss_pred HHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCCCeEEEechHh
Q 016139 187 LCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCAL 266 (394)
Q Consensus 187 l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~sa~~ 266 (394)
++++|..+|++|++++...|++++.+.++.+++++.||++|++|+++.++. ..+.+..++..+... .+.+++++||..
T Consensus 160 ~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~-~~~~~~~~~~~~~~~-~~~~~i~~sa~~ 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLA-NGNNKVLKVREIAAK-EGAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhc-cccHHHHHHHHHHhc-CCCeEEEeeHHH
Confidence 899999999999999888999999999999999999999999999997663 223444555555544 367899999999
Q ss_pred hHHhcCCChhHHHHHHHhccc-cchHHHHHHHhhccc
Q 016139 267 ERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAI 302 (394)
Q Consensus 267 E~~l~~l~~~~~~~~~~~~~~-~~~l~~li~~~~~~L 302 (394)
|.+|++|+++|+.+|++++|+ +|+|++||+++|++|
T Consensus 238 E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 999999999999999999996 889999999999986
No 8
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=7.7e-44 Score=272.08 Aligned_cols=84 Identities=67% Similarity=1.122 Sum_probs=76.5
Q ss_pred cEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEE
Q 016139 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 383 (394)
Q Consensus 304 li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~ 383 (394)
|++|||+||+|+||||+++|+||++|||+|||||+||||+|||++|+||+++||++.+|++|++|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 016139 384 FKFN 387 (394)
Q Consensus 384 ~~f~ 387 (394)
||||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 9
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=3.6e-43 Score=266.49 Aligned_cols=83 Identities=80% Similarity=1.269 Sum_probs=82.2
Q ss_pred cEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEE
Q 016139 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 383 (394)
Q Consensus 304 li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~ 383 (394)
|++|||+||+|+|||||++|+||+||||+|||||+||||+|||++|+||++|||+++||++|++|++||||+||||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 016139 384 FKF 386 (394)
Q Consensus 384 ~~f 386 (394)
|||
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 997
No 10
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=8.7e-43 Score=327.06 Aligned_cols=287 Identities=26% Similarity=0.347 Sum_probs=219.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.++++||+|++|||||||.||+...++++|||||+.|..|.+.+.| .+++++|+||+..+++.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~gas~ 126 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGASS 126 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccCccc
Confidence 5899999999999999999999999999999999999999999998 56999999999999999
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH-Hhhhcccc--hhh
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSND--KQL 181 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~--h~~ 181 (394)
+.+.|.+++..+|+||+++.|+|++. |...++.+.+|+....+..-++ ...+. +....++- +..
T Consensus 127 g~grG~~vlsv~R~ADlIiiVld~~~------------~~~~~~~i~~ELe~~GIrlnk~-~p~V~I~kk~~gGI~i~~t 193 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFE------------DPHHRDIIERELEDVGIRLNKR-PPDVTIKKKESGGIRINGT 193 (365)
T ss_pred CCCCcceeeeeeccCCEEEEEEecCC------------ChhHHHHHHHHHHhcCeEecCC-CCceEEEEeccCCEEEecc
Confidence 99999999999999999999888864 2224677777666555432111 11111 00001110 110
Q ss_pred HHHH-HHHHHHHHHhcCCCce-----ecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhC
Q 016139 182 KIEH-ELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHG 255 (394)
Q Consensus 182 ~~~~-~l~~ri~~~L~~g~~~-----~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~ 255 (394)
..+. --.+.|..+|.+.++. ..+++|.+++... -+....++|.+|++|+.|..- .+.+....+.
T Consensus 194 ~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~-l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~-- 263 (365)
T COG1163 194 GPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDA-LEGNRVYKPALYVVNKIDLPG-------LEELERLARK-- 263 (365)
T ss_pred cccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHH-HhhcceeeeeEEEEecccccC-------HHHHHHHHhc--
Confidence 0110 1134566777766653 3467887775322 124468999999999997531 2233333322
Q ss_pred CCeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCCC----CeeeEEecCCCChhhhhc
Q 016139 256 GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD----EVKCWQIRRQTKAPQAAG 331 (394)
Q Consensus 256 ~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~~----e~raw~i~~gsta~~~A~ 331 (394)
...+++||.... ++++|.+.+|+.|+||++||+.|. ...|..+++|||+.|+|.
T Consensus 264 -~~~v~isa~~~~---------------------nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~ 321 (365)
T COG1163 264 -PNSVPISAKKGI---------------------NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCR 321 (365)
T ss_pred -cceEEEecccCC---------------------CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHH
Confidence 257899987643 488999999999999999999864 447999999999999999
Q ss_pred cchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEE
Q 016139 332 TIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 385 (394)
Q Consensus 332 ~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~ 385 (394)
+||+||.+.|.||.||+ +++|+.| |++|.||+|+|+|||+|+
T Consensus 322 ~IH~~l~~~FryA~VWG----------kSvk~~~--QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 322 KIHRDLVENFRYARVWG----------KSVKHPG--QRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred HHHHHHHHhcceEEEec----------cCCCCCc--cccCcCcCccCCCeEEEe
Confidence 99999999999999999 8999998 999999999999999997
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.97 E-value=3e-30 Score=250.60 Aligned_cols=248 Identities=29% Similarity=0.436 Sum_probs=191.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEec----CCcchhhhhhh-----ccCCCccccceEEEeccc
Q 016139 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (394)
Q Consensus 27 vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v----~g~~~~~l~~~-----~~~~~~~~~~i~~~D~~g 97 (394)
+||||.||+|||||||+||+....+++|||||++|+.|.+.+ ++.+++.++.. +.+.+.+ .++++|+||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v--~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYV--PVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcc--eEEEEECCC
Confidence 589999999999999999999888899999999999999886 55667666532 1222223 499999999
Q ss_pred ccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCC---eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 016139 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (394)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~---vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (394)
+..+++++.+++++|++.++.+|+++||+|++.+.+ +.|..+..||..+++++..|+.+||+..+++++.++.+...
T Consensus 79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~ 158 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD 158 (318)
T ss_pred CCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888899999999999999999999996544 46778889999999999999999999999999998886543
Q ss_pred cccc---hhhHHHHHHH----HHHHHHhcCCC-ceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhh
Q 016139 175 RSND---KQLKIEHELC----QRVKAWLQDGK-DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPK 246 (394)
Q Consensus 175 ~~~~---h~~~~~~~l~----~ri~~~L~~g~-~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~ 246 (394)
.+.. ........++ ++|..+|++|. ......|++.+++.+..+++++.||++|++|+.|.. . .+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~--~-~~~~~~~ 235 (318)
T cd01899 159 AEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIP--D-AENNISK 235 (318)
T ss_pred cCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHcc--C-hHHHHHH
Confidence 3211 1122223344 77888887766 444567999999999999889999999999999842 1 1122222
Q ss_pred HHHHHHhhCCCeEEEechHhhHHhcCCChhHHHHHH
Q 016139 247 IHAWVQEHGGEQIIPFSCALERNLADMPPDEAAKYC 282 (394)
Q Consensus 247 i~~~~~~~~~~~~v~~sa~~E~~l~~l~~~~~~~~~ 282 (394)
+.. .....+++++||..|.++.+|.+++..+|+
T Consensus 236 l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 236 LRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 222 223457999999999988888544566664
No 12
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-30 Score=234.86 Aligned_cols=285 Identities=20% Similarity=0.328 Sum_probs=207.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..++++||.|.+|||||+..||+...++++|.|||+....|.+.++| +.++++|+||++.+++
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEGAS 124 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCcccccccc
Confidence 46999999999999999999999988899999999999999999998 4599999999999999
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhccc-----c
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----D 178 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~ 178 (394)
++.+.|.+..+..+.+|+++.|+||... ...-.++..|+..-.+..-++..+...+....++ +
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~------------e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T 192 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS------------EDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTT 192 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc------------hhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeee
Confidence 9999999998889999999888777421 1123344444443333211111110001000111 1
Q ss_pred hhhH-HHHHHHHHHHHHhcCCCc-----eecCCCChhHH-HHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHH
Q 016139 179 KQLK-IEHELCQRVKAWLQDGKD-----VRLGDWKAADI-EILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWV 251 (394)
Q Consensus 179 h~~~-~~~~l~~ri~~~L~~g~~-----~~~~~~~~~e~-e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~ 251 (394)
-.+. --+.+ +..+|.+.++ ++..+.|.++. ..+ .+...+-+++|+.|+.|.- .++++...+
T Consensus 193 ~~lT~~~ek~---i~~ILheykI~Naevl~ReD~t~DdfIDvi--~gnr~Y~~ClYvYnKID~v-------s~eevdrlA 260 (364)
T KOG1486|consen 193 VPLTHCDEKL---IYTILHEYKIHNAEVLFREDCTVDDFIDVI--EGNRVYIKCLYVYNKIDQV-------SIEEVDRLA 260 (364)
T ss_pred eccccccHHH---HHHHHHHHeeccceEEEecCCChHHHHHHH--hccceEEEEEEEeecccee-------cHHHHHHHh
Confidence 0000 01122 2344555443 34445676653 444 2556889999999998742 233555544
Q ss_pred HhhCCCeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCC----CCeeeEEecCCCChh
Q 016139 252 QEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP----DEVKCWQIRRQTKAP 327 (394)
Q Consensus 252 ~~~~~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~----~e~raw~i~~gsta~ 327 (394)
+. ++ .+++|+.+. | +|++|.+..|+.|+|.++||+.+ |...+.++++|+|+.
T Consensus 261 r~-Pn--svViSC~m~-----l----------------nld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve 316 (364)
T KOG1486|consen 261 RQ-PN--SVVISCNMK-----L----------------NLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVE 316 (364)
T ss_pred cC-CC--cEEEEeccc-----c----------------CHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHH
Confidence 32 23 356665542 2 58999999999999999999874 677899999999999
Q ss_pred hhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEE
Q 016139 328 QAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 385 (394)
Q Consensus 328 ~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~ 385 (394)
++|..||.||...|.||-||+ .+||+. .|++|-.|.+.|.|||.+-
T Consensus 317 ~~C~~iHr~l~~qfkyAlVWG----------tSakhs--PQrvgl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 317 DVCHRIHRTLAAQFKYALVWG----------TSAKHS--PQRVGLGHTLEDEDVVQIV 362 (364)
T ss_pred HHHHHHHHHHHHhhceeeEec----------cccccC--cceeccccccccccceeee
Confidence 999999999999999999999 888886 6999999999999999874
No 13
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.92 E-value=2.1e-26 Score=210.07 Aligned_cols=283 Identities=21% Similarity=0.336 Sum_probs=207.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
++|++|.|.+||||++.-|+|...+++.|-|||.....|.+.+.| +.+++.|+||+..++..+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhcccccC
Confidence 899999999999999999999988999999999999999999987 458999999999999999
Q ss_pred CCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH-Hhhhccc-----c-
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSN-----D- 178 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~-----~- 178 (394)
.+.+.+.+...|.|.+++.|+|++ .|+.+-.+++.|+.-..+..-++ ...+. +...+++ +
T Consensus 124 kgrg~qviavartcnli~~vld~~------------kp~~hk~~ie~eleg~girlnk~-pp~i~~kkKdkgGInlt~~~ 190 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVL------------KPLSHKKIIEKELEGFGIRLNKQ-PPNIGTKKKDKGGINLTGTH 190 (358)
T ss_pred CCCccEEEEEeecccEEEEEeecc------------CcccHHHHHHHhhhcceeeccCC-CCCccccccccCceeeecch
Confidence 999999888888998887776663 68888888888777655542222 11111 1111121 1
Q ss_pred hhhHHHHHHHHHHHHHhcCCCceecCCCChhHH-HHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCCC
Q 016139 179 KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADI-EILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGE 257 (394)
Q Consensus 179 h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~-e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~~ 257 (394)
..++.+..+|.+- .+-+.. +....+.|.++. ..+. +...+-|.+|++|+.+.-. ++++.-.. ...
T Consensus 191 LdlD~~rsil~ey-R~hsAd-i~Lr~DaT~DdLIdvVe--gnr~yVp~iyvLNkIdsIS-------iEELdii~---~ip 256 (358)
T KOG1487|consen 191 LDLDLQRSILSEY-RIHSAD-IALRFDATADDLIDVVE--GNRIYVPCIYVLNKIDSIS-------IEELDIIY---TIP 256 (358)
T ss_pred hhHHHHHHHHHHh-hhcchh-eeeecCcchhhhhhhhc--cCceeeeeeeeecccceee-------eeccceee---ecc
Confidence 2233344444333 111111 222233444442 3332 4457889999999987421 22222211 123
Q ss_pred eEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCC----CCeeeEEecC-CCChhhhhcc
Q 016139 258 QIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP----DEVKCWQIRR-QTKAPQAAGT 332 (394)
Q Consensus 258 ~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~----~e~raw~i~~-gsta~~~A~~ 332 (394)
..+++||..+++ ++.+.+.+++.|+|+++||..+ |-..+-.++. -+|+.|+|.+
T Consensus 257 havpISA~~~wn---------------------~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ 315 (358)
T KOG1487|consen 257 HAVPISAHTGWN---------------------FDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNK 315 (358)
T ss_pred ceeecccccccc---------------------hHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHH
Confidence 479999988775 7888999999999999999874 4445666665 4899999999
Q ss_pred chhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEE
Q 016139 333 IHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 385 (394)
Q Consensus 333 IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~ 385 (394)
||+++.+.|.+|-||+ .++|+.+ |++|++|++.|.|||.|.
T Consensus 316 ih~~~~~~fk~alvwg----------~s~kh~p--q~vg~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 316 IHKSILKQFKYALVWG----------SSVKHNP--QRVGKEHVLEDEDVVQIV 356 (358)
T ss_pred HHHHHHHhhhhheEec----------cccCcCh--hhcchhheeccchhhhhc
Confidence 9999999999999999 7889985 999999999999999874
No 14
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.85 E-value=6.6e-22 Score=151.73 Aligned_cols=65 Identities=31% Similarity=0.431 Sum_probs=59.8
Q ss_pred cEEeecCC-----------CCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCC
Q 016139 304 LIYFFTAG-----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGK 372 (394)
Q Consensus 304 li~~fT~~-----------~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gk 372 (394)
||++||+. +++.+||++++|+||+|+|+.||+||+++|++|+||+ .|++|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 57888854 5678999999999999999999999999999999997 499999
Q ss_pred cceecCCCEEEEEE
Q 016139 373 TYVVQDGDIIFFKF 386 (394)
Q Consensus 373 dy~v~dgDii~~~f 386 (394)
||+|+|||||+|+|
T Consensus 63 d~~l~d~DVv~i~~ 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEecCCCEEEEEC
Confidence 99999999999975
No 15
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=8.4e-21 Score=172.96 Aligned_cols=165 Identities=19% Similarity=0.334 Sum_probs=120.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh---hhccCCC-ccccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~~~~~-~~~~~i 90 (394)
......+++|+++|++|+|||||||+|++|+|. ++|++|.|.++|.++.+.. -.|.|.+ ..+..+
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccChhhhccCccC
Confidence 455667899999999999999999999999999 8999999999998876543 3688876 577788
Q ss_pred EEEeccccccc---ccCC-------------------------CCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCC
Q 016139 91 EIHDIAGLVRG---AHEG-------------------------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142 (394)
Q Consensus 91 ~~~D~~gl~~~---~~~~-------------------------~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~e 142 (394)
++.|..-+... .... .+.||+ +.++.... ..+.|++++|| |
T Consensus 88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnq--QKIQfisa------viHePeLlILD---E 156 (300)
T COG4152 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQ--QKIQFISA------VIHEPELLILD---E 156 (300)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhh--HHHHHHHH------HhcCCCEEEec---C
Confidence 88885543211 1100 011111 22222222 33699999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|++++|++|.+++...+..+ ......+..|+ |.|+.+++|||++ .+|..|+.+..|++.
T Consensus 157 PFSGLDPVN~elLk~~I~~l----k~~GatIifSs-H~Me~vEeLCD~l-lmL~kG~~V~~G~v~ 215 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFEL----KEEGATIIFSS-HRMEHVEELCDRL-LMLKKGQTVLYGTVE 215 (300)
T ss_pred CccCCChhhHHHHHHHHHHH----HhcCCEEEEec-chHHHHHHHhhhh-heecCCceEEeccHH
Confidence 99999999987765544322 22233443454 9999999999999 999999999998764
No 16
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=1e-19 Score=171.14 Aligned_cols=101 Identities=37% Similarity=0.628 Sum_probs=90.4
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEE
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
+..+...++.-..+|+||.||||||||+|+|+...+.+++|+|||++|.-|.+.+++ ..++++.
T Consensus 186 e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVA 249 (366)
T KOG1489|consen 186 ERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVA 249 (366)
T ss_pred eEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc----------------cceeEec
Confidence 344444555556889999999999999999999999999999999999999998887 3569999
Q ss_pred ecccccccccCCCCCchhhhhHHHhhhhHHhhhhccC
Q 016139 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (394)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~ 130 (394)
|+||++++++.+++++-+|++++..++.+++|+|++.
T Consensus 250 DiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~ 286 (366)
T KOG1489|consen 250 DIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSG 286 (366)
T ss_pred cCccccccccccCcccHHHHHHHHhhceEEEEEECCC
Confidence 9999999999999999999999999999999999864
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=4.2e-19 Score=166.10 Aligned_cols=174 Identities=21% Similarity=0.260 Sum_probs=128.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~-~~ 86 (394)
......++.|++++|+||||||||||+++|+|. ..|.+|.|.++|+++..++. .|.||. ..
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 455667899999999999999999999999999 78999999999998876442 689998 67
Q ss_pred ccceEEEecccccccccCCCC--Cchh----h---hhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAHEGQG--LGNS----F---LSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~--l~~~----~---l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
+..+++.|...+++.++.+.. +..+ . ++.++..+. .+.+++|+ ++|+++++| |
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD---E 164 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD---E 164 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC---C
Confidence 788999999999887765321 1111 1 111111111 26788888 999999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|++.||+-++-.++..+..+.+.. ...+ ....|+++...+.||++ .+|++|+++..|+..
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~---~~tv-v~vlHDlN~A~ryad~~-i~lk~G~i~a~G~p~ 224 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREK---GLTV-VMVLHDLNLAARYADHL-ILLKDGKIVAQGTPE 224 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhc---CCEE-EEEecCHHHHHHhCCEE-EEEECCeEEeecCcc
Confidence 999999998755444333222110 1111 11239999999999999 999999999987643
No 18
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=5.2e-19 Score=165.43 Aligned_cols=223 Identities=21% Similarity=0.294 Sum_probs=140.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
+++|+|+||+|||||+|+|+|....++++||+|..|..|.+.+.|. .++++|+||+.......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~-----------------~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA-----------------KIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe-----------------EEEEEECCCcccccccc
Confidence 6899999999999999999999877899999999999999988763 48999999998765544
Q ss_pred CCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhh-cccch---hh
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSNDK---QL 181 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~-~~~~h---~~ 181 (394)
.++..+++..++.+|++++|+|++ ++...++.+.+++....+. +.+....+.-... .++-. ..
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t------------~~~~~~~~~~~~l~~~gi~-l~~~~~~v~~~~~~~ggi~~~~~~ 131 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDAT------------KPEGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITSTV 131 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCC------------cchhHHHHHHHHHHHcCce-ecCCCCeEEEEEEecCCEEEeccC
Confidence 445556677788888888887774 2333455554444333331 1111100000000 00000 00
Q ss_pred HHHHHHHHHHHHHhcCCCce-----ecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCC
Q 016139 182 KIEHELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 256 (394)
Q Consensus 182 ~~~~~l~~ri~~~L~~g~~~-----~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~ 256 (394)
.....-.+.+..+|.+.++. ..+..+-++++.. -+....+.|+++++||.|.... +++..+.. .
T Consensus 132 ~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~-~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~---~ 200 (233)
T cd01896 132 PLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDV-IEGNRVYIPCLYVYNKIDLISI-------EELDLLAR---Q 200 (233)
T ss_pred CCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHH-HhCCceEeeEEEEEECccCCCH-------HHHHHHhc---C
Confidence 00001123444556555432 2356776665421 1255688999999999984211 12333222 2
Q ss_pred CeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecC
Q 016139 257 EQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 310 (394)
Q Consensus 257 ~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~ 310 (394)
..++.+||... .+++++.+.+++.|++|++||+
T Consensus 201 ~~~~~~SA~~g---------------------~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 201 PNSVVISAEKG---------------------LNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CCEEEEcCCCC---------------------CCHHHHHHHHHHHhCcEEEecC
Confidence 34788887653 2588899999999999999995
No 19
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=2e-18 Score=175.87 Aligned_cols=99 Identities=35% Similarity=0.629 Sum_probs=86.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEE
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
.+.+...+..-..|+|||.||||||||||+|++..+.+++|||||+.|+.|.+.+.+. .++++
T Consensus 149 ~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~-----------------~f~la 211 (500)
T PRK12296 149 ERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT-----------------RFTVA 211 (500)
T ss_pred eEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe-----------------EEEEE
Confidence 3444555556678999999999999999999999888899999999999999988752 48999
Q ss_pred ecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
|+||+..+++.+.+++..|++++..+|+++||+|+.
T Consensus 212 DtPGliegas~g~gLg~~fLrhieradvLv~VVD~s 247 (500)
T PRK12296 212 DVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCA 247 (500)
T ss_pred ECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCc
Confidence 999999888877788889999999999999999986
No 20
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=6.7e-19 Score=162.96 Aligned_cols=180 Identities=18% Similarity=0.255 Sum_probs=115.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-----hhh--hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~~--~~~~~~~~~ 87 (394)
.-....|++|+++|++|+|||||||++++|||. +.|++|.|.++|..-.. +.. ....|+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk--- 106 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK--- 106 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhh---
Confidence 445677899999999999999999999999999 78999999999864211 111 111111
Q ss_pred cceEEEecccc---------------------------------cccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCe
Q 016139 88 AFLEIHDIAGL---------------------------------VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDI 134 (394)
Q Consensus 88 ~~i~~~D~~gl---------------------------------~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~v 134 (394)
+-..||+|.+ .+.+....++|.++ ++..+-+++ ++|++
T Consensus 107 -~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRm--raeLaaaLL------h~p~V 177 (325)
T COG4586 107 -LQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRM--RAELAAALL------HPPKV 177 (325)
T ss_pred -heeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHH--HHHHHHHhc------CCCcE
Confidence 1233454422 11111111222221 112222233 69999
Q ss_pred EEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCChhHHHHH
Q 016139 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEIL 214 (394)
Q Consensus 135 l~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i 214 (394)
++|| ||+-++|++.++-+...+.... ++...++-.. +|++..+..+|+|| .+++.|+++++|+++ ...
T Consensus 178 LfLD---EpTvgLDV~aq~~ir~Flke~n---~~~~aTVllT-TH~~~di~~lc~rv-~~I~~Gqlv~dg~l~----~l~ 245 (325)
T COG4586 178 LFLD---EPTVGLDVNAQANIREFLKEYN---EERQATVLLT-THIFDDIATLCDRV-LLIDQGQLVFDGTLA----QLQ 245 (325)
T ss_pred EEec---CCccCcchhHHHHHHHHHHHHH---HhhCceEEEE-ecchhhHHHhhhhe-EEeeCCcEeecccHH----HHH
Confidence 9999 9999999999765544433322 2222333222 49999999999999 999999999999886 333
Q ss_pred HhhhhhcccCEeeeccc
Q 016139 215 NTFQLLTAKPVVYLVNM 231 (394)
Q Consensus 215 ~~~~~~~~kp~~~~~N~ 231 (394)
..|+ ..+.+.+.++.
T Consensus 246 ~~f~--~~k~~~~el~~ 260 (325)
T COG4586 246 EQFG--PYKEFSVELKQ 260 (325)
T ss_pred HHhC--CceEEEEEEcc
Confidence 3343 45555555553
No 21
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.8e-18 Score=164.71 Aligned_cols=127 Identities=34% Similarity=0.552 Sum_probs=103.7
Q ss_pred ccCCCCCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc
Q 016139 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (394)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~ 85 (394)
+..++.-+.+.....+.-=.-|||||.||||||||+++++...+.+++|||||+.|+-|.|.+.+.
T Consensus 141 a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-------------- 206 (369)
T COG0536 141 ATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-------------- 206 (369)
T ss_pred CCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--------------
Confidence 333333344555555555567899999999999999999999999999999999999999998552
Q ss_pred cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHH
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELR 155 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~ 155 (394)
..+.+.|+||++.+++.+.+++.+||+++..+.+++||+|+.... ..||..++..+..||.
T Consensus 207 --~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~EL~ 267 (369)
T COG0536 207 --ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRNELE 267 (369)
T ss_pred --CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCccc-------CCCHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999997322 1378777777665443
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=6.7e-19 Score=169.99 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=117.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh----h--hhhccCCC-cc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS-AV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l--~~~~~~~~-~~ 86 (394)
-......+++|+++||+||||||||||||+|+|. +.|++|.|.+.|.+... . ...|.|+. ..
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 3566778999999999999999999999999999 78999999999976543 1 12677776 45
Q ss_pred ccceEEEecccccccccCCC-----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 87 PAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+..+++.++..+....+... ...+..++.++..+ --+.++.|+ ++|++++|| ||+++
T Consensus 90 ~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD---EPt~G 166 (293)
T COG1131 90 YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD---EPTSG 166 (293)
T ss_pred CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCcC
Confidence 66777777655543222110 00111111111110 014455555 799999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+|+.........+..+. +-. ..+..+ +|.+++++.+||+| .+|++|++++.++.
T Consensus 167 LDp~~~~~~~~~l~~l~----~~g~~tvlis-sH~l~e~~~~~d~v-~il~~G~~~~~g~~ 221 (293)
T COG1131 167 LDPESRREIWELLRELA----KEGGVTILLS-THILEEAEELCDRV-IILNDGKIIAEGTP 221 (293)
T ss_pred CCHHHHHHHHHHHHHHH----hCCCcEEEEe-CCcHHHHHHhCCEE-EEEeCCEEEEeCCH
Confidence 99998644433322221 111 123233 39999999999999 99999999998843
No 23
>COG1159 Era GTPase [General function prediction only]
Probab=99.73 E-value=2e-18 Score=162.30 Aligned_cols=194 Identities=23% Similarity=0.267 Sum_probs=135.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+||||+||+|||||+|.|.|..+++ |+.|.||+....|.++.+. .++.++||||+....+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcch
Confidence 589999999999999999999999987 9999999999999988764 6799999999997754
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhccCCCCe---EEec---CCCCC----cchHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI---IHVD---DSVDP----VRDLEVISAEL-RLKDIEFMERRIEDVEK 171 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~~~~~v---l~ld---~~~eP----~~~ld~i~~el-~~~di~~l~k~l~~~~~ 171 (394)
. ++.+.......+..+|++++|+++.+...- .++. ...-| .+.+|.+..+. .+..++.+..... +..
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~-f~~ 148 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP-FKE 148 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC-cce
Confidence 3 333444566788999999999998642110 0000 00011 12333333222 1222222332222 223
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhHH-----HHHHhh-hhhcccCEeeecccchhhhh
Q 016139 172 SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (394)
Q Consensus 172 ~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e~-----e~i~~~-~~~~~kp~~~~~N~~~~~~~ 237 (394)
.+..|. .....+..|.+.+...|++|..+++ +.+|+.+. |++|+. .+.+..++||.+.+..+.+.
T Consensus 149 ivpiSA-~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~ 220 (298)
T COG1159 149 IVPISA-LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFE 220 (298)
T ss_pred EEEeec-cccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 333343 5677788999999999999999887 56777653 788888 77788999999988766553
No 24
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2.7e-17 Score=165.40 Aligned_cols=93 Identities=39% Similarity=0.629 Sum_probs=82.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
+..=..|||||.||||||||||+|++..+.+++|||||+.|+.|.+.+++. ..+.++|+||+..
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~laD~PGlie 218 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADIPGLIE 218 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC----------------ceEEEEECCCCcc
Confidence 333458999999999999999999999888899999999999999988631 3489999999998
Q ss_pred cccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+++.+.+++..|+++++.+++++||+|+.
T Consensus 219 ga~~~~gLg~~fLrhier~~llI~VID~s 247 (424)
T PRK12297 219 GASEGVGLGHQFLRHIERTRVIVHVIDMS 247 (424)
T ss_pred cccccchHHHHHHHHHhhCCEEEEEEeCC
Confidence 88888888899999999999999999875
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.1e-18 Score=158.76 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=120.1
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----hhhccCCCc---
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA--- 85 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~~~~~--- 85 (394)
.-+....++++|++++||||||||||||+++|+|+ +.|.+|.|.+.|++.... .-.|.||+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 44566778999999999999999999999999998 789999999998865433 347999962
Q ss_pred cccceEEEecccccccccCCC-C--------CchhhhhHHHhhhhH--------------Hhhhhcc-CCCCeEEecCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQ-G--------LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~-~--------l~~~~l~~l~~~d~i--------------l~vv~a~-~~~~vl~ld~~~ 141 (394)
....+++.|+..+......+. . ...+.++.+...+.. +.++||+ .+|++++||
T Consensus 88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD--- 164 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD--- 164 (254)
T ss_pred CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec---
Confidence 234578888887765443321 0 011112222222211 6788998 999999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||+.++|+-.+..+...+..+.+ + ...+ ...+|++..+...+|++ ..|+. ++++.|+.
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~---e-g~tI-l~vtHDL~~v~~~~D~v-i~Ln~-~~~~~G~~ 222 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQ---E-GKTV-LMVTHDLGLVMAYFDRV-ICLNR-HLIASGPP 222 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH---C-CCEE-EEEeCCcHHhHhhCCEE-EEEcC-eeEeccCh
Confidence 99999999997665554333322 1 2333 22249999999999999 66664 45555543
No 26
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=2.9e-19 Score=158.58 Aligned_cols=173 Identities=21% Similarity=0.357 Sum_probs=121.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~-~ 85 (394)
......+++|+++||+|||||||||.|.+++|+ +.|++|.|.++|.++..+. -.|.||+ .
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 445677899999999999999999999999999 8899999999999876543 3699998 6
Q ss_pred cccceEEEecccccccccC-CCC------Cchhhhh-----HHHhhhhH---------Hhhhhcc-CCCCeEEecCCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQG------LGNSFLS-----HIRAVDGI---------FHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~------l~~~~l~-----~l~~~d~i---------l~vv~a~-~~~~vl~ld~~~eP 143 (394)
++..+++-|+.-..-.... ... ..+.+++ +++..-+. +.++||+ .+|..++|| ||
T Consensus 90 IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD---EP 166 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD---EP 166 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec---CC
Confidence 6777888887655422211 100 0111222 22211111 5677777 799999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+.++|++. ..|++.+.+.+....--+ .-+.|+..+...+|||+ -++.+|++++.|+.+
T Consensus 167 FAGVDPia----V~dIq~iI~~L~~rgiGv-LITDHNVREtL~i~dRa-YIi~~G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIA----VIDIQRIIKHLKDRGIGV-LITDHNVRETLDICDRA-YIISDGKVLAEGSPE 224 (243)
T ss_pred ccCCCchh----HHHHHHHHHHHHhCCceE-EEccccHHHHHhhhheE-EEEecCeEEecCCHH
Confidence 99999988 344443333332111111 11249999999999999 889999999998643
No 27
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.7e-18 Score=152.60 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhh------cc-CCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL------FK-PKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~------~~-~~~~~~ 87 (394)
+.....+..|+++||+|+|||||||++++|.++ +.|++|.|+++|.+...-+.. .. .+..+|
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCCcChh
Confidence 455667889999999999999999999999999 889999999998765332221 11 222344
Q ss_pred cceEEEecccccccccC---C------------CCCchhhhhHHHhh----hhHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE---G------------QGLGNSFLSHIRAV----DGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~---~------------~~l~~~~l~~l~~~----d~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..++.-++..+....+. . .++..-...+.+.. .--+.+++|+ ++|+++++| ||++++
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD---EP~sGL 164 (245)
T COG4555 88 ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD---EPTSGL 164 (245)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc---CCCCCc
Confidence 44443333222111000 0 00000000000000 0014566776 799999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+...-.....+..++ .-.+.+..++ |.+.+++.+||++ .+|++|+++..++..
T Consensus 165 Di~~~r~~~dfi~q~k----~egr~viFSS-H~m~EvealCDrv-ivlh~Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLK----NEGRAVIFSS-HIMQEVEALCDRV-IVLHKGEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhh----cCCcEEEEec-ccHHHHHHhhheE-EEEecCcEEEcCCHH
Confidence 9998533333222211 1112222344 9999999999999 999999999988754
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=2.5e-17 Score=150.30 Aligned_cols=172 Identities=22% Similarity=0.268 Sum_probs=121.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh----------hccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~----------~~~~~~ 84 (394)
.....+|++|++++|+|++|+|||||+++|.|+ +.|++|.|.+.|.++..+++ .+..|.
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-----------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~ 93 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-----------LRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-----------CCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeec
Confidence 345677899999999999999999999999999 78999999999998866553 233344
Q ss_pred -ccccceEEEecccccccccCCCCCchhhhhH-----HHh-------hh-----------hHHhhhhcc-CCCCeEEecC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSH-----IRA-------VD-----------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~-----l~~-------~d-----------~il~vv~a~-~~~~vl~ld~ 139 (394)
..+..++++|+.++.-..+.. +.....+. +.. ++ --+.++||+ -+|+++++|
T Consensus 94 gALFssltV~eNVafplre~~~--lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D- 170 (263)
T COG1127 94 GALFSSLTVFENVAFPLREHTK--LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD- 170 (263)
T ss_pred cccccccchhHhhheehHhhcc--CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec-
Confidence 567788999988885333221 11111111 100 00 014566776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|++....+...+..+.+.+ ..+. ...+|++..+..+||++ .+|.+|++++.|+..
T Consensus 171 --EPtsGLDPI~a~~~~~LI~~L~~~l---g~T~-i~VTHDl~s~~~i~Drv-~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 171 --EPTSGLDPISAGVIDELIRELNDAL---GLTV-IMVTHDLDSLLTIADRV-AVLADGKVIAEGTPE 231 (263)
T ss_pred --CCCCCCCcchHHHHHHHHHHHHHhh---CCEE-EEEECChHHHHhhhceE-EEEeCCEEEEeCCHH
Confidence 9999999998654444333333221 1111 22349999999999999 999999999998754
No 29
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.69 E-value=2.3e-17 Score=125.88 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=64.6
Q ss_pred cEEeecCCC----CCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCC
Q 016139 304 LIYFFTAGP----DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDG 379 (394)
Q Consensus 304 li~~fT~~~----~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dg 379 (394)
||++||+.+ |..++.++|+|+|+.|+|.+||+||.+.|.+|.||+ .+++..| |++|.||+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g----------~s~~~~g--q~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWG----------SSVKHSP--QRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEec----------cCCcCCC--eECCCCCEecCC
Confidence 689999986 567899999999999999999999999999999999 6777776 999999999999
Q ss_pred CEEEEE
Q 016139 380 DIIFFK 385 (394)
Q Consensus 380 Dii~~~ 385 (394)
|||+|.
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999985
No 30
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=1.7e-16 Score=158.63 Aligned_cols=97 Identities=33% Similarity=0.607 Sum_probs=83.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~ 96 (394)
+...++.-..|||||+||||||||||+|++..+.+++|||||+.|+.|.+.+.+. ..+.++|+|
T Consensus 152 ~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i~~vDtP 215 (390)
T PRK12298 152 LKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE----------------RSFVVADIP 215 (390)
T ss_pred EEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC----------------cEEEEEeCC
Confidence 3333444457999999999999999999999888899999999999999988641 248999999
Q ss_pred cccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
|+..+++.+.+++.+|++++..+|++++|+|+.
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccC
Confidence 999888877778889999999999999999875
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.68 E-value=1.7e-17 Score=161.32 Aligned_cols=172 Identities=16% Similarity=0.246 Sum_probs=114.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..+
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 92 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLD 92 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCcCC
Confidence 456678899999999999999999999999999 7799999999998764311 2577776 344
Q ss_pred cceEEEecccccccccC-C-C---CCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+....+. . . .....+++.++.. -.-+.+++|+ ++|+++++| ||++++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD---EPt~gL 169 (306)
T PRK13537 93 PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD---EPTTGL 169 (306)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCcCC
Confidence 45666666543221110 0 0 0000111111000 0115566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|+.....+...+..+. .-...+..+ +|++.+++.+||++ .+|++|+++..++.
T Consensus 170 D~~~~~~l~~~l~~l~----~~g~till~-sH~l~e~~~~~d~i-~il~~G~i~~~g~~ 222 (306)
T PRK13537 170 DPQARHLMWERLRSLL----ARGKTILLT-THFMEEAERLCDRL-CVIEEGRKIAEGAP 222 (306)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999755444332221 111223233 39999999999999 99999999988764
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=5.4e-18 Score=155.23 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=112.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhh--------ccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL--------FKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~--------~~~~~-~ 85 (394)
......++.|+++||||||||||||+||+|||. ..|++|.|.+.|+++..+... --.|- +
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 455677899999999999999999999999999 789999999999987655421 01122 4
Q ss_pred cccceEEEecccccccccC------CC--------CCchh---hhhHHHhh--------------hhHHhhhhcc-CCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE------GQ--------GLGNS---FLSHIRAV--------------DGIFHVLRAF-EDPD 133 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~------~~--------~l~~~---~l~~l~~~--------------d~il~vv~a~-~~~~ 133 (394)
++..+++.|+.-+....+. +. ....+ .++.+... .-.+.+.+|+ .+|.
T Consensus 90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~ 169 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK 169 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC
Confidence 4556777776544321110 00 00000 01111100 0126788888 8999
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHh--h-hcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS--M-KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~--~-~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
++.|| ||..++.+-+.+.+.. .+.++.+. + ..-..|+++.+..+|||| .+|+.|++++.|+..
T Consensus 170 lLLLD---EPaAGln~~e~~~l~~-------~i~~i~~~~g~tillIEHdM~~Vm~l~dri-~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 170 LLLLD---EPAAGLNPEETEELAE-------LIRELRDRGGVTILLIEHDMKLVMGLADRI-VVLNYGEVIAEGTPE 235 (250)
T ss_pred EEEec---CccCCCCHHHHHHHHH-------HHHHHHhcCCcEEEEEEeccHHHhhhccEE-EeccCCcCcccCCHH
Confidence 99999 9999988877433322 22222221 0 001129999999999999 999999999998643
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.66 E-value=2.9e-17 Score=161.75 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=113.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
.....++..|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..+
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~ 126 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD 126 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCCccCC
Confidence 455667899999999999999999999999999 6799999999998653211 2466665 334
Q ss_pred cceEEEecccccccccCCC-----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+....+... .....+++.++..+ .-+.+++|+ .+|+++++| ||++++
T Consensus 127 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD---EPt~gL 203 (340)
T PRK13536 127 LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD---EPTTGL 203 (340)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCC
Confidence 4556666543221111000 00001111111000 115566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+.....+...+..+. .-...+..+ +|++.+++.+||++ .+|++|+++..++.+
T Consensus 204 D~~~r~~l~~~l~~l~----~~g~tilis-SH~l~e~~~~~d~i-~il~~G~i~~~g~~~ 257 (340)
T PRK13536 204 DPHARHLIWERLRSLL----ARGKTILLT-THFMEEAERLCDRL-CVLEAGRKIAEGRPH 257 (340)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcCHH
Confidence 9998755444332221 112223233 39999999999999 899999999887643
No 34
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=9.3e-17 Score=147.57 Aligned_cols=172 Identities=18% Similarity=0.235 Sum_probs=122.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~ 86 (394)
......|+.|+.+.+|||+||||||++++|.++ ++|++|.|.++|+++.... -+|.-|. ..
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 566778999999999999999999999999999 8999999999998765422 2465554 55
Q ss_pred ccceEEEecccccccccCCCC--CchhhhhHHHhh-------------------hhHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 87 PAFLEIHDIAGLVRGAHEGQG--LGNSFLSHIRAV-------------------DGIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~--l~~~~l~~l~~~-------------------d~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
++.+++.++..+.+...++.. ...+..+.+..+ .--+-|+||+ .+|.++.+| ||+
T Consensus 87 FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD---EPF 163 (309)
T COG1125 87 FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD---EPF 163 (309)
T ss_pred CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec---CCc
Confidence 666777777666654433210 000000000000 0115688888 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.+|++++.-+..++..+.+. +.+++.. .+|++++...|.||| .+|++|+++..++
T Consensus 164 gALDpI~R~~lQ~e~~~lq~~---l~kTivf-VTHDidEA~kLadri-~vm~~G~i~Q~~~ 219 (309)
T COG1125 164 GALDPITRKQLQEEIKELQKE---LGKTIVF-VTHDIDEALKLADRI-AVMDAGEIVQYDT 219 (309)
T ss_pred cccChhhHHHHHHHHHHHHHH---hCCEEEE-EecCHHHHHhhhceE-EEecCCeEEEeCC
Confidence 999999986666555444333 3333322 249999999999999 9999999987654
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=7.4e-17 Score=148.77 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=113.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCC-ccccceE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLE 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~-~~~~~i~ 91 (394)
......+..|+.++||||+|||||||||+|+|+ ..|++|.|.++|+.+..-. ..|.+|+ ...+..+
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 456678899999999999999999999999999 6799999999998762221 2466665 4556677
Q ss_pred EEecccccccccC---C--CCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 92 IHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 92 ~~D~~gl~~~~~~---~--~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
+.|+..+.-.... . ......+++.++..+. -+.++||+ .+|+++.+| ||+..+|.+.
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD---EPFgALDalT 165 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD---EPFGALDALT 165 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc---CCcchhhHHH
Confidence 7777766532211 0 0011111111111111 15677777 899999999 9999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
++....+ +.+.|.+...++-. .||+.++.-.|.||| .+|..+
T Consensus 166 R~~lq~~---l~~lw~~~~~Tvll-VTHdi~EAv~LsdRi-vvl~~~ 207 (248)
T COG1116 166 REELQDE---LLRLWEETRKTVLL-VTHDVDEAVYLADRV-VVLSNR 207 (248)
T ss_pred HHHHHHH---HHHHHHhhCCEEEE-EeCCHHHHHhhhCEE-EEecCC
Confidence 8666555 34445444443322 249999999999999 667654
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.2e-16 Score=149.00 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=114.3
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh----------hccC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKP 82 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~----------~~~~ 82 (394)
+-......|+.|+++||||.+|||||||++++.++ -+|++|.|.++|.++..+.. ...+
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIF 89 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIF 89 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhccEEe
Confidence 33567788999999999999999999999999999 57999999999987654432 1112
Q ss_pred CC-ccccceEEEecccccccccCC--CCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCC
Q 016139 83 KS-AVPAFLEIHDIAGLVRGAHEG--QGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 83 ~~-~~~~~i~~~D~~gl~~~~~~~--~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~ 141 (394)
|. ....+.++.++..+.-..... ... ....++.+...| --+.++||+ .+|++++.|
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~D--- 166 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCD--- 166 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEec---
Confidence 22 222233444444332111100 000 000111111111 115677777 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.||+-...-++..+..+.+.+ .-++-. .+|.|+.+.++|+|+ .+|++|+++-.|++.
T Consensus 167 EaTSALDP~TT~sIL~LL~~In~~l---glTIvl-ITHEm~Vvk~ic~rV-avm~~G~lvE~G~v~ 227 (339)
T COG1135 167 EATSALDPETTQSILELLKDINREL---GLTIVL-ITHEMEVVKRICDRV-AVLDQGRLVEEGTVS 227 (339)
T ss_pred CccccCChHHHHHHHHHHHHHHHHc---CCEEEE-EechHHHHHHHhhhh-eEeeCCEEEEeccHH
Confidence 9999999988765555444333322 222211 249999999999999 999999999887655
No 37
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.63 E-value=1.2e-16 Score=155.14 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=111.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------hhhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~~~~-~~~ 87 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 445678899999999999999999999999999 679999999999765321 12466665 334
Q ss_pred cceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.+...+...... . . .....+++.+...+ --+.+++|+ .+|+++++| ||++++
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gL 155 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD---EPTTGL 155 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCC
Confidence 44555554432211000 0 0 00001111111100 115566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|+.........+..+. .-...+... +|++.++..+|+++ .+|++|+++..++.
T Consensus 156 D~~~~~~l~~~l~~~~----~~g~tvi~~-sH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 156 DPRTRRAIWDYIRALK----EEGVTILLT-THYMEEADKLCDRI-AIIDHGRIIAEGTP 208 (302)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9998755444332221 111222222 39999999999999 89999999887653
No 38
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.63 E-value=3.8e-16 Score=119.66 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=48.2
Q ss_pred eeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEE
Q 016139 316 KCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 385 (394)
Q Consensus 316 raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~ 385 (394)
+||++|+|+||.|+|+.||+||.++|++|.++ | . .|++|++|+|+|||||+|.
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k-~--~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R-T--GRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e-C--CEEeCCCcEecCCCEEEEe
Confidence 69999999999999999999999999999642 3 2 4999999999999999985
No 39
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.5e-16 Score=144.46 Aligned_cols=174 Identities=22% Similarity=0.383 Sum_probs=108.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--hhhhccCCCccccceEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKPKSAVPAFLEI 92 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~~~~~~~~~~~~~i~~ 92 (394)
+.....+.+|+.+||||+||||||||+++|+|. +.|++|.|.+.|+-... +...+.|+-+...++.+
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccchHHHHHH
Confidence 556677889999999999999999999999999 78999999999864322 22344443222111111
Q ss_pred Ee-cccccccccCC--------CCCchhhhhHHHhhhhHHhhhhc-----cCCCCeEEecCCCCCcchHHHHHHHHHHhH
Q 016139 93 HD-IAGLVRGAHEG--------QGLGNSFLSHIRAVDGIFHVLRA-----FEDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (394)
Q Consensus 93 ~D-~~gl~~~~~~~--------~~l~~~~l~~l~~~d~il~vv~a-----~~~~~vl~ld~~~eP~~~ld~i~~el~~~d 158 (394)
.- ..|+....... .+++.-+...++....-|.+.-| .-+|+++++| +.+...|
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllD-------------EvlavGD 179 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD-------------EVLAVGD 179 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEe-------------hhhhcCC
Confidence 11 01111000000 01111111222333322332222 2578888888 3344667
Q ss_pred HHHHHHHHHHHHHhhhccc-----chhhHHHHHHHHHHHHHhcCCCceecCCCChhHHHHHHhh
Q 016139 159 IEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTF 217 (394)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~-----~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~ 217 (394)
..+.+|..+++...+..+. +|++..+.++|+++ .+|++|++...|+.. +.+..|
T Consensus 180 ~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~-i~l~~G~i~~~G~~~----~vi~~Y 238 (249)
T COG1134 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA-IWLEHGQIRMEGSPE----EVIPAY 238 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee-EEEeCCEEEEcCCHH----HHHHHH
Confidence 7777777777776644443 39999999999999 999999999888765 555555
No 40
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=3.1e-15 Score=146.60 Aligned_cols=97 Identities=36% Similarity=0.620 Sum_probs=83.3
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~ 96 (394)
+...+..=..|+|||.||||||||||+|++..+.+++|||||+.|+.|.+.+++ ...+.++|+|
T Consensus 150 ~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~----------------~~~~~i~D~P 213 (329)
T TIGR02729 150 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVIADIP 213 (329)
T ss_pred EEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC----------------ceEEEEEeCC
Confidence 333344446899999999999999999999888889999999999999998865 1348999999
Q ss_pred cccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
|+..+++...+++..|+++++.++++++|+|+.
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s 246 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDIS 246 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCc
Confidence 999888877788889999999999999998875
No 41
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.62 E-value=8.2e-17 Score=156.27 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=112.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~~~-~~~ 87 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+. ..+
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~ 87 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecCCCCCC
Confidence 445677899999999999999999999999999 679999999999765321 1 2566766 344
Q ss_pred cceEEEecccccccccC-C----CCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+...... . .......++.+... -.-+.+++|+ ++|+++++| ||++++
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD---EPt~gL 164 (301)
T TIGR03522 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD---EPTTGL 164 (301)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccC
Confidence 45566665432211100 0 00000111111000 0114566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+...+.....+..+ .+ ...+... +|++.+++++|+++ .+|++|+++..++.+
T Consensus 165 D~~~~~~l~~~l~~~----~~-~~tiii~-sH~l~~~~~~~d~i-~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 165 DPNQLVEIRNVIKNI----GK-DKTIILS-THIMQEVEAICDRV-IIINKGKIVADKKLD 217 (301)
T ss_pred CHHHHHHHHHHHHHh----cC-CCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 999865544433222 11 1222222 39999999999999 999999999877643
No 42
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.5e-15 Score=138.51 Aligned_cols=182 Identities=20% Similarity=0.227 Sum_probs=117.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh----------hccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~----------~~~~~~ 84 (394)
......|+.|+.++|||++||||||||++|.|+ .+|++|.|.++|.++..+.. .+..|.
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~ 89 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQ 89 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecccchhccchHHHHHHHHhceeEecc
Confidence 456677899999999999999999999999998 88999999999976543221 222222
Q ss_pred -ccccceEEEecccccccccC--CC---CCc-----hhhhhHHHhhhhH-----------------Hhhhhcc-CCCCeE
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE--GQ---GLG-----NSFLSHIRAVDGI-----------------FHVLRAF-EDPDII 135 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~--~~---~l~-----~~~l~~l~~~d~i-----------------l~vv~a~-~~~~vl 135 (394)
.+...+.++.+.-.+.-.+. .. ++. ...++.+...+.+ +.++||+ ++|+++
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKII 169 (258)
T ss_pred CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEE
Confidence 22233344443332221111 00 010 0111222221111 6688888 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCChhHHHHHH
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILN 215 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~ 215 (394)
..| ||++.||+.+.+-.+.++..+.+. ...++..+ -|..+-+.+-|+|+ .-|.+|+++++|+..+-+.+.+.
T Consensus 170 LAD---EPvasLDp~~a~~Vm~~l~~in~~---~g~Tvi~n-LH~vdlA~~Y~~Ri-igl~~G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 170 LAD---EPVASLDPESAKKVMDILKDINQE---DGITVIVN-LHQVDLAKKYADRI-IGLKAGRIVFDGPASELTDEALD 241 (258)
T ss_pred ecC---CcccccChhhHHHHHHHHHHHHHH---cCCEEEEE-echHHHHHHHHhhh-eEecCCcEEEeCChhhhhHHHHH
Confidence 999 999999999987776665433322 11122112 29999999999999 88999999999876654444433
No 43
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.62 E-value=3.2e-16 Score=152.95 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=123.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----hccCCC-ccc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVP 87 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~~~~-~~~ 87 (394)
-......|.+|+.++|+||+||||||||++|+|. ..|++|.|.++|+++..+.. .+..|. .++
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-----------e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-----------EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhhcccceeecCcccC
Confidence 3557788999999999999999999999999999 67999999999998876553 455566 567
Q ss_pred cceEEEecccccccccCC---CC---CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 88 AFLEIHDIAGLVRGAHEG---QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~---~~---l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+++++.|+.+++-..... .. ...++++.++..+. -+.++||+ .+|.++.+| ||++.
T Consensus 90 PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD---EPlSa 166 (352)
T COG3842 90 PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD---EPLSA 166 (352)
T ss_pred CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc---Ccccc
Confidence 789999998876441110 00 11111211111111 15678888 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||.--++.....+..+.+. ..... ...||+.++...+.||| .+|++|++...++..
T Consensus 167 LD~kLR~~mr~Elk~lq~~---~giT~-i~VTHDqeEAl~msDrI-~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 167 LDAKLREQMRKELKELQRE---LGITF-VYVTHDQEEALAMSDRI-AVMNDGRIEQVGTPE 222 (352)
T ss_pred hhHHHHHHHHHHHHHHHHh---cCCeE-EEEECCHHHHhhhccce-EEccCCceeecCCHH
Confidence 9887765544443333222 11111 22359999999999999 999999998877643
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=6.4e-16 Score=139.17 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=113.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------hhh--hccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~~--~~~~~~-~ 85 (394)
+.....+.+|++++||||+|||||||+++|.++ -.|++|.|.++|..+.. +.. .+..|. .
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-----------E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-----------EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-----------cCCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 456678899999999999999999999999999 56999999999965421 111 344444 5
Q ss_pred cccceEEEecccccccccCC------CCCchhhhhHHHhhhhH--------------Hhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 VPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~------~~l~~~~l~~l~~~d~i--------------l~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.++.+++.++.-+..-..++ +......++.++.+|-. +.++||+ -+|+++..| ||+
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD---EPT 164 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD---EPT 164 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec---CCc
Confidence 66678888876554322111 11222233333333322 6788888 799999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcc-----cchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRS-----NDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~-----~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
+.||+.--... ++.+......+ .||.+....+++||+ .++++|+++..+
T Consensus 165 SALDPElv~EV----------L~vm~~LA~eGmTMivVTHEM~FAr~Vadrv-iFmd~G~iie~g 218 (240)
T COG1126 165 SALDPELVGEV----------LDVMKDLAEEGMTMIIVTHEMGFAREVADRV-IFMDQGKIIEEG 218 (240)
T ss_pred ccCCHHHHHHH----------HHHHHHHHHcCCeEEEEechhHHHHHhhheE-EEeeCCEEEEec
Confidence 99999763222 22222222222 249999999999999 999999888766
No 45
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.1e-15 Score=134.23 Aligned_cols=164 Identities=15% Similarity=0.278 Sum_probs=113.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cccc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AVPA 88 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~~~ 88 (394)
....+..|+..+|+||||||||||++.|+|. ..|++|.+.++|.+++.+. ....||. .+.+
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred cceeccCCcEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 4456788999999999999999999999999 7899999999998876543 2577877 4556
Q ss_pred ceEEEecccccccccCCCCC--chh--hhhHHHhhhhH-----------------Hhhhhcc-------CCCCeEEecCC
Q 016139 89 FLEIHDIAGLVRGAHEGQGL--GNS--FLSHIRAVDGI-----------------FHVLRAF-------EDPDIIHVDDS 140 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l--~~~--~l~~l~~~d~i-----------------l~vv~a~-------~~~~vl~ld~~ 140 (394)
.+++.|+..++.-++..... .+. ..+.+..+|+. +++.|++ .++..++||
T Consensus 89 pFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD-- 166 (259)
T COG4559 89 PFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD-- 166 (259)
T ss_pred ceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec--
Confidence 68888888777555431100 000 11112222221 4444442 334588999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccc-----hhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~-----h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.+|+-.+...+.....+ ...+.. |+++..-..|||| .+|.+|+++..|+
T Consensus 167 -EPtsaLDi~HQ~~tl~laR~l----------a~~g~~V~~VLHDLNLAA~YaDri-vll~~Grv~a~g~ 224 (259)
T COG4559 167 -EPTSALDIAHQHHTLRLARQL----------AREGGAVLAVLHDLNLAAQYADRI-VLLHQGRVIASGS 224 (259)
T ss_pred -CCccccchHHHHHHHHHHHHH----------HhcCCcEEEEEccchHHHHhhhee-eeeeCCeEeecCC
Confidence 999999998864443322222 112221 9999999999999 9999999998865
No 46
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=1.6e-15 Score=132.54 Aligned_cols=59 Identities=41% Similarity=0.590 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
+|+++|.||+|||||||+|||.+..++|||++|.++..|.+.+.+ ..+.++|+||++.-
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccC
Confidence 689999999999999999999998889999999999999999876 35899999998653
No 47
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.6e-15 Score=142.98 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=116.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc---chhhhhh-----hccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---RFEWLCQ-----LFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~---~~~~l~~-----~~~~~~-~ 85 (394)
......|+.|+.++|+||||||||||+++|+|+ ..|+.|.|.++|+ +...+.. +|..|. .
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-----------e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-----------ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-----------CCCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 357778999999999999999999999999999 6799999999998 4433221 455554 4
Q ss_pred cccceEEEecccccccccCC----CCCchhh---hhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG----QGLGNSF---LSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~----~~l~~~~---l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP 143 (394)
....+++.|+..++-..... .....+. ++.++..++ -+.++||+ -.|+++.|| ||
T Consensus 88 LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD---EP 164 (345)
T COG1118 88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EP 164 (345)
T ss_pred hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec---CC
Confidence 55678888888776422210 0111111 111111111 15677888 789999999 99
Q ss_pred cchHHHHHH-HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 144 VRDLEVISA-ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 144 ~~~ld~i~~-el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+..+|.--. ++..| +.+..+++.-.. .-.+|+.+++.+++||+ ..|++|++...++.+
T Consensus 165 f~ALDa~vr~~lr~w----Lr~~~~~~~~tt-vfVTHD~eea~~ladrv-vvl~~G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRW----LRKLHDRLGVTT-VFVTHDQEEALELADRV-VVLNQGRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHH----HHHHHHhhCceE-EEEeCCHHHHHhhcceE-EEecCCeeeeeCCHH
Confidence 999998654 33222 222222222111 11249999999999999 999999987776543
No 48
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.59 E-value=6.4e-16 Score=150.05 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=120.8
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----hccCCC-ccc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVP 87 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~~~~-~~~ 87 (394)
-+.....+..|+.++|+||+|||||||+|+|+|+ .+|++|.|.++|.++..+.. .+.+|. ..+
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALy 87 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALY 87 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCcccc
Confidence 3456778999999999999999999999999999 67999999999998876542 345555 667
Q ss_pred cceEEEecccccccccCC--CCCch---hhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHEG--QGLGN---SFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~--~~l~~---~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
+++++.|+.++.-...+. ..... ...+.++..+. -+.+.||+ .+|+++.+| ||++.|
T Consensus 88 PhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D---EPlSnL 164 (338)
T COG3839 88 PHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD---EPLSNL 164 (338)
T ss_pred CCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec---CchhHh
Confidence 888999988876332210 00000 11111111111 15677777 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|.-.+......+..+.+ ++..+. .-.||+..+...+.||+ .+|++|++...|+.
T Consensus 165 Da~lR~~mr~ei~~lh~---~l~~T~-IYVTHDq~EAmtladri-~Vm~~G~i~Q~g~p 218 (338)
T COG3839 165 DAKLRVLMRSEIKKLHE---RLGTTT-IYVTHDQVEAMTLADRI-VVMNDGRIQQVGTP 218 (338)
T ss_pred hHHHHHHHHHHHHHHHH---hcCCcE-EEEcCCHHHHHhhCCEE-EEEeCCeeeecCCh
Confidence 98776554444333222 222222 22249999999999999 99999998877654
No 49
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.59 E-value=1e-15 Score=153.56 Aligned_cols=172 Identities=16% Similarity=0.265 Sum_probs=113.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~ 86 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSL 88 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCC
Confidence 445677899999999999999999999999999 6799999999997654321 1466665 33
Q ss_pred ccceEEEecccccccccCC--CCCc-------hhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAHEG--QGLG-------NSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~--~~l~-------~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
+..+++.|+..+....+.+ ..+. ...++.+...+ .-+.+++++ ++|++++|| |
T Consensus 89 ~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD---E 165 (402)
T PRK09536 89 SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD---E 165 (402)
T ss_pred CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---C
Confidence 4456666655443221100 0000 01111111111 115677777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|+.....++..+..+. +....+... +|+++.+.++|+++ .+|++|+++..++.
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~----~~g~TIIiv-sHdl~~~~~~adri-i~l~~G~iv~~G~~ 223 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLV----DDGKTAVAA-IHDLDLAARYCDEL-VLLADGRVRAAGPP 223 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHH----hcCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 999999998755544333221 111222222 39999999999999 89999999887653
No 50
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.59 E-value=1.9e-16 Score=155.92 Aligned_cols=174 Identities=15% Similarity=0.219 Sum_probs=114.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----------hhccCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPK 83 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~~~ 83 (394)
-......+++|+++||+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+|
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-----------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q 89 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEEC
Confidence 3556678899999999999999999999999999 6799999999998764321 135555
Q ss_pred C-ccccceEEEecccccccccC-C-CCC---chhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ......++.|+..+...... . ... ...+++.+...+. -+.+++|+ .+|+++++| |
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD---E 166 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---E 166 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---C
Confidence 5 33334555555433211100 0 000 0011111111111 15677887 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|+.....++..+..+.+ +....+.. .+|+++.+.++||++ .+|++|+++..++.
T Consensus 167 Pts~LD~~t~~~i~~lL~~l~~---~~g~tiil-iTH~~~~v~~~~d~v-~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 167 ATSALDPATTQSILELLKEINR---RLGLTILL-ITHEMDVVKRICDCV-AVISNGELIEQGTV 225 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999997665554433322 11222212 249999999999999 89999999877653
No 51
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.59 E-value=6.6e-16 Score=150.05 Aligned_cols=172 Identities=17% Similarity=0.258 Sum_probs=110.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------hhhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~~~~-~~~ 87 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~ 89 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLD 89 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEeccccCC
Confidence 456678999999999999999999999999999 679999999998765211 12466665 233
Q ss_pred cceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+...... . . .....+++.++..+ .-+.+++++ .+|+++++| ||++++
T Consensus 90 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gL 166 (303)
T TIGR01288 90 PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD---EPTTGL 166 (303)
T ss_pred cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCC
Confidence 34555554432111000 0 0 00001111111101 115567776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|+.....+...+..+. .-...+... +|++..+..+|+++ .+|++|+++..++.
T Consensus 167 D~~~~~~l~~~l~~~~----~~g~til~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 167 DPHARHLIWERLRSLL----ARGKTILLT-THFMEEAERLCDRL-CVLESGRKIAEGRP 219 (303)
T ss_pred CHHHHHHHHHHHHHHH----hCCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9998755444332221 111122222 39999999999999 88999998877653
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=2e-15 Score=137.36 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=115.8
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh--------hccCCC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS 84 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--------~~~~~~ 84 (394)
.-+.....++.|++++|+|+||||||||+++|+|. .++.+|.|.+.|+++..+.. .|.|+.
T Consensus 18 ~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPeg 86 (237)
T COG0410 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVPEG 86 (237)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCccc
Confidence 34566778899999999999999999999999999 67889999999998865432 688986
Q ss_pred -ccccceEEEecccccccccCC----CCCchh----h--hhHHH---------hhhhHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEG----QGLGNS----F--LSHIR---------AVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~----~~l~~~----~--l~~l~---------~~d~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.++..+++.++.-+....... ...... | +...+ .-.-.+.+.||+ .+|++++|| ||
T Consensus 87 R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD---EP 163 (237)
T COG0410 87 RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD---EP 163 (237)
T ss_pred ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec---CC
Confidence 677788888876554222111 000000 1 11110 011236788888 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+.++.+.--+.+...+..+.+.. ...+.. .-.+.....++.||. .+|+.|+++..|+.
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~---g~tIlL-VEQn~~~Al~iaDr~-yvle~Griv~~G~~ 221 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEG---GMTILL-VEQNARFALEIADRG-YVLENGRIVLSGTA 221 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcC---CcEEEE-EeccHHHHHHhhCEE-EEEeCCEEEEecCH
Confidence 99999876322222211111100 000000 015666777888998 88999999988753
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=3.7e-16 Score=143.90 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=105.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 85 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFP 85 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcCcCchhhccEEEEcCchhhcc
Confidence 456678899999999999999999999999999 6799999999987653211 1355555 2233
Q ss_pred ceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
..++.|...+...... . . .....+++.+...+ --+.+++++ .+|+++++| ||++++|
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD---EPt~~LD 162 (213)
T cd03259 86 HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD---EPLSALD 162 (213)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 3444444332211000 0 0 00001111111000 115567777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+.....+...+..+.+ +....+.. .+|+...+..+|+++ ..|++|+++.
T Consensus 163 ~~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~~~~d~v-~~l~~G~i~~ 211 (213)
T cd03259 163 AKLREELREELKELQR---ELGITTIY-VTHDQEEALALADRI-AVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHHHHHHH---HcCCEEEE-EecCHHHHHHhcCEE-EEEECCEEEe
Confidence 9886554443322211 11112212 239999999999999 7888887654
No 54
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=8.9e-16 Score=143.59 Aligned_cols=172 Identities=21% Similarity=0.235 Sum_probs=109.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 85 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccChhhHHHHhcceEEEccC
Confidence 445677899999999999999999999999999 679999999998765321 1 1356665
Q ss_pred -ccccceEEEecccccccccCCC---C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQ---G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~---~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....+++.|...+........ . .....++.+...+ --+.+++++ .+|+++++| |
T Consensus 86 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD---E 162 (235)
T cd03261 86 GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD---E 162 (235)
T ss_pred cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec---C
Confidence 2333345555443321100000 0 0000111111000 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+.+ .....+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~-vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 220 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKK---ELGLTSIM-VTHDLDTAFAIADRI-AVLYDGKIVAEGT 220 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCcEEEE-EecCHHHHHHhcCEE-EEEECCeEEEecC
Confidence 9999999987655444332211 11112212 239999999999999 8889999876654
No 55
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=6.5e-16 Score=153.10 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=115.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+.
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 356678899999999999999999999999999 6799999999998764322 2456665 3444
Q ss_pred ceEEEecccccccccC-C-CCC---chhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+...... . ... ....++.++..+. -+.+++|+ .+|+++++| ||++.+|
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD---EP~s~LD 166 (356)
T PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD---EPLSNLD 166 (356)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 5666666544321110 0 000 0111111111111 15677887 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
....+.+...+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++.
T Consensus 167 ~~~r~~l~~~l~~l~~---~~g~ti-i~vTHd~~ea~~l~D~i-~vl~~G~i~~~g~~ 219 (356)
T PRK11650 167 AKLRVQMRLEIQRLHR---RLKTTS-LYVTHDQVEAMTLADRV-VVMNGGVAEQIGTP 219 (356)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEeCCEEEEECCH
Confidence 9987655554432221 111122 22249999999999999 99999999877653
No 56
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.6e-16 Score=144.10 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=106.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCCc-cccceE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPAFLE 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~~-~~~~i~ 91 (394)
......+++|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||.. .+...+
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~t 89 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLT 89 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccccCCC
Confidence 455678899999999999999999999999999 6799999999987653222 13455542 222234
Q ss_pred EEecccccccccC---C--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 92 IHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 92 ~~D~~gl~~~~~~---~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
+.|...+...... . ......+++.+...+ .-+.+++++ .+|+++++| ||++++|+..
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~~~ 166 (220)
T cd03293 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD---EPFSALDALT 166 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCHHH
Confidence 4443322110000 0 000001111111100 115567777 799999999 9999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc--CCCceecCCC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRLGDW 206 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~--~g~~~~~~~~ 206 (394)
...+...+..+. ......+.. .+|+...+..+|+++ .+|+ +|+++..+++
T Consensus 167 ~~~~~~~l~~~~---~~~~~tiii-~sH~~~~~~~~~d~i-~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 167 REQLQEELLDIW---RETGKTVLL-VTHDIDEAVFLADRV-VVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHH---HHcCCEEEE-EecCHHHHHHhCCEE-EEEECCCCEEEEEEEe
Confidence 765544432221 111112212 239999999999999 7788 6888765443
No 57
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.56 E-value=1.7e-15 Score=138.78 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=102.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--h--hhccCCCc--ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--C--QLFKPKSA--VPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--~--~~~~~~~~--~~~ 88 (394)
......+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.. ...
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 85 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-----------IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEhhhHHhhcceEEEecChhhhhh
Confidence 445667899999999999999999999999999 679999999999765321 1 13555552 112
Q ss_pred ceEEEecccccccccCCC-CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 89 FLEIHDIAGLVRGAHEGQ-GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~-~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
..++.|...+........ .....+++.++..+ .-+.+++++ .+|+++++| ||++++|+...
T Consensus 86 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~ 162 (205)
T cd03226 86 TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD---EPTSGLDYKNM 162 (205)
T ss_pred hccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHH
Confidence 234444433221100000 00011111111110 115566776 799999999 99999999987
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCc
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
+.....+..+.+ -...+.. .+|+...+..+|+++ .+|++|++
T Consensus 163 ~~l~~~l~~~~~----~~~tii~-~sH~~~~~~~~~d~i-~~l~~G~i 204 (205)
T cd03226 163 ERVGELIRELAA----QGKAVIV-ITHDYEFLAKVCDRV-LLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHH----CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEE
Confidence 555443322211 1112212 249999999999998 77787764
No 58
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=6.3e-15 Score=144.67 Aligned_cols=99 Identities=36% Similarity=0.599 Sum_probs=85.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
+.+...+.-=..|||||.||||||||||+|++..+.+++|||||+.|+.|.+.+.+ ...+.++|
T Consensus 149 ~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~----------------~~~~~i~D 212 (335)
T PRK12299 149 RWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD----------------YKSFVIAD 212 (335)
T ss_pred EEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC----------------CcEEEEEe
Confidence 44444455556899999999999999999999888889999999999999998853 13489999
Q ss_pred cccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+||+..+++.+.+++.+|+++++.++++++|+|+.
T Consensus 213 ~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s 247 (335)
T PRK12299 213 IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIE 247 (335)
T ss_pred CCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCC
Confidence 99999988888888899999999999999999885
No 59
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=9.2e-16 Score=142.07 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=107.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------hhhccCCCc-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKSA-VP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~~~~~-~~ 87 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. ..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 456678899999999999999999999999998 679999999998754321 113555552 22
Q ss_pred cceEEEecccccccccC---C--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~---~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+...... . ......+++.++..+ .-+.+++|+ .+|+++++| ||++++
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD---EPt~~L 162 (220)
T cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD---EPTIGL 162 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCC
Confidence 23344443322110000 0 000011111111111 014566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|....+.....+..+.+ +....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 163 D~~~~~~l~~~l~~~~~---~~~~tvi~-~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (220)
T cd03265 163 DPQTRAHVWEYIEKLKE---EFGMTILL-TTHYMEEAEQLCDRV-AIIDHGRIIAEGT 215 (220)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99987655444332211 11112212 249999999999999 8889999876654
No 60
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.56 E-value=6e-16 Score=153.18 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=114.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~ 89 (394)
.....+..|++++|+||||||||||+++|+|. ..|++|.|.++|+++.... ..|.+|. ..+..
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 45677889999999999999999999999999 6799999999998764321 1456665 34445
Q ss_pred eEEEecccccccccC---C--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 90 LEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 90 i~~~D~~gl~~~~~~---~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
+++.++..+...... . ......+++.++..+ --+.+++|+ .+|+++++| ||++.+|.
T Consensus 91 ~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD---EP~s~LD~ 167 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD---EPLSALDA 167 (353)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 677776654321110 0 000011111111111 115677777 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
...+.....+..+.+ .....+.. .+|+..++..+||++ .+|++|+++..++.
T Consensus 168 ~~r~~l~~~L~~l~~---~~~~tvi~-vTHd~~ea~~l~d~i-~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 168 RVREHLRTEIRQLQR---RLGVTTIM-VTHDQEEALSMADRI-VVMNHGVIEQVGTP 219 (353)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEE-EcCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 887555444332211 11112212 249999999999999 99999999877653
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.56 E-value=4e-15 Score=137.78 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=107.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~- 85 (394)
......+.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-----------LPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc
Confidence 455667899999999999999999999999999 679999999998765321 1 23556552
Q ss_pred cccceEEEecccccccccCCCC---CchhhhhHHH-hhh--------------hHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQG---LGNSFLSHIR-AVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~---l~~~~l~~l~-~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
....+++.|...+......... ....+++.+. ..+ .-+.+++++ .+|+++++| ||+++
T Consensus 86 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~ 162 (222)
T cd03224 86 IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD---EPSEG 162 (222)
T ss_pred cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccc
Confidence 3333444444332211110000 0011112221 001 115567777 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|....+.....+..+ ..-...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 163 LD~~~~~~l~~~l~~~----~~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (222)
T cd03224 163 LAPKIVEEIFEAIREL----RDEGVTILL-VEQNARFALEIADRA-YVLERGRVVLEGT 215 (222)
T ss_pred CCHHHHHHHHHHHHHH----HHCCCEEEE-EeCCHHHHHHhccEE-EEeeCCeEEEeCC
Confidence 9999875554433222 111112212 239999999999999 8889998876553
No 62
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.56 E-value=1.5e-15 Score=140.09 Aligned_cols=165 Identities=12% Similarity=0.133 Sum_probs=102.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 88 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQD 88 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEehhhcChhHHHHHHHhceEEecC
Confidence 456677899999999999999999999999999 679999999999866321 1 1355555
Q ss_pred -ccccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
......++.|...+...... . ......+++.+...+ .-+.+++++ .+|+++++| ||
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP 165 (216)
T TIGR00960 89 HRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD---EP 165 (216)
T ss_pred ccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 22333444444332110000 0 000001111111100 115677777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
++++|+...+.....+..+. +-...+.. .+|+...+..+|+++ .+|++|+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~----~~~~tii~-vsH~~~~~~~~~d~i-~~l~~G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFN----RRGTTVLV-ATHDINLVETYRHRT-LTLSRGR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHH----HCCCEEEE-EeCCHHHHHHhCCEE-EEEeCCc
Confidence 99999998755444332221 11112212 249999999999998 7777775
No 63
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.56 E-value=1.6e-15 Score=143.93 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh--hccCCC-ccccceE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVPAFLE 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--~~~~~~-~~~~~i~ 91 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..... .|.+|. ..+...+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~t 97 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-----------ETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKK 97 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCc
Confidence 456678899999999999999999999999999 67999999998866533221 355554 2222234
Q ss_pred EEecccccccccCCCCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 92 ~~D~~gl~~~~~~~~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
+.|...+.... ........+++.+... -..+.+++++ .+|+++++| ||++++|......+.
T Consensus 98 v~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l~ 173 (257)
T PRK11247 98 VIDNVGLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD---EPLGALDALTRIEMQ 173 (257)
T ss_pred HHHHHHhcccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHHH
Confidence 44443321100 0000000111111100 0115566776 799999999 999999999875554
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..+..+. ......+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 174 ~~L~~~~---~~~~~tvii-vsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (257)
T PRK11247 174 DLIESLW---QQHGFTVLL-VTHDVSEAVAMADRV-LLIEEGKIGLDLT 217 (257)
T ss_pred HHHHHHH---HHcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEeecc
Confidence 4432221 111112212 239999999999999 8889998876554
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.3e-15 Score=142.84 Aligned_cols=172 Identities=20% Similarity=0.245 Sum_probs=108.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 86 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-----------VEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEeccccCHhHHHHHHhccEEEccc
Confidence 455678899999999999999999999999999 678999999998765321 1 2466665
Q ss_pred -ccccceEEEeccccccccc--------C--CCC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeE
Q 016139 85 -AVPAFLEIHDIAGLVRGAH--------E--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~--------~--~~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl 135 (394)
..+...++.|...+..... . ... ....++..+...+ --+.+++++ .+|+++
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 87 FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2333344444433211000 0 000 0001111111110 015566776 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++++|+...+.+...+..+.+ +....+.. .+|+...+..+||++ .+|.+|+++..++
T Consensus 167 llD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (241)
T cd03256 167 LAD---EPVASLDPASSRQVMDLLKRINR---EEGITVIV-SLHQVDLAREYADRI-VGLKDGRIVFDGP 228 (241)
T ss_pred EEe---CccccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 999 99999999987555443322211 11112212 249999999999999 8889999876654
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.56 E-value=2.9e-15 Score=137.50 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=106.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----hhhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~~~~-~~~~ 88 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+.
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYP 85 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCCcccchHHHHhhEEEecCCCccCc
Confidence 445667899999999999999999999999999 679999999999765321 12355665 3343
Q ss_pred ceEEEecccccccccC-CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 89 FLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
..++.|...+...... ........++.++..+ -.+.+++++ .+|+++++| ||++++|....
T Consensus 86 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~~ 162 (208)
T cd03268 86 NLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD---EPTNGLDPDGI 162 (208)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCHHHH
Confidence 4555554433211110 0000011111111100 115567777 799999999 99999999986
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+.....+..+. +....+ .-.+|+...+..+|+++ .+|++|+++.
T Consensus 163 ~~l~~~l~~~~----~~~~ti-i~~tH~~~~~~~~~d~v-~~l~~g~i~~ 206 (208)
T cd03268 163 KELRELILSLR----DQGITV-LISSHLLSEIQKVADRI-GIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHH----HCCCEE-EEEcCCHHHHHHhcCEE-EEEECCEEEe
Confidence 55444332211 111122 12249999999999999 8888887654
No 66
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.6e-15 Score=142.21 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=107.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
.....++.+|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..+.
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 87 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----------ERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFR 87 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCccccceEEEecCCcccC
Confidence 455678899999999999999999999999999 6799999999987653211 1355554 2222
Q ss_pred ceEEEecccccccccC-----C-CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 89 FLEIHDIAGLVRGAHE-----G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-----~-~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
..++.|...+...... . .. .....++.++..+ --+.+++|+ .+|+++++| ||+
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EP~ 164 (239)
T cd03296 88 HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---EPF 164 (239)
T ss_pred CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCc
Confidence 3444443332110000 0 00 0001111111000 015567777 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++|+...+.+...+..+.+ .....+... +|+...+..+|+++ .+|++|++...++
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~---~~~~tvii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (239)
T cd03296 165 GALDAKVRKELRRWLRRLHD---ELHVTTVFV-THDQEEALEVADRV-VVMNKGRIEQVGT 220 (239)
T ss_pred ccCCHHHHHHHHHHHHHHHH---HcCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 99999987655443322211 111122122 39999999999999 8889999876654
No 67
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.55 E-value=1e-15 Score=141.65 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=108.1
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccCCC-cc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~~~-~~ 86 (394)
-+.....+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. ..
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-----------LRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccchHHHhhhEEEecCcCCc
Confidence 3556678899999999999999999999999999 679999999998765321 1 1355554 22
Q ss_pred ccceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 87 PAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+...++.|...+...... . . .....+++.++..+ --+.+++++ .+|+++++| ||+++
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~~ 163 (220)
T cd03263 87 FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD---EPTSG 163 (220)
T ss_pred cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCCCC
Confidence 223444444332110000 0 0 00011111111111 115567776 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|+...+.....+..+.+ ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 164 LD~~~~~~l~~~l~~~~~-----~~tii~-~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 215 (220)
T cd03263 164 LDPASRRAIWDLILEVRK-----GRSIIL-TTHSMDEAEALCDRI-AIMSDGKLRCIGS 215 (220)
T ss_pred CCHHHHHHHHHHHHHHhc-----CCEEEE-EcCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 999987655444332211 112212 239999999999999 8889999876654
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=5.2e-15 Score=129.85 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=119.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccC-----CC-ccc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP-----KS-AVP 87 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~-----~~-~~~ 87 (394)
...+...+..|++++|+||+|||||||+|.|+|. ..|.+|.|.++|++.......-.| |+ ..+
T Consensus 15 ~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF-----------~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLF 83 (231)
T COG3840 15 PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-----------ETPASGEILINGVDHTASPPAERPVSMLFQENNLF 83 (231)
T ss_pred eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhc-----------cCCCCceEEEcCeecCcCCcccCChhhhhhccccc
Confidence 3456678899999999999999999999999999 679999999999876544332222 33 566
Q ss_pred cceEEEecccccccccCCCCCch-----hhhhHHHhhhhH--------------Hhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGN-----SFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~-----~~l~~l~~~d~i--------------l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
+.+++..+.|++..+.....-.+ .....+...+.. +.++||+ .+-.|+.+| ||++.+
T Consensus 84 aHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD---EPFsAL 160 (231)
T COG3840 84 AHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD---EPFSAL 160 (231)
T ss_pred hhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec---Cchhhc
Confidence 77888888888755432211000 111111111111 5678888 666788999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+--+...+..+..+ ...-..++ ...+|..+++..+.+++ .++++|++.+.+..+
T Consensus 161 dP~LR~eMl~Lv~~l---~~E~~~Tl-lmVTH~~~Da~~ia~~~-~fl~~Gri~~~g~~~ 215 (231)
T COG3840 161 DPALRAEMLALVSQL---CDERKMTL-LMVTHHPEDAARIADRV-VFLDNGRIAAQGSTQ 215 (231)
T ss_pred CHHHHHHHHHHHHHH---HHhhCCEE-EEEeCCHHHHHHhhhce-EEEeCCEEEeeccHH
Confidence 997764444433222 11111222 22349999999999999 999999998877644
No 69
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.55 E-value=2.9e-15 Score=139.57 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=109.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------hhhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~~~~~- 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-----------LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE 85 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc
Confidence 456677899999999999999999999999999 679999999998764321 124566652
Q ss_pred cccceEEEecccccccccC-C-CCCchhhhhHHHh-hh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 86 VPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRA-VD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~-~~l~~~~l~~l~~-~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
.+..+++.|...+...... . ......++..+.. .+ .-+.+++++ .+|+++++| ||++++
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD---EPt~~L 162 (230)
T TIGR03410 86 IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD---EPTEGI 162 (230)
T ss_pred ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcccC
Confidence 3333444444332211110 0 0011111221110 00 115566776 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|+...+.....+..+.+ .....+... +|+...+..+|+++ .+|.+|+++..++.
T Consensus 163 D~~~~~~l~~~l~~~~~---~~~~tii~~-sH~~~~~~~~~d~v-~~l~~g~i~~~~~~ 216 (230)
T TIGR03410 163 QPSIIKDIGRVIRRLRA---EGGMAILLV-EQYLDFARELADRY-YVMERGRVVASGAG 216 (230)
T ss_pred CHHHHHHHHHHHHHHHH---cCCcEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99987554443322111 111122122 39999999999999 88899998876543
No 70
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.55 E-value=1.1e-15 Score=142.57 Aligned_cols=170 Identities=15% Similarity=0.233 Sum_probs=106.2
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCCc-cccceEEE
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPAFLEIH 93 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~~-~~~~i~~~ 93 (394)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. .+..+++.
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGL-----------AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVR 72 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhheEEecCcccCCCCCHH
Confidence 4567889999999999999999999999999 6799999999987653221 24555552 23334444
Q ss_pred ecccccccc-cCCC---C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 94 DIAGLVRGA-HEGQ---G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 94 D~~gl~~~~-~~~~---~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
|...+.... .... . ....+++.+...+ .-+.+++++ .+|+++++| ||++++|+..
T Consensus 73 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~~~ 149 (230)
T TIGR01184 73 ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD---EPFGALDALT 149 (230)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCHHH
Confidence 543321100 0000 0 0011111111111 115566776 899999999 9999999998
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
...+...+..+.+ +....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 150 ~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 198 (230)
T TIGR01184 150 RGNLQEELMQIWE---EHRVTVLM-VTHDVDEALLLSDRV-VMLTNGPAANIGQ 198 (230)
T ss_pred HHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhcCEE-EEEeCCcEecccC
Confidence 7554443322211 11112212 249999999999999 8889998876553
No 71
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.55 E-value=3.4e-15 Score=140.26 Aligned_cols=173 Identities=18% Similarity=0.225 Sum_probs=109.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 87 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-----------VEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCC
Confidence 456678899999999999999999999999999 679999999999765321 1 1456665
Q ss_pred -ccccceEEEeccccccccc--------C--CCC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeE
Q 016139 85 -AVPAFLEIHDIAGLVRGAH--------E--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~--------~--~~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl 135 (394)
.....+++.|...+..... . ... ....+++.+.... --+.+++++ .+|+++
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 88 YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2333345444432211000 0 000 0001111111100 015567777 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++| ||++++|....+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++.
T Consensus 168 llD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 168 LAD---EPIASLDPKTSKQVMDYLKRINK---EDGITVII-NLHQVDLAKKYADRI-VGLKAGEIVFDGAP 230 (243)
T ss_pred EEe---CCcccCCHHHHHHHHHHHHHHHH---HcCCEEEE-EeCCHHHHHHhcCeE-EEEECCEEEecCCH
Confidence 999 99999999887555443322211 11112212 249999999999999 88899998866543
No 72
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.55 E-value=1.5e-15 Score=150.48 Aligned_cols=172 Identities=18% Similarity=0.206 Sum_probs=113.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 556778999999999999999999999999999 779999999999876421 1245555
Q ss_pred C-ccccceEEEecccccccccCCC-----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. .++..+++.++..+........ .....+++.+...+ --+.+++|+ .+|+++++| |
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD---E 155 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD---E 155 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 5 3344456656554432111000 00001111111100 115677887 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++.+|+...+.+...+..+.+ ...+.+.. .+|++.++..+|+++ .+|.+|+++..++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~---~~~~Tii~-vTHd~~ea~~~~drI-~vl~~G~iv~~g~ 213 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQA---TLQKTIVF-ITHDLDEAIRIGDRI-VIMKAGEIVQVGT 213 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEeCCEEEeeCC
Confidence 9999999987555444332211 11222222 249999999999999 8999999887764
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.6e-15 Score=149.82 Aligned_cols=172 Identities=17% Similarity=0.255 Sum_probs=110.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~ 90 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-----------ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH 90 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCC
Confidence 456678899999999999999999999999999 679999999999765321 1 1355555
Q ss_pred -ccccceEEEecccccccccC--CC---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~--~~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
..+..+++.|+..+...... .. .....+++.+...+ .-+.+++++ .+|+++++| ||
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD---EP 167 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD---EA 167 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 23333555554433211000 00 00001111111000 115567776 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++|+.....+...+..+.+ .....+.. .+|++..+..+|+++ .+|++|+++..++
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~---~~g~tiil-vtH~~~~i~~~~d~v-~~l~~G~i~~~g~ 224 (343)
T PRK11153 168 TSALDPATTRSILELLKDINR---ELGLTIVL-ITHEMDVVKRICDRV-AVIDAGRLVEQGT 224 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999987655444332211 11112212 249999999999999 8899999887664
No 74
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2e-15 Score=138.84 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=104.7
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~ 89 (394)
.....+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 84 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-----------ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAH 84 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCcCCHhHccEEEEecccccCCC
Confidence 66788999999999999999999999999999 6799999999987653211 1355554 22223
Q ss_pred eEEEecccccccccCC--CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 90 LEIHDIAGLVRGAHEG--QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~--~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
.++.|...+....... .. .....++.+...+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 85 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD---EP~~~LD~ 161 (211)
T cd03298 85 LTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD---EPFAALDP 161 (211)
T ss_pred CcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCCH
Confidence 3444443221110000 00 0001111111000 115567777 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
...+.....+..+.+ .....+.. .+|+...+..+||++ .+|++|+++.
T Consensus 162 ~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~~~~d~i-~~l~~G~i~~ 209 (211)
T cd03298 162 ALRAEMLDLVLDLHA---ETKMTVLM-VTHQPEDAKRLAQRV-VFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHHhhhCEE-EEEECCEEee
Confidence 987655444322211 11112212 249999999999999 8888887653
No 75
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.6e-16 Score=152.28 Aligned_cols=172 Identities=14% Similarity=0.177 Sum_probs=113.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+.
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 346678899999999999999999999999999 6799999999998764322 1355555 3444
Q ss_pred ceEEEecccccccccC-C-CCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+...... . ... ....++.++..+ --+.+++|+ .+|+++++| ||++.+|
T Consensus 92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD---EP~s~LD 168 (351)
T PRK11432 92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD---EPLSNLD 168 (351)
T ss_pred CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCC
Confidence 5666666554321100 0 000 001111111100 115677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+.+ .....+.. .+|+..++..+||++ .+|++|++...++
T Consensus 169 ~~~r~~l~~~l~~l~~---~~g~tii~-vTHd~~e~~~laD~i-~vm~~G~i~~~g~ 220 (351)
T PRK11432 169 ANLRRSMREKIRELQQ---QFNITSLY-VTHDQSEAFAVSDTV-IVMNKGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEE-EcCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9987655444332221 11122212 249999999999999 9999999987765
No 76
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.55 E-value=1.5e-15 Score=139.75 Aligned_cols=170 Identities=13% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ....
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-----------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYP 85 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCcccceEEEEecChhhcc
Confidence 455677899999999999999999999999999 6799999999987653221 1344544 2222
Q ss_pred ceEEEecccccccccC-C-CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
..++.|...+...... . .. ....+++.+...+ .-+.+++++ .+|+++++| ||++++|
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EPt~~LD 162 (213)
T cd03301 86 HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD---EPLSNLD 162 (213)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 2344443322110000 0 00 0001111111000 115567777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
+...+.....+..+.+ .....+ .-.+|+...+..+|+++ .+|++|+++..
T Consensus 163 ~~~~~~l~~~l~~~~~---~~~~tv-i~~sH~~~~~~~~~d~i-~~l~~g~~~~~ 212 (213)
T cd03301 163 AKLRVQMRAELKRLQQ---RLGTTT-IYVTHDQVEAMTMADRI-AVMNDGQIQQI 212 (213)
T ss_pred HHHHHHHHHHHHHHHH---HcCCEE-EEEeCCHHHHHHhcCeE-EEEECCEEEec
Confidence 9987554443322211 111122 12239999999999998 78888877643
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.2e-15 Score=150.19 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=111.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 355678899999999999999999999999999 6799999999997653221 1355555 3333
Q ss_pred ceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+...... . . ......++.++..+ --+.+++|+ .+|+++++| ||++.+|
T Consensus 89 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD---EPts~LD 165 (369)
T PRK11000 89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLD 165 (369)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 4555565543211000 0 0 00001111111111 115677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 166 ~~~~~~l~~~L~~l~~---~~g~tv-I~vTHd~~~~~~~~d~i-~vl~~G~i~~~g~ 217 (369)
T PRK11000 166 AALRVQMRIEISRLHK---RLGRTM-IYVTHDQVEAMTLADKI-VVLDAGRVAQVGK 217 (369)
T ss_pred HHHHHHHHHHHHHHHH---HhCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9987655444332221 111122 12249999999999999 8999999887664
No 78
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.54 E-value=7.2e-15 Score=134.74 Aligned_cols=172 Identities=21% Similarity=0.324 Sum_probs=105.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh---hhc--------cCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLF--------KPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~--------~~~ 83 (394)
+.....+.+|+++||+|++|||||||.++|+|+ .+|++|.|.++|.++.... ..+ .|.
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-----------~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGL-----------EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCceEEECCcccCccccchhhccceeEEecCCc
Confidence 456677899999999999999999999999999 6799999999997543321 001 111
Q ss_pred CccccceEEEeccc---ccccccCC----------CCCchhhhhH----HH-hhhhHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 84 SAVPAFLEIHDIAG---LVRGAHEG----------QGLGNSFLSH----IR-AVDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 84 ~~~~~~i~~~D~~g---l~~~~~~~----------~~l~~~~l~~----l~-~~d~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
..+.+..++.+... ...+..+. -++...++.+ +. .--.-+.++||+ -+|+++++| ||+
T Consensus 93 ~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlD---Ept 169 (252)
T COG1124 93 SSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILD---EPT 169 (252)
T ss_pred cccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEec---Cch
Confidence 11111111111100 00000000 0011111100 00 000014677777 799999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.||+..+..++..+..+.+..+ -.. .-.+|++..++.+|||| .++++|.++...+
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~---lt~-l~IsHdl~~v~~~cdRi-~Vm~~G~ivE~~~ 225 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERG---LTY-LFISHDLALVEHMCDRI-AVMDNGQIVEIGP 225 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcC---ceE-EEEeCcHHHHHHHhhhe-eeeeCCeEEEeec
Confidence 99999988666665544443321 111 11239999999999999 9999999876543
No 79
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.3e-15 Score=139.16 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=108.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~-~ 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++. .
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 90 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-----------PRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc
Confidence 455678899999999999999999999999999 679999999999765321 1 1355554 2
Q ss_pred cccceEEEecccccccccCCCCC---chhhhhHHH-hhh--------------hHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQGL---GNSFLSHIR-AVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~l---~~~~l~~l~-~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
.+...++.|...+.......... ...+++.+. ..+ .-+.+++++ .+|+++++| ||+++
T Consensus 91 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD---EPt~~ 167 (237)
T PRK11614 91 VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD---EPSLG 167 (237)
T ss_pred cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---Ccccc
Confidence 22234444443321100000000 011111111 100 114566776 799999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+|....+.....+..+.+ ....+.. .+|+...+.++||++ .+|++|+++..++.
T Consensus 168 LD~~~~~~l~~~l~~~~~----~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 221 (237)
T PRK11614 168 LAPIIIQQIFDTIEQLRE----QGMTIFL-VEQNANQALKLADRG-YVLENGHVVLEDTG 221 (237)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCEEEE-EeCcHHHHHhhCCEE-EEEeCCEEEeeCCH
Confidence 999886555443322211 1122212 239999999999999 88999998877643
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.54 E-value=2.4e-15 Score=140.67 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=107.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h---hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~---~~~~~~~-~ 85 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||. .
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 85 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-----------LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc
Confidence 455678899999999999999999999999999 679999999998765321 1 2355555 2
Q ss_pred cccceEEEecccccccccCCC------------C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeE
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQ------------G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~------------~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl 135 (394)
.+..+++.|...+........ . ....+++.++..+ --+.+++++ .+|+++
T Consensus 86 l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 86 LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 333344444432211100000 0 0001111111000 115567777 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++++|......+...+..+. +....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 166 llD---EPt~~LD~~~~~~l~~~l~~~~----~~~~tii~-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (236)
T cd03219 166 LLD---EPAAGLNPEETEELAELIRELR----ERGITVLL-VEHDMDVVMSLADRV-TVLDQGRVIAEGT 226 (236)
T ss_pred EEc---CCcccCCHHHHHHHHHHHHHHH----HCCCEEEE-EecCHHHHHHhCCEE-EEEeCCEEEeecC
Confidence 999 9999999988755544332221 11112212 249999999999999 8889998876654
No 81
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.54 E-value=3.4e-15 Score=139.29 Aligned_cols=171 Identities=16% Similarity=0.247 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h---hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~---~~~~~~~-~ 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||. .
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-----------VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS 85 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc
Confidence 455677899999999999999999999999999 679999999998764321 1 2355555 2
Q ss_pred cccceEEEecccccccccCCC--C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQ--G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~--~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.+..+++.|...+........ . ....++..+...+ --+.+++++ .+|+++++| ||++
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~ 162 (232)
T cd03218 86 IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD---EPFA 162 (232)
T ss_pred ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcc
Confidence 333345555433221100000 0 0001111111111 115566777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++|....+.....+..+. +-...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 163 ~LD~~~~~~~~~~l~~~~----~~~~ti-i~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 216 (232)
T cd03218 163 GVDPIAVQDIQKIIKILK----DRGIGV-LITDHNVRETLSITDRA-YIIYEGKVLAEGT 216 (232)
T ss_pred cCCHHHHHHHHHHHHHHH----HCCCEE-EEEeCCHHHHHHhCCEE-EEEECCeEEEEeC
Confidence 999998755544432221 111122 12249999999999999 8889999876654
No 82
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.54 E-value=6e-15 Score=132.76 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=95.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc--
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA-- 85 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~-- 85 (394)
.....+++|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++..
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR 86 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc
Confidence 44567899999999999999999999999999 6799999999997653221 12334331
Q ss_pred --cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHH
Q 016139 86 --VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l 162 (394)
.....++.|...+... .+.|++ ++ +.+++++ .+|+++++| ||++++|+...+.....+..+
T Consensus 87 ~~~~~~~t~~e~l~~~~~----LS~G~~--qr-------l~la~al~~~p~llllD---EP~~~LD~~~~~~l~~~l~~~ 150 (182)
T cd03215 87 EGLVLDLSVAENIALSSL----LSGGNQ--QK-------VVLARWLARDPRVLILD---EPTRGVDVGAKAEIYRLIREL 150 (182)
T ss_pred CcccCCCcHHHHHHHHhh----cCHHHH--HH-------HHHHHHHccCCCEEEEC---CCCcCCCHHHHHHHHHHHHHH
Confidence 1222233332221110 111111 22 3444555 699999999 999999999875554433222
Q ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
.+ . ...+.. .+|+...+..+|+++ .+|++|+
T Consensus 151 ~~---~-~~tiii-~sh~~~~~~~~~d~v-~~l~~G~ 181 (182)
T cd03215 151 AD---A-GKAVLL-ISSELDELLGLCDRI-LVMYEGR 181 (182)
T ss_pred HH---C-CCEEEE-EeCCHHHHHHhCCEE-EEecCCc
Confidence 11 0 112212 239999999999998 7777765
No 83
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.8e-15 Score=141.20 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=108.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 90 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-----------ERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH 90 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEccC
Confidence 455678899999999999999999999999999 679999999998765321 1 1456665
Q ss_pred c-cccceEEEecccccccccCC--C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 A-VPAFLEIHDIAGLVRGAHEG--Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 ~-~~~~i~~~D~~gl~~~~~~~--~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
. .+..+++.|...+....... . .....+++.+...+ .-+.+++++ .+|+++++| ||
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---EP 167 (233)
T cd03258 91 FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD---EA 167 (233)
T ss_pred cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CC
Confidence 2 23334555543321100000 0 00001111111100 115567776 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++|+.....+...+..+.+ .-...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~---~~~~tvii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (233)
T cd03258 168 TSALDPETTQSILALLRDINR---ELGLTIVL-ITHEMEVVKRICDRV-AVMEKGEVVEEGT 224 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHH---HcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999987554443322211 10112212 239999999999999 8889999886654
No 84
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.54 E-value=5.1e-15 Score=146.59 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=112.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+..|++++|+||||||||||+++|+|. ..|++|.|.++|+++.... ..|.+|. ..+.
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p 87 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-----------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFR 87 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 345677899999999999999999999999999 6799999999998764321 1355555 3334
Q ss_pred ceEEEeccccccccc---CCCC------CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCc
Q 016139 89 FLEIHDIAGLVRGAH---EGQG------LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~---~~~~------l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.+++.++..+..... .... .....++.++..+. -+.+++|+ .+|+++++| ||+
T Consensus 88 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD---EP~ 164 (353)
T PRK10851 88 HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD---EPF 164 (353)
T ss_pred CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCC
Confidence 455555554431110 0000 00011111111111 15677887 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.+|....+.+...+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 165 s~LD~~~r~~l~~~L~~l~~---~~g~ti-i~vTHd~~ea~~~~Dri-~vl~~G~i~~~g~ 220 (353)
T PRK10851 165 GALDAQVRKELRRWLRQLHE---ELKFTS-VFVTHDQEEAMEVADRV-VVMSQGNIEQAGT 220 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999987655444332221 111122 12249999999999999 9999999987765
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.54 E-value=2.2e-15 Score=139.15 Aligned_cols=165 Identities=21% Similarity=0.240 Sum_probs=100.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~ 83 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 89 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQ 89 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-----------cCCCceeEEECCEehhhcchhHHHHHHhhcEEEEee
Confidence 455678899999999999999999999999999 679999999998765421 1 135555
Q ss_pred C-ccccceEEEecccccccccCC-----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~~-----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+..+++.|...+....... ......+++.+...+ .-+.+++++ .+|+++++| |
T Consensus 90 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---E 166 (218)
T cd03255 90 SFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD---E 166 (218)
T ss_pred ccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc---C
Confidence 4 223333444433321110000 000001111110000 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
|++++|+...+.+...+..+.+ .....+.. .+|+...+. +|+++ .+|++|+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~-~~d~v-~~l~~G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNK---EAGTTIVV-VTHDPELAE-YADRI-IELRDGK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCeEEE-EECCHHHHh-hhcEE-EEeeCCc
Confidence 9999999987655444332211 01112212 239998886 89988 7777775
No 86
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=4.8e-15 Score=132.92 Aligned_cols=150 Identities=21% Similarity=0.272 Sum_probs=93.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh---------hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---------~~~~~~~~ 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++..
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 85 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDF 85 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccchhHHHHhhcEEEEecCC
Confidence 445678899999999999999999999999999 6789999999987653221 02233321
Q ss_pred -cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHH
Q 016139 86 -VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (394)
Q Consensus 86 -~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~ 163 (394)
.....++.|...+. .+.|++ +++ .+++++ .+|+++++| ||++++|..........+..+.
T Consensus 86 ~~~~~~t~~~~l~~~------lS~G~~--qr~-------~la~al~~~p~llilD---EP~~~LD~~~~~~l~~~l~~~~ 147 (178)
T cd03229 86 ALFPHLTVLENIALG------LSGGQQ--QRV-------ALARALAMDPDVLLLD---EPTSALDPITRREVRALLKSLQ 147 (178)
T ss_pred ccCCCCCHHHheeec------CCHHHH--HHH-------HHHHHHHCCCCEEEEe---CCcccCCHHHHHHHHHHHHHHH
Confidence 11111222211110 111111 223 344444 599999999 9999999998755544332221
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+ .....+.. .+|+...+..+|+++ .+|++|
T Consensus 148 ~---~~~~tiii-~sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 148 A---QLGITVVL-VTHDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred H---hcCCEEEE-EeCCHHHHHHhcCEE-EEEeCC
Confidence 1 10112212 239999988899988 566655
No 87
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.53 E-value=1.9e-15 Score=139.24 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 87 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-----------LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQD 87 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEecC
Confidence 455678899999999999999999999999999 668999999998765321 1 1355655
Q ss_pred -ccccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
..+...++.|...+...... . ......+++.++..+ .-+.+++++ .+|+++++| ||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD---EP 164 (214)
T TIGR02673 88 FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD---EP 164 (214)
T ss_pred hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---CC
Confidence 22333455554332210000 0 000001111111100 115566776 799999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
++++|......+...+..+.+ ....+.. .+|+...+..+||++ .+|++|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~----~~~tii~-~tH~~~~~~~~~d~i-~~l~~G 213 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNK----RGTTVIV-ATHDLSLVDRVAHRV-IILDDG 213 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHH----cCCEEEE-EeCCHHHHHHhcCEE-EEecCC
Confidence 999999997655444332211 1122212 249999999999988 666665
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.53 E-value=3.3e-15 Score=137.99 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=105.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..+
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 90 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLY 90 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEEcccCHHHHHhhEEEecCCcccC
Confidence 445677899999999999999999999999999 6799999999987654211 1355655 233
Q ss_pred cceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+...... . .......++.+...+ .-+.+++++ .+|+++++| ||++++
T Consensus 91 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~~L 167 (218)
T cd03266 91 DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD---EPTTGL 167 (218)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCcCC
Confidence 33455554332211000 0 000011111111111 115677777 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
|....+.....+..+. .-...+ .-.+|+...+..+|+++ .+|++|++..
T Consensus 168 D~~~~~~l~~~l~~~~----~~~~ti-i~~tH~~~~~~~~~d~i-~~l~~G~i~~ 216 (218)
T cd03266 168 DVMATRALREFIRQLR----ALGKCI-LFSTHIMQEVERLCDRV-VVLHRGRVVY 216 (218)
T ss_pred CHHHHHHHHHHHHHHH----HCCCEE-EEEeCCHHHHHHhcCEE-EEEECCEEee
Confidence 9998755544332221 101122 12249999999999998 7888887653
No 89
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=8.2e-15 Score=134.67 Aligned_cols=168 Identities=19% Similarity=0.308 Sum_probs=104.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---hhhccCCC-ccccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AVPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---~~~~~~~~-~~~~~i 90 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||. ..+...
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~ 85 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKM 85 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcCC
Confidence 445677899999999999999999999999999 679999999999776421 11355555 233334
Q ss_pred EEEecccccccccC---C--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 91 EIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 91 ~~~D~~gl~~~~~~---~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
++.|...+...... . .....++++.+...+ ..+.+++++ .+|+++++| ||++++|+.
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD---EP~~~LD~~ 162 (210)
T cd03269 86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD---EPFSGLDPV 162 (210)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHH
Confidence 44444322110000 0 000011111111000 114566776 899999999 999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
..+.....+..+.+ + ...+.. .+|+...+..+|+++ .+|.+|+++.
T Consensus 163 ~~~~~~~~l~~~~~---~-~~tii~-~sH~~~~~~~~~d~i-~~l~~g~i~~ 208 (210)
T cd03269 163 NVELLKDVIRELAR---A-GKTVIL-STHQMELVEELCDRV-LLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHH---C-CCEEEE-ECCCHHHHHHhhhEE-EEEeCCEEEe
Confidence 86555443322111 0 112212 239999999999999 7788887653
No 90
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.53 E-value=3.7e-15 Score=137.02 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=100.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-- 85 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+..
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-----------LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDD 86 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEcccCCHHHHHhhceEEecChhh
Confidence 455677899999999999999999999999999 679999999998765321 1 13556552
Q ss_pred cccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.....++.|...+...... . ......+++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 87 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt~ 163 (211)
T cd03225 87 QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD---EPTA 163 (211)
T ss_pred hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 1223344443322110000 0 000001111111100 115567777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
++|+...+.+...+..+.+ . ...+.. .+|+...+..+|+++ .+|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~---~-~~tvi~-~sH~~~~~~~~~d~i-~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKA---E-GKTIII-VTHDLDLLLELADRV-IVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHH---c-CCEEEE-EeCCHHHHHHhCCEE-EEEeCC
Confidence 9999987555444322211 1 112212 249999999999988 666665
No 91
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.5e-14 Score=128.44 Aligned_cols=174 Identities=17% Similarity=0.329 Sum_probs=118.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-----hhh---hccCCCcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ---LFKPKSAV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~~---~~~~~~~~ 86 (394)
.....++++|.+.+||||||||||||+.+++++ +.+++|.|.++|.++.. +++ +......+
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI 86 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence 345667899999999999999999999999999 78999999999987643 222 22223356
Q ss_pred ccceEEEecccccccccC-CC-------------------CCchhhhhHHHhhh-hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 87 PAFLEIHDIAGLVRGAHE-GQ-------------------GLGNSFLSHIRAVD-GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~~-------------------~l~~~~l~~l~~~d-~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
...+++.|+.++++.++. |+ .+.++++..+..-. --.+++-.+ ++.+.+++| ||+
T Consensus 87 ~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD---EPL 163 (252)
T COG4604 87 NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD---EPL 163 (252)
T ss_pred hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec---Ccc
Confidence 677899999999987754 21 11112222211000 002333344 788999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+.+|+-...-. +..+++.-+.+.+.+..- -|+.+....-.|.| ..|.+|+++..|+.+
T Consensus 164 NNLDmkHsv~i---Mk~Lrrla~el~KtiviV-lHDINfAS~YsD~I-VAlK~G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQI---MKILRRLADELGKTIVVV-LHDINFASCYSDHI-VALKNGKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHH---HHHHHHHHHHhCCeEEEE-EecccHHHhhhhhe-eeecCCEEEecCCHH
Confidence 99999876333 333444344444433222 29998888888999 889999999988643
No 92
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.53 E-value=2.2e-15 Score=141.53 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------hhhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~~~~-~ 85 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.++. .
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 87 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-----------TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT 87 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc
Confidence 456678899999999999999999999999999 679999999998765321 12355554 2
Q ss_pred cccceEEEecccccccccC-------------CCCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEe
Q 016139 86 VPAFLEIHDIAGLVRGAHE-------------GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-------------~~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~l 137 (394)
.+..+++.|...+...... .......+++.++.. -.-+.+++|+ .+|+++++
T Consensus 88 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 88 VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 3333444443322110000 000000111111000 0115567777 89999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
| ||++++|+.........+..+. . ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 168 D---EPt~~LD~~~~~~l~~~l~~~~----~-~~tii~-~sH~~~~~~~~~d~i-~~l~~g~~~~~~~ 225 (242)
T TIGR03411 168 D---EPVAGMTDEETEKTAELLKSLA----G-KHSVVV-VEHDMEFVRSIADKV-TVLHQGSVLAEGS 225 (242)
T ss_pred c---CCccCCCHHHHHHHHHHHHHHh----c-CCEEEE-EECCHHHHHHhCCEE-EEEECCeEEeeCC
Confidence 9 9999999998755544333221 1 112212 239999999999999 8899999886654
No 93
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.53 E-value=5.4e-15 Score=137.38 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=104.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----------hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~~~~ 84 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 90 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGL-----------LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccchhhHHHhhccEEEEecC
Confidence 456778899999999999999999999999999 6799999999987653211 1355555
Q ss_pred c---cccceEEEeccccccccc---CCCCCch----hhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEec
Q 016139 85 A---VPAFLEIHDIAGLVRGAH---EGQGLGN----SFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~~~~---~~~~l~~----~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld 138 (394)
. .....++.|...+..... ....... ..++.+... + --+.+++++ .+|+++++|
T Consensus 91 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 91 PMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred chhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 3 222334444332110000 0000000 111111110 0 015566776 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
||++++|....+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++.
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~~~~d~i-~~l~~G~i~~ 226 (228)
T cd03257 171 ---EPTSALDVSVQAQILDLLKKLQE---ELGLTLLF-ITHDLGVVAKIADRV-AVMYAGKIVE 226 (228)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHH---HcCCEEEE-EeCCHHHHHHhcCeE-EEEeCCEEEe
Confidence 99999999987655444332211 10112212 249999999999999 8888887653
No 94
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.53 E-value=9.4e-15 Score=137.10 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=108.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------h--hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~~~~- 84 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 86 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-----------EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF 86 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence 455678899999999999999999999999999 679999999999765321 1 1455555
Q ss_pred ccccceEEEeccccccc-ccC-CC----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 AVPAFLEIHDIAGLVRG-AHE-GQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~-~~~-~~----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
..+..+++.|...+... ... .. ......++.+...+ ..+.+++++ .+|+++++| ||
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP 163 (240)
T PRK09493 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD---EP 163 (240)
T ss_pred ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 23333444444332210 000 00 00001111111100 115667777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++++|+...+.....+..+. +-...+.. .+|+...+..+|+++ .+|++|+++..++.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~----~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 220 (240)
T PRK09493 164 TSALDPELRHEVLKVMQDLA----EEGMTMVI-VTHEIGFAEKVASRL-IFIDKGRIAEDGDP 220 (240)
T ss_pred cccCCHHHHHHHHHHHHHHH----HcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEeeCCH
Confidence 99999998755544332221 11122212 249999999999999 88899998876543
No 95
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.53 E-value=2.9e-15 Score=148.69 Aligned_cols=172 Identities=16% Similarity=0.244 Sum_probs=112.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCce--eEEecCCcchhhhh-----hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE--ARVNIPDERFEWLC-----QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~--G~i~v~g~~~~~l~-----~~~~~~~-~~ 86 (394)
......+..|++++|+||||||||||+++|+|. ..|++ |.|.++|.++.... ..|.+|. ..
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l 90 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-----------VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYAL 90 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCccc
Confidence 445677899999999999999999999999999 67899 99999997653221 1355555 34
Q ss_pred ccceEEEecccccccccC-C-CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 87 PAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+..+++.++..+...... . .. .....++.++..+ --+.+++|+ .+|+++++| ||++.
T Consensus 91 ~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD---EP~s~ 167 (362)
T TIGR03258 91 FPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD---EPLSA 167 (362)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---Ccccc
Confidence 445566665544311110 0 00 0001111111111 115677887 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~-~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|....+.+...+..+.+ +. ...+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 168 LD~~~r~~l~~~l~~l~~---~~~g~ti-l~vTHd~~ea~~l~dri-~vl~~G~i~~~g~ 222 (362)
T TIGR03258 168 LDANIRANMREEIAALHE---ELPELTI-LCVTHDQDDALTLADKA-GIMKDGRLAAHGE 222 (362)
T ss_pred CCHHHHHHHHHHHHHHHH---hCCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999887555554432221 11 1122 22249999999999999 9999999987765
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=2.3e-15 Score=143.83 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 455677899999999999999999999999999 679999999998765321 1135555
Q ss_pred C-ccccceEEEecccccccccC--CC---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~--~~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+..+++.|...+...... .. .....+++.++..+ -.+.+++++ .+|+++++| |
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD---E 186 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD---E 186 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 4 22333444444332110000 00 00001111111100 015566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|....+.+...+..+.+ .....+... +|+...+..+|+++ .+|++|++...++
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~---~~g~tiii~-tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 244 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQA---ELQKTIVFI-THDLDEALRLGDRI-AIMKDGRLVQVGT 244 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999999987655544332211 111222122 49999999999999 8889998876654
No 97
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.52 E-value=4e-15 Score=137.18 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-----------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEcccCChhccceEEEeccCccCC
Confidence 456778999999999999999999999999999 6799999999987653211 1355555 2333
Q ss_pred ceEEEeccccccc-ccC-C---CCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRG-AHE-G---QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~-~~~-~---~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|...+... ... . .......++.++..+. -+.+++++ .+|+++++| ||++++|
T Consensus 84 ~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD 160 (213)
T TIGR01277 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD---EPFSALD 160 (213)
T ss_pred CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCC
Confidence 3455555433210 000 0 0000111111111111 15567776 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
....+.....+..+.+ .....+ .-.+|+...+..+||++ .+|++|++...+
T Consensus 161 ~~~~~~~~~~l~~~~~---~~~~ti-i~vsh~~~~~~~~~d~v-~~l~~g~i~~~~ 211 (213)
T TIGR01277 161 PLLREEMLALVKQLCS---ERQRTL-LMVTHHLSDARAIASQI-AVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHhhcCeE-EEEECCeEEEec
Confidence 9987555444322211 111122 12249999999999999 888889887654
No 98
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.52 E-value=6.2e-15 Score=137.10 Aligned_cols=176 Identities=19% Similarity=0.183 Sum_probs=108.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh---------hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---------~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|..... -..|++|.|.++|.++.... ..|.||..
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLI------PGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4556788999999999999999999999999992000 00689999999998764321 13566652
Q ss_pred cccceEEEecccccccccC--C----CCCchhhhhHHHh-----h-----------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--G----QGLGNSFLSHIRA-----V-----------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~----~~l~~~~l~~l~~-----~-----------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.|...+...... . .......++.+.. . -..+.+++++ .+|+++++| |
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---E 167 (227)
T cd03260 91 NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD---E 167 (227)
T ss_pred hhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 2113455554332110000 0 0000011111100 0 0124566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|..........+..+. .. ..+.. .+|+...+..+|+++ .+|++|+++..++.
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~---~~--~tii~-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (227)
T cd03260 168 PTSALDPISTAKIEELIAELK---KE--YTIVI-VTHNMQQAARVADRT-AFLLNGRLVEFGPT 224 (227)
T ss_pred CCccCCHHHHHHHHHHHHHHh---hC--cEEEE-EeccHHHHHHhCCEE-EEEeCCEEEEecCc
Confidence 999999998765544433221 11 12212 249999999999999 88899998766543
No 99
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=7.8e-15 Score=134.27 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=101.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CceeEEecCCcchhhhh------hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWLC------QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~~~~l~------~~~~~~~- 84 (394)
......+.+|++++|+|+||||||||+++|+|. .. |++|.|.++|.++.... ..|.++.
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~ 92 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-----------TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEED 92 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhccc-----------CCCCCCcceEEEECCEECccchhhhcceEEEEeccc
Confidence 556677899999999999999999999999999 44 78999999997653221 1344544
Q ss_pred ccccceEEEecccccccccC-----CCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhH
Q 016139 85 AVPAFLEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~-----~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~d 158 (394)
.....+++.|+..+...... ..+.|+ .+++ .+++++ .+|+++++| ||++++|..........
T Consensus 93 ~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge--~qrl-------~laral~~~p~llllD---EPt~~LD~~~~~~~~~~ 160 (202)
T cd03233 93 VHFPTLTVRETLDFALRCKGNEFVRGISGGE--RKRV-------SIAEALVSRASVLCWD---NSTRGLDSSTALEILKC 160 (202)
T ss_pred ccCCCCcHHHHHhhhhhhccccchhhCCHHH--HHHH-------HHHHHHhhCCCEEEEc---CCCccCCHHHHHHHHHH
Confidence 22333444454333211100 011111 1223 344444 599999999 99999999987655444
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+..+.+ .....+...++|....+..+|+++ .+|++|+++.
T Consensus 161 l~~~~~---~~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G~i~~ 200 (202)
T cd03233 161 IRTMAD---VLKTTTFVSLYQASDEIYDLFDKV-LVLYEGRQIY 200 (202)
T ss_pred HHHHHH---hCCCEEEEEEcCCHHHHHHhCCeE-EEEECCEEEe
Confidence 332211 101111122226677888999999 8888888754
No 100
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.52 E-value=6e-15 Score=140.93 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......++.|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 92 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-----------IAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQS 92 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccChhhHHHHhhcEEEEecc
Confidence 455678899999999999999999999999999 679999999998765321 1 1355555
Q ss_pred -ccccceEEEecccccccccCCCC------CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQG------LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~------l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..+..+++.|...+......... .....+..++..+ .-+.+++++ .+|+++++| |
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---E 169 (269)
T PRK11831 93 GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD---E 169 (269)
T ss_pred cccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 22333445554433110000000 0000111111111 115566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|....+.+...+..+.+ .....+... +|++..+..+|+++ .+|++|+++..++
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~---~~g~tiiiv-sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (269)
T PRK11831 170 PFVGQDPITMGVLVKLISELNS---ALGVTCVVV-SHDVPEVLSIADHA-YIVADKKIVAHGS 227 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHH---hcCcEEEEE-ecCHHHHHHhhCEE-EEEECCEEEEeCC
Confidence 9999999987555444332211 101122122 39999999999999 8889999887654
No 101
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=2.8e-15 Score=150.27 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=110.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-----------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-----------IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 556778899999999999999999999999999 679999999999765321 1235566
Q ss_pred C-ccccceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+..+++.|+..+...... . . .....+++.+...+ --+.+++|+ .+|+++++| |
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD---E 190 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD---E 190 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 5 33334555555443211000 0 0 00001111111000 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+.+ +....+.. .+|+.+++..+|+++ .+|++|+++..++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~---~~g~TIIi-vTHd~~~~~~~~Dri-~vL~~G~i~~~g~ 248 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQA---KHQRTIVF-ISHDLDEAMRIGDRI-AIMQNGEVVQVGT 248 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHH---HCCCeEEE-EECCHHHHHHhCCEE-EEEECCEEEecCC
Confidence 9999999987555444332211 11122212 249999999999999 8999999876654
No 102
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.52 E-value=3.5e-15 Score=148.70 Aligned_cols=171 Identities=11% Similarity=0.160 Sum_probs=113.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~ 89 (394)
.....+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|. ..+..
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPH 100 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 45677889999999999999999999999999 6799999999998764321 1355555 34455
Q ss_pred eEEEecccccccccC-C-CC---CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 90 LEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 90 i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
+++.|+..+...... . .. .....++.++..+. -+.+++|+ .+|+++++| ||++.+|.
T Consensus 101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD---EP~s~LD~ 177 (375)
T PRK09452 101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD---ESLSALDY 177 (375)
T ss_pred CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcCCH
Confidence 666776654321110 0 00 00011111111111 15677877 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
...+.+...+..+.+ .....+ .-.+|+..++..++|++ .+|++|++...++
T Consensus 178 ~~r~~l~~~L~~l~~---~~g~ti-I~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 228 (375)
T PRK09452 178 KLRKQMQNELKALQR---KLGITF-VFVTHDQEEALTMSDRI-VVMRDGRIEQDGT 228 (375)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 887655444332222 111122 12249999999999999 9999999887664
No 103
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.2e-15 Score=143.43 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA- 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~- 85 (394)
-+.....+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++..
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 88 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-----------LKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheEEEecCcc
Confidence 3556678899999999999999999999999999 679999999999765321 1 13555542
Q ss_pred -cccceEEEecccccccccC-CCC----CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 -VPAFLEIHDIAGLVRGAHE-GQG----LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 -~~~~i~~~D~~gl~~~~~~-~~~----l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.....++.|...+...... ... ....++..+...+ .-+.+++|+ .+|+++++| ||+
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD---EPt 165 (277)
T PRK13652 89 DQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD---EPT 165 (277)
T ss_pred cccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 1112333443322110000 000 0001111110000 114566776 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+++|+.........+..+.+ .....+ .-.+|++..+..+|+++ .+|.+|+++..++.
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~---~~g~tv-li~tH~~~~~~~~~drv-~~l~~G~i~~~g~~ 222 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPE---TYGMTV-IFSTHQLDLVPEMADYI-YVMDKGRIVAYGTV 222 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEecCHHHHHHhCCEE-EEEECCeEEEECCH
Confidence 99999986554443322211 111122 22249999999999999 89999999877653
No 104
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.52 E-value=5.3e-15 Score=146.70 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKS 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~~ 84 (394)
.....+..|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-----------TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 45677899999999999999999999999999 679999999998765321 1 1345554
Q ss_pred -ccccceEEEecccccccccCCCCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
..+..+++.|+..+.......... ...+++.++..+ --+.+++|+ .+|+++++| ||++
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD---EPts 160 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD---EPLA 160 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCc
Confidence 233344555554332111000000 011111111111 115667777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++|....+.+...+..+.+ .....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 161 ~LD~~~~~~l~~~L~~l~~---~~g~tiii-vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 215 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHA---EFGIPILY-VSHSLQEVLRLADRV-VVLEDGRVAAAGP 215 (354)
T ss_pred CCCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 9999987665544332221 11112212 249999999999999 8999999887764
No 105
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.2e-15 Score=140.65 Aligned_cols=172 Identities=13% Similarity=0.229 Sum_probs=107.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~-~ 85 (394)
......+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.++. .
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 90 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-----------YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR 90 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc
Confidence 455667889999999999999999999999999 679999999999765321 1 1344554 2
Q ss_pred cccceEEEeccccccc----------c------cCC-C---CCchhhhhHHHhhh--------------hHHhhhhcc-C
Q 016139 86 VPAFLEIHDIAGLVRG----------A------HEG-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-E 130 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~----------~------~~~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~ 130 (394)
.+..+++.|+..+... . ... . .....+++.++..+ .-+.+++++ .
T Consensus 91 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 170 (255)
T PRK11300 91 LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVT 170 (255)
T ss_pred cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 3333455443322100 0 000 0 00001111111101 115567777 8
Q ss_pred CCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|+++++| ||++++|......+...+..+.+ +....+... +|+...+..+|+++ .+|++|+++..++
T Consensus 171 ~p~llllD---EPt~~LD~~~~~~l~~~L~~~~~---~~~~tii~~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 237 (255)
T PRK11300 171 QPEILMLD---EPAAGLNPKETKELDELIAELRN---EHNVTVLLI-EHDMKLVMGISDRI-YVVNQGTPLANGT 237 (255)
T ss_pred CCCEEEEc---CCccCCCHHHHHHHHHHHHHHHh---hcCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEecCC
Confidence 99999999 99999999987555444332211 111122122 39999999999999 8889999887654
No 106
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.51 E-value=9e-15 Score=134.69 Aligned_cols=164 Identities=17% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCCccc---cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSAVP---AF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~~~~---~~ 89 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||.... ..
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-----------LKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCccHHHHHhheEEeccccccccCCC
Confidence 455678899999999999999999999999999 6799999999997654222 2455654211 11
Q ss_pred eEEEecccccccccC---------CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 90 LEIHDIAGLVRGAHE---------GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 90 i~~~D~~gl~~~~~~---------~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.++.|...+...... .......+++.+...+ ..+.+++++ .+|+++++| ||++
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EPt~ 161 (213)
T cd03235 85 ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD---EPFA 161 (213)
T ss_pred CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 344443322111000 0000011111111111 115567777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
++|+.........+..+. +-...+.. .+|+...+..+|+++ .+|++|
T Consensus 162 ~LD~~~~~~l~~~l~~~~----~~~~tvi~-~sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 162 GVDPKTQEDIYELLRELR----REGMTILV-VTHDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHH----hcCCEEEE-EeCCHHHHHHhcCEE-EEEcCc
Confidence 999998655444332211 11112212 239999999999998 666654
No 107
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.6e-15 Score=146.42 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=108.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKS 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~~ 84 (394)
.....++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 56778899999999999999999999999999 679999999998765321 1 1345554
Q ss_pred -ccccceEEEecccccccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
..+..+++.|+..+..... .......+++.++..+ --+.+++++ .+|+++++| ||++.+|
T Consensus 85 ~~l~~~~tv~enl~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD---EPts~LD 160 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMAKS-MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD---EPLASLD 160 (352)
T ss_pred cccCCCCcHHHHHHhhhhhh-hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccCC
Confidence 2333345545443321100 0000011111111111 115567777 799999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.+...+..+.+ .....+ .-.+|+..++..+||++ .+|++|++...++
T Consensus 161 ~~~~~~l~~~L~~l~~---~~g~ti-i~vTHd~~~~~~~~d~i-~~l~~G~i~~~g~ 212 (352)
T PRK11144 161 LPRKRELLPYLERLAR---EINIPI-LYVSHSLDEILRLADRV-VVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHHHHHHHHHH---hcCCeE-EEEecCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 9987655444332211 111122 12249999999999999 8999999887664
No 108
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.51 E-value=7e-15 Score=132.06 Aligned_cols=152 Identities=23% Similarity=0.373 Sum_probs=97.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---- 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKELARKIAYVPQ---- 80 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH----
Confidence 445677899999999999999999999999999 6799999999987653211 122222
Q ss_pred cceEEEecccccccc---cCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHH
Q 016139 88 AFLEIHDIAGLVRGA---HEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~---~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~ 163 (394)
+.+..|+.... ....+.|++ +++ .+++++ .+|+++++| ||++++|....+.....+..+.
T Consensus 81 ----~l~~~gl~~~~~~~~~~LS~G~~--qrl-------~laral~~~p~llllD---EP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 81 ----ALELLGLAHLADRPFNELSGGER--QRV-------LLARALAQEPPILLLD---EPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred ----HHHHcCCHhHhcCCcccCCHHHH--HHH-------HHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHHHHH
Confidence 22222222111 111111221 233 344554 699999999 9999999988755544433221
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+ +....+.. .+|+...+..+||++ .+|++|++..
T Consensus 145 ~---~~~~tiii-~sh~~~~~~~~~d~~-~~l~~g~i~~ 178 (180)
T cd03214 145 R---ERGKTVVM-VLHDLNLAARYADRV-ILLKDGRIVA 178 (180)
T ss_pred H---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 1 10112212 239999999999999 7788887653
No 109
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.4e-14 Score=135.93 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=107.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------h--hhhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l--~~~~~~~~~- 85 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.|+..
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----------VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS 88 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc
Confidence 455678899999999999999999999999999 67999999999876532 1 124566652
Q ss_pred cccceEEEecccccccccC---CC---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 VPAFLEIHDIAGLVRGAHE---GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~---~~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
....+++.|...+...... .. .....+++.+...+ .-+.+++++ .+|+++++| ||+
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 165 (241)
T PRK10895 89 IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD---EPF 165 (241)
T ss_pred ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCc
Confidence 3333455454332211000 00 00011111111001 115566777 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++|+...+.....+..+. .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~----~~g~tiii-~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 220 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLR----DSGLGVLI-TDHNVRETLAVCERA-YIVSQGHLIAHGT 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHHH----hcCCEEEE-EEcCHHHHHHhcCEE-EEEeCCeEEeeCC
Confidence 9999988655444332221 11112212 239999999999999 8889999877654
No 110
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3e-14 Score=144.16 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=113.1
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh--------hccCCC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS 84 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--------~~~~~~ 84 (394)
+=......+.+|++.||+|.||||||||+|+|+|. ..|++|.|.++|+.+...+. ....|+
T Consensus 23 AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QE 91 (500)
T COG1129 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQE 91 (500)
T ss_pred eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECCEEccCCCHHHHHhCCcEEEeec
Confidence 33566778899999999999999999999999999 56999999999987653221 122333
Q ss_pred -ccccceEEEecccccccccCCCCCch---------hhhhHHHh---hh-----------hHHhhhhcc-CCCCeEEecC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQGLGN---------SFLSHIRA---VD-----------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~l~~---------~~l~~l~~---~d-----------~il~vv~a~-~~~~vl~ld~ 139 (394)
....++++.++.-+...+....++.+ +.++.+.. .+ -++.+++|+ .++.++++|
T Consensus 92 l~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlD- 170 (500)
T COG1129 92 LSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILD- 170 (500)
T ss_pred hhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 33445666666666554433211111 11111111 11 125677887 788899999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.|..-+.+.+...+..+.+ -...+.. .+|.++++.++|||+ .+|.+|+.+...+
T Consensus 171 --EPTaaLt~~E~~~Lf~~ir~Lk~----~Gv~ii~-ISHrl~Ei~~i~Dri-tVlRDG~~v~~~~ 228 (500)
T COG1129 171 --EPTAALTVKETERLFDLIRRLKA----QGVAIIY-ISHRLDEVFEIADRI-TVLRDGRVVGTRP 228 (500)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHh----CCCEEEE-EcCcHHHHHHhcCEE-EEEeCCEEeeecc
Confidence 99999888775444333222211 0101101 139999999999999 9999999886544
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.51 E-value=4.3e-15 Score=139.13 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=105.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------hhhccCCCc-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKSA-VP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~~~~~~~~-~~ 87 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~ 86 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-----------YVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLD 86 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCc
Confidence 455677899999999999999999999999999 679999999998765321 123556552 22
Q ss_pred cceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
...++.+...+...... . ......+++.++..+ --+.+++++ .+|+++++| ||++++
T Consensus 87 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~L 163 (236)
T TIGR03864 87 LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD---EPTVGL 163 (236)
T ss_pred ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccCC
Confidence 33444444332211000 0 000001111111000 115567777 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|....+.....+..+.+ .....+ .-.+|+...+.. |+++ .+|++|+++..++
T Consensus 164 D~~~~~~l~~~l~~~~~---~~~~ti-ii~sH~~~~~~~-~d~i-~~l~~G~i~~~~~ 215 (236)
T TIGR03864 164 DPASRAAIVAHVRALCR---DQGLSV-LWATHLVDEIEA-DDRL-VVLHRGRVLADGA 215 (236)
T ss_pred CHHHHHHHHHHHHHHHH---hCCCEE-EEEecChhhHhh-CCEE-EEEeCCeEEEeCC
Confidence 99987555443322211 111122 122399998865 9999 8889998876654
No 112
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1e-14 Score=138.18 Aligned_cols=171 Identities=14% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-V 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-~ 86 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+.. .
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARL-----------LTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCC
Confidence 445667899999999999999999999999999 679999999999765421 1 24556552 2
Q ss_pred ccceEEEecccccccc----cC--CCCCchhhhhHHHhh---h--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGA----HE--GQGLGNSFLSHIRAV---D--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~----~~--~~~l~~~~l~~l~~~---d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...+++.|...+.... .. ......+....+... . --+.+++|+ .+|+++++| |
T Consensus 88 ~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---E 164 (255)
T PRK11231 88 PEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD---E 164 (255)
T ss_pred CCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 3334444443221100 00 000000111111110 0 014566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.....+..+.+ ....+.. .+|+...+.++|+++ .+|++|++...++
T Consensus 165 P~~~LD~~~~~~l~~~l~~l~~----~~~tiii-~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 221 (255)
T PRK11231 165 PTTYLDINHQVELMRLMRELNT----QGKTVVT-VLHDLNQASRYCDHL-VVLANGHVMAQGT 221 (255)
T ss_pred CcccCCHHHHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHhcCEE-EEEECCeEEEEcC
Confidence 9999999887555443322211 1112212 249999999999999 8899999876654
No 113
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.51 E-value=6.1e-14 Score=139.67 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=110.2
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh--------hccCCC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS 84 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--------~~~~~~ 84 (394)
+.......+..|++-||+|.||||||||+++|.|. .+|++|.|.++|+.+..-+. ....|.
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 45677788999999999999999999999999999 67999999999987643221 112222
Q ss_pred -ccccceEEEecccccccccCCCCCch-hhhhHHHh-hh--------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQGLGN-SFLSHIRA-VD--------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~~l~~-~~l~~l~~-~d--------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....+++.++.-+......+..+.. +..+.+.. ++ --+.++.++ .+++++++|
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD-- 165 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD-- 165 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc--
Confidence 34455677776666543322111111 11111110 00 015577777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
||++-|-+..-+-....+ +++.+-.+.+.. .+|.+.++.++|||+ .+|..|+.+-.
T Consensus 166 -EPTaVLTP~E~~~lf~~l----~~l~~~G~tIi~-ITHKL~Ev~~iaDrv-TVLR~Gkvvgt 221 (501)
T COG3845 166 -EPTAVLTPQEADELFEIL----RRLAAEGKTIIF-ITHKLKEVMAIADRV-TVLRRGKVVGT 221 (501)
T ss_pred -CCcccCCHHHHHHHHHHH----HHHHHCCCEEEE-EeccHHHHHHhhCee-EEEeCCeEEee
Confidence 999888776633222221 122222222211 139999999999999 99999997643
No 114
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.6e-15 Score=143.04 Aligned_cols=172 Identities=14% Similarity=0.140 Sum_probs=108.7
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh---------hh--hhccC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~~ 82 (394)
-......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|+.+.. .. ..|.|
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~ 91 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVF 91 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhceEEEE
Confidence 3556678899999999999999999999999999 67999999999976531 11 13555
Q ss_pred CCc--cccceEEEecccccccccC-C-CC---CchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEecC
Q 016139 83 KSA--VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 83 ~~~--~~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld~ 139 (394)
+.. .....++.|...+...... . .. ....+++.++.. + -.+.+++|+ .+|+++++|
T Consensus 92 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD- 170 (287)
T PRK13641 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD- 170 (287)
T ss_pred eChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 542 1112344454432111000 0 00 001111111110 0 115566776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.........+..+ .+-...+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 171 --EPt~gLD~~~~~~l~~~l~~l----~~~g~tvli-vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 228 (287)
T PRK13641 171 --EPAAGLDPEGRKEMMQLFKDY----QKAGHTVIL-VTHNMDDVAEYADDV-LVLEHGKLIKHAS 228 (287)
T ss_pred --CCCCCCCHHHHHHHHHHHHHH----HhCCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998865544433221 111112212 249999999999999 8899999887765
No 115
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.9e-15 Score=147.80 Aligned_cols=171 Identities=13% Similarity=0.198 Sum_probs=113.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~ 89 (394)
.....+..|++++|+||||||||||+++|+|. ..|++|.|.++|+++.... ..|.+|. ..+..
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 105 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPH 105 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCC
Confidence 45677889999999999999999999999999 6799999999998754321 1455665 44556
Q ss_pred eEEEecccccccccC-C-CCCchh---hhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 90 LEIHDIAGLVRGAHE-G-QGLGNS---FLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 90 i~~~D~~gl~~~~~~-~-~~l~~~---~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
+++.|+..+...... . .....+ .++.++..+ --+.+++|+ .+|+++++| ||++.+|.
T Consensus 106 ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD---EP~s~LD~ 182 (377)
T PRK11607 106 MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD---EPMGALDK 182 (377)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 677776654321110 0 000001 111111110 115677877 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
...+.+...+..+.+ +....+ .-.+|+..++..+||++ .+|++|++...++
T Consensus 183 ~~r~~l~~~l~~l~~---~~g~ti-i~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 233 (377)
T PRK11607 183 KLRDRMQLEVVDILE---RVGVTC-VMVTHDQEEAMTMAGRI-AIMNRGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEEeCCEEEEEcC
Confidence 987655444332222 111122 12249999999999999 8999999987765
No 116
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5.8e-15 Score=141.43 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=108.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-- 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|..
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 90 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-----------YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDD 90 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHhhEEEEecChhh
Confidence 455677899999999999999999999999999 679999999999765321 1 14555542
Q ss_pred cccceEEEecccccccccC-CC----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.....++.+...+...... .. .....+++.+...+ --+.+++|+ .+|+++++| ||++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EPt~ 167 (274)
T PRK13647 91 QVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD---EPMA 167 (274)
T ss_pred hhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCc
Confidence 1222344444433211000 00 00001111111100 115567777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++|+.........+..+. .. ...+.. .+|+++.+.+.||++ .+|++|+++..++.
T Consensus 168 ~LD~~~~~~l~~~l~~~~---~~-g~tili-~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 222 (274)
T PRK13647 168 YLDPRGQETLMEILDRLH---NQ-GKTVIV-ATHDVDLAAEWADQV-IVLKEGRVLAEGDK 222 (274)
T ss_pred CCCHHHHHHHHHHHHHHH---HC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999998655444332221 11 122212 249999999999999 88999998877653
No 117
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=4.9e-15 Score=136.26 Aligned_cols=166 Identities=19% Similarity=0.243 Sum_probs=103.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCCc-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSA-VP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~~-~~ 87 (394)
......+.+| +++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. .+
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 84 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVY 84 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCCccccchHHHHhheEEecCCCccc
Confidence 4455678889 9999999999999999999999 6799999999997653211 13555552 22
Q ss_pred cceEEEecccccc---cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~---~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+.. +.... ......+++.++..+ --+.+++|+ .+|+++++| ||++++
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~L 161 (211)
T cd03264 85 PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD---EPTAGL 161 (211)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccC
Confidence 3344444433211 00000 000011111111100 115567777 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
|+...+.....+..+.+ ...+.. .+|+...+..+|+++ .+|++|+++.
T Consensus 162 D~~~~~~l~~~l~~~~~-----~~tii~-vsH~~~~~~~~~d~i-~~l~~g~i~~ 209 (211)
T cd03264 162 DPEERIRFRNLLSELGE-----DRIVIL-STHIVEDVESLCNQV-AVLNKGKLVF 209 (211)
T ss_pred CHHHHHHHHHHHHHHhC-----CCEEEE-EcCCHHHHHHhCCEE-EEEECCEEEe
Confidence 99987555443322211 112212 239999999999999 7888887654
No 118
>PRK10908 cell division protein FtsE; Provisional
Probab=99.50 E-value=7.6e-15 Score=136.10 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=104.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+ . ..|.||.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~ 87 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-----------ERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCChhHHHHHHhheEEEecC
Confidence 455678899999999999999999999999999 679999999998765321 1 1355655
Q ss_pred c-cccceEEEecccccc---cccCCC--CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 A-VPAFLEIHDIAGLVR---GAHEGQ--GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 ~-~~~~i~~~D~~gl~~---~~~~~~--~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
. .+...++.|...+.. +..... .....+++.+...+ .-+.+++++ .+|+++++| ||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 164 (222)
T PRK10908 88 HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD---EP 164 (222)
T ss_pred ccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 2 223344444433211 000000 00001111111000 115567777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
++++|....+.....+..+.+ -...+ .-.+|+...+..+|+++ .+|++|+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~----~~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNR----VGVTV-LMATHDIGLISRRSYRM-LTLSDGHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHH----CCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEc
Confidence 999999886555443332211 01112 12249999999999999 788888765
No 119
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.50 E-value=1.1e-14 Score=135.25 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---hhhccCCC-ccccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AVPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---~~~~~~~~-~~~~~i 90 (394)
......+.+|++++|+|+||+|||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 85 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-----------LRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENL 85 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeccccccccEEEEcCCCCccccC
Confidence 445667899999999999999999999999998 679999999998754321 12344544 222233
Q ss_pred EEEecccccccccC-CCCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHH
Q 016139 91 EIHDIAGLVRGAHE-GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (394)
Q Consensus 91 ~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el 154 (394)
++.|..-+...... .......+++.++.. -..+.+++++ .+|+++++| ||++++|....+.
T Consensus 86 t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD---EP~~~LD~~~~~~ 162 (223)
T TIGR03740 86 TARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD---EPTNGLDPIGIQE 162 (223)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccCCCHHHHHH
Confidence 44443322110000 000000111111000 0115567777 899999999 9999999998755
Q ss_pred HHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 155 ~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
....+..+. .-...+.. .+|+...+..+|+++ ..|.+|++...++..
T Consensus 163 l~~~L~~~~----~~~~tiii-~sH~~~~~~~~~d~i-~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 163 LRELIRSFP----EQGITVIL-SSHILSEVQQLADHI-GIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHH----HCCCEEEE-EcCCHHHHHHhcCEE-EEEeCCEEEEecChh
Confidence 544332221 10112212 239999999999999 888999987766543
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=4.9e-15 Score=141.18 Aligned_cols=172 Identities=15% Similarity=0.250 Sum_probs=107.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~ 86 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-----------QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPA 96 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCC
Confidence 455677899999999999999999999999999 6799999999997653211 1355554 22
Q ss_pred ccceEEEecccccccccCC------CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAHEG------QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~------~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...+++.|...+....... .. .....+..+...+ .-+.+++++ .+|+++++| |
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD---E 173 (265)
T PRK10575 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD---E 173 (265)
T ss_pred CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 2333444433221100000 00 0001111111101 015566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+.........+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 174 Pt~~LD~~~~~~~~~~l~~l~~---~~~~tiii-~sH~~~~i~~~~d~i-~~l~~G~i~~~~~ 231 (265)
T PRK10575 174 PTSALDIAHQVDVLALVHRLSQ---ERGLTVIA-VLHDINMAARYCDYL-VALRGGEMIAQGT 231 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 9999999987555444332211 11112212 239999999999999 8899999876654
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=7.5e-15 Score=137.96 Aligned_cols=172 Identities=17% Similarity=0.289 Sum_probs=108.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~ 86 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||. ..
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGL 86 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCeEcCcCChHHhhcceEEEccCccc
Confidence 456678899999999999999999999999999 6799999999987653211 1355655 23
Q ss_pred ccceEEEecccccccccC-C----CCCchhhhhHHHhh-----h-----------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 87 PAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV-----D-----------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~-----d-----------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
....++.+...+...... . ......+++.+... + .-+.+++++ .+|+++++| ||+
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 163 (242)
T cd03295 87 FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD---EPF 163 (242)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCc
Confidence 333455554433211000 0 00000111111111 0 115567777 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++|....+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~---~~g~tvii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 219 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQ---ELGKTIVF-VTHDIDEAFRLADRI-AIMKNGEIVQVGT 219 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHH---HcCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999886554443322211 10112212 249999999999999 8899999876553
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.50 E-value=6.3e-15 Score=139.94 Aligned_cols=172 Identities=16% Similarity=0.260 Sum_probs=107.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~-~~ 86 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++. ..
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-----------LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcC
Confidence 455678899999999999999999999999999 679999999998754321 1 1355555 22
Q ss_pred ccceEEEecccccccccCC-----CCCchhhhhHHHhhh--------------hHHhhhhccC-------CCCeEEecCC
Q 016139 87 PAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVD--------------GIFHVLRAFE-------DPDIIHVDDS 140 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~-----~~l~~~~l~~l~~~d--------------~il~vv~a~~-------~~~vl~ld~~ 140 (394)
+...++.|...+....... ......+++.++..+ --+.+++++- +|+++++|
T Consensus 88 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD-- 165 (258)
T PRK13548 88 SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD-- 165 (258)
T ss_pred CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe--
Confidence 2334455543322110000 000011111111111 1155667764 89999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 166 -EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (258)
T PRK13548 166 -EPTSALDLAHQHHVLRLARQLAH---ERGLAVIV-VLHDLNLAARYADRI-VLLHQGRLVADGT 224 (258)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EECCHHHHHHhcCEE-EEEECCEEEeeCC
Confidence 99999999987655444332211 11112212 239999999999999 8889999876654
No 123
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=6.6e-15 Score=138.34 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||....
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~ 88 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-----------IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHL 88 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchh
Confidence 556778899999999999999999999999999 6799999999997653211 1355554211
Q ss_pred cceEEEecccccccccCC-CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~-~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
...++.+...+....... ......+++.+... -..+.+++++ .+|+++++| ||++++|..
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~ 165 (241)
T PRK14250 89 FEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD---EPTSALDPT 165 (241)
T ss_pred chhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 112333332221100000 00000111111110 0114566776 899999999 999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 166 ~~~~l~~~l~~~~~---~~g~tii~-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (241)
T PRK14250 166 STEIIEELIVKLKN---KMNLTVIW-ITHNMEQAKRIGDYT-AFLNKGILVEYAK 215 (241)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEE-EeccHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 86555443332211 11112212 249999999999999 8899998876543
No 124
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=5.2e-15 Score=138.19 Aligned_cols=171 Identities=14% Similarity=0.166 Sum_probs=107.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----hhhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~~~~~~~~-~~~~~ 89 (394)
.....+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+. ..+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 85 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF-----------LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSH 85 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCeecCcCChhhccEEEEecccccccC
Confidence 56778899999999999999999999999999 679999999998765321 12355554 22333
Q ss_pred eEEEeccccccccc-C-CC---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 90 LEIHDIAGLVRGAH-E-GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 90 i~~~D~~gl~~~~~-~-~~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
+++.|...+..... . .. .....+++.+.... .-+.+++++ .+|+++++| ||++++|.
T Consensus 86 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD~ 162 (232)
T PRK10771 86 LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD---EPFSALDP 162 (232)
T ss_pred CcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCH
Confidence 44444432211000 0 00 00011111111111 115566776 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.........+..+.+ .....+.. .+|+...+..+|+++ .+|.+|++...++
T Consensus 163 ~~~~~~~~~l~~~~~---~~~~tiii-~sH~~~~~~~~~d~i-~~l~~g~i~~~g~ 213 (232)
T PRK10771 163 ALRQEMLTLVSQVCQ---ERQLTLLM-VSHSLEDAARIAPRS-LVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 986544433322211 11112212 249999999999999 8889999876654
No 125
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=3.6e-15 Score=143.77 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=109.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------h--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~~~~~ 85 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-----------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEECCEECCCcCccHHHHhhceEEEecCc
Confidence 455678899999999999999999999999999 679999999999776421 1 14666652
Q ss_pred --cccceEEEecccccccccC--CCCC---chhhhhHHHhh--h--------------hHHhhhhcc-CCCCeEEecCCC
Q 016139 86 --VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAV--D--------------GIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~~--~~~l---~~~~l~~l~~~--d--------------~il~vv~a~-~~~~vl~ld~~~ 141 (394)
.....++.|...+...... .... ....++.++.. + --+.+++|+ .+|+++++|
T Consensus 93 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD--- 169 (287)
T PRK13637 93 EYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD--- 169 (287)
T ss_pred hhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 1122344444332211000 0000 00111111110 0 114566776 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|+.....+...+..+.+ .....+ .-.+|++..+..+||++ .+|++|+++..++.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~---~~g~tv-i~vtHd~~~~~~~~drv-~~l~~G~i~~~g~~ 229 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHK---EYNMTI-ILVSHSMEDVAKLADRI-IVMNKGKCELQGTP 229 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999987555444332211 111222 22249999999999999 89999999877653
No 126
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.50 E-value=3.4e-14 Score=125.63 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=93.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+.+|++++|+|+||+|||||+++|+|. ..|++|.|.++|.++..... .......+-++
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~----~~~~~~~i~~~- 80 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFASP----RDARRAGIAMV- 80 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcCCH----HHHHhcCeEEE-
Confidence 445567899999999999999999999999999 67999999999865432110 00000001111
Q ss_pred cccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 016139 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (394)
.. .+.|++ +.+..+-+++ .+|+++++| ||++++|....+.....+..+.+ -...+.
T Consensus 81 -----~q----LS~G~~--qrl~laral~------~~p~illlD---EP~~~LD~~~~~~l~~~l~~~~~----~~~tii 136 (163)
T cd03216 81 -----YQ----LSVGER--QMVEIARALA------RNARLLILD---EPTAALTPAEVERLFKVIRRLRA----QGVAVI 136 (163)
T ss_pred -----Ee----cCHHHH--HHHHHHHHHh------cCCCEEEEE---CCCcCCCHHHHHHHHHHHHHHHH----CCCEEE
Confidence 00 111222 3333333333 599999999 99999999987555444322211 011121
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 175 RSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 175 ~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
. .+|+...+..+|+++ ..|++|++.
T Consensus 137 i-~sh~~~~~~~~~d~~-~~l~~g~i~ 161 (163)
T cd03216 137 F-ISHRLDEVFEIADRV-TVLRDGRVV 161 (163)
T ss_pred E-EeCCHHHHHHhCCEE-EEEECCEEE
Confidence 2 239999999999999 777888764
No 127
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=5.6e-15 Score=142.17 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=110.5
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS 84 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~ 84 (394)
-......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.||.
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~ 90 (283)
T PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQD 90 (283)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCccEEEECCEECCCCcchHHHHHhhEEEEecC
Confidence 3456678899999999999999999999999999 67999999999976521 11 1466665
Q ss_pred c--cccceEEEecccccccccC-C-CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 A--VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 ~--~~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. .....++.|...+...... . .. .....++.++..+ --+.+++|+ .+|+++++| |
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD---E 167 (283)
T PRK13636 91 PDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD---E 167 (283)
T ss_pred cchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 3 1123344554432110000 0 00 0000111111100 015567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|++++|+.........+..+.+ .....+... +|+++.+..+|+++ .+|++|+++..++.+
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillv-sH~~~~~~~~~dri-~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQK---ELGLTIIIA-THDIDIVPLYCDNV-FVMKEGRVILQGNPK 227 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHH---hCCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 9999999987555444332211 111122122 39999999999999 899999998877643
No 128
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.50 E-value=2.5e-14 Score=131.58 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=101.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.|+..
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 85 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----------EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQF 85 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccchhHHHHHhcceEEeccc
Confidence 455678899999999999999999999999999 67999999999876521 11 13556552
Q ss_pred -cccceEEEecccccc----cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 -VPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 -~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.....++.|...+.. ..... ......+++.+.... ..+.+++++ .+|+++++| ||
T Consensus 86 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP 162 (213)
T cd03262 86 NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD---EP 162 (213)
T ss_pred ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 233345555443221 00000 000001111111000 115567777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
++++|....+.....+..+.+ -...+.. .+|+...+..+|+++ .+|++|+
T Consensus 163 ~~~LD~~~~~~l~~~l~~~~~----~~~tvi~-~sh~~~~~~~~~d~i-~~l~~g~ 212 (213)
T cd03262 163 TSALDPELVGEVLDVMKDLAE----EGMTMVV-VTHEMGFAREVADRV-IFMDDGR 212 (213)
T ss_pred ccCCCHHHHHHHHHHHHHHHH----cCCEEEE-EeCCHHHHHHhCCEE-EEEeCCc
Confidence 999999886555443332211 1112212 239999999999998 6777765
No 129
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.50 E-value=1.2e-14 Score=138.45 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=108.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 96 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-----------EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD 96 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEccccCHHHHHHHhhceEEEecC
Confidence 456678899999999999999999999999999 679999999998765321 1 2455555
Q ss_pred c---cccceEEEecccccc----cccCC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecC
Q 016139 85 A---VPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
. ++...++.|...+.. ..... ......+++.+... -..+.+++++ .+|+++++|
T Consensus 97 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD- 175 (265)
T TIGR02769 97 SPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD- 175 (265)
T ss_pred hhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 2 233344444332110 00000 00001111111110 0115567776 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 176 --EPt~~LD~~~~~~l~~~l~~~~~---~~g~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (265)
T TIGR02769 176 --EAVSNLDMVLQAVILELLRKLQQ---AFGTAYLF-ITHDLRLVQSFCQRV-AVMDKGQIVEECD 234 (265)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hcCcEEEE-EeCCHHHHHHHhcEE-EEEeCCEEEEECC
Confidence 99999999886555444322211 11122212 239999999999999 8889999887655
No 130
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.50 E-value=9.6e-15 Score=138.43 Aligned_cols=171 Identities=20% Similarity=0.297 Sum_probs=108.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-V 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-~ 86 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+.. .
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-----------LRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT 86 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEEcccCCHHHHhhheEEecccCcc
Confidence 455677899999999999999999999999999 679999999999765321 1 24666652 2
Q ss_pred ccceEEEeccccccccc------CCCC---CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAH------EGQG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~------~~~~---l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
....++.|...+..... .... ....++..+...+. .+.+++++ .+|+++++| |
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---E 163 (256)
T TIGR03873 87 AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD---E 163 (256)
T ss_pred CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 33344444432211000 0000 00111111111111 15567777 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|..........+..+.+ -...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (256)
T TIGR03873 164 PTNHLDVRAQLETLALVRELAA----TGVTVVA-ALHDLNLAASYCDHV-VVLDGGRVVAAGP 220 (256)
T ss_pred ccccCCHHHHHHHHHHHHHHHh----cCCEEEE-EeCCHHHHHHhCCEE-EEEeCCCEEEecC
Confidence 9999999886554443322211 1112212 239999999999999 8899999887664
No 131
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.49 E-value=2.8e-14 Score=134.59 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=106.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------------hh--hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LC--QL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------------l~--~~ 79 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-----------EQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccccccchhhHHHHhhhhEE
Confidence 455677899999999999999999999999999 67899999998876531 11 13
Q ss_pred ccCCC-ccccceEEEecccccc----cccCC--CCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEe
Q 016139 80 FKPKS-AVPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~l 137 (394)
|.||. ......++.|...+.. ..... ......+++.++.. -..+.+++++ .+|+++++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 55554 2222344444432210 00000 00000111111000 0115566776 89999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
| ||++++|....+.+...+..+. .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 169 D---EPt~~LD~~~~~~l~~~l~~~~----~~~~tvi~-~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 227 (250)
T PRK11264 169 D---EPTSALDPELVGEVLNTIRQLA----QEKRTMVI-VTHEMSFARDVADRA-IFMDQGRIVEQGP 227 (250)
T ss_pred e---CCCccCCHHHHHHHHHHHHHHH----hcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9 9999999998755544332221 11112212 249999999999999 8889999876654
No 132
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.49 E-value=2.8e-14 Score=129.77 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=100.5
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc--CCceeEEecCCcchhhh--h--hhccCCC-c
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWL--C--QLFKPKS-A 85 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~--~p~~G~i~v~g~~~~~l--~--~~~~~~~-~ 85 (394)
.-......+.+|++++|+|+||||||||+++|+|. . .|++|.|.++|+++... . ..|.++. .
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 92 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR-----------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDI 92 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCceEEEECCEeCchHhhhheEEEccCccc
Confidence 34566788899999999999999999999999999 5 68999999999865421 1 1244443 1
Q ss_pred cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHH
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k 164 (394)
.+..+++.|...+..... ..+.|++ ++ +.+++++ .+|+++++| ||++++|....+.....+..+.
T Consensus 93 ~~~~~t~~~~i~~~~~~~-~LS~G~~--qr-------v~laral~~~p~illlD---EP~~~LD~~~~~~l~~~l~~~~- 158 (194)
T cd03213 93 LHPTLTVRETLMFAAKLR-GLSGGER--KR-------VSIALELVSNPSLLFLD---EPTSGLDSSSALQVMSLLRRLA- 158 (194)
T ss_pred CCCCCcHHHHHHHHHHhc-cCCHHHH--HH-------HHHHHHHHcCCCEEEEe---CCCcCCCHHHHHHHHHHHHHHH-
Confidence 222233333322211000 0111111 22 3445555 699999999 9999999988655444332211
Q ss_pred HHHHHHHhhhcccchhhH-HHHHHHHHHHHHhcCCCcee
Q 016139 165 RIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 165 ~l~~~~~~~~~~~~h~~~-~~~~l~~ri~~~L~~g~~~~ 202 (394)
.+ ...+.. .+|+.. .+..+||++ .+|++|++..
T Consensus 159 --~~-~~tiii-~sh~~~~~~~~~~d~v-~~l~~G~i~~ 192 (194)
T cd03213 159 --DT-GRTIIC-SIHQPSSEIFELFDKL-LLLSQGRVIY 192 (194)
T ss_pred --hC-CCEEEE-EecCchHHHHHhcCEE-EEEeCCEEEe
Confidence 10 112212 238886 678899999 8888887654
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.49 E-value=5.9e-15 Score=139.50 Aligned_cols=172 Identities=17% Similarity=0.222 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------------------
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------------ 76 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------------------ 76 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-----------EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccccccchhHHHHH
Confidence 345677899999999999999999999999999 679999999998765321
Q ss_pred h--hhccCCC-ccccceEEEecccccc----cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCC
Q 016139 77 C--QLFKPKS-AVPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDP 132 (394)
Q Consensus 77 ~--~~~~~~~-~~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~ 132 (394)
. ..|.+|. ......++.|...+.. +.... ......+++.+...+ ..+.+++++ .+|
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCC
Confidence 1 1344444 2222344444332210 00000 000001111111000 115567777 899
Q ss_pred CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 133 ~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++++| ||++++|+.........+..+.+ +....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 166 ~llllD---EP~~~LD~~~~~~l~~~l~~~~~---~~~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T TIGR03005 166 KVMLFD---EVTSALDPELVGEVLNVIRRLAS---EHDLTMLL-VTHEMGFAREFADRV-CFFDKGRIVEQGK 230 (252)
T ss_pred CEEEEe---CCcccCCHHHHHHHHHHHHHHHH---hcCcEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999 99999999886554433322211 11112212 239999999999999 8899999876654
No 134
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=5.7e-15 Score=138.00 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=104.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......++.|++++|+|+||||||||+++|+|. ..|++|.|.++|+++... ...|.||
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 94 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ 94 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEec
Confidence 456678899999999999999999999999999 679999999999765321 1135565
Q ss_pred C-ccccceEEEecccccc---cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~---~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+..+++.+...+.. ..... ......+++.++..+ ..+.+++++ .+|+++++| |
T Consensus 95 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---E 171 (233)
T PRK11629 95 FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD---E 171 (233)
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 5 2233334444433210 00000 000011111111100 114566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+.+ .-...+.. .+|+.+.+..+ +++ .+|++|+++..+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~---~~g~tvii-~sH~~~~~~~~-~~~-~~l~~G~i~~~~~ 228 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNR---LQGTAFLV-VTHDLQLAKRM-SRQ-LEMRDGRLTAELS 228 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---hCCCEEEE-EeCCHHHHHhh-CEE-EEEECCEEEEEec
Confidence 9999999987555443322211 00112212 23999888775 577 6788898876544
No 135
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=6.4e-14 Score=125.96 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=117.8
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------hh--hccCC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQ--LFKPK 83 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~--~~~~~ 83 (394)
.-+.....|+++.+.+||||+|||||||+++|..+.-. +|.+ ...|.|.+.|+++..- .. ....|
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl---~~~~---r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL---IPGA---RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhccc---CcCc---eEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 33566778899999999999999999999999988431 1111 2459999998875321 11 34557
Q ss_pred CccccceEEEecccccccccCCCC--CchhhhhHHHhhhhH---------------------Hhhhhcc-CCCCeEEecC
Q 016139 84 SAVPAFLEIHDIAGLVRGAHEGQG--LGNSFLSHIRAVDGI---------------------FHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 84 ~~~~~~i~~~D~~gl~~~~~~~~~--l~~~~l~~l~~~d~i---------------------l~vv~a~-~~~~vl~ld~ 139 (394)
+..|+.+++.|+..++...+.... +.....+.++.+.+. +.++||+ -+|+|+++|
T Consensus 96 kPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmD- 174 (253)
T COG1117 96 KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD- 174 (253)
T ss_pred CCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEec-
Confidence 766777999999888755443221 111122223332221 6788888 789999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~-~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.||++...-+ ++.+..+++.. ..-.+|+|....++-|+. .++..|+++-.++
T Consensus 175 --EPtSALDPIsT~kI-------EeLi~eLk~~yTIviVTHnmqQAaRvSD~t-aFf~~G~LvE~g~ 231 (253)
T COG1117 175 --EPTSALDPISTLKI-------EELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGP 231 (253)
T ss_pred --CcccccCchhHHHH-------HHHHHHHHhccEEEEEeCCHHHHHHHhHhh-hhhcccEEEEEcC
Confidence 99999999985332 22222222211 012249999999999999 8888898886654
No 136
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.2e-14 Score=134.11 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=103.6
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh---------hh--hhccCCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKPKS 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~~~~ 84 (394)
.....+.+ ++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL-----------EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 56677889 99999999999999999999999 67999999999876431 11 1355554
Q ss_pred -ccccceEEEecccccccccC---CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~---~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
..+...++.|...+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~ 160 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD---EPFS 160 (214)
T ss_pred CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 22333444444322111000 0000011111111111 115566776 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
++|....+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++.
T Consensus 161 ~LD~~~~~~l~~~l~~~~~---~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~ 212 (214)
T cd03297 161 ALDRALRLQLLPELKQIKK---NLNIPVIF-VTHDLSEAEYLADRI-VVMEDGRLQY 212 (214)
T ss_pred cCCHHHHHHHHHHHHHHHH---HcCcEEEE-EecCHHHHHHhcCEE-EEEECCEEEe
Confidence 9999987555444332211 11112212 239999999999999 8888888654
No 137
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.49 E-value=9.1e-15 Score=139.37 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=107.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------hhhccCCCc-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPKSA-V 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~~~~~~~~~-~ 86 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.||.. .
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 92 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-----------MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcC
Confidence 455678899999999999999999999999999 678999999998765321 124556552 2
Q ss_pred ccceEEEecccccccccC------CC---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAHE------GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~------~~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
+...++.|...+...... .. .....+++.++..+ --+.+++|+ .+|+++++| |
T Consensus 93 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---E 169 (265)
T PRK10253 93 PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD---E 169 (265)
T ss_pred CCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 223344443322100000 00 00001111111100 115566777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.....+..+.+ .....+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 170 Pt~gLD~~~~~~l~~~L~~l~~---~~~~tiii-~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (265)
T PRK10253 170 PTTWLDISHQIDLLELLSELNR---EKGYTLAA-VLHDLNQACRYASHL-IALREGKIVAQGA 227 (265)
T ss_pred ccccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999987555443322211 00112212 239999999999999 8889999887654
No 138
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.49 E-value=3.8e-15 Score=148.44 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=110.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc----chhh-----h------hhh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE----RFEW-----L------CQL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~----~~~~-----l------~~~ 79 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|+ ++.. + ...
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-----------~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-----------NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 556678899999999999999999999999999 6799999999985 2211 1 123
Q ss_pred ccCCC-ccccceEEEeccccccccc---CC--CCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEec
Q 016139 80 FKPKS-AVPAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~gl~~~~~---~~--~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld 138 (394)
|.+|. ..+...++.|+..+..... .. ......+++.+... -.-+.+++++ .+|+++++|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 55555 3333456666654431100 00 00000111111110 0115677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|+.........+..+.+ .....+... +|+++++.++|+++ .+|++|+++..++.
T Consensus 190 ---EPts~LD~~~r~~l~~~L~~l~~---~~~~TII~i-THdl~e~~~l~DrI-~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 190 ---EPFSALDPLIRTQLQDELLELQA---KLNKTIIFV-SHDLDEALKIGNRI-AIMEGGRIIQHGTP 249 (382)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 99999999987554443322211 111222222 39999999999999 99999999877653
No 139
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.49 E-value=1.4e-14 Score=133.28 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=101.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
.....++.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|.
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 86 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-----------ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD 86 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHHHheEEEecC
Confidence 455678899999999999999999999999999 679999999998765321 1 1355555
Q ss_pred -ccccceEEEecccccccccC--CCCC---chhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~--~~~l---~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
..+...++.|...+...... .... ....++.+... -..+.+++++ .+|+++++| ||
T Consensus 87 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 163 (214)
T cd03292 87 FRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD---EP 163 (214)
T ss_pred chhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 23333444444332210000 0000 00111111000 0115567777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
++++|+...+.....+..+.+ -...+ .-.+|+...+..+|+++ .+|++|+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~----~~~ti-iivtH~~~~~~~~~d~i-~~l~~G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINK----AGTTV-VVATHAKELVDTTRHRV-IALERGK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHH----cCCEE-EEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 999999987554443322211 01122 12239999999999988 6777765
No 140
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=8.5e-15 Score=138.84 Aligned_cols=171 Identities=13% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCC-ccccceE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLE 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~-~~~~~i~ 91 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+...+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-----------VPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRN 86 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCc
Confidence 456678899999999999999999999999999 6799999999987653211 2344544 2222234
Q ss_pred EEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 92 IHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 92 ~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
+.+...+...... . . .....+++.+...+ .-+.+++++ .+|+++++| ||++++|+..
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~~~ 163 (255)
T PRK11248 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD---EPFGALDAFT 163 (255)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHHH
Confidence 4443322110000 0 0 00001111111000 115566776 799999999 9999999998
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc--CCCceecC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRLG 204 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~--~g~~~~~~ 204 (394)
...+...+..+. ..-...+.. .+|+...+..+|+++ .+|+ +|+++...
T Consensus 164 ~~~l~~~L~~~~---~~~g~tvii-vsH~~~~~~~~~d~i-~~l~~~~G~i~~~~ 213 (255)
T PRK11248 164 REQMQTLLLKLW---QETGKQVLL-ITHDIEEAVFMATEL-VLLSPGPGRVVERL 213 (255)
T ss_pred HHHHHHHHHHHH---HhcCCEEEE-EeCCHHHHHHhCCEE-EEEeCCCcEEEEEe
Confidence 755544332221 111112212 249999999999998 7776 47776554
No 141
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.49 E-value=1.2e-14 Score=137.91 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=107.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------------------h
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------------L 76 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------------------l 76 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLL 90 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccccccccccccchHHHHH
Confidence 456677899999999999999999999999999 67899999999876531 0
Q ss_pred h--hhccCCCc-cccceEEEecccccc----cccCC--CCCchhhhhHHHhhh---------------hHHhhhhcc-CC
Q 016139 77 C--QLFKPKSA-VPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAVD---------------GIFHVLRAF-ED 131 (394)
Q Consensus 77 ~--~~~~~~~~-~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~~d---------------~il~vv~a~-~~ 131 (394)
. ..|.||.. ....+++.|...+.. ..... ......+++.+...+ ..+.+++++ .+
T Consensus 91 ~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (257)
T PRK10619 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170 (257)
T ss_pred hhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1 13555542 222344444432210 00000 000001111111100 125567777 89
Q ss_pred CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+++++| ||++++|+...+.+...+..+ .+....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 171 p~llllD---EPt~~LD~~~~~~l~~~l~~l----~~~g~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 235 (257)
T PRK10619 171 PEVLLFD---EPTSALDPELVGEVLRIMQQL----AEEGKTMVV-VTHEMGFARHVSSHV-IFLHQGKIEEEGA 235 (257)
T ss_pred CCEEEEe---CCcccCCHHHHHHHHHHHHHH----HhcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999999 999999999875544332221 111122212 239999999999999 8899999887654
No 142
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.49 E-value=1e-14 Score=137.45 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=107.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----eeEEecCCcchhhh-------h--hhc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEWL-------C--QLF 80 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-----~G~i~v~g~~~~~l-------~--~~~ 80 (394)
......+++|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... . ..|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 86 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-----------NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGM 86 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceEEEECCEEccccccchHHHHhheEE
Confidence 556778899999999999999999999999999 5566 99999998765321 1 145
Q ss_pred cCCCccccceEEEecccccccccC---CCC---CchhhhhHHHhh----h--------------hHHhhhhcc-CCCCeE
Q 016139 81 KPKSAVPAFLEIHDIAGLVRGAHE---GQG---LGNSFLSHIRAV----D--------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 81 ~~~~~~~~~i~~~D~~gl~~~~~~---~~~---l~~~~l~~l~~~----d--------------~il~vv~a~-~~~~vl 135 (394)
.||.......++.|...+...... ... .....++.+... + -.+.+++++ .+|+++
T Consensus 87 v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 166 (247)
T TIGR00972 87 VFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVL 166 (247)
T ss_pred EecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 565521111444443322110000 000 000011111100 0 114566777 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++++|..........+..+.+ . ..+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 167 llD---EPt~~LD~~~~~~l~~~l~~~~~---~--~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (247)
T TIGR00972 167 LLD---EPTSALDPIATGKIEELIQELKK---K--YTIVI-VTHNMQQAARISDRT-AFFYDGELVEYGP 226 (247)
T ss_pred EEe---CCcccCCHHHHHHHHHHHHHHHh---c--CeEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999 99999999987665554433221 1 12212 249999999999999 8899999876654
No 143
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.48 E-value=8e-15 Score=135.75 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=101.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----------h-hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------C-QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~-~~~~~~ 83 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 90 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-----------DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQ 90 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEec
Confidence 455678899999999999999999999999999 679999999998765321 1 245566
Q ss_pred C-ccccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+...++.|...+...... . ......+++.++..+ -.+.+++++ .+|+++++| |
T Consensus 91 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---E 167 (221)
T TIGR02211 91 FHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD---E 167 (221)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---C
Confidence 5 23334455554433110000 0 000001111111000 115566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
|++++|....+.....+..+.+ .....+.. .+|+...+.. ||++ ..|++|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~tH~~~~~~~-~d~v-~~l~~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNR---ELNTSFLV-VTHDLELAKK-LDRV-LEMKDGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHhh-cCEE-EEEeCCEec
Confidence 9999999987555444322211 11112212 2399887754 7888 777777653
No 144
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.48 E-value=2.1e-14 Score=128.72 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCCcccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSAVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~~~~~ 88 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++.....
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 87 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLF 87 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeee
Confidence 456678899999999999999999999999999 6789999999998664321 12444432111
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHH
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~ 168 (394)
..++.|.. ....+.|++ +.+..+-+++ .+|+++++| ||++++|....+.....+..+ .+
T Consensus 88 ~~tv~~~i------~~~LS~G~~--qrv~laral~------~~p~~lllD---EP~~~LD~~~~~~l~~~l~~~----~~ 146 (178)
T cd03247 88 DTTLRNNL------GRRFSGGER--QRLALARILL------QDAPIVLLD---EPTVGLDPITERQLLSLIFEV----LK 146 (178)
T ss_pred cccHHHhh------cccCCHHHH--HHHHHHHHHh------cCCCEEEEE---CCcccCCHHHHHHHHHHHHHH----cC
Confidence 12222221 011111222 3333333333 599999999 999999998865554433222 11
Q ss_pred HHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 169 ~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
...+.. .+|+...+. .|+++ ..|++|++..
T Consensus 147 -~~tii~-~sh~~~~~~-~~d~~-~~l~~g~i~~ 176 (178)
T cd03247 147 -DKTLIW-ITHHLTGIE-HMDKI-LFLENGKIIM 176 (178)
T ss_pred -CCEEEE-EecCHHHHH-hCCEE-EEEECCEEEe
Confidence 111212 238888875 68888 7778887653
No 145
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=4.3e-14 Score=126.16 Aligned_cols=148 Identities=19% Similarity=0.320 Sum_probs=92.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCCc-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSA-VP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~~-~~ 87 (394)
......+.+|+.++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. ..
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccchHhhhccEEEEecCCccc
Confidence 456678899999999999999999999999999 5689999999987653211 01223221 11
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l 166 (394)
...++.|... .+.|++ ++ +.+++++ .+|+++++| ||++++|..........+..+.+
T Consensus 86 ~~~tv~~~~~--------LS~G~~--qr-------v~laral~~~p~illlD---EPt~~LD~~~~~~l~~~l~~~~~-- 143 (173)
T cd03230 86 ENLTVRENLK--------LSGGMK--QR-------LALAQALLHDPELLILD---EPTSGLDPESRREFWELLRELKK-- 143 (173)
T ss_pred cCCcHHHHhh--------cCHHHH--HH-------HHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHHHHHHHHHH--
Confidence 1111111110 011111 22 3445555 699999999 99999999986554443322211
Q ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 167 EDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 167 ~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
+ ...+.. .+|+...+..+|+++ ..|++|+
T Consensus 144 -~-g~tiii-~th~~~~~~~~~d~i-~~l~~g~ 172 (173)
T cd03230 144 -E-GKTILL-SSHILEEAERLCDRV-AILNNGR 172 (173)
T ss_pred -C-CCEEEE-ECCCHHHHHHhCCEE-EEEeCCC
Confidence 1 111212 239998888899988 6666664
No 146
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.2e-14 Score=140.17 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=109.2
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh---------hh--hhcc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFK 81 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~ 81 (394)
.-......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 89 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-----------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccccHHHHHhhEEEE
Confidence 34677788999999999999999999999999999 67999999999976531 11 1355
Q ss_pred CCCc--cccceEEEecccccccccC-C-CC---CchhhhhHHHhhh---------------hHHhhhhcc-CCCCeEEec
Q 016139 82 PKSA--VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 82 ~~~~--~~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d---------------~il~vv~a~-~~~~vl~ld 138 (394)
+|.. .....++.|...+...... . .. .....+..+...+ -.+.+++++ .+|+++++|
T Consensus 90 ~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD 169 (288)
T PRK13643 90 FQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169 (288)
T ss_pred ecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5542 1111244444333211100 0 00 0001111111100 014566666 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|+.....+...+..+ ......+ .-.+|++..+..+||++ .+|.+|+++..++.
T Consensus 170 ---EPt~gLD~~~~~~l~~~l~~l----~~~g~ti-l~vtHd~~~~~~~~dri-~~l~~G~i~~~g~~ 228 (288)
T PRK13643 170 ---EPTAGLDPKARIEMMQLFESI----HQSGQTV-VLVTHLMDDVADYADYV-YLLEKGHIISCGTP 228 (288)
T ss_pred ---CCccCCCHHHHHHHHHHHHHH----HHCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999999998865444332221 1111222 22249999999999999 99999999887754
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=7.8e-15 Score=140.92 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=106.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~-- 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|..
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 92 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-----------LEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDN 92 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHH
Confidence 455678899999999999999999999999999 6799999999998764211 13555542
Q ss_pred cccceEEEecccccccccC-CC----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.....++.|...+...... .. ......++.++..+ ..+.+++|+ .+|+++++| ||++
T Consensus 93 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EPt~ 169 (279)
T PRK13650 93 QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD---EATS 169 (279)
T ss_pred hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CCcc
Confidence 2223344454433211000 00 00001111111110 115567777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++|+.....+...+..+.+ .....+.. .+|++..+ ..|+++ .+|++|+++..++
T Consensus 170 ~LD~~~~~~l~~~l~~l~~---~~g~tili-vtH~~~~~-~~~dri-~~l~~G~i~~~g~ 223 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRD---DYQMTVIS-ITHDLDEV-ALSDRV-LVMKNGQVESTST 223 (279)
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHH-HhCCEE-EEEECCEEEEECC
Confidence 9999986554443322211 11122212 24999888 479999 8889999887765
No 148
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=4.1e-14 Score=132.88 Aligned_cols=171 Identities=18% Similarity=0.238 Sum_probs=105.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh-----------hh--hhhcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WL--CQLFK 81 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-----------~l--~~~~~ 81 (394)
.....++.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++. .. ...|.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 87 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMV 87 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecccccccchhhHHHHHhheEEE
Confidence 455677899999999999999999999999999 6799999999987642 01 11455
Q ss_pred CCCc-cccceEEEecccccc----cccCC--CCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecC
Q 016139 82 PKSA-VPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 82 ~~~~-~~~~i~~~D~~gl~~----~~~~~--~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~ 139 (394)
||.. .+..+++.+...... +.... ......+++.+.. --..+.+++++ .+|+++++|
T Consensus 88 ~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD- 166 (242)
T PRK11124 88 FQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD- 166 (242)
T ss_pred ecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 5542 222334444322100 00000 0000001111100 00115567777 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.....+..+. .-...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 167 --EPt~~LD~~~~~~l~~~l~~~~----~~~~tii~-~sh~~~~~~~~~d~i-~~l~~g~i~~~~~ 224 (242)
T PRK11124 167 --EPTAALDPEITAQIVSIIRELA----ETGITQVI-VTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred --CCCCcCCHHHHHHHHHHHHHHH----HcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999999988655444332221 11112212 239999999999999 8889999876654
No 149
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=3.5e-14 Score=134.28 Aligned_cols=173 Identities=19% Similarity=0.238 Sum_probs=111.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----------hccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~~~ 83 (394)
......++.|+++.|.|.+|||||||+++|.++ ++|++|.|.++|.++..++. ....|
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ 113 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ 113 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh
Confidence 345667899999999999999999999999999 89999999999988754332 11122
Q ss_pred C-ccccceEEEecccccccccC---C--CCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~---~--~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
+ ...++.++.|+.+++-.... . +......++.+.. ..--+-++||+ .+|+++++| |
T Consensus 114 ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD---E 190 (386)
T COG4175 114 SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD---E 190 (386)
T ss_pred hhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec---C
Confidence 2 23334556666655422111 0 0000011111100 01114567787 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.||++-+-....-+-.+++ ++.+++-.- +|++++..++-+|| .+|++|+++..|+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~---~l~KTIvFi-tHDLdEAlriG~rI-aimkdG~ivQ~Gtp 249 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQA---KLKKTIVFI-THDLDEALRIGDRI-AIMKDGEIVQVGTP 249 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHH---HhCCeEEEE-ecCHHHHHhccceE-EEecCCeEEEeCCH
Confidence 9999998764322222222222 333343222 39999999999999 99999999988864
No 150
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.1e-14 Score=127.96 Aligned_cols=144 Identities=23% Similarity=0.326 Sum_probs=90.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.+.++|..+.... ..|.++....
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 87 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL 87 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh
Confidence 455678899999999999999999999999999 6689999999997654321 1233332111
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l 166 (394)
...++.|.. .+.|++ +++ .+++++ .+|+++++| ||++++|....+.....+..+.
T Consensus 88 ~~~t~~e~l---------LS~G~~--~rl-------~la~al~~~p~llllD---EP~~gLD~~~~~~l~~~l~~~~--- 143 (171)
T cd03228 88 FSGTIRENI---------LSGGQR--QRI-------AIARALLRDPPILILD---EATSALDPETEALILEALRALA--- 143 (171)
T ss_pred ccchHHHHh---------hCHHHH--HHH-------HHHHHHhcCCCEEEEE---CCCcCCCHHHHHHHHHHHHHhc---
Confidence 011111111 111111 222 344444 599999999 9999999988655444332221
Q ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 167 EDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 167 ~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+ ...+... +|+...+.. |+++ ..|.+|
T Consensus 144 -~-~~tii~~-sh~~~~~~~-~d~~-~~l~~g 170 (171)
T cd03228 144 -K-GKTVIVI-AHRLSTIRD-ADRI-IVLDDG 170 (171)
T ss_pred -C-CCEEEEE-ecCHHHHHh-CCEE-EEEcCC
Confidence 1 1122122 388888876 8887 555555
No 151
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.48 E-value=2.5e-14 Score=132.91 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=100.4
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCCc-cc--cceEEEe
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP--AFLEIHD 94 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~~-~~--~~i~~~D 94 (394)
.+++|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.|+.. .. ...++.|
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 70 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL-----------IPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAH 70 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHH
Confidence 4788999999999999999999999998 6799999999997653222 24555542 11 1123333
Q ss_pred ccccccc----cc-CCC----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 95 IAGLVRG----AH-EGQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 95 ~~gl~~~----~~-~~~----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
+..+... .. ... ......++.+...+ .-+.+++++ .+|+++++| ||++++|+.
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EP~~~LD~~ 147 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD---EPFTGLDMP 147 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 3211100 00 000 00001111111000 115566776 899999999 999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..+.+...+..+. ++ ...+.. .+|+...+..+|+++ .++ +|+++..++
T Consensus 148 ~~~~l~~~l~~~~---~~-~~tvii-~sH~~~~~~~~~d~i-~~l-~G~i~~~~~ 195 (223)
T TIGR03771 148 TQELLTELFIELA---GA-GTAILM-TTHDLAQAMATCDRV-VLL-NGRVIADGT 195 (223)
T ss_pred HHHHHHHHHHHHH---Hc-CCEEEE-EeCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 9765544332211 11 112212 239999999999999 567 698876654
No 152
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.47 E-value=6.8e-14 Score=125.32 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=86.8
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
..+++|++++|+||||||||||+++|+|. ..|++|.|.++|..+. |.+|.. .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~-----~~~q~~-----------~- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGITPV-----YKPQYI-----------D- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCEEEE-----EEcccC-----------C-
Confidence 47899999999999999999999999999 6799999999874321 111110 0
Q ss_pred cccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccc
Q 016139 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND 178 (394)
Q Consensus 99 ~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~ 178 (394)
.+.|++ +++..+-+++ .+|+++++| ||++++|....+.....+..+. .+-...+ .-.+
T Consensus 72 -------LSgGq~--qrv~laral~------~~p~lllLD---EPts~LD~~~~~~l~~~l~~~~---~~~~~ti-iivs 129 (177)
T cd03222 72 -------LSGGEL--QRVAIAAALL------RNATFYLFD---EPSAYLDIEQRLNAARAIRRLS---EEGKKTA-LVVE 129 (177)
T ss_pred -------CCHHHH--HHHHHHHHHh------cCCCEEEEE---CCcccCCHHHHHHHHHHHHHHH---HcCCCEE-EEEE
Confidence 112222 3333333333 599999999 9999999998755444332221 1100112 1224
Q ss_pred hhhHHHHHHHHHHHHHhcCCCc
Q 016139 179 KQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 179 h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
|+...+..+|+++ .+|+++..
T Consensus 130 H~~~~~~~~~d~i-~~l~~~~~ 150 (177)
T cd03222 130 HDLAVLDYLSDRI-HVFEGEPG 150 (177)
T ss_pred CCHHHHHHhCCEE-EEEcCCCc
Confidence 9999999999998 66666543
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.47 E-value=1.2e-14 Score=135.37 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 95 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGL-----------DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEc
Confidence 455677899999999999999999999999999 679999999998765321 1134555
Q ss_pred C-ccccceEEEecccccc---cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~---~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ......++.|...+.. ..... ......+++.++..+ ..+.+++++ .+|+++++| |
T Consensus 96 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD---E 172 (228)
T PRK10584 96 SFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD---E 172 (228)
T ss_pred ccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 4 2222334444432211 00000 000011111111101 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
|++++|+...+.....+..+.+ .....+.. .+|+...+.. |+++ ..|++|+++
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~sH~~~~~~~-~d~i-~~l~~g~i~ 225 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNR---EHGTTLIL-VTHDLQLAAR-CDRR-LRLVNGQLQ 225 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHHh-CCEE-EEEECCEEE
Confidence 9999999887555444322211 11112212 2388887754 8988 777888664
No 154
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.47 E-value=5.4e-14 Score=125.51 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=90.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+.+|+.++|+|+||+|||||+++|+|. ..|++|.|.++|.++.... ..|.++....
T Consensus 19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (173)
T cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL 87 (173)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcc
Confidence 445677899999999999999999999999999 6799999999987653211 1233333110
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l 166 (394)
...++.|.. .+.|++ +++ .+++++ .+|+++++| ||++++|+.........+..+.
T Consensus 88 ~~~tv~~~l---------LS~G~~--qrv-------~la~al~~~p~~lllD---EPt~~LD~~~~~~l~~~l~~~~--- 143 (173)
T cd03246 88 FSGSIAENI---------LSGGQR--QRL-------GLARALYGNPRILVLD---EPNSHLDVEGERALNQAIAALK--- 143 (173)
T ss_pred ccCcHHHHC---------cCHHHH--HHH-------HHHHHHhcCCCEEEEE---CCccccCHHHHHHHHHHHHHHH---
Confidence 001111111 111111 233 344444 599999999 9999999998755444332221
Q ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 167 EDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 167 ~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
+-...+.. .+|+...+ ..|+++ ..|++|+
T Consensus 144 -~~~~tii~-~sh~~~~~-~~~d~v-~~l~~G~ 172 (173)
T cd03246 144 -AAGATRIV-IAHRPETL-ASADRI-LVLEDGR 172 (173)
T ss_pred -hCCCEEEE-EeCCHHHH-HhCCEE-EEEECCC
Confidence 10112212 23888776 478888 6666664
No 155
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.47 E-value=1.4e-14 Score=135.18 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=102.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----ceeEEecCCcchhhh-----hhhccCCCc-
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKSA- 85 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p----~~G~i~v~g~~~~~l-----~~~~~~~~~- 85 (394)
.....+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.+|..
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 72 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGL-----------LPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPR 72 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCccCccccEEEECCEechhhhhhhheeEEEecCch
Confidence 34567899999999999999999999999999 456 899999999765422 123555542
Q ss_pred --cccceEEEeccccc---ccc-cC-CCCCchhhhhHHHh-----------------hhhHHhhhhcc-CCCCeEEecCC
Q 016139 86 --VPAFLEIHDIAGLV---RGA-HE-GQGLGNSFLSHIRA-----------------VDGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 --~~~~i~~~D~~gl~---~~~-~~-~~~l~~~~l~~l~~-----------------~d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.+..+++.+..... .+. .. .......+++.+.. --..+.+++++ .+|+++++|
T Consensus 73 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD-- 150 (230)
T TIGR02770 73 TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD-- 150 (230)
T ss_pred hhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 12122222211100 000 00 00000001111100 00114566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+.+ +....+.. .+|+.+.+..+|+++ .+|++|+++..++
T Consensus 151 -EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 209 (230)
T TIGR02770 151 -EPTTDLDVVNQARVLKLLRELRQ---LFGTGILL-ITHDLGVVARIADEV-AVMDDGRIVERGT 209 (230)
T ss_pred -CCccccCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999886544433322211 11112212 239999999999999 8889999887654
No 156
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.3e-14 Score=139.43 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCc-
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA- 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~- 85 (394)
-......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|..
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~ 91 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD 91 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH
Confidence 3556688899999999999999999999999999 6799999999998653211 13555542
Q ss_pred -cccceEEEecccccccccC-C-CCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 -VPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 -~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.....++.|...+...... . ... ....+..+...+ .-+.+++++ .+|+++++| ||+
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EPt 168 (279)
T PRK13635 92 NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD---EAT 168 (279)
T ss_pred HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 2333444554332210000 0 000 000111100000 115566776 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++|+.....+...+..+.+ .....+.. .+|++..+. .|+++ .+|.+|+++..++
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~---~~~~tili-vsH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKE---QKGITVLS-ITHDLDEAA-QADRV-IVMNKGEILEEGT 223 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCCEEEE-EecCHHHHH-cCCEE-EEEECCEEEEECC
Confidence 99999986554433222211 10112212 239998886 49999 8889999887765
No 157
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.47 E-value=4e-14 Score=146.78 Aligned_cols=173 Identities=15% Similarity=0.168 Sum_probs=109.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~-~ 85 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. .
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-----------YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN 89 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh
Confidence 456678899999999999999999999999999 679999999998765321 1 1355554 2
Q ss_pred cccceEEEeccccccccc---CCCC------CchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 86 VPAFLEIHDIAGLVRGAH---EGQG------LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~---~~~~------l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
.+..+++.|...+..... .... ....+++.+... -..+.+++|+ .+|+++++|
T Consensus 90 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD--- 166 (501)
T PRK10762 90 LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD--- 166 (501)
T ss_pred ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 333344555433321100 0000 000111111100 0115667777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|+.....+...+..+.+ ....+.. .+|+...+..+||++ .+|++|+++..++..
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~----~~~tvii-~sHd~~~~~~~~d~i-~~l~~G~i~~~~~~~ 226 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKS----QGRGIVY-ISHRLKEIFEICDDV-TVFRDGQFIAEREVA 226 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHH----CCCEEEE-EeCCHHHHHHhCCEE-EEEeCCEEEEecCcC
Confidence 99999999987555444332211 1112212 249999999999999 889999987665443
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.47 E-value=4.5e-14 Score=134.98 Aligned_cols=193 Identities=19% Similarity=0.096 Sum_probs=118.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
+++|+|+||||||||+|+|+|.... ++++|+||..+..|.....+ .++.++||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 6899999999999999999998765 48999999998888665443 35899999999764321
Q ss_pred -CCCCchhhhhHHHhhhhHHhhhhccCCCCe----E-EecCCCCC----cchHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 016139 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI----I-HVDDSVDP----VRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (394)
Q Consensus 105 -~~~l~~~~l~~l~~~d~il~vv~a~~~~~v----l-~ld~~~eP----~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (394)
...+.......++.+|++++|+|+...... + .+....-| .+..|..+.+.....+..+.+.. .+...+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~v~~ 143 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILE-DFKDIVP 143 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhc-CCCceEE
Confidence 111222344567889999998888532110 0 00000011 11222221111111111111110 0111222
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhH-----HHHHHhh-hhhcccCEeeecccchhhhh
Q 016139 175 RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (394)
Q Consensus 175 ~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e-----~e~i~~~-~~~~~kp~~~~~N~~~~~~~ 237 (394)
.|. .....++.+.+.+...++.+...++ ..+|+.+ .|++|+. +....+++||.+.+..+.+.
T Consensus 144 iSA-~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~ 212 (270)
T TIGR00436 144 ISA-LTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKS 212 (270)
T ss_pred Eec-CCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 232 5566788889998899999988766 4455543 2788888 55788999999987666553
No 159
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=1.2e-14 Score=140.50 Aligned_cols=173 Identities=12% Similarity=0.117 Sum_probs=108.1
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh---------hh--hhccC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~~ 82 (394)
-......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|+++.. .. ..|.+
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 91 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-----------LQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVF 91 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhhEEEEe
Confidence 3566788999999999999999999999999999 67999999999986531 11 13555
Q ss_pred CCc--cccceEEEeccccccccc---CC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecC
Q 016139 83 KSA--VPAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 83 ~~~--~~~~i~~~D~~gl~~~~~---~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
|.. .....++.+...+..... .. .......++.+... -..+.+++++ .+|+++++|
T Consensus 92 q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD- 170 (290)
T PRK13634 92 QFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD- 170 (290)
T ss_pred eCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 542 111234444332221000 00 00000011111110 0114566776 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.....+...+..+.+ .....+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 171 --EPt~~LD~~~~~~l~~~L~~l~~---~~g~tvii-itHd~~~~~~~~drv-~~l~~G~i~~~g~ 229 (290)
T PRK13634 171 --EPTAGLDPKGRKEMMEMFYKLHK---EKGLTTVL-VTHSMEDAARYADQI-VVMHKGTVFLQGT 229 (290)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999986544443322211 11112212 249999999999999 8899999987765
No 160
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=9.2e-15 Score=140.91 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=109.8
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh---------hh--hhcc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFK 81 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~---------l~--~~~~ 81 (394)
.-......+.+|+++||+|+||||||||+++|+|. ..|+.|.|.++|.++.. +. ..|.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 90 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMV 90 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhheEEE
Confidence 34566788899999999999999999999999999 67999999999976532 11 1455
Q ss_pred CCCc--cccceEEEecccccccc---cCC--CCCchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEec
Q 016139 82 PKSA--VPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 82 ~~~~--~~~~i~~~D~~gl~~~~---~~~--~~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld 138 (394)
||.. .....++.|...+.... ... ......++..+... + -.+.+++++ .+|+++++|
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6542 11112444443322110 000 00000111111110 0 115567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|+.....+...+..+.+ +....+ .-.+|+++.+..+||++ .+|++|+++..++.
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tv-l~vtH~~~~~~~~~dri-~~l~~G~i~~~g~~ 230 (286)
T PRK13646 171 ---EPTAGLDPQSKRQVMRLLKSLQT---DENKTI-ILVSHDMNEVARYADEV-IVMKEGSIVSQTSP 230 (286)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHH---hCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999997554443322211 111122 12249999999999999 89999999877653
No 161
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.3e-14 Score=135.43 Aligned_cols=172 Identities=12% Similarity=0.168 Sum_probs=105.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCCc-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~~-~~~ 88 (394)
.....++.+|++++|+|+||+|||||+++|+|. ..|+.|.|.++|.++.... ..|.++.. .+.
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFP 85 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcceEEEecccccCC
Confidence 455677899999999999999999999999999 6799999999987654211 13455542 222
Q ss_pred ceEEEecccccccccC-CC----CCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~~----~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|...+...... .. ......++.++.. -.-+.+++++ .+|+++++| ||+.++|
T Consensus 86 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~gLD 162 (232)
T cd03300 86 HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD---EPLGALD 162 (232)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 2344443322110000 00 0000000100000 0114566776 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..........+..+.+ +....+... +|+...+..+||++ .+|++|++...++
T Consensus 163 ~~~~~~l~~~l~~~~~---~~~~tiii~-sh~~~~~~~~~d~i-~~l~~G~~~~~~~ 214 (232)
T cd03300 163 LKLRKDMQLELKRLQK---ELGITFVFV-THDQEEALTMSDRI-AVMNKGKIQQIGT 214 (232)
T ss_pred HHHHHHHHHHHHHHHH---HcCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 9987554433322211 111122122 39999999999999 8889998876653
No 162
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.46 E-value=2.9e-14 Score=136.09 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=103.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-----hh--hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~--~~~~~~~~-- 85 (394)
......+++|++++|+||||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||..
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 98 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPST 98 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCchhhHhccEEEEecCchh
Confidence 455678899999999999999999999999999 67999999999876532 11 13445542
Q ss_pred -cccceEEEeccccc---c-cccCC--CCCchhhhhHHHh---------------hhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 -VPAFLEIHDIAGLV---R-GAHEG--QGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 -~~~~i~~~D~~gl~---~-~~~~~--~~l~~~~l~~l~~---------------~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.+...+. . ..... ......+++.+.. --..+.+++++ .+|+++++| |
T Consensus 99 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---E 175 (267)
T PRK15112 99 SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD---E 175 (267)
T ss_pred hcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc---C
Confidence 11112222211110 0 00000 0000011111100 00114566666 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---~~g~tvii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 233 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQE---KQGISYIY-VTQHLGMMKHISDQV-LVMHQGEVVERGS 233 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---HcCcEEEE-EeCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 9999999886554443322211 11112212 249999999999999 8889998876654
No 163
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.46 E-value=2.2e-14 Score=148.96 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=108.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------hhhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~~~~-~ 85 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... ...|.+|. .
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 96 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL 96 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc
Confidence 456777899999999999999999999999999 679999999998765321 11355655 2
Q ss_pred cccceEEEecccccccccCC-CCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 86 VPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~-~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
....+++.|...+....... ......++..+.. -.--+.+++++ .+|+++++| ||++++|+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD---EPt~~LD~ 173 (510)
T PRK15439 97 LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD---EPTASLTP 173 (510)
T ss_pred cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCCH
Confidence 33334444443322110000 0000001111100 00114566666 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
...+.+...+..+.+ -...+.. .+|+...+..+|+++ .+|++|+++..++.
T Consensus 174 ~~~~~l~~~l~~~~~----~g~tiii-vtHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (510)
T PRK15439 174 AETERLFSRIRELLA----QGVGIVF-ISHKLPEIRQLADRI-SVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHHHHH----CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecCh
Confidence 987555443322211 1112212 249999999999999 88999998876654
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.46 E-value=2.2e-14 Score=134.48 Aligned_cols=172 Identities=15% Similarity=0.222 Sum_probs=106.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCCc-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~~-~~~ 88 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.|+.. .+.
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~ 85 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-----------EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFK 85 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcCEEEEecChhhcc
Confidence 445567899999999999999999999999999 6789999999987653211 13555542 222
Q ss_pred ceEEEecccccccccCCC--CCc---hhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHEGQ--GLG---NSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~--~l~---~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
..++.+...+........ ... ...++.++..+ -.+.+++++ .+|+++++| ||++++|
T Consensus 86 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~~LD 162 (237)
T TIGR00968 86 HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD---EPFGALD 162 (237)
T ss_pred CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 233333332211100000 000 01111111100 115567777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+. ......+... +|+...+..+|+++ ..|++|++...++
T Consensus 163 ~~~~~~~~~~l~~~~---~~~~~tvli~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 214 (237)
T TIGR00968 163 AKVRKELRSWLRKLH---DEVHVTTVFV-THDQEEAMEVADRI-VVMSNGKIEQIGS 214 (237)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEE-eCCHHHHHhhcCEE-EEEECCEEEEecC
Confidence 998765544432221 1111222222 39999999999999 8889999876654
No 165
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.46 E-value=2.7e-14 Score=135.80 Aligned_cols=173 Identities=15% Similarity=0.188 Sum_probs=106.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---eeEEecCCcchhhh----------h--hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL----------C--QL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l----------~--~~ 79 (394)
......+.+|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... . ..
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~ 89 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-----------ITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCCceEEEECCEecccccccchhHHHHHhheE
Confidence 456677899999999999999999999999998 4454 59999999765321 1 14
Q ss_pred ccCCC-ccccceEEEeccccccccc--------C--CCC---CchhhhhHHHhhhh--------------HHhhhhcc-C
Q 016139 80 FKPKS-AVPAFLEIHDIAGLVRGAH--------E--GQG---LGNSFLSHIRAVDG--------------IFHVLRAF-E 130 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~gl~~~~~--------~--~~~---l~~~~l~~l~~~d~--------------il~vv~a~-~ 130 (394)
|.|+. ..+..+++.+...+..... . ... .....++.++..+. -+.+++|+ .
T Consensus 90 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQ 169 (262)
T ss_pred EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhc
Confidence 56665 2233344444432211000 0 000 00011111111110 15567777 8
Q ss_pred CCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+|+++++| ||++++|....+.+...+..+.+ .....+.. .+|+...+..+|+++ ..|++|++...++.
T Consensus 170 ~p~llllD---EPt~~LD~~~~~~l~~~l~~~~~---~~g~tvii-~tH~~~~~~~~~d~i-~~l~~g~i~~~g~~ 237 (262)
T PRK09984 170 QAKVILAD---EPIASLDPESARIVMDTLRDINQ---NDGITVVV-TLHQVDYALRYCERI-VALRQGHVFYDGSS 237 (262)
T ss_pred CCCEEEec---CccccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 99999999 99999999986554443322211 11112212 239999999999999 88899998777654
No 166
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.46 E-value=7.3e-14 Score=121.05 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=87.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEE
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
-......+.+|++++|+|+||+|||||+++|+|. ..|++|.|.++|.. .+.++
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~~----------------~i~~~ 68 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGSTV----------------KIGYF 68 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCeE----------------EEEEE
Confidence 3455678899999999999999999999999999 67999999998731 01111
Q ss_pred ecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 016139 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS 172 (394)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~ 172 (394)
.. .+.+++ +++. +++++ .+|+++++| ||++++|....+.....+. .+...
T Consensus 69 ~~----------lS~G~~--~rv~-------laral~~~p~illlD---EP~~~LD~~~~~~l~~~l~-------~~~~t 119 (144)
T cd03221 69 EQ----------LSGGEK--MRLA-------LAKLLLENPNLLLLD---EPTNHLDLESIEALEEALK-------EYPGT 119 (144)
T ss_pred cc----------CCHHHH--HHHH-------HHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHH-------HcCCE
Confidence 00 111222 3333 33444 599999999 9999999988654433322 11122
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 173 MKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 173 ~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
+.. .+|+.+.+..+|+++ ..|++|+
T Consensus 120 il~-~th~~~~~~~~~d~v-~~l~~g~ 144 (144)
T cd03221 120 VIL-VSHDRYFLDQVATKI-IELEDGK 144 (144)
T ss_pred EEE-EECCHHHHHHhCCEE-EEEeCCC
Confidence 212 249999988899988 6666653
No 167
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=3.1e-14 Score=136.78 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=106.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~ 83 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q 92 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-----------HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccCHHHHHhheEEEee
Confidence 455678899999999999999999999999999 679999999998765321 1 135565
Q ss_pred Cc--cccceEEEecccccccccC--CCC---CchhhhhHHHh---------------hhhHHhhhhcc-CCCCeEEecCC
Q 016139 84 SA--VPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 84 ~~--~~~~i~~~D~~gl~~~~~~--~~~---l~~~~l~~l~~---------------~d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.. .....++.|...+...... ... ....+++.+.. --..+.+++|+ .+|+++++|
T Consensus 93 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD-- 170 (280)
T PRK13649 93 FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD-- 170 (280)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 52 1112244443322110000 000 00001111100 00115566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+. +-...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 171 -EPt~~LD~~~~~~l~~~l~~~~----~~~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (280)
T PRK13649 171 -EPTAGLDPKGRKELMTLFKKLH----QSGMTIVL-VTHLMDDVANYADFV-YVLEKGKLVLSGK 228 (280)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH----HCCCEEEE-EeccHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999998755544432221 11112212 249999999999999 8899999876654
No 168
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=3.4e-14 Score=136.23 Aligned_cols=173 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS 84 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~ 84 (394)
-......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||.
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 86 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-----------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQN 86 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEECccccchHHHHHhheEEEeeC
Confidence 3556678999999999999999999999999999 67999999999976531 11 1355655
Q ss_pred c--cccceEEEecccccccccC--CCCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 A--VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 ~--~~~~i~~~D~~gl~~~~~~--~~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. .....++.|...+...... .... ...+++.++..+ -.+.+++|+ .+|+++++| |
T Consensus 87 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD---E 163 (275)
T PRK13639 87 PDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD---E 163 (275)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 2 1122344444332110000 0000 001111111000 114566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|......+...+..+.+ -...+.. .+|+...+..+|+++ .+|++|+++..++.
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~----~~~til~-vtH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 221 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNK----EGITIII-STHDVDLVPVYADKV-YVMSDGKIIKEGTP 221 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH----CCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999987554443322211 0112212 249999999999999 88999998877653
No 169
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.45 E-value=7.9e-14 Score=127.37 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=98.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~- 85 (394)
......+.+|++++|+|+||||||||+++|+|... ..|++|.|.++|.++.... ..|.|+..
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK---------YEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP 87 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh
Confidence 45567889999999999999999999999999821 2589999999997654321 12344431
Q ss_pred cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHH
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k 164 (394)
.+...++.++. .......+.|++ ++ +.+++++ .+|+++++| ||++++|....+.....+..+.
T Consensus 88 ~~~~~~~~~~l---~~~~~~LS~G~~--qr-------v~laral~~~p~illlD---EPt~~LD~~~~~~l~~~L~~~~- 151 (200)
T cd03217 88 EIPGVKNADFL---RYVNEGFSGGEK--KR-------NEILQLLLLEPDLAILD---EPDSGLDIDALRLVAEVINKLR- 151 (200)
T ss_pred hccCccHHHHH---hhccccCCHHHH--HH-------HHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHHHHHHHHH-
Confidence 11111111111 000000111111 22 3445555 699999999 9999999988654433322111
Q ss_pred HHHHHHHhhhcccchhhHHHHH-HHHHHHHHhcCCCceecC
Q 016139 165 RIEDVEKSMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 165 ~l~~~~~~~~~~~~h~~~~~~~-l~~ri~~~L~~g~~~~~~ 204 (394)
+-...+.. .+|+...+.. +|+++ .+|++|++...+
T Consensus 152 ---~~~~tiii-~sh~~~~~~~~~~d~i-~~l~~G~i~~~~ 187 (200)
T cd03217 152 ---EEGKSVLI-ITHYQRLLDYIKPDRV-HVLYDGRIVKSG 187 (200)
T ss_pred ---HCCCEEEE-EecCHHHHHHhhCCEE-EEEECCEEEEEc
Confidence 10112212 2399998887 79999 888999887665
No 170
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.1e-14 Score=134.41 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCc-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA-V 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~-~ 86 (394)
......+.+|+++||+|+||||||||+++|+|...+ .| -.|++|.|.++|.++.... ..|.||.. .
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL---YP---EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CC---CCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 456678899999999999999999999999998310 00 0147999999997653211 13566653 3
Q ss_pred ccceEEEecccccccccC---C-CCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 87 PAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~---~-~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
....++.|...+...... . ........+.++..+ .-+.+++++ .+|+++++|
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD-- 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD-- 171 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 344555555432211000 0 000000111111111 125567777 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|......+...+..+. . ...+ .-.+|+...+..+|+++ .+|++|++...++
T Consensus 172 -EP~~~LD~~~~~~l~~~l~~~~----~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14247 172 -EPTANLDPENTAKIESLFLELK----K-DMTI-VLVTHFPQQAARISDYV-AFLYKGQIVEWGP 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHHh----c-CCEE-EEEeCCHHHHHHhcCEE-EEEECCeEEEECC
Confidence 9999999998755544432221 1 1122 12249999999999999 8889999876654
No 171
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.7e-14 Score=138.28 Aligned_cols=171 Identities=18% Similarity=0.107 Sum_probs=105.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~ 85 (394)
-......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-----------LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP 86 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEECCccccHHHHHhheEEEEECh
Confidence 3556678899999999999999999999999999 679999999999765321 1 13455542
Q ss_pred --cccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 --VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.....++.|...+...... . .......++.+...+ ..+.+++++ .+|+++++| ||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP 163 (274)
T PRK13644 87 ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD---EV 163 (274)
T ss_pred hhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1222344444322211000 0 000000111111000 014566776 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++|+.........+..+. .-...+.. .+|++..+. .|+++ .+|++|+++..++
T Consensus 164 t~gLD~~~~~~l~~~l~~l~----~~g~til~-~tH~~~~~~-~~d~v-~~l~~G~i~~~g~ 218 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLH----EKGKTIVY-ITHNLEELH-DADRI-IVMDRGKIVLEGE 218 (274)
T ss_pred cccCCHHHHHHHHHHHHHHH----hCCCEEEE-EecCHHHHh-hCCEE-EEEECCEEEEECC
Confidence 99999988654433322211 10112212 249999884 69999 8899999887765
No 172
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.45 E-value=2.7e-14 Score=133.85 Aligned_cols=169 Identities=16% Similarity=0.144 Sum_probs=101.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccC-CC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKP-KS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~-~~-~~ 86 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|.+.... . ..|.+ +. .+
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-----------LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 445678899999999999999999999999999 679999999988653211 0 12433 22 22
Q ss_pred ccceEEEecccccccccC-C-CC---CchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 87 PAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+..+++.|...+...... . .. ....+++.+... -..+.+++++ .+|+++++| ||+++
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~ 183 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD---EPTIG 183 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCC
Confidence 223333333222110000 0 00 000011110000 0114566776 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+|+...+.+...+..+.+ +....+.. .+|+...+..+|+++ .+|.+|++..
T Consensus 184 LD~~~~~~l~~~l~~~~~---~~~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~ 234 (236)
T cd03267 184 LDVVAQENIRNFLKEYNR---ERGTTVLL-TSHYMKDIEALARRV-LVIDKGRLLY 234 (236)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCCEEEE-EecCHHHHHHhCCEE-EEEeCCEEEe
Confidence 999987554443322211 00112212 249999999999999 7888887654
No 173
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=2.5e-14 Score=131.61 Aligned_cols=167 Identities=23% Similarity=0.298 Sum_probs=103.4
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----------hcc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFK 81 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~ 81 (394)
.-+.....++.|+.++|+||+|||||||+|+|.|+ ..|++|.+.++|.++..+.. .|.
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv 88 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV 88 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE
Confidence 34667788999999999999999999999999999 67999999999977654331 344
Q ss_pred CCC-ccccceEEEeccccc---ccccCC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecC
Q 016139 82 PKS-AVPAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 82 ~~~-~~~~~i~~~D~~gl~---~~~~~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
.|. ..-..+++.++..+. .+...+ .......+..+... .--+.++||+ .+|++++.|
T Consensus 89 FQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilAD- 167 (226)
T COG1136 89 FQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILAD- 167 (226)
T ss_pred CccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEee-
Confidence 444 333345555544431 111110 00000001110000 0114567777 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
||+..+|.-+.+.++..+..+.+. ....+ .-.||+.... ..|||+ ..|.+|+
T Consensus 168 --EPTgnLD~~t~~~V~~ll~~~~~~---~g~ti-i~VTHd~~lA-~~~dr~-i~l~dG~ 219 (226)
T COG1136 168 --EPTGNLDSKTAKEVLELLRELNKE---RGKTI-IMVTHDPELA-KYADRV-IELKDGK 219 (226)
T ss_pred --CccccCChHHHHHHHHHHHHHHHh---cCCEE-EEEcCCHHHH-HhCCEE-EEEeCCe
Confidence 999999999876655543333221 11122 2224887654 588888 6777776
No 174
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.1e-14 Score=135.72 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=105.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|+++.. +. ..|.||..
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL---IP---GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 456678899999999999999999999999998210 00 12579999999876532 11 14566652
Q ss_pred cccceEEEecccccccccC--C-CCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~-~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... . .....+....++.++ -.+.+++++ .+|+++++|
T Consensus 97 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD-- 174 (253)
T PRK14242 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD-- 174 (253)
T ss_pred CCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2111244443322110000 0 000000000011100 115567777 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+. . ...+.. .+|+...+..+||++ .+|++|++...++
T Consensus 175 -EPt~~LD~~~~~~l~~~l~~~~----~-~~tvii-~tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14242 175 -EPASALDPIATQKIEELIHELK----A-RYTIII-VTHNMQQAARVSDVT-AFFYMGKLIEVGP 231 (253)
T ss_pred -CCcccCCHHHHHHHHHHHHHHh----c-CCeEEE-EEecHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999998755544433221 1 112212 249999999999999 8889999876654
No 175
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.45 E-value=1.1e-13 Score=128.80 Aligned_cols=171 Identities=13% Similarity=0.160 Sum_probs=104.6
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CceeEEecCCcchhhh--h--hhccCCC-
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWL--C--QLFKPKS- 84 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~~~~l--~--~~~~~~~- 84 (394)
.-......+.+|++++|+||||||||||+++|+|. .. |++|.|.++|.++... . ..|.||.
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 90 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-----------VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDD 90 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc-----------cCCCCCCceEEEECCEECChHHhcccEEEeCCCC
Confidence 34566778999999999999999999999999998 55 7899999998765321 1 1355555
Q ss_pred ccccceEEEeccccccccc--C--CCCCc----hh-hhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCC
Q 016139 85 AVPAFLEIHDIAGLVRGAH--E--GQGLG----NS-FLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~--~--~~~l~----~~-~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
..+..+++.|...+..... . ..... .. .+..+...+ .-+.+++++ .+|+++++|
T Consensus 91 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD-- 168 (226)
T cd03234 91 ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD-- 168 (226)
T ss_pred ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe--
Confidence 2333344444333211000 0 00000 00 111111000 114566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhh-HHHHHHHHHHHHHhcCCCceec
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
||++++|+.........+..+.+ ....+.. .+|+. ..+..+||++ .+|++|+++..
T Consensus 169 -EP~~gLD~~~~~~~~~~l~~~~~----~~~tiii-~sh~~~~~~~~~~d~i-~~l~~G~i~~~ 225 (226)
T cd03234 169 -EPTSGLDSFTALNLVSTLSQLAR----RNRIVIL-TIHQPRSDLFRLFDRI-LLLSSGEIVYS 225 (226)
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHH----CCCEEEE-EecCCCHHHHHhCCEE-EEEeCCEEEec
Confidence 99999999986554443322211 1112212 23887 5889999999 88888887643
No 176
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.7e-14 Score=135.58 Aligned_cols=171 Identities=17% Similarity=0.201 Sum_probs=104.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence 456678899999999999999999999999999 67999999999976521 11 13555542
Q ss_pred c--ccceEEEecccccccccC-CC-CC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 V--PAFLEIHDIAGLVRGAHE-GQ-GL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 ~--~~~i~~~D~~gl~~~~~~-~~-~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
. ....++.+...+...... .. .. ....++.++..+ --+.+++++ .+|+++++| ||
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD---EP 163 (271)
T PRK13638 87 EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD---EP 163 (271)
T ss_pred hhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1 111122222211100000 00 00 001111111000 014566666 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++|......+...+..+. . -...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 164 t~~LD~~~~~~l~~~l~~~~---~-~g~tii~-vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIV---A-QGNHVII-SSHDIDLIYEISDAV-YVLRQGQILTHGA 219 (271)
T ss_pred cccCCHHHHHHHHHHHHHHH---H-CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999998655444332221 1 0112212 239999999999999 8899999887764
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.45 E-value=3.6e-14 Score=135.80 Aligned_cols=172 Identities=20% Similarity=0.264 Sum_probs=107.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc--------eeEEecCCcchhhh-----h--hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--------EARVNIPDERFEWL-----C--QL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~--------~G~i~v~g~~~~~l-----~--~~ 79 (394)
+....++..|++++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... . ..
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~-----------~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD-----------LTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA 86 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCcccccccCCceEEEECCEEcccCCHHHHHhhcE
Confidence 456678899999999999999999999999998 5566 89999998765321 1 14
Q ss_pred ccCCCc-cccceEEEecccccccccC---C---C---CCchhhhhHHHhhh--------------hHHhhhhccC-----
Q 016139 80 FKPKSA-VPAFLEIHDIAGLVRGAHE---G---Q---GLGNSFLSHIRAVD--------------GIFHVLRAFE----- 130 (394)
Q Consensus 80 ~~~~~~-~~~~i~~~D~~gl~~~~~~---~---~---~l~~~~l~~l~~~d--------------~il~vv~a~~----- 130 (394)
|.||.. ....+++.|+..+...... . . ......++.+...+ ..+.+++++-
T Consensus 87 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~ 166 (272)
T PRK13547 87 VLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPP 166 (272)
T ss_pred EecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 566652 2233455554432210000 0 0 00001111111000 1145666663
Q ss_pred -----CCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 131 -----DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 131 -----~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|+++++| ||++++|....+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 167 ~~~~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tvii-isH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (272)
T PRK13547 167 HDAAQPPRYLLLD---EPTAALDLAHQHRLLDTVRRLAR---DWNLGVLA-IVHDPNLAARHADRI-AMLADGAIVAHGA 238 (272)
T ss_pred cccCCCCCEEEEc---CccccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EECCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 89999999 99999999987655444332211 11112212 239999999999999 8899999887654
No 178
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.45 E-value=2.3e-14 Score=134.48 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=102.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~- 85 (394)
......+++|++++|+|+||||||||+++|+|... ..|++|.|.++|.++... . ..|.+|..
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---------YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE 87 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCcceEEECCEecCCCCHHHhhccceEeeecccc
Confidence 45567889999999999999999999999999821 158899999998764321 1 13445542
Q ss_pred cccceEEEecccccccc----------cCC--CCCchhhhhHHHh----------------hhhHHhhhhcc-CCCCeEE
Q 016139 86 VPAFLEIHDIAGLVRGA----------HEG--QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~----------~~~--~~l~~~~l~~l~~----------------~d~il~vv~a~-~~~~vl~ 136 (394)
.+...++.|...+.... ... .......++.++. --.-+.+++++ .+|++++
T Consensus 88 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 167 (243)
T TIGR01978 88 EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI 167 (243)
T ss_pred ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 22222222221110000 000 0000000000000 00114556666 7999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHH-HHHHHHHhcCCCceecCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l-~~ri~~~L~~g~~~~~~~ 205 (394)
+| ||++++|....+.+...+..+.+ -...+.. .+|+...+..+ |+++ .+|++|++...++
T Consensus 168 lD---EPt~~LD~~~~~~l~~~l~~~~~----~~~tvi~-vsH~~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (243)
T TIGR01978 168 LD---EIDSGLDIDALKIVAEGINRLRE----PDRSFLI-ITHYQRLLNYIKPDYV-HVLLDGRIVKSGD 228 (243)
T ss_pred ec---CCcccCCHHHHHHHHHHHHHHHH----CCcEEEE-EEecHHHHHhhcCCeE-EEEeCCEEEEecC
Confidence 99 99999999987555444322211 0112212 24999999988 7999 8889999877654
No 179
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.45 E-value=3.7e-14 Score=133.73 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=91.8
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccceEEEeccc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAG 97 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i~~~D~~g 97 (394)
+.+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++. |.||.. .....++.|+..
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~g~~i~-----~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDTVS-----YKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCceEE-----EecccccCCCCCCHHHHHH
Confidence 45678999999999999999999999999 6799999999886443 333331 111223333221
Q ss_pred ccccccCC-CCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHH
Q 016139 98 LVRGAHEG-QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (394)
Q Consensus 98 l~~~~~~~-~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~ 161 (394)
........ ......++..+... -.-+.+++++ .+|+++++| ||++.+|+...+.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD---EPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 84 SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLD---EPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred HHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHHHHHHH
Confidence 11000000 00000111111000 0114566676 799999999 99999999987554443322
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 162 l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+.+ .....+.. .+|+...+..+||++ .+|+.+
T Consensus 161 ~~~---~~~~tiii-vsHd~~~~~~~~d~i-~~l~~~ 192 (246)
T cd03237 161 FAE---NNEKTAFV-VEHDIIMIDYLADRL-IVFEGE 192 (246)
T ss_pred HHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEcCC
Confidence 211 11112212 249999999999998 566543
No 180
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.45 E-value=8.3e-14 Score=133.27 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=103.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----hhccCCCccc---
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSAVP--- 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----~~~~~~~~~~--- 87 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.|+....
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ 92 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-----------VRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWS 92 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEhHHhhccceEEEeccccccccC
Confidence 445678899999999999999999999999999 6799999999997653211 2355554211
Q ss_pred cceEEEecccccccc-------cCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 88 AFLEIHDIAGLVRGA-------HEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~-------~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
....+.++..+.... ... .......++.+...+ ..+.+++|+ .+|+++++| ||
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---EP 169 (272)
T PRK15056 93 FPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD---EP 169 (272)
T ss_pred CCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 111222222110000 000 000001111111110 115567776 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++++|+...+.....+..+. .-...+.. .+|+...+..+|+++ .++ +|++...++.
T Consensus 170 t~~LD~~~~~~l~~~L~~~~----~~g~tvii-vsH~~~~~~~~~d~v-~~~-~G~i~~~g~~ 225 (272)
T PRK15056 170 FTGVDVKTEARIISLLRELR----DEGKTMLV-STHNLGSVTEFCDYT-VMV-KGTVLASGPT 225 (272)
T ss_pred CccCCHHHHHHHHHHHHHHH----hCCCEEEE-EeCCHHHHHHhCCEE-EEE-CCEEEeecCH
Confidence 99999998755544332221 10112212 239999999999998 555 7888766543
No 181
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2e-14 Score=149.35 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=109.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~-~ 85 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. .
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 90 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-----------HEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS 90 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------cCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc
Confidence 566778899999999999999999999999999 6799999999987653211 2355554 2
Q ss_pred cccceEEEeccccccccc---CCC------CC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEec
Q 016139 86 VPAFLEIHDIAGLVRGAH---EGQ------GL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~---~~~------~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld 138 (394)
.+..+++.|...+..... .+. .. ...+++.++..+ --+.+++++ .+|+++++|
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLD 170 (510)
T PRK09700 91 VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMD 170 (510)
T ss_pred ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 233344444432211000 000 00 000111111000 115567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|+.....+...+..+.+ -...+.. .+|+...+..+|+++ .+|++|+++..++..
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~l~~----~g~tiii-vsHd~~~~~~~~d~v-~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 171 ---EPTSSLTNKEVDYLFLIMNQLRK----EGTAIVY-ISHKLAEIRRICDRY-TVMKDGSSVCSGMVS 230 (510)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEeeecchh
Confidence 99999999987555444332211 1122212 249999999999999 889999988766543
No 182
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=2.9e-14 Score=133.18 Aligned_cols=169 Identities=19% Similarity=0.248 Sum_probs=104.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+.... ..|.++....
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRF-----------YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFL 87 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCee
Confidence 455677899999999999999999999999999 6799999999997653211 1355554221
Q ss_pred cceEEEecccccccccCCCCC--------chhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGL--------GNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.|...+.......... ...++..+ . .--.-+.+++++ .+|+++++| |
T Consensus 88 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD---E 164 (234)
T cd03251 88 FNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD---E 164 (234)
T ss_pred ccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 123334433222110000000 00000000 0 001124566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|....+.+...+..+. + ...+.. .+|+...+.. |+++ ..|++|++...++
T Consensus 165 P~~~LD~~~~~~l~~~l~~~~----~-~~tii~-~sh~~~~~~~-~d~v-~~l~~G~i~~~~~ 219 (234)
T cd03251 165 ATSALDTESERLVQAALERLM----K-NRTTFV-IAHRLSTIEN-ADRI-VVLEDGKIVERGT 219 (234)
T ss_pred ccccCCHHHHHHHHHHHHHhc----C-CCEEEE-EecCHHHHhh-CCEE-EEecCCeEeeeCC
Confidence 999999998765544432221 1 112212 2399988866 9999 8889998876554
No 183
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.44 E-value=2.2e-14 Score=140.85 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=109.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----------hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+. ..|.+|.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~ 106 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-----------VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecC
Confidence 556778899999999999999999999999999 6789999999998763221 1345554
Q ss_pred c---cccceEEEecccccc-----cccCC--CCCchhhhhHHHh-hh--------------hHHhhhhcc-CCCCeEEec
Q 016139 85 A---VPAFLEIHDIAGLVR-----GAHEG--QGLGNSFLSHIRA-VD--------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~-----~~~~~--~~l~~~~l~~l~~-~d--------------~il~vv~a~-~~~~vl~ld 138 (394)
. +...+++.|...... ..... ......+++.+.. .+ --+.+++|+ .+|+++++|
T Consensus 107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 233344444432110 00000 0000011111111 00 015567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.||+.....++..+..+.+ .....+.. .+|++..+..+|+++ .+|..|+++..++
T Consensus 187 ---EPts~LD~~~~~~i~~lL~~l~~---~~~~til~-iTHdl~~~~~~~dri-~vl~~G~ive~g~ 245 (331)
T PRK15079 187 ---EPVSALDVSIQAQVVNLLQQLQR---EMGLSLIF-IAHDLAVVKHISDRV-LVMYLGHAVELGT 245 (331)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHHH---HcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999987555444333222 11112212 249999999999999 8999999987764
No 184
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.4e-14 Score=138.45 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=106.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-- 85 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 94 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGL-----------LKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDN 94 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHH
Confidence 555678899999999999999999999999999 679999999999765321 1 13555552
Q ss_pred cccceEEEecccccccccC-C-CC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~-~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.....++.|...+...... . .. ....+++.+...+ ..+.+++|+ .+|+++++| ||++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP~~ 171 (271)
T PRK13632 95 QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD---ESTS 171 (271)
T ss_pred hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 2223455554332110000 0 00 0011111111110 115567777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++|....+.+...+..+.+ .-...+... +|+...+. .|+++ .+|.+|++...++
T Consensus 172 gLD~~~~~~l~~~l~~~~~---~~~~tiii~-sH~~~~~~-~~d~v-~~l~~G~i~~~g~ 225 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLRK---TRKKTLISI-THDMDEAI-LADKV-IVFSEGKLIAQGK 225 (271)
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCcEEEEE-EechhHHh-hCCEE-EEEECCEEEEecC
Confidence 9999887555444332211 100122122 38888875 79999 7889999876654
No 185
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=4.3e-14 Score=133.17 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=106.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
+.....+.+|+++||+|+||||||||+++|+|...+ ..|++|.|.++|+++... . ..|.||....
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l 90 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV 90 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHHHHhhhEEEEecCCcc
Confidence 455678899999999999999999999999998310 137899999999765321 1 1466665221
Q ss_pred cceEEEecccccccccC----CCCC---chhhhhHHHh-------h-----------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHE----GQGL---GNSFLSHIRA-------V-----------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~----~~~l---~~~~l~~l~~-------~-----------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.|+..+...... .... ....++.++. . -..+.+++++ .+|+++++|
T Consensus 91 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD--- 167 (246)
T PRK14269 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD--- 167 (246)
T ss_pred ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 12345554432210000 0000 0011111111 0 0115567777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+ .. ...+ .-.+|+...+..+||++ .+|++|+++..++
T Consensus 168 EP~~~LD~~~~~~l~~~l~~~----~~-~~ti-ii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 224 (246)
T PRK14269 168 EPTSALDPISSGVIEELLKEL----SH-NLSM-IMVTHNMQQGKRVADYT-AFFHLGELIEFGE 224 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHH----hC-CCEE-EEEecCHHHHHhhCcEE-EEEECCEEEEECC
Confidence 999999998864443332221 11 1122 12249999999999999 8899999886654
No 186
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.5e-14 Score=135.44 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=106.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|++++|+|+||||||||+++|+|...+.. -.|++|.|.++|.++.. .. ..|.+|..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE------GIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCc------CCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 55667889999999999999999999999999832000 01358999999876521 11 14566653
Q ss_pred cccceEEEecccccccccCC-C--CCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG-Q--GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~-~--~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+....... . .........++.++ .-+.+++++ .+|+++++|
T Consensus 98 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD-- 175 (254)
T PRK14273 98 NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD-- 175 (254)
T ss_pred ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 22224555543322110000 0 00000011111110 115567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.+...+..+. . ...+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 176 -EPt~~LD~~~~~~l~~~l~~~~----~-~~tvii-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 232 (254)
T PRK14273 176 -EPTSALDPISTGKIEELIINLK----E-SYTIII-VTHNMQQAGRISDRT-AFFLNGCIEEESS 232 (254)
T ss_pred -CCCcccCHHHHHHHHHHHHHHh----c-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999998765544433221 1 112212 249999999999999 8899999887654
No 187
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=9.9e-14 Score=125.92 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-hh--hhccCCC-ccccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKS-AVPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-l~--~~~~~~~-~~~~~i 90 (394)
......+.+|++++|+|+||||||||+++|+|... ..|++|.+.++|.++.. .. ..|.+|. ..+..+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~ 94 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT---------AGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNL 94 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCcceEEEECCEehHHHhhhceEEecccCccccCC
Confidence 45557889999999999999999999999999731 24789999999977531 11 1244443 222223
Q ss_pred EEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHH
Q 016139 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV 169 (394)
Q Consensus 91 ~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~ 169 (394)
++.|...+..... ..+.|++ ++ +.+++++ .+|+++++| ||++++|..........+..+. ..
T Consensus 95 tv~~~l~~~~~~~-~LSgGe~--qr-------v~la~al~~~p~vlllD---EP~~~LD~~~~~~l~~~l~~~~----~~ 157 (192)
T cd03232 95 TVREALRFSALLR-GLSVEQR--KR-------LTIGVELAAKPSILFLD---EPTSGLDSQAAYNIVRFLKKLA----DS 157 (192)
T ss_pred cHHHHHHHHHHHh-cCCHHHh--HH-------HHHHHHHhcCCcEEEEe---CCCcCCCHHHHHHHHHHHHHHH----Hc
Confidence 3333322211000 0111111 22 3445555 699999999 9999999988755444332211 11
Q ss_pred HHhhhcccchhhH-HHHHHHHHHHHHhcC-CCceec
Q 016139 170 EKSMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVRL 203 (394)
Q Consensus 170 ~~~~~~~~~h~~~-~~~~l~~ri~~~L~~-g~~~~~ 203 (394)
...+ .-.+|+.. .+...||++ .+|++ |++++.
T Consensus 158 ~~ti-iivtH~~~~~~~~~~d~i-~~l~~~g~i~~~ 191 (192)
T cd03232 158 GQAI-LCTIHQPSASIFEKFDRL-LLLKRGGKTVYF 191 (192)
T ss_pred CCEE-EEEEcCChHHHHhhCCEE-EEEcCCCeEEeC
Confidence 1122 12238887 467889998 77877 877653
No 188
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4e-14 Score=137.63 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=106.3
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh-------------------
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------- 74 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~------------------- 74 (394)
-......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.+..
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 91 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-----------LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQK 91 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEEeceeccccccccccccccccccccc
Confidence 4567788899999999999999999999999999 6799999999765331
Q ss_pred ----------hhh--hhccCCCc--cccceEEEecccccccccC-C-CCC---chhhhhHHHhh---------------h
Q 016139 75 ----------WLC--QLFKPKSA--VPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAV---------------D 120 (394)
Q Consensus 75 ----------~l~--~~~~~~~~--~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~---------------d 120 (394)
... ..|.+|.. .....++.|...+...... . ... ...++..+... -
T Consensus 92 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 171 (305)
T PRK13651 92 TRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQK 171 (305)
T ss_pred ccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 111 13555531 1111233443322210000 0 000 00111111110 0
Q ss_pred hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 121 GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 121 ~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
..+.+++++ .+|+++++| ||++++|+.....++..+..+. .....+.. .+|++..+...||++ .+|++|+
T Consensus 172 qrvalA~aL~~~P~lLlLD---EPt~~LD~~~~~~l~~~l~~l~----~~g~tiii-vtHd~~~~~~~adrv-~vl~~G~ 242 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFD---EPTAGLDPQGVKEILEIFDNLN----KQGKTIIL-VTHDLDNVLEWTKRT-IFFKDGK 242 (305)
T ss_pred HHHHHHHHHHhCCCEEEEe---CCCCCCCHHHHHHHHHHHHHHH----HCCCEEEE-EeeCHHHHHHhCCEE-EEEECCE
Confidence 114566776 799999999 9999999988655444332221 11122212 249999999999999 8899999
Q ss_pred ceecCCC
Q 016139 200 DVRLGDW 206 (394)
Q Consensus 200 ~~~~~~~ 206 (394)
++..++.
T Consensus 243 i~~~g~~ 249 (305)
T PRK13651 243 IIKDGDT 249 (305)
T ss_pred EEEECCH
Confidence 8877653
No 189
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.44 E-value=6.2e-14 Score=133.04 Aligned_cols=172 Identities=20% Similarity=0.286 Sum_probs=104.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc-----hhhh-----------hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL-----------CQ 78 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~-----~~~l-----------~~ 78 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.+ +... ..
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i 91 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-----------LAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCccccccccccCCHHHHHHHhhcce
Confidence 456677899999999999999999999999999 67999999999876 4211 11
Q ss_pred hccCCCc---cccceEEEeccccc---ccc-cCC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCC
Q 016139 79 LFKPKSA---VPAFLEIHDIAGLV---RGA-HEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPD 133 (394)
Q Consensus 79 ~~~~~~~---~~~~i~~~D~~gl~---~~~-~~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~ 133 (394)
.|.|+.. ....+++.+..... ... ... ......+++.+... --.+.+++++ .+|+
T Consensus 92 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~ 171 (258)
T PRK11701 92 GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR 171 (258)
T ss_pred EEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 3555542 11112212111100 000 000 00000111111110 0115567776 7999
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++| ||++++|+...+.+...+..+.+ .....+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 172 llllD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~ti-i~isH~~~~~~~~~d~i-~~l~~g~i~~~~~ 235 (258)
T PRK11701 172 LVFMD---EPTGGLDVSVQARLLDLLRGLVR---ELGLAV-VIVTHDLAVARLLAHRL-LVMKQGRVVESGL 235 (258)
T ss_pred EEEEc---CCcccCCHHHHHHHHHHHHHHHH---hcCcEE-EEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 99999 99999999886554443322211 111122 12249999999999999 8889999876654
No 190
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.44 E-value=9.3e-14 Score=131.15 Aligned_cols=170 Identities=15% Similarity=0.218 Sum_probs=104.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-V 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-~ 86 (394)
......+..|++++|+|+||||||||+++|+|. . |.+|.|.++|.++... . ..|.||.. .
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 80 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-----------L-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTP 80 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------C-CCCeEEEECCEecCcCCHHHHhhheEEecccCcc
Confidence 456778999999999999999999999999998 3 4489999998765321 1 14566552 2
Q ss_pred ccceEEEecccccccccCCCC----CchhhhhHHHhhh--------------hHHhhhhcc-C-------CCCeEEecCC
Q 016139 87 PAFLEIHDIAGLVRGAHEGQG----LGNSFLSHIRAVD--------------GIFHVLRAF-E-------DPDIIHVDDS 140 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~----l~~~~l~~l~~~d--------------~il~vv~a~-~-------~~~vl~ld~~ 140 (394)
....++.++..+......... ....+++.+...+ .-+.+++++ . +|+++++|
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD-- 158 (248)
T PRK03695 81 PFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD-- 158 (248)
T ss_pred CCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc--
Confidence 333444444333211000000 0011111111111 114566666 3 56999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.....+...+..+. +-...+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 159 -EPt~~LD~~~~~~l~~~L~~~~----~~~~tvi~-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 216 (248)
T PRK03695 159 -EPMNSLDVAQQAALDRLLSELC----QQGIAVVM-SSHDLNHTLRHADRV-WLLKQGKLLASGR 216 (248)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH----hCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999998655443332221 10112212 239999999999999 8999999887664
No 191
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=4.9e-14 Score=133.26 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=106.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh--h-----hh--hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l~--~~~~~~~- 84 (394)
......+.+|+++||+|+||||||||+++|+|...+ .+..|++|.|.++|.++. . .. ..|.||.
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~------~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL------NEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc------ccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 455677899999999999999999999999998310 000135999999987653 1 11 1355554
Q ss_pred ccccceEEEecccccccccC----CCCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEec
Q 016139 85 AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~----~~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld 138 (394)
.....+++.+...+...... .........+.+...+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 23333444444332110000 0000000001111110 115567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+. + ...+ .-.+|+...+..+||++ .+|++|+++..++
T Consensus 175 ---EP~~~LD~~~~~~l~~~l~~~~----~-~~ti-ii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (253)
T PRK14267 175 ---EPTANIDPVGTAKIEELLFELK----K-EYTI-VLVTHSPAQAARVSDYV-AFLYLGKLIEVGP 231 (253)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHh----h-CCEE-EEEECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999988655544433221 1 1122 22249999999999999 8899999876654
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=3.3e-14 Score=133.13 Aligned_cols=172 Identities=16% Similarity=0.264 Sum_probs=105.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++. ..+.
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-----------~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~ 84 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-----------IKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFP 84 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcCcCChhHcCEEEEeecCccCC
Confidence 445577899999999999999999999999999 6799999999987653211 1344444 2222
Q ss_pred ceEEEecccccccccC-C-CCCc---hhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-QGLG---NSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~~l~---~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
..++.|...+...... . .... ...+..++.. -.-+.+++++ .+|+++++| ||++++|
T Consensus 85 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gLD 161 (235)
T cd03299 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD---EPFSALD 161 (235)
T ss_pred CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCcccCC
Confidence 3344443332110000 0 0000 0011111000 0115566776 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+. ......+... +|+...+..+|+++ .+|++|+++..++
T Consensus 162 ~~~~~~l~~~l~~~~---~~~~~tili~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 213 (235)
T cd03299 162 VRTKEKLREELKKIR---KEFGVTVLHV-THDFEEAWALADKV-AIMLNGKLIQVGK 213 (235)
T ss_pred HHHHHHHHHHHHHHH---HhcCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999755444332221 1101122122 39999999999999 8889999876654
No 193
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.3e-14 Score=136.95 Aligned_cols=172 Identities=11% Similarity=0.055 Sum_probs=102.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-- 85 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|..
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 94 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-----------EKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDN 94 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheeEEEeChHH
Confidence 455677899999999999999999999999999 679999999999765321 1 13444442
Q ss_pred cccceEEEecccccccccC-C-CCC---chhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVR 145 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~ 145 (394)
.....++.+...+...... . ... ....++.+... -..+.+++|+ .+|+++++| ||++
T Consensus 95 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EPt~ 171 (269)
T PRK13648 95 QFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD---EATS 171 (269)
T ss_pred hcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcc
Confidence 1111122222111100000 0 000 00001111000 0115566777 899999999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++|......+...+..+. ......+.. .+|+...+.. |+++ .+|++|+++..++.
T Consensus 172 ~LD~~~~~~l~~~L~~~~---~~~~~tiii-vtH~~~~~~~-~d~i-~~l~~G~i~~~g~~ 226 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVK---SEHNITIIS-ITHDLSEAME-ADHV-IVMNKGTVYKEGTP 226 (269)
T ss_pred cCCHHHHHHHHHHHHHHH---HhcCCEEEE-EecCchHHhc-CCEE-EEEECCEEEEecCH
Confidence 999998755544332221 111112212 2399888875 9999 88999998877653
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.43 E-value=4.7e-14 Score=132.06 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=104.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.||....
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-----------YVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVL 87 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchh
Confidence 455677899999999999999999999999999 6799999999997654211 1456665322
Q ss_pred cceEEEecccccccccCCCCCc--------hhhhhHH--H-------hhh-------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI--R-------AVD-------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l--~-------~~d-------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.|...+........... ..++..+ . ... --+.+++++ .+|+++++| |
T Consensus 88 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---E 164 (237)
T cd03252 88 FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD---E 164 (237)
T ss_pred ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---C
Confidence 2234444333221100000000 0000000 0 000 114566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|....+.+...+..+. . ...+... +|+...+. .|+++ .+|.+|+++..++
T Consensus 165 P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sH~~~~~~-~~d~v-~~l~~G~i~~~~~ 219 (237)
T cd03252 165 ATSALDYESEHAIMRNMHDIC----A-GRTVIII-AHRLSTVK-NADRI-IVMEKGRIVEQGS 219 (237)
T ss_pred CcccCCHHHHHHHHHHHHHhc----C-CCEEEEE-eCCHHHHH-hCCEE-EEEECCEEEEEcC
Confidence 999999998755544432221 1 1122122 39998885 59998 8899999887654
No 195
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.43 E-value=6e-14 Score=129.87 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=101.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~ 86 (394)
-......++.|++++|+|+||||||||+++|+|. ..|++|.|.++|..+.... ..|.|+...
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 88 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-----------VELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV 88 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc
Confidence 3556678899999999999999999999999999 6699999999997654211 135555422
Q ss_pred ccceEEEecccccccccCCCCCchhhhhHHHhh-------------------------hhHHhhhhcc-CCCCeEEecCC
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------------------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------------------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
....++.|...+....... . ....++.+... -..+.+++++ .+|+++++|
T Consensus 89 l~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD-- 164 (221)
T cd03244 89 LFSGTIRSNLDPFGEYSDE-E-LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD-- 164 (221)
T ss_pred cccchHHHHhCcCCCCCHH-H-HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2122333332221110000 0 00000000000 0114566666 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
||++++|....+.....+..+. . ...+.. .+|+...+.. |+++ .+|++|+++..+
T Consensus 165 -EP~~~LD~~~~~~l~~~l~~~~---~--~~tii~-~sh~~~~~~~-~d~i-~~l~~g~~~~~~ 219 (221)
T cd03244 165 -EATASVDPETDALIQKTIREAF---K--DCTVLT-IAHRLDTIID-SDRI-LVLDKGRVVEFD 219 (221)
T ss_pred -CccccCCHHHHHHHHHHHHHhc---C--CCEEEE-EeCCHHHHhh-CCEE-EEEECCeEEecC
Confidence 9999999998655433332211 0 111212 2388888765 8988 788888876554
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=3e-14 Score=137.56 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh----------hh--hhccC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LC--QLFKP 82 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----------l~--~~~~~ 82 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. +. ..|.+
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~ 96 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-----------IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVF 96 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEccccccccccHHHHhccEEEEE
Confidence 456678899999999999999999999999999 67899999998875421 11 13555
Q ss_pred CCcc--ccceEEEecccccccccC--CCC---CchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEecC
Q 016139 83 KSAV--PAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 83 ~~~~--~~~i~~~D~~gl~~~~~~--~~~---l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld~ 139 (394)
|... ....++.+...+...... ... .....++.++.. + --+.+++|+ .+|+++++|
T Consensus 97 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD- 175 (289)
T PRK13645 97 QFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD- 175 (289)
T ss_pred eCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe-
Confidence 5421 111233332222110000 000 000011111110 0 115567776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 176 --EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii-isH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (289)
T PRK13645 176 --EPTGGLDPKGEEDFINLFERLNK---EYKKRIIM-VTHNMDQVLRIADEV-IVMHEGKVISIGS 234 (289)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999997665544332211 11112212 249999999999999 8899999877654
No 197
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=6.1e-14 Score=132.53 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=106.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|...+. | ..|++|.|.++|.++.. .. ..|.||..
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI---S---NVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc---c---CCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 4556778999999999999999999999999983100 0 01378999999877532 11 24666653
Q ss_pred cccceEEEecccccccccC--CC-C---CchhhhhHHHh-------hh-----------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQ-G---LGNSFLSHIRA-------VD-----------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~-~---l~~~~l~~l~~-------~d-----------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.+...+...... .. . .....++.++. .+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 172 (251)
T PRK14270 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD-- 172 (251)
T ss_pred CcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2222444444432211100 00 0 00011111110 00 114566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.........+..+. + ...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 173 -EP~~~LD~~~~~~l~~~L~~~~----~-~~ti-iivsH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (251)
T PRK14270 173 -EPTSALDPISTLKIEDLMVELK----K-EYTI-VIVTHNMQQASRVSDYT-AFFLMGDLIEFNK 229 (251)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH----h-CCeE-EEEEcCHHHHHHhcCEE-EEEECCeEEEeCC
Confidence 9999999988655444332221 1 1122 22249999999999999 8899999887654
No 198
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.7e-13 Score=141.77 Aligned_cols=172 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~- 85 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|+++... . ..|.||..
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 83 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-----------YQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN 83 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc
Confidence 456677899999999999999999999999999 679999999999765321 1 13555542
Q ss_pred cccceEEEecccccccccCCC--C------CchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQ--G------LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~--~------l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
....+++.|...+......+. . ....+++.+... -.-+.+++++ .+|+++++| |
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD---E 160 (491)
T PRK10982 84 LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD---E 160 (491)
T ss_pred cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe---C
Confidence 222334444332211000000 0 000011111000 0115566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|+...+.+...+..+. .....+.. .+|+...+..+||++ .+|++|+++..++.
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~----~~g~tvii-~tH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 218 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLK----ERGCGIVY-ISHKMEEIFQLCDEI-TILRDGQWIATQPL 218 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----hCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEeecCh
Confidence 999999998655544332221 11112212 249999999999999 89999998876543
No 199
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.43 E-value=5.7e-14 Score=129.92 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=100.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|..+... . ..|.+|....
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 89 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-----------YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTL 89 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcc
Confidence 455678899999999999999999999999999 568999999999765321 1 1355655322
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh---h----------------------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA---V----------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~---~----------------------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.|...+...... .......+..+.. . -.-+.+++++ .+|+++++|
T Consensus 90 ~~~tv~e~l~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD--- 165 (220)
T cd03245 90 FYGTLRDNITLGAPLAD-DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD--- 165 (220)
T ss_pred ccchHHHHhhcCCCCCC-HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 12344443322111000 0000011110000 0 1124566666 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
||++++|......+...+..+.+ . ..+.. .+|+...+ ++|+++ .+|++|+++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~---~--~tii~-~sH~~~~~-~~~d~v-~~l~~g~i~~ 218 (220)
T cd03245 166 EPTSAMDMNSEERLKERLRQLLG---D--KTLII-ITHRPSLL-DLVDRI-IVMDSGRIVA 218 (220)
T ss_pred CccccCCHHHHHHHHHHHHHhcC---C--CEEEE-EeCCHHHH-HhCCEE-EEEeCCeEee
Confidence 99999999987555444332211 1 12212 23888876 689998 7788887653
No 200
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=5.5e-14 Score=162.49 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=112.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh----h--hhhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l--~~~~~~~~-~~~ 87 (394)
+.....+.+|+++||+|+|||||||||++|+|. ..|++|.|.++|.++.. . .-.|.||. ...
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-----------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~ 2024 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-----------TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAID 2024 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECcchHHHHhhhEEEEeccccCC
Confidence 345567889999999999999999999999999 77999999999977631 1 12466765 333
Q ss_pred cceEEEecccccc---cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 88 AFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 88 ~~i~~~D~~gl~~---~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..+++.|...+.. +.... ......+++.+...+ --+.+++|+ .+|+++++| ||++++
T Consensus 2025 ~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD---EPTsGL 2101 (2272)
T TIGR01257 2025 DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD---EPTTGM 2101 (2272)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCCCC
Confidence 4455555433211 11000 000001111111100 014566666 799999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+..+..+...+..+.+ + ...+.. ++|++++++.+|+|+ .+|.+|+++..|+..
T Consensus 2102 Dp~sr~~l~~lL~~l~~---~-g~TIIL-tTH~mee~e~lcDrV-~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIR---E-GRAVVL-TSHSMEECEALCTRL-AIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred CHHHHHHHHHHHHHHHh---C-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 99997665544332211 1 122212 249999999999999 999999999887653
No 201
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=3.5e-14 Score=147.42 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ceeEEecCCcchhhh------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l------~--~~~~~~~ 84 (394)
......+..|+++||+||||||||||+++|+|. ..| ++|.|.++|.++... . ..|.||.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 90 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-----------YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQE 90 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEec
Confidence 556777899999999999999999999999998 444 799999998765321 1 2455655
Q ss_pred -ccccceEEEeccccccccc--C--C-CC---CchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAH--E--G-QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~--~--~-~~---l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
..+..+++.|...+..... . . .. ....+++.+... ---+.+++++ .+|+++++|
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD-- 168 (506)
T PRK13549 91 LALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD-- 168 (506)
T ss_pred cccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2333344444433221100 0 0 00 000111111110 0115566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|+.....+...+..+. +....+.. .+|+...+..+||++ .+|++|+++..++..
T Consensus 169 -EPt~~LD~~~~~~l~~~l~~l~----~~~~tvi~-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 169 -EPTASLTESETAVLLDIIRDLK----AHGIACIY-ISHKLNEVKAISDTI-CVIRDGRHIGTRPAA 228 (506)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHH----HCCCEEEE-EeCcHHHHHHhcCEE-EEEECCEEeeecccc
Confidence 9999999998755544433221 11112212 249999999999999 889999988765543
No 202
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.42 E-value=7e-14 Score=144.97 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=108.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------hhhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~~~~~- 85 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|+++... ...|.||..
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 338 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-----------TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK 338 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-----------CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHh
Confidence 445567899999999999999999999999999 678999999998754311 113556642
Q ss_pred ---cccceEEEecccccccccC---C----C----CCchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeE
Q 016139 86 ---VPAFLEIHDIAGLVRGAHE---G----Q----GLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ---~~~~i~~~D~~gl~~~~~~---~----~----~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl 135 (394)
.....++.+...+...... + . .....++..+... + .-+.+++++ .+|+++
T Consensus 339 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 339 AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred hCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence 3333444443222110000 0 0 0001111111110 0 115567777 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
++| ||++++|+...+.+...+..+.+ ....+... +|++..+..+|+++ .+|.+|+++..++..
T Consensus 419 lLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tviiv-sHd~~~~~~~~d~i-~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 419 LLD---EPTRGIDVGAKHEIYNVIYELAA----QGVAVLFV-SSDLPEVLGVADRI-VVMREGRIAGELARE 481 (501)
T ss_pred EEc---CCCCCCCHhHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHhhCCEE-EEEECCEEEEEEccc
Confidence 999 99999999997555444332211 11122122 39999999999999 789999988766543
No 203
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=3.9e-14 Score=136.12 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=106.1
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS 84 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~ 84 (394)
.-......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~ 93 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-----------LIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQN 93 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeccccccHHHHhhheEEEecC
Confidence 33556678899999999999999999999999999 679999999998766321 1 1355554
Q ss_pred cc--ccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 AV--PAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 ~~--~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.. ....++.|...+...... . .......++.++..+ --+.+++++ .+|+++++| |
T Consensus 94 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---E 170 (280)
T PRK13633 94 PDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD---E 170 (280)
T ss_pred hhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 21 111223333222111000 0 000001111111111 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+.+ .....+... +|++..+.. |+++ .+|++|+++..++
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillv-tH~~~~~~~-~d~v-~~l~~G~i~~~g~ 227 (280)
T PRK13633 171 PTAMLDPSGRREVVNTIKELNK---KYGITIILI-THYMEEAVE-ADRI-IVMDSGKVVMEGT 227 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-ecChHHHhc-CCEE-EEEECCEEEEecC
Confidence 9999999997655443332211 111122122 399998876 9999 8889999887765
No 204
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=7.4e-14 Score=132.55 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|+++||+|+||||||||+++|+|...... -.|++|.|.++|.++.. .. ..|.+|..
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK------NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCccc------CCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 45667889999999999999999999999999831000 01379999999876531 11 13556553
Q ss_pred cccceEEEecccccccccC--CCCC---chhhhhHHHh------------------hhhHHhhhhcc-CCCCeEEecCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~l---~~~~l~~l~~------------------~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
.....++.++..+...... .... ....++.+.. --.-+.+++++ .+|+++++|
T Consensus 103 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD--- 179 (258)
T PRK14268 103 NPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD--- 179 (258)
T ss_pred ccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 2112444444332210000 0000 0001111100 00115567777 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+. + ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 180 EPt~~LD~~~~~~l~~~l~~l~----~-~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 236 (258)
T PRK14268 180 EPTSALDPISTARIEDLIMNLK----K-DYTIVI-VTHNMQQAARISDYT-GFFLMGELIEFGQ 236 (258)
T ss_pred CCCcccCHHHHHHHHHHHHHHh----h-CCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999765544433221 1 112212 249999999999999 8899999877654
No 205
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.1e-14 Score=137.22 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=107.8
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----------------
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------------- 76 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------------- 76 (394)
.-......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++...
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-----------IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCEEcccccccccccccccccccc
Confidence 34566678899999999999999999999999999 679999999998654321
Q ss_pred -----h--hhccCCCc--cccceEEEecccccccccC-C----CCCchhhhhHHHhh-h--------------hHHhhhh
Q 016139 77 -----C--QLFKPKSA--VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV-D--------------GIFHVLR 127 (394)
Q Consensus 77 -----~--~~~~~~~~--~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~-d--------------~il~vv~ 127 (394)
. ..|.+|.. .....++.+...+...... . ......++..+... + ..+.+++
T Consensus 110 ~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAr 189 (320)
T PRK13631 110 NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAG 189 (320)
T ss_pred hHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 1 12444432 1111233333222110000 0 00001111111110 0 1155677
Q ss_pred cc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 128 AF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 128 a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++ .+|+++++| ||++++|......+...+..+. .-...+ .-.+|+++.+..+||++ .+|++|+++..++.
T Consensus 190 aL~~~p~iLLLD---EPtsgLD~~~~~~l~~~L~~l~----~~g~Ti-iivtHd~~~~~~~adri-~vl~~G~i~~~g~~ 260 (320)
T PRK13631 190 ILAIQPEILIFD---EPTAGLDPKGEHEMMQLILDAK----ANNKTV-FVITHTMEHVLEVADEV-IVMDKGKILKTGTP 260 (320)
T ss_pred HHHcCCCEEEEE---CCccCCCHHHHHHHHHHHHHHH----HCCCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 77 899999999 9999999998755544433221 111122 12249999999999999 99999999887653
No 206
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5.7e-14 Score=131.33 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=103.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++....
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 86 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-----------YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVL 86 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChh
Confidence 445677899999999999999999999999999 669999999999765421 1 1355555221
Q ss_pred cceEEEecccccccccCCC---------CCchhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQ---------GLGNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~---------~l~~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.|...+........ ++ ...+..+ . .--..+.+++++ .+|+++++|
T Consensus 87 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD--- 162 (236)
T cd03253 87 FNDTIGYNIRYGRPDATDEEVIEAAKAAQI-HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD--- 162 (236)
T ss_pred hcchHHHHHhhcCCCCCHHHHHHHHHHcCc-HHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 1233333332211100000 00 0000000 0 000125566776 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.+...+..+ .+ ...+... +|+...+.. |+++ .+|++|+++..++
T Consensus 163 EP~~~LD~~~~~~l~~~l~~~----~~-~~tiii~-sh~~~~~~~-~d~~-~~l~~g~i~~~~~ 218 (236)
T cd03253 163 EATSALDTHTEREIQAALRDV----SK-GRTTIVI-AHRLSTIVN-ADKI-IVLKDGRIVERGT 218 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cC-CCEEEEE-cCCHHHHHh-CCEE-EEEECCEEEeeCC
Confidence 999999999865544433222 11 1222122 388888865 9999 8889998876543
No 207
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.42 E-value=7.5e-14 Score=132.64 Aligned_cols=175 Identities=16% Similarity=0.190 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. +. ..|.+|..
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL---YP---EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CC---CCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 455677899999999999999999999999998310 00 12579999999876531 11 13555552
Q ss_pred cccceEEEecccccccccCC---C---CCchhhhhHHHh-------hh-----------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRA-------VD-----------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~---~---~l~~~~l~~l~~-------~d-----------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+......+ . ......++.++. .+ .-+.+++++ .+|+++++|
T Consensus 104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD-- 181 (260)
T PRK10744 104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD-- 181 (260)
T ss_pred ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc--
Confidence 21123444443322110000 0 000011111110 00 015567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+. . ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 182 -EPt~~LD~~~~~~l~~~L~~~~----~-~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (260)
T PRK10744 182 -EPCSALDPISTGRIEELITELK----Q-DYTVVI-VTHNMQQAARCSDYT-AFMYLGELIEFGN 238 (260)
T ss_pred -CCCccCCHHHHHHHHHHHHHHh----c-CCeEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999998765544433221 1 112212 249999999999999 8899999877654
No 208
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.42 E-value=1.2e-13 Score=129.31 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=104.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+++|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++....
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 88 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-----------YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL 88 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhh
Confidence 456678899999999999999999999999999 6799999999997653211 1355554221
Q ss_pred cceEEEecccccccccCCCCC--------chhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGL--------GNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.|...+.......... ...++..+ . ..-..+.+++++ .+|+++++| |
T Consensus 89 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---E 165 (238)
T cd03249 89 FDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD---E 165 (238)
T ss_pred hhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 122334433221110000000 00000000 0 001124566666 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.+...+..+ . -...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 166 P~~gLD~~~~~~l~~~l~~~----~-~g~~vi~~-sh~~~~~~-~~d~v-~~l~~G~i~~~~~ 220 (238)
T cd03249 166 ATSALDAESEKLVQEALDRA----M-KGRTTIVI-AHRLSTIR-NADLI-AVLQNGQVVEQGT 220 (238)
T ss_pred ccccCCHHHHHHHHHHHHHh----c-CCCEEEEE-eCCHHHHh-hCCEE-EEEECCEEEEeCC
Confidence 99999999976554433221 1 01112122 39998886 89999 8899999876654
No 209
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2e-13 Score=127.15 Aligned_cols=164 Identities=15% Similarity=0.192 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-h----------hccCCC-ccccceE
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-Q----------LFKPKS-AVPAFLE 91 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-~----------~~~~~~-~~~~~i~ 91 (394)
..+.+|.|++|||||||+|+|+|+ ++|+.|.|.++|..+.... . .|..|. +.+..++
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhcc-----------CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 369999999999999999999999 7899999999997653221 1 344444 5555666
Q ss_pred EEecccccccccCCCCCchhhhhHHHhhhhH--------------Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 92 ~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~i--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
+..+..+......... .++..+.+..-.++ +.+-||+ .+|+++.+| ||++.+|.-.+..++
T Consensus 93 VrgNL~YG~~~~~~~~-fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD---EPLaSLD~~RK~Eil 168 (352)
T COG4148 93 VRGNLRYGMWKSMRAQ-FDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD---EPLASLDLPRKREIL 168 (352)
T ss_pred EecchhhhhcccchHh-HHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec---CchhhcccchhhHHH
Confidence 6665554433221100 00111111111111 4566776 899999999 999999998876665
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
..++.+ .+.+..-+ .-.+|+++++.+|.|++ .+|++|++...|...
T Consensus 169 pylERL---~~e~~IPI-lYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~e 214 (352)
T COG4148 169 PYLERL---RDEINIPI-LYVSHSLDEVLRLADRV-VVLENGKVKASGPLE 214 (352)
T ss_pred HHHHHH---HHhcCCCE-EEEecCHHHHHhhhheE-EEecCCeEEecCcHH
Confidence 554333 22222222 12249999999999999 999999998887643
No 210
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=9.3e-14 Score=129.31 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=104.3
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCcc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~ 86 (394)
-......++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.++...
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 87 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-----------YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF 87 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch
Confidence 3556678899999999999999999999999999 678999999998765431 1 145565532
Q ss_pred ccceEEEecccccccccCCCCCc--------hhhhhHH----------------HhhhhHHhhhhcc-CCCCeEEecCCC
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l----------------~~~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
....++.|...+........... ..++..+ ...-..+.+++++ .+|+++++|
T Consensus 88 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD--- 164 (229)
T cd03254 88 LFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD--- 164 (229)
T ss_pred hhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 11123333332221110000000 0000000 0001125566776 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.+...+..+ .. ...+... +|+...+. .|+++ .+|++|++...++
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~----~~-~~tii~~-sh~~~~~~-~~d~i-~~l~~g~~~~~~~ 220 (229)
T cd03254 165 EATSNIDTETEKLIQEALEKL----MK-GRTSIII-AHRLSTIK-NADKI-LVLDDGKIIEEGT 220 (229)
T ss_pred CccccCCHHHHHHHHHHHHHh----cC-CCEEEEE-ecCHHHHh-hCCEE-EEEeCCeEEEeCC
Confidence 999999999875554433222 11 1122122 38888875 59999 8889999876543
No 211
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.7e-14 Score=145.31 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=108.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CceeEEecCCcchhhh--------hhhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEWL--------CQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p~~G~i~v~g~~~~~l--------~~~~~~~~~ 85 (394)
......++.|+++||+|+||||||||+++|+|. .. |++|.|.++|+++... ...|.+|..
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA-----------YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence 445677899999999999999999999999999 56 4899999998754311 124666652
Q ss_pred ----cccceEEEecccccc--cccC----CC----CCchhhhhHHHhh----h-----------hHHhhhhcc-CCCCeE
Q 016139 86 ----VPAFLEIHDIAGLVR--GAHE----GQ----GLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ----~~~~i~~~D~~gl~~--~~~~----~~----~l~~~~l~~l~~~----d-----------~il~vv~a~-~~~~vl 135 (394)
....+++.|..-+.. .... .. .....+++.+... + .-+.+++++ .+|+++
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 348 KRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred hhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 333445444432210 0000 00 0000111111110 0 115566777 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
++| ||++++|+...+.+...+..+.+ ....+... +|++..+..+||++ .+|.+|+++..++..
T Consensus 428 lLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvi~~-sHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 428 ILD---EPTRGIDVGAKYEIYKLINQLVQ----QGVAIIVI-SSELPEVLGLSDRV-LVMHEGKLKGDLINH 490 (506)
T ss_pred EEc---CCCCCcCHhHHHHHHHHHHHHHH----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEeccc
Confidence 999 99999999987655444332211 11222122 39999999999999 889999988765443
No 212
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.1e-13 Score=132.20 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=104.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
+.....+.+|+++||+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|.+|..
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL---IP---SARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc---cC---CCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 445677889999999999999999999999997210 00 02689999999876532 11 13556552
Q ss_pred cccceEEEecccccccccCC-C-C-CchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG-Q-G-LGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~-~-~-l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+....... . . ........+... -.-+.+++++ .+|+++++|
T Consensus 112 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD-- 189 (268)
T PRK14248 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD-- 189 (268)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc--
Confidence 21112334433221000000 0 0 000000001000 0115567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+. + ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 190 -EPt~~LD~~~~~~l~~~l~~~~----~-~~tiii-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 246 (268)
T PRK14248 190 -EPASALDPISNAKIEELITELK----E-EYSIII-VTHNMQQALRVSDRT-AFFLNGDLVEYDQ 246 (268)
T ss_pred -CCCcccCHHHHHHHHHHHHHHh----c-CCEEEE-EEeCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999998765544433221 1 112212 239999999999999 8899999877654
No 213
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.42 E-value=1.1e-13 Score=122.22 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=109.1
Q ss_pred CCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhh----------cc
Q 016139 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL----------FK 81 (394)
Q Consensus 12 ~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~----------~~ 81 (394)
++-......+++|+.+-|+||+|||||||+++|.+. .+|+.|.|.++|.++..+..- +.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-----------e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-----------ERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-----------hcCCCceEEECCeecccccccccchhhheeeeE
Confidence 345667778999999999999999999999999999 679999999999887665531 12
Q ss_pred CCC-ccccceEEEecccccccccC--CCCCchhhhhHHHhhh-----------------hHHhhhhcc-CCCCeEEecCC
Q 016139 82 PKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 82 ~~~-~~~~~i~~~D~~gl~~~~~~--~~~l~~~~l~~l~~~d-----------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.|. ..-...++.|+..+.-.... ......+..+.+..+. --+.++||+ ++|.+++.|
T Consensus 85 FQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD-- 162 (223)
T COG2884 85 FQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD-- 162 (223)
T ss_pred eeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec--
Confidence 222 23334455555554311100 0000011111110000 014556666 699999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
||+..+|+-....++..+ ..+++...++... +|+..-+...-.|+ ..|++|+++++.
T Consensus 163 -EPTGNLDp~~s~~im~lf----eeinr~GtTVl~A-THd~~lv~~~~~rv-l~l~~Grl~~d~ 219 (223)
T COG2884 163 -EPTGNLDPDLSWEIMRLF----EEINRLGTTVLMA-THDLELVNRMRHRV-LALEDGRLVRDE 219 (223)
T ss_pred -CCCCCCChHHHHHHHHHH----HHHhhcCcEEEEE-eccHHHHHhccCcE-EEEeCCEEEecc
Confidence 999999997754333322 2233344333222 49998888887777 788999887663
No 214
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.42 E-value=9.8e-14 Score=132.52 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=105.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|..+... . ..|.+|.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 97 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-----------ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQD 97 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcC
Confidence 556678899999999999999999999999998 679999999998765321 1 1344444
Q ss_pred c---cccceEEEecccccc----cccC--CCCCchhhhhHHHh---------------hhhHHhhhhcc-CCCCeEEecC
Q 016139 85 A---VPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~----~~~~--~~~l~~~~l~~l~~---------------~d~il~vv~a~-~~~~vl~ld~ 139 (394)
. ++...++.+...+.. .... ........+..++. --..+.+++++ .+|+++++|
T Consensus 98 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD- 176 (268)
T PRK10419 98 SISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD- 176 (268)
T ss_pred hhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe-
Confidence 2 222222222211100 0000 00000011111100 00114566776 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|....+.....+..+.+ .....+.. .+|+...+..+||++ .+|++|++...++.
T Consensus 177 --EPt~~LD~~~~~~~~~~l~~~~~---~~~~tiii-vsH~~~~i~~~~d~i-~~l~~G~i~~~g~~ 236 (268)
T PRK10419 177 --EAVSNLDLVLQAGVIRLLKKLQQ---QFGTACLF-ITHDLRLVERFCQRV-MVMDNGQIVETQPV 236 (268)
T ss_pred --CCCcccCHHHHHHHHHHHHHHHH---HcCcEEEE-EECCHHHHHHhCCEE-EEEECCEEeeeCCh
Confidence 99999999887555444332211 11112212 239999999999999 88899988766543
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.41 E-value=1.1e-13 Score=131.02 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=102.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----ceeEEecCCcchhhh-----hhhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p----~~G~i~v~g~~~~~l-----~~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.+|..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-----------LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence 455678899999999999999999999999999 456 899999998765321 113555542
Q ss_pred ---cccceEEEeccccc---ccccCCCCCchhhhhHHHhh-----------------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 86 ---VPAFLEIHDIAGLV---RGAHEGQGLGNSFLSHIRAV-----------------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 86 ---~~~~i~~~D~~gl~---~~~~~~~~l~~~~l~~l~~~-----------------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
.....++.+..... .+...........++.++.. ---+.+++++ .+|+++++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD--- 165 (254)
T PRK10418 89 RSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD--- 165 (254)
T ss_pred ccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 11111111111000 00000000000111111100 0114566776 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+.+ .....+ .-.+|+...+..+|+++ ..|++|++...++
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~---~~g~ti-l~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 224 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQ---KRALGM-LLVTHDMGVVARLADDV-AVMSHGRIVEQGD 224 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHH---hcCcEE-EEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999886555443322211 111122 12239999999999999 8889999876654
No 216
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.41 E-value=1.9e-13 Score=145.52 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=112.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
......++.|+++||+|++|||||||+|+|+|. ..|+.|.|.++|.++..+.. .|.||...-
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-----------y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L 558 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-----------YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL 558 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh
Confidence 345577899999999999999999999999999 67999999999998765432 577777555
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+.......+ +..+.++.+ .-.+.++||+ .+|.++++|
T Consensus 559 f~gSI~eNi~l~~p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 559 FSGSIRENIALGNPEATDE----EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred hcCcHHHHHhcCCCCCCHH----HHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 4555556554443222110 111111111 0125677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH--HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+ .++. ++. .-.+|.... .+.||+| .+|++|+++.+|+-
T Consensus 635 ---EaTSaLD~~sE~~I~~~L-------~~~~~~~T~-I~IaHRl~t-i~~adrI-iVl~~Gkiv~~gs~ 691 (709)
T COG2274 635 ---EATSALDPETEAIILQNL-------LQILQGRTV-IIIAHRLST-IRSADRI-IVLDQGKIVEQGSH 691 (709)
T ss_pred ---CcccccCHhHHHHHHHHH-------HHHhcCCeE-EEEEccchH-hhhccEE-EEccCCceeccCCH
Confidence 999999999975554332 2222 111 112377755 4679999 99999999988864
No 217
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.41 E-value=6.1e-14 Score=129.92 Aligned_cols=166 Identities=15% Similarity=0.180 Sum_probs=99.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----------hhhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----------~~~~~~~~ 84 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.|+.
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 90 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGL-----------RSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQA 90 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCC
Confidence 556677899999999999999999999999998 679999999999876421 11355554
Q ss_pred c-cccceEEEecccccccccCC---C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 85 A-VPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 85 ~-~~~~i~~~D~~gl~~~~~~~---~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. .....++.+...+....... . ......++.++..+ ..+.+++++ .+|+++++| |
T Consensus 91 ~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD---E 167 (220)
T TIGR02982 91 HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD---E 167 (220)
T ss_pred hhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 2 22223443333221110000 0 00011111111100 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCc
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
|+.++|....+.+...+..+.+ .....+.. .+|++. ...+||++ .+|++|++
T Consensus 168 P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~-~sh~~~-~~~~~d~v-~~l~~g~~ 219 (220)
T TIGR02982 168 PTAALDSKSGRDVVELMQKLAR---EQGCTILI-VTHDNR-ILDVADRI-VHMEDGKL 219 (220)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH---HcCCEEEE-EeCCHH-HHhhCCEE-EEEECCEE
Confidence 9999999886554443322211 11112212 238887 45789988 77777753
No 218
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=6e-13 Score=132.00 Aligned_cols=87 Identities=31% Similarity=0.350 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
-+|+|||.||+|||||||.|+|...++ +++|++|+++..|...+.|. .+.++||+|+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~-----------------~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR-----------------EFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc-----------------eEEEEECCCCCcCCc
Confidence 479999999999999999999998877 99999999999999999874 389999999975432
Q ss_pred C--CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 E--GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~--~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. ...+..+.+..+..||++++|+|+
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~ 93 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDG 93 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 1 222333445556666666665544
No 219
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.41 E-value=6.4e-14 Score=133.69 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=105.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|...+. .-.|++|.|.++|.++.. .. ..|.++..
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTI------DGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 4456778999999999999999999999999983100 002489999999976531 11 13555542
Q ss_pred cccceEEEecccccccccC---C-CCCc---hhhhhHHHhh------------------hhHHhhhhcc-CCCCeEEecC
Q 016139 86 VPAFLEIHDIAGLVRGAHE---G-QGLG---NSFLSHIRAV------------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~---~-~~l~---~~~l~~l~~~------------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
.....++.|...+...... . .... ...+..++.. ---+.+++++ .+|+++++|
T Consensus 110 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD- 188 (267)
T PRK14235 110 NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD- 188 (267)
T ss_pred CCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe-
Confidence 1111244443322110000 0 0000 0111111100 0114566777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.........+..+. . ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 189 --EPt~~LD~~~~~~l~~~L~~l~----~-~~tiii-vtH~~~~~~~~~d~v-~~l~~G~i~~~g~ 245 (267)
T PRK14235 189 --EPCSALDPIATAKVEELIDELR----Q-NYTIVI-VTHSMQQAARVSQRT-AFFHLGNLVEVGD 245 (267)
T ss_pred --CCCcCCCHHHHHHHHHHHHHHh----c-CCeEEE-EEcCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999998765544433221 1 112212 249999999999999 8889999876654
No 220
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=7.8e-14 Score=130.10 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=103.1
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------hhh--hc---cC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LF---KP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~~--~~---~~ 82 (394)
-......+..|+.++|+|+||||||||+++|+|+ ..|++|.|.++|.++.. +.+ .+ .|
T Consensus 20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnp 88 (235)
T COG1122 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88 (235)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEEECc
Confidence 3456778899999999999999999999999999 78999999999976442 111 12 22
Q ss_pred CCccccceEEEecccccccccC--CCCCchhhhhHHHhhhh-----------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 83 KSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~~~~~--~~~l~~~~l~~l~~~d~-----------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
...+.. -++.|-..+...... ......+....+..+.. .+.++.++ -+|+++++| |
T Consensus 89 d~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD---E 164 (235)
T COG1122 89 DDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD---E 164 (235)
T ss_pred cccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc---C
Confidence 221111 122222222111100 00000000000000000 02233333 489999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|+.....++..+..+.+. ..+.+ ...+|+++.+...|+++ .+|++|++++.++.
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~---~~~ti-i~~tHd~~~~~~~ad~v-~vl~~G~i~~~g~p 223 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEE---GGKTI-IIVTHDLELVLEYADRV-VVLDDGKILADGDP 223 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc---CCCeE-EEEeCcHHHHHhhCCEE-EEEECCEEeecCCH
Confidence 99999999875554433222111 11122 22349999999999999 99999999888763
No 221
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.41 E-value=2.3e-13 Score=140.48 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=100.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc-chhhhhhhccCCCc-cccceEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSA-VPAFLEI 92 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~-~~~~l~~~~~~~~~-~~~~i~~ 92 (394)
.....++..|.++||||+||+||||||++|+|. ..|++|.|..+.. ++.++. |.. .....++
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~-----------~~~~~G~i~~~~~~~v~~l~-----Q~~~~~~~~tv 83 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE-----------LEPDSGEVTRPKGLRVGYLS-----QEPPLDPEKTV 83 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC-----------CcCCCCeEeecCCceEEEeC-----CCCCcCCCccH
Confidence 345567889999999999999999999999999 6799999887642 333322 221 1111111
Q ss_pred Eecccccccc-----------------------------------c----------CCCCCch--hhhhHHH-hhhhHHh
Q 016139 93 HDIAGLVRGA-----------------------------------H----------EGQGLGN--SFLSHIR-AVDGIFH 124 (394)
Q Consensus 93 ~D~~gl~~~~-----------------------------------~----------~~~~l~~--~~l~~l~-~~d~il~ 124 (394)
.|..-..... + .+.++.. +-...+. .-..-+.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~ 163 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVA 163 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHH
Confidence 1110000000 0 0000000 0000000 0001134
Q ss_pred hhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-e
Q 016139 125 VLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-R 202 (394)
Q Consensus 125 vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~ 202 (394)
+++++ .+|++++|| ||+++||+-. +.+++..+..+...+ .-.+|+...+..+|++| ..|+.|++. +
T Consensus 164 LA~aL~~~pDlLLLD---EPTNHLD~~~-------i~WLe~~L~~~~gtv-iiVSHDR~FLd~V~t~I-~~ld~g~l~~y 231 (530)
T COG0488 164 LARALLEEPDLLLLD---EPTNHLDLES-------IEWLEDYLKRYPGTV-IVVSHDRYFLDNVATHI-LELDRGKLTPY 231 (530)
T ss_pred HHHHHhcCCCEEEEc---CCCcccCHHH-------HHHHHHHHHhCCCcE-EEEeCCHHHHHHHhhhe-EEecCCceeEe
Confidence 55555 799999999 9999999977 556777665554422 12239999999999999 888888775 5
Q ss_pred cCCCCh
Q 016139 203 LGDWKA 208 (394)
Q Consensus 203 ~~~~~~ 208 (394)
.|+++.
T Consensus 232 ~Gny~~ 237 (530)
T COG0488 232 KGNYSS 237 (530)
T ss_pred cCCHHH
Confidence 577763
No 222
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.2e-13 Score=124.09 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=101.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------hh--hccC---C
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKP---K 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~~--~~~~---~ 83 (394)
.+..|.|+.|+..+|+||||||||||+++++|. ..|.+|.+.+.|+++..- .. .+.+ .
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-----------~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-----------HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcc-----------cCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 467789999999999999999999999999999 457888888888765321 11 1211 1
Q ss_pred CccccceEEEe--------cccccccccCCCC--CchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEec
Q 016139 84 SAVPAFLEIHD--------IAGLVRGAHEGQG--LGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 84 ~~~~~~i~~~D--------~~gl~~~~~~~~~--l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld 138 (394)
.+.+.+..+.| +.|+......... ....++..+.. -...+.++||+ .+|.+++||
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec
Confidence 12222233333 3333321110000 00001111111 11236788888 999999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh----hcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM----KRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~----~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
||+.++|....+..+.. +..+.... -.-.+|..+++....+++ ..|.+|++++.+
T Consensus 197 ---EP~~GLDl~~re~ll~~-------l~~~~~~~~~~~ll~VtHh~eEi~~~~th~-lll~~g~v~~~g 255 (257)
T COG1119 197 ---EPAQGLDLIAREQLLNR-------LEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGEVVAQG 255 (257)
T ss_pred ---CccccCChHHHHHHHHH-------HHHHhcCCCCceEEEEEcchhhcccccceE-EEeeCCceeecc
Confidence 99999999997554332 22221110 001138888888877887 777888877654
No 223
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.41 E-value=1.5e-13 Score=126.82 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=97.3
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEe-cCCcchhhhhhhccCCCccccceEEEec
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~-v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
....++.|+++||+||||||||||+++|+|. ..|++|.|. +++..+. .. + ...++..+++.++
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~sG~i~~~~~~~~~-~~--~--~~~l~~~ltv~en 69 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGL-----------DAPDEGDFIGLRGDALP-LG--A--NSFILPGLTGEEN 69 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCCCEEEecCceec-cc--c--ccccCCcCcHHHH
Confidence 4567899999999999999999999999999 668999986 6654321 00 0 0011222233332
Q ss_pred ccccccccCC--CCCchhhhh----------HHHhh----hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhH
Q 016139 96 AGLVRGAHEG--QGLGNSFLS----------HIRAV----DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (394)
Q Consensus 96 ~gl~~~~~~~--~~l~~~~l~----------~l~~~----d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~d 158 (394)
..+....... ......... .++.. -.-+.+++++ .+|+++++| ||+..+|..........
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD---EP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD---GKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHHHHHH
Confidence 2221110000 000000000 00000 0114456666 799999999 99999998876544332
Q ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 159 i~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+ .+.+.. ..+ .-.+|++..+..+||++ .+|.+|++++.+++.
T Consensus 147 l---~~~~~~--~~i-i~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 147 L---ACQLQQ--KGL-IVLTHNPRLIKEHCHAF-GVLLHGKITMCEDLA 188 (213)
T ss_pred H---HHHhhC--CcE-EEEECCHHHHHHhcCee-EEEECCeEEEeCCHH
Confidence 2 111111 112 12249999999999999 889999998776654
No 224
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1e-13 Score=130.87 Aligned_cols=175 Identities=15% Similarity=0.214 Sum_probs=105.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------h--hhhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|...+. | ..|++|.|.++|.++.. . ...|.+|..
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~---~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI---P---GFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCC---C---CCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 4566788999999999999999999999999983100 0 01478999999876531 1 123555553
Q ss_pred cccceEEEecccccccccCC--C-CCchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG--Q-GLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~--~-~l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+....... . .........+... ..-+.+++++ .+|+++++|
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD-- 171 (250)
T PRK14262 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD-- 171 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe--
Confidence 22224444443322110000 0 0000000001100 0125567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+. . ...+.. .+|+...+..+|+++ .+|.+|++...++
T Consensus 172 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tili-~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14262 172 -EPTSALDPIATQRIEKLLEELS----E-NYTIVI-VTHNIGQAIRIADYI-AFMYRGELIEYGP 228 (250)
T ss_pred -CCccccCHHHHHHHHHHHHHHh----c-CcEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9999999998755544433221 1 112212 239999999999999 8889999886654
No 225
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1e-13 Score=132.49 Aligned_cols=167 Identities=12% Similarity=0.134 Sum_probs=98.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|..... ...|++|.|.++|.++.. .. ..|.||..
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~------~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI------EGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc------CCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 4556778999999999999999999999999983100 001689999999876521 11 13556552
Q ss_pred cccceEEEecccccccccC-CCCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.|...+...... .........+.++.++ .-+.+++++ .+|+++++| |
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---E 180 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD---E 180 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 2111244443322211000 0000000001111110 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~ 197 (394)
|++++|....+.+...+..+. + ...+ .-.+|+...+..+||++ .+|++
T Consensus 181 Pt~gLD~~~~~~l~~~l~~~~----~-~~ti-iivtH~~~~~~~~~d~i-~~l~~ 228 (269)
T PRK14259 181 PCSALDPISTLKIEETMHELK----K-NFTI-VIVTHNMQQAVRVSDMT-AFFNA 228 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHh----c-CCEE-EEEeCCHHHHHHhcCEE-EEEec
Confidence 999999988755544332221 1 1122 12249999999999999 77876
No 226
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=4.9e-14 Score=135.57 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=106.4
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCce---eEEecCCcchhhh-----h--hhccCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE---ARVNIPDERFEWL-----C--QLFKPK 83 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~---G~i~v~g~~~~~l-----~--~~~~~~ 83 (394)
-......+.+|+++||+|+||||||||+++|+|. ..|+. |.|.++|.++... . ..|.+|
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~-----------~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q 91 (282)
T PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGL-----------LLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQ 91 (282)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEE
Confidence 3556678899999999999999999999999999 56776 8999999765321 1 135555
Q ss_pred Cc--cccceEEEecccccccccC-C-CCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCC
Q 016139 84 SA--VPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 84 ~~--~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~ 141 (394)
.. .....++.|...+...... . ... ...+++.++..+ .-+.+++|+ .+|+++++|
T Consensus 92 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllD--- 168 (282)
T PRK13640 92 NPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD--- 168 (282)
T ss_pred CHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 42 2223455554432211000 0 000 001111111111 115567777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|......+...+..+.+ .....+.. .+|++..+. .|+++ .+|.+|+++..++
T Consensus 169 EPt~gLD~~~~~~l~~~l~~l~~---~~g~tvli-~tH~~~~~~-~~d~i-~~l~~G~i~~~g~ 226 (282)
T PRK13640 169 ESTSMLDPAGKEQILKLIRKLKK---KNNLTVIS-ITHDIDEAN-MADQV-LVLDDGKLLAQGS 226 (282)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHH-hCCEE-EEEECCEEEEeCC
Confidence 99999999997655444322211 11112212 239998884 79999 8889999887765
No 227
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.2e-13 Score=135.58 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----------hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|+ ..|++|.|.++|.++..+. ..|.+|.
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-----------~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~ 100 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-----------ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQN 100 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcC
Confidence 456777899999999999999999999999999 5689999999997753321 1244443
Q ss_pred c---cccceEEEeccccc----ccccCC--CCCchhhhhHHHhhh-h--------------HHhhhhcc-CCCCeEEecC
Q 016139 85 A---VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAVD-G--------------IFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~----~~~~~~--~~l~~~~l~~l~~~d-~--------------il~vv~a~-~~~~vl~ld~ 139 (394)
. +...+++.+..... ...... ......+++.+...+ . -+.+++|+ .+|+++++|
T Consensus 101 ~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD- 179 (327)
T PRK11308 101 PYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD- 179 (327)
T ss_pred chhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 2 22222222221100 000000 000011111111100 0 14566777 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.+|......++..+..+.+ .....+ .-.+|++..+..+||++ .+|..|+++..++
T Consensus 180 --EPts~LD~~~~~~i~~lL~~l~~---~~g~ti-l~iTHdl~~~~~~adrv-~vm~~G~ive~g~ 238 (327)
T PRK11308 180 --EPVSALDVSVQAQVLNLMMDLQQ---ELGLSY-VFISHDLSVVEHIADEV-MVMYLGRCVEKGT 238 (327)
T ss_pred --CCCccCCHHHHHHHHHHHHHHHH---HcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999987655444332222 111122 12249999999999999 8999999987765
No 228
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.41 E-value=1.1e-13 Score=130.78 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=102.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc-----hhhh---------h--h
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL---------C--Q 78 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~-----~~~l---------~--~ 78 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|.+ +... . .
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i 88 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-----------LAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEecccccccccccCCHHHHHHhhhcce
Confidence 455678899999999999999999999999999 67899999998865 3211 0 1
Q ss_pred hccCCCcc---ccceEEEecccc----cccc-c-CCCCCchhhhhHHHhh---------------hhHHhhhhcc-CCCC
Q 016139 79 LFKPKSAV---PAFLEIHDIAGL----VRGA-H-EGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPD 133 (394)
Q Consensus 79 ~~~~~~~~---~~~i~~~D~~gl----~~~~-~-~~~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~ 133 (394)
.|.+|... ...+++.++... .... . ........+++.+... -.-+.+++++ .+|+
T Consensus 89 ~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 168 (253)
T TIGR02323 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPR 168 (253)
T ss_pred EEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCC
Confidence 34444321 111111111110 0000 0 0000001111111110 0114566776 8999
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++| ||++++|+...+.....+..+ .......+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 169 vlllD---EP~~~LD~~~~~~l~~~l~~~---~~~~~~tii~-vsH~~~~~~~~~d~~-~~l~~G~i~~~~~ 232 (253)
T TIGR02323 169 LVFMD---EPTGGLDVSVQARLLDLLRGL---VRDLGLAVII-VTHDLGVARLLAQRL-LVMQQGRVVESGL 232 (253)
T ss_pred EEEEc---CCCccCCHHHHHHHHHHHHHH---HHhcCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEEEECC
Confidence 99999 999999999876554443222 1111112212 239999999999999 8889998876654
No 229
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.41 E-value=7.3e-14 Score=133.60 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|+++||+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. +. ..|.||..
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVEL---VP---SVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC---CC---CCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 445678899999999999999999999999998210 00 01689999999876521 11 24566653
Q ss_pred cccceEEEecccccccccC--CCCC-chhhhhHHHhh-------h--------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~l-~~~~l~~l~~~-------d--------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.+...+...... .... ...+...++.. + .-+.+++++ .+|+++++|
T Consensus 115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD-- 192 (271)
T PRK14238 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD-- 192 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 2111244444332110000 0000 00001111110 0 114566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.........+..+ .+ ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 193 -EPt~~LD~~~~~~l~~~l~~~----~~-~~tiii-vsH~~~~i~~~~d~i-~~l~~G~i~~~g~ 249 (271)
T PRK14238 193 -EPTSALDPISTLKVEELVQEL----KK-DYSIII-VTHNMQQAARISDKT-AFFLNGYVNEYDD 249 (271)
T ss_pred -CCCCcCCHHHHHHHHHHHHHH----Hc-CCEEEE-EEcCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999875544433222 11 112212 239999999999999 8889999877654
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.41 E-value=1.7e-13 Score=127.44 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=97.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh--hccCCCccccceEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKSAVPAFLEI 92 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~--~~~~~~~~~~~i~~ 92 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|..+..... .+.| ..++
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~------~~tv 101 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGLGGGFNP------ELTG 101 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhcccccCCC------CCcH
Confidence 455667899999999999999999999999998 67999999999876432211 1212 1222
Q ss_pred Eeccccccc---ccCC--CCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 93 HDIAGLVRG---AHEG--QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 93 ~D~~gl~~~---~~~~--~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
.|+..+... .... ......+++.+.. --.-+.+++++ .+|+++++| ||++++|+...
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~gLD~~~~ 178 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID---EVLAVGDAAFQ 178 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 222111100 0000 0000000000000 00114566776 799999999 99999999886
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
......+..+. .. ...+.. .+|+...+..+|+++ .+|++|+++..
T Consensus 179 ~~~~~~l~~~~---~~-~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~ 223 (224)
T cd03220 179 EKCQRRLRELL---KQ-GKTVIL-VSHDPSSIKRLCDRA-LVLEKGKIRFD 223 (224)
T ss_pred HHHHHHHHHHH---hC-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEec
Confidence 54433322211 11 112212 239999999999998 77888876543
No 231
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.41 E-value=1.5e-12 Score=115.02 Aligned_cols=84 Identities=55% Similarity=0.920 Sum_probs=68.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecC-CcchhhhhhhccCCCccccceEEEecccccccccCCCC
Q 016139 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (394)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~~~ 107 (394)
|+|++|||||||+|+|++....++++|++|..|+.|.+.++ + ..+.++|+||+.........
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG-----------------ARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC-----------------CeEEEEeccccchhhhcCCC
Confidence 58999999999999999987766899999999999998877 4 24799999999755444444
Q ss_pred CchhhhhHHHhhhhHHhhhhcc
Q 016139 108 LGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 108 l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+...+.+.++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~ 85 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDAS 85 (176)
T ss_pred ccHHHHHHHhccCEEEEEEecc
Confidence 5556667778888888887774
No 232
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.6e-13 Score=129.55 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=104.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|.+|..
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD---IE---NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc---cc---CCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 445677899999999999999999999999998310 00 01478999999876521 11 13555542
Q ss_pred cccceEEEecccccccccC-C-CC-CchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-G-QG-LGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~-~~-l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... . .. ........++..+ ..+.+++++ .+|+++++|
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD-- 172 (251)
T PRK14251 95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD-- 172 (251)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec--
Confidence 1112333333322110000 0 00 0000000011100 114566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.....+..+. . ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 173 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii-isH~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14251 173 -EPTSALDPISSSEIEETLMELK----H-QYTFIM-VTHNLQQAGRISDQT-AFLMNGDLIEAGP 229 (251)
T ss_pred -CCCccCCHHHHHHHHHHHHHHH----c-CCeEEE-EECCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 9999999998765544433221 1 112212 249999999999999 8899999876654
No 233
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.40 E-value=9.9e-14 Score=144.16 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=107.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------hh--hhccCCC--
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS-- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~--~~~~~~~-- 84 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||.
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 348 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-----------DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccc
Confidence 455667889999999999999999999999999 67999999999865421 11 2466664
Q ss_pred --ccccceEEEecccccccc----cC---C---C----CCchhhhhHHHhh-h--------------hHHhhhhcc-CCC
Q 016139 85 --AVPAFLEIHDIAGLVRGA----HE---G---Q----GLGNSFLSHIRAV-D--------------GIFHVLRAF-EDP 132 (394)
Q Consensus 85 --~~~~~i~~~D~~gl~~~~----~~---~---~----~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~ 132 (394)
.....+++.+...+.... .. + . .....+++.+... + -.+.+++++ .+|
T Consensus 349 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p 428 (510)
T PRK09700 349 DNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCP 428 (510)
T ss_pred cCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCC
Confidence 233334444443221100 00 0 0 0000111111110 1 115566776 799
Q ss_pred CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 133 ~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
+++++| ||++++|+...+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..+
T Consensus 429 ~lLlLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvi~v-sHd~~~~~~~~d~i-~~l~~G~i~~~~ 491 (510)
T PRK09700 429 EVIIFD---EPTRGIDVGAKAEIYKVMRQLAD----DGKVILMV-SSELPEIITVCDRI-AVFCEGRLTQIL 491 (510)
T ss_pred CEEEEC---CCCCCcCHHHHHHHHHHHHHHHH----CCCEEEEE-cCCHHHHHhhCCEE-EEEECCEEEEEe
Confidence 999999 99999999997666554433221 11122122 39999999999999 888999887543
No 234
>PRK15494 era GTPase Era; Provisional
Probab=99.40 E-value=3.2e-13 Score=133.16 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=123.5
Q ss_pred ccCCCc-------EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceE
Q 016139 20 RFSSHL-------KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (394)
Q Consensus 20 ~i~~g~-------~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~ 91 (394)
.++.|+ .++|+|.||||||||+|.|+|....+ ++.|++|+....|.+..++ .++.
T Consensus 41 ~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~ 103 (339)
T PRK15494 41 EVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVI 103 (339)
T ss_pred ccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEE
Confidence 356666 99999999999999999999987654 7899999988888888775 3589
Q ss_pred EEecccccccccC-CCCCchhhhhHHHhhhhHHhhhhccCCCC-e--EE---ecCCCCCc----chHHHHHHHHHHhHHH
Q 016139 92 IHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-I--IH---VDDSVDPV----RDLEVISAELRLKDIE 160 (394)
Q Consensus 92 ~~D~~gl~~~~~~-~~~l~~~~l~~l~~~d~il~vv~a~~~~~-v--l~---ld~~~eP~----~~ld~i~~el~~~di~ 160 (394)
++||||+...... ...+.......++.+|++++|+++..... . .+ +.....|. +.+|..+. .+.
T Consensus 104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-----~~~ 178 (339)
T PRK15494 104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-----YLN 178 (339)
T ss_pred EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-----cHH
Confidence 9999998643221 11122223345778899888887642111 0 00 00000111 12222111 011
Q ss_pred HHHHHHHHHH---HhhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhHH-----HHHHhh-hhhcccCEeeecc
Q 016139 161 FMERRIEDVE---KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPVVYLVN 230 (394)
Q Consensus 161 ~l~k~l~~~~---~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e~-----e~i~~~-~~~~~kp~~~~~N 230 (394)
.+.+.+.... ..+..| +.....++.+.+.+...++.|.++++ +.+|+... |+||+. +..+.+++||.+.
T Consensus 179 ~~~~~l~~~~~~~~i~~iS-Aktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~ 257 (339)
T PRK15494 179 DIKAFLTENHPDSLLFPIS-ALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLT 257 (339)
T ss_pred HHHHHHHhcCCCcEEEEEe-ccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEE
Confidence 1222221111 112222 25667788999999899999999887 55666542 788888 7778899999998
Q ss_pred cchhhhh
Q 016139 231 MNEKDYQ 237 (394)
Q Consensus 231 ~~~~~~~ 237 (394)
+..+.+.
T Consensus 258 v~i~~~~ 264 (339)
T PRK15494 258 VQTEKWE 264 (339)
T ss_pred EEEEEEE
Confidence 8766553
No 235
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.40 E-value=9.6e-14 Score=144.25 Aligned_cols=170 Identities=13% Similarity=0.151 Sum_probs=104.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------hhhccCCCc--
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSA-- 85 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~~~~~~~~~-- 85 (394)
.....++.|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... .-.|.||..
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 349 (510)
T PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGL-----------RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQS 349 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhh
Confidence 45567889999999999999999999999999 678999999998754321 124666542
Q ss_pred --cccceEEEeccccc-----ccc-cCC--CCCchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEecC
Q 016139 86 --VPAFLEIHDIAGLV-----RGA-HEG--QGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 86 --~~~~i~~~D~~gl~-----~~~-~~~--~~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld~ 139 (394)
++...++.+..-.. ... ... ......++..+... + .-+.+++++ .+|+++++|
T Consensus 350 ~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD- 428 (510)
T PRK15439 350 SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD- 428 (510)
T ss_pred CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC-
Confidence 22222332221100 000 000 00000111111110 0 114566666 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+.+ ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 429 --EPt~gLD~~~~~~l~~~l~~l~~----~g~tiIiv-sHd~~~i~~~~d~i-~~l~~G~i~~~~~ 486 (510)
T PRK15439 429 --EPTRGVDVSARNDIYQLIRSIAA----QNVAVLFI-SSDLEEIEQMADRV-LVMHQGEISGALT 486 (510)
T ss_pred --CCCcCcChhHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEEc
Confidence 99999999997665444332211 11122122 39999999999999 8889999886643
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.40 E-value=2.5e-13 Score=120.51 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=88.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.+ ...|.+|.......++.|
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~----~i~~~~q~~~~~~~tv~~ 82 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-----------WPWGSGRIGMPEGE----DLLFLPQRPYLPLGTLRE 82 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCCc----eEEEECCCCccccccHHH
Confidence 456678899999999999999999999999999 67999999988731 123444442212233444
Q ss_pred cccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 016139 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~ 173 (394)
...+. .....+-+++ +++ .+++++ .+|+++++| ||++++|+...+.....+ .++...+
T Consensus 83 nl~~~--~~~~LS~G~~--~rv-------~laral~~~p~~lllD---EPt~~LD~~~~~~l~~~l-------~~~~~ti 141 (166)
T cd03223 83 QLIYP--WDDVLSGGEQ--QRL-------AFARLLLHKPKFVFLD---EATSALDEESEDRLYQLL-------KELGITV 141 (166)
T ss_pred Hhhcc--CCCCCCHHHH--HHH-------HHHHHHHcCCCEEEEE---CCccccCHHHHHHHHHHH-------HHhCCEE
Confidence 33221 0011111111 333 334444 599999999 999999998865443322 1121222
Q ss_pred hcccchhhHHHHHHHHHHHHHhcC
Q 016139 174 KRSNDKQLKIEHELCQRVKAWLQD 197 (394)
Q Consensus 174 ~~~~~h~~~~~~~l~~ri~~~L~~ 197 (394)
.-.+|+... ...||++ ..|++
T Consensus 142 -iivsh~~~~-~~~~d~i-~~l~~ 162 (166)
T cd03223 142 -ISVGHRPSL-WKFHDRV-LDLDG 162 (166)
T ss_pred -EEEeCChhH-HhhCCEE-EEEcC
Confidence 122388764 4578877 44443
No 237
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.40 E-value=9.7e-14 Score=149.17 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=110.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||+..-
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-----------ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 455677899999999999999999999999999 67999999999987754321 477777443
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+....... +..+.++.+ ---+.++||+ .+|+++++|
T Consensus 539 f~gTI~eNi~~~~~~~~e-----~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLD-----EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred CcccHHHHHhcCCCCCHH-----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344555555443221100 000111100 0115677877 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..+++.+...+ ....+++ .-.+|....+. .||+| ..|++|+++..|+.
T Consensus 614 ---EpTS~LD~~te~~i~~~L-------~~~~~T~-IiItHr~~~i~-~~D~I-ivl~~G~iv~~G~~ 668 (686)
T TIGR03797 614 ---EATSALDNRTQAIVSESL-------ERLKVTR-IVIAHRLSTIR-NADRI-YVLDAGRVVQQGTY 668 (686)
T ss_pred ---CCccCCCHHHHHHHHHHH-------HHhCCeE-EEEecChHHHH-cCCEE-EEEECCEEEEECCH
Confidence 999999999875544332 2222222 22249887764 59999 88999999888763
No 238
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=2.5e-13 Score=125.36 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=94.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--h--hhccCCC-ccccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--C--QLFKPKS-AVPAF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--~--~~~~~~~-~~~~~ 89 (394)
.....++..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.++. ..+..
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~ 96 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-----------LHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKAD 96 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCEEccchhhhhceEEeecCcccccC
Confidence 455677899999999999999999999999999 679999999998765321 1 1344443 22222
Q ss_pred eEEEecccccccccC--CCCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 90 LEIHDIAGLVRGAHE--GQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 90 i~~~D~~gl~~~~~~--~~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
+++.|...+...... .......++..+.. --..+.+++++ .+|+++++| ||++++|....
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~~~ 173 (214)
T PRK13543 97 LSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD---EPYANLDLEGI 173 (214)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 333333221110000 00000111111110 01124566776 799999999 99999999986
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri 191 (394)
+.....+..+.+ -...+ .-.+|+...+..+|+++
T Consensus 174 ~~l~~~l~~~~~----~~~ti-ii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 174 TLVNRMISAHLR----GGGAA-LVTTHGAYAAPPVRTRM 207 (214)
T ss_pred HHHHHHHHHHHh----CCCEE-EEEecChhhhhhhcceE
Confidence 554443322211 01111 11249999999999886
No 239
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=6.4e-14 Score=134.45 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=106.4
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA- 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~- 85 (394)
-......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|..
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 91 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----------FEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPD 91 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEECCcCCHHHHhcceEEEEECHH
Confidence 3566678899999999999999999999999999 679999999998765321 1 13555542
Q ss_pred -cccceEEEecccccccccC-C-CCCchhhhhHHHhh---h--------------hHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 -VPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAV---D--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 -~~~~i~~~D~~gl~~~~~~-~-~~l~~~~l~~l~~~---d--------------~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.....++.|...+...... . ..........+..+ + .-+.+++++ .+|+++++| ||+
T Consensus 92 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD---EPt 168 (277)
T PRK13642 92 NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD---EST 168 (277)
T ss_pred HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 2223344443322110000 0 00000000111111 0 115566777 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+++|+.....+...+..+. ......+.. .+|++..+. .|+++ .+|++|+++..++.
T Consensus 169 ~~LD~~~~~~l~~~l~~l~---~~~g~tiil-~sH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 224 (277)
T PRK13642 169 SMLDPTGRQEIMRVIHEIK---EKYQLTVLS-ITHDLDEAA-SSDRI-LVMKAGEIIKEAAP 224 (277)
T ss_pred ccCCHHHHHHHHHHHHHHH---HhcCCEEEE-EeCCHHHHH-hCCEE-EEEECCEEEEeCCH
Confidence 9999998755544332211 111112212 239999886 59999 88999998876653
No 240
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.1e-13 Score=130.75 Aligned_cols=172 Identities=17% Similarity=0.247 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---ceeEEecCCcchhh-------hh--hhccC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------LC--QLFKP 82 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p---~~G~i~v~g~~~~~-------l~--~~~~~ 82 (394)
......+.+|++++|+|+||||||||+++|+|... ..| ++|.|.++|.++.. +. ..|.|
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 92 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND---------LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVF 92 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCccceEEECCEECcCcccchHhhhhcEEEEe
Confidence 55667889999999999999999999999999721 124 58999999876521 11 24566
Q ss_pred CCccccceEEEecccccc---cccCCCCCchhhhhHHHhh----------h-----------hHHhhhhcc-CCCCeEEe
Q 016139 83 KSAVPAFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAV----------D-----------GIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~---~~~~~~~l~~~~l~~l~~~----------d-----------~il~vv~a~-~~~~vl~l 137 (394)
|.......++.|...+.. +..............++.. + ..+.+++++ .+|+++++
T Consensus 93 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14239 93 QQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172 (252)
T ss_pred cCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 653222244444433211 0000000000000001100 0 115566776 89999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
| ||++++|....+.+...+..+. . ...+... +|+...+..+||++ .+|++|++...++
T Consensus 173 D---EPt~~LD~~~~~~l~~~l~~~~----~-~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T PRK14239 173 D---EPTSALDPISAGKIEETLLGLK----D-DYTMLLV-TRSMQQASRISDRT-GFFLDGDLIEYND 230 (252)
T ss_pred c---CCccccCHHHHHHHHHHHHHHh----h-CCeEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9 9999999998755544433221 1 1122122 39999999999999 8899999877654
No 241
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.40 E-value=1.4e-13 Score=148.61 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=110.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||+...
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 564 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-----------YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh
Confidence 445567899999999999999999999999999 67999999999988765431 577887544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+....... .++.+.++.+ ---+.++||+ .+|+++++|
T Consensus 565 f~gTi~eNi~l~~~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD 640 (710)
T TIGR03796 565 FEGTVRDNLTLWDPTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640 (710)
T ss_pred hhccHHHHhhCCCCCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 445566655443211100 0010111110 0115577777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+. +..+++ .-.+|.+..+. .||+| ..|++|+++..|+.
T Consensus 641 ---EptS~LD~~te~~i~~~l~-------~~~~T~-IiitHrl~~i~-~~D~I-ivl~~G~i~~~G~~ 695 (710)
T TIGR03796 641 ---EATSALDPETEKIIDDNLR-------RRGCTC-IIVAHRLSTIR-DCDEI-IVLERGKVVQRGTH 695 (710)
T ss_pred ---CccccCCHHHHHHHHHHHH-------hcCCEE-EEEecCHHHHH-hCCEE-EEEeCCEEEEecCH
Confidence 9999999998755433321 111221 12249887764 49999 88999999887764
No 242
>PLN03211 ABC transporter G-25; Provisional
Probab=99.40 E-value=5.4e-13 Score=142.14 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=108.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ceeEEecCCcchhhh---hhhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL---CQLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l---~~~~~~~~-~~~~ 88 (394)
+...+.+++|+.+||+||||||||||+++|+|. ..| .+|.|.++|.++... ...|.+|. ....
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~-----------~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~ 153 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGR-----------IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEEEECCEECchhhccceEEECcccccCC
Confidence 455677899999999999999999999999998 445 489999999765321 12466665 3333
Q ss_pred ceEEEecccccccccCCCCC--------chhhhhHHHhhh-------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 89 FLEIHDIAGLVRGAHEGQGL--------GNSFLSHIRAVD-------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l~~~d-------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.+++.|+..+.......... .+.+++.++..+ --+.+++++ .+|+++++|
T Consensus 154 ~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD-- 231 (659)
T PLN03211 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD-- 231 (659)
T ss_pred cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe--
Confidence 45666654432110000000 011111111100 013455555 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH-HHHHHHHHHHHHhcCCCceecCCCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|......+...+..+. +-.+.+.. ++|+.. .+.+++|++ .+|.+|++++.|+.+
T Consensus 232 -EPtsgLD~~~~~~l~~~L~~l~----~~g~TvI~-~sH~~~~~i~~~~D~i-ilL~~G~iv~~G~~~ 292 (659)
T PLN03211 232 -EPTSGLDATAAYRLVLTLGSLA----QKGKTIVT-SMHQPSSRVYQMFDSV-LVLSEGRCLFFGKGS 292 (659)
T ss_pred -CCCCCcCHHHHHHHHHHHHHHH----hCCCEEEE-EecCCCHHHHHhhceE-EEecCCcEEEECCHH
Confidence 9999999998755444332221 11122212 239887 588999999 889999999888653
No 243
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.39 E-value=1.2e-13 Score=143.14 Aligned_cols=172 Identities=12% Similarity=0.169 Sum_probs=108.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------h--hhhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l--~~~~~~~~~- 85 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.||..
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 337 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-----------LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRK 337 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccc
Confidence 455667889999999999999999999999999 67999999999876521 1 124666652
Q ss_pred ---cccceEEEecccccc--cc-------cCC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeE
Q 016139 86 ---VPAFLEIHDIAGLVR--GA-------HEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ---~~~~i~~~D~~gl~~--~~-------~~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl 135 (394)
....+++.+...+.. .. ... ......++..+... -.-+.+++++ .+|+++
T Consensus 338 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 338 RDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred cCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 233344444332210 00 000 00000111111110 0115566776 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++| ||++++|+...+.+...+..+.+ . ...+... +|+...+..+|+++ .+|++|+++..++.
T Consensus 418 lLD---EPt~~LD~~~~~~l~~~l~~~~~---~-g~tviiv-tHd~~~~~~~~d~v-~~l~~G~i~~~~~~ 479 (501)
T PRK10762 418 ILD---EPTRGVDVGAKKEIYQLINQFKA---E-GLSIILV-SSEMPEVLGMSDRI-LVMHEGRISGEFTR 479 (501)
T ss_pred EEc---CCCCCCCHhHHHHHHHHHHHHHH---C-CCEEEEE-cCCHHHHHhhCCEE-EEEECCEEEEEecc
Confidence 999 99999999997655444332211 0 1122122 39999999999999 88999998766543
No 244
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.1e-13 Score=132.10 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=105.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|+++||+|+||||||||+++|+|...+. ...|++|.|.++|.++.. .. ..|.||..
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTI------DIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc------CCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 4566778999999999999999999999999983100 002689999999876531 11 14556552
Q ss_pred cccceEEEecccccccccC--CC-CCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~-~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... .. .......+.+.... .-+.+++++ .+|+++++|
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD-- 188 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD-- 188 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 1111244443322110000 00 00000000011110 115567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|+...+.....+..+. . ...+.. .+|+...+..+||++ .+|++|+++..++.
T Consensus 189 -EPt~~LD~~~~~~l~~~l~~~~----~-~~tiii-~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 246 (267)
T PRK14237 189 -EPASALDPISTMQLEETMFELK----K-NYTIII-VTHNMQQAARASDYT-AFFYLGDLIEYDKT 246 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHHh----c-CCEEEE-EecCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 9999999988655544333221 1 112212 239999999999999 88999998877653
No 245
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.2e-13 Score=130.42 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=105.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|.++..
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL---IP---SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cC---CCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 455677889999999999999999999999997310 00 01368999999876532 11 13555552
Q ss_pred cccceEEEecccccccccCC---CCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~---~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.+...+....... ........+.+..++ .-+.+++++ .+|+++++|
T Consensus 94 ~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 171 (250)
T PRK14240 94 NPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD-- 171 (250)
T ss_pred ccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 21123444433221100000 000000001011110 115567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+ .. ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 172 -EP~~~LD~~~~~~l~~~l~~~----~~-~~tiii-~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (250)
T PRK14240 172 -EPTSALDPISTLKIEELIQEL----KK-DYTIVI-VTHNMQQASRISDKT-AFFLNGEIVEFGD 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EEeCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 999999999875554433222 11 112212 249999999999999 8899999876654
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.39 E-value=1.7e-13 Score=130.60 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCC-ccccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~-~~~~~i~~~ 93 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|... +.++. .+...+++.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~~------~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVS------VIAISAGLSGQLTGI 103 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEe------EEecccCCCCCCcHH
Confidence 456678899999999999999999999999999 679999999887420 00111 111112222
Q ss_pred ecccccccccC--CCCCc---hhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHH
Q 016139 94 DIAGLVRGAHE--GQGLG---NSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (394)
Q Consensus 94 D~~gl~~~~~~--~~~l~---~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~e 153 (394)
+...+...... ..... ..++..... .-.-+.+++++ .+|+++++| ||++++|+....
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD---EPt~gLD~~~~~ 180 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID---EALSVGDQTFAQ 180 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHH
Confidence 22211000000 00000 000000000 00013455665 799999999 999999998765
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.....+..+ .+....+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 181 ~l~~~L~~~----~~~g~tiIi-isH~~~~i~~~~d~i-~~l~~G~i~~~g~ 226 (264)
T PRK13546 181 KCLDKIYEF----KEQNKTIFF-VSHNLGQVRQFCTKI-AWIEGGKLKDYGE 226 (264)
T ss_pred HHHHHHHHH----HHCCCEEEE-EcCCHHHHHHHcCEE-EEEECCEEEEeCC
Confidence 444433222 111112212 239999999999999 8899999876654
No 247
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.6e-13 Score=134.68 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=106.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----------hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----------~~~~~~ 83 (394)
......+..|+++||+|+||||||||+++|+|+... .-.|++|.|.++|.++..+. ..|.||
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~-------~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY-------PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 456678999999999999999999999999998320 01257999999998753221 134455
Q ss_pred Cc---cccceEEEecc----cccccccCC--CCCchhhhhHHHhhh-----------------hHHhhhhcc-CCCCeEE
Q 016139 84 SA---VPAFLEIHDIA----GLVRGAHEG--QGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 84 ~~---~~~~i~~~D~~----gl~~~~~~~--~~l~~~~l~~l~~~d-----------------~il~vv~a~-~~~~vl~ 136 (394)
.. +...+++.+.. ....+.... ......+++.+...+ --+.+++|+ .+|++++
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 42 22222221111 000000000 000011111111100 014566776 7999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+| ||++.+|+.....++..+..+.+. ....+.. .+|++..+..+||++ .+|..|+++..++
T Consensus 177 lD---EPts~LD~~~~~~il~lL~~l~~~---~g~til~-iTHdl~~~~~~adri-~vm~~G~ive~g~ 237 (326)
T PRK11022 177 AD---EPTTALDVTIQAQIIELLLELQQK---ENMALVL-ITHDLALVAEAAHKI-IVMYAGQVVETGK 237 (326)
T ss_pred Ee---CCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99 999999999876655544333221 1112212 249999999999999 8999999987764
No 248
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=9e-14 Score=136.46 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=110.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
+.....+.+|+++||+|+||||||||+++|+|...... -.|++|.|.++|.++.. +. ..|.||..
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~------~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE------GTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 55567789999999999999999999999999832000 02678999999987641 11 24667764
Q ss_pred cccceEEEecccccccccC--CCCCch-hhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQGLGN-SFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~l~~-~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|+..+...... ...... .....++.+. ..+.++||+ .+|+++++|
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD-- 250 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD-- 250 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe--
Confidence 3334555555443211100 000000 0011111111 115677887 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|......+...+..+. . ...+ ...+|++..+..+||++ .+|++|+++..|+.
T Consensus 251 -EPts~LD~~~~~~i~~~i~~l~---~--~~Ti-i~iTH~l~~i~~~~Dri-ivl~~G~i~e~g~~ 308 (329)
T PRK14257 251 -EPTSALDPIATAKIEELILELK---K--KYSI-IIVTHSMAQAQRISDET-VFFYQGWIEEAGET 308 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHh---c--CCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999988654433322111 1 1122 22249999999999999 99999999877653
No 249
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.39 E-value=1.4e-13 Score=128.01 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=94.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......+++|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|....
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 92 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccc
Confidence 556678899999999999999999999999998 679999999998754321 1 1355554221
Q ss_pred cceEEEecccccccccC---CCCCchhhhhHHHhhh---------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 88 AFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~---~~~l~~~~l~~l~~~d---------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
...++.|...+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++++|
T Consensus 93 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD 169 (225)
T PRK10247 93 FGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD---EITSALD 169 (225)
T ss_pred ccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 12244444332110000 0000011121111111 114566776 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL 195 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L 195 (394)
....+.....+..+.+ +....+.. .+|+...+. .||++ ..|
T Consensus 170 ~~~~~~l~~~l~~~~~---~~~~tvii-~sh~~~~~~-~~d~i-~~l 210 (225)
T PRK10247 170 ESNKHNVNEIIHRYVR---EQNIAVLW-VTHDKDEIN-HADKV-ITL 210 (225)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEE-EECChHHHH-hCCEE-EEE
Confidence 9886554443322211 11111212 238888875 58888 555
No 250
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.4e-13 Score=130.66 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=104.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+++|++++|+|+||||||||+++|+|...+ .| ..|++|.|.++|.++.. .. ..|.||..
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~p---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQM---VP---NVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC---CC---CCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 445677899999999999999999999999998310 00 01258999999876531 11 13556552
Q ss_pred cccceEEEecccccccccC--C-CCCch---hhhhHHHhh----h--------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--G-QGLGN---SFLSHIRAV----D--------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~-~~l~~---~~l~~l~~~----d--------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... . ..... .+++.+... + .-+.+++++ .+|+++++|
T Consensus 103 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD-- 180 (259)
T PRK14274 103 NPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD-- 180 (259)
T ss_pred cccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 1111233343322111000 0 00000 011111100 0 115566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.........+..+. . ...+ .-.+|+...+..+|+++ .+|++|+++..++
T Consensus 181 -EPt~~LD~~~~~~l~~~l~~~~----~-~~ti-iivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 237 (259)
T PRK14274 181 -EPTSALDPVSTRKIEELILKLK----E-KYTI-VIVTHNMQQAARVSDQT-AFFYMGELVECND 237 (259)
T ss_pred -CCcccCCHHHHHHHHHHHHHHh----c-CCEE-EEEEcCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999998755544332221 1 1122 12239999999999999 8889999887654
No 251
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.4e-13 Score=128.54 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=105.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~- 84 (394)
......+.+|+++||+|+||||||||+++|+|.... .| ..|++|.|.++|..+.. +. ..|.||.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL---VP---SARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC---CC---CCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 455678899999999999999999999999998310 00 01368999999876532 11 1355555
Q ss_pred ccccceEEEecccccccccC---CCCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecC
Q 016139 85 AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~---~~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~ 139 (394)
......++.+...+...... ...........++..+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD- 173 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD- 173 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 22223344443322100000 0000000111111111 014566776 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+.+ ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 174 --EP~~gLD~~~~~~l~~~l~~~~~-----~~tiii-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14256 174 --EPASALDPISTLKIEELIEELKE-----KYTIII-VTHNMQQAARVSDYT-AFFYMGDLVECGE 230 (252)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHh-----CCcEEE-EECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 99999999987655444333211 112212 249999999999999 8889999877654
No 252
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.39 E-value=2.7e-13 Score=143.10 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=108.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
.....++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||+...
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----------YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 455677889999999999999999999999999 67999999999988754321 577887544
Q ss_pred cceEEEecccccccc-cCCCCC--------chhhhhHHH-hhh---------------hHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGA-HEGQGL--------GNSFLSHIR-AVD---------------GIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~-~~~~~l--------~~~~l~~l~-~~d---------------~il~vv~a~-~~~~vl~ld~~~ 141 (394)
..-++.|+..+.... .....+ ...+.+.+. ..| --+.++||+ .+|+++++|
T Consensus 429 f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD--- 505 (582)
T PRK11176 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD--- 505 (582)
T ss_pred ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE---
Confidence 444555555443211 000000 000000000 000 015577777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHH--HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+ .... +++ .-.+|....+ ..||+| ..|++|+++..|+.
T Consensus 506 EptsaLD~~t~~~i~~~l-------~~~~~~~tv-I~VtHr~~~~-~~~D~I-i~l~~g~i~e~g~~ 562 (582)
T PRK11176 506 EATSALDTESERAIQAAL-------DELQKNRTS-LVIAHRLSTI-EKADEI-LVVEDGEIVERGTH 562 (582)
T ss_pred CccccCCHHHHHHHHHHH-------HHHhCCCEE-EEEecchHHH-HhCCEE-EEEECCEEEEeCCH
Confidence 999999999864443222 1111 111 1224888655 559999 88899998877653
No 253
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.4e-13 Score=143.74 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=101.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc---cccceEE
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA---VPAFLEI 92 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~---~~~~i~~ 92 (394)
.....+..|++++|+||||||||||+++|+|. ..|++|.|.+.+.. ...|.||.. .+..+++
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~~~q~~~~~~~~~~t~ 401 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGE-----------LEPDSGTVKWSENA----NIGYYAQDHAYDFENDLTL 401 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCce----EEEEEcccccccCCCCCcH
Confidence 45667789999999999999999999999999 67999999987732 123444431 1222333
Q ss_pred EecccccccccCCCCCchhhhhHHHh---------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 93 HDIAGLVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 93 ~D~~gl~~~~~~~~~l~~~~l~~l~~---------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
.+...+.............++..+.. --.-+.+++++ .+|+++++| ||++++|+...+.+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~ 478 (530)
T PRK15064 402 FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD---EPTNHMDMESIESLN 478 (530)
T ss_pred HHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 33322111000000000011111110 00114566666 799999999 999999999865554
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-ecCCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDW 206 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~~~~~ 206 (394)
..+. .+...+.. .+|+...+..+|+++ ..|.+|+++ ..++.
T Consensus 479 ~~l~-------~~~~tvi~-vsHd~~~~~~~~d~i-~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 479 MALE-------KYEGTLIF-VSHDREFVSSLATRI-IEITPDGVVDFSGTY 520 (530)
T ss_pred HHHH-------HCCCEEEE-EeCCHHHHHHhCCEE-EEEECCeEEEcCCCH
Confidence 4322 12122212 249999999999999 888899886 55543
No 254
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2e-13 Score=131.57 Aligned_cols=172 Identities=15% Similarity=0.166 Sum_probs=103.7
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CceeEEecCCcchhh-------hh--hhccCCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEW-------LC--QLFKPKS 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v~g~~~~~-------l~--~~~~~~~ 84 (394)
.....+..|++++|+|+||||||||+++|+|.... .. |++|.|.++|.++.. .. ..|.+|.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~--------~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL--------IPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------CCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 34567889999999999999999999999997210 01 489999999876531 11 1355655
Q ss_pred ccccceEEEecccccccccC--C-CCCchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecC
Q 016139 85 AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~--~-~~l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
......++.|...+...... . ......+...++.. -..+.+++++ .+|+++++|
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD- 207 (286)
T PRK14275 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD- 207 (286)
T ss_pred CCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 21111244443332211000 0 00000000001000 0115567777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+. . ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 208 --EPt~gLD~~~~~~l~~~L~~~~----~-~~tvIi-vsH~~~~~~~~~d~i-~~L~~G~i~~~g~ 264 (286)
T PRK14275 208 --EPTSALDPKATAKIEDLIQELR----G-SYTIMI-VTHNMQQASRVSDYT-MFFYEGVLVEHAP 264 (286)
T ss_pred --CCCccCCHHHHHHHHHHHHHHh----c-CCeEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999988655444332221 1 112212 249999999999999 8899999876654
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.6e-13 Score=145.74 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=109.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++..+ . ..|.+|.
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~ 409 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRL-----------VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecC
Confidence 455667889999999999999999999999999 679999999999765321 1 1355554
Q ss_pred c---cccceEEEecccccc---cccCCC---CCchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEecC
Q 016139 85 A---VPAFLEIHDIAGLVR---GAHEGQ---GLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~---~~~~~~---~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld~ 139 (394)
. +...+++.|...... +..... .....+++.+... + .-+.+++++ .+|+++++|
T Consensus 410 ~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD- 488 (623)
T PRK10261 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD- 488 (623)
T ss_pred chhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 2 333344444332210 000000 0001111111110 0 115677777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.+|+.....++..+..+.+ .....+.. .+|++..+..+||++ .+|.+|+++..++
T Consensus 489 --EPts~LD~~~~~~i~~ll~~l~~---~~g~tvi~-isHdl~~v~~~~dri-~vl~~G~iv~~g~ 547 (623)
T PRK10261 489 --EAVSALDVSIRGQIINLLLDLQR---DFGIAYLF-ISHDMAVVERISHRV-AVMYLGQIVEIGP 547 (623)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999997665554433322 11112212 249999999999999 8899999887654
No 256
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.38 E-value=1.2e-13 Score=128.46 Aligned_cols=165 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA 85 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~ 85 (394)
.-......+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++..
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 97 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-----------YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP 97 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCCchHHcCHHHHHhhEEEEeccc
Confidence 34566678899999999999999999999999999 6799999999997654211 13445442
Q ss_pred cccceEEEecccccccccCC--------CCCchhhhhHH--H--------------hhhhHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG--------QGLGNSFLSHI--R--------------AVDGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~--------~~l~~~~l~~l--~--------------~~d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+....... ......++..+ . ..-.-+.+++++ .+|+++++|
T Consensus 98 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD-- 175 (226)
T cd03248 98 VLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD-- 175 (226)
T ss_pred HHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 11112333322211000000 00000111111 0 000115566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~ 199 (394)
||++++|....+.+...+..+. . ...+.. .+|+...+.. |+++ ..|++|+
T Consensus 176 -EPt~~LD~~~~~~l~~~l~~~~----~-~~tii~-~sh~~~~~~~-~d~i-~~l~~g~ 225 (226)
T cd03248 176 -EATSALDAESEQQVQQALYDWP----E-RRTVLV-IAHRLSTVER-ADQI-LVLDGGR 225 (226)
T ss_pred -CCcccCCHHHHHHHHHHHHHHc----C-CCEEEE-EECCHHHHHh-CCEE-EEecCCc
Confidence 9999999998755544332221 1 112212 2388888864 8888 6666664
No 257
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.1e-13 Score=129.96 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=103.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+++|++++|+|+||||||||+++|+|..... | ..|++|.|.++|.++.. .. ..|.+|..
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI---P---GFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc---C---CCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 5567788999999999999999999999999983100 0 01478999999876521 11 13555542
Q ss_pred cccceEEEecccccccccC-CCCCchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.+...+...... ...........++.+ -.-+.+++++ .+|+++++| |
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---E 177 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD---E 177 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 1111233333222110000 000000000001110 0115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc---------CCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~---------~g~~~~~~~ 205 (394)
|++++|+...+.....+..+.+ ...+... +|+...+..+|+++ .+|+ +|+++..++
T Consensus 178 Pt~~LD~~~~~~l~~~L~~~~~-----~~tvi~v-tH~~~~~~~~~d~v-~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 178 PCSALDPISTLRIEELMHELKE-----QYTIIIV-THNMQQAARVSDMT-AFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhc-----CCEEEEE-ecCHHHHHHhCCEE-EEEecccccccccCceEEEeCC
Confidence 9999999987655444332211 1122122 39999999999999 7777 687776654
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.38 E-value=3.8e-13 Score=139.10 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=102.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.+.|.++... . ..|.+|....
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGE-----------LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 456678899999999999999999999999999 679999999877544211 1 1344443110
Q ss_pred c---------ceEEEecccccccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 88 A---------FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 88 ~---------~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
. .+++.+...... ........+++.+...+ -.+.+++++ .+|+++++| ||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EP 162 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD---EP 162 (490)
T ss_pred hhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CC
Confidence 0 111111110000 00000001111111100 114566666 799999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++|+...+.....+..+.+ -...+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~----~g~tvii-~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 218 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQ----SGITLVL-VLNRFDEIPDFVQFA-GVLADCTLAETGE 218 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHh----cCCeEEE-EeCCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 999999987555444332211 0112212 249999999999999 8899999887654
No 259
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=4.1e-13 Score=120.92 Aligned_cols=170 Identities=18% Similarity=0.259 Sum_probs=107.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh---------hc-cCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------LF-KPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~---------~~-~~~~ 84 (394)
......|..|+.+.+||.||||||||+|+|+|. ..|++|.|.++|.++...+. .| .|..
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~ 91 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLA 91 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceecccCCHHHHhhHHHHHhcchhh
Confidence 456677899999999999999999999999998 78999999999998865442 22 3444
Q ss_pred ccccceEEEecccccccccCCCCCc--------hhhhhHHHhhh--------------------hHHhhhhccCCCCeEE
Q 016139 85 AVPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHIRAVD--------------------GIFHVLRAFEDPDIIH 136 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l~~~d--------------------~il~vv~a~~~~~vl~ 136 (394)
.....+++-++..+.....+..++. ..|...+...+ ++..+.-.++.|++++
T Consensus 92 gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 92 GTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred CCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE
Confidence 4455566666555543222221111 12222222111 1222333458999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
+| |-+..+|+-..++++..- .+..++.+ .-....+|+++.....-+|. .+|++|+++.+
T Consensus 172 LD---EHTAALDPkta~~vm~lT---~kiV~~~k-lTtlMVTHnm~~Al~yG~Rl-ImLh~G~IvlD 230 (263)
T COG1101 172 LD---EHTAALDPKTAEFVMELT---AKIVEEHK-LTTLMVTHNMEDALDYGNRL-IMLHSGKIVLD 230 (263)
T ss_pred ec---chhhcCCcchHHHHHHHH---HHHHHhcC-CceEEEeccHHHHHhhCCeE-EEEeCCeEEEE
Confidence 99 666666666654443321 12111111 11122359999988888998 89999999865
No 260
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.38 E-value=6.1e-13 Score=121.43 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=80.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~~~-~~~ 87 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+. ..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-----------LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 456677899999999999999999999999999 679999999999765321 1 1344544 222
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
...++.|...+..............++.+.. .-.-+.+++++ .+|+++++| ||++++|....
T Consensus 87 ~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD---EP~~~LD~~~~ 163 (200)
T PRK13540 87 PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD---EPLVALDELSL 163 (200)
T ss_pred cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCHHHH
Confidence 2344444433211000000000011111000 01125567777 899999999 99999999886
Q ss_pred HHHHh
Q 016139 153 ELRLK 157 (394)
Q Consensus 153 el~~~ 157 (394)
+....
T Consensus 164 ~~l~~ 168 (200)
T PRK13540 164 LTIIT 168 (200)
T ss_pred HHHHH
Confidence 54433
No 261
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=1.9e-13 Score=129.19 Aligned_cols=171 Identities=11% Similarity=0.124 Sum_probs=105.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ceeEEecCCcchhh-------hh--hh
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC--QL 79 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-----~~G~i~v~g~~~~~-------l~--~~ 79 (394)
-......+.+|++++|+|+||+|||||+++|+|. ..| ++|.|.++|.++.. .. ..
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 88 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM-----------HDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVG 88 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceeEEECCEEcccCccCHHHhhceeE
Confidence 3556677899999999999999999999999998 334 37999999876531 01 13
Q ss_pred ccCCC-ccccceEEEecccccccccC--CCC-CchhhhhHHHhh----------h-----------hHHhhhhcc-CCCC
Q 016139 80 FKPKS-AVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAV----------D-----------GIFHVLRAF-EDPD 133 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~gl~~~~~~--~~~-l~~~~l~~l~~~----------d-----------~il~vv~a~-~~~~ 133 (394)
|.+|. ..+...++.|...+...... ... ........++.. + .-+.+++++ .+|+
T Consensus 89 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14272 89 MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPE 168 (252)
T ss_pred EEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 55555 22333444444332110000 000 000000000000 0 114566776 8999
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++| ||++++|....+.....+..+ .. ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 169 llllD---EP~~~LD~~~~~~l~~~l~~~----~~-~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14272 169 ILLMD---EPTSALDPASTARIEDLMTDL----KK-VTTIII-VTHNMHQAARVSDTT-SFFLVGDLVEHGP 230 (252)
T ss_pred EEEEe---CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999 999999998865544433222 11 122212 239999999999999 8899999876654
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.38 E-value=5.1e-13 Score=122.09 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=90.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~~~-~~~ 87 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.|+. ...
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-----------SPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccccHHhhhheEEeccccccC
Confidence 455667899999999999999999999999999 668999999988765321 1 1344443 122
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
...++.|...+...... .......++.++. --..+.+++++ .+|+++++| ||++++|+...
T Consensus 86 ~~~tv~e~l~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~~ 161 (201)
T cd03231 86 TTLSVLENLRFWHADHS-DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD---EPTTALDKAGV 161 (201)
T ss_pred CCcCHHHHHHhhccccc-HHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHH
Confidence 22333333222111000 0000011111100 00115567777 799999999 99999999886
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri 191 (394)
+.....+..+ ..-...+.. .+|+.......|+++
T Consensus 162 ~~l~~~l~~~----~~~g~tiii-~sH~~~~~~~~~~~~ 195 (201)
T cd03231 162 ARFAEAMAGH----CARGGMVVL-TTHQDLGLSEAGARE 195 (201)
T ss_pred HHHHHHHHHH----HhCCCEEEE-EecCchhhhhcccee
Confidence 5443332211 110111111 238777777777765
No 263
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.38 E-value=1.2e-13 Score=144.25 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--------h--hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--------~--~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|. . |++|.|.++|.++... . ..|.||.
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 370 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRL-----------I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD 370 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeC
Confidence 456778889999999999999999999999998 3 5789999998765321 1 1355555
Q ss_pred c---cccceEEEeccccccccc----CC---CCCchhhhhHHHhh----h-----------hHHhhhhcc-CCCCeEEec
Q 016139 85 A---VPAFLEIHDIAGLVRGAH----EG---QGLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 85 ~---~~~~i~~~D~~gl~~~~~----~~---~~l~~~~l~~l~~~----d-----------~il~vv~a~-~~~~vl~ld 138 (394)
. +...+++.+...+..... .. ......+++.+... + .-+.+++++ .+|+++++|
T Consensus 371 ~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 450 (529)
T PRK15134 371 PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD 450 (529)
T ss_pred chhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 2 333345555433211000 00 00001111111110 0 115567777 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+.+ .....+.. .+|++..+..+|+++ .+|++|+++..++
T Consensus 451 ---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~-vsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 509 (529)
T PRK15134 451 ---EPTSSLDKTVQAQILALLKSLQQ---KHQLAYLF-ISHDLHVVRALCHQV-IVLRQGEVVEQGD 509 (529)
T ss_pred ---CCccccCHHHHHHHHHHHHHHHH---hhCCEEEE-EeCCHHHHHHhcCeE-EEEECCEEEEEcC
Confidence 99999999997666554433321 11122212 249999999999999 8899999876654
No 264
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.38 E-value=2.2e-13 Score=133.85 Aligned_cols=172 Identities=15% Similarity=0.249 Sum_probs=105.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---eeEEecCCcchhhhh-----------hhc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC-----------QLF 80 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l~-----------~~~ 80 (394)
......+..|+++||+|+||||||||+++|+|. ..|+ +|.|.++|.++..+. ..|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl-----------~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~ 101 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-----------LAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEE
Confidence 456678899999999999999999999999999 4454 899999998763221 134
Q ss_pred cCCCc---cccceEEEeccc----ccccccCCC--CCchhhhhHHHhhh-----------------hHHhhhhcc-CCCC
Q 016139 81 KPKSA---VPAFLEIHDIAG----LVRGAHEGQ--GLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPD 133 (394)
Q Consensus 81 ~~~~~---~~~~i~~~D~~g----l~~~~~~~~--~l~~~~l~~l~~~d-----------------~il~vv~a~-~~~~ 133 (394)
.+|.. +...+++.+... ...+..... ......++.++..+ --+.+++|+ .+|+
T Consensus 102 v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~ 181 (330)
T PRK09473 102 IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181 (330)
T ss_pred EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 44442 222222222110 000000000 00001111111000 014566666 7999
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++++| ||++.+|+.....++..+..+.+ +....+.. .+|++..+..+||++ .+|..|+++..++
T Consensus 182 llilD---EPts~LD~~~~~~i~~lL~~l~~---~~g~til~-iTHdl~~~~~~~Dri-~vm~~G~ive~g~ 245 (330)
T PRK09473 182 LLIAD---EPTTALDVTVQAQIMTLLNELKR---EFNTAIIM-ITHDLGVVAGICDKV-LVMYAGRTMEYGN 245 (330)
T ss_pred EEEEe---CCCccCCHHHHHHHHHHHHHHHH---HcCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999 99999999987655544333322 11112212 249999999999999 8999999987765
No 265
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=1.1e-12 Score=120.36 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=100.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~ 86 (394)
-......+.+|++++|+|+||+|||||+++|+|. ..|++|.|.++|.++.... ..|.||...
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 92 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-----------LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT 92 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc
Confidence 3566678899999999999999999999999999 6799999999997653211 135555521
Q ss_pred ccceEEEecccccccccCCCCCchhhhhHHHh----------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHH
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~----------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~ 155 (394)
....++.+...+..... ..+..+.++. .---+.+++++ .+|+++++| ||++++|....+..
T Consensus 93 ~~~~tv~~~l~~~~~~~-----~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~~l 164 (207)
T cd03369 93 LFSGTIRSNLDPFDEYS-----DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLD---EATASIDYATDALI 164 (207)
T ss_pred ccCccHHHHhcccCCCC-----HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHHHH
Confidence 11123333322211100 0001111110 00114566666 799999999 99999999886443
Q ss_pred HhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 156 ~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
...+. +.. . ...+ .-.+|+...+.. |+++ ..|++|++...+
T Consensus 165 ~~~l~---~~~-~-~~ti-ii~th~~~~~~~-~d~v-~~l~~g~i~~~g 205 (207)
T cd03369 165 QKTIR---EEF-T-NSTI-LTIAHRLRTIID-YDKI-LVMDAGEVKEYD 205 (207)
T ss_pred HHHHH---Hhc-C-CCEE-EEEeCCHHHHhh-CCEE-EEEECCEEEecC
Confidence 33221 111 0 1111 112388888765 8988 788888876543
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.4e-13 Score=128.26 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=105.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------hh--hhccCCCc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKSA 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~--~~~~~~~~ 85 (394)
-......+.+|++++|+|+||||||||+++|+|...... -.|++|.+.++|.++.. .. ..|.||..
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~ 92 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIE------GVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEEcccccchHHHHhheeEEecCC
Confidence 355667889999999999999999999999999831000 01468999999876521 11 24666653
Q ss_pred cccceEEEecccccccccC---CCCCchhhhhHHHhh-------h--------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~---~~~l~~~~l~~l~~~-------d--------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... ...........+... + .-+.+++++ .+|+++++|
T Consensus 93 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 170 (249)
T PRK14253 93 NPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD-- 170 (249)
T ss_pred CcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 2212344443322110000 000000000001100 0 115566776 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|......+...+..+. + ...+.. .+|+...+..+|+++ .+|.+|++...++
T Consensus 171 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tii~-~sh~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (249)
T PRK14253 171 -EPTSALDPIATHKIEELMEELK----K-NYTIVI-VTHSMQQARRISDRT-AFFLMGELVEHDD 227 (249)
T ss_pred -CCCccCCHHHHHHHHHHHHHHh----c-CCeEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999988655544333221 1 112212 239999999999999 8899999876654
No 267
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.37 E-value=7.4e-13 Score=120.41 Aligned_cols=128 Identities=11% Similarity=0.128 Sum_probs=78.6
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh---hhccCCC-ccccceEE
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPAFLEI 92 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~---~~~~~~~-~~~~~i~~ 92 (394)
....+++|++++|+|+||||||||+++|+|. ..|++|.+.++|.++.... ..|.++. ......++
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv 87 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI-----------MQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTV 87 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCH
Confidence 5677889999999999999999999999999 6799999999997654321 1344443 22223344
Q ss_pred EecccccccccCCCCCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHh
Q 016139 93 HDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (394)
Q Consensus 93 ~D~~gl~~~~~~~~~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~ 157 (394)
.|...+.............+++.++. .-..+.+++++ .+|+++++| ||++++|+...+....
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD---EP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 88 FENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD---EVETNLSKENRDLLNN 164 (195)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHHH
Confidence 44332211100000000000011000 01125566776 799999999 9999999988655444
Q ss_pred H
Q 016139 158 D 158 (394)
Q Consensus 158 d 158 (394)
.
T Consensus 165 ~ 165 (195)
T PRK13541 165 L 165 (195)
T ss_pred H
Confidence 3
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.3e-13 Score=128.56 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=104.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------h--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++... . ..|.||..
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF---VP---NCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 456678899999999999999999999999998310 00 015799999999765321 1 13556552
Q ss_pred cccceEEEecccccccccC---C-CCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecC
Q 016139 86 VPAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~---~-~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~ 139 (394)
.....++.|...+...... . ........+.++..+ .-+.+++++ .+|+++++|
T Consensus 96 ~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD- 174 (251)
T PRK14244 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD- 174 (251)
T ss_pred ccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 1111133333322110000 0 000000001111111 114567777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+ .+ ...+.. .+|+...+..+|+++ .+|++|+++..++
T Consensus 175 --EPt~~LD~~~~~~l~~~l~~~----~~-~~tiii-isH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (251)
T PRK14244 175 --EPCSALDPVATNVIENLIQEL----KK-NFTIIV-VTHSMKQAKKVSDRV-AFFQSGRIVEYNT 231 (251)
T ss_pred --CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EeCCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 999999998875554433222 11 122212 239999999999999 8899999876654
No 269
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2e-13 Score=128.87 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=104.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CceeEEecCCcchhhh-------h--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEWL-------C--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v~g~~~~~l-------~--~~~~~~ 83 (394)
......+..|+++||+|+||||||||+++|+|.... .. |++|.|.++|.++... . ..|.||
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~--------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 91 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL--------IPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQ 91 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc--------cCCCCCceEEEECCEecccccccHHHHhhheEEEec
Confidence 345567899999999999999999999999986210 12 3589999998765321 1 245565
Q ss_pred CccccceEEEeccccccccc---CCCCC---chhhhhHHHhh------------------hhHHhhhhcc-CCCCeEEec
Q 016139 84 SAVPAFLEIHDIAGLVRGAH---EGQGL---GNSFLSHIRAV------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 84 ~~~~~~i~~~D~~gl~~~~~---~~~~l---~~~~l~~l~~~------------------d~il~vv~a~-~~~~vl~ld 138 (394)
.......++.|...+..... ..... ....++.++.. -.-+.+++++ .+|+++++|
T Consensus 92 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 171 (250)
T PRK14245 92 RPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 52211123334332211000 00000 00111111100 0114566776 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.....+..+. + ...+.. .+|+...+.++||++ .+|++|+++..++
T Consensus 172 ---EPt~~LD~~~~~~l~~~l~~~~----~-~~tiii-vtH~~~~~~~~~d~v-~~l~~G~~~~~~~ 228 (250)
T PRK14245 172 ---EPASALDPISTAKVEELIHELK----K-DYTIVI-VTHNMQQAARVSDKT-AFFYMGEMVEYDD 228 (250)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHh----c-CCeEEE-EeCCHHHHHhhCCEE-EEEECCEEEEECC
Confidence 9999999998765544433221 1 112212 249999999999999 8899999887764
No 270
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.2e-13 Score=127.58 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=104.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----eeEEecCCcchhh-------hh--hhc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LC--QLF 80 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-----~G~i~v~g~~~~~-------l~--~~~ 80 (394)
......+.+|+++||+|+||||||||+++|+|. ..|+ +|.|.++|.++.. +. ..|
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~ 89 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRM-----------NDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGM 89 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCccccCCcccEEEECCEEccccccChHHhhceEEE
Confidence 455677899999999999999999999999998 3444 6999998876531 11 145
Q ss_pred cCCCccccceEEEecccccccc---cCCCCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeE
Q 016139 81 KPKSAVPAFLEIHDIAGLVRGA---HEGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 81 ~~~~~~~~~i~~~D~~gl~~~~---~~~~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl 135 (394)
.||.......++.|...+.... .........+...++..+ -.+.+++++ .+|+++
T Consensus 90 v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 90 VFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred EecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5665321112444433222110 000000001100011100 115567777 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++++|....+.....+..+ .. ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 170 lLD---EPt~~LD~~~~~~l~~~l~~~----~~-~~tili-vsh~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14249 170 LMD---EPCSALDPVSTMRIEELMQEL----KQ-NYTIAI-VTHNMQQAARASDWT-GFLLTGDLVEYGR 229 (251)
T ss_pred EEe---CCCccCCHHHHHHHHHHHHHH----hc-CCEEEE-EeCCHHHHHhhCCEE-EEEeCCeEEEeCC
Confidence 999 999999999875544433222 11 112212 249999999999999 8889998876654
No 271
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.5e-13 Score=128.85 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=104.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~- 84 (394)
......+.+|+++||+|+||||||||+++|+|...+ .| ..|++|.|.++|.++.. .. ..|.++.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~---~~---~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV---IP---GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc---cc---CCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 456678899999999999999999999999998310 00 01479999999876521 11 1345554
Q ss_pred ccccceEEEecccccccccC---CCC---CchhhhhHHHh-------hh-----------hHHhhhhcc-CCCCeEEecC
Q 016139 85 AVPAFLEIHDIAGLVRGAHE---GQG---LGNSFLSHIRA-------VD-----------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~---~~~---l~~~~l~~l~~-------~d-----------~il~vv~a~-~~~~vl~ld~ 139 (394)
......++.|...+...... ... ....+++.+.. .+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD- 173 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD- 173 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 22223444444322110000 000 00111111100 00 115567777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc------CCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ------DGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~------~g~~~~~~~ 205 (394)
||++++|..........+..+.+ ...+.. .+|+...+..+|+++ .+|+ +|+++..++
T Consensus 174 --EPt~~LD~~~~~~l~~~l~~~~~-----~~tvii-vsH~~~~~~~~~d~i-~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 174 --EPCSALDPISTLAIEDLINELKQ-----DYTIVI-VTHNMQQAARVSDQT-AFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred --CCCccCCHHHHHHHHHHHHHHhc-----CCEEEE-EecCHHHHHHhCCEE-EEEecccCCCCceEEecCC
Confidence 99999999987555444332211 112212 249999999999998 6665 688776654
No 272
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.37 E-value=5.3e-13 Score=120.76 Aligned_cols=130 Identities=17% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.+|..
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-----------LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 456678999999999999999999999999999 67999999999876531 11 13555552
Q ss_pred --cccceEEEecccccccccC-C-CCC---chhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 --VPAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~~-~-~~l---~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.....++.|...+...... . ... ....++.+...+ ..+.+++++ .+|+++++| ||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 154 (190)
T TIGR01166 78 DDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD---EP 154 (190)
T ss_pred hhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 1112344443322110000 0 000 000111110000 115567777 899999999 99
Q ss_pred cchHHHHHHHHHHhH
Q 016139 144 VRDLEVISAELRLKD 158 (394)
Q Consensus 144 ~~~ld~i~~el~~~d 158 (394)
++++|....+.....
T Consensus 155 t~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 155 TAGLDPAGREQMLAI 169 (190)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999886554443
No 273
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.3e-13 Score=129.42 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=105.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+++|+++||+|+||||||||+++|+|...+..+ .|++|.|.++|.++.. .. ..|.||..
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~------~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG------FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC------CCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 556778899999999999999999999999998321000 0378999999976531 11 14555553
Q ss_pred cccceEEEecccccccccC-CCC---CchhhhhHHHh------------------hhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQG---LGNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~---l~~~~l~~l~~------------------~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.|+..+...... ... .....++.+.. --.-+.+++|+ .+|+++++| |
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---E 175 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD---E 175 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 2223444444332210000 000 00011111000 00114567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc--------CCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--------DGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~--------~g~~~~~~~ 205 (394)
|++++|..........+..+. + ...+ .-.+|+...+..+||++ .+|+ +|+++..++
T Consensus 176 PtsgLD~~~~~~l~~~l~~~~----~-~~ti-i~isH~~~~i~~~~d~v-~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 176 PCSALDPIATRRVEELMVELK----K-DYTI-ALVTHNMQQAIRVADTT-AFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred CCccCCHHHHHHHHHHHHHHh----c-CCeE-EEEeCCHHHHHHhCCEE-EEEecccccccCCceEEEeCC
Confidence 999999998765544433221 1 1122 12249999999999999 7775 788876654
No 274
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.37 E-value=2.3e-13 Score=146.78 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=109.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
.....++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||....
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-----------FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 445667889999999999999999999999999 67999999999988765331 577777544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh-------------h---------------hHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------d---------------~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+.-+........ .++.+.++.+ | --+.++||+ .+|+++++|
T Consensus 560 f~gTI~eNi~l~~~~~~~~---~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD 636 (708)
T TIGR01193 560 FSGSILENLLLGAKENVSQ---DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD 636 (708)
T ss_pred hhHHHHHHHhccCCCCCCH---HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 4445555554431110000 0011111110 0 115677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..+++.+...+. + +. .+++ .-.+|....+ ..||++ ..|++|+++..|+.
T Consensus 637 ---E~Ts~LD~~te~~i~~~L~---~-~~--~~T~-IiitHr~~~~-~~~D~i-~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 637 ---ESTSNLDTITEKKIVNNLL---N-LQ--DKTI-IFVAHRLSVA-KQSDKI-IVLDHGKIIEQGSH 692 (708)
T ss_pred ---CccccCCHHHHHHHHHHHH---H-hc--CCEE-EEEecchHHH-HcCCEE-EEEECCEEEEECCH
Confidence 9999999988755433322 1 10 1111 2224888765 569999 88999999877763
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.37 E-value=6.6e-13 Score=121.60 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++. ...
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-----------ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIK 86 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccchHHhhhheEEeCCccccC
Confidence 456678899999999999999999999999999 6799999999987653211 1234433 222
Q ss_pred cceEEEecccccccccC--CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 88 AFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~--~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
..+++.|...+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++++|+.
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~ 163 (204)
T PRK13538 87 TELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD---EPFTAIDKQ 163 (204)
T ss_pred cCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCHH
Confidence 23344444332211110 0000011111111100 115566776 899999999 999999999
Q ss_pred HHHHHHhH
Q 016139 151 SAELRLKD 158 (394)
Q Consensus 151 ~~el~~~d 158 (394)
..+.....
T Consensus 164 ~~~~l~~~ 171 (204)
T PRK13538 164 GVARLEAL 171 (204)
T ss_pred HHHHHHHH
Confidence 87555433
No 276
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=2.3e-13 Score=133.76 Aligned_cols=176 Identities=12% Similarity=0.153 Sum_probs=105.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----------hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----------~~~~~~ 83 (394)
......+.+|+++||+|+||||||||+++|+|.... ...|++|.|.++|+++..+. ..|.+|
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~-------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD-------NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 455678899999999999999999999999998320 01368999999997653211 134555
Q ss_pred Cc---cccceEEEeccccc------ccc--cC---CCCCchhhhhHHHhhh-----------------hHHhhhhcc-CC
Q 016139 84 SA---VPAFLEIHDIAGLV------RGA--HE---GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-ED 131 (394)
Q Consensus 84 ~~---~~~~i~~~D~~gl~------~~~--~~---~~~l~~~~l~~l~~~d-----------------~il~vv~a~-~~ 131 (394)
.. ....+++.+..... .+. .. .......+++.++..+ --+.+++|+ .+
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 42 12222222221100 000 00 0000011111111110 014567777 89
Q ss_pred CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+++++| ||++.+|+.....++..+..+.+ +....+ .-.+|++..+..+||++ .+|.+|+++..++
T Consensus 177 P~llilD---EPts~LD~~~~~~i~~lL~~l~~---~~g~ti-i~itHdl~~v~~~~dri-~vm~~G~ive~g~ 242 (330)
T PRK15093 177 PRLLIAD---EPTNAMEPTTQAQIFRLLTRLNQ---NNNTTI-LLISHDLQMLSQWADKI-NVLYCGQTVETAP 242 (330)
T ss_pred CCEEEEe---CCCCcCCHHHHHHHHHHHHHHHH---hcCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999 99999999886544443332211 111122 12249999999999999 8999999987764
No 277
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.36 E-value=3.4e-13 Score=142.47 Aligned_cols=165 Identities=18% Similarity=0.264 Sum_probs=109.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+....++++|++++|+|++|||||||+++|+|. . |++|.|.++|.++..+. -.|.||+..-
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-----------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-----------L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL 434 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC
Confidence 344567789999999999999999999999999 6 88999999998765432 1578887554
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh-------------h---------------hHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------d---------------~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+.-+.......+ ++.+.++.+ | --+.++||+ .+|+++++|
T Consensus 435 F~~TI~eNI~~g~~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLD 510 (588)
T PRK11174 435 PHGTLRDNVLLGNPDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLD 510 (588)
T ss_pred CCcCHHHHhhcCCCCCCHH----HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5556666665542211100 111111110 1 015677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+..+ .. .+++ .-.+|....+ ..+|+| ..|++|+++..|+.
T Consensus 511 ---E~TSaLD~~te~~i~~~l~~~---~~--~~Tv-IiItHrl~~i-~~aD~I-ivl~~G~i~e~G~~ 567 (588)
T PRK11174 511 ---EPTASLDAHSEQLVMQALNAA---SR--RQTT-LMVTHQLEDL-AQWDQI-WVMQDGQIVQQGDY 567 (588)
T ss_pred ---CCccCCCHHHHHHHHHHHHHH---hC--CCEE-EEEecChHHH-HhCCEE-EEEeCCeEeecCCH
Confidence 999999999975544322111 00 0111 1224888665 458998 88899998877753
No 278
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.36 E-value=3.1e-13 Score=127.90 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=96.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccce--E
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFL--E 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i--~ 91 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+ +
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~----~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKL----RIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCcc----CEEEeccccccccccChh
Confidence 345677899999999999999999999999999 67999999987631 123444431 11111 1
Q ss_pred EEecccccccccCCCCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 92 ~~D~~gl~~~~~~~~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
+.+...+...... .....+++.+... -.-+.+++++ .+|+++++| ||++++|+...+...
T Consensus 86 ~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l~ 160 (251)
T PRK09544 86 VNRFLRLRPGTKK--EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD---EPTQGVDVNGQVALY 160 (251)
T ss_pred HHHHHhccccccH--HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHHH
Confidence 1111111000000 0000011111000 0114566666 799999999 999999998865544
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..+..+. ......+.. .+|+...+..+|+++ .+|+ ++++..++
T Consensus 161 ~~L~~~~---~~~g~tiii-vsH~~~~i~~~~d~i-~~l~-~~i~~~g~ 203 (251)
T PRK09544 161 DLIDQLR---RELDCAVLM-VSHDLHLVMAKTDEV-LCLN-HHICCSGT 203 (251)
T ss_pred HHHHHHH---HhcCCEEEE-EecCHHHHHHhCCEE-EEEC-CceEeeCC
Confidence 4332211 111112212 249999999999999 6675 46655554
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.36 E-value=2.7e-13 Score=144.38 Aligned_cols=167 Identities=15% Similarity=0.258 Sum_probs=100.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCC--ccccceEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS--AVPAFLEI 92 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~--~~~~~i~~ 92 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.+ |.++ ...|.+|. .++...++
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~-~~~~---~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-----------LQADSGRIHC-GTKL---EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCCc---EEEEEeCcccccCCCCCH
Confidence 345567889999999999999999999999998 6799999988 4332 12344442 12233344
Q ss_pred Eeccccccccc--CC-CCCchhhhhHH-----------Hhh----hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHH
Q 016139 93 HDIAGLVRGAH--EG-QGLGNSFLSHI-----------RAV----DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (394)
Q Consensus 93 ~D~~gl~~~~~--~~-~~l~~~~l~~l-----------~~~----d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~e 153 (394)
.|...+..... .. ......++..+ ... -.-+.+++++ .+|+++++| ||++++|+...+
T Consensus 401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD---EPt~~LD~~~~~ 477 (635)
T PRK11147 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD---EPTNDLDVETLE 477 (635)
T ss_pred HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHH
Confidence 44322211000 00 00000001100 000 0114566666 799999999 999999999864
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc-CCCcee-cCCCCh
Q 016139 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-DGKDVR-LGDWKA 208 (394)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~-~g~~~~-~~~~~~ 208 (394)
.+.. .+..+...+.. .+|+...+..+|+++ .++. +|++.. .|++++
T Consensus 478 ~l~~-------~l~~~~~tvi~-vSHd~~~~~~~~d~i-~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 478 LLEE-------LLDSYQGTVLL-VSHDRQFVDNTVTEC-WIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHH-------HHHhCCCeEEE-EECCHHHHHHhcCEE-EEEeCCCeEEEccCCHHH
Confidence 4332 22222222212 249999999999999 6776 788764 477664
No 280
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=2.7e-13 Score=130.68 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=102.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------h--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .+..|++|.|.++|.++... . ..|.||..
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~------~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL------IDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc------ccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 344567889999999999999999999999998310 00016899999998765311 1 13555542
Q ss_pred cccceEEEecccccccccC-CCCCchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.|...+...... ......+....++.. -..+.+++++ .+|+++++| |
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD---E 206 (285)
T PRK14254 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD---E 206 (285)
T ss_pred ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 1111133333221100000 000000000111111 0115566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|....+.+...+..+.+ . ..+ .-.+|+...+..+|+++..+|++|+++..++
T Consensus 207 Pts~LD~~~~~~l~~~L~~~~~---~--~ti-ii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 207 PASALDPVATSKIEDLIEELAE---E--YTV-VIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc---C--CEE-EEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 9999999987655444332211 1 122 2224999999999999735678999876654
No 281
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.36 E-value=5.7e-13 Score=136.30 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=98.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.... .. +.+ .....+++.+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~-i~--~~~--~l~~~lTV~E 104 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAAL-IA--ISS--GLNGQLTGIE 104 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeee-EE--ecc--ccCCCCcHHH
Confidence 445667899999999999999999999999999 6799999999885410 00 000 0011122222
Q ss_pred cccccc---cccCCC--CCchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHH
Q 016139 95 IAGLVR---GAHEGQ--GLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (394)
Q Consensus 95 ~~gl~~---~~~~~~--~l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el 154 (394)
...+.. +..... ......++.+.. --..+.+++|+ .+|+++++| ||++++|+.....
T Consensus 105 nL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD---EPTsgLD~~sr~~ 181 (549)
T PRK13545 105 NIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID---EALSVGDQTFTKK 181 (549)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHHH
Confidence 211100 000000 000000000000 00114556666 799999999 9999999998655
Q ss_pred HHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 155 ~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+...+..+. .-...+.. .+|++..+..+|+++ .+|.+|++...++
T Consensus 182 LlelL~el~----~~G~TIII-VSHdl~~i~~l~DrI-ivL~~GkIv~~G~ 226 (549)
T PRK13545 182 CLDKMNEFK----EQGKTIFF-ISHSLSQVKSFCTKA-LWLHYGQVKEYGD 226 (549)
T ss_pred HHHHHHHHH----hCCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 444332221 11112212 249999999999999 8899999876654
No 282
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3e-13 Score=127.91 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=104.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-------h--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-------~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..+++|.|.++|.++... . ..|.+|..
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL---IP---GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC---CC---CCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 445577899999999999999999999999997310 00 012589999998765321 1 13555552
Q ss_pred cccceEEEecccccccccC--CC-CCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~-~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... .. .......+.++..+ .-+.+++++ .+|+++++|
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD-- 174 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD-- 174 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 1111244443332211100 00 00000001111110 114566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+.+ ...+.. .+|+...+.++|+++ .+|++|+++..++
T Consensus 175 -EP~~gLD~~~~~~l~~~l~~~~~-----~~tvii-~sh~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14261 175 -EPCSALDPIATAKIEDLIEDLKK-----EYTVII-VTHNMQQAARVSDYT-GFMYLGKLIEFDK 231 (253)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhh-----CceEEE-EEcCHHHHHhhCCEE-EEEECCEEEEcCC
Confidence 99999999987655444332211 112212 239999999999999 8899999876654
No 283
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.4e-13 Score=129.38 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSAV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~~ 86 (394)
......+.+|++++|+|+||||||||+++|+|...+.+ -.|++|.|.++|.++... . ..|.||...
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVS------GYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCC------CCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 44567788999999999999999999999999831000 014799999998765321 1 136666532
Q ss_pred ccceEEEecccccccccC--C-CCCc---hhhhhHHHhh------------------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 87 PAFLEIHDIAGLVRGAHE--G-QGLG---NSFLSHIRAV------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~--~-~~l~---~~~l~~l~~~------------------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
....++.+...+...... . .... ...+..+... -.-+.+++++ .+|+++++|
T Consensus 112 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD--- 188 (276)
T PRK14271 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD--- 188 (276)
T ss_pred cCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 222344443322110000 0 0000 0001111000 0115567777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.+...+..+. . ...+.. .+|+...+..+|+++ .+|++|++...++
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~----~-~~tiii-vsH~~~~~~~~~dri-~~l~~G~i~~~g~ 245 (276)
T PRK14271 189 EPTSALDPTTTEKIEEFIRSLA----D-RLTVII-VTHNLAQAARISDRA-ALFFDGRLVEEGP 245 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHHh----c-CCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999988655544332221 1 112212 239999999999999 8899999876654
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.36 E-value=9.5e-13 Score=119.94 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=79.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
......+.+|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.++. ..+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-----------LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLK 85 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccchHHhhhheEEeccCcccc
Confidence 455677899999999999999999999999999 6789999999987653221 1345544 222
Q ss_pred cceEEEecccccccccCCCC-CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 88 AFLEIHDIAGLVRGAHEGQG-LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~-l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
...++.|...+......... .....++.++..+ ..+.+++++ .+|+++++| ||++++|...
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~~ 162 (198)
T TIGR01189 86 PELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD---EPTTALDKAG 162 (198)
T ss_pred cCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHH
Confidence 23444454433211111000 0001111111100 115567777 899999999 9999999987
Q ss_pred HHHH
Q 016139 152 AELR 155 (394)
Q Consensus 152 ~el~ 155 (394)
.+..
T Consensus 163 ~~~l 166 (198)
T TIGR01189 163 VALL 166 (198)
T ss_pred HHHH
Confidence 5443
No 285
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.36 E-value=3.3e-13 Score=141.99 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=114.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....+++|+++||+||+||||||+++.|.+. .+|++|.|.++|.++..... .+.||...-
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 456667899999999999999999999999999 68999999999988764332 467777544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh-------------h---------------hHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------d---------------~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+....... .+..+.++.+ | -.+.++||+ .+|+++++|
T Consensus 415 F~~TI~~NI~~g~~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 415 FSGTIRENIALGRPDATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred ecccHHHHHhcCCCCCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 445666666555331100 0111111111 1 115677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|..++..+...+..+.+. ++... .+|.+..+.. ||+| .+|++|+++..|+-+
T Consensus 491 ---EaTSalD~~tE~~I~~~l~~l~~~-----rT~ii-IaHRlsti~~-aD~I-iVl~~G~i~e~G~h~ 548 (567)
T COG1132 491 ---EATSALDTETEALIQDALKKLLKG-----RTTLI-IAHRLSTIKN-ADRI-IVLDNGRIVERGTHE 548 (567)
T ss_pred ---ccccccCHHhHHHHHHHHHHHhcC-----CEEEE-EeccHhHHHh-CCEE-EEEECCEEEEecCHH
Confidence 999999999986655543311110 11111 2399988877 9999 999999988777643
No 286
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.36 E-value=3.7e-13 Score=123.12 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=88.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......++.|++++|+|+||||||||+++|+|. ..|++|.|.++| ++ .|.|+.......++.|
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-----------~~~~~G~i~~~g-~i-----~~~~q~~~l~~~t~~e 84 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-----------LEKLSGSVSVPG-SI-----AYVSQEPWIQNGTIRE 84 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCCeEEEcC-EE-----EEEecCchhccCcHHH
Confidence 456678899999999999999999999999999 679999999987 22 2333331111122222
Q ss_pred cccccccccCCC--------CCchhhhh---------------HH-HhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 95 IAGLVRGAHEGQ--------GLGNSFLS---------------HI-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 95 ~~gl~~~~~~~~--------~l~~~~l~---------------~l-~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
...+........ ++. .++. .+ ...-.-+.+++++ .+|+++++| ||++++|+
T Consensus 85 nl~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD---EP~~~LD~ 160 (204)
T cd03250 85 NILFGKPFDEERYEKVIKACALE-PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD---DPLSAVDA 160 (204)
T ss_pred HhccCCCcCHHHHHHHHHHcCcH-HHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CccccCCH
Confidence 222211000000 000 0000 00 0000114566666 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
...+.....+ +.+.... ...+ .-.+|+...+.. |+++ ..|++|
T Consensus 161 ~~~~~l~~~l--l~~~~~~-~~tv-i~~sh~~~~~~~-~d~i-~~l~~G 203 (204)
T cd03250 161 HVGRHIFENC--ILGLLLN-NKTR-ILVTHQLQLLPH-ADQI-VVLDNG 203 (204)
T ss_pred HHHHHHHHHH--HHHhccC-CCEE-EEEeCCHHHHhh-CCEE-EEEeCC
Confidence 8754332211 0111010 1111 112388887776 8877 555555
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.35 E-value=2.5e-13 Score=146.26 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=109.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||....
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-----------YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence 455677889999999999999999999999999 67999999999987765331 477777544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+....... .++.+.++.+ ---+.++||+ .+|+++++|
T Consensus 551 f~~TI~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 551 FYGTLRDNIALGAPYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred hhhhHHHHHhCCCCCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444555555443221100 0000111100 0125677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+..+ .. .+++ .-.+|....+ ..||+| ..|++|+++..|+.
T Consensus 627 ---E~Ts~LD~~te~~i~~~l~~~---~~--~~T~-iiItHrl~~~-~~~D~i-ivl~~G~i~e~G~~ 683 (694)
T TIGR03375 627 ---EPTSAMDNRSEERFKDRLKRW---LA--GKTL-VLVTHRTSLL-DLVDRI-IVMDNGRIVADGPK 683 (694)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHH---hC--CCEE-EEEecCHHHH-HhCCEE-EEEeCCEEEeeCCH
Confidence 999999999875543332111 10 0111 1124888765 579999 88999999877753
No 288
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.35 E-value=1.3e-12 Score=135.56 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=105.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ceeEEecCCcchhh------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~~~~------l~--~~~~~~~~ 85 (394)
......+..|+++||+|+||||||||+++|+|. ..| ++|.|.++|+++.. +. ..|.||..
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGA-----------YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence 445667899999999999999999999999999 564 79999999876531 11 14556552
Q ss_pred ----cccceEEEecccccc--cccC----CC----CCchhhhhHHHhhh---------------hHHhhhhcc-CCCCeE
Q 016139 86 ----VPAFLEIHDIAGLVR--GAHE----GQ----GLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ----~~~~i~~~D~~gl~~--~~~~----~~----~l~~~~l~~l~~~d---------------~il~vv~a~-~~~~vl 135 (394)
....+++.+...+.. .... .. .....+++.+...+ .-+.+++++ .+|+++
T Consensus 346 ~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 425 (500)
T TIGR02633 346 KRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVL 425 (500)
T ss_pred hhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 233333333322210 0000 00 00011111111110 114566776 789999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
++| ||++++|+...+.+...+..+.+ ....+.. .+|++..+..+|+++ .+|.+|+++...
T Consensus 426 lLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvii-vsHd~~~~~~~~d~v-~~l~~G~i~~~~ 485 (500)
T TIGR02633 426 ILD---EPTRGVDVGAKYEIYKLINQLAQ----EGVAIIV-VSSELAEVLGLSDRV-LVIGEGKLKGDF 485 (500)
T ss_pred EEc---CCCCCcCHhHHHHHHHHHHHHHh----CCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEE
Confidence 999 99999999987665544332211 1112212 249999999999999 788999987654
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.8e-13 Score=135.48 Aligned_cols=173 Identities=18% Similarity=0.253 Sum_probs=113.2
Q ss_pred CCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCC
Q 016139 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS 84 (394)
Q Consensus 12 ~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~ 84 (394)
+.-......+++|+.++|||++|||||||+++|+|. ..|++|+|.++|.++..+.. .|.||+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-----------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-----------LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 344566777899999999999999999999999999 67899999999988765542 466766
Q ss_pred ccccceEEEecccccccccCCC-------------------CCchhhhh-----HHHhhhhHHhhhhcc-CCCCeEEecC
Q 016139 85 AVPAFLEIHDIAGLVRGAHEGQ-------------------GLGNSFLS-----HIRAVDGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~~~-------------------~l~~~~l~-----~l~~~d~il~vv~a~-~~~~vl~ld~ 139 (394)
..-..-++.|+..+.+.....+ ++.....+ ...++ --+.++||+ .+++++++|
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~-QRlaLARAll~~~~l~llD- 481 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA-QRLALARALLSPASLLLLD- 481 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH-HHHHHHHHhcCCCCEEEec-
Confidence 4433344445444433211000 00000000 00000 114677887 788999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||+.++|..+++++...+..+.+. +++ .-.+|.+... .-+|+| ..|++|+++..|..+
T Consensus 482 --EpTA~LD~etE~~i~~~l~~l~~~-----ktv-l~itHrl~~~-~~~D~I-~vld~G~l~~~g~~~ 539 (559)
T COG4988 482 --EPTAHLDAETEQIILQALQELAKQ-----KTV-LVITHRLEDA-ADADRI-VVLDNGRLVEQGTHE 539 (559)
T ss_pred --CCccCCCHhHHHHHHHHHHHHHhC-----CeE-EEEEcChHHH-hcCCEE-EEecCCceeccCCHH
Confidence 999999999988776654433221 122 1223877654 457888 889999998877543
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.7e-13 Score=139.57 Aligned_cols=169 Identities=16% Similarity=0.225 Sum_probs=104.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC-c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-A 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~-~ 85 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|. .
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGN-----------YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH 89 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh
Confidence 456678899999999999999999999999999 668999999998765311 1 1355554 2
Q ss_pred cccceEEEeccccccccc-CC----CC---CchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAH-EG----QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~-~~----~~---l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.+..+++.|...+..... .+ .. ....+++.+... -.-+.+++++ .+|+++++| |
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---E 166 (501)
T PRK11288 90 LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD---E 166 (501)
T ss_pred ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---C
Confidence 222334444333211000 00 00 000011111100 0114566666 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
|++++|+...+.+...+..+. +....+ .-.+|+...+..+|+++ .+|++|+++..
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~----~~g~ti-iiitHd~~~~~~~~d~i-~~l~~G~i~~~ 221 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELR----AEGRVI-LYVSHRMEEIFALCDAI-TVFKDGRYVAT 221 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----hCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEee
Confidence 999999998655544332221 111122 12249999999999999 88999998754
No 291
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.35 E-value=2.2e-13 Score=157.66 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=110.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----h--hhccCCC-cccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS-AVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~--~~~~~~~-~~~~ 88 (394)
.....+..|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||. ....
T Consensus 948 ~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-----------l~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~ 1016 (2272)
T TIGR01257 948 RLNITFYENQITAFLGHNGAGKTTTLSILTGL-----------LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016 (2272)
T ss_pred eeEEEEcCCcEEEEECCCCChHHHHHHHHhcC-----------CCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCC
Confidence 34566789999999999999999999999999 679999999999776321 1 1466665 3344
Q ss_pred ceEEEecccccccccC--CCC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~--~~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|...+...... ... ...++++.++..+ --+.+++|+ .+|+++++| ||++++|
T Consensus 1017 ~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD---EPTSGLD 1093 (2272)
T TIGR01257 1017 HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD---EPTSGVD 1093 (2272)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCC
Confidence 4555555433211100 000 0011111111111 115567777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.....+...+..+ .+ ...+.. ++|++++++.+|||+ .+|.+|+++..|+
T Consensus 1094 p~sr~~l~~lL~~l----~~-g~TIIl-tTHdmdea~~laDrI-~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1094 PYSRRSIWDLLLKY----RS-GRTIIM-STHHMDEADLLGDRI-AIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHHHHHHHHHH----hC-CCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99975554443322 11 122212 249999999999999 8999999987765
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.35 E-value=1.2e-12 Score=135.74 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=105.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ceeEEecCCcchhhh--------hhhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p--~~G~i~v~g~~~~~l--------~~~~~~~~ 84 (394)
......+..|+++||+|+||||||||+++|+|. ..| ++|.|.++|.++... ...|.||.
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 86 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-----------YPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQE 86 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeec
Confidence 456778899999999999999999999999998 444 799999998765321 11355655
Q ss_pred -ccccceEEEeccccccccc------CCCC---CchhhhhHHHh-----------h----hhHHhhhhcc-CCCCeEEec
Q 016139 85 -AVPAFLEIHDIAGLVRGAH------EGQG---LGNSFLSHIRA-----------V----DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~------~~~~---l~~~~l~~l~~-----------~----d~il~vv~a~-~~~~vl~ld 138 (394)
..+..+++.|...+..... .... ....+++.+.. . -.-+.+++++ .+|+++++|
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD 166 (500)
T TIGR02633 87 LTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD 166 (500)
T ss_pred cccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 2233344444332211000 0000 00011111100 0 0114566776 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.....+...+..+. .....+.. .+|+...+..+||++ .+|++|+++..++
T Consensus 167 ---EPt~~LD~~~~~~l~~~l~~l~----~~g~tvii-itHd~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (500)
T TIGR02633 167 ---EPSSSLTEKETEILLDIIRDLK----AHGVACVY-ISHKLNEVKAVCDTI-CVIRDGQHVATKD 224 (500)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHH----hCCCEEEE-EeCcHHHHHHhCCEE-EEEeCCeEeeecC
Confidence 9999999998755544332221 11112212 249999999999999 8899999876654
No 293
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.35 E-value=4.6e-13 Score=140.58 Aligned_cols=166 Identities=17% Similarity=0.231 Sum_probs=102.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i~~~ 93 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+++.
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGI----KVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEecCCCCCCCCcHH
Confidence 566778899999999999999999999999999 67899999876421 123444442 22233444
Q ss_pred ecccccccc---------------cCC-C----------------------CCchh---hhhHHH-------------hh
Q 016139 94 DIAGLVRGA---------------HEG-Q----------------------GLGNS---FLSHIR-------------AV 119 (394)
Q Consensus 94 D~~gl~~~~---------------~~~-~----------------------~l~~~---~l~~l~-------------~~ 119 (394)
|...+.... ... . ....+ .+..++ .-
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGq 168 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHH
Confidence 433221000 000 0 00000 000000 00
Q ss_pred hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 120 d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
-..+.+++++ .+|+++++| ||++++|+...+.+... +..+...+.. .+|+...+..+|+++ .+|++|
T Consensus 169 kqrv~la~al~~~p~vlLLD---EPt~~LD~~~~~~l~~~-------L~~~~~tvii-isHd~~~~~~~~d~i-~~l~~g 236 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLD---EPTNHLDAESVAWLEQF-------LHDYPGTVVA-VTHDRYFLDNVAGWI-LELDRG 236 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEc---CCCCcCChHHHHHHHHH-------HHhCCCeEEE-EeCCHHHHHhhcCeE-EEEeCC
Confidence 0124566666 799999999 99999999986443332 2222122212 249999999999999 889999
Q ss_pred Cce-ecCCCC
Q 016139 199 KDV-RLGDWK 207 (394)
Q Consensus 199 ~~~-~~~~~~ 207 (394)
+++ +.++++
T Consensus 237 ~i~~~~g~~~ 246 (556)
T PRK11819 237 RGIPWEGNYS 246 (556)
T ss_pred EEEEecCCHH
Confidence 876 556654
No 294
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.4e-13 Score=129.26 Aligned_cols=177 Identities=17% Similarity=0.133 Sum_probs=103.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+++|+++||+|+||||||||+++|+|...+ .. .-+..|.|.++|.++.. .. ..|.++..
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----~g-~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-----ES-EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC-----CC-CccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 556678899999999999999999999999999320 00 01247899988876521 11 13445542
Q ss_pred cccceEEEecccccccccC--C----CCCchhhhhHHHh------------------hhhHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--G----QGLGNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~----~~l~~~~l~~l~~------------------~d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... . .......++.+.. --..+.+++++ .+|+++++|
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD-- 175 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD-- 175 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 1112344443322110000 0 0000001111100 00114566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-----GKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~-----g~~~~~~~ 205 (394)
||++++|+...+.....+..+.+ .....+.. .+|+...+..+|+++ .+|++ |+++..++
T Consensus 176 -EP~~~LD~~~~~~l~~~l~~l~~---~~~~tiii-vsH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 176 -EPCFGLDPIASMKVESLIQSLRL---RSELTMVI-VSHNLHQVSRLSDFT-AFFKGNENRIGQLVEFGL 239 (261)
T ss_pred -CCCccCCHHHHHHHHHHHHHHHH---hCCCEEEE-EECCHHHHHHhcCEE-EEEccCCCcCceEEEeCC
Confidence 99999999987555443332211 00112212 249999999999999 88888 88876654
No 295
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.34 E-value=5.9e-13 Score=140.78 Aligned_cols=170 Identities=17% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----h--hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~ 87 (394)
.....++++|+++||+|++|||||||+++|+|. .+|++|.|.++|.++..+. . .|.||...-
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-----------YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 455678899999999999999999999999999 6799999999998876432 1 577777444
Q ss_pred cceEEEecccccccccCCC--------CCchhhhhHH-Hhhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQ--------GLGNSFLSHI-RAVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~--------~l~~~~l~~l-~~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+ ++ .++.+.+ ...| --+.++||+ .+|+++++| |
T Consensus 427 F~~Ti~~NI~~~~~~~d~~i~~a~~~~gl-~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD---E 502 (592)
T PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQL-AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD---E 502 (592)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHcCc-HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe---C
Confidence 3345555554433111000 00 0000000 0000 014567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|++.+|..++..+...+..+ .. .+++ .-.+|....+. .||+| ..|++|+++..|+.+
T Consensus 503 pts~LD~~t~~~i~~~l~~~---~~--~~tv-IivtHr~~~l~-~~D~i-i~l~~G~i~~~G~~~ 559 (592)
T PRK10790 503 ATANIDSGTEQAIQQALAAV---RE--HTTL-VVIAHRLSTIV-EADTI-LVLHRGQAVEQGTHQ 559 (592)
T ss_pred CcccCCHHHHHHHHHHHHHH---hC--CCEE-EEEecchHHHH-hCCEE-EEEECCEEEEEcCHH
Confidence 99999998875443332111 00 0111 12238886654 59999 888999998777543
No 296
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=5.6e-13 Score=126.99 Aligned_cols=175 Identities=14% Similarity=0.192 Sum_probs=103.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh---------hhh--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------WLC--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~---------~l~--~~~~~~ 83 (394)
......+..|++++|+|+||||||||+++|+|... ++|. .|++|.|.++|.++. ... ..|.++
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~---~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPG---NHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCC---CCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 45566789999999999999999999999999831 0010 037899999876542 111 135565
Q ss_pred CccccceEEEeccccccc---ccCCCCCchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEec
Q 016139 84 SAVPAFLEIHDIAGLVRG---AHEGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 84 ~~~~~~i~~~D~~gl~~~---~~~~~~l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld 138 (394)
.......++.|...+... ..............+..+. .-+.+++++ .+|+++++|
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 522111233333322110 0000000001111111110 114566776 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|....+.....+..+ .. ...+ .-.+|+.+.+..+|+++ .+|++|+++..++
T Consensus 187 ---EPt~gLD~~~~~~l~~~l~~l----~~-~~ti-iivth~~~~~~~~~d~i-~~l~~G~i~~~g~ 243 (265)
T PRK14252 187 ---EPTSALDPIATASIEELISDL----KN-KVTI-LIVTHNMQQAARVSDYT-AYMYMGELIEFGA 243 (265)
T ss_pred ---CCCccCCHHHHHHHHHHHHHH----Hh-CCEE-EEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999998865544433222 11 1122 12249999999999999 8889999876654
No 297
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=7.1e-13 Score=128.94 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|+++||+|+||||||||+++|+|.... ++ -.|++|.|.++|.++.. +. ..|.+|..
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~---~~---~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDR---IK---AARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cC---CCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 345567889999999999999999999999998310 00 01689999999876532 11 13566653
Q ss_pred cccceEEEecccccccccC-----------CC---CC-chhhhhHHHhhh---------------------hHHhhhhcc
Q 016139 86 VPAFLEIHDIAGLVRGAHE-----------GQ---GL-GNSFLSHIRAVD---------------------GIFHVLRAF 129 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-----------~~---~l-~~~~l~~l~~~d---------------------~il~vv~a~ 129 (394)
.....++.|...+...... +. .. .......++..+ ..+.+++++
T Consensus 136 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 2111233333322110000 00 00 000011111110 125566777
Q ss_pred -CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 130 -EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 130 -~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.+|+++++| ||++++|+.....+...+..+.+ ...+ .-.+|+...+..+|+++..+|++|+++..++
T Consensus 216 ~~~p~lLLLD---EPtsgLD~~~~~~l~~~L~~~~~-----~~ti-iivtH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 216 AVDPEVILMD---EPASALDPIATSKIEDLIEELAE-----EYTV-VVVTHNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred hcCCCEEEEe---CCcccCCHHHHHHHHHHHHHHhc-----CCEE-EEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 899999999 99999999987555444332211 1122 2224999999999999635679999887654
No 298
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=3.5e-13 Score=129.16 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=103.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+..|++++|+|+||||||||+++|+|..... | ..|+.|.|.++|.++.. .. ..|.||..
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI---P---GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---c---CCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 4455778999999999999999999999999983100 0 00368999999876521 11 13556552
Q ss_pred cccceEEEecccccccccC-CCCCchhhhhHHHhh---------------------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~---------------------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.....++.|...+...... ...........++.+ -..+.+++|+ .+|+++++| |
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD---E 187 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD---E 187 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---C
Confidence 2111233443322110000 000000000000000 0114566776 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc---------CCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~---------~g~~~~~~~~ 206 (394)
|++++|+...+.....+..+.+ ...+.. .+|+...+..+|+++ .+|+ +|+++..++.
T Consensus 188 Pt~~LD~~~~~~l~~~L~~~~~-----~~tiii-~sH~~~~~~~~~d~i-~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 188 PCSALDPISTRQVEELCLELKE-----QYTIIM-VTHNMQQASRVADWT-AFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHhc-----CCEEEE-EeCCHHHHHHhCCEE-EEEecccccccccCceEEEeCCH
Confidence 9999999987655444332211 112212 239999999999999 7776 6887766543
No 299
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.34 E-value=1.8e-13 Score=134.31 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=98.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccceEEEecccccccc
Q 016139 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~i~~~D~~gl~~~~ 102 (394)
|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|. ..+..+++.++..+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF-----------EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh
Confidence 5899999999999999999 6799999999997653221 1355555 233345555554432110
Q ss_pred cC-CC-C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHH
Q 016139 103 HE-GQ-G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (394)
Q Consensus 103 ~~-~~-~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l 162 (394)
.. .. . .....++.++..+ .-+.+++++ .+|+++++| ||++++|....+.+...+..+
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD---EP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 70 RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD---EPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred cCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHHHHHHHHH
Confidence 00 00 0 0001111111000 115567777 899999999 999999999875554443322
Q ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.+ .....+.. .+|+..++..+||++ .+|++|++...++
T Consensus 147 ~~---~~g~tiii-vTHd~~e~~~~~d~i-~vl~~G~i~~~g~ 184 (325)
T TIGR01187 147 QE---QLGITFVF-VTHDQEEAMTMSDRI-AIMRKGKIAQIGT 184 (325)
T ss_pred HH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 11 11122212 249999999999999 8999999887654
No 300
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.34 E-value=5.4e-13 Score=140.40 Aligned_cols=169 Identities=18% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....+++|++++|+|++|+|||||+++|+|. .+|++|.|.++|.++..+.. .|.||...-
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-----------YEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 445577899999999999999999999999999 67999999999987754331 577877544
Q ss_pred cceEEEeccccccc-ccCCCCCc--------hhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRG-AHEGQGLG--------NSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~-~~~~~~l~--------~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
..-++.|+..+... ......+. ..++..+ . .----+.++|++ .+|+++++|
T Consensus 418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD--- 494 (571)
T TIGR02203 418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD--- 494 (571)
T ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 44555555544421 10000000 0000000 0 000115677877 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..+++.+...+....+ .+++ .-.+|+... ...||++ ..|++|++...++
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~~-----~~ti-IiitH~~~~-~~~~D~i-i~l~~g~i~~~g~ 550 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLMQ-----GRTT-LVIAHRLST-IEKADRI-VVMDDGRIVERGT 550 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHhC-----CCEE-EEEehhhHH-HHhCCEE-EEEeCCEEEeeCC
Confidence 99999999997554333221100 0111 122488754 4679998 7788888776554
No 301
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.34 E-value=6.1e-13 Score=143.48 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=107.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. -.|.||+..-
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 566 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-----------YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL 566 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc
Confidence 455677889999999999999999999999999 6799999999998875432 1577777544
Q ss_pred cceEEEecccccccccCCCCCc--------hhhhhHHH-hhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSHIR-AVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l~-~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+. ..+.+.+. ..| --+.++||+ .+|+++++| |
T Consensus 567 F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD---E 643 (711)
T TIGR00958 567 FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD---E 643 (711)
T ss_pred cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---c
Confidence 4455556554432111000000 00110000 000 115677777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|...+..+.. ....-.+++ ...+|..+.+ ..+|+| ..|++|+++..|+.
T Consensus 644 pTSaLD~~te~~i~~-------~~~~~~~Tv-IiItHrl~~i-~~aD~I-ivL~~G~ive~Gt~ 697 (711)
T TIGR00958 644 ATSALDAECEQLLQE-------SRSRASRTV-LLIAHRLSTV-ERADQI-LVLKKGSVVEMGTH 697 (711)
T ss_pred cccccCHHHHHHHHH-------hhccCCCeE-EEEeccHHHH-HhCCEE-EEEECCEEEEeeCH
Confidence 999999977543322 000001111 1224888765 458999 88899998877753
No 302
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.33 E-value=7.8e-13 Score=124.56 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=99.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~- 85 (394)
......+.+|++++|+|+||||||||+++|+|... ..|++|.|.++|.++.... ..|.++..
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---------CCCCceEEEECCCccccCCHHHHhhcceEEEecCch
Confidence 55677889999999999999999999999999821 1489999999987653211 12333331
Q ss_pred cccceEEEeccccc-ccc--cCC-C-----CCchhhhhHHH---h----------------hhhHHhhhhcc-CCCCeEE
Q 016139 86 VPAFLEIHDIAGLV-RGA--HEG-Q-----GLGNSFLSHIR---A----------------VDGIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 86 ~~~~i~~~D~~gl~-~~~--~~~-~-----~l~~~~l~~l~---~----------------~d~il~vv~a~-~~~~vl~ 136 (394)
....++........ ... ... . .+.......+. . --.-+.+++++ .+|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 89 EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11100100000000 000 000 0 00000000000 0 00114566666 7999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHH-HHHHHHHhcCCCceecCCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l-~~ri~~~L~~g~~~~~~~~ 206 (394)
+| ||++++|....+.....+..+ ......+.. .+|+...+..+ |+++ .+|++|++...++.
T Consensus 169 LD---EPt~~LD~~~~~~l~~~l~~l----~~~~~tiii-~sH~~~~~~~~~~d~i-~~l~~g~i~~~g~~ 230 (248)
T PRK09580 169 LD---ESDSGLDIDALKIVADGVNSL----RDGKRSFII-VTHYQRILDYIKPDYV-HVLYQGRIVKSGDF 230 (248)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHHH----HhCCCEEEE-EeCCHHHHHhhhCCEE-EEEECCeEEEeCCH
Confidence 99 999999998865443332221 111112212 23999888887 7888 78899998877654
No 303
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.8e-13 Score=127.00 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=103.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC------cchhhh-----h--hhcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD------ERFEWL-----C--QLFK 81 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g------~~~~~l-----~--~~~~ 81 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.+.| .++... . ..|.
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-----------~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~ 95 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-----------IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMV 95 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCcCceeEcCEEEECCcccccCCHHHHhcceEEE
Confidence 556677889999999999999999999999999 567776665554 332111 1 1355
Q ss_pred CCCc-cccceEEEeccccccccc--CCC-CC---chhhhhHHHh------------------hhhHHhhhhcc-CCCCeE
Q 016139 82 PKSA-VPAFLEIHDIAGLVRGAH--EGQ-GL---GNSFLSHIRA------------------VDGIFHVLRAF-EDPDII 135 (394)
Q Consensus 82 ~~~~-~~~~i~~~D~~gl~~~~~--~~~-~l---~~~~l~~l~~------------------~d~il~vv~a~-~~~~vl 135 (394)
++.. .+..+++.|...+..... ... .. ....++.++. --.-+.+++++ .+|+++
T Consensus 96 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ll 175 (257)
T PRK14246 96 FQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175 (257)
T ss_pred ccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 5552 223344444433221100 000 00 0001111110 00115567777 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++| ||++++|..........+..+. + ...+.. .+|+...+..+|+++ ..|++|++...++.
T Consensus 176 llD---EPt~~LD~~~~~~l~~~l~~~~---~--~~tiil-vsh~~~~~~~~~d~v-~~l~~g~i~~~g~~ 236 (257)
T PRK14246 176 LMD---EPTSMIDIVNSQAIEKLITELK---N--EIAIVI-VSHNPQQVARVADYV-AFLYNGELVEWGSS 236 (257)
T ss_pred EEc---CCCccCCHHHHHHHHHHHHHHh---c--CcEEEE-EECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999 9999999998654444332221 1 122212 249999999999999 88899998776643
No 304
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=5e-13 Score=127.91 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|+++||+|+||||||||+++|+|..... ...|++|.|.++|.++.. .. ..|.||..
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~------~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV------DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCc------cCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 4455778999999999999999999999999983100 001579999999876532 11 13556552
Q ss_pred cccceEEEecccccccccC--CCCC----chhhhhHHHh-------h-----------hhHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQGL----GNSFLSHIRA-------V-----------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~l----~~~~l~~l~~-------~-----------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... .... ....++.++. . -.-+.+++++ .+|+++++|
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD-- 193 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD-- 193 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe--
Confidence 1111233343322110000 0000 0000111000 0 0115567777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+. + ...+.. .+|+...+.++|+++ .+|++|++...++
T Consensus 194 -EPt~gLD~~~~~~l~~~L~~~~----~-~~tiii-vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 250 (272)
T PRK14236 194 -EPTSALDPISTLKIEELITELK----S-KYTIVI-VTHNMQQAARVSDYT-AFMYMGKLVEYGD 250 (272)
T ss_pred -CCcccCCHHHHHHHHHHHHHHH----h-CCeEEE-EeCCHHHHHhhCCEE-EEEECCEEEecCC
Confidence 9999999998655444333221 1 112212 249999999999999 8899999877654
No 305
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.33 E-value=4.9e-13 Score=126.87 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=100.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|....
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l 106 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-----------VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL 106 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-----------cCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc
Confidence 455677889999999999999999999999999 6799999999997764321 1355554211
Q ss_pred cceEEEecccccccccC---C-----CCCchhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHE---G-----QGLGNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~---~-----~~l~~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.+.......... . .++. .++..+ . ..---+.+++++ .+|+++++| |
T Consensus 107 ~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---E 182 (257)
T cd03288 107 FSGSIRFNLDPECKCTDDRLWEALEIAQLK-NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD---E 182 (257)
T ss_pred cccHHHHhcCcCCCCCHHHHHHHHHHhCcH-HHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 11122222211100000 0 0000 000000 0 000114566666 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++++|+...+.....+.. +.. ...+ .-.+|+...+.. |+++ ..|.+|+++..++
T Consensus 183 Pt~gLD~~~~~~l~~~l~~----~~~-~~ti-ii~sh~~~~~~~-~dri-~~l~~G~i~~~g~ 237 (257)
T cd03288 183 ATASIDMATENILQKVVMT----AFA-DRTV-VTIAHRVSTILD-ADLV-LVLSRGILVECDT 237 (257)
T ss_pred CccCCCHHHHHHHHHHHHH----hcC-CCEE-EEEecChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 9999999886544333221 111 1122 112388888875 9999 8889999886654
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.5e-12 Score=134.78 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=102.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~- 85 (394)
......++.|+++||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~ 333 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI-----------REKSAGTITLHGKKINNHNANEAINHGFALVTEERR 333 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC-----------CcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchh
Confidence 344567899999999999999999999999999 679999999998765321 1 13555542
Q ss_pred ---cccceEE-----Eecccccc---cc-cCC--CCCchhhhhHHHhh----h-----------hHHhhhhcc-CCCCeE
Q 016139 86 ---VPAFLEI-----HDIAGLVR---GA-HEG--QGLGNSFLSHIRAV----D-----------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 86 ---~~~~i~~-----~D~~gl~~---~~-~~~--~~l~~~~l~~l~~~----d-----------~il~vv~a~-~~~~vl 135 (394)
+...+++ .+...... +. ... ......++..+... + .-+.+++++ .+|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~il 413 (491)
T PRK10982 334 STGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEIL 413 (491)
T ss_pred hCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEE
Confidence 1122221 11110000 00 000 00000111111110 0 114456666 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
++| ||++++|+...+.+...+..+. .....+.. .+|++..+..+|+++ .+|.+|+++..
T Consensus 414 lLD---EPt~gLD~~~~~~~~~~l~~l~----~~~~tvi~-vsHd~~~~~~~~d~v-~~l~~g~i~~~ 472 (491)
T PRK10982 414 MLD---EPTRGIDVGAKFEIYQLIAELA----KKDKGIII-ISSEMPELLGITDRI-LVMSNGLVAGI 472 (491)
T ss_pred EEc---CCCcccChhHHHHHHHHHHHHH----HCCCEEEE-ECCChHHHHhhCCEE-EEEECCEEEEE
Confidence 999 9999999999766554432221 11122212 239999999999999 88899998754
No 307
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=5.8e-13 Score=125.87 Aligned_cols=175 Identities=15% Similarity=0.190 Sum_probs=102.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------h--hhhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l--~~~~~~~~~ 85 (394)
.....++..|+++||+|+||||||||+++|+|.... .| ..+++|.|.++|.++.. . ...|.+|..
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL---IP---GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CC---CCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 455677899999999999999999999999997310 00 01258999999876531 1 113555552
Q ss_pred cccceEEEecccccccccC--CCC-CchhhhhHHHhh----------h-----------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAV----------D-----------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~-l~~~~l~~l~~~----------d-----------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.+...+...... ... ........+..+ + .-+.+++++ .+|+++++|
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD-- 173 (252)
T PRK14255 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD-- 173 (252)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 1111233333322100000 000 000000001110 0 114566776 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+.+ ...+.. .+|+...+...|+++ .+|++|+++..++
T Consensus 174 -EPt~~LD~~~~~~l~~~l~~~~~-----~~tii~-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14255 174 -EPTSALDPISSTQIENMLLELRD-----QYTIIL-VTHSMHQASRISDKT-AFFLTGNLIEFAD 230 (252)
T ss_pred -CCCccCCHHHHHHHHHHHHHHHh-----CCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987554443332211 112212 249999999999999 8889998876543
No 308
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.7e-13 Score=128.78 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=104.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-C--ceeEEecCCcchhh-------hh--hhccC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-P--NEARVNIPDERFEW-------LC--QLFKP 82 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p--~~G~i~v~g~~~~~-------l~--~~~~~ 82 (394)
+.....+.+|++++|+|+||||||||+++|+|... .. | ++|.|.++|.++.. +. ..|.+
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 94 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---------LEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---------cccCCccceEEEECCEeccccccchHhhhhheEEEe
Confidence 55677889999999999999999999999999831 01 2 58999999876531 11 13555
Q ss_pred CCccccceEEEeccccccccc---CCC---CCchhhhhHHHh------------------hhhHHhhhhcc-CCCCeEEe
Q 016139 83 KSAVPAFLEIHDIAGLVRGAH---EGQ---GLGNSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~~~~---~~~---~l~~~~l~~l~~------------------~d~il~vv~a~-~~~~vl~l 137 (394)
|.......++.+...+..... ... ......+..++. --..+.+++|+ .+|+++++
T Consensus 95 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 174 (259)
T PRK14260 95 QRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174 (259)
T ss_pred cccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 553211234444332210000 000 000000110000 00114566777 89999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc-----CCCceecCCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-----DGKDVRLGDW 206 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~-----~g~~~~~~~~ 206 (394)
| ||++++|+.........+..+.+ ...+.. .+|++..+..+|+++ .+|+ +|+++..++.
T Consensus 175 D---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiii-~tH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 175 D---EPCSALDPIATMKVEELIHSLRS-----ELTIAI-VTHNMQQATRVSDFT-AFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred c---CCCccCCHHHHHHHHHHHHHHhc-----CCEEEE-EeCCHHHHHHhcCeE-EEEeccCCCCceEEEeCCH
Confidence 9 99999999987655444332211 112212 249999999999998 7776 4888766543
No 309
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.33 E-value=6.5e-13 Score=138.38 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=106.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecC-Ccc---hh--------hhh--hhc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DER---FE--------WLC--QLF 80 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~---~~--------~l~--~~~ 80 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++ |.. +. ... ..|
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 369 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-----------LEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEecCCccccccccchhhHHHHhhhEEE
Confidence 345677899999999999999999999999999 66899999985 431 11 111 246
Q ss_pred cCCC-ccccceEEEecccccc--cccCC--CCCchhhhhHHHhh-------------------hhHHhhhhcc-CCCCeE
Q 016139 81 KPKS-AVPAFLEIHDIAGLVR--GAHEG--QGLGNSFLSHIRAV-------------------DGIFHVLRAF-EDPDII 135 (394)
Q Consensus 81 ~~~~-~~~~~i~~~D~~gl~~--~~~~~--~~l~~~~l~~l~~~-------------------d~il~vv~a~-~~~~vl 135 (394)
.||. .....+++.|...+.. ..... ......+++.+... -..+.+++|+ .+|+++
T Consensus 370 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lL 449 (520)
T TIGR03269 370 LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIV 449 (520)
T ss_pred EccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 6665 2233344444332210 00000 00000111111110 0115566776 799999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++++|+...+.+...+..+.+ .....+.. .+|+...+..+|+++ .+|.+|+++..++
T Consensus 450 llD---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tvi~-vsHd~~~~~~~~d~i-~~l~~G~i~~~g~ 511 (520)
T TIGR03269 450 ILD---EPTGTMDPITKVDVTHSILKARE---EMEQTFII-VSHDMDFVLDVCDRA-ALMRDGKIVKIGD 511 (520)
T ss_pred EEe---CCcccCCHHHHHHHHHHHHHHHH---HcCcEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999 99999999997665554433221 11112212 249999999999999 8889999877654
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=99.33 E-value=5e-13 Score=140.69 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=99.5
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccceEEEeccc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAG 97 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i~~~D~~g 97 (394)
+.+..|+++||+|+||||||||+++|+|. ..|++|.|.+. . ...|.||.. .....++.|...
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~-~-----~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGV-----------LKPDEGEVDPE-L-----KISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEe-e-----eEEEecccccCCCCCcHHHHHH
Confidence 45689999999999999999999999999 67999999874 1 223455542 223344444433
Q ss_pred ccccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHH
Q 016139 98 LVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (394)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l 162 (394)
+.............+++.+...+ .-+.+++++ .+|+++++| ||++++|+.....+...+..+
T Consensus 423 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD---EPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 423 SITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD---EPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHHHH
Confidence 21110000000111111111111 114566776 799999999 999999999875554433222
Q ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCChh
Q 016139 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAA 209 (394)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~~~ 209 (394)
.+ .....+ .-.+|+...+..+||++ .+|+ |++...+..+..
T Consensus 500 ~~---~~g~tv-iivsHD~~~~~~~aDrv-ivl~-~~~~~~g~~~~~ 540 (590)
T PRK13409 500 AE---EREATA-LVVDHDIYMIDYISDRL-MVFE-GEPGKHGHASGP 540 (590)
T ss_pred HH---hCCCEE-EEEeCCHHHHHHhCCEE-EEEc-CcceeeeecCCc
Confidence 11 111122 12249999999999998 6665 476665554433
No 311
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5e-13 Score=134.33 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=105.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
......+.+|++++|+|++|||||||++.|+|. .+|++|+|..+|.++..+.. .+.+|+.--
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-----------~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-----------WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 456677899999999999999999999999999 78999999999987754433 345555322
Q ss_pred cceEEEecccccccccCCC---------------------------------CCchhhhhHHHhhhhHHhhhhccCCCCe
Q 016139 88 AFLEIHDIAGLVRGAHEGQ---------------------------------GLGNSFLSHIRAVDGIFHVLRAFEDPDI 134 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~---------------------------------~l~~~~l~~l~~~d~il~vv~a~~~~~v 134 (394)
+.-++.|+.-+......++ +-|. .+++..+.+++ ++..+
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE--~rRLAlAR~LL------~dapl 495 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE--RRRLALARALL------HDAPL 495 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH--HHHHHHHHHHH------cCCCe
Confidence 2233333333322111100 0111 13333333333 58899
Q ss_pred EEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 135 l~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
.++| ||+.++|.+++.-++.-+ .+..+ +.+ .-.+|.+..+ +-||+| .+|++|+++..|+..
T Consensus 496 ~lLD---EPTegLD~~TE~~vL~ll------~~~~~~kTl-l~vTHrL~~l-e~~drI-ivl~~Gkiie~G~~~ 557 (573)
T COG4987 496 WLLD---EPTEGLDPITERQVLALL------FEHAEGKTL-LMVTHRLRGL-ERMDRI-IVLDNGKIIEEGTHA 557 (573)
T ss_pred EEec---CCcccCChhhHHHHHHHH------HHHhcCCeE-EEEecccccH-hhcCEE-EEEECCeeeecCCHH
Confidence 9999 999999999975443322 12221 122 1224888776 468999 899999999887643
No 312
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.33 E-value=8e-13 Score=126.63 Aligned_cols=169 Identities=16% Similarity=0.223 Sum_probs=103.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~ 86 (394)
-+.....+..|+++||+|+||||||||+++|+|. .. ++|.|.++|.++.... ..|.||...
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl-----------~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~ 87 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVF 87 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcc
Confidence 4566778999999999999999999999999998 44 6899999998764321 145666532
Q ss_pred ccceEEEecccccccccC--------CCCCchhhhhH---------------HH-hhhhHHhhhhcc-CCCCeEEecCCC
Q 016139 87 PAFLEIHDIAGLVRGAHE--------GQGLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~--------~~~l~~~~l~~---------------l~-~~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
....++.|+......... ..++. .+... +. ..--.+.+++|+ .+|+++++|
T Consensus 88 lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD--- 163 (275)
T cd03289 88 IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD--- 163 (275)
T ss_pred cchhhHHHHhhhccCCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 222233333211100000 00000 00000 00 001125566776 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|+.....+...+.. +. ....+ .-.+|++..+. .||++ .+|++|+++..++.
T Consensus 164 Epts~LD~~~~~~l~~~l~~----~~-~~~ti-i~isH~~~~i~-~~dri-~vl~~G~i~~~g~~ 220 (275)
T cd03289 164 EPSAHLDPITYQVIRKTLKQ----AF-ADCTV-ILSEHRIEAML-ECQRF-LVIEENKVRQYDSI 220 (275)
T ss_pred CccccCCHHHHHHHHHHHHH----hc-CCCEE-EEEECCHHHHH-hCCEE-EEecCCeEeecCCH
Confidence 99999999986544333221 10 01122 12239998776 49999 88999999877754
No 313
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=2.2e-12 Score=113.13 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=85.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+.+|+.++|+|+||+|||||+++|+|. ..|+.|.++++|..+...... .....+.++.
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~~~ 79 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKLPLE-----ELRRRIGYVP 79 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccCCHH-----HHHhceEEEe
Confidence 445577899999999999999999999999999 678999999998643211000 0000011110
Q ss_pred cccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 016139 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~ 174 (394)
- .+.|++ +.+..+-+++ .+|+++++| ||++++|..........+..+ ... ...+
T Consensus 80 q----------lS~G~~--~r~~l~~~l~------~~~~i~ilD---Ep~~~lD~~~~~~l~~~l~~~---~~~-~~ti- 133 (157)
T cd00267 80 Q----------LSGGQR--QRVALARALL------LNPDLLLLD---EPTSGLDPASRERLLELLREL---AEE-GRTV- 133 (157)
T ss_pred e----------CCHHHH--HHHHHHHHHh------cCCCEEEEe---CCCcCCCHHHHHHHHHHHHHH---HHC-CCEE-
Confidence 0 111222 3333333333 489999999 999999998854332222111 111 1122
Q ss_pred cccchhhHHHHHHHHHHHHHhcCC
Q 016139 175 RSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 175 ~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
.-.+|+...+..+|+++ ..+.+|
T Consensus 134 i~~sh~~~~~~~~~d~i-~~l~~g 156 (157)
T cd00267 134 IIVTHDPELAELAADRV-IVLKDG 156 (157)
T ss_pred EEEeCCHHHHHHhCCEE-EEEeCc
Confidence 22249999988888877 444443
No 314
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.33 E-value=4.5e-13 Score=127.01 Aligned_cols=162 Identities=15% Similarity=0.203 Sum_probs=89.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEe-----------cCCcchhhhhh---------h
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ---------L 79 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~-----------v~g~~~~~l~~---------~ 79 (394)
.+.+|++++|+|+||||||||+++|+|. ..|++|.|. +.|.++..... .
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGK-----------LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 4789999999999999999999999999 679999996 55655432110 1
Q ss_pred ccCCCccccceEEEecccccccccCCCCCchhhhhHHH--------------hhhhHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIR--------------AVDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 80 ~~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~--------------~~d~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
+.++........+.++....-...........+++.+. ..-..+.+++++ .+|+++++| ||+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt 167 (255)
T cd03236 91 VKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD---EPS 167 (255)
T ss_pred eecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCC
Confidence 11221000000111110000000000000000010000 001124566666 799999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
+++|........+.+..+.+ -...+ .-.+|+...+..+|+++ ..|. |++..
T Consensus 168 s~LD~~~~~~l~~~l~~l~~----~~~tI-IiiSHd~~~~~~~ad~i-~~l~-~~~~~ 218 (255)
T cd03236 168 SYLDIKQRLNAARLIRELAE----DDNYV-LVVEHDLAVLDYLSDYI-HCLY-GEPGA 218 (255)
T ss_pred CCCCHHHHHHHHHHHHHHHh----cCCEE-EEEECCHHHHHHhCCEE-EEEC-CCCCc
Confidence 99999986555444332221 11122 12249999999999998 6664 54543
No 315
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.2e-13 Score=126.66 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=104.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~--~~~~~~~~ 85 (394)
......+.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|.||..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL---IP---GFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc---CC---CCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 556678899999999999999999999999997210 00 11478999999976532 11 24666653
Q ss_pred cccceEEEecccccccccC--CCC-CchhhhhHHHhhh---------------------hHHhhhhcc-CCCCeEEecCC
Q 016139 86 VPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~--~~~-l~~~~l~~l~~~d---------------------~il~vv~a~-~~~~vl~ld~~ 140 (394)
.....++.|...+...... ... ....+...++.++ ..+.+++++ .+|+++++|
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD-- 171 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD-- 171 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc--
Confidence 2111233333322110000 000 0001111111111 115566777 899999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..........+..+ .. ...+.. .+|+...+...|+++ .+|++|++...++
T Consensus 172 -EP~~gLD~~~~~~l~~~l~~~----~~-~~tiii-~sh~~~~~~~~~~~i-~~l~~G~i~~~g~ 228 (250)
T PRK14266 172 -EPCSALDPISTTKIEDLIHKL----KE-DYTIVI-VTHNMQQATRVSKYT-SFFLNGEIIESGL 228 (250)
T ss_pred -CCCccCCHHHHHHHHHHHHHH----hc-CCeEEE-EECCHHHHHhhcCEE-EEEECCeEEEeCC
Confidence 999999998865544433222 11 112212 239999999999988 7789999887654
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.33 E-value=7.9e-13 Score=139.75 Aligned_cols=169 Identities=19% Similarity=0.262 Sum_probs=108.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||...-
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-----------FDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 455577889999999999999999999999999 67999999999987754331 577777544
Q ss_pred cceEEEecccccccccCCCCCc--------hhhhhHH-Hhhhh---------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI-RAVDG---------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l-~~~d~---------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+- ..+++.+ ...|. -+.++|++ .+|+++++| |
T Consensus 421 f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD---E 497 (588)
T PRK13657 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD---E 497 (588)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 4455666554432111000000 0000000 00010 15677777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++.+|..+++.+...+..+ .. .+++ ...+|....+ +.||++ ..|++|++...|+
T Consensus 498 pts~LD~~t~~~i~~~l~~~---~~--~~tv-IiitHr~~~~-~~~D~i-i~l~~G~i~~~g~ 552 (588)
T PRK13657 498 ATSALDVETEAKVKAALDEL---MK--GRTT-FIIAHRLSTV-RNADRI-LVFDNGRVVESGS 552 (588)
T ss_pred CccCCCHHHHHHHHHHHHHH---hc--CCEE-EEEEecHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 99999999875543332111 00 1111 2224888665 569999 8889999876654
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=3.2e-13 Score=143.76 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=99.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc-chhhhhhhccCCCc---cccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSA---VPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~-~~~~l~~~~~~~~~---~~~~i 90 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.+.+. ++ .|.+|.. .....
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~~i-----gy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-----------LAPVSGEIGLAKGIKL-----GYFAQHQLEFLRADE 392 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCCEEE-----EEecCcchhhCCccc
Confidence 345567889999999999999999999999999 6799999988632 22 2333321 11111
Q ss_pred EEEeccc-ccccccCCCCCchhhhhHHHh---------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHH
Q 016139 91 EIHDIAG-LVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (394)
Q Consensus 91 ~~~D~~g-l~~~~~~~~~l~~~~l~~l~~---------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~e 153 (394)
++.+... +.... .......++..+.. --.-+.+++++ .+|+++++| ||++++|+...+
T Consensus 393 ~~~~~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD---EPt~~LD~~~~~ 467 (638)
T PRK10636 393 SPLQHLARLAPQE--LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD---EPTNHLDLDMRQ 467 (638)
T ss_pred hHHHHHHHhCchh--hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHH
Confidence 1111110 00000 00000011111110 00124566666 799999999 999999999975
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-ecCCCC
Q 016139 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (394)
Q Consensus 154 l~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~~~~~~ 207 (394)
.+...+. .+...+.. .+|+...+..+|+++ .+|.+|++. +.|+++
T Consensus 468 ~l~~~L~-------~~~gtvi~-vSHd~~~~~~~~d~i-~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 468 ALTEALI-------DFEGALVV-VSHDRHLLRSTTDDL-YLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHHH-------HcCCeEEE-EeCCHHHHHHhCCEE-EEEECCEEEEcCCCHH
Confidence 5544332 22222212 249999999999999 888999986 566654
No 318
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.32 E-value=5.4e-13 Score=143.58 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=109.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
.....++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.||....
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-----------YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 445577889999999999999999999999999 67999999999988754321 477777444
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh-------------h---------------hHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------d---------------~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..+....... .++.+.++.+ | --+.++||+ .+|+++++|
T Consensus 543 f~~ti~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 543 FSRSIRDNIALCNPGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred hhhhHHHHHhcCCCCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 444555554443211100 0000000000 0 115567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+..+. . ..++ .-.+|..+.+. .||++ ..|++|+++..|+.
T Consensus 619 ---Epts~LD~~~~~~i~~~l~~~~---~--~~t~-i~itH~~~~~~-~~d~i-i~l~~G~i~~~g~~ 675 (694)
T TIGR01846 619 ---EATSALDYESEALIMRNMREIC---R--GRTV-IIIAHRLSTVR-ACDRI-IVLEKGQIAESGRH 675 (694)
T ss_pred ---CCCcCCCHHHHHHHHHHHHHHh---C--CCEE-EEEeCChHHHH-hCCEE-EEEeCCEEEEeCCH
Confidence 9999999999755544332110 0 1111 12238887765 59999 88899999877753
No 319
>PRK00089 era GTPase Era; Reviewed
Probab=99.32 E-value=1.3e-12 Score=126.22 Aligned_cols=193 Identities=22% Similarity=0.249 Sum_probs=113.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..|+|+|+||||||||+|.|+|....+ ++.|.||.....|....++ .++.++||||+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCchh
Confidence 479999999999999999999987754 8899999887777665432 3589999999875432
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhccCCCC---eEE---ecCCCCCc----chHHHH-HHHHHHhHHHHHHHHHHHHHH
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIH---VDDSVDPV----RDLEVI-SAELRLKDIEFMERRIEDVEK 171 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~~~~~---vl~---ld~~~eP~----~~ld~i-~~el~~~di~~l~k~l~~~~~ 171 (394)
. ...+.......+..+|++++|+|+..... ..+ +.....|. +.+|.. +.+.....+..+.+... ...
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~-~~~ 147 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD-FAE 147 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC-CCe
Confidence 1 11112223445677888888887753110 000 00000111 122222 11111111111111100 011
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhH-----HHHHHhh-hhhcccCEeeecccchhhh
Q 016139 172 SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDY 236 (394)
Q Consensus 172 ~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e-----~e~i~~~-~~~~~kp~~~~~N~~~~~~ 236 (394)
.+..|. .....+..+++.+...++.+..+++ ...++.. .|++|+. .....+++||.+.+..+.+
T Consensus 148 i~~iSA-~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~ 218 (292)
T PRK00089 148 IVPISA-LKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKF 218 (292)
T ss_pred EEEecC-CCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEE
Confidence 122222 4556678888888888888887766 3455443 2677877 6667899999987766555
No 320
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.32 E-value=4e-13 Score=142.78 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=106.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh------------------hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------WL 76 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~------------------~l 76 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.+.|..+. .+
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-----------l~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRL-----------LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCeEEEECCEEeccccccccccccCCHHHHHHH
Confidence 456677899999999999999999999999999 6788999988774321 00
Q ss_pred h---hhccCCCc---cccceEEEecccccccccCC----C--CCchhhhhHHHhh------h-----------hHHhhhh
Q 016139 77 C---QLFKPKSA---VPAFLEIHDIAGLVRGAHEG----Q--GLGNSFLSHIRAV------D-----------GIFHVLR 127 (394)
Q Consensus 77 ~---~~~~~~~~---~~~~i~~~D~~gl~~~~~~~----~--~l~~~~l~~l~~~------d-----------~il~vv~ 127 (394)
. -.|.+|.. ....+++.+...+....+.+ . .....+++.++.. + --+.+++
T Consensus 102 r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred hCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHH
Confidence 0 13444432 22223444433221000000 0 0000111111110 0 0145667
Q ss_pred cc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 128 AF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 128 a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+ .+|+++++| ||++.||+.....++..+..+.+ +....+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 182 AL~~~P~lLllD---EPt~~LD~~~~~~l~~ll~~l~~---~~g~tvi~-itHdl~~~~~~adri-~vl~~G~i~~~g~ 252 (623)
T PRK10261 182 ALSCRPAVLIAD---EPTTALDVTIQAQILQLIKVLQK---EMSMGVIF-ITHDMGVVAEIADRV-LVMYQGEAVETGS 252 (623)
T ss_pred HHhCCCCEEEEe---CCCCccCHHHHHHHHHHHHHHHH---hcCCEEEE-EcCCHHHHHHhCCEE-EEeeCCeecccCC
Confidence 76 799999999 99999999997666665443322 11222222 249999999999999 9999999876554
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.32 E-value=2.5e-12 Score=118.05 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--h--hhhccCCC-ccccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--L--CQLFKPKS-AVPAF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l--~~~~~~~~-~~~~~ 89 (394)
......+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|..+.. . ...|.++. .....
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 87 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-----------LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCC
Confidence 456678899999999999999999999999999 66899999999865421 1 11344433 22223
Q ss_pred eEEEecccccccccC-CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHH
Q 016139 90 LEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (394)
Q Consensus 90 i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~e 153 (394)
.++.|...+...... .......+++.++..+ .-+.+++++ .+|+++++| ||++++|+...+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~~ 164 (207)
T PRK13539 88 LTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD---EPTAALDAAAVA 164 (207)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHH
Confidence 344443322111000 0000011111111100 114566776 799999999 999999999875
Q ss_pred HHHhH
Q 016139 154 LRLKD 158 (394)
Q Consensus 154 l~~~d 158 (394)
.+...
T Consensus 165 ~l~~~ 169 (207)
T PRK13539 165 LFAEL 169 (207)
T ss_pred HHHHH
Confidence 55443
No 322
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.32 E-value=8.7e-13 Score=137.71 Aligned_cols=178 Identities=16% Similarity=0.189 Sum_probs=105.9
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~ 82 (394)
-......+..|+++||+||||||||||+++|+|...+. ...|++|.|.++|.++... ...|.+
T Consensus 25 l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 25 VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP------PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC------cCCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 35667788999999999999999999999999993200 0013799999998765321 113555
Q ss_pred CCc---cccceEEEeccccc----ccccCC--CCCchhhhhHHHhh------h-----------hHHhhhhcc-CCCCeE
Q 016139 83 KSA---VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAV------D-----------GIFHVLRAF-EDPDII 135 (394)
Q Consensus 83 ~~~---~~~~i~~~D~~gl~----~~~~~~--~~l~~~~l~~l~~~------d-----------~il~vv~a~-~~~~vl 135 (394)
|.. .....++.+..... .+.... .......++.++.. + --+.+++++ .+|+++
T Consensus 99 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 99 QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 542 11112222211100 000000 00001111111110 0 114567777 899999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++| ||++.+|+.....+...+..+.+ .....+ .-.+|++..+..+||++ .+|++|+++..++
T Consensus 179 llD---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tv-i~vtHd~~~~~~~~dri-~~l~~G~i~~~g~ 240 (529)
T PRK15134 179 IAD---EPTTALDVSVQAQILQLLRELQQ---ELNMGL-LFITHNLSIVRKLADRV-AVMQNGRCVEQNR 240 (529)
T ss_pred EEc---CCCCccCHHHHHHHHHHHHHHHH---hcCCeE-EEEcCcHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999 99999999997665554333221 111122 12249999999999999 8999999876653
No 323
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.32 E-value=5.6e-13 Score=138.86 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=102.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC-----------------------c
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-----------------------E 71 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g-----------------------~ 71 (394)
.....++..|+++||+|+||||||||+++|+|... ..|++|.|.+.+ .
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---------~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 87 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ---------YEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGG 87 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc---------CCCCceEEEEeccccccccccccccccccccccccc
Confidence 45667889999999999999999999999999820 148889988752 1
Q ss_pred ch-----h----------hhh--hhccCCC--ccccceEEEecccccccccCC--CCC---chhhhhHHHhhh-------
Q 016139 72 RF-----E----------WLC--QLFKPKS--AVPAFLEIHDIAGLVRGAHEG--QGL---GNSFLSHIRAVD------- 120 (394)
Q Consensus 72 ~~-----~----------~l~--~~~~~~~--~~~~~i~~~D~~gl~~~~~~~--~~l---~~~~l~~l~~~d------- 120 (394)
.+ + ... ..|.+|. ......++.+...+....... ... ...+++.++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 167 (520)
T TIGR03269 88 TLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR 167 (520)
T ss_pred cccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcc
Confidence 11 0 000 1244442 122222333332221000000 000 000111111111
Q ss_pred -------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q 016139 121 -------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVK 192 (394)
Q Consensus 121 -------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~ 192 (394)
.-+.+++++ .+|+++++| ||++++|+...+.+...+..+.+ .....+.. .+|+...+..+|+++
T Consensus 168 ~LSgGq~qrv~iA~al~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~l~~---~~g~tvii-vtHd~~~~~~~~d~i- 239 (520)
T TIGR03269 168 DLSGGEKQRVVLARQLAKEPFLFLAD---EPTGTLDPQTAKLVHNALEEAVK---ASGISMVL-TSHWPEVIEDLSDKA- 239 (520)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEee---CCcccCCHHHHHHHHHHHHHHHH---hcCcEEEE-EeCCHHHHHHhcCEE-
Confidence 115567777 799999999 99999999997665554333211 11122212 249999999999999
Q ss_pred HHhcCCCceecCCC
Q 016139 193 AWLQDGKDVRLGDW 206 (394)
Q Consensus 193 ~~L~~g~~~~~~~~ 206 (394)
.+|++|+++..++.
T Consensus 240 ~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 240 IWLENGEIKEEGTP 253 (520)
T ss_pred EEEeCCEEeeecCH
Confidence 88999998766554
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.32 E-value=7.8e-13 Score=138.83 Aligned_cols=164 Identities=12% Similarity=0.167 Sum_probs=99.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc--cccceEEE
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPAFLEIH 93 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~--~~~~i~~~ 93 (394)
.....+..|+++||+|+||||||||+++|+|. ..|++|.|.+.+. + ...|.||.. .+..+++.
T Consensus 342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~-~---~i~~v~q~~~~~~~~~tv~ 406 (556)
T PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-----------EQPDSGTIKIGET-V---KLAYVDQSRDALDPNKTVW 406 (556)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCc-e---EEEEEeCchhhcCCCCCHH
Confidence 34566789999999999999999999999999 6799999988432 1 123445431 22333444
Q ss_pred ecccccccc---cCCCCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHH
Q 016139 94 DIAGLVRGA---HEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (394)
Q Consensus 94 D~~gl~~~~---~~~~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el 154 (394)
+...+.... .........++..+... -.-+.+++++ .+|+++++| ||++++|+...+.
T Consensus 407 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~ 483 (556)
T PRK11819 407 EEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD---EPTNDLDVETLRA 483 (556)
T ss_pred HHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHH
Confidence 433221100 00000000111111100 0114566666 799999999 9999999999755
Q ss_pred HHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CCce-ecCCC
Q 016139 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (394)
Q Consensus 155 ~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~-g~~~-~~~~~ 206 (394)
+...+..+ ...+.. .+|+...+..+|+++ .+|++ |++. +.|++
T Consensus 484 l~~~l~~~-------~~tvi~-vtHd~~~~~~~~d~i-~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 484 LEEALLEF-------PGCAVV-ISHDRWFLDRIATHI-LAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHhC-------CCeEEE-EECCHHHHHHhCCEE-EEEECCCeEEEecCCH
Confidence 54443221 112212 349999999999998 67775 6654 34544
No 325
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.32 E-value=5.9e-13 Score=140.28 Aligned_cols=168 Identities=15% Similarity=0.218 Sum_probs=108.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. -.|.||+...
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 425 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-----------WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh
Confidence 344567889999999999999999999999999 6799999999998765432 1467777444
Q ss_pred cceEEEecccccccccCCCCCchhhhhH------HH------------------hhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSH------IR------------------AVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~------l~------------------~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+ ...++. +. .----+.++|++ .+|+++++| |
T Consensus 426 f~~ti~~Ni~~~~~~~~~~~i-~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD---E 501 (574)
T PRK11160 426 FSATLRDNLLLAAPNASDEAL-IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD---E 501 (574)
T ss_pred hcccHHHHhhcCCCccCHHHH-HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 344555555443211100000 000000 00 000115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++.+|..+++.+...+..+. . .+++ .-.+|....+. .||++ ..|++|+++..|+
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~---~--~~tv-iiitHr~~~~~-~~d~i-~~l~~G~i~~~g~ 556 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHA---Q--NKTV-LMITHRLTGLE-QFDRI-CVMDNGQIIEQGT 556 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHc---C--CCEE-EEEecChhHHH-hCCEE-EEEeCCeEEEeCC
Confidence 999999999765444322110 0 1111 11238887765 58999 8889999887765
No 326
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.31 E-value=1.6e-12 Score=118.93 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~ 83 (394)
......+.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+ . ..|.++
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 83 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-----------EKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ 83 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence 456677899999999999999999999999999 679999999998764211 1 134444
Q ss_pred C-ccccceEEEeccccccccc---CC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~---~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+...++.|...+..... .. ......+++.++..+ .-+.+++++ .+|+++++| |
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD---E 160 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD---E 160 (206)
T ss_pred chhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 4 2222344444332211000 00 000001111111000 115567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhH
Q 016139 143 PVRDLEVISAELRLKD 158 (394)
Q Consensus 143 P~~~ld~i~~el~~~d 158 (394)
|++++|....+.....
T Consensus 161 Pt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDL 176 (206)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 9999999886554443
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.31 E-value=8.8e-13 Score=138.35 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=102.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i~~~ 93 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.||.. ....+++.
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGEARPAPGI----KVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEeccCCCCCCCcHH
Confidence 456678899999999999999999999999999 67899999886421 123444442 22233444
Q ss_pred eccccccc-----------------ccCCC---------------------CCchh---hhhH---------HH----hh
Q 016139 94 DIAGLVRG-----------------AHEGQ---------------------GLGNS---FLSH---------IR----AV 119 (394)
Q Consensus 94 D~~gl~~~-----------------~~~~~---------------------~l~~~---~l~~---------l~----~~ 119 (394)
|...+... ..... ....+ ++.. +. .-
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq 166 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHH
Confidence 43322100 00000 00000 0000 00 00
Q ss_pred hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 120 d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
-..+.+++++ .+|+++++| ||++++|+...+.+...+ ..+...+.. .+|+...+..+|+++ .+|++|
T Consensus 167 kqrv~la~al~~~p~lLLLD---EPt~~LD~~~~~~l~~~L-------~~~~~tvIi-isHd~~~~~~~~d~v-~~l~~g 234 (552)
T TIGR03719 167 RRRVALCRLLLSKPDMLLLD---EPTNHLDAESVAWLEQHL-------QEYPGTVVA-VTHDRYFLDNVAGWI-LELDRG 234 (552)
T ss_pred HHHHHHHHHHhcCCCEEEEc---CCCCCCChHHHHHHHHHH-------HhCCCeEEE-EeCCHHHHHhhcCeE-EEEECC
Confidence 0124566676 799999999 999999999865443322 112122212 249999999999999 889999
Q ss_pred Cce-ecCCCC
Q 016139 199 KDV-RLGDWK 207 (394)
Q Consensus 199 ~~~-~~~~~~ 207 (394)
+++ +.|+++
T Consensus 235 ~i~~~~g~~~ 244 (552)
T TIGR03719 235 RGIPWEGNYS 244 (552)
T ss_pred EEEEecCCHH
Confidence 875 556655
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=7.8e-13 Score=140.79 Aligned_cols=170 Identities=16% Similarity=0.260 Sum_probs=96.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc-hhhhhh----------hccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQ----------LFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~-~~~l~~----------~~~~~ 83 (394)
......+..|+++||+|+|||||||||++|+|. ..|++|.|.+++.. +.++.+ .|.++
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-----------~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~ 86 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNE-----------ISADGGSYTFPGNWQLAWVNQETPALPQPALEYVID 86 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHH
Confidence 556678999999999999999999999999998 67999999887642 111111 00000
Q ss_pred Cc-cccceE----E---Ee----cccccc-----cccCCCCCchhhhhHHHhh---------------hhHHhhhhcc-C
Q 016139 84 SA-VPAFLE----I---HD----IAGLVR-----GAHEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-E 130 (394)
Q Consensus 84 ~~-~~~~i~----~---~D----~~gl~~-----~~~~~~~l~~~~l~~l~~~---------------d~il~vv~a~-~ 130 (394)
.. ....++ . .+ ...+.. +..........++..++.. ---+.+++++ .
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~ 166 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC 166 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc
Confidence 00 000000 0 00 000000 0000000000111111110 0114566666 7
Q ss_pred CCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-ecCCCC
Q 016139 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (394)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~~~~~~ 207 (394)
+|++++|| ||++++|+...+. +.+.+..+...+.. .+|+...+..+|+++ ..|++|++. +.|+++
T Consensus 167 ~P~lLLLD---EPtn~LD~~~~~~-------L~~~L~~~~~tvii-vsHd~~~l~~~~d~i-~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 167 RSDLLLLD---EPTNHLDLDAVIW-------LEKWLKSYQGTLIL-ISHDRDFLDPIVDKI-IHIEQQSLFEYTGNYS 232 (638)
T ss_pred CCCEEEEc---CCCCcCCHHHHHH-------HHHHHHhCCCeEEE-EeCCHHHHHHhcCEE-EEEeCCEEEEecCCHH
Confidence 99999999 9999999988532 23333322222212 249999999999999 889999986 456655
No 329
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.31 E-value=2.8e-12 Score=140.88 Aligned_cols=173 Identities=19% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--------hhhhccCCC-
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFKPKS- 84 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--------l~~~~~~~~- 84 (394)
-+.....+++|+++|++|+|||||||+|++|||. ..|++|.+.+.|..+.. ..-+|-||.
T Consensus 581 v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-----------~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d 649 (885)
T KOG0059|consen 581 VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-----------TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFD 649 (885)
T ss_pred hcceEEEecCCceEEEecCCCCCchhhHHHHhCC-----------ccCCcceEEEecCccccccchhhhhhhcccCCchh
Confidence 4567778999999999999999999999999999 67999999998876532 112577776
Q ss_pred ccccceEEEeccccc---ccccCCCCCchhhhhHHHhhhhH-----------------Hhhh-hccCCCCeEEecCCCCC
Q 016139 85 AVPAFLEIHDIAGLV---RGAHEGQGLGNSFLSHIRAVDGI-----------------FHVL-RAFEDPDIIHVDDSVDP 143 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~---~~~~~~~~l~~~~l~~l~~~d~i-----------------l~vv-~a~~~~~vl~ld~~~eP 143 (394)
.+...++..+..-+. ++... ..+.......++..... +.++ ....+|.+++|| ||
T Consensus 650 ~l~~~lT~rEhL~~~arlrG~~~-~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD---EP 725 (885)
T KOG0059|consen 650 ALWEELTGREHLEFYARLRGLPR-SDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD---EP 725 (885)
T ss_pred hhhhhccHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec---CC
Confidence 333333333322221 11110 00000000001100000 2222 233799999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+.++|+..+-.....+..+.+ -.+.+ .-++|++++.+.||+|+ .+|-+|+....|+..
T Consensus 726 stGmDP~arr~lW~ii~~~~k----~g~ai-iLTSHsMeE~EaLCtR~-aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 726 STGLDPKARRHLWDIIARLRK----NGKAI-ILTSHSMEEAEALCTRT-AIMVIGQLRCIGSPQ 783 (885)
T ss_pred CCCCCHHHHHHHHHHHHHHHh----cCCEE-EEEcCCHHHHHHHhhhh-heeecCeeEEecChH
Confidence 999999886333332222111 11111 11249999999999999 999999999888754
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.30 E-value=1.4e-12 Score=136.90 Aligned_cols=164 Identities=12% Similarity=0.166 Sum_probs=98.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc--cccceEEE
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPAFLEIH 93 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~--~~~~i~~~ 93 (394)
.....+..|+++||+||||||||||+++|+|. ..|++|.|.+.+. + ...|.||.. .+..+++.
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~-~---~i~~v~q~~~~~~~~~tv~ 404 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-----------EQPDSGTIKIGET-V---KLAYVDQSRDALDPNKTVW 404 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEECCc-e---EEEEEeCCccccCCCCcHH
Confidence 35567789999999999999999999999999 6799999988432 1 123444431 22233443
Q ss_pred eccccccc---ccCCCCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHH
Q 016139 94 DIAGLVRG---AHEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (394)
Q Consensus 94 D~~gl~~~---~~~~~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el 154 (394)
+...+... ..........++..+... -.-+.+++++ .+|+++++| ||++++|+...+.
T Consensus 405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~ 481 (552)
T TIGR03719 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD---EPTNDLDVETLRA 481 (552)
T ss_pred HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHH
Confidence 33222110 000000000111111100 0114566666 799999999 9999999999755
Q ss_pred HHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CCce-ecCCC
Q 016139 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (394)
Q Consensus 155 ~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~-g~~~-~~~~~ 206 (394)
+...+..+ ...+.. .+|+...+..+|+++ .+|++ |++. +.+++
T Consensus 482 l~~~l~~~-------~~~vii-vsHd~~~~~~~~d~i-~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 482 LEEALLEF-------AGCAVV-ISHDRWFLDRIATHI-LAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHC-------CCeEEE-EeCCHHHHHHhCCEE-EEEECCCeEEEeCCCH
Confidence 54433322 112222 249999999999999 67875 4654 44554
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.1e-12 Score=136.93 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=98.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCC-ccccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~-~~~~~i~~~ 93 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.+++.. ...|.+|. ..+..+++.
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~----~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-----------LEPSAGNVSLDPNE----RLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEeccCCcCCCCcHH
Confidence 456678899999999999999999999999998 66899999887631 01233332 111112222
Q ss_pred ecccccc---------------cc----------------------cCCCCCchhhhhHHHh---------------hhh
Q 016139 94 DIAGLVR---------------GA----------------------HEGQGLGNSFLSHIRA---------------VDG 121 (394)
Q Consensus 94 D~~gl~~---------------~~----------------------~~~~~l~~~~l~~l~~---------------~d~ 121 (394)
|...+.. .. .........+++.++. --.
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 2111100 00 0000000000100000 001
Q ss_pred HHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCc
Q 016139 122 IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 122 il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
-+.+++++ .+|+++++| ||++++|+...+.+...+ ......+... +|+...+..+|+++ .+|++|++
T Consensus 163 rv~lA~aL~~~p~lLlLD---EPt~~LD~~~~~~l~~~l-------~~~~~tiiiv-sHd~~~~~~~~d~i-~~l~~g~i 230 (530)
T PRK15064 163 RVLLAQALFSNPDILLLD---EPTNNLDINTIRWLEDVL-------NERNSTMIII-SHDRHFLNSVCTHM-ADLDYGEL 230 (530)
T ss_pred HHHHHHHHhcCCCEEEEc---CCCcccCHHHHHHHHHHH-------HhCCCeEEEE-eCCHHHHHhhcceE-EEEeCCEE
Confidence 14566666 799999999 999999999865433322 1111222122 39999999999999 89999998
Q ss_pred e-ecCCCC
Q 016139 201 V-RLGDWK 207 (394)
Q Consensus 201 ~-~~~~~~ 207 (394)
+ +.++++
T Consensus 231 ~~~~g~~~ 238 (530)
T PRK15064 231 RVYPGNYD 238 (530)
T ss_pred EEecCCHH
Confidence 4 566543
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.30 E-value=8e-13 Score=139.57 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=107.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. -.|.||....
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-----------YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-----------CCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 445577889999999999999999999999999 6799999999998765432 1466776433
Q ss_pred cceEEEecccccccccCCCCCc--------hhhhhHH-Hhhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI-RAVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l-~~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+. ..+...+ ...| --+.++|++ .+|+++++| |
T Consensus 421 f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD---E 497 (585)
T TIGR01192 421 FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD---E 497 (585)
T ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 3344555444331110000000 0000000 0000 115577777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|..+++.+...+..+. . .+.+ .-.+|..+.+. .||++ ..|++|++...|+.
T Consensus 498 pts~LD~~~~~~i~~~l~~~~---~--~~tv-I~isH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 498 ATSALDVETEARVKNAIDALR---K--NRTT-FIIAHRLSTVR-NADLV-LFLDQGRLIEKGSF 553 (585)
T ss_pred CccCCCHHHHHHHHHHHHHHh---C--CCEE-EEEEcChHHHH-cCCEE-EEEECCEEEEECCH
Confidence 999999998755544332110 0 1111 12239887774 59999 88899998876653
No 333
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.30 E-value=1.1e-12 Score=138.35 Aligned_cols=168 Identities=18% Similarity=0.266 Sum_probs=106.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+....++++|++++|+|+||+|||||+++|+|. ..|++|.|.++|.++.... -.|.||....
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-----------YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence 445577889999999999999999999999999 6799999999998765432 1577777544
Q ss_pred cceEEEecccccccccCCC---------CCchhhhhHH---------------H-hhhhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQ---------GLGNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~---------~l~~~~l~~l---------------~-~~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
..-++.|+..+.......+ ++ ..+.+.+ . .----+.++||+ .+|+++++|
T Consensus 426 f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l-~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD--- 501 (576)
T TIGR02204 426 FAASVMENIRYGRPDATDEEVEAAARAAHA-HEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD--- 501 (576)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCc-HHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe---
Confidence 4445555544432110000 00 0000000 0 000114567776 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|..+++.....+..+ .. .+.+ ...+|..... ..||++ ..|++|+++..|+
T Consensus 502 Epts~lD~~~~~~i~~~l~~~---~~--~~t~-IiitH~~~~~-~~~d~v-i~l~~g~~~~~g~ 557 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETL---MK--GRTT-LIIAHRLATV-LKADRI-VVMDQGRIVAQGT 557 (576)
T ss_pred CcccccCHHHHHHHHHHHHHH---hC--CCEE-EEEecchHHH-HhCCEE-EEEECCEEEeeec
Confidence 999999999865443322111 00 1111 2224888665 568998 7889998876665
No 334
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.30 E-value=2.2e-12 Score=119.67 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=92.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecC--Cc--chhh--------h---hhh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--DE--RFEW--------L---CQL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~--g~--~~~~--------l---~~~ 79 (394)
......+..|++++|+|+||||||||+++|+|. ..|++|.|.++ |. ++.. . ...
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 93 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-----------YLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIG 93 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceE
Confidence 556678899999999999999999999999999 67899999987 32 3211 0 113
Q ss_pred ccCCC-ccccceEEEeccccc---ccccCC--CCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEe
Q 016139 80 FKPKS-AVPAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~gl~---~~~~~~--~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~l 137 (394)
|.+|. ......++.|...+. .+.... ......+++.+... -.-+.+++++ .+|+++++
T Consensus 94 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 173 (224)
T TIGR02324 94 YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLL 173 (224)
T ss_pred EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55554 222223333322110 000000 00000111111100 0115566776 79999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri 191 (394)
| ||++++|+...+.....+..+. .....+.. .+|+...+..+||++
T Consensus 174 D---EPt~~LD~~~~~~l~~~l~~~~----~~g~tii~-vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 174 D---EPTASLDAANRQVVVELIAEAK----ARGAALIG-IFHDEEVRELVADRV 219 (224)
T ss_pred c---CCcccCCHHHHHHHHHHHHHHH----hcCCEEEE-EeCCHHHHHHhccee
Confidence 9 9999999988755444332221 11112212 239988888899987
No 335
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.30 E-value=2e-12 Score=135.48 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=106.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......+++|++++|+|+||||||||+++|+|. ..|++|.|.++|.++..+. -.|.||+...
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGI-----------WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 455677889999999999999999999999999 6799999999998765432 1467776433
Q ss_pred cceEEEecccccccccCCCCC--------chhhhhHHH-hhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGL--------GNSFLSHIR-AVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l~-~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+ ...+++.+. ..| --+.++||+ .+|+++++| |
T Consensus 404 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililD---E 480 (544)
T TIGR01842 404 FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD---E 480 (544)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 333445544322210000000 000111110 000 115677777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|..+++.+...+..+. . -.+.+ .-.+|..... ..||++ ..|++|+++..|+.
T Consensus 481 pts~LD~~~~~~i~~~l~~~~---~-~~~tv-i~ith~~~~~-~~~d~i-~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 481 PNSNLDEEGEQALANAIKALK---A-RGITV-VVITHRPSLL-GCVDKI-LVLQDGRIARFGER 537 (544)
T ss_pred CccccCHHHHHHHHHHHHHHh---h-CCCEE-EEEeCCHHHH-HhCCEE-EEEECCEEEeeCCH
Confidence 999999988655433321110 0 01111 1223888754 579998 88899998877653
No 336
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.30 E-value=6.6e-12 Score=133.34 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=109.7
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---ceeEEecCCcchhh--hh--hhccCCCc-
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW--LC--QLFKPKSA- 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p---~~G~i~v~g~~~~~--l~--~~~~~~~~- 85 (394)
-+...+.+++|+.++|+||||||||||+++|+|. ..| .+|.|.++|.++.. .. ..|.||..
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR-----------SPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL 109 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEECCHHHHhhhceeeccccc
Confidence 3677888999999999999999999999999998 334 37999999986532 11 25677663
Q ss_pred cccceEEEecccccccccCCCC--------CchhhhhHHHhh---h-----------------hHHhhhhcc-CCCCeEE
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQG--------LGNSFLSHIRAV---D-----------------GIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~--------l~~~~l~~l~~~---d-----------------~il~vv~a~-~~~~vl~ 136 (394)
....+++.|+..+......... .....++.++.. | .-+.+++++ .+|++++
T Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 3445566665433211100000 000111111100 0 013444555 7899999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH-HHHHHHHHHHHHhcCCCceecCCCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+| ||++++|..........+..+. .-...+.. ++|+.. ++.++||++ .+|.+|++++.|+.+
T Consensus 190 lD---EPtsgLD~~~~~~l~~~L~~l~----~~g~tvi~-~~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 190 CD---EPTSGLDSFMAYSVVQVLKGLA----QKGKTIIC-TIHQPSSELFELFDKI-ILMAEGRVAYLGSPD 252 (617)
T ss_pred ee---CCCcchhHHHHHHHHHHHHHHH----hCCCEEEE-EeCCCCHHHHHHhceE-EEeeCCeEEEECCHH
Confidence 99 9999999998755544332221 11122212 238874 788999999 899999999998764
No 337
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.30 E-value=1.3e-12 Score=137.65 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
.....++++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..+. -.|.||....
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-----------FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 445577899999999999999999999999999 6799999999998765422 1466666433
Q ss_pred cceEEEecccccccccCCCCCch--------hhhhHH----------------HhhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGN--------SFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~--------~~l~~l----------------~~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.........+.. .+...+ ..----+.++|++ .+|+++++| |
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD---E 477 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD---D 477 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 33344454433321100000000 000000 0000114567777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++.+|...++.+...+..+. . .+++ .-.+|....+ ..||++ ..|++|+++..|+
T Consensus 478 pts~LD~~~~~~i~~~l~~~~---~--~~ti-i~itH~~~~~-~~~d~i-~~l~~G~i~~~g~ 532 (569)
T PRK10789 478 ALSAVDGRTEHQILHNLRQWG---E--GRTV-IISAHRLSAL-TEASEI-LVMQHGHIAQRGN 532 (569)
T ss_pred ccccCCHHHHHHHHHHHHHHh---C--CCEE-EEEecchhHH-HcCCEE-EEEeCCEEEEecC
Confidence 999999998755544332110 0 1111 1123888665 458998 7889999887765
No 338
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.29 E-value=3.9e-12 Score=120.17 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=98.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~- 85 (394)
......+.+|+++||+|+||||||||+++|+|... ..|++|.|.++|.++.... ..|.++..
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~ 94 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI 94 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEcccCChhhhheeeEEEEecccc
Confidence 34556789999999999999999999999999621 2588999999887653221 11233321
Q ss_pred cccceEEEecccccccc-------cCCC--CC---chhhhhHHHh----------------hhhHHhhhhcc-CCCCeEE
Q 016139 86 VPAFLEIHDIAGLVRGA-------HEGQ--GL---GNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~-------~~~~--~l---~~~~l~~l~~----------------~d~il~vv~a~-~~~~vl~ 136 (394)
....++..+...+.... .... .. ....+..++. .-.-+.+++++ .+|++++
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 174 (252)
T CHL00131 95 EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAI 174 (252)
T ss_pred ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11111111111000000 0000 00 0000110000 00114456666 7999999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHH-HHHHHHHhcCCCceecCCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l-~~ri~~~L~~g~~~~~~~~ 206 (394)
+| ||++++|....+.....+..+. +-...+.. .+|+...+..+ |+++ .+|++|+++..++.
T Consensus 175 lD---EPt~~LD~~~~~~l~~~l~~~~----~~g~tii~-~tH~~~~~~~~~~d~i-~~l~~G~i~~~~~~ 236 (252)
T CHL00131 175 LD---ETDSGLDIDALKIIAEGINKLM----TSENSIIL-ITHYQRLLDYIKPDYV-HVMQNGKIIKTGDA 236 (252)
T ss_pred Ec---CCcccCCHHHHHHHHHHHHHHH----hCCCEEEE-EecCHHHHHhhhCCEE-EEEeCCEEEEecCh
Confidence 99 9999999998655443322211 10112212 23999888876 8988 88899998877654
No 339
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.29 E-value=3.4e-12 Score=130.21 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=105.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-------hh-h---h-cc
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC-Q---L-FK 81 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-------l~-~---~-~~ 81 (394)
-......+..|+++||||.+|||||||.++|+|+ ..|++|.|.+.|.++.. +. . . ..
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-----------~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQd 375 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGL-----------LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEEeCcccccccchhhhhhhheEEEEeC
Confidence 3566778899999999999999999999999999 67999999998876211 00 0 1 12
Q ss_pred CCCccccceEEEecccccccccCCCC---CchhhhhHHHhhh------------------hHHhhhhcc-CCCCeEEecC
Q 016139 82 PKSAVPAFLEIHDIAGLVRGAHEGQG---LGNSFLSHIRAVD------------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 82 ~~~~~~~~i~~~D~~gl~~~~~~~~~---l~~~~l~~l~~~d------------------~il~vv~a~-~~~~vl~ld~ 139 (394)
|....+...++.+...-.-..+.... ...+..+.+..++ .-+.+++|+ .+|.++++|
T Consensus 376 p~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~D- 454 (539)
T COG1123 376 PYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD- 454 (539)
T ss_pred cccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEec-
Confidence 22222223333222211100010000 0000000000000 014567777 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.+|+....-++..+..+++.+ .-.... .+|++..++.+|||| .+|..|+++..|+
T Consensus 455 --Ep~SaLDvsvqa~VlnLl~~lq~e~---g~t~lf-ISHDl~vV~~i~drv-~vm~~G~iVE~G~ 513 (539)
T COG1123 455 --EPVSALDVSVQAQVLNLLKDLQEEL---GLTYLF-ISHDLAVVRYIADRV-AVMYDGRIVEEGP 513 (539)
T ss_pred --CCccccCHHHHHHHHHHHHHHHHHh---CCEEEE-EeCCHHHHHhhCceE-EEEECCeEEEeCC
Confidence 9999999988655544433333322 211111 139999999999999 9999999998873
No 340
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.9e-12 Score=130.31 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=104.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....+|+.|+++||+|+|||||||++|+|.+. .+ .+|.|.++|+++..... .|.||...-
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc
Confidence 456778999999999999999999999999998 56 89999999998865432 588887544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
.+=+++.+..++...... .+..+.++.+ .--+.+.||+ .+|+++++|
T Consensus 437 FndTIl~NI~YGn~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 437 FNDTILYNIKYGNPSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cchhHHHHhhcCCCCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 333333333332111000 0001111110 0114567777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|...+..++..+ ..... +++ .-..|++..+ .-||+| ..|++|++.-.|+-+
T Consensus 513 ---EaTS~LD~~TE~~i~~~i------~~~~~~rTv-I~IvH~l~ll-~~~DkI-~~l~nG~v~e~gth~ 570 (591)
T KOG0057|consen 513 ---EATSALDSETEREILDMI------MDVMSGRTV-IMIVHRLDLL-KDFDKI-IVLDNGTVKEYGTHS 570 (591)
T ss_pred ---CcccccchhhHHHHHHHH------HHhcCCCeE-EEEEecchhH-hcCCEE-EEEECCeeEEeccHH
Confidence 999999998863332221 11111 000 0012777654 457888 888999887666543
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=1e-12 Score=122.88 Aligned_cols=160 Identities=22% Similarity=0.274 Sum_probs=106.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+.+|+++||||.+|||||||-++|+|+ .+|++|.|.+.|.++..+.. ......-.++++
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-----------~~pt~G~i~f~g~~i~~~~~----~~~~~~v~elL~ 94 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-----------EEPTSGEILFEGKDITKLSK----EERRERVLELLE 94 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-----------cCCCCceEEEcCcchhhcch----hHHHHHHHHHHH
Confidence 346677899999999999999999999999999 78999999999987544330 000000123334
Q ss_pred cccccc-----cccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHH
Q 016139 95 IAGLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV 169 (394)
Q Consensus 95 ~~gl~~-----~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~ 169 (394)
..|+.. .+++ +..-..+++..+-++.. +|++++.| ||++.+|+-.+.-++..+..+++..
T Consensus 95 ~Vgl~~~~~~ryPhe---lSGGQrQRi~IARALal------~P~liV~D---EpvSaLDvSiqaqIlnLL~dlq~~~--- 159 (268)
T COG4608 95 KVGLPEEFLYRYPHE---LSGGQRQRIGIARALAL------NPKLIVAD---EPVSALDVSVQAQILNLLKDLQEEL--- 159 (268)
T ss_pred HhCCCHHHhhcCCcc---cCchhhhhHHHHHHHhh------CCcEEEec---CchhhcchhHHHHHHHHHHHHHHHh---
Confidence 444332 2222 11112355555544444 99999999 9999999977655555444343322
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 170 EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 170 ~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
.-.... .+|++..+..+|||+ .+|..|+++-.++.
T Consensus 160 ~lt~lF-IsHDL~vv~~isdri-~VMy~G~iVE~g~~ 194 (268)
T COG4608 160 GLTYLF-ISHDLSVVRYISDRI-AVMYLGKIVEIGPT 194 (268)
T ss_pred CCeEEE-EEEEHHhhhhhcccE-EEEecCceeEecCH
Confidence 111111 139999999999999 99999999876643
No 342
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=2.6e-12 Score=140.33 Aligned_cols=169 Identities=19% Similarity=0.282 Sum_probs=113.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....++.|+.++|||++||||||+++.|.+. .+|++|.|.++|.++..+.. ....|+.+.
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 346678999999999999999999999999999 68999999999998755432 344566555
Q ss_pred cceEEEecccccccc-cCCC-------CCchhhhhHH-Hhhhh---------------HHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGA-HEGQ-------GLGNSFLSHI-RAVDG---------------IFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~-~~~~-------~l~~~~l~~l-~~~d~---------------il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.++..+++.. ...+ .-...|...+ ...|. -+.++||+ .+|++++|| |
T Consensus 439 F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD---E 515 (1228)
T KOG0055|consen 439 FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD---E 515 (1228)
T ss_pred hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec---C
Confidence 566666666665422 1100 0000111100 00000 15677777 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~-~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.||...+.+....+ ++..+-. -.-.+|.+..+.. +|+| ..+++|+++..|+-
T Consensus 516 aTSaLD~~se~~Vq~AL-------d~~~~grTTivVaHRLStIrn-aD~I-~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 516 ATSALDAESERVVQEAL-------DKASKGRTTIVVAHRLSTIRN-ADKI-AVMEEGKIVEQGTH 571 (1228)
T ss_pred cccccCHHHHHHHHHHH-------HHhhcCCeEEEEeeehhhhhc-cCEE-EEEECCEEEEecCH
Confidence 99999999976654433 2221100 0011399999988 8888 99999999987753
No 343
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.29 E-value=1.3e-12 Score=120.87 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~ 82 (394)
-......++.|++++|+|+||||||||+++|+|. ..|++|.|.++|..+... ...|.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-----------MQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCcccccccccccchhhcceEEEEc
Confidence 3556778899999999999999999999999999 568999999988754321 113555
Q ss_pred CCccccceEEEecccccccccCCCCCchhhhhHHH------h------------h-------hhHHhhhhcc-CCCCeEE
Q 016139 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIR------A------------V-------DGIFHVLRAF-EDPDIIH 136 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~------~------------~-------d~il~vv~a~-~~~~vl~ 136 (394)
|.......++.|...+....... ........+. . . ---+.+++++ .+|++++
T Consensus 86 q~~~~~~~t~~~nl~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 163 (218)
T cd03290 86 QKPWLLNATVEENITFGSPFNKQ--RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVF 163 (218)
T ss_pred CCCccccccHHHHHhhcCcCCHH--HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 54221123333333221110000 0001111100 0 0 0114566776 8999999
Q ss_pred ecCCCCCcchHHHHHHHHHHh--HHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 137 VDDSVDPVRDLEVISAELRLK--DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~--di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+| ||++++|....+.... .+.. +......+.. .+|+...+. .|+++ .+|++|
T Consensus 164 lD---EPt~~LD~~~~~~l~~~~ll~~----~~~~~~tii~-~sH~~~~~~-~~d~i-~~l~~G 217 (218)
T cd03290 164 LD---DPFSALDIHLSDHLMQEGILKF----LQDDKRTLVL-VTHKLQYLP-HADWI-IAMKDG 217 (218)
T ss_pred Ee---CCccccCHHHHHHHHHHHHHHH----HhcCCCEEEE-EeCChHHHh-hCCEE-EEecCC
Confidence 99 9999999988644332 1111 1111112212 238887764 57777 555544
No 344
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.29 E-value=2.1e-12 Score=124.16 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=94.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+..|+++||+|+||||||||+++|+|. ..|++|.|.++|. + .|.+|.......++.|
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-----------~~p~~G~I~i~g~-i-----~yv~q~~~l~~~tv~e 116 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR-I-----SFSSQFSWIMPGTIKE 116 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE-E-----EEEeCcccccccCHHH
Confidence 445567899999999999999999999999999 6789999998772 2 2333331111112222
Q ss_pred cccccccccC---C-----CCCchhhhh---------------HHH-hhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 95 IAGLVRGAHE---G-----QGLGNSFLS---------------HIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 95 ~~gl~~~~~~---~-----~~l~~~~l~---------------~l~-~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
...+...... . .++. ..+. .+. .--.-+.+++++ .+|+++++| ||++++|+
T Consensus 117 nl~~~~~~~~~~~~~~l~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD---EPt~gLD~ 192 (282)
T cd03291 117 NIIFGVSYDEYRYKSVVKACQLE-EDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDV 192 (282)
T ss_pred HhhcccccCHHHHHHHHHHhCCH-HHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccCCH
Confidence 2111100000 0 0000 0000 000 000114456666 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
...+.....+ .+.+.. ...+.. .+|+...+ ..|+++ .+|.+|+++..++
T Consensus 193 ~~~~~l~~~l---l~~~~~-~~tIii-isH~~~~~-~~~d~i-~~l~~G~i~~~g~ 241 (282)
T cd03291 193 FTEKEIFESC---VCKLMA-NKTRIL-VTSKMEHL-KKADKI-LILHEGSSYFYGT 241 (282)
T ss_pred HHHHHHHHHH---HHHhhC-CCEEEE-EeCChHHH-HhCCEE-EEEECCEEEEECC
Confidence 8864433211 111111 112212 23888876 479999 8889999877665
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=99.28 E-value=3e-12 Score=147.69 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=108.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||+..-
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl-----------~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI-----------VELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee
Confidence 445567889999999999999999999999999 78999999999988765432 477877543
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh----------------------------hhhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~----------------------------~d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+.......... +..+.++. -.-.+.++||+ .+|+++++|
T Consensus 1322 F~gTIr~NL~~~~~~sde-----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1322 FSGTVRFNIDPFSEHNDA-----DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred eCccHHHHcCCCCCCCHH-----HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 333444444332211100 00001110 01125677777 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+. +... ..++ ...+|.++.+.. ||+| ..|++|+++..|+.
T Consensus 1397 ---EATSaLD~~Te~~Iq~~L~---~~~~--~~Tv-I~IAHRl~ti~~-~DrI-lVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1397 ---EATASVDVRTDSLIQRTIR---EEFK--SCTM-LVIAHRLNTIID-CDKI-LVLSSGQVLEYDSP 1453 (1495)
T ss_pred ---CCcccCCHHHHHHHHHHHH---HHcC--CCEE-EEEeCCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 9999999988655433221 1100 0111 122499988765 9999 88999999877754
No 346
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.28 E-value=4.3e-12 Score=132.48 Aligned_cols=127 Identities=21% Similarity=0.246 Sum_probs=86.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCCcccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSAVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~~~~~ 88 (394)
+....++++|++++|+||+|||||||+++|+|. .+|++|.|.++|.++..+. -.|.||+..-.
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence 334567889999999999999999999999999 6799999999998876541 14778875544
Q ss_pred ceEEEecccccccccCCCCCc--------hhhhhHH-Hhhh---------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLG--------NSFLSHI-RAVD---------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l-~~~d---------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.-++.|+..+.......+.+. ..+...+ ...| --+.++||+ .+|+++++| ||
T Consensus 421 ~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD---E~ 497 (529)
T TIGR02868 421 DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD---EP 497 (529)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe---CC
Confidence 556666655532211100000 0011100 0000 015677887 899999999 99
Q ss_pred cchHHHHHHHHH
Q 016139 144 VRDLEVISAELR 155 (394)
Q Consensus 144 ~~~ld~i~~el~ 155 (394)
++.+|..++..+
T Consensus 498 TSaLD~~te~~I 509 (529)
T TIGR02868 498 TEHLDAGTESEL 509 (529)
T ss_pred cccCCHHHHHHH
Confidence 999999886544
No 347
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3e-12 Score=113.75 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=107.6
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCC-ccccce
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFL 90 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~-~~~~~i 90 (394)
-+.....+..|+.+.++||+|||||||+|.++|. ..|..|.|.++|+++.--. .....|+ ...+.+
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-----------~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl 89 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-----------VTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWL 89 (259)
T ss_pred hhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-----------cCcccceEEECCEeccCCCccceeEeccCccchhh
Confidence 3556777899999999999999999999999999 7899999999998764322 1233333 444556
Q ss_pred EEEecccccccccC-----CCCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 91 EIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 91 ~~~D~~gl~~~~~~-----~~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
+++|+..+.-.... ......+++..+...+. -+-++||+ -+|+.+++| ||+..+|..
T Consensus 90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD---EPfgAlDa~ 166 (259)
T COG4525 90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD---EPFGALDAL 166 (259)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec---CchhhHHHH
Confidence 77777665422111 00011112211111111 14466777 799999999 999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC--CCceec
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRL 203 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~--g~~~~~ 203 (394)
.+|-.... +-+.|..-.+.+.. .+|+.++..-+.+++ .+|.- |+++..
T Consensus 167 tRe~mQel---Lldlw~~tgk~~ll-iTH~ieEAlflatrL-vvlsp~pgRvv~~ 216 (259)
T COG4525 167 TREQMQEL---LLDLWQETGKQVLL-ITHDIEEALFLATRL-VVLSPGPGRVVER 216 (259)
T ss_pred HHHHHHHH---HHHHHHHhCCeEEE-EeccHHHHHhhhhee-EEecCCCceeeEe
Confidence 87554332 22233222222211 249999988888888 56643 444444
No 348
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.27 E-value=7.2e-12 Score=110.20 Aligned_cols=88 Identities=40% Similarity=0.725 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
.|+|+|++|||||||+|+|++....++++|++|..|+.|.+.+.+. ..+.++|+||+.......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCccccc
Confidence 4899999999999999999998777788999999999999877652 258999999986544443
Q ss_pred CCCchhhhhHHHhhhhHHhhhhcc
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
..+...+++.++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~ 89 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLS 89 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecC
Confidence 345566677777888888877764
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=99.26 E-value=4.4e-12 Score=146.70 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=109.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||...-
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl-----------~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI-----------VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCEecccCCHHHHHhccEEECCCCcc
Confidence 445567899999999999999999999999999 78999999999988754331 477877544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+......... .+..+.++.+ .-.+.++||+ .+|+++++|
T Consensus 1325 F~GTIreNLd~~~~~td-----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1325 FSGTVRFNLDPFNEHND-----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred ccccHHHHhCcCCCCCH-----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44455554433221110 0001111100 1125677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+. +... ..++ ...+|.+..+.. ||+| .+|++|+++..|+.
T Consensus 1400 ---EATSaLD~~Te~~Iq~~I~---~~~~--~~Tv-I~IAHRL~tI~~-~DrI-lVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1400 ---EATAAVDVRTDALIQKTIR---EEFK--SCTM-LIIAHRLNTIID-CDRI-LVLDAGRVVEFDTP 1456 (1622)
T ss_pred ---CCCCCCCHHHHHHHHHHHH---HHCC--CCEE-EEEeCChHHHHh-CCEE-EEEECCEEEEeCCH
Confidence 9999999988755433221 1100 0111 122399988765 8999 88999999877753
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.25 E-value=2.4e-12 Score=138.15 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=96.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
.....+..|+++||+||||||||||+++|+|. ..|++|.|.+.+.. ...|.+|.... .+.+.+.
T Consensus 527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-----------l~p~~G~I~~~~~~----~igyv~Q~~~~-~l~~~~~ 590 (718)
T PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-----------LQPSSGTVFRSAKV----RMAVFSQHHVD-GLDLSSN 590 (718)
T ss_pred ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCceEEECCce----eEEEEeccccc-cCCcchh
Confidence 34567889999999999999999999999999 67999999876421 12234443211 1111111
Q ss_pred cc--ccc-cccCCCCCchhhhhHHHhh---------------hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 96 AG--LVR-GAHEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 96 ~g--l~~-~~~~~~~l~~~~l~~l~~~---------------d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
.- +.. ...........++..+... -.-+.+++++ .+|+++++| ||++++|+...+.+.
T Consensus 591 ~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD---EPT~~LD~~s~~~l~ 667 (718)
T PLN03073 591 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD---EPSNHLDLDAVEALI 667 (718)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHH
Confidence 00 000 0000000000111111100 0114556666 799999999 999999998864432
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-ecCCCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~~~~~~ 207 (394)
. .+..+...+ .-.+|+...+..+|+++ .+|.+|+++ +.++++
T Consensus 668 ~-------~L~~~~gtv-IivSHd~~~i~~~~drv-~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 668 Q-------GLVLFQGGV-LMVSHDEHLISGSVDEL-WVVSEGKVTPFHGTFH 710 (718)
T ss_pred H-------HHHHcCCEE-EEEECCHHHHHHhCCEE-EEEECCEEEEeCCCHH
Confidence 2 222221122 22249999999999999 788899887 455543
No 351
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=4.4e-12 Score=112.70 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=106.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC-cchhhhhh--------hccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQ--------LFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g-~~~~~l~~--------~~~~~~- 84 (394)
......+..|+.-+|||||||||||++-+|+|. .+|+.|.+.+.| .++..+.. +-..|.
T Consensus 22 n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-----------trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-----------TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred eeeEEEecCCeEEEEECCCCCCceeeeeeeccc-----------CCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence 455667899999999999999999999999999 679999999998 55544332 122233
Q ss_pred ccccceEEEecccccccccCC--CCCchhhh-hHHHhhhhHHh------------------------hhhcc-CCCCeEE
Q 016139 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFL-SHIRAVDGIFH------------------------VLRAF-EDPDIIH 136 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~~--~~l~~~~l-~~l~~~d~il~------------------------vv~a~-~~~~vl~ 136 (394)
.++..++++|+.-+.....+. ..+..++. ..-+..|-++. +--.+ ++|.++.
T Consensus 91 tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 91 TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE
Confidence 556677777776665433321 11111100 00011111111 11112 7899999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+| ||+.++---+.+-.- .+-+.+..-... .-..|+|..+.++.+++ -.|++|.+++.|+++
T Consensus 171 lD---EPvAGMTd~Et~~ta----eLl~~la~~hsi--lVVEHDM~Fvr~~A~~V-TVlh~G~VL~EGsld 231 (249)
T COG4674 171 LD---EPVAGMTDAETEKTA----ELLKSLAGKHSI--LVVEHDMGFVREIADKV-TVLHEGSVLAEGSLD 231 (249)
T ss_pred ec---CccCCCcHHHHHHHH----HHHHHHhcCceE--EEEeccHHHHHHhhhee-EEEeccceeecccHH
Confidence 99 998876544321111 111111110000 01129999999999999 999999999998875
No 352
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=1.9e-11 Score=106.62 Aligned_cols=167 Identities=21% Similarity=0.289 Sum_probs=96.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----------hccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~~~ 83 (394)
+.....+..|+.++||||+|||||||+-.++|+ -+|++|.|.+.|+.+..+.+ .|..|
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-----------d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-----------DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-----------CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 455667889999999999999999999999999 57999999999998765543 23333
Q ss_pred C-ccccceEEEecccc---cccccCCCC--CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGL---VRGAHEGQG--LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl---~~~~~~~~~--l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ...++++-.++..+ ..+...... ...+.+..+.... --+.+.||| ..|++++.| |
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD---E 172 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD---E 172 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc---C
Confidence 3 11122333333322 222111000 0111122211111 125688999 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
|+..+|.-.-+-+...+-.+.+ +. ..+. .-.+|+... -.=|+|+ .-|..|++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnr--e~-G~Tl-VlVTHD~~L-A~Rc~R~-~r~~~G~l~ 225 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNR--ER-GTTL-VLVTHDPQL-AARCDRQ-LRLRSGRLV 225 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhh--hc-CceE-EEEeCCHHH-HHhhhhe-eeeecceec
Confidence 9999998774333222211111 10 0010 111376643 3447777 556667654
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.24 E-value=3.4e-12 Score=135.96 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=51.5
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
+.+++++ .+|+++++| ||++++|+...+.+ .+.+..+...+.. .+|+...+..+|+++ ..|++|+++
T Consensus 165 v~LAraL~~~P~lLLLD---EPt~~LD~~~~~~L-------~~~L~~~~~tvli-vsHd~~~l~~~~d~i-~~L~~G~i~ 232 (635)
T PRK11147 165 AALGRALVSNPDVLLLD---EPTNHLDIETIEWL-------EGFLKTFQGSIIF-ISHDRSFIRNMATRI-VDLDRGKLV 232 (635)
T ss_pred HHHHHHHhcCCCEEEEc---CCCCccCHHHHHHH-------HHHHHhCCCEEEE-EeCCHHHHHHhcCeE-EEEECCEEE
Confidence 4556666 799999999 99999999885433 2222222222212 249999999999999 888999986
Q ss_pred -ecCCCC
Q 016139 202 -RLGDWK 207 (394)
Q Consensus 202 -~~~~~~ 207 (394)
+.|+++
T Consensus 233 ~~~g~~~ 239 (635)
T PRK11147 233 SYPGNYD 239 (635)
T ss_pred EecCCHH
Confidence 446654
No 354
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.4e-12 Score=131.62 Aligned_cols=165 Identities=13% Similarity=0.216 Sum_probs=112.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++++|+++|||||+|+||||+.+.|.+. .+|++|.|.++|.++..+.- .+..|+.+-
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL 553 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL 553 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee
Confidence 456778899999999999999999999999999 67999999999998765432 356677666
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHH--hhhh--------------------------HHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIR--AVDG--------------------------IFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~--~~d~--------------------------il~vv~a~-~~~~vl~ld 138 (394)
+.-++.|+..++......+ ...+..+ +|+- -+.++||+ .+|.|++||
T Consensus 554 Fs~sI~eNI~YG~~~~t~e----~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 554 FSGSIRENIAYGLDNATDE----EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred ecccHHHHHhcCCCCCCHH----HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 6667777776654321111 1111111 1110 15677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|.++.||...+.+....+..+ .+. +++ ....|.+..++. .|+| .++++|++...|+
T Consensus 630 ---EATSALDaeSE~lVq~aL~~~---~~~--rTV-lvIAHRLSTV~~-Ad~I-vvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 630 ---EATSALDAESEYLVQEALDRL---MQG--RTV-LVIAHRLSTVRH-ADQI-VVIDKGRVVEMGT 685 (716)
T ss_pred ---chhhhcchhhHHHHHHHHHHh---hcC--CeE-EEEehhhhHhhh-ccEE-EEEcCCeEEeccc
Confidence 999999999876654443222 211 111 112387776643 5666 7889998887764
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.22 E-value=2.5e-12 Score=132.81 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=92.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc-chhhhhhhccCCCc--cccceE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSA--VPAFLE 91 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~-~~~~l~~~~~~~~~--~~~~i~ 91 (394)
.++...+.+|++||||||||+||||||++|+|. ..|.+|.|.+... .+. |.+|.. .....+
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-----------~~~~~G~v~~g~~v~ig-----yf~Q~~~~l~~~~t 402 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-----------LGPLSGTVKVGETVKIG-----YFDQHRDELDPDKT 402 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-----------cccCCceEEeCCceEEE-----EEEehhhhcCccCc
Confidence 456677889999999999999999999999998 6688998886532 222 222221 001112
Q ss_pred EEeccccccccc-C--------CCCCc-hhhhhHHHhh----hhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHH
Q 016139 92 IHDIAGLVRGAH-E--------GQGLG-NSFLSHIRAV----DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (394)
Q Consensus 92 ~~D~~gl~~~~~-~--------~~~l~-~~~l~~l~~~----d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~ 156 (394)
++|...-..... . ..++. ......++.- ..-+.++..+ ..|++++|| ||+++||+...
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD---EPTNhLDi~s~---- 475 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD---EPTNHLDIESL---- 475 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc---CCCccCCHHHH----
Confidence 222111000000 0 00000 0000000000 0113333333 699999999 99999999883
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce-ecCCCC
Q 016139 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (394)
Q Consensus 157 ~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~-~~~~~~ 207 (394)
+.+++.+..+.-.+..- +|+...+..+|+++ ..++. .+. +.|+++
T Consensus 476 ---~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i-~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 476 ---EALEEALLDFEGTVLLV-SHDRYFLDRVATRI-WLVED-KVEEFEGGYE 521 (530)
T ss_pred ---HHHHHHHHhCCCeEEEE-eCCHHHHHhhcceE-EEEcC-ceeEcCCCHH
Confidence 33555555544333222 39999999999998 44443 333 335554
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.22 E-value=1e-11 Score=142.23 Aligned_cols=178 Identities=14% Similarity=0.151 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-hh--hhccCCC-ccccce
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKS-AVPAFL 90 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-l~--~~~~~~~-~~~~~i 90 (394)
+...+.+++|+.+||+||||||||||+++|+|... .-.|++|.|.++|.++.. +. ..|.+|. .....+
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~--------~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--------TGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCcceeEEEECCEECChhhhcceeeecccccCCCCC
Confidence 44567788999999999999999999999999821 012688999999987632 11 2466665 334445
Q ss_pred EEEecccccccccCCCCC--------chhhhhHHHh---hh---------------hHHhhhhcc-CCCC-eEEecCCCC
Q 016139 91 EIHDIAGLVRGAHEGQGL--------GNSFLSHIRA---VD---------------GIFHVLRAF-EDPD-IIHVDDSVD 142 (394)
Q Consensus 91 ~~~D~~gl~~~~~~~~~l--------~~~~l~~l~~---~d---------------~il~vv~a~-~~~~-vl~ld~~~e 142 (394)
++.++..+.......... ....++.++. .| -.+.+.+++ .+|+ ++++| |
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLD---E 928 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD---E 928 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEc---C
Confidence 666654432110000000 0011111110 01 013344555 6896 99999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHH-HHHHHHHHHHHhcCC-CceecCCCChh
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI-EHELCQRVKAWLQDG-KDVRLGDWKAA 209 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~-~~~l~~ri~~~L~~g-~~~~~~~~~~~ 209 (394)
|++++|......+...+..+.+ -...+ .-++|+... +...||++ .+|.+| ++++.|+..+.
T Consensus 929 PTsgLD~~~~~~i~~~L~~la~----~g~tv-I~t~H~~~~~~~~~~D~v-l~L~~GG~iv~~G~~~~~ 991 (1394)
T TIGR00956 929 PTSGLDSQTAWSICKLMRKLAD----HGQAI-LCTIHQPSAILFEEFDRL-LLLQKGGQTVYFGDLGEN 991 (1394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH----cCCEE-EEEecCCCHHHHHhcCEE-EEEcCCCEEEEECCcccc
Confidence 9999999987555444332211 11222 222398876 45789999 888887 99888876543
No 357
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.21 E-value=4.7e-12 Score=105.08 Aligned_cols=86 Identities=31% Similarity=0.439 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
+|+|+|++|||||||+|+|++... .+++.|++|..+..+.+.+++. .+.++|+||+......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK-----------------KFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE-----------------EEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee-----------------eEEEEeCCCCcccchh
Confidence 589999999999999999999754 4589999999998888887753 4689999999765433
Q ss_pred CC--CCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQ--GLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~--~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....+++.++.+|++++|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~ 89 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDA 89 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEEC
Confidence 21 1222455666777777776663
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.21 E-value=1.3e-11 Score=142.64 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=107.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||+..-
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl-----------~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~L 1371 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI-----------NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVL 1371 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcc
Confidence 345567889999999999999999999999999 78999999999998765432 467777543
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh----------------------------hhhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~----------------------------~d~il~vv~a~-~~~~vl~ld 138 (394)
..-++.++.......... +..+.++. -.-.+.++||+ .+|+++++|
T Consensus 1372 F~gTIr~NLdp~~~~sde-----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1372 FSGSLRMNLDPFSQYSDE-----EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred cCccHHHHcCcccCCCHH-----HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 333444443211111000 00000000 01125677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|..++..+...+. +... ..++ ...+|.+..+.. ||+| .+|++|+++..|+.
T Consensus 1447 ---EaTSalD~~Te~~Iq~~l~---~~~~--~~Tv-I~IAHRl~ti~~-~DrI-lVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1447 ---EATAAVDLETDNLIQSTIR---TQFE--DCTV-LTIAHRLNTIMD-YTRV-IVLDKGEVAEFGAP 1503 (1522)
T ss_pred ---CCcccCCHHHHHHHHHHHH---HHcC--CCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 9999999988655433221 1100 0111 122388877654 8999 88999999887764
No 359
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.20 E-value=6.2e-12 Score=131.86 Aligned_cols=166 Identities=16% Similarity=0.083 Sum_probs=98.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----h--hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~ 87 (394)
......+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.... . .|.||+...
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 408 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL 408 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH
Confidence 345567789999999999999999999999999 6799999999998764321 1 356665322
Q ss_pred cceEEEec---------------ccccccccCCCCC--chhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 88 AFLEIHDI---------------AGLVRGAHEGQGL--GNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 88 ~~i~~~D~---------------~gl~~~~~~~~~l--~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
..-++.++ .++......+.+. +.. ++ ..----+.++||+ .+|+++++| ||++.+|.
T Consensus 409 f~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~-LS--gGq~qRl~lARal~~~~~ililD---E~ts~LD~ 482 (547)
T PRK10522 409 FDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLK-LS--KGQKKRLALLLALAEERDILLLD---EWAADQDP 482 (547)
T ss_pred HHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCC-CC--HHHHHHHHHHHHHhcCCCEEEEE---CCCCCCCH
Confidence 22222222 0110000000000 000 00 0000114566776 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
.++..+...+ .+....-..++ .-.+|.... ...||++ ..|++|++...
T Consensus 483 ~~~~~i~~~l---~~~~~~~~~tv-i~itH~~~~-~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 483 HFRREFYQVL---LPLLQEMGKTI-FAISHDDHY-FIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHH---HHHHHhCCCEE-EEEEechHH-HHhCCEE-EEEECCEEEEe
Confidence 8865443322 11111001111 112388754 4579998 88899988744
No 360
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.20 E-value=3.5e-11 Score=105.28 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=105.2
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCC-c
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS-A 85 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~-~ 85 (394)
--+..+.+..|+++-+|||||||||||+..++|+ .|-+|.|.+.|.++...+. .|..|. .
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~ 82 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQT 82 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCC------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhccC
Confidence 3567888999999999999999999999999998 3789999999998754321 354443 3
Q ss_pred cccceEEEecccccccccCC----------CCCchhh-----------hhHHHhhhhHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 VPAFLEIHDIAGLVRGAHEG----------QGLGNSF-----------LSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~----------~~l~~~~-----------l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.++.+.++....+....... ..+.++. ++++|.+-+.+.|--.. .+..++++| ||
T Consensus 83 p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD---EP 159 (248)
T COG4138 83 PPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD---EP 159 (248)
T ss_pred CcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec---CC
Confidence 33444444443333222110 0011111 12233333333332222 233478899 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.+.+|+-.+......+ ..+..-...+..++ |+++...+-.+++ -+|..|+.+..|.
T Consensus 160 ~~~LDvAQ~~aLdrll----~~~c~~G~~vims~-HDLNhTLrhA~~~-wLL~rG~l~~~G~ 215 (248)
T COG4138 160 MNSLDVAQQSALDRLL----SALCQQGLAIVMSS-HDLNHTLRHAHRA-WLLKRGKLLASGR 215 (248)
T ss_pred CcchhHHHHHHHHHHH----HHHHhCCcEEEEec-cchhhHHHHHHHH-HHHhcCeEEeecc
Confidence 9999998754332221 11222222222333 8888888888999 8899999998875
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=99.20 E-value=4.7e-12 Score=133.36 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=88.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEe-----------cCCcchhhhhh---------h
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ---------L 79 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~-----------v~g~~~~~l~~---------~ 79 (394)
.+++|+++||+||||||||||+++|+|. ..|+.|.|. +.|.++..... .
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 6889999999999999999999999999 679999997 67766532211 1
Q ss_pred ccCCCc--cccc--eEEEecccccccccCCCCCchhhhhHHHhh--------------hhHHhhhhcc-CCCCeEEecCC
Q 016139 80 FKPKSA--VPAF--LEIHDIAGLVRGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDS 140 (394)
Q Consensus 80 ~~~~~~--~~~~--i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~--------------d~il~vv~a~-~~~~vl~ld~~ 140 (394)
+.+|.. .+.. .++.|...... .......+++.+... -..+.+++++ .+|+++++|
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLD-- 237 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKVD----ERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD-- 237 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhhh----HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE--
Confidence 122210 0000 01111100000 000000011111000 0114455666 799999999
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 016139 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (394)
Q Consensus 141 ~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~ 197 (394)
||++.||+...+.+...+..+ .+ ...+ .-.+|++..+..+||++ .+|..
T Consensus 238 -EPts~LD~~~~~~l~~~i~~l----~~-g~tv-IivsHd~~~l~~~~D~v-~vl~~ 286 (590)
T PRK13409 238 -EPTSYLDIRQRLNVARLIREL----AE-GKYV-LVVEHDLAVLDYLADNV-HIAYG 286 (590)
T ss_pred -CCCCCCCHHHHHHHHHHHHHH----HC-CCEE-EEEeCCHHHHHHhCCEE-EEEeC
Confidence 999999999865544433222 11 2222 12249999999999999 77764
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=4.5e-11 Score=103.96 Aligned_cols=129 Identities=17% Similarity=0.139 Sum_probs=82.2
Q ss_pred CCCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccC
Q 016139 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (394)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~ 82 (394)
.++--.+....+..|+.++|.||+|||||||+++++.+ +.|++|.+.+.|+++..+.. .|..
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 33444677888999999999999999999999999999 78999999999998754321 2433
Q ss_pred CCccccceEEEecccccccccCCCCCchhhhhHHHhhh------------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD------------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d------------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
|...-..-++.|+.-+.-..+...--...+++.+..++ -.+.++|-+ --|+++.|| ||
T Consensus 84 Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD---E~ 160 (223)
T COG4619 84 QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD---EI 160 (223)
T ss_pred cCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec---Cc
Confidence 43222223444544332111110000111111111111 124566666 679999999 99
Q ss_pred cchHHHHHH
Q 016139 144 VRDLEVISA 152 (394)
Q Consensus 144 ~~~ld~i~~ 152 (394)
++.+|.-+.
T Consensus 161 TsALD~~nk 169 (223)
T COG4619 161 TSALDESNK 169 (223)
T ss_pred hhhcChhhH
Confidence 999998885
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.20 E-value=1.4e-11 Score=142.19 Aligned_cols=165 Identities=14% Similarity=0.192 Sum_probs=107.5
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----h--hccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~~ 88 (394)
.....|++|+++||||++|||||||+++|+|. .+|++|.|.++|.++..+. . .+.||...-.
T Consensus 1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl-----------~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM-----------VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 34467789999999999999999999999999 7899999999998875433 1 5778875444
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHh----------------------------hhhHHhhhhcc-CC-CCeEEec
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-ED-PDIIHVD 138 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~----------------------------~d~il~vv~a~-~~-~~vl~ld 138 (394)
.-++.++......... .+..+.++. ---.+.++||+ .+ +.++++|
T Consensus 1397 ~gTIreNIdp~~~~sd-----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1397 DGTVRQNVDPFLEASS-----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred cccHHHHhCcccCCCH-----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444444322111110 001111110 01125677887 54 8999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|...+..+...+. +... ..++ ...+|.+..+ .-||+| .+|++|+++..|+..
T Consensus 1472 ---EATSaLD~~te~~Iq~~L~---~~~~--~~Tv-I~IAHRl~ti-~~~DrI-lVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1472 ---EATANIDPALDRQIQATVM---SAFS--AYTV-ITIAHRLHTV-AQYDKI-IVMDHGAVAEMGSPR 1529 (1560)
T ss_pred ---CCCccCCHHHHHHHHHHHH---HHCC--CCEE-EEEeccHHHH-HhCCEE-EEEECCEEEEECCHH
Confidence 9999999988755433221 1100 0111 1223988766 458999 899999998877643
No 364
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.19 E-value=2.1e-11 Score=127.32 Aligned_cols=127 Identities=21% Similarity=0.339 Sum_probs=84.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+....++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. -.|.||+..-
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l 407 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-----------VDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL 407 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc
Confidence 455678899999999999999999999999999 6799999999998775432 1467777443
Q ss_pred cceEEEecccccccccCCCCC--------chhhhhHHH-hhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGL--------GNSFLSHIR-AVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l~-~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.......+.+ ...+.+.+. ..| --+.++||+ .+|+++++| |
T Consensus 408 f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD---E 484 (529)
T TIGR02857 408 FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD---E 484 (529)
T ss_pred cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 344555554443211100000 000110000 000 115677887 899999999 9
Q ss_pred CcchHHHHHHHHH
Q 016139 143 PVRDLEVISAELR 155 (394)
Q Consensus 143 P~~~ld~i~~el~ 155 (394)
|++.+|..+++.+
T Consensus 485 ~ts~lD~~~~~~i 497 (529)
T TIGR02857 485 PTAHLDAETEALV 497 (529)
T ss_pred cccccCHHHHHHH
Confidence 9999999997544
No 365
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.19 E-value=5.3e-12 Score=134.72 Aligned_cols=172 Identities=20% Similarity=0.195 Sum_probs=105.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h--hhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~--~~~~~~ 83 (394)
+.....+.+|++++|+|+||+|||||+++|+|. ..|++|.+.++|+++... . ..|.+|
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 93 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCL-----------DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQ 93 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeC
Confidence 566677899999999999999999999999999 669999999999765321 1 135555
Q ss_pred Cc-cccceEEEecccccc---cccCC--CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 SA-VPAFLEIHDIAGLVR---GAHEG--QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~~-~~~~i~~~D~~gl~~---~~~~~--~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
.. .+..+++.|...+.. +.... ......+++.++..+ .-+.+++++ .+|+++++| |
T Consensus 94 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllD---E 170 (648)
T PRK10535 94 RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD---E 170 (648)
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 42 222233333222110 00000 000001111111000 115577777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|+.++|....+.....+..+. +....+.. .+|+.+... .||++ .+|++|++...++.+
T Consensus 171 P~~gLD~~s~~~l~~ll~~l~----~~g~tili-vsH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 171 PTGALDSHSGEEVMAILHQLR----DRGHTVII-VTHDPQVAA-QAERV-IEIRDGEIVRNPPAQ 228 (648)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----hcCCEEEE-ECCCHHHHH-hCCEE-EEEECCEEEeecCcc
Confidence 999999999755444332221 11112212 238888765 69999 889999988776554
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.18 E-value=2.2e-11 Score=109.02 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--hhhhccCCCccccceEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKPKSAVPAFLEI 92 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~~~~~~~~~~~~~i~~ 92 (394)
.....+++.|++++|+||||||||||+|++.+ ++|.+.+.+..-.. ....|.++ ..+
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~~~~~~~~~~~~~q------~~~ 70 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFLPKFSRNKLIFIDQ------LQF 70 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcccccccccEEEEhH------HHH
Confidence 56677899999999999999999999999863 35566555431000 00112211 112
Q ss_pred Eeccccccc-ccC-CCCCchhhhhHHHhhhhHHhhhhcc-CC--CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHH
Q 016139 93 HDIAGLVRG-AHE-GQGLGNSFLSHIRAVDGIFHVLRAF-ED--PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIE 167 (394)
Q Consensus 93 ~D~~gl~~~-~~~-~~~l~~~~l~~l~~~d~il~vv~a~-~~--~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~ 167 (394)
++..++... ... ...+..-..+++ .+++++ .+ |+++++| ||++++|....+.+...+..+.
T Consensus 71 l~~~~L~~~~~~~~~~~LSgGq~qrl-------~laral~~~~~p~llLlD---EPt~~LD~~~~~~l~~~l~~~~---- 136 (176)
T cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRV-------KLASELFSEPPGTLFILD---EPSTGLHQQDINQLLEVIKGLI---- 136 (176)
T ss_pred HHHcCCCccccCCCcCcCCHHHHHHH-------HHHHHHhhCCCCCEEEEe---CCcccCCHHHHHHHHHHHHHHH----
Confidence 223333211 000 011111111233 334444 47 9999999 9999999998765544432221
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHHhcCCCc
Q 016139 168 DVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 168 ~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
+....+.. .+|+...+ ..|+++ ..|.+|+.
T Consensus 137 ~~g~tvIi-vSH~~~~~-~~~d~i-~~l~~g~~ 166 (176)
T cd03238 137 DLGNTVIL-IEHNLDVL-SSADWI-IDFGPGSG 166 (176)
T ss_pred hCCCEEEE-EeCCHHHH-HhCCEE-EEECCCCC
Confidence 11112212 23888876 578888 67776654
No 367
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.18 E-value=9e-12 Score=130.85 Aligned_cols=165 Identities=18% Similarity=0.085 Sum_probs=96.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----h--hccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~~ 88 (394)
.....+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++.... . .+.+|...-.
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 428 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhh
Confidence 35567889999999999999999999999999 6799999999998765322 1 3455542211
Q ss_pred ceEEEecccccccccCC--------CCCch---------hhhhHH-HhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 89 FLEIHDIAGLVRGAHEG--------QGLGN---------SFLSHI-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~--------~~l~~---------~~l~~l-~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
.-++.++. .+..... .++.. .....+ ..-.--+.++|++ .+|+++++| ||++++|.
T Consensus 429 ~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD---E~ts~LD~ 503 (555)
T TIGR01194 429 DDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD---EWAADQDP 503 (555)
T ss_pred hhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCH
Confidence 11122211 0000000 00000 000000 0001124566776 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCcee
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~ 202 (394)
.+++.+...+. +.+....+++ .-.+|....+ ..||++ ..|++|+++.
T Consensus 504 ~~~~~i~~~l~---~~~~~~~~ti-iiisH~~~~~-~~~d~i-~~l~~G~i~~ 550 (555)
T TIGR01194 504 AFKRFFYEELL---PDLKRQGKTI-IIISHDDQYF-ELADQI-IKLAAGCIVK 550 (555)
T ss_pred HHHHHHHHHHH---HHHHhCCCEE-EEEeccHHHH-HhCCEE-EEEECCEEEE
Confidence 98755433221 1110001111 1123888654 579998 7888888753
No 368
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.8e-11 Score=124.31 Aligned_cols=87 Identities=34% Similarity=0.486 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc--
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA-- 102 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~-- 102 (394)
..++++|.||+|||||||+|||.+..++|+|+.|.+...|.....|. .++++|+||.+.-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~-----------------~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH-----------------EIEIVDLPGTYSLTAY 66 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc-----------------eEEEEeCCCcCCCCCC
Confidence 35999999999999999999999999999999999999999999874 38999999997432
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+.++.....|+.. ...|++++|+||.
T Consensus 67 S~DE~Var~~ll~-~~~D~ivnVvDAt 92 (653)
T COG0370 67 SEDEKVARDFLLE-GKPDLIVNVVDAT 92 (653)
T ss_pred CchHHHHHHHHhc-CCCCEEEEEcccc
Confidence 3333333344321 4578999999984
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.17 E-value=2.5e-11 Score=139.00 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=108.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---eeEEecCCcchhhhh----hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~~~~l~----~~~~~~~-~~ 86 (394)
+...+.+++|+.++|+||||||||||+++|+|. ..|+ +|.|.++|.++.... ..|.+|. ..
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~-----------l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK-----------LDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEechhhcccceeEEecccccC
Confidence 556788899999999999999999999999998 5566 899999998764322 2466665 34
Q ss_pred ccceEEEecccccccccC-CC------CCc--------------------------------hhhhhHHHhhhh------
Q 016139 87 PAFLEIHDIAGLVRGAHE-GQ------GLG--------------------------------NSFLSHIRAVDG------ 121 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~-~~------~l~--------------------------------~~~l~~l~~~d~------ 121 (394)
...+++.++..+...... +. ... +..++.++..+.
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 445666666544211000 00 000 001111111000
Q ss_pred -------------HHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhh-HHHHH
Q 016139 122 -------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHE 186 (394)
Q Consensus 122 -------------il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~~~~ 186 (394)
-+.+.+++ .+|+++++| ||+++||......+...+..+.+ .....+..+ +|+. .++..
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllD---EPTsGLDs~t~~~i~~~Lr~la~---~~g~Tviis-~Hqp~~~i~~ 403 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMD---EISTGLDSSTTYQIVKCLQQIVH---LTEATVLMS-LLQPAPETFD 403 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEe---CCCcCccHHHHHHHHHHHHHHHH---hcCCEEEEE-ecCCCHHHHH
Confidence 02233334 678999999 99999999987554443322211 011122122 2764 68889
Q ss_pred HHHHHHHHhcCCCceecCCC
Q 016139 187 LCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 187 l~~ri~~~L~~g~~~~~~~~ 206 (394)
++|++ .+|.+|++++.|+.
T Consensus 404 lfD~v-ilL~~G~ivy~G~~ 422 (1470)
T PLN03140 404 LFDDI-ILLSEGQIVYQGPR 422 (1470)
T ss_pred HhheE-EEeeCceEEEeCCH
Confidence 99999 89999999998864
No 370
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=4.4e-11 Score=105.34 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=46.2
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (394)
+-++...+++.|..+|+||.||||||||.++|+|. +.|++|.|.++|..+.
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-----------i~PTsG~il~n~~~L~ 78 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGEILINDHPLH 78 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-----------cCCCCceEEECCcccc
Confidence 34677788999999999999999999999999999 8899999999998764
No 371
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.16 E-value=1.4e-11 Score=127.55 Aligned_cols=170 Identities=16% Similarity=0.252 Sum_probs=97.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ceeEEecCCcchhh------h--hhhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------L--CQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~~~~------l--~~~~~~~~~ 85 (394)
......+..|+++||+||||||||||+++|+|. ..| ++|.|.++|.++.. . ...|.+|..
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-----------HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 345567789999999999999999999999997 333 68999998864311 1 113444431
Q ss_pred -cccc--eEEEecc--cccc--cccC---C--CCCchhhhhHHHhhh---------------hHHhhhhcc-CCCCeEEe
Q 016139 86 -VPAF--LEIHDIA--GLVR--GAHE---G--QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 86 -~~~~--i~~~D~~--gl~~--~~~~---~--~~l~~~~l~~l~~~d---------------~il~vv~a~-~~~~vl~l 137 (394)
.... ..+.+.. ++.. .... . ......+++.+...+ .-+.+++++ .+|+++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 425 (490)
T PRK10938 346 HLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLIL 425 (490)
T ss_pred HhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1000 1111111 0000 0000 0 000011111111111 114566776 79999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHH-HHHHHHHHhcCCCceec
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~-l~~ri~~~L~~g~~~~~ 203 (394)
| ||++++|+...+.+...+..+.+ .-...+.. .+|+...+.. +|+++ .+|.+|+++..
T Consensus 426 D---EPt~gLD~~~~~~l~~~L~~l~~---~~~~tvii-vsHd~~~~~~~~~d~v-~~l~~G~i~~~ 484 (490)
T PRK10938 426 D---EPLQGLDPLNRQLVRRFVDVLIS---EGETQLLF-VSHHAEDAPACITHRL-EFVPDGDIYRY 484 (490)
T ss_pred c---CccccCCHHHHHHHHHHHHHHHh---cCCcEEEE-EecchhhhhhhhheeE-EEecCCceEEe
Confidence 9 99999999987555444332211 10111212 2399999987 58888 88999988755
No 372
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.15 E-value=2e-11 Score=121.50 Aligned_cols=94 Identities=27% Similarity=0.324 Sum_probs=78.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.++.|.+++|+|+||||||||||+|++.+.++ ++.|+||++.....+.++|.+ +.++||+|+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p-----------------v~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP-----------------VRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE-----------------EEEEecCCc
Confidence 46789999999999999999999999999877 999999999999999999953 899999999
Q ss_pred cccccCCCCCc-hhhhhHHHhhhhHHhhhhccC
Q 016139 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAFE 130 (394)
Q Consensus 99 ~~~~~~~~~l~-~~~l~~l~~~d~il~vv~a~~ 130 (394)
......-+..| .+....++.||.+++|+|+.+
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 85443222222 355678899999999998874
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.14 E-value=1.1e-11 Score=105.74 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=42.8
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~ 75 (394)
....+.+|++++|+|+||||||||+++|+|. ..|++|.|.+++.++..
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~-----------~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGL-----------LPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTS-----------SHESEEEEEETTEEGTT
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeeccc-----------ccccccccccccccccc
Confidence 3467889999999999999999999999999 67899999999887654
No 374
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.14 E-value=4.2e-11 Score=137.18 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=108.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh------hhccCCC-ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS-AVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~------~~~~~~~-~~~ 87 (394)
+...+.+++|+.++|+||||||||||+|+|+|.... ...|.+|.|.++|.++.... ..|.+|. ...
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-------~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-------FHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-------CCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 456678899999999999999999999999998310 02468999999998764322 1455665 334
Q ss_pred cceEEEecccccccccC----CCCCch---------hhhhHHHhhhh-------------------HHhhhhcc-CCCCe
Q 016139 88 AFLEIHDIAGLVRGAHE----GQGLGN---------SFLSHIRAVDG-------------------IFHVLRAF-EDPDI 134 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~----~~~l~~---------~~l~~l~~~d~-------------------il~vv~a~-~~~~v 134 (394)
..+++.++..+...... ..+... ..++.+...+. -+.+++++ .+|++
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 44566665543211000 000000 01111110000 03344444 68999
Q ss_pred EEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhh-HHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 135 l~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+++| ||+++||..........+..+.+. ....+..+ +|+. ..+..++|++ .+|.+|++++.|+.+
T Consensus 231 lllD---EPTsgLD~~~~~~i~~~L~~la~~---~g~tvii~-~Hq~~~~i~~l~D~v-~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 231 QCWD---NATRGLDSATALEFIRALKTSANI---LDTTPLVA-IYQCSQDAYELFDKV-IVLYEGYQIYFGPAD 296 (1394)
T ss_pred EEEe---CCCCCcCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCCCHHHHHhhceE-EEEeCCeEEEECCHH
Confidence 9999 999999999875554433322211 11122122 3875 6888999999 889999999887643
No 375
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.12 E-value=2e-11 Score=140.12 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=116.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------------------
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA------------------------------------------- 51 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~------------------------------------------- 51 (394)
+.....+++|+++||||++|||||||+++|+|.+.+.
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4456788999999999999999999999999996541
Q ss_pred CCCCccccCCceeEEecCCcchhhhh-----h--hccCCCccccceEEEecccccccccCCCCCchhhhhHHHhhh----
Q 016139 52 ENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD---- 120 (394)
Q Consensus 52 ~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d---- 120 (394)
..-+-.|..|++|.|.++|.++..+. . .|.||+..-+..++.|+..+....... .+..+.++.+.
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~----eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR----EDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH----HHHHHHHHHcCCHHH
Confidence 01123455678999999999875433 1 578888666667777776665321110 01111111110
Q ss_pred ------------------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 016139 121 ------------------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR 175 (394)
Q Consensus 121 ------------------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~ 175 (394)
--+.++||+ .+|++++|| ||++.||..++..+...+..+.. .-.+++ .
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD---EaTSaLD~~sE~~I~~~L~~~~~---~~~~Tv-I 1413 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD---EATSSLDSNSEKLIEKTIVDIKD---KADKTI-I 1413 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHHHHHHHHhc---cCCCEE-E
Confidence 015677887 899999999 99999999987655443322110 001111 1
Q ss_pred ccchhhHHHHHHHHHHHHHhcC----CCce-ecCCC
Q 016139 176 SNDKQLKIEHELCQRVKAWLQD----GKDV-RLGDW 206 (394)
Q Consensus 176 ~~~h~~~~~~~l~~ri~~~L~~----g~~~-~~~~~ 206 (394)
..+|.+..+. .||+| .+|++ |+++ ..|+.
T Consensus 1414 iIaHRlsti~-~aD~I-vvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1414 TIAHRIASIK-RSDKI-VVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred EEechHHHHH-hCCEE-EEEeCCCCCCCEEEEecCH
Confidence 2239887664 58999 88888 8855 45653
No 376
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=3.2e-10 Score=119.96 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=117.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--hh--hhccCCC-ccccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS-AVPAF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~--~~~~~~~-~~~~~ 89 (394)
+...|.+++|+..||+||.|||||||+|+|+|.... --..+|.|.++|++... .. ..|.+|. .....
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~--------~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG--------GLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC--------CCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 667788899999999999999999999999998420 02578999999954321 11 2466655 33445
Q ss_pred eEEEecccccccccCCCCCc--------hhhh--------------------------hHHHhhhhHHhhhhccCCCCeE
Q 016139 90 LEIHDIAGLVRGAHEGQGLG--------NSFL--------------------------SHIRAVDGIFHVLRAFEDPDII 135 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~--------~~~l--------------------------~~l~~~d~il~vv~a~~~~~vl 135 (394)
+++.++.-+.........+. +..+ +++..+-- ...+|.++
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E------ll~~P~iL 192 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE------LLTDPSIL 192 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH------HHcCCCEE
Confidence 55555443321111111000 0001 11112211 23599999
Q ss_pred EecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhh-HHHHHHHHHHHHHhcCCCceecCCCChhHHHHH
Q 016139 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDWKAADIEIL 214 (394)
Q Consensus 136 ~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~-~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i 214 (394)
++| ||++++|..........+. + +.+-.+.+..+ -|+. .++-.+.|++ .+|.+|+.++.|+.. +.
T Consensus 193 flD---EPTSGLDS~sA~~vv~~Lk---~-lA~~grtVi~t-IHQPss~lf~lFD~l-~lLs~G~~vy~G~~~----~~- 258 (613)
T KOG0061|consen 193 FLD---EPTSGLDSFSALQVVQLLK---R-LARSGRTVICT-IHQPSSELFELFDKL-LLLSEGEVVYSGSPR----EL- 258 (613)
T ss_pred Eec---CCCCCcchhhHHHHHHHHH---H-HHhCCCEEEEE-EeCCcHHHHHHHhHh-hhhcCCcEEEecCHH----HH-
Confidence 999 9999999988644433322 2 22112322112 1654 4678899999 999999999999764 22
Q ss_pred HhhhhhcccCEeeecccchh
Q 016139 215 NTFQLLTAKPVVYLVNMNEK 234 (394)
Q Consensus 215 ~~~~~~~~kp~~~~~N~~~~ 234 (394)
..++....-|++--.|..|-
T Consensus 259 ~~ff~~~G~~~P~~~Npadf 278 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPADF 278 (613)
T ss_pred HHHHHhCCCCCCCcCChHHH
Confidence 23444455677766677653
No 377
>PLN03140 ABC transporter G family member; Provisional
Probab=99.11 E-value=7.5e-11 Score=135.07 Aligned_cols=176 Identities=14% Similarity=0.189 Sum_probs=106.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--hh--hhccCCC-ccccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS-AVPAF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~--~~~~~~~-~~~~~ 89 (394)
....+.+++|+.++|+||||||||||+++|+|... ..+.+|.|.++|.+... .. ..|.+|. .....
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC---------CCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 35567788999999999999999999999999821 11467999999875432 11 2466665 33344
Q ss_pred eEEEecccccccccCCCCC--------chhhhhHHHh---hhh----------------HHhhhhcc-CCCCeEEecCCC
Q 016139 90 LEIHDIAGLVRGAHEGQGL--------GNSFLSHIRA---VDG----------------IFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l--------~~~~l~~l~~---~d~----------------il~vv~a~-~~~~vl~ld~~~ 141 (394)
+++.|+..+.......... ....++.++. .|. -+.+++++ .+|+++++|
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD--- 1044 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD--- 1044 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe---
Confidence 5555554332100000000 0011111100 010 13344555 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH-HHHHHHHHHHHHhcC-CCceecCCCCh
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVRLGDWKA 208 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~~~~l~~ri~~~L~~-g~~~~~~~~~~ 208 (394)
||+++||......+...+..+. .-...+.. ++|+.. .+..+||++ .+|.+ |++++.|+..+
T Consensus 1045 EPTsgLD~~~a~~v~~~L~~l~----~~g~tVI~-t~Hq~~~~i~~~~D~v-llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1045 EPTSGLDARAAAIVMRTVRNTV----DTGRTVVC-TIHQPSIDIFEAFDEL-LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH----HCCCEEEE-EeCCCCHHHHHhCCEE-EEEcCCCEEEEECCccc
Confidence 9999999998755544433221 11122212 239887 567899999 78876 89988887653
No 378
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.11 E-value=6.9e-11 Score=112.74 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..-++.|.|+||+|||||++.||+..+++++|||||...+.|.+...+. .++++||||+.+.+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~-----------------R~QvIDTPGlLDRP 229 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL-----------------RIQVIDTPGLLDRP 229 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc-----------------eEEEecCCcccCCC
Confidence 3468899999999999999999999999999999999999999988753 48999999998765
Q ss_pred c
Q 016139 103 H 103 (394)
Q Consensus 103 ~ 103 (394)
-
T Consensus 230 l 230 (346)
T COG1084 230 L 230 (346)
T ss_pred h
Confidence 4
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.9e-11 Score=107.35 Aligned_cols=54 Identities=22% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~ 77 (394)
+.....|+.|++.+|.||||||||||.++|+|... .+++.|.|.++|+++..+.
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDILELS 74 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCcccccCC
Confidence 56778899999999999999999999999999843 6789999999999875443
No 380
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.10 E-value=5.6e-11 Score=113.64 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=102.7
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----------hcc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFK 81 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~ 81 (394)
.-......+.+|+++||||.+||||||+.++|+|+... | .-...+|.|.++|+++-.++. .+.
T Consensus 20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~----~--~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mI 93 (316)
T COG0444 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK----P--NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93 (316)
T ss_pred EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC----C--CCeEeeeEEEECCcccccCCHHHHHhhcCceEEEE
Confidence 33567778999999999999999999999999998320 0 011356899999986543332 112
Q ss_pred CCCc---cccce----EEEecccccccc-cCC--CCCchhhhhHHHhhhh--H---------------Hhhhhcc-CCCC
Q 016139 82 PKSA---VPAFL----EIHDIAGLVRGA-HEG--QGLGNSFLSHIRAVDG--I---------------FHVLRAF-EDPD 133 (394)
Q Consensus 82 ~~~~---~~~~i----~~~D~~gl~~~~-~~~--~~l~~~~l~~l~~~d~--i---------------l~vv~a~-~~~~ 133 (394)
+|.. ++..+ ++.++.-..... .+. .......++.++.-+. + +.++-|+ -+|+
T Consensus 94 fQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred EcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCC
Confidence 2221 11000 011111100000 000 0000001111110000 0 1222333 5899
Q ss_pred eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 134 vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+++.| ||++.||+..+.-++..+..+.+ +....+ .-.||++..+.++|||| .+|..|+++-.++.
T Consensus 174 LlIAD---EPTTALDvt~QaqIl~Ll~~l~~---e~~~ai-ilITHDl~vva~~aDri-~VMYaG~iVE~g~~ 238 (316)
T COG0444 174 LLIAD---EPTTALDVTVQAQILDLLKELQR---EKGTAL-ILITHDLGVVAEIADRV-AVMYAGRIVEEGPV 238 (316)
T ss_pred EEEeC---CCcchhhHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhcceE-EEEECcEEEEeCCH
Confidence 99999 99999999997666555443333 111111 11249999999999999 99999999877764
No 381
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=116.54 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=103.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+....++..|+.+|||||+|||||||.++|.|. ..|.+|.|+++|-+++.... .|.||..--
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~-----------w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVGI-----------WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHcc-----------cccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 445567789999999999999999999999999 78999999999988765432 578775211
Q ss_pred cceEEEeccc-ccccccCCCCCchhhhhHHHhhhh----------------------------HHhhhhcc-CCCCeEEe
Q 016139 88 AFLEIHDIAG-LVRGAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 88 ~~i~~~D~~g-l~~~~~~~~~l~~~~l~~l~~~d~----------------------------il~vv~a~-~~~~vl~l 137 (394)
+.=++-++.. +.+... ..+..+..+.+++ -+.+.||+ .+|.+++|
T Consensus 422 F~GTIaeNIaRf~~~~d-----~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 422 FDGTIAENIARFGEEAD-----PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred cCCcHHHHHHhccccCC-----HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 1111111111 000000 0111111111110 14577887 99999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
| ||-+.+|..-+.-...-+..++++ ..+..-.+|.. .+...+|+| -+|++|++...|+-+
T Consensus 497 D---EPNsNLD~~GE~AL~~Ai~~~k~r-----G~~vvviaHRP-s~L~~~Dki-lvl~~G~~~~FG~r~ 556 (580)
T COG4618 497 D---EPNSNLDSEGEAALAAAILAAKAR-----GGTVVVIAHRP-SALASVDKI-LVLQDGRIAAFGPRE 556 (580)
T ss_pred c---CCCCCcchhHHHHHHHHHHHHHHc-----CCEEEEEecCH-HHHhhccee-eeecCChHHhcCCHH
Confidence 9 999999998764433322222111 00001112655 456788999 899999988777643
No 382
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.09 E-value=5.6e-11 Score=121.39 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=105.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----------hccC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKP 82 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----------~~~~ 82 (394)
-+.....+.+|+++||||.+||||||+.++|.|+... . .....|.|.++|.++..+.. .+.+
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~------~-~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE------G-GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC------C-CcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 3667788999999999999999999999999999421 0 02358999999986543322 2333
Q ss_pred CCcc---ccceE--------------------------EEecccccccccC-----CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 83 KSAV---PAFLE--------------------------IHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 83 ~~~~---~~~i~--------------------------~~D~~gl~~~~~~-----~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
|+.+ +..++ +++..|+...... ..+-|++ ++ +.++.|
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r--QR-------v~iAmA 168 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR--QR-------VMIAMA 168 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH--HH-------HHHHHH
Confidence 3311 11111 1111122111000 0000111 11 223344
Q ss_pred c-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 129 F-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 129 ~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
+ .+|+++++| ||++.+|+..+..++..+..+.+.. ...+ .-.+|++..+.++|||+ .+|.+|+++-.|+.+
T Consensus 169 La~~P~LLIaD---EPTTaLDvt~q~qIL~llk~l~~e~---g~a~-l~ITHDl~Vva~~aDrv-~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 169 LALKPKLLIAD---EPTTALDVTTQAQILDLLKDLQREL---GMAV-LFITHDLGVVAELADRV-VVMYKGEIVETGPTE 240 (539)
T ss_pred HhCCCCEEEEC---CCccccCHHHHHHHHHHHHHHHHHc---CcEE-EEEcCCHHHHHHhcCeE-EEEECCEEEEecCHH
Confidence 4 599999999 9999999998766655544443221 1111 11249999999999999 999999998777543
No 383
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.08 E-value=4.4e-11 Score=137.98 Aligned_cols=167 Identities=14% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....|++|+++||+|++|||||||+++|+|. .+ .+|.|.++|.++..+.. .+.||....
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-----------~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~L 1303 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-----------LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI 1303 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCcc
Confidence 344567889999999999999999999999998 43 68999999988754331 477877544
Q ss_pred cceEEEecccccccccCC--------CCCchhhhhHH----------------HhhhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEG--------QGLGNSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~--------~~l~~~~l~~l----------------~~~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.++.......... -++. .+...+ ..---.+.++||+ .+++++++| |
T Consensus 1304 F~GTIR~NLdp~~~~tdeei~~aL~~~~L~-~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLD---E 1379 (1490)
T TIGR01271 1304 FSGTFRKNLDPYEQWSDEEIWKVAEEVGLK-SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLD---E 1379 (1490)
T ss_pred CccCHHHHhCcccCCCHHHHHHHHHHCCCH-HHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEe---C
Confidence 333444433211100000 0000 000000 0001125677877 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHH-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|...+..+...+. + ... .++ ...+|.+..+.. ||+| ..|++|+++..|+.
T Consensus 1380 aTS~lD~~Te~~I~~~L~---~---~~~~~Tv-I~IaHRl~ti~~-~DrI-lvL~~G~ivE~g~p 1435 (1490)
T TIGR01271 1380 PSAHLDPVTLQIIRKTLK---Q---SFSNCTV-ILSEHRVEALLE-CQQF-LVIEGSSVKQYDSI 1435 (1490)
T ss_pred CcccCCHHHHHHHHHHHH---H---HcCCCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEeCCH
Confidence 999999988655433321 1 111 111 122498877654 9999 88999999877653
No 384
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.07 E-value=9.4e-11 Score=116.05 Aligned_cols=91 Identities=31% Similarity=0.485 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.+.+++|+|.||||||||||+|++....++++||+|++|..+.+.+++. ..+.++||+|+....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccC
Confidence 3479999999999999999999998766689999999999999988542 248999999996432
Q ss_pred cCC-CCCchhhhhHHHhhhhHHhhhhcc
Q 016139 103 HEG-QGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~~-~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
... .......+..++.+|++++|+|+.
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~s 279 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDAS 279 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 211 000122344567888888887774
No 385
>COG2262 HflX GTPases [General function prediction only]
Probab=99.04 E-value=1.5e-10 Score=113.59 Aligned_cols=87 Identities=31% Similarity=0.516 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
..|+|+|.+|||||||||+||+..+...+..|+|++|+.-.+.+++. ..+.+.||.|++.....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCCh
Confidence 58999999999999999999999888899999999999999999852 35889999999976543
Q ss_pred CCCCchhh---hhHHHhhhhHHhhhhcc
Q 016139 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 105 ~~~l~~~~---l~~l~~~d~il~vv~a~ 129 (394)
.+...| ++....+|+++||+|++
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaS 282 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDAS 282 (411)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 344455 45667899999999986
No 386
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.6e-10 Score=98.45 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=42.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (394)
.....+..|+.+-|.||||+|||||+++|+|+ .+|.+|.|.+.+..+.
T Consensus 20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-----------l~p~~G~v~~~~~~i~ 67 (209)
T COG4133 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGL-----------LRPDAGEVYWQGEPIQ 67 (209)
T ss_pred ceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCeEEecCCCCc
Confidence 34456789999999999999999999999999 8899999999977653
No 387
>PLN03073 ABC transporter F family; Provisional
Probab=99.02 E-value=8.6e-11 Score=126.27 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=51.7
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
+.+++++ .+|+++++| ||++++|+...+.+. +.+..+...+... +|+...+..+|+++ .+|++|++.
T Consensus 353 v~LA~aL~~~p~lLlLD---EPt~~LD~~~~~~l~-------~~L~~~~~tviiv-sHd~~~l~~~~d~i-~~l~~g~i~ 420 (718)
T PLN03073 353 IALARALFIEPDLLLLD---EPTNHLDLHAVLWLE-------TYLLKWPKTFIVV-SHAREFLNTVVTDI-LHLHGQKLV 420 (718)
T ss_pred HHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHHH-------HHHHHcCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEE
Confidence 4556666 799999999 999999998853332 2232222222222 49999999999999 889999986
Q ss_pred -ecCCCC
Q 016139 202 -RLGDWK 207 (394)
Q Consensus 202 -~~~~~~ 207 (394)
+.|+++
T Consensus 421 ~~~g~~~ 427 (718)
T PLN03073 421 TYKGDYD 427 (718)
T ss_pred EeCCCHH
Confidence 556554
No 388
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.01 E-value=2.2e-10 Score=132.27 Aligned_cols=162 Identities=18% Similarity=0.242 Sum_probs=99.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
.....+++|+.++|+||||||||||+++|+|. ..|++|.|.++|. -.|.||.......++.|+
T Consensus 444 ~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-----------~~~~~G~i~~~g~------iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE-----------LEPSEGKIKHSGR------ISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE------EEEEeCCCccCCccHHHH
Confidence 44466789999999999999999999999999 6799999998872 234555422112244443
Q ss_pred ccccccccCCCCCchhhhh------HH-------------------HhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 96 AGLVRGAHEGQGLGNSFLS------HI-------------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~------~l-------------------~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
.-+...... . .....+. .+ ..-..-+.++||+ .+|+++++| ||++.+|.
T Consensus 507 I~~g~~~~~-~-~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD---ep~saLD~ 581 (1490)
T TIGR01271 507 IIFGLSYDE-Y-RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFTHLDV 581 (1490)
T ss_pred HHhccccch-H-HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCH
Confidence 332211000 0 0000000 00 0001125667777 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
.....+...+ +.+.. + .+.+ .-.+|++..+.. ||++ .+|++|+++..|+.
T Consensus 582 ~~~~~i~~~~--l~~~~-~-~~tv-ilvtH~~~~~~~-ad~i-i~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 582 VTEKEIFESC--LCKLM-S-NKTR-ILVTSKLEHLKK-ADKI-LLLHEGVCYFYGTF 631 (1490)
T ss_pred HHHHHHHHHH--HHHHh-c-CCeE-EEEeCChHHHHh-CCEE-EEEECCEEEEEcCH
Confidence 8865443321 11111 0 1111 112499887764 9999 88899998877654
No 389
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.01 E-value=2.2e-10 Score=131.67 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecC-Ccchhh-----hhh--hccCCCcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEW-----LCQ--LFKPKSAV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~-g~~~~~-----l~~--~~~~~~~~ 86 (394)
......+++|+++||+|+||||||||+++|+|. .+|++|.|.++ |.++.. +.. .|.||...
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~ 470 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-----------YDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPL 470 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-----------ccCCCCeEEEeCCcchhhCCHHHHHHhccEeccccc
Confidence 455677899999999999999999999999999 67999999994 555532 221 46677643
Q ss_pred ccceEEEeccc
Q 016139 87 PAFLEIHDIAG 97 (394)
Q Consensus 87 ~~~i~~~D~~g 97 (394)
....++.|+..
T Consensus 471 LF~~TI~eNI~ 481 (1466)
T PTZ00265 471 LFSNSIKNNIK 481 (1466)
T ss_pred chhccHHHHHH
Confidence 33335555443
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4e-10 Score=112.85 Aligned_cols=73 Identities=18% Similarity=0.408 Sum_probs=54.7
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
++++||+ .+||++.|| ||++.||+.+ +.+++..+..+..++ ...+|+...+..+|+.| .+++.-++-
T Consensus 207 laLARAlf~~pDlLLLD---EPTNhLDv~a-------v~WLe~yL~t~~~T~-liVSHDr~FLn~V~tdI-IH~~~~kL~ 274 (582)
T KOG0062|consen 207 LALARALFAKPDLLLLD---EPTNHLDVVA-------VAWLENYLQTWKITS-LIVSHDRNFLNTVCTDI-IHLENLKLD 274 (582)
T ss_pred HHHHHHHhcCCCEEeec---CCcccchhHH-------HHHHHHHHhhCCceE-EEEeccHHHHHHHHHHH-HHHhhhhhh
Confidence 4566665 799999999 9999999988 556777776665333 22249999999999999 777766653
Q ss_pred -ecCCCC
Q 016139 202 -RLGDWK 207 (394)
Q Consensus 202 -~~~~~~ 207 (394)
|.|+++
T Consensus 275 ~YkGN~~ 281 (582)
T KOG0062|consen 275 YYKGNYS 281 (582)
T ss_pred hhcCcHH
Confidence 447665
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.00 E-value=4e-10 Score=125.85 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....|++|++|||||++|||||||+++|.++ .+|..|.|.++|.++..+.. ...||+.+-
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-----------~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-----------VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-----------cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 556667889999999999999999999999999 78999999999998765442 356766433
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
+.=++..+..-....+. .+..+.+..+ .-++.++||+ .+..|+++|
T Consensus 1226 FsGTvR~NLDPf~e~sD-----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLD 1300 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSD-----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLD 1300 (1381)
T ss_pred ecCccccccCcccccCH-----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEe
Confidence 22222221111000000 0011111111 1235677777 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|.+..+|...+.++..-+ .+++..-.-....|.+..+.+ |||| -+|++|+++-.++.
T Consensus 1301 ---EATAsVD~~TD~lIQ~tI------R~~F~dcTVltIAHRl~TVmd-~DrV-lVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1301 ---EATASVDPETDALIQKTI------REEFKDCTVLTIAHRLNTVMD-SDRV-LVLDAGRVVEFDSP 1357 (1381)
T ss_pred ---cccccCChHHHHHHHHHH------HHHhcCCeEEEEeeccchhhh-cCeE-EEeeCCeEeecCCh
Confidence 888888888765543221 122221111122387777654 8999 89999999866543
No 392
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.00 E-value=4.3e-10 Score=109.82 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=100.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-hccCCCccccceEEEe
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-LFKPKSAVPAFLEIHD 94 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-~~~~~~~~~~~i~~~D 94 (394)
....+++.|+.+||||.+|||||||=.+|+++ +. ..|.|.+.|++++.+.. ...|-+. .-++.|-|
T Consensus 305 ~isl~L~~gqTlGlVGESGSGKsTlG~allrL-----------~~-s~G~I~F~G~~i~~~~~~~mrplR~-~mQvVFQD 371 (534)
T COG4172 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRL-----------IP-SQGEIRFDGQDIDGLSRKEMRPLRR-RMQVVFQD 371 (534)
T ss_pred cceeEecCCCeEEEEecCCCCcchHHHHHHhh-----------cC-cCceEEECCccccccChhhhhhhhh-hceEEEeC
Confidence 34556788999999999999999999999998 44 45999999998865543 1222110 01122222
Q ss_pred ccccccc-------------ccC-CCC---CchhhhhHHHhhhh------------------HHhhhhcc-CCCCeEEec
Q 016139 95 IAGLVRG-------------AHE-GQG---LGNSFLSHIRAVDG------------------IFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 95 ~~gl~~~-------------~~~-~~~---l~~~~l~~l~~~d~------------------il~vv~a~-~~~~vl~ld 138 (394)
--|.... -+. ... ...+....++.+-+ -+.++||+ -+|.++++|
T Consensus 372 PygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LD 451 (534)
T COG4172 372 PYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451 (534)
T ss_pred CCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEec
Confidence 1111000 000 000 00000111111000 04455555 589999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|.--+.-++..+..+++..+- ..... +|++..+..+|+++ .+|.+|+++-.|+.+
T Consensus 452 ---EPTSALD~SVQaQvv~LLr~LQ~k~~L--sYLFI--SHDL~VvrAl~~~v-iVm~~GkiVE~G~~~ 512 (534)
T COG4172 452 ---EPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFI--SHDLAVVRALCHRV-IVMRDGKIVEQGPTE 512 (534)
T ss_pred ---CCchHhhHHHHHHHHHHHHHHHHHhCC--eEEEE--eccHHHHHHhhceE-EEEeCCEEeeeCCHH
Confidence 999999886653333333333222110 11112 39999999999999 999999999887643
No 393
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.00 E-value=1.4e-10 Score=134.29 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=99.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
+.....+++|+.++|+|+||||||||+++|+|. ..|++|.|.++|. -.|.||.......++.|
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-----------~~~~~G~i~~~g~------i~yv~Q~~~l~~~Ti~e 717 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVHMKGS------VAYVPQQAWIQNDSLRE 717 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CccCCcEEEECCE------EEEEcCCccccCCcHHH
Confidence 344567889999999999999999999999999 6799999998872 23445542222233333
Q ss_pred cccccccccCCCCCchhhh------hHHH-------------------hhhhHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 95 IAGLVRGAHEGQGLGNSFL------SHIR-------------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l------~~l~-------------------~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
+..+...... ....+.+ ..++ .-..-+.++||+ .+|+++++| ||++.+|
T Consensus 718 NI~~g~~~~~--~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD---Ep~saLD 792 (1522)
T TIGR00957 718 NILFGKALNE--KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVD 792 (1522)
T ss_pred HhhcCCccCH--HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CCccccC
Confidence 3332211000 0000000 0000 001124567777 799999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
......+...+........ .+.+ .-.+|+...+.. ||++ ..|++|++...|+.+
T Consensus 793 ~~~~~~i~~~l~~~~~~~~--~~tv-IlvTH~~~~l~~-~D~i-i~l~~G~i~~~g~~~ 846 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLK--NKTR-ILVTHGISYLPQ-VDVI-IVMSGGKISEMGSYQ 846 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhc--CCEE-EEEeCChhhhhh-CCEE-EEecCCeEEeeCCHH
Confidence 9886544333211100000 0111 112488887765 8998 888999988777543
No 394
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=5.3e-10 Score=122.55 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=109.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----h--hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~--~~~~~~~~~ 87 (394)
.....+++.|+.+|||||.||||||.+.+|.+. .+|+.|.|.++|.++..+. . ....|+.+-
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-----------Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L 1075 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERF-----------YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL 1075 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCcccccCCHHHHHHhcceeccCchh
Confidence 456778899999999999999999999999999 6899999999998765433 2 355666655
Q ss_pred cceEEEecccccc-cccCCCCCchhhhhHHHhhhh----------------------------HHhhhhcc-CCCCeEEe
Q 016139 88 AFLEIHDIAGLVR-GAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 88 ~~i~~~D~~gl~~-~~~~~~~l~~~~l~~l~~~d~----------------------------il~vv~a~-~~~~vl~l 137 (394)
+.-++.|+..++. ..+. .+..+.++.+++ -+.++||+ .+|.+++|
T Consensus 1076 F~~TIrENI~YG~~~vs~-----~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLL 1150 (1228)
T KOG0055|consen 1076 FNGTIRENIAYGSEEVSE-----EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLL 1150 (1228)
T ss_pred hcccHHHHHhccCCCCCH-----HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeee
Confidence 5566666655541 1110 011111111111 14566666 79999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~-~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
| |.++.||...+... ++-+++...-. -.-.+|.+..+ +-||.| .++++|+++-.|+-
T Consensus 1151 D---EATSALDseSErvV-------QeALd~a~~gRT~IvIAHRLSTI-qnaD~I-~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1151 D---EATSALDSESERVV-------QEALDRAMEGRTTIVIAHRLSTI-QNADVI-AVLKNGKVVEQGTH 1208 (1228)
T ss_pred e---ccchhhhhhhHHHH-------HHHHHHhhcCCcEEEEecchhhh-hcCCEE-EEEECCEEEecccH
Confidence 9 99999999886443 33333322110 00112888765 457888 89999999888763
No 395
>PRK11058 GTPase HflX; Provisional
Probab=98.98 E-value=2.8e-10 Score=115.28 Aligned_cols=87 Identities=31% Similarity=0.496 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
-.++|+|.||||||||||+|++....+++.||+|++|..+.+.+++. ..+.++||+|+......
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCCH
Confidence 37999999999999999999998877789999999999999888752 24789999999643211
Q ss_pred CCCCchhh---hhHHHhhhhHHhhhhcc
Q 016139 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 105 ~~~l~~~~---l~~l~~~d~il~vv~a~ 129 (394)
.+...| +..++.+|++++|+|++
T Consensus 262 --~lve~f~~tl~~~~~ADlIL~VvDaS 287 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVVDAA 287 (426)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEEeCC
Confidence 111222 34456777777777664
No 396
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.5e-10 Score=111.31 Aligned_cols=92 Identities=34% Similarity=0.455 Sum_probs=74.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.++.|..++|+|+||+|||||+|+|+.....+ ++.|+||++.....+.++|. .+.+.||+|+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~-----------------~v~L~DTAGi 326 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV-----------------PVRLSDTAGI 326 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe-----------------EEEEEecccc
Confidence 45678999999999999999999999998877 99999999999999999985 3899999999
Q ss_pred cccccC-CCCCc-hhhhhHHHhhhhHHhhhhc
Q 016139 99 VRGAHE-GQGLG-NSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 99 ~~~~~~-~~~l~-~~~l~~l~~~d~il~vv~a 128 (394)
.+.... -+.++ ++....++.+|+++.|+++
T Consensus 327 Re~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 327 REESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred ccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 872222 12222 3445677888888887776
No 397
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.94 E-value=9.1e-10 Score=80.73 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=50.2
Q ss_pred EEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEE
Q 016139 305 IYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFF 384 (394)
Q Consensus 305 i~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~ 384 (394)
|.+|| .....+. +++|+|+.|+|..||+++++.|+.|.|++ ++++.+|.++|||+|+|
T Consensus 1 I~v~l-pdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYL-PDGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEEE-TTSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEE
T ss_pred CEEEC-CCCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEE
Confidence 56777 3234444 99999999999999999999999999885 88999999999999998
Q ss_pred E
Q 016139 385 K 385 (394)
Q Consensus 385 ~ 385 (394)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 5
No 398
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=1.8e-09 Score=95.06 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=96.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh----------------
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------------- 78 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~---------------- 78 (394)
+....+-+.|..|.|||.+||||||++++|.-+ -.|+.|.|.++|+.+.....
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L-----------E~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhh-----------cCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 455666788999999999999999999999988 56999999999876521100
Q ss_pred ----hccCCC-ccccceEEEec----ccccccccCCC--CCchhhhhHHHhhhh--------------HHhhhhcc-CCC
Q 016139 79 ----LFKPKS-AVPAFLEIHDI----AGLVRGAHEGQ--GLGNSFLSHIRAVDG--------------IFHVLRAF-EDP 132 (394)
Q Consensus 79 ----~~~~~~-~~~~~i~~~D~----~gl~~~~~~~~--~l~~~~l~~l~~~d~--------------il~vv~a~-~~~ 132 (394)
....|. .....++++++ |--.-+.++.+ .....+++.+..++- -+.++||+ -.|
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 011111 11222222221 11111111100 001112222211111 13566776 689
Q ss_pred CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 133 ~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++...| ||++.+|+.---..+..+.. +.+-.++... .+|.|.....+..++ .+|++|.+-..|+
T Consensus 172 ~vmLFD---EPTSALDPElVgEVLkv~~~----LAeEgrTMv~-VTHEM~FAR~Vss~v-~fLh~G~iEE~G~ 235 (256)
T COG4598 172 EVMLFD---EPTSALDPELVGEVLKVMQD----LAEEGRTMVV-VTHEMGFARDVSSHV-IFLHQGKIEEEGP 235 (256)
T ss_pred ceEeec---CCcccCCHHHHHHHHHHHHH----HHHhCCeEEE-EeeehhHHHhhhhhe-EEeecceecccCC
Confidence 999999 99999988553222222111 1111111111 239999999999999 8898887654443
No 399
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.90 E-value=1.5e-09 Score=116.20 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......+++|++++|+||||||||||+++|+|. .+|+.|.+.+++.. .-.|.||+.....-++.|
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-----------~~~~~G~i~~~~~~----~i~~v~Q~~~l~~~tv~e 533 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-----------WPVYGGRLTKPAKG----KLFYVPQRPYMTLGTLRD 533 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEeecCCC----cEEEECCCCCCCCcCHHH
Confidence 344567789999999999999999999999998 55778888776421 123444442111113333
Q ss_pred ccccccc------ccCCCCCchhhhhHHHh-----------------------hhhHHhhhhcc-CCCCeEEecCCCCCc
Q 016139 95 IAGLVRG------AHEGQGLGNSFLSHIRA-----------------------VDGIFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 95 ~~gl~~~------~~~~~~l~~~~l~~l~~-----------------------~d~il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
...+... ...........++.++. --.-+.+++++ .+|+++++| ||+
T Consensus 534 ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD---Ept 610 (659)
T TIGR00954 534 QIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD---ECT 610 (659)
T ss_pred HHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 3222110 00000000000000000 00114566776 799999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhc
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 196 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~ 196 (394)
+++|...++.+... +.+....+ ...+|+...+ ..||++ ..|+
T Consensus 611 s~LD~~~~~~l~~~-------l~~~~~tv-I~isH~~~~~-~~~d~i-l~l~ 652 (659)
T TIGR00954 611 SAVSVDVEGYMYRL-------CREFGITL-FSVSHRKSLW-KYHEYL-LYMD 652 (659)
T ss_pred cCCCHHHHHHHHHH-------HHHcCCEE-EEEeCchHHH-HhCCEE-EEEe
Confidence 99999886443322 21112222 1223888765 568877 4443
No 400
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.90 E-value=3e-09 Score=100.51 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=70.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+|+||+||+|||||.|.+.|..+.+ +..+.||+.-..|.++-+. .++.|+|+||+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccccc
Confidence 3589999999999999999999998855 8999999999999988764 579999999998543
Q ss_pred cC-CCC----CchhhhhHHHhhhhHHhhhhcc
Q 016139 103 HE-GQG----LGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~-~~~----l~~~~l~~l~~~d~il~vv~a~ 129 (394)
.. ... +.......+..+|.++.++|++
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das 166 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDAS 166 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEecc
Confidence 32 111 2223345678899998888887
No 401
>PTZ00243 ABC transporter; Provisional
Probab=98.90 E-value=9.3e-10 Score=127.38 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=97.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
.....+++|+.++|+|+||||||||+++|+|. ..|++|.|.+.+ . -.|.||.......++.|+
T Consensus 678 ~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~-----------~~~~~G~i~~~~-~-----i~yv~Q~~~l~~~Tv~en 740 (1560)
T PTZ00243 678 DVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ-----------FEISEGRVWAER-S-----IAYVPQQAWIMNATVRGN 740 (1560)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC-e-----EEEEeCCCccCCCcHHHH
Confidence 33567889999999999999999999999999 678999987643 1 234455422222344444
Q ss_pred ccccccccCCCCCchhh---------hhHH----------------HhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 96 AGLVRGAHEGQGLGNSF---------LSHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 96 ~gl~~~~~~~~~l~~~~---------l~~l----------------~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
..+...... .. ..+. ++.+ ..--.-+.++||+ .+|+++++| ||++.+|.
T Consensus 741 I~~~~~~~~-~~-~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD---EP~saLD~ 815 (1560)
T PTZ00243 741 ILFFDEEDA-AR-LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD---DPLSALDA 815 (1560)
T ss_pred HHcCChhhH-HH-HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCCH
Confidence 333211000 00 0000 0000 0001115677777 899999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
...+.+...+ +...+. .+.+ .-.+|+...+ ..||++ .+|++|++...|+..
T Consensus 816 ~~~~~i~~~~--~~~~~~--~~Tv-IlvTH~~~~~-~~ad~i-i~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 816 HVGERVVEEC--FLGALA--GKTR-VLATHQVHVV-PRADYV-VALGDGRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHH--HHHhhC--CCEE-EEEeCCHHHH-HhCCEE-EEEECCEEEEecCHH
Confidence 7653332211 001110 1111 1124888877 469999 889999988777643
No 402
>PLN03130 ABC transporter C family member; Provisional
Probab=98.87 E-value=1e-09 Score=127.26 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=96.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCce-eEEecCCcchhhhhhhccCCCccccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~-G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
+.....+++|+.++|+||+|||||||+++|+|. .+|.+ |.|.+.+. -.|.||...-.+-++.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~GG~I~l~~~------Iayv~Q~p~LfngTIr 696 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE-----------LPPRSDASVVIRGT------VAYVPQVSWIFNATVR 696 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------hccCCCceEEEcCe------EEEEcCccccCCCCHH
Confidence 445577889999999999999999999999999 67888 89886542 2344544322223333
Q ss_pred ecccccccccCCCCCchhhhhHH-------------------------HhhhhHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 94 DIAGLVRGAHEGQGLGNSFLSHI-------------------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l-------------------------~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
|+.-++..... ..-.+.++.+ +.-..-+.++||+ .+++++++| ||++.+
T Consensus 697 eNI~fg~~~d~--e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLD---EptSAL 771 (1622)
T PLN03130 697 DNILFGSPFDP--ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD---DPLSAL 771 (1622)
T ss_pred HHHhCCCcccH--HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEC---CCcccc
Confidence 33333211100 0000000000 0000114567776 799999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-H-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDV-E-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~-~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|......+.. +.+... . +++ .-.+|.... ...+|+| ..|++|++...|+..
T Consensus 772 D~~~~~~I~~------~~l~~~l~~kTv-IlVTH~l~~-l~~aD~I-i~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 772 DAHVGRQVFD------KCIKDELRGKTR-VLVTNQLHF-LSQVDRI-ILVHEGMIKEEGTYE 824 (1622)
T ss_pred CHHHHHHHHH------HHhhHHhcCCEE-EEEECCHhH-HHhCCEE-EEEeCCEEEEeCCHH
Confidence 9977533211 111111 1 111 112488865 4568988 888999998777654
No 403
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.83 E-value=2.7e-09 Score=97.31 Aligned_cols=61 Identities=38% Similarity=0.640 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+|+|+|++|||||||+|.+++......+.+++|..+..+.+.+++. ..+.++|+||+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~~~ 102 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRD 102 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccccC
Confidence 69999999999999999999998766678889999998888877652 25899999998643
No 404
>PLN03232 ABC transporter C family member; Provisional
Probab=98.82 E-value=2e-09 Score=124.50 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEE-ecCCcchhhhhhhccCCCccccceEEE
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-NIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i-~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
+....++++|+.++|+|++|||||||+++|+|. .+|++|.+ .+.+ . -.|.||...-.+-++.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~G~i~~~~~-~-----Iayv~Q~p~Lf~gTIr 696 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE-----------LSHAETSSVVIRG-S-----VAYVPQVSWIFNATVR 696 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CcccCCCEEEecC-c-----EEEEcCccccccccHH
Confidence 445577889999999999999999999999999 56777643 2222 1 1344444222222333
Q ss_pred ecccccccccCCCCCchhhhhHH-------------------------HhhhhHHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 94 DIAGLVRGAHEGQGLGNSFLSHI-------------------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 94 D~~gl~~~~~~~~~l~~~~l~~l-------------------------~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
|+.-+...... ..-.+.++.+ +.-..-+.++||+ .+|+++++| ||++.+
T Consensus 697 eNI~fg~~~~~--e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLD---EptSaL 771 (1495)
T PLN03232 697 ENILFGSDFES--ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFD---DPLSAL 771 (1495)
T ss_pred HHhhcCCccCH--HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEc---CCcccc
Confidence 33332211000 0000000000 0001114567776 799999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-H-HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 148 EVISAELRLKDIEFMERRIEDV-E-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~-~-~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
|...+..+... .+... . +++ .-.+|....+ ..+|+| ..|++|++...|+.+
T Consensus 772 D~~t~~~I~~~------~l~~~l~~kT~-IlvTH~~~~l-~~aD~I-i~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 772 DAHVAHQVFDS------CMKDELKGKTR-VLVTNQLHFL-PLMDRI-ILVSEGMIKEEGTFA 824 (1495)
T ss_pred CHHHHHHHHHH------HhhhhhcCCEE-EEEECChhhH-HhCCEE-EEEeCCEEEEecCHH
Confidence 99876433221 11111 1 111 1123887654 568988 888999998777643
No 405
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.82 E-value=1.2e-08 Score=110.32 Aligned_cols=88 Identities=28% Similarity=0.386 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|.||||||||||+|+|....++|+|++|.++..|.+..++. .+.++|+||.......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~-----------------~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSLTTI 66 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCce-----------------EEEEEECCCccccccc
Confidence 47999999999999999999999888899999999999999877653 4899999998754321
Q ss_pred C--CCCchhhhh-H--HHhhhhHHhhhhcc
Q 016139 105 G--QGLGNSFLS-H--IRAVDGIFHVLRAF 129 (394)
Q Consensus 105 ~--~~l~~~~l~-~--l~~~d~il~vv~a~ 129 (394)
. .....+... . .+.+|+++.|+|+.
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat 96 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDAS 96 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence 1 111222111 1 13578888888875
No 406
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.81 E-value=3.6e-09 Score=91.12 Aligned_cols=61 Identities=31% Similarity=0.389 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
|.+++++|++|||||||++.+++.... ..+.|.+|..+..+.+.+.+. .+.++|+||+...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~ 62 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGI-----------------PVRLIDTAGIRET 62 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCE-----------------EEEEEECCCcCCC
Confidence 578999999999999999999988653 478888888887777766542 4789999998654
No 407
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.80 E-value=3.3e-09 Score=108.08 Aligned_cols=93 Identities=29% Similarity=0.385 Sum_probs=69.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.++.+.+++|+|+||||||||+|.|++.... ++++|++|.++..+.+.++|. .+.++||||+
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~-----------------~v~l~DTaG~ 261 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI-----------------LIKLLDTAGI 261 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE-----------------EEEEeeCCCc
Confidence 4567889999999999999999999997653 489999999998899988773 3789999998
Q ss_pred cccccCCCCCc-hhhhhHHHhhhhHHhhhhcc
Q 016139 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 99 ~~~~~~~~~l~-~~~l~~l~~~d~il~vv~a~ 129 (394)
.......+..+ ......++.+|++++|+|+.
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 64321111111 12235567788888877764
No 408
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.77 E-value=6.1e-09 Score=106.55 Aligned_cols=93 Identities=29% Similarity=0.325 Sum_probs=70.0
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
+++.+.+++|+|++|||||||+|.|++.... ++++|++|.++....+.++|. .+.++||||+
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~i~l~DT~G~ 273 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI-----------------PLRLIDTAGI 273 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe-----------------EEEEEeCCCC
Confidence 3456789999999999999999999998764 589999999999888888763 3799999998
Q ss_pred cccccCCCCCc-hhhhhHHHhhhhHHhhhhcc
Q 016139 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 99 ~~~~~~~~~l~-~~~l~~l~~~d~il~vv~a~ 129 (394)
......-+..+ .+.+..++.+|++++|+|+.
T Consensus 274 ~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 274 RETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 64211100111 12345678889888888875
No 409
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.76 E-value=1.8e-08 Score=87.38 Aligned_cols=168 Identities=18% Similarity=0.315 Sum_probs=98.1
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-----------hhh---hccCC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----------LCQ---LFKPK 83 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----------l~~---~~~~~ 83 (394)
....+.|+.+.++||+|||||||++.|.-+. -|.+|...+.+..++. +.. +...|
T Consensus 22 ~l~~~~getlvllgpsgagkssllr~lnlle-----------~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-----------MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred eecCCCCCEEEEECCCCCchHHHHHHHHHHh-----------CCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 3456789999999999999999999998773 4888888777654432 111 11112
Q ss_pred CccccceEEEec----ccccccccCCCC--CchhhhhHHHhhhhH--------------Hhhhhcc-CCCCeEEecCCCC
Q 016139 84 SAVPAFLEIHDI----AGLVRGAHEGQG--LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~~~~~~i~~~D~----~gl~~~~~~~~~--l~~~~l~~l~~~d~i--------------l~vv~a~-~~~~vl~ld~~~e 142 (394)
-.....++++++ |--..+.++... ...+.+.+++.++.. +.+.||+ -.|+++..| |
T Consensus 91 y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfd---e 167 (242)
T COG4161 91 YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFD---E 167 (242)
T ss_pred hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeec---C
Confidence 233333433332 211112221111 112234444433322 5567777 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+..+|+.-..-+...+ +.+..-...- .-.+|..+....+..++ .+|++|+++..|+
T Consensus 168 ptaaldpeitaqvv~ii----kel~~tgitq-vivthev~va~k~as~v-vyme~g~ive~g~ 224 (242)
T COG4161 168 PTAALDPEITAQIVSII----KELAETGITQ-VIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred cccccCHHHHHHHHHHH----HHHHhcCceE-EEEEeehhHHHhhhhhe-EeeecCeeEeecc
Confidence 99988885432222221 1121110000 01138888888999999 9999999987764
No 410
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.76 E-value=2.6e-08 Score=87.22 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|||||||++.+++........|..+.+.....+.+++.. ..+.++|++|..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKT---------------IKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCChH
Confidence 478999999999999999999876555555655555555556655532 247899999863
No 411
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.76 E-value=7.2e-09 Score=103.25 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
...++||||.||+|||||+|+|+|....+ ++.|+||+++..-.+.++|+. +.++||+|+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~-----------------~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK-----------------YVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE-----------------EEEEECCCCCcc
Confidence 45799999999999999999999998866 999999999999999998854 799999999865
Q ss_pred ccCCCCC----chhhhhHHHhhhhHHhhhhcc
Q 016139 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 102 ~~~~~~l----~~~~l~~l~~~d~il~vv~a~ 129 (394)
..-.++. ..+.+..+..+|.++.|+||.
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~ 271 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDAT 271 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECC
Confidence 5432221 123456667777777777764
No 412
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.2e-08 Score=100.00 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=82.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~~ 88 (394)
.....+.+|..+++|||+|+||||+++.|.+. .+.++|.|+++|+++....+ +..||..+-.
T Consensus 556 disF~v~pGktvAlVG~SGaGKSTimRlLfRf-----------fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLF 624 (790)
T KOG0056|consen 556 DISFTVQPGKTVALVGPSGAGKSTIMRLLFRF-----------FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLF 624 (790)
T ss_pred cceEEecCCcEEEEECCCCCchhHHHHHHHHH-----------hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceee
Confidence 34445679999999999999999999999998 67899999999998865332 5788887665
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhhhhH-------------------------Hhhhhcc-CCCCeEEecCCCC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI-------------------------FHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~i-------------------------l~vv~a~-~~~~vl~ld~~~e 142 (394)
+-++.++.-+.+.....+..-.. ......-|.| +.++|+. .+|.++++| |
T Consensus 625 NdTI~yNIryak~~AsneevyaA-AkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLD---E 700 (790)
T KOG0056|consen 625 NDTILYNIRYAKPSASNEEVYAA-AKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLD---E 700 (790)
T ss_pred cceeeeheeecCCCCChHHHHHH-HHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEc---c
Confidence 56666665554322111110000 0000001111 4566665 789999999 8
Q ss_pred CcchHHHHHH
Q 016139 143 PVRDLEVISA 152 (394)
Q Consensus 143 P~~~ld~i~~ 152 (394)
.++.+|.-++
T Consensus 701 ATSALDT~tE 710 (790)
T KOG0056|consen 701 ATSALDTNTE 710 (790)
T ss_pred hhhhcCCccH
Confidence 8888888775
No 413
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.73 E-value=6.9e-09 Score=104.70 Aligned_cols=72 Identities=18% Similarity=0.431 Sum_probs=52.7
Q ss_pred hhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHH-hhhcccchhhHHHHHHHHHHHHHhcCCCc-
Q 016139 124 HVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK-SMKRSNDKQLKIEHELCQRVKAWLQDGKD- 200 (394)
Q Consensus 124 ~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~-~~~~~~~h~~~~~~~l~~ri~~~L~~g~~- 200 (394)
.+.+++ .+|+++.|| ||+++||+-. +.+++..+.++.. .+-... |..+.+..+|..| ..|..++.
T Consensus 231 aLAr~Lf~kP~LLLLD---EPtnhLDleA-------~~wLee~L~k~d~~~lVi~s-h~QDfln~vCT~I-i~l~~kkl~ 298 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLD---EPTNHLDLEA-------IVWLEEYLAKYDRIILVIVS-HSQDFLNGVCTNI-IHLDNKKLI 298 (614)
T ss_pred HHHHHHhcCCCEEEec---CCccCCCHHH-------HHHHHHHHHhccCceEEEEe-cchhhhhhHhhhh-heeccccee
Confidence 344554 799999999 9999999876 3446666666655 232333 9999999999999 77877774
Q ss_pred eecCCCC
Q 016139 201 VRLGDWK 207 (394)
Q Consensus 201 ~~~~~~~ 207 (394)
.|.|+++
T Consensus 299 ~y~Gnyd 305 (614)
T KOG0927|consen 299 YYEGNYD 305 (614)
T ss_pred eecCCHH
Confidence 4567765
No 414
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=4.2e-08 Score=86.08 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=39.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (394)
......+.+|+..||+|.+|||||||+++|++. +.|++|.+.+..
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-----------l~p~~G~v~Y~~ 67 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-----------LTPDAGTVTYRM 67 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhcc-----------cCCCCCeEEEEc
Confidence 445667889999999999999999999999998 779999998754
No 415
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.72 E-value=2.2e-08 Score=87.76 Aligned_cols=58 Identities=31% Similarity=0.438 Sum_probs=49.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
+++++|++|||||||+|.|++.....+++|++|..+..+.+.+.+ ..+.++|+||...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCC
Confidence 589999999999999999999877677889999988888876654 2489999999854
No 416
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.71 E-value=3.2e-08 Score=86.56 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=87.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc--chhhhh-------------hh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE--RFEWLC-------------QL 79 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~--~~~~l~-------------~~ 79 (394)
......++.|+++.+=||+|+|||||+++|-+. ..|++|.|.+... -++... ..
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaN-----------Y~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiG 96 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN-----------YLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIG 96 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhc-----------cCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhH
Confidence 345567889999999999999999999999988 4699999987532 111110 13
Q ss_pred ccCCC-ccccceEEEecc---cccccccCC--CCCchhhhhHHHhhhhH---------------Hhhhhcc-CCCCeEEe
Q 016139 80 FKPKS-AVPAFLEIHDIA---GLVRGAHEG--QGLGNSFLSHIRAVDGI---------------FHVLRAF-EDPDIIHV 137 (394)
Q Consensus 80 ~~~~~-~~~~~i~~~D~~---gl~~~~~~~--~~l~~~~l~~l~~~d~i---------------l~vv~a~-~~~~vl~l 137 (394)
|.+|- ++-..+.-+|.. -+..+.... ......++.+++...-+ +.+.|+| -|-.++.|
T Consensus 97 yVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLL 176 (235)
T COG4778 97 YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLL 176 (235)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEe
Confidence 43332 111223333322 222211110 00111122222222222 5567777 67778999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhccc-----chhhHHHHHHHHHH
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRV 191 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~-----~h~~~~~~~l~~ri 191 (394)
| ||+..+|.-+.......+. .....+. =|+.+.-+.+|||+
T Consensus 177 D---EPTasLDa~Nr~vVveli~----------e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 177 D---EPTASLDATNRAVVVELIR----------EAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred c---CCcccccccchHHHHHHHH----------HHHhcCceEEEeeccHHHHHHHhhhe
Confidence 9 9999999988644433221 1111222 18888788889987
No 417
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.71 E-value=1.2e-08 Score=92.65 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=48.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~--~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.++|+|.+|||||||+|+|+|.....+. .+.+|..++.+...+.|. .+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR-----------------RVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe-----------------EEEEEECcCCCCcc
Confidence 5899999999999999999998764433 567788888887777663 48999999998643
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.71 E-value=1.5e-08 Score=102.38 Aligned_cols=163 Identities=15% Similarity=0.255 Sum_probs=86.4
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC-cchhhhhh--------------hccCC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQ--------------LFKPK 83 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g-~~~~~l~~--------------~~~~~ 83 (394)
.-+..+.++++|||||+|||||+++++|. +.|+.|.+.-.- ..+.++.+ .+.|.
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gd-----------l~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGD-----------LQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPK 479 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhc-----------cccccccccccccccchhhhhhhHhhcCcchhHHHHHHHh
Confidence 45777899999999999999999999999 789999885331 11211111 00000
Q ss_pred CccccceEEEeccccc-ccccCCCCCchhhhhHHH--hhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHH
Q 016139 84 SAVPAFLEIHDIAGLV-RGAHEGQGLGNSFLSHIR--AVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (394)
Q Consensus 84 ~~~~~~i~~~D~~gl~-~~~~~~~~l~~~~l~~l~--~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~ 160 (394)
-. ..-..-+.-++. +..-.+...... .+.+. .-..++++.-+...|.+++|| ||++++|+-.. .
T Consensus 480 ~~--~~~~~e~~r~ilgrfgLtgd~q~~p-~~~LS~Gqr~rVlFa~l~~kqP~lLlLD---EPtnhLDi~ti-------d 546 (614)
T KOG0927|consen 480 FP--DEKELEEMRSILGRFGLTGDAQVVP-MSQLSDGQRRRVLFARLAVKQPHLLLLD---EPTNHLDIETI-------D 546 (614)
T ss_pred cc--ccchHHHHHHHHHHhCCCccccccc-hhhcccccchhHHHHHHHhcCCcEEEec---CCCcCCCchhH-------H
Confidence 00 000000000000 000000000000 01110 011223433445899999999 99999988762 2
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
.+.+.++.+...+.. .+|+...+..+.++++..-+.....++|++
T Consensus 547 ~laeaiNe~~Ggvv~-vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 547 ALAEAINEFPGGVVL-VSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHhccCCceee-eechhhHHHHHHHHhHhhccCceeecCccH
Confidence 344555544332211 239999999999999555444444455654
No 419
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.70 E-value=8.7e-09 Score=104.80 Aligned_cols=87 Identities=26% Similarity=0.291 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
+++|+|.||+|||||+|.|++.... ++++|++|++...+.+.+.|. .+.++||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR-----------------EFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe-----------------EEEEEECCCCCCcchh
Confidence 4799999999999999999998754 389999999999999888774 3899999998532211
Q ss_pred -CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 105 -GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 105 -~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
...+..+....++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 0112223445677888888888774
No 420
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=1.7e-08 Score=113.01 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEE
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~ 92 (394)
.-+.....+++|+.+||+|+.|||||||+.+|+|. .+..+|.+.++|. -.|.||..--.+-++
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-----------m~~~sG~v~v~gs------iaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-----------MPKLSGSVAVNGS------VAYVPQQPWIQNGTV 598 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-----------cccccceEEEcCe------EEEeccccHhhCCcH
Confidence 33556677899999999999999999999999999 7899999999884 345555422222333
Q ss_pred EecccccccccCC-----------------------CCCchhhhhHHHhhhhHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 93 HDIAGLVRGAHEG-----------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 93 ~D~~gl~~~~~~~-----------------------~~l~~~~l~~l~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.|+.-++....+. ...|++=...-+.-.+-+.++||. ++.|+.++| ||++.+|
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD---DplSAVD 675 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD---DPLSAVD 675 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc---Ccchhhh
Confidence 3433332211100 000100000001111124667776 899999999 9999888
Q ss_pred HHHHHHHHhHHHHHHHHHHH-HHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 149 VISAELRLKDIEFMERRIED-VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~-~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
..... +. .++.+.. ++.+...-.||+... ..-+|.| .+|++|++...|+++
T Consensus 676 ahvg~---~i---f~~ci~~~L~~KT~ILVTHql~~-L~~ad~I-ivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 676 AHVGK---HI---FEECIRGLLRGKTVILVTHQLQF-LPHADQI-IVLKDGKIVESGTYE 727 (1381)
T ss_pred HhhhH---HH---HHHHHHhhhcCCEEEEEeCchhh-hhhCCEE-EEecCCeEecccCHH
Confidence 86531 11 2222211 111111112485543 3457878 889999999999876
No 421
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.68 E-value=8.6e-08 Score=87.53 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCcccccCCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc
Q 016139 15 RPILGRFSSHL-KIGIVGLPNVGKSTLFNTLT--------KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~-~vgliG~nGaGKSTLln~Lt--------g~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~ 85 (394)
.+....+..|+ +++|.||||+|||||+++|. |..+ |....+.+.-
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~v-----------p~~~~~~~~~--------------- 71 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPI-----------PAAEGSSLPV--------------- 71 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCc-----------cccccccCcC---------------
Confidence 45566677885 69999999999999999998 4422 2111111110
Q ss_pred cccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhH-HHHHHH
Q 016139 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD-IEFMER 164 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~d-i~~l~k 164 (394)
. -++....+....... .+ ..|-..++. +..+++++.+|+++++| ||++++|+......... ++.
T Consensus 72 -~--~~~~~~lg~~~~l~~--~~-s~fs~g~~~---~~~i~~~~~~p~llllD---Ep~~glD~~~~~~i~~~~l~~--- 136 (200)
T cd03280 72 -F--ENIFADIGDEQSIEQ--SL-STFSSHMKN---IARILQHADPDSLVLLD---ELGSGTDPVEGAALAIAILEE--- 136 (200)
T ss_pred -c--cEEEEecCchhhhhc--Cc-chHHHHHHH---HHHHHHhCCCCcEEEEc---CCCCCCCHHHHHHHHHHHHHH---
Confidence 0 011111111111111 11 111112221 23344556789999999 99999999875433221 211
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 165 ~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
+......+ .-.+|. .++..+|+++ ..+.+|.+.++
T Consensus 137 -l~~~~~~v-i~~tH~-~~l~~~~d~~-~~l~~g~l~~~ 171 (200)
T cd03280 137 -LLERGALV-IATTHY-GELKAYAYKR-EGVENASMEFD 171 (200)
T ss_pred -HHhcCCEE-EEECCH-HHHHHHHhcC-CCeEEEEEEEe
Confidence 11111112 122386 5677899998 67777877654
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.64 E-value=4.2e-08 Score=95.86 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (394)
-|...++++|+.+-|+|.|||||||++..|||+ ..|++|.|.++|.+++
T Consensus 340 gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-----------~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPVS 388 (546)
T ss_pred cceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCceeECCccCC
Confidence 367788999999999999999999999999999 6799999999998763
No 423
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.64 E-value=1.2e-08 Score=88.17 Aligned_cols=56 Identities=41% Similarity=0.581 Sum_probs=48.3
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
|+|.+|+|||||+|.+++.....+++|++|+.+..+.+.+++. .+.++|+||....
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK-----------------EIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe-----------------EEEEEECCCcccc
Confidence 5899999999999999998766688999999999998888752 4899999998653
No 424
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.63 E-value=2.4e-07 Score=84.45 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
+|+|+|.+|+|||||++.+++........|.++.....-.+.++|.. ..+.++|++|+..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCccc
Confidence 68999999999999999999765433333333222222234455432 2478999999854
No 425
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.63 E-value=7.5e-08 Score=89.70 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHH-HHHH
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLF-NTLT 45 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLl-n~Lt 45 (394)
.-......++.|+++||+|+||||||||+ ..+.
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~ 43 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 44667888999999999999999999995 4443
No 426
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.60 E-value=2.8e-08 Score=101.29 Aligned_cols=88 Identities=26% Similarity=0.255 Sum_probs=67.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.+|+|+|.+|+|||||+|.|+|.... ++++|++|.....+.+.+.|. .+.++||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGR-----------------EFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCc-----------------EEEEEECCCCCCcch
Confidence 37999999999999999999998764 478999999999998888763 489999999975221
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
. ...+.......++.+|++++|+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~ 91 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGR 91 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 0 0112223345678899999888875
No 427
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.59 E-value=2.3e-07 Score=81.35 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=39.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.++.++|++|+|||||++.+++........|..+.+.....+.+.+.. ..+.++|++|..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 478999999999999999999765433322322222233344444422 347899999853
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=1.9e-07 Score=103.15 Aligned_cols=184 Identities=15% Similarity=0.254 Sum_probs=106.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh--hhh--hccCCCcc-ccce
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQ--LFKPKSAV-PAFL 90 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~--l~~--~~~~~~~~-~~~i 90 (394)
.+.|-+++|...||+|.+|||||||+|.|+|.. |.-...|.|.++|.+.+. +++ +|..|..+ -+.+
T Consensus 809 ~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 809 NVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cCceEecCCceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 445667899999999999999999999999983 345678899999987653 222 45555422 2445
Q ss_pred EEEecccccccccCCCC--Cch--hh----hhHH---HhhhhHHhh----------------hhccCCC-CeEEecCCCC
Q 016139 91 EIHDIAGLVRGAHEGQG--LGN--SF----LSHI---RAVDGIFHV----------------LRAFEDP-DIIHVDDSVD 142 (394)
Q Consensus 91 ~~~D~~gl~~~~~~~~~--l~~--~~----l~~l---~~~d~il~v----------------v~a~~~~-~vl~ld~~~e 142 (394)
++.+..-+......... ... .+ .+.+ .-+|+++-+ |....+| .+++|| |
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD---E 956 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD---E 956 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec---C
Confidence 55554433211111000 000 11 1111 123444333 1113678 678999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH-HHHHHHHHHHHHh-cCCCceecCCCChhHHHHHHhh
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWL-QDGKDVRLGDWKAADIEILNTF 217 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~-~~~~l~~ri~~~L-~~g~~~~~~~~~~~e~e~i~~~ 217 (394)
|+++||......++.. +++ +..-.+.+.-. .|+.. .+-+.-|++ -+| ..|+.++.|++.+.-..+|.-+
T Consensus 957 PTSGLDsqaA~~i~~~---lrk-la~tGqtIlCT-IHQPS~~ife~FD~L-LLLkrGGqtVY~G~lG~~s~~li~YF 1027 (1391)
T KOG0065|consen 957 PTSGLDSQAAAIVMRF---LRK-LADTGQTILCT-IHQPSIDIFEAFDEL-LLLKRGGQTVYFGPLGENSSKLIEYF 1027 (1391)
T ss_pred CCCCccHHHHHHHHHH---HHH-HHhcCCeEEEE-ecCCcHHHHHHHhHH-HHHhcCCeEEEecCcccccHHHHHHH
Confidence 9999999885443332 222 22222222111 16654 455677888 555 4578889998876655555433
No 429
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.58 E-value=2e-08 Score=86.48 Aligned_cols=84 Identities=29% Similarity=0.283 Sum_probs=56.5
Q ss_pred EEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc-CC
Q 016139 28 GIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-EG 105 (394)
Q Consensus 28 gliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~-~~ 105 (394)
+++|.+|+|||||+|.|++... ..++.|.+|.......+.+.+ ..+.++|+||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 5899999999999999998754 346788888877777776654 2488999999875432 00
Q ss_pred CCCchhhhhHHHhhhhHHhhhhc
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~a 128 (394)
..+.......++.+|++++++++
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~ 86 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDG 86 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEec
Confidence 11112223445566666665544
No 430
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.57 E-value=8.2e-08 Score=83.82 Aligned_cols=61 Identities=28% Similarity=0.381 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.+++++|.+|+|||||+|+|++.... ..+.|++|.....+.+...+. .+.++|+||+....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~iiDtpG~~~~~ 64 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK-----------------KYTLIDTAGIRRKG 64 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe-----------------eEEEEECCCCcccc
Confidence 47899999999999999999987643 367888888776666666553 37899999987543
No 431
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.57 E-value=5e-08 Score=100.61 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.-+|+|+|.+|||||||||.|++.... ..+.|++|.+...+.+.+.|. .+.++|++|+....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~ 100 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR-----------------RFTVVDTGGWEPDA 100 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc-----------------EEEEEeCCCcCCcc
Confidence 358999999999999999999997653 478999998888888887763 37899999986322
Q ss_pred cC-CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 103 HE-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~-~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
.. ...+.......++.+|++++|+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~ 128 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDAT 128 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 11 0011122334577899999988875
No 432
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.4e-08 Score=96.65 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP 69 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~ 69 (394)
-|.+..+|+||||||+|||||++.|+|. ++|+.|..+-+
T Consensus 609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gk-----------l~P~~GE~RKn 647 (807)
T KOG0066|consen 609 GIDMDSRIAIVGPNGVGKSTLLKLLIGK-----------LDPNDGELRKN 647 (807)
T ss_pred cccccceeEEECCCCccHHHHHHHHhcC-----------CCCCcchhhcc
Confidence 3556789999999999999999999998 88999986543
No 433
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.56 E-value=4.4e-08 Score=84.63 Aligned_cols=61 Identities=33% Similarity=0.326 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+++++|++|||||||+|.++|..... .+.+.+|.....+.....+ ..+.++|+||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcc
Confidence 3579999999999999999999986533 5556666555555443332 24789999998654
No 434
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.55 E-value=4.6e-08 Score=85.03 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~---~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
+.++++|.+|||||||+|+|++..... ...+.+|+.+....+.+.+ ...+.++|+||....
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~~~ 64 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHEKF 64 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChHHH
Confidence 478999999999999999999854211 2234556665555555441 125899999996321
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.......++.+|++++|+|+
T Consensus 65 -------~~~~~~~~~~ad~ii~V~d~ 84 (164)
T cd04171 65 -------IKNMLAGAGGIDLVLLVVAA 84 (164)
T ss_pred -------HHHHHhhhhcCCEEEEEEEC
Confidence 11222344566666666555
No 435
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.54 E-value=2e-07 Score=80.04 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=73.2
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----hccCCC-ccccce
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVPAFL 90 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~~~~-~~~~~i 90 (394)
....|.+|+++.|.||+|+|||||+.-+.|... +--.-+|.+.+++++++.+.. ....|. -.+.++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La--------~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA--------GQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcc--------cCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 344688999999999999999999999999832 122357999999998876543 122222 223344
Q ss_pred EEEeccccccccc-CCCC---CchhhhhHHHh--------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 91 EIHDIAGLVRGAH-EGQG---LGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 91 ~~~D~~gl~~~~~-~~~~---l~~~~l~~l~~--------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
.+..+.-+.-.+. ++.. ..+..+..... -.+-+.+.|++ ..|..+.+| ||++.+|.--
T Consensus 93 sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD---EPFS~LD~AL 169 (213)
T COG4136 93 SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD---EPFSRLDVAL 169 (213)
T ss_pred ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC---CchhHHHHHH
Confidence 4444333221111 1111 11111111111 01124455665 789999999 9999888754
No 436
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.53 E-value=3.6e-07 Score=79.56 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+++++|++|+|||||++.+++........|..+.+...-.+.+.+.. ..+.++|++|..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKE---------------VRVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeE---------------EEEEEEECCccH
Confidence 68999999999999999999875422211111111112234444322 358899999874
No 437
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.52 E-value=3.8e-08 Score=93.77 Aligned_cols=89 Identities=29% Similarity=0.467 Sum_probs=70.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.-.|++||.+|||||||+|+||+...-..+.-|.|++|+.-...++.. ..+-+.||.|+.....
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDTvGFisdLP 241 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDTVGFISDLP 241 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC----------------cEEEEeechhhhhhCc
Confidence 458999999999999999999977666688899999999887777653 2377899999986543
Q ss_pred CCCCCchhh---hhHHHhhhhHHhhhhccC
Q 016139 104 EGQGLGNSF---LSHIRAVDGIFHVLRAFE 130 (394)
Q Consensus 104 ~~~~l~~~~---l~~l~~~d~il~vv~a~~ 130 (394)
. .+...| ++.+..+|+++||+|.++
T Consensus 242 ~--~LvaAF~ATLeeVaeadlllHvvDiSh 269 (410)
T KOG0410|consen 242 I--QLVAAFQATLEEVAEADLLLHVVDISH 269 (410)
T ss_pred H--HHHHHHHHHHHHHhhcceEEEEeecCC
Confidence 2 233333 667788999999998863
No 438
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.52 E-value=1.7e-07 Score=83.56 Aligned_cols=55 Identities=31% Similarity=0.521 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
...++++|.||+|||||+|+|+|... .+++.|++|...+... +. ..+.++|+||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~~------------------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LD------------------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--eC------------------CCEEEEECcCC
Confidence 46899999999999999999999766 5589999998654433 22 24899999985
No 439
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.51 E-value=1.4e-07 Score=97.29 Aligned_cols=86 Identities=26% Similarity=0.426 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..+++|+|+||||||||+|.|++... ..+++|++|.++....+.++|. .+.++||||+.+..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~-----------------~~~l~DTaG~~~~~ 273 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK-----------------TWRFVDTAGLRRRV 273 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE-----------------EEEEEECCCccccc
Confidence 47999999999999999999999865 3589999999998888888763 36899999986543
Q ss_pred cCCCCCchhhh------hHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFL------SHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l------~~l~~~d~il~vv~a 128 (394)
... .+..+. ..++.+|+++.|+|+
T Consensus 274 ~~~--~~~e~~~~~~~~~~i~~ad~vilV~Da 303 (472)
T PRK03003 274 KQA--SGHEYYASLRTHAAIEAAEVAVVLIDA 303 (472)
T ss_pred ccc--chHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 221 111211 234556666666555
No 440
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.49 E-value=1.5e-07 Score=80.24 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=57.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCCCC
Q 016139 29 IVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (394)
Q Consensus 29 liG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~~~ 107 (394)
|+|++|||||||+|.|++.... .++.+.+|..+........+ ...+.++|+||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999998665 57788888777766665542 135899999998765443222
Q ss_pred CchhhhhHHHhhhhHHhhhhc
Q 016139 108 LGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 108 l~~~~l~~l~~~d~il~vv~a 128 (394)
........++.+|++++++++
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~ 85 (163)
T cd00880 65 REELARRVLERADLILFVVDA 85 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeC
Confidence 112333445556666655544
No 441
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.49 E-value=6.9e-08 Score=83.91 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+++++|++|||||||++.+++.....+..|.+|.+.....+.+++.. ..+.++|+||..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 68999999999999999999987766777777777777777776532 247899999853
No 442
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.48 E-value=8.3e-07 Score=77.22 Aligned_cols=59 Identities=25% Similarity=0.299 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|+|||||++.+.+... ...++.++.......+.+.+.. ..+.++|+||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQW---------------AILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEE---------------EEEEEEECCCCc
Confidence 5899999999999999999987642 2334433322222233344321 347889999964
No 443
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.48 E-value=2.6e-07 Score=84.29 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+..| +++|+||||||||||+++|.+.
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 34457788 9999999999999999999987
No 444
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.47 E-value=1.6e-07 Score=95.79 Aligned_cols=90 Identities=27% Similarity=0.327 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....++|+|.+|+|||||+|+|++... .+++.|++|+......+...+. .+.++|+||+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ-----------------KYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe-----------------eEEEEECCCCCCC
Confidence 357999999999999999999998865 3478899998776666655542 4789999998765
Q ss_pred ccCCCCCc----hhhhhHHHhhhhHHhhhhcc
Q 016139 102 AHEGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 102 ~~~~~~l~----~~~l~~l~~~d~il~vv~a~ 129 (394)
.....++. .+.++.++.+|+++.|+|+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~ 266 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCC
Confidence 44322111 12234566677777766653
No 445
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.47 E-value=2.2e-07 Score=84.87 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=25.1
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..|..++|+||||+|||||+++|.+.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4566889999999999999999999875
No 446
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.46 E-value=3.9e-07 Score=84.05 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+|+++++| ||++++|+...+.....+..+. +. ...+ .-.+|+...+..+|+++ .++++|
T Consensus 151 ~~~~lllD---Ep~~~lD~~~~~~~~~~l~~~~---~~-~~ti-i~itH~~~~~~~~~~~i-~~~~~~ 209 (213)
T cd03279 151 RLEALFID---EGFGTLDPEALEAVATALELIR---TE-NRMV-GVISHVEELKERIPQRL-EVIKTP 209 (213)
T ss_pred CCCEEEEe---CCcccCCHHHHHHHHHHHHHHH---hC-CCEE-EEEECchHHHHhhCcEE-EEEecC
Confidence 67899999 9999999988654433322111 10 1111 12249998888888887 666655
No 447
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.45 E-value=2.6e-07 Score=80.91 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=42.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
+..++++|+||+|||||+|+|.+... ..++.|++|.... .+..+ ..+.++|+||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC------------------CCEEEEECcCC
Confidence 56789999999999999999999765 4488888876432 23322 23789999985
No 448
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3e-07 Score=90.67 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=94.6
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccccc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAF 89 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~~~ 89 (394)
....++.|.+++++|+.|+||||+.+.|.+. .++++|.|.++|+++....+ ...||+.+-..
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRF-----------yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRF-----------YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHH-----------hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 3445778999999999999999999999999 78999999999998754332 45676643222
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhH-------------------------Hhhhhcc-CCCCeEEecCCCCC
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI-------------------------FHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~i-------------------------l~vv~a~-~~~~vl~ld~~~eP 143 (394)
=++.-+..+.+.....+... ...+..+..+.+ +.+.|++ .+|.++++| |.
T Consensus 351 Dti~yni~ygr~~at~eev~-aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~d---ea 426 (497)
T COG5265 351 DTIAYNIKYGRPDATAEEVG-AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD---EA 426 (497)
T ss_pred hhHHHHHhccCccccHHHHH-HHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEe---hh
Confidence 11111111111100000000 000011111111 3455554 699999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++.+|.-.+..+...+..+.+. +..+ -..|.+..+-. .|.| ..|++|+++..|+
T Consensus 427 tsaldt~te~~iq~~l~~~~~~----rttl--viahrlsti~~-adei-ivl~~g~i~erg~ 480 (497)
T COG5265 427 TSALDTHTEQAIQAALREVSAG----RTTL--VIAHRLSTIID-ADEI-IVLDNGRIVERGT 480 (497)
T ss_pred hhHhhhhHHHHHHHHHHHHhCC----CeEE--EEeehhhhccC-CceE-EEeeCCEEEecCc
Confidence 9999998864443332221110 0000 00165554322 3556 6778888877664
No 449
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=4.1e-07 Score=79.51 Aligned_cols=57 Identities=28% Similarity=0.519 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
..+..++++|.||+|||||+|+|++... .+++.|++|..+....+ + ..+.++|+||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D------------------NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c------------------CCEEEEECCCC
Confidence 3567899999999999999999999764 56888999988765432 2 23899999986
No 450
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.44 E-value=1.1e-07 Score=102.70 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..|+|+|.||+|||||||.|+|....+ ++.|++|.+...+...+.+. .+.++||+|+.....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT-----------------DFKLVDTGGWEADVE 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE-----------------EEEEEeCCCcCCCCc
Confidence 479999999999999999999976543 78999998888777777653 478999999864221
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
. ...+..+....++.+|++++|+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 1112223345578899999988874
No 451
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.44 E-value=2.5e-07 Score=83.57 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC---------CCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEE
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLA---------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~---------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
.+..++++|.+|+|||||+|+|.+.. +.+++.|+||+.+....+. ..+.++
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~ 185 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLY 185 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEE
Confidence 45689999999999999999999853 2457889999888655442 137899
Q ss_pred ecccc
Q 016139 94 DIAGL 98 (394)
Q Consensus 94 D~~gl 98 (394)
||||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99996
No 452
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.43 E-value=5.5e-07 Score=81.15 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 130 ~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
..-.++.|| |-+-|+|++.+.- .++++++.-+.-...+... +|..+.++..-.++ .++..|++.....++
T Consensus 164 ~PfkVLLLD---EVTVDLDVlARad---LLeFlkeEce~RgatIVYA-THIFDGLe~Wpthl-~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 164 KPFKVLLLD---EVTVDLDVLARAD---LLEFLKEECEQRGATIVYA-THIFDGLETWPTHL-VYIKSGKLVDNLKYQ 233 (291)
T ss_pred cceeEEEee---eeEeehHHHHHHH---HHHHHHHHHhhcCcEEEEE-eeeccchhhcchhE-EEecCCeeeeccccc
Confidence 355788899 8888999998622 2344444433222223222 49999988888888 889999988665554
No 453
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.43 E-value=2.7e-07 Score=93.93 Aligned_cols=89 Identities=29% Similarity=0.319 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..+++++|.+|+|||||+|.|++.... .++.|++|.++....+...|. .+.++|+||+.+..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~ 234 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK-----------------KYLLIDTAGIRRKG 234 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-----------------EEEEEECCCccccc
Confidence 358999999999999999999997653 488999999888787777653 37899999997654
Q ss_pred cCCCCCc----hhhhhHHHhhhhHHhhhhcc
Q 016139 103 HEGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~~~~l~----~~~l~~l~~~d~il~vv~a~ 129 (394)
.....+. .+.+..++.+|++++|+|+.
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~ 265 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDAT 265 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 3321111 12234566777777766653
No 454
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.42 E-value=2.5e-07 Score=99.97 Aligned_cols=86 Identities=29% Similarity=0.395 Sum_probs=63.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.+++|+|.+|||||||+|.|++.... ++++|+||.++....+.+.|. .+.++||||+.+...
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~-----------------~~~liDTaG~~~~~~ 513 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE-----------------DWLFIDTAGIKRRQH 513 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC-----------------EEEEEECCCcccCcc
Confidence 68999999999999999999998764 489999999998888888763 377999999875433
Q ss_pred CCCCCchhh------hhHHHhhhhHHhhhhcc
Q 016139 104 EGQGLGNSF------LSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 104 ~~~~l~~~~------l~~l~~~d~il~vv~a~ 129 (394)
... +..+ ...++.+|+++.|+|+.
T Consensus 514 ~~~--~~e~~~~~r~~~~i~~advvilViDat 543 (712)
T PRK09518 514 KLT--GAEYYSSLRTQAAIERSELALFLFDAS 543 (712)
T ss_pred cch--hHHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 211 1111 22345667777666653
No 455
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.42 E-value=1.4e-06 Score=76.03 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+++++|++|||||||++.+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999999764
No 456
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.42 E-value=2e-07 Score=85.28 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=27.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+....+..|++++|+||||+|||||+++|.+.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 344445677899999999999999999999954
No 457
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.40 E-value=1.5e-06 Score=75.19 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+++++|++|+|||||++.+++..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999764
No 458
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.40 E-value=5.4e-07 Score=85.11 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=50.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
......|+|+|.+|+|||||+|+|+|... ..+.++.+|..+........| ..+.++||||+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPGl~ 90 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPGLL 90 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcC
Confidence 34467999999999999999999999875 346777777777666655554 248999999997
Q ss_pred cc
Q 016139 100 RG 101 (394)
Q Consensus 100 ~~ 101 (394)
..
T Consensus 91 ~~ 92 (249)
T cd01853 91 ES 92 (249)
T ss_pred cc
Confidence 54
No 459
>PRK04213 GTP-binding protein; Provisional
Probab=98.40 E-value=3.2e-07 Score=83.25 Aligned_cols=55 Identities=33% Similarity=0.371 Sum_probs=43.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
...++++|++|||||||+|.|+|.....+..|++|..+.. +.+. .+.++|+||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~-------------------~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG-------------------DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec-------------------ceEEEeCCccc
Confidence 3589999999999999999999987666778888776543 2221 38999999974
No 460
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.39 E-value=3.2e-07 Score=91.21 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=33.7
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeE
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR 65 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~ 65 (394)
-|.+..|+++|++||||-||||+.++|+|. ++|+.|.
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~-----------ikPdeg~ 397 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGV-----------IKPDEGS 397 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcc-----------ccCCCCC
Confidence 356788999999999999999999999999 8899886
No 461
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.39 E-value=2.8e-07 Score=83.01 Aligned_cols=57 Identities=32% Similarity=0.278 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~--~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
...++|+|.+|||||||+|.|++.. ...++.|++|..+....+ ..++.++|+||+..
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~l~l~DtpG~~~ 82 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--------------------NDKLRLVDLPGYGY 82 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--------------------CCeEEEeCCCCCCC
Confidence 4689999999999999999999864 344666776655432221 13489999999764
No 462
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.38 E-value=5.5e-07 Score=91.81 Aligned_cols=169 Identities=16% Similarity=0.224 Sum_probs=102.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~- 85 (394)
......++.|+++||.|.-|||+|-|+++|.|. ..+.+|.|.++|+++...+ -.|.|..+
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~-----------~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk 344 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGA-----------RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCC-----------CcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccc
Confidence 456678899999999999999999999999998 5578999999998764322 14666331
Q ss_pred ---cccceEEEeccccc--ccccCCCCCc--------hhhhhHH--Hhhhh---H----------Hhhhhcc-CCCCeEE
Q 016139 86 ---VPAFLEIHDIAGLV--RGAHEGQGLG--------NSFLSHI--RAVDG---I----------FHVLRAF-EDPDIIH 136 (394)
Q Consensus 86 ---~~~~i~~~D~~gl~--~~~~~~~~l~--------~~~l~~l--~~~d~---i----------l~vv~a~-~~~~vl~ 136 (394)
+.....+.++..+. .......-+. .++...+ +..+. + +.+.+.+ .+|++++
T Consensus 345 ~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 345 SEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred cCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 12222222322222 0000000000 0011110 00000 0 3455555 7899999
Q ss_pred ecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 137 ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
+| ||++++|+=.+..+...+..+.+ -...+..- +-.+.++..+|||| .++.+|++...
T Consensus 425 lD---EPTRGIDVGAK~eIy~li~~lA~----~G~ail~i-SSElpEll~~~DRI-lVm~~Gri~~e 482 (500)
T COG1129 425 LD---EPTRGIDVGAKAEIYRLIRELAA----EGKAILMI-SSELPELLGLSDRI-LVMREGRIVGE 482 (500)
T ss_pred EC---CCCcCcccchHHHHHHHHHHHHH----CCCEEEEE-eCChHHHHhhCCEE-EEEECCEEEEE
Confidence 99 99999999886555444332221 11111111 25789999999999 99999998753
No 463
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=4.9e-07 Score=81.37 Aligned_cols=58 Identities=31% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~--~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
...-|+++|++|+|||||+|+|+|.. +..|..|+.|..++-=.+ . ..+.++|+||++-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--D------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--c------------------CcEEEEeCCCccc
Confidence 45679999999999999999999977 466999999988775443 2 2378999999863
No 464
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.38 E-value=1e-06 Score=84.20 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
..++|+||||||||||+++|+|. +.|.+|.+.++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~-----------~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI-----------LSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc-----------cCCCCceEEECCEEe
Confidence 58899999999999999999999 779999999999765
No 465
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.37 E-value=1.7e-06 Score=78.66 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
++.++|++|||||||++.+++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~ 24 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI 24 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999763
No 466
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.37 E-value=2.1e-07 Score=83.13 Aligned_cols=59 Identities=29% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~-~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
....++|+|++|+|||||+|.|++.. . ..++.+++|..+....+ + ..+.++|+||+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~~ 76 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYGY 76 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCcc
Confidence 34689999999999999999999874 2 34667777765543322 1 1489999999864
Q ss_pred c
Q 016139 101 G 101 (394)
Q Consensus 101 ~ 101 (394)
.
T Consensus 77 ~ 77 (179)
T TIGR03598 77 A 77 (179)
T ss_pred c
Confidence 3
No 467
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.35 E-value=6.9e-07 Score=92.88 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=68.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
+...-.++.|+.+-|.|++|||||||+++|+|+ +| --+|.|.+|.. -...|.||+.-...-++.|
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL------WP-----~g~G~I~~P~~----~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGL------WP-----WGSGRISMPAD----SALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc------Cc-----cCCCceecCCC----CceEEecCCCCCCCccHHH
Confidence 455567889999999999999999999999999 23 23477776621 1124555553222234444
Q ss_pred cccccccccC--CCCCchhhhh---------HHHhh---h--------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 95 IAGLVRGAHE--GQGLGNSFLS---------HIRAV---D--------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 95 ~~gl~~~~~~--~~~l~~~~l~---------~l~~~---d--------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
..-+....+. ...+ .+.+. ++... | --+.++|.+ +.|+.+++| |.++.+|.-.
T Consensus 475 ~l~YP~~~~~~~d~~l-~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD---EATsALDe~~ 550 (604)
T COG4178 475 ALCYPNAAPDFSDAEL-VAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD---EATSALDEET 550 (604)
T ss_pred HHhCCCCCCCCChHHH-HHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe---cchhccChHH
Confidence 4333322210 0000 00011 11000 0 014455655 799999999 8888888766
Q ss_pred H
Q 016139 152 A 152 (394)
Q Consensus 152 ~ 152 (394)
+
T Consensus 551 e 551 (604)
T COG4178 551 E 551 (604)
T ss_pred H
Confidence 4
No 468
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.35 E-value=3.2e-06 Score=73.81 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|.+|||||||++.+..... ..+++.|+.....-.+.+++.. ..+.++|++|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEE---------------EEEEEEECCCcc
Confidence 3789999999999999999885422 2334433332222234444321 246899999864
No 469
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.34 E-value=7e-07 Score=87.72 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=100.6
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhh----c-------c
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL----F-------K 81 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~----~-------~ 81 (394)
.-+.....+..|+++||||.+|||||-..++++++.+.. . ...-+|.|.+.|.++-.++.- . .
T Consensus 25 aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~----~--~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MI 98 (534)
T COG4172 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP----A--AAHPSGSILFDGEDLLAASERQLRGVRGNKIGMI 98 (534)
T ss_pred eeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCC----c--ccCccceeEEcChhhhcCCHHHHhhhcccceEEE
Confidence 346677889999999999999999999999999985421 1 112368899998876433320 0 0
Q ss_pred CCCc---------cc--------------------cceEEEecccccccc-------cCCCCCchhhhhHHHhhhhHHhh
Q 016139 82 PKSA---------VP--------------------AFLEIHDIAGLVRGA-------HEGQGLGNSFLSHIRAVDGIFHV 125 (394)
Q Consensus 82 ~~~~---------~~--------------------~~i~~~D~~gl~~~~-------~~~~~l~~~~l~~l~~~d~il~v 125 (394)
.|+. +. ..+++.+..|+.... ++ .+-|.+ ++ +.+
T Consensus 99 FQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHe-LSGGqR--QR-------VMI 168 (534)
T COG4172 99 FQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE-LSGGQR--QR-------VMI 168 (534)
T ss_pred ecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcc-cCcchh--hH-------HHH
Confidence 0110 00 001112222221100 00 000000 01 223
Q ss_pred hhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 126 LRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 126 v~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
+-|+ .+|++++.| ||+..+|+--+.-++..+..+++.+ ...+ .-.+|++.-+..+.||| .+|.+|+++-.+
T Consensus 169 AMALan~P~lLIAD---EPTTALDVtvQaQIL~Ll~~Lq~~~---gMa~-lfITHDL~iVr~~ADrV-~VM~~G~ivE~~ 240 (534)
T COG4172 169 AMALANEPDLLIAD---EPTTALDVTVQAQILDLLKELQAEL---GMAI-LFITHDLGIVRKFADRV-YVMQHGEIVETG 240 (534)
T ss_pred HHHHcCCCCeEeec---CCcchhhhhhHHHHHHHHHHHHHHh---CcEE-EEEeccHHHHHHhhhhE-EEEeccEEeecC
Confidence 3344 689999999 9999999977655555444443332 1111 11249999999999999 999999987654
Q ss_pred C
Q 016139 205 D 205 (394)
Q Consensus 205 ~ 205 (394)
.
T Consensus 241 ~ 241 (534)
T COG4172 241 T 241 (534)
T ss_pred c
Confidence 3
No 470
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.34 E-value=1e-06 Score=82.58 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+++|+||||||||||+++|.+.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999843
No 471
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.31 E-value=3.3e-07 Score=80.44 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
+|+++|++|+|||||+|.|+|... .....+.+.+.+. .++|+||.......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~~~~-------------------~~iDtpG~~~~~~~- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEFNDK-------------------GDIDTPGEYFSHPR- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEECCC-------------------CcccCCccccCCHH-
Confidence 699999999999999999998732 1234455555431 26999997533211
Q ss_pred CCCchhhhhHHHhhhhHHhhhhc
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+...+...++.+|++++|+++
T Consensus 54 --~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 54 --WYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred --HHHHHHHHHhcCCEEEEEEeC
Confidence 112223345666776666554
No 472
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.31 E-value=6.6e-07 Score=80.33 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
...+++|+|++|||||||++.+++.... ....|..|+.+.+.+.+. .+.++|++|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~-----------------~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNI-----------------KFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCE-----------------EEEEEECCCCH
Confidence 3468899999999999999999986532 233467778888877652 37889999853
No 473
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.30 E-value=2.5e-06 Score=74.79 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.++.++|++|+|||||++.+++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~ 26 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999763
No 474
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.29 E-value=5.5e-07 Score=79.33 Aligned_cols=51 Identities=33% Similarity=0.500 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcee----EEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G----~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
..+++|+|+||||||||++.|++... ++..|+.| .+...+ ..+.++|++|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~-------~~~~~t~g~~~~~i~~~~-----------------~~~~~~D~~G~ 68 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI-------SHITPTQGFNIKTVQSDG-----------------FKLNVWDIGGQ 68 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC-------cccCCCCCcceEEEEECC-----------------EEEEEEECCCC
Confidence 56899999999999999999998732 12345555 455443 24788999875
No 475
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.29 E-value=1.1e-06 Score=80.49 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.8
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHH
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Lt 45 (394)
.+..| +++|+||||||||||+.+|.
T Consensus 19 ~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35555 99999999999999999995
No 476
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.29 E-value=3.9e-07 Score=79.74 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPA----ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~----~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.++++|++|+|||||++.|++..... ...+.+|+..+.+.+.+++ ..+.++|+||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCCh
Confidence 37899999999999999998764321 1233445555666666654 348999999874
No 477
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=98.29 E-value=8.3e-07 Score=95.05 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=57.4
Q ss_pred CcEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEE
Q 016139 303 NLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDII 382 (394)
Q Consensus 303 ~li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii 382 (394)
+-|-+||- .-++..+|+|||+.|+|..||||+...++.|+|.+ ++++.||+|++||+|
T Consensus 360 ~~i~vfTP---kG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng-------------------~~v~l~~~l~~gd~v 417 (683)
T TIGR00691 360 EEIYVFTP---KGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNG-------------------KIVPLDKELENGDVV 417 (683)
T ss_pred CceEEECC---CCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECC-------------------EECCCCccCCCCCEE
Confidence 66778882 36899999999999999999999999999999765 678999999999999
Q ss_pred EEEEecC
Q 016139 383 FFKFNVS 389 (394)
Q Consensus 383 ~~~f~~~ 389 (394)
+|..+-.
T Consensus 418 ei~t~~~ 424 (683)
T TIGR00691 418 EIITGKN 424 (683)
T ss_pred EEEeCCC
Confidence 9987653
No 478
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.28 E-value=3.1e-07 Score=78.13 Aligned_cols=59 Identities=36% Similarity=0.336 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.+++++|++|||||||++.+++........|++|.......+.+++.. ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCc
Confidence 378999999999999999999987555667777777666666665421 24788999994
No 479
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.28 E-value=3.9e-07 Score=85.48 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+-|.|.+|||||+|+|+|.+... +++..+.||..++.-...+.+ ..+.++|+||+.++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcccc
Confidence 345677999999999999999996544 334455555444433333333 35899999999987
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
..++......+.+.+...|+++.+.++
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~ 127 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKA 127 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccC
Confidence 765544455566667777766665555
No 480
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.28 E-value=1.4e-06 Score=84.13 Aligned_cols=60 Identities=33% Similarity=0.456 Sum_probs=48.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+.+++++|.||+|||||+|+|+|... .+++.|++|..++ .+.+. ..+.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC------------------CcEEEEECCCcCC
Confidence 3457899999999999999999999876 6689999998764 34443 2488999999965
Q ss_pred c
Q 016139 101 G 101 (394)
Q Consensus 101 ~ 101 (394)
.
T Consensus 179 ~ 179 (287)
T PRK09563 179 P 179 (287)
T ss_pred C
Confidence 4
No 481
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.28 E-value=3.5e-06 Score=74.78 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.++.++|++|||||||++.+++..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998763
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.27 E-value=5.4e-07 Score=77.24 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 016139 27 IGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 27 vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
++|+|++|||||||+|.|++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC
Confidence 78999999999999999998754
No 483
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.25 E-value=8.7e-07 Score=78.05 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.+++++|++|+|||||++.+++........|..+.+.....+.+.+.. ..+.++|++|.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQ---------------IKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCc
Confidence 489999999999999999999875433333333333334445554422 24789999984
No 484
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.25 E-value=5.4e-07 Score=78.74 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=41.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.++|+|++|||||||+++|++........+++|.......+.... .....+.++|+||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV--------------LKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc--------------CCcceEEEEeCCCcH
Confidence 589999999999999999998765444455555554444444320 001348999999964
No 485
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.22 E-value=1e-06 Score=75.40 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+++++|++|||||||++.+++........|..+.+.....+.+++. ...+.++|+||..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChH
Confidence 6899999999999999999988654443333232222233333321 1347899999863
No 486
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.22 E-value=6.7e-07 Score=77.71 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+++++|++|||||||++.+++........|..+.+...-.+.+++.. ..+.++|++|..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR---------------VKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChH
Confidence 68999999999999999999875533333333333333344444421 247899999853
No 487
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.22 E-value=2.5e-06 Score=81.93 Aligned_cols=59 Identities=34% Similarity=0.461 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....++++|.||+|||||+|.|++... .+++.|++|..++ .+.+. ..+.++|+||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC------------------CCEEEEECCCcccC
Confidence 456899999999999999999998764 5589999998764 44443 23799999999654
No 488
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.22 E-value=8.8e-07 Score=79.56 Aligned_cols=80 Identities=25% Similarity=0.362 Sum_probs=53.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+...++++|++|||||||++.+++.... . ..+|..|+.+.+.+.+ ..+.++|++|....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~ 74 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--Q-HQPTQHPTSEELAIGN-----------------IKFTTFDLGGHQQA 74 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccccceEEEEECC-----------------EEEEEEECCCCHHH
Confidence 44578999999999999999999986432 1 1345666666666554 24789999997532
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|++++|+|+
T Consensus 75 ~~-------~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 75 RR-------LWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred HH-------HHHHHhCCCCEEEEEEEC
Confidence 11 112344566777666555
No 489
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.22 E-value=6.5e-07 Score=94.61 Aligned_cols=54 Identities=43% Similarity=0.604 Sum_probs=48.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 31 GLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 31 G~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
|.||+|||||+|.++|....++++|++|.+...|.+.++|. .+.++|+||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~-----------------~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE-----------------DIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe-----------------EEEEEECCCcccc
Confidence 89999999999999999887899999999999999988763 3789999998753
No 490
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.18 E-value=5.7e-06 Score=76.33 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Lt 45 (394)
+++||+|||||||||++++|+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999998
No 491
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.18 E-value=7.5e-06 Score=75.35 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+|.++|++|+|||||++.+++...
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~ 27 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF 27 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999997643
No 492
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.17 E-value=3.4e-06 Score=81.47 Aligned_cols=61 Identities=28% Similarity=0.358 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|.|+|.+|+||||++|.|+|..+.. ++++.+|..+......+.| ..+.++||||+...
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIEG 99 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCch
Confidence 3589999999999999999999987643 6777777666655555554 34899999999764
No 493
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.16 E-value=3.8e-06 Score=72.24 Aligned_cols=54 Identities=35% Similarity=0.476 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.++++|++|+|||||+|+|++... ..++.|++|.... .+.+++ .+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~------------------~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLTP------------------TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeCC------------------CEEEEECCCcC
Confidence 899999999999999999998865 4467777776643 233332 37999999985
No 494
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.16 E-value=2.2e-06 Score=79.02 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=42.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE--NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~--~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+|.|+|++||||||+.|.|+|...-.+ ....+|.........+.|. .+.++||||+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR-----------------QVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE-----------------EEEEEE--SSEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce-----------------EEEEEeCCCCCCCc
Confidence 578999999999999999999976332 3445677777777777774 48999999996543
No 495
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.16 E-value=2.6e-05 Score=72.29 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc-CCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI-EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~-~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+|+++|++|+|||||++.+++.......++.+.- +...-.+.+.+. ...+.++|++|..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGE---------------ESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCE---------------EEEEEEEeCCCcc
Confidence 6899999999999999999754322112221110 111223444432 2358899999875
No 496
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.15 E-value=1.3e-06 Score=76.56 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
+++++|++|||||||++.+++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~ 25 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF 25 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998743
No 497
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.12 E-value=3e-06 Score=77.14 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.+++|+|++|||||||+|+|+|..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999974
No 498
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.12 E-value=2.4e-06 Score=74.21 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
+++++|++|||||||++.+++...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~ 25 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998754
No 499
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.11 E-value=1.8e-06 Score=75.08 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
++.++|++|+|||||++.+++........|..+.+...-.+.+++.. ..+.++|++|..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKR---------------VKLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEECcchH
Confidence 68999999999999999999875433222222222223334444321 247899999863
No 500
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.11 E-value=2.3e-06 Score=76.02 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.|+|+|.+|||||||+|+|++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC
Confidence 379999999999999999998754
Done!