Query 016139
Match_columns 394
No_of_seqs 465 out of 3222
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 3.5E-87 1.2E-91 665.9 30.6 384 1-388 1-391 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 7.4E-88 2.5E-92 669.3 25.0 392 1-394 1-395 (396)
3 1jal_A YCHF protein; nucleotid 100.0 2.2E-83 7.4E-88 631.6 24.9 362 23-388 1-363 (363)
4 2dby_A GTP-binding protein; GD 100.0 4.9E-80 1.7E-84 611.0 29.5 361 25-388 2-368 (368)
5 1wxq_A GTP-binding protein; st 100.0 8E-51 2.7E-55 406.6 18.7 331 26-386 2-394 (397)
6 4a9a_A Ribosome-interacting GT 100.0 8.4E-51 2.9E-55 401.9 7.7 291 25-386 73-375 (376)
7 2eki_A DRG 1, developmentally- 99.8 8.8E-20 3E-24 142.2 5.3 78 298-387 5-87 (93)
8 4g1u_C Hemin import ATP-bindin 99.7 4.2E-18 1.4E-22 161.0 1.7 173 15-206 28-232 (266)
9 3fvq_A Fe(3+) IONS import ATP- 99.7 1.3E-17 4.6E-22 163.5 3.4 173 15-206 21-223 (359)
10 3tui_C Methionine import ATP-b 99.7 8.4E-18 2.9E-22 165.1 1.2 173 15-206 45-248 (366)
11 1ji0_A ABC transporter; ATP bi 99.6 5.3E-17 1.8E-21 151.2 4.4 170 16-205 24-222 (240)
12 2olj_A Amino acid ABC transpor 99.6 1.1E-17 3.6E-22 158.0 -0.4 170 16-205 42-242 (263)
13 3rlf_A Maltose/maltodextrin im 99.6 1.9E-17 6.5E-22 163.5 1.2 173 15-206 20-218 (381)
14 1b0u_A Histidine permease; ABC 99.6 1.1E-17 3.8E-22 157.8 -0.5 171 15-205 23-236 (262)
15 2yyz_A Sugar ABC transporter, 99.6 4E-17 1.4E-21 160.4 3.1 172 15-205 20-217 (359)
16 3tif_A Uncharacterized ABC tra 99.6 3.6E-17 1.2E-21 151.9 2.5 173 15-207 22-230 (235)
17 2onk_A Molybdate/tungstate ABC 99.6 3.1E-17 1E-21 152.8 1.9 170 16-205 17-210 (240)
18 3d31_A Sulfate/molybdate ABC t 99.6 4.4E-17 1.5E-21 159.5 1.9 172 15-205 17-211 (348)
19 1z47_A CYSA, putative ABC-tran 99.6 4.2E-17 1.4E-21 159.9 1.2 172 15-205 32-229 (355)
20 1udx_A The GTP-binding protein 99.6 2.2E-16 7.4E-21 158.1 6.1 100 13-128 146-245 (416)
21 1v43_A Sugar-binding transport 99.6 7.3E-17 2.5E-21 159.2 2.3 172 15-205 28-225 (372)
22 3gfo_A Cobalt import ATP-bindi 99.6 1.6E-17 5.6E-22 157.7 -2.3 173 15-206 25-228 (275)
23 1vpl_A ABC transporter, ATP-bi 99.6 4.8E-17 1.7E-21 152.9 0.9 170 16-205 33-229 (256)
24 1g6h_A High-affinity branched- 99.6 3.6E-17 1.2E-21 153.8 -0.1 172 15-206 24-237 (257)
25 2it1_A 362AA long hypothetical 99.6 5.1E-17 1.7E-21 159.8 0.6 172 15-205 20-217 (362)
26 2pcj_A ABC transporter, lipopr 99.6 1.8E-17 6.3E-22 152.8 -2.5 169 15-204 21-221 (224)
27 2qi9_C Vitamin B12 import ATP- 99.6 4.7E-17 1.6E-21 152.4 -0.0 169 16-205 18-216 (249)
28 1g29_1 MALK, maltose transport 99.6 7.2E-17 2.5E-21 159.4 1.2 172 16-206 21-224 (372)
29 1oxx_K GLCV, glucose, ABC tran 99.6 5.5E-17 1.9E-21 159.2 -0.6 171 16-205 23-224 (353)
30 3nh6_A ATP-binding cassette SU 99.6 9.4E-17 3.2E-21 154.6 0.1 168 16-206 72-272 (306)
31 2yz2_A Putative ABC transporte 99.6 9.1E-17 3.1E-21 151.9 -2.1 171 15-205 24-221 (266)
32 2ff7_A Alpha-hemolysin translo 99.6 2.3E-16 8E-21 147.5 0.4 168 15-205 26-226 (247)
33 2ihy_A ABC transporter, ATP-bi 99.6 5.5E-17 1.9E-21 154.4 -4.2 170 16-205 39-246 (279)
34 2ixe_A Antigen peptide transpo 99.5 4.2E-16 1.4E-20 147.7 -0.0 170 16-205 37-239 (271)
35 2pjz_A Hypothetical protein ST 99.5 8.8E-17 3E-21 151.7 -5.0 165 15-205 22-209 (263)
36 1mv5_A LMRA, multidrug resista 99.5 2.1E-16 7.2E-21 147.4 -2.6 169 15-205 19-220 (243)
37 2nq2_C Hypothetical ABC transp 99.5 2.5E-15 8.5E-20 141.0 2.2 164 16-205 23-211 (253)
38 2ghi_A Transport protein; mult 99.5 1.9E-15 6.6E-20 142.3 -0.6 164 15-205 37-236 (260)
39 3b5x_A Lipid A export ATP-bind 99.5 5.6E-15 1.9E-19 154.4 2.8 167 15-206 360-562 (582)
40 2d2e_A SUFC protein; ABC-ATPas 99.5 2.2E-15 7.6E-20 141.1 -2.3 172 16-205 21-227 (250)
41 3qf4_B Uncharacterized ABC tra 99.5 1.2E-14 4.2E-19 152.2 3.0 170 15-206 372-573 (598)
42 2zu0_C Probable ATP-dependent 99.4 2.7E-15 9.1E-20 141.9 -3.0 174 16-207 38-250 (267)
43 2yl4_A ATP-binding cassette SU 99.4 8.1E-15 2.8E-19 153.5 0.2 169 16-207 362-566 (595)
44 3qf4_A ABC transporter, ATP-bi 99.4 1.4E-14 4.9E-19 151.4 1.8 166 15-206 360-561 (587)
45 2pze_A Cystic fibrosis transme 99.4 2.1E-14 7.2E-19 132.7 2.5 163 15-205 25-212 (229)
46 1sgw_A Putative ABC transporte 99.4 6.8E-14 2.3E-18 127.9 5.7 157 16-191 27-203 (214)
47 3b60_A Lipid A export ATP-bind 99.4 8.6E-15 2.9E-19 153.0 -1.3 165 16-205 361-561 (582)
48 2cbz_A Multidrug resistance-as 99.4 2.9E-14 1E-18 132.4 2.4 164 15-205 22-211 (237)
49 4a82_A Cystic fibrosis transme 99.4 1.4E-14 4.7E-19 151.3 -0.9 165 16-206 359-559 (578)
50 3gd7_A Fusion complex of cysti 99.4 4E-14 1.4E-18 140.5 0.8 167 15-206 38-237 (390)
51 2bbs_A Cystic fibrosis transme 99.4 4.6E-14 1.6E-18 134.9 0.4 162 16-206 56-242 (290)
52 1tq4_A IIGP1, interferon-induc 99.4 7.2E-14 2.5E-18 139.6 1.2 156 26-202 71-258 (413)
53 3ozx_A RNAse L inhibitor; ATP 99.4 8E-14 2.7E-18 144.0 0.5 155 20-198 290-462 (538)
54 1lnz_A SPO0B-associated GTP-bi 99.3 8.9E-13 3E-17 128.8 4.6 89 25-129 159-247 (342)
55 1yqt_A RNAse L inhibitor; ATP- 99.3 1.7E-13 5.9E-18 141.7 -1.7 161 21-206 309-488 (538)
56 4f4c_A Multidrug resistance pr 99.3 3.3E-13 1.1E-17 152.8 0.4 167 15-207 1096-1300(1321)
57 3bk7_A ABC transporter ATP-bin 99.3 1.6E-13 5.5E-18 143.6 -2.3 161 21-206 379-558 (607)
58 3iev_A GTP-binding protein ERA 99.3 1.1E-12 3.8E-17 126.3 2.3 189 24-236 10-228 (308)
59 3g5u_A MCG1178, multidrug resi 99.3 6.8E-13 2.3E-17 149.8 0.8 168 15-206 1050-1253(1284)
60 3g5u_A MCG1178, multidrug resi 99.2 9.3E-13 3.2E-17 148.7 1.4 170 15-206 407-608 (1284)
61 3ozx_A RNAse L inhibitor; ATP 99.2 1.5E-12 5.1E-17 134.5 2.8 162 18-200 19-215 (538)
62 3j16_B RLI1P; ribosome recycli 99.2 1.2E-12 4.1E-17 136.9 1.6 77 123-207 476-555 (608)
63 3j16_B RLI1P; ribosome recycli 99.2 2.8E-12 9.6E-17 134.1 1.6 70 123-201 230-300 (608)
64 4f4c_A Multidrug resistance pr 99.2 4.4E-12 1.5E-16 143.6 1.5 165 15-207 435-637 (1321)
65 1yqt_A RNAse L inhibitor; ATP- 99.1 9.9E-12 3.4E-16 128.5 3.0 67 123-198 167-234 (538)
66 3bk7_A ABC transporter ATP-bin 99.1 9.8E-12 3.4E-16 130.1 1.9 155 20-198 113-304 (607)
67 1wf3_A GTP-binding protein; GT 99.1 1.4E-11 4.9E-16 118.2 1.5 188 25-236 8-220 (301)
68 1ega_A Protein (GTP-binding pr 99.1 1.3E-11 4.5E-16 118.4 0.5 186 24-234 8-219 (301)
69 2iw3_A Elongation factor 3A; a 99.1 1.2E-11 4.1E-16 134.6 -0.7 44 16-70 691-734 (986)
70 3i8s_A Ferrous iron transport 99.1 1.8E-10 6E-15 109.0 7.3 61 25-102 4-64 (274)
71 2qtf_A Protein HFLX, GTP-bindi 99.0 9.3E-11 3.2E-15 115.4 3.5 88 22-128 176-267 (364)
72 3sop_A Neuronal-specific septi 99.0 3.7E-10 1.3E-14 106.6 6.7 68 25-103 3-75 (270)
73 2gj8_A MNME, tRNA modification 99.0 2.5E-10 8.4E-15 99.8 4.9 90 23-129 3-94 (172)
74 3ux8_A Excinuclease ABC, A sub 98.9 4.9E-10 1.7E-14 118.8 4.9 74 123-206 211-293 (670)
75 3t5d_A Septin-7; GTP-binding p 98.9 2.3E-09 8E-14 101.0 9.0 64 25-101 9-78 (274)
76 3lxw_A GTPase IMAP family memb 98.9 6.9E-10 2.4E-14 103.2 4.6 61 24-101 21-83 (247)
77 2npi_A Protein CLP1; CLP1-PCF1 98.9 1.8E-10 6.2E-15 116.7 0.3 42 18-70 132-175 (460)
78 3lxx_A GTPase IMAP family memb 98.9 9.9E-10 3.4E-14 101.2 4.7 62 24-102 29-92 (239)
79 4dhe_A Probable GTP-binding pr 98.9 9.7E-10 3.3E-14 99.4 4.5 62 24-101 29-92 (223)
80 1xzp_A Probable tRNA modificat 98.9 5.6E-10 1.9E-14 113.7 3.2 91 22-129 241-334 (482)
81 2iw3_A Elongation factor 3A; a 98.9 1.1E-10 3.7E-15 127.2 -2.6 72 123-206 557-630 (986)
82 3iby_A Ferrous iron transport 98.9 3.4E-10 1.2E-14 106.0 0.6 60 26-102 3-62 (256)
83 3oes_A GTPase rhebl1; small GT 98.8 1.2E-08 4.2E-13 90.8 10.8 95 11-128 10-105 (201)
84 3b1v_A Ferrous iron uptake tra 98.8 1.3E-09 4.6E-14 102.9 3.1 59 25-101 4-62 (272)
85 3tw8_B RAS-related protein RAB 98.8 1.8E-08 6.2E-13 87.2 9.9 82 25-128 10-91 (181)
86 3tkl_A RAS-related protein RAB 98.8 1.6E-08 5.5E-13 89.0 9.6 82 25-128 17-98 (196)
87 1mky_A Probable GTP-binding pr 98.8 1.8E-09 6.1E-14 108.8 3.6 87 26-129 3-92 (439)
88 3clv_A RAB5 protein, putative; 98.8 3.9E-08 1.4E-12 86.5 10.8 47 24-70 7-53 (208)
89 3q85_A GTP-binding protein REM 98.8 3.3E-08 1.1E-12 84.7 10.0 61 25-100 3-63 (169)
90 1u8z_A RAS-related protein RAL 98.8 6.4E-08 2.2E-12 82.4 11.7 81 25-128 5-85 (168)
91 3t5g_A GTP-binding protein RHE 98.8 5.7E-08 2E-12 84.4 11.6 61 25-101 7-67 (181)
92 2bov_A RAla, RAS-related prote 98.8 6E-08 2.1E-12 86.0 11.9 60 24-99 14-73 (206)
93 1z2a_A RAS-related protein RAB 98.8 4.5E-08 1.5E-12 83.6 10.6 82 25-128 6-87 (168)
94 4dsu_A GTPase KRAS, isoform 2B 98.7 5.3E-08 1.8E-12 84.9 11.2 81 25-128 5-85 (189)
95 3hvz_A Uncharacterized protein 98.7 7.8E-09 2.7E-13 78.6 5.0 61 304-386 7-67 (78)
96 1mky_A Probable GTP-binding pr 98.7 4.5E-09 1.5E-13 105.9 4.7 60 24-100 180-240 (439)
97 1wms_A RAB-9, RAB9, RAS-relate 98.7 2.4E-08 8.3E-13 86.3 8.7 60 25-99 8-67 (177)
98 1z08_A RAS-related protein RAB 98.7 2.6E-08 8.9E-13 85.4 8.8 61 24-99 6-66 (170)
99 2wji_A Ferrous iron transport 98.7 1.4E-08 4.9E-13 87.6 7.2 60 25-101 4-63 (165)
100 3pqc_A Probable GTP-binding pr 98.7 7.7E-09 2.6E-13 90.8 5.4 57 24-100 23-80 (195)
101 2a9k_A RAS-related protein RAL 98.7 8.4E-08 2.9E-12 83.4 11.9 82 24-128 18-99 (187)
102 4gp7_A Metallophosphoesterase; 98.7 1E-09 3.5E-14 96.2 -0.6 28 18-45 3-30 (171)
103 2pt7_A CAG-ALFA; ATPase, prote 98.7 6.3E-09 2.1E-13 101.0 4.7 43 19-72 166-208 (330)
104 1kao_A RAP2A; GTP-binding prot 98.7 2.1E-07 7.2E-12 79.0 13.4 59 25-99 4-62 (167)
105 2o52_A RAS-related protein RAB 98.7 2.5E-08 8.5E-13 88.9 7.7 85 22-128 23-107 (200)
106 2gf9_A RAS-related protein RAB 98.7 5.1E-08 1.7E-12 85.7 9.6 83 24-128 22-104 (189)
107 1ky3_A GTP-binding protein YPT 98.7 3.8E-08 1.3E-12 85.2 8.5 61 25-99 9-69 (182)
108 2il1_A RAB12; G-protein, GDP, 98.7 4E-08 1.4E-12 86.9 8.5 83 24-128 26-108 (192)
109 3a1s_A Iron(II) transport prot 98.7 2.9E-09 1E-13 99.7 1.1 60 25-101 6-65 (258)
110 1c1y_A RAS-related protein RAP 98.7 1.3E-07 4.6E-12 80.5 11.3 81 25-128 4-84 (167)
111 1x3s_A RAS-related protein RAB 98.7 5.1E-08 1.7E-12 85.6 8.8 82 25-128 16-97 (195)
112 1znw_A Guanylate kinase, GMP k 98.7 1E-09 3.5E-14 99.1 -2.5 31 19-49 15-45 (207)
113 3b9q_A Chloroplast SRP recepto 98.7 2.7E-08 9.1E-13 95.4 7.3 112 16-151 92-237 (302)
114 3k53_A Ferrous iron transport 98.7 3.5E-09 1.2E-13 99.6 1.1 60 25-101 4-63 (271)
115 3cbq_A GTP-binding protein REM 98.7 3.8E-08 1.3E-12 87.6 7.5 61 24-99 23-83 (195)
116 3bc1_A RAS-related protein RAB 98.6 8.8E-08 3E-12 83.7 9.6 25 25-49 12-36 (195)
117 1htw_A HI0065; nucleotide-bind 98.6 7.6E-09 2.6E-13 89.8 2.6 44 18-73 27-70 (158)
118 2fn4_A P23, RAS-related protei 98.6 1.5E-07 5.2E-12 81.2 10.9 81 25-128 10-90 (181)
119 3gee_A MNME, tRNA modification 98.6 4.4E-09 1.5E-13 107.0 1.1 92 21-129 230-323 (476)
120 2dyk_A GTP-binding protein; GT 98.6 1.2E-08 4.2E-13 86.7 3.6 60 25-101 2-62 (161)
121 3ux8_A Excinuclease ABC, A sub 98.6 5.4E-09 1.9E-13 110.8 1.5 74 123-206 552-635 (670)
122 2og2_A Putative signal recogni 98.6 4.3E-08 1.5E-12 96.0 7.8 113 16-152 149-295 (359)
123 3ihw_A Centg3; RAS, centaurin, 98.6 1.6E-07 5.4E-12 82.7 10.5 76 24-128 20-95 (184)
124 2atv_A RERG, RAS-like estrogen 98.6 2.4E-07 8.2E-12 81.9 11.7 81 24-128 28-108 (196)
125 2hjg_A GTP-binding protein ENG 98.6 4.4E-09 1.5E-13 105.8 0.4 88 25-129 4-93 (436)
126 2iwr_A Centaurin gamma 1; ANK 98.6 1.3E-07 4.5E-12 81.9 9.6 75 25-128 8-82 (178)
127 3q72_A GTP-binding protein RAD 98.6 1.2E-07 4.1E-12 81.0 8.9 58 25-100 3-61 (166)
128 2f7s_A C25KG, RAS-related prot 98.6 2.1E-08 7.3E-13 90.2 4.4 36 14-49 15-50 (217)
129 2i3b_A HCR-ntpase, human cance 98.6 3.5E-09 1.2E-13 94.6 -1.1 37 24-73 1-37 (189)
130 2e87_A Hypothetical protein PH 98.6 5.1E-08 1.8E-12 95.4 6.5 63 22-101 165-227 (357)
131 2f9l_A RAB11B, member RAS onco 98.6 3E-08 1E-12 88.2 4.3 60 25-99 6-65 (199)
132 2wjg_A FEOB, ferrous iron tran 98.6 3.7E-08 1.3E-12 86.2 4.7 60 25-101 8-67 (188)
133 3kkq_A RAS-related protein M-R 98.6 2E-07 6.9E-12 81.1 9.4 82 24-128 18-99 (183)
134 2eyu_A Twitching motility prot 98.6 1.5E-07 5.2E-12 88.2 9.1 42 21-73 22-64 (261)
135 2ce2_X GTPase HRAS; signaling 98.6 5.3E-07 1.8E-11 76.3 11.7 59 25-99 4-62 (166)
136 3dz8_A RAS-related protein RAB 98.6 4.6E-08 1.6E-12 86.2 5.0 63 21-98 20-82 (191)
137 2xtp_A GTPase IMAP family memb 98.6 5.7E-08 2E-12 90.3 5.8 62 24-102 22-85 (260)
138 3reg_A RHO-like small GTPase; 98.5 2E-07 6.7E-12 82.2 8.9 60 24-99 23-82 (194)
139 2nzj_A GTP-binding protein REM 98.5 2.8E-07 9.5E-12 79.2 9.4 59 25-100 5-64 (175)
140 2lkc_A Translation initiation 98.5 4.4E-08 1.5E-12 84.7 4.2 62 22-100 6-67 (178)
141 4dcu_A GTP-binding protein ENG 98.5 1.1E-08 3.7E-13 103.6 0.0 88 25-129 24-113 (456)
142 3con_A GTPase NRAS; structural 98.5 3E-07 1E-11 80.6 9.3 59 25-99 22-80 (190)
143 3geh_A MNME, tRNA modification 98.5 8.5E-09 2.9E-13 104.5 -1.0 92 21-129 221-314 (462)
144 3def_A T7I23.11 protein; chlor 98.5 8.8E-08 3E-12 89.5 5.6 62 24-102 36-98 (262)
145 2ehv_A Hypothetical protein PH 98.5 7.4E-08 2.5E-12 88.4 5.0 28 19-46 25-52 (251)
146 3ec1_A YQEH GTPase; atnos1, at 98.5 2.1E-08 7.2E-13 98.8 1.2 60 23-102 161-226 (369)
147 2qnr_A Septin-2, protein NEDD5 98.5 1.4E-07 4.8E-12 90.3 6.9 65 25-100 19-88 (301)
148 1oix_A RAS-related protein RAB 98.5 1.4E-07 4.8E-12 83.5 6.3 61 25-100 30-90 (191)
149 1puj_A YLQF, conserved hypothe 98.5 9E-08 3.1E-12 90.8 5.2 60 22-101 118-178 (282)
150 2hjg_A GTP-binding protein ENG 98.5 6E-08 2E-12 97.5 3.8 89 24-129 175-268 (436)
151 2qu8_A Putative nucleolar GTP- 98.5 7.5E-08 2.6E-12 87.7 3.7 62 23-101 28-89 (228)
152 3c5c_A RAS-like protein 12; GD 98.4 1.4E-06 4.9E-11 76.5 11.4 61 24-100 21-81 (187)
153 1g16_A RAS-related protein SEC 98.4 1.1E-07 3.9E-12 81.2 4.1 82 25-128 4-85 (170)
154 1ye8_A Protein THEP1, hypothet 98.4 2.7E-07 9.1E-12 81.5 6.2 24 25-48 1-24 (178)
155 2a5j_A RAS-related protein RAB 98.4 1.3E-07 4.6E-12 83.2 4.3 85 22-128 19-103 (191)
156 2qm8_A GTPase/ATPase; G protei 98.4 1.1E-07 3.9E-12 92.4 3.8 45 17-72 48-92 (337)
157 2y8e_A RAB-protein 6, GH09086P 98.4 1.8E-07 6.2E-12 80.6 4.7 82 25-128 15-96 (179)
158 2yc2_C IFT27, small RAB-relate 98.4 1.8E-07 6E-12 83.0 4.5 63 24-99 20-84 (208)
159 3cph_A RAS-related protein SEC 98.4 2.1E-07 7.2E-12 83.0 4.9 85 22-128 18-102 (213)
160 2vf7_A UVRA2, excinuclease ABC 98.4 2.6E-08 8.7E-13 107.4 -1.6 73 123-205 739-821 (842)
161 1h65_A Chloroplast outer envel 98.4 2.7E-07 9.2E-12 86.5 5.6 61 24-101 39-100 (270)
162 1vg8_A RAS-related protein RAB 98.4 2.6E-07 8.9E-12 82.0 5.1 83 24-128 8-90 (207)
163 1ek0_A Protein (GTP-binding pr 98.4 2.6E-07 8.8E-12 78.8 4.9 82 25-128 4-85 (170)
164 3r7w_A Gtpase1, GTP-binding pr 98.4 1.4E-07 4.7E-12 90.5 3.4 87 24-128 3-90 (307)
165 2bcg_Y Protein YP2, GTP-bindin 98.4 2.5E-07 8.6E-12 82.3 4.9 82 25-128 9-90 (206)
166 3thx_A DNA mismatch repair pro 98.4 1.5E-07 5.2E-12 102.6 4.0 139 19-203 657-805 (934)
167 3jvv_A Twitching mobility prot 98.4 2.8E-07 9.6E-12 90.2 5.5 27 21-47 120-146 (356)
168 4dcu_A GTP-binding protein ENG 98.4 2.6E-07 9E-12 93.3 5.4 89 23-128 194-287 (456)
169 1rj9_A FTSY, signal recognitio 98.3 8.3E-07 2.8E-11 85.0 8.0 40 23-73 101-140 (304)
170 4aby_A DNA repair protein RECN 98.3 1.3E-07 4.3E-12 94.1 2.4 30 18-48 55-84 (415)
171 3t1o_A Gliding protein MGLA; G 98.3 8.1E-07 2.8E-11 77.7 7.4 25 25-49 15-39 (198)
172 1z06_A RAS-related protein RAB 98.3 1.9E-07 6.6E-12 81.9 3.0 61 24-99 20-80 (189)
173 1pui_A ENGB, probable GTP-bind 98.3 2.4E-07 8.2E-12 82.6 3.4 30 19-48 21-50 (210)
174 1jwy_B Dynamin A GTPase domain 98.3 3.4E-07 1.2E-11 87.4 4.6 25 25-49 25-49 (315)
175 3qq5_A Small GTP-binding prote 98.3 9.2E-08 3.1E-12 95.8 0.5 88 25-128 35-123 (423)
176 2bme_A RAB4A, RAS-related prot 98.3 2.7E-07 9.3E-12 80.3 3.4 60 25-99 11-70 (186)
177 2oil_A CATX-8, RAS-related pro 98.3 4.2E-07 1.4E-11 79.9 4.6 83 24-128 25-107 (193)
178 1zp6_A Hypothetical protein AT 98.3 5.2E-07 1.8E-11 79.4 4.9 41 20-73 5-45 (191)
179 3dpu_A RAB family protein; roc 98.3 1E-06 3.6E-11 90.7 7.9 26 23-48 40-65 (535)
180 2efe_B Small GTP-binding prote 98.3 5.5E-07 1.9E-11 77.9 4.9 82 25-128 13-94 (181)
181 2qag_C Septin-7; cell cycle, c 98.3 1.5E-06 5.2E-11 86.7 8.6 113 25-151 32-157 (418)
182 1svi_A GTP-binding protein YSX 98.3 1.5E-07 5.3E-12 82.7 0.9 57 24-100 23-81 (195)
183 1tf7_A KAIC; homohexamer, hexa 98.3 8.5E-07 2.9E-11 91.2 6.6 151 19-197 34-209 (525)
184 1z0f_A RAB14, member RAS oncog 98.3 8.1E-07 2.8E-11 76.4 5.3 83 24-128 15-97 (179)
185 1m2o_B GTP-binding protein SAR 98.3 6.2E-07 2.1E-11 79.1 4.7 79 23-128 22-100 (190)
186 1f6b_A SAR1; gtpases, N-termin 98.2 4.5E-07 1.5E-11 80.6 3.7 78 24-128 25-102 (198)
187 2h57_A ADP-ribosylation factor 98.2 6.4E-07 2.2E-11 78.6 4.6 81 23-128 20-100 (190)
188 2hxs_A RAB-26, RAS-related pro 98.2 2.7E-07 9.2E-12 79.7 2.1 84 24-128 6-89 (178)
189 1z0j_A RAB-22, RAS-related pro 98.2 5.2E-07 1.8E-11 77.0 3.9 26 24-49 6-31 (170)
190 2ew1_A RAS-related protein RAB 98.2 5.2E-07 1.8E-11 80.7 3.8 59 25-98 27-85 (201)
191 2p5s_A RAS and EF-hand domain 98.2 9E-07 3.1E-11 78.4 5.2 84 23-128 27-110 (199)
192 2g6b_A RAS-related protein RAB 98.2 5.8E-07 2E-11 77.7 3.8 83 24-128 10-93 (180)
193 3lnc_A Guanylate kinase, GMP k 98.2 2.6E-07 8.9E-12 84.4 1.5 56 11-66 14-71 (231)
194 2q3h_A RAS homolog gene family 98.2 6.3E-07 2.2E-11 79.3 3.8 85 21-128 17-101 (201)
195 1r2q_A RAS-related protein RAB 98.2 9.9E-07 3.4E-11 75.1 4.9 25 25-49 7-31 (170)
196 1t9h_A YLOQ, probable GTPase E 98.2 2.5E-07 8.5E-12 88.7 1.2 68 17-100 166-236 (307)
197 1z6g_A Guanylate kinase; struc 98.2 3.4E-07 1.2E-11 83.2 2.0 32 16-47 15-46 (218)
198 3cpj_B GTP-binding protein YPT 98.2 7.3E-07 2.5E-11 80.7 4.1 61 25-100 14-74 (223)
199 3h2y_A GTPase family protein; 98.2 6.4E-07 2.2E-11 88.1 3.9 59 23-101 159-224 (368)
200 1lvg_A Guanylate kinase, GMP k 98.2 3.6E-07 1.2E-11 81.8 1.9 49 22-72 2-52 (198)
201 1zbd_A Rabphilin-3A; G protein 98.2 9E-07 3.1E-11 78.4 4.4 60 25-99 9-68 (203)
202 2h17_A ADP-ribosylation factor 98.2 5.7E-07 1.9E-11 78.4 3.0 79 23-128 20-98 (181)
203 2obl_A ESCN; ATPase, hydrolase 98.2 6.9E-07 2.4E-11 87.1 4.0 44 19-73 66-109 (347)
204 1upt_A ARL1, ADP-ribosylation 98.2 1.1E-06 3.8E-11 75.1 4.6 80 22-128 5-84 (171)
205 2fu5_C RAS-related protein RAB 98.2 1.6E-07 5.5E-12 81.7 -1.0 82 25-128 9-90 (183)
206 1ksh_A ARF-like protein 2; sma 98.2 7.7E-07 2.6E-11 77.6 3.2 80 22-128 16-95 (186)
207 3b85_A Phosphate starvation-in 98.2 7.8E-08 2.7E-12 87.1 -3.3 33 15-47 13-45 (208)
208 3pih_A Uvrabc system protein A 98.2 1.4E-06 4.9E-11 94.6 5.7 74 123-206 814-897 (916)
209 3euj_A Chromosome partition pr 98.1 4.8E-07 1.6E-11 91.8 1.8 47 16-74 22-68 (483)
210 1s96_A Guanylate kinase, GMP k 98.1 7.5E-07 2.6E-11 81.2 2.9 35 14-48 6-40 (219)
211 2ygr_A Uvrabc system protein A 98.1 4.3E-07 1.5E-11 98.8 1.4 73 123-205 872-954 (993)
212 1mh1_A RAC1; GTP-binding, GTPa 98.1 1.3E-06 4.5E-11 75.7 4.2 60 25-100 6-65 (186)
213 1f5n_A Interferon-induced guan 98.1 2.4E-06 8.3E-11 88.7 6.8 67 25-102 39-105 (592)
214 2r6f_A Excinuclease ABC subuni 98.1 4.7E-07 1.6E-11 98.2 1.3 73 123-205 854-936 (972)
215 2fg5_A RAB-22B, RAS-related pr 98.1 1.8E-06 6.3E-11 76.0 5.0 80 25-128 24-105 (192)
216 1zj6_A ADP-ribosylation factor 98.1 1.1E-06 3.6E-11 77.0 3.3 79 23-128 15-93 (187)
217 1zd9_A ADP-ribosylation factor 98.1 8.4E-07 2.9E-11 77.9 2.6 81 22-128 20-100 (188)
218 2j0v_A RAC-like GTP-binding pr 98.1 2.3E-06 7.8E-11 76.4 5.2 82 24-128 9-90 (212)
219 1moz_A ARL1, ADP-ribosylation 98.1 6.5E-07 2.2E-11 77.7 1.6 80 22-128 16-95 (183)
220 1r8s_A ADP-ribosylation factor 98.1 1.8E-06 6.2E-11 73.3 4.2 54 26-99 2-55 (164)
221 2gza_A Type IV secretion syste 98.1 1.1E-06 3.8E-11 86.1 3.2 43 18-71 169-211 (361)
222 1fzq_A ADP-ribosylation factor 98.1 1E-06 3.5E-11 77.0 2.6 75 23-128 15-93 (181)
223 2atx_A Small GTP binding prote 98.1 2.2E-06 7.7E-11 75.2 4.7 60 25-100 19-78 (194)
224 2dpy_A FLII, flagellum-specifi 98.1 1.7E-06 5.9E-11 86.9 4.4 43 19-72 152-194 (438)
225 2cxx_A Probable GTP-binding pr 98.1 4.8E-06 1.6E-10 72.4 6.7 55 25-100 2-56 (190)
226 3t34_A Dynamin-related protein 98.1 5.1E-06 1.8E-10 81.1 7.5 37 26-62 36-72 (360)
227 3a00_A Guanylate kinase, GMP k 98.1 6.6E-07 2.3E-11 79.0 1.0 43 24-66 1-45 (186)
228 4bas_A ADP-ribosylation factor 98.1 1.6E-06 5.5E-11 76.2 3.5 80 24-128 17-96 (199)
229 2www_A Methylmalonic aciduria 98.1 5.8E-07 2E-11 87.8 0.4 26 22-47 72-97 (349)
230 3c8u_A Fructokinase; YP_612366 98.1 1.3E-06 4.5E-11 78.5 2.7 41 21-72 19-62 (208)
231 1u0l_A Probable GTPase ENGC; p 98.1 1.7E-06 5.8E-11 82.6 3.6 66 19-99 164-232 (301)
232 2gco_A H9, RHO-related GTP-bin 98.1 3.4E-06 1.2E-10 74.9 5.3 72 12-99 12-84 (201)
233 2hup_A RAS-related protein RAB 98.1 1.9E-06 6.4E-11 76.7 3.5 61 24-99 29-89 (201)
234 2erx_A GTP-binding protein DI- 98.0 4.1E-06 1.4E-10 71.3 5.5 26 24-49 3-28 (172)
235 2qag_B Septin-6, protein NEDD5 98.0 4.1E-06 1.4E-10 83.6 6.1 33 16-48 32-66 (427)
236 3l0i_B RAS-related protein RAB 98.0 1.7E-07 5.9E-12 83.1 -3.5 82 25-128 34-115 (199)
237 4gzl_A RAS-related C3 botulinu 98.0 2.3E-06 7.8E-11 76.3 3.8 84 22-128 28-111 (204)
238 3lvq_E ARF-GAP with SH3 domain 98.0 2.8E-06 9.6E-11 86.5 4.9 79 23-128 321-399 (497)
239 2fv8_A H6, RHO-related GTP-bin 98.0 2.2E-06 7.6E-11 76.4 3.6 61 24-100 25-85 (207)
240 2j69_A Bacterial dynamin-like 98.0 5.5E-07 1.9E-11 95.7 -0.4 36 22-57 67-103 (695)
241 3cnl_A YLQF, putative uncharac 98.0 3.6E-06 1.2E-10 78.8 5.2 57 25-101 100-157 (262)
242 3bwd_D RAC-like GTP-binding pr 98.0 1.5E-06 5.1E-11 75.2 2.2 25 24-48 8-32 (182)
243 3thx_B DNA mismatch repair pro 98.0 1.9E-05 6.5E-10 86.0 11.3 30 18-47 667-696 (918)
244 1m7b_A RND3/RHOE small GTP-bin 98.0 2.9E-06 9.8E-11 74.1 4.0 25 25-49 8-32 (184)
245 3tr0_A Guanylate kinase, GMP k 98.0 2.7E-06 9.3E-11 75.6 3.6 28 21-48 4-31 (205)
246 4dkx_A RAS-related protein RAB 98.0 1.6E-05 5.5E-10 72.1 8.9 23 25-47 14-36 (216)
247 4a74_A DNA repair and recombin 98.0 2.8E-06 9.5E-11 76.7 3.7 29 19-47 20-48 (231)
248 2j1l_A RHO-related GTP-binding 98.0 2.3E-06 7.8E-11 76.9 3.0 82 24-128 34-115 (214)
249 2ged_A SR-beta, signal recogni 98.0 3E-06 1E-10 74.2 3.7 27 22-48 46-72 (193)
250 1kgd_A CASK, peripheral plasma 98.0 3.7E-06 1.3E-10 73.8 4.2 43 23-65 4-48 (180)
251 1gwn_A RHO-related GTP-binding 98.0 3.6E-06 1.2E-10 75.3 4.0 61 24-100 28-88 (205)
252 2b6h_A ADP-ribosylation factor 98.0 1.7E-06 6E-11 76.3 1.7 79 23-128 28-106 (192)
253 2aka_B Dynamin-1; fusion prote 98.0 5.5E-06 1.9E-10 78.1 5.2 26 24-49 26-51 (299)
254 2rcn_A Probable GTPase ENGC; Y 98.0 4E-06 1.4E-10 81.9 4.3 63 22-100 213-280 (358)
255 2yhs_A FTSY, cell division pro 98.0 2.4E-06 8.1E-11 86.7 2.6 47 15-72 284-330 (503)
256 2yv5_A YJEQ protein; hydrolase 98.0 2.4E-06 8.1E-11 81.7 2.5 68 16-99 157-227 (302)
257 3q3j_B RHO-related GTP-binding 98.0 4.1E-06 1.4E-10 75.4 3.9 84 22-128 25-108 (214)
258 3szr_A Interferon-induced GTP- 98.0 6.1E-06 2.1E-10 86.3 5.7 37 26-73 47-84 (608)
259 3izq_1 HBS1P, elongation facto 98.0 3.8E-06 1.3E-10 87.9 4.1 83 22-128 165-278 (611)
260 1sq5_A Pantothenate kinase; P- 97.9 2.9E-06 9.8E-11 81.3 2.9 37 21-68 77-115 (308)
261 3ney_A 55 kDa erythrocyte memb 97.9 4.2E-06 1.4E-10 75.0 3.7 48 23-72 18-67 (197)
262 2x77_A ADP-ribosylation factor 97.9 2.5E-06 8.5E-11 74.6 2.2 79 23-128 21-99 (189)
263 3th5_A RAS-related C3 botulinu 97.2 1.2E-06 4.1E-11 77.9 0.0 85 22-129 28-112 (204)
264 2v9p_A Replication protein E1; 97.9 3.6E-06 1.2E-10 80.5 3.2 31 17-47 119-149 (305)
265 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.2E-05 4.1E-10 72.4 6.4 29 19-47 18-46 (235)
266 2oap_1 GSPE-2, type II secreti 97.9 3.7E-06 1.3E-10 86.1 3.1 41 20-71 256-296 (511)
267 2zej_A Dardarin, leucine-rich 97.9 4.3E-06 1.5E-10 73.1 3.0 24 25-48 3-26 (184)
268 2o8b_B DNA mismatch repair pro 97.9 3.2E-06 1.1E-10 93.2 2.7 136 24-201 789-930 (1022)
269 2gf0_A GTP-binding protein DI- 97.9 1E-05 3.5E-10 71.0 5.4 26 24-49 8-33 (199)
270 3e70_C DPA, signal recognition 97.9 2.3E-06 7.8E-11 82.8 0.9 41 21-72 126-166 (328)
271 2qpt_A EH domain-containing pr 97.9 8.6E-06 3E-10 84.2 5.3 104 23-129 64-199 (550)
272 1wb9_A DNA mismatch repair pro 97.9 1.4E-06 4.6E-11 93.8 -1.1 26 22-47 605-630 (800)
273 1pzn_A RAD51, DNA repair and r 97.9 7.8E-06 2.7E-10 79.7 4.3 45 19-72 126-175 (349)
274 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 72.5 4.3 44 22-65 6-51 (208)
275 3aez_A Pantothenate kinase; tr 97.8 5E-06 1.7E-10 79.8 2.1 27 21-47 87-113 (312)
276 3llu_A RAS-related GTP-binding 97.8 1.1E-05 3.8E-10 71.2 4.1 83 24-128 20-105 (196)
277 2cjw_A GTP-binding protein GEM 97.8 1.5E-05 5.3E-10 70.3 5.0 60 25-99 7-67 (192)
278 2j41_A Guanylate kinase; GMP, 97.8 1.3E-05 4.3E-10 71.2 4.4 28 21-48 3-30 (207)
279 3izy_P Translation initiation 97.8 1.8E-06 6E-11 88.9 -1.5 83 23-128 3-85 (537)
280 3ec2_A DNA replication protein 97.8 3.9E-06 1.3E-10 73.3 0.8 28 20-47 34-61 (180)
281 2jeo_A Uridine-cytidine kinase 97.8 9.4E-06 3.2E-10 74.8 3.4 33 15-47 16-48 (245)
282 2p67_A LAO/AO transport system 97.8 3.6E-06 1.2E-10 81.8 0.5 29 19-47 51-79 (341)
283 4djt_A GTP-binding nuclear pro 97.8 4.5E-06 1.5E-10 74.8 1.1 25 24-48 11-35 (218)
284 2wkq_A NPH1-1, RAS-related C3 97.8 1.2E-05 4.1E-10 76.6 4.1 85 21-128 152-236 (332)
285 2kjq_A DNAA-related protein; s 97.8 1.2E-05 4E-10 68.6 3.6 25 23-47 35-59 (149)
286 3gj0_A GTP-binding nuclear pro 97.8 3.4E-06 1.2E-10 75.9 0.0 81 24-128 15-97 (221)
287 2g3y_A GTP-binding protein GEM 97.8 3.3E-05 1.1E-09 69.7 6.5 59 25-98 38-97 (211)
288 1p9r_A General secretion pathw 97.7 7.5E-06 2.6E-10 81.7 2.1 39 22-71 165-203 (418)
289 3o47_A ADP-ribosylation factor 97.7 6.9E-06 2.3E-10 79.4 1.7 79 23-128 164-242 (329)
290 1wb1_A Translation elongation 97.7 6.4E-06 2.2E-10 83.8 1.5 82 24-129 19-107 (482)
291 3asz_A Uridine kinase; cytidin 97.7 1.3E-05 4.4E-10 71.7 3.2 26 22-47 4-29 (211)
292 1lw7_A Transcriptional regulat 97.7 5.3E-06 1.8E-10 81.2 0.5 31 17-47 161-193 (365)
293 3j2k_7 ERF3, eukaryotic polype 97.7 1.7E-05 5.9E-10 79.6 4.3 25 23-47 16-40 (439)
294 2f1r_A Molybdopterin-guanine d 97.7 6.8E-06 2.3E-10 72.0 1.0 37 25-72 3-42 (171)
295 2ewv_A Twitching motility prot 97.7 8.2E-06 2.8E-10 80.2 1.5 39 21-70 133-172 (372)
296 3p26_A Elongation factor 1 alp 97.7 1.3E-05 4.3E-10 81.6 2.9 25 23-47 32-56 (483)
297 1ewq_A DNA mismatch repair pro 97.7 2.2E-05 7.6E-10 84.0 4.5 24 24-47 576-599 (765)
298 1nrj_B SR-beta, signal recogni 97.7 2.5E-05 8.5E-10 69.8 4.2 25 24-48 12-36 (218)
299 1qhl_A Protein (cell division 97.7 1.7E-06 5.9E-11 79.3 -3.8 38 25-73 28-65 (227)
300 2qag_A Septin-2, protein NEDD5 97.7 1.8E-05 6.3E-10 77.4 3.2 25 25-49 38-62 (361)
301 2bbw_A Adenylate kinase 4, AK4 97.6 2.2E-05 7.6E-10 72.2 3.3 37 23-70 26-65 (246)
302 2fh5_B SR-beta, signal recogni 97.6 9.5E-05 3.2E-09 65.8 7.2 59 24-99 7-65 (214)
303 2xex_A Elongation factor G; GT 97.6 2.1E-05 7.3E-10 83.4 3.3 81 25-129 11-109 (693)
304 3zvr_A Dynamin-1; hydrolase, D 97.6 5.7E-05 2E-09 80.5 6.6 39 25-63 52-90 (772)
305 2bdt_A BH3686; alpha-beta prot 97.6 2.1E-05 7.2E-10 69.1 2.8 23 24-46 2-24 (189)
306 2x2e_A Dynamin-1; nitration, h 97.6 6.4E-05 2.2E-09 73.2 6.4 38 25-62 32-69 (353)
307 3tr5_A RF-3, peptide chain rel 97.6 8.8E-06 3E-10 83.7 0.2 82 24-129 13-116 (528)
308 1e69_A Chromosome segregation 97.6 0.00014 4.8E-09 69.8 8.6 28 19-47 20-47 (322)
309 4e22_A Cytidylate kinase; P-lo 97.6 1.3E-05 4.4E-10 74.4 1.2 35 22-67 25-62 (252)
310 2vp4_A Deoxynucleoside kinase; 97.6 2.4E-05 8.3E-10 71.3 3.0 30 18-47 14-43 (230)
311 3mca_A HBS1, elongation factor 97.6 1.4E-05 4.9E-10 83.2 1.2 23 25-47 178-200 (592)
312 1cr0_A DNA primase/helicase; R 97.5 2.2E-05 7.4E-10 74.3 1.8 32 16-47 27-58 (296)
313 4eun_A Thermoresistant glucoki 97.5 4.2E-05 1.4E-09 68.0 3.5 26 22-47 27-52 (200)
314 1zo1_I IF2, translation initia 97.5 1.1E-05 3.8E-10 82.2 -0.9 81 24-128 4-84 (501)
315 1n0w_A DNA repair protein RAD5 97.5 7.5E-05 2.6E-09 67.7 4.5 29 19-47 19-47 (243)
316 2h5e_A Peptide chain release f 97.5 7.5E-05 2.6E-09 76.8 4.9 25 23-47 12-36 (529)
317 3sjy_A Translation initiation 97.5 2.3E-05 7.8E-10 77.8 0.7 25 24-48 8-32 (403)
318 1kag_A SKI, shikimate kinase I 97.4 5.7E-05 2E-09 65.0 2.9 25 23-47 3-27 (173)
319 2dy1_A Elongation factor G; tr 97.4 0.0001 3.5E-09 77.8 5.5 28 21-48 6-33 (665)
320 3q5d_A Atlastin-1; G protein, 97.4 0.00017 5.7E-09 72.4 6.6 71 25-101 68-153 (447)
321 1nij_A Hypothetical protein YJ 97.4 2.6E-05 8.9E-10 74.9 0.7 45 25-72 5-49 (318)
322 3p32_A Probable GTPase RV1496/ 97.4 0.00011 3.7E-09 71.6 5.1 25 23-47 78-102 (355)
323 2c78_A Elongation factor TU-A; 97.4 4E-05 1.4E-09 76.0 2.0 25 23-47 10-34 (405)
324 1rz3_A Hypothetical protein rb 97.4 3.4E-05 1.2E-09 68.8 1.3 27 21-47 19-45 (201)
325 3kta_A Chromosome segregation 97.4 7.4E-05 2.5E-09 65.0 3.3 30 17-47 20-49 (182)
326 2elf_A Protein translation elo 97.4 5.3E-05 1.8E-09 74.4 2.3 70 26-127 23-92 (370)
327 1dar_A EF-G, elongation factor 97.4 0.00015 5E-09 77.0 5.5 81 25-129 13-111 (691)
328 3uie_A Adenylyl-sulfate kinase 97.3 0.0001 3.5E-09 65.4 3.4 27 21-47 22-48 (200)
329 1knq_A Gluconate kinase; ALFA/ 97.3 0.00011 3.7E-09 63.5 3.3 25 23-47 7-31 (175)
330 2x8a_A Nuclear valosin-contain 97.3 0.00011 3.9E-09 68.9 3.5 26 20-47 42-67 (274)
331 1tf7_A KAIC; homohexamer, hexa 97.3 0.00012 4.2E-09 75.0 4.0 29 19-47 276-304 (525)
332 1zun_B Sulfate adenylate trans 97.2 0.00014 4.8E-09 72.8 3.5 24 25-48 25-48 (434)
333 2qt1_A Nicotinamide riboside k 97.2 0.0002 6.8E-09 63.7 3.9 29 19-47 16-44 (207)
334 1f60_A Elongation factor EEF1A 97.2 8E-05 2.7E-09 75.2 1.3 23 25-47 8-30 (458)
335 3cr8_A Sulfate adenylyltranfer 97.2 8.6E-05 2.9E-09 76.6 1.2 41 20-71 365-407 (552)
336 1kk1_A EIF2gamma; initiation o 97.1 0.00014 4.8E-09 72.2 2.4 95 25-129 11-117 (410)
337 2qor_A Guanylate kinase; phosp 97.1 0.00012 4.1E-09 65.2 1.5 46 20-65 8-55 (204)
338 3vaa_A Shikimate kinase, SK; s 97.1 0.00026 8.7E-09 62.8 3.5 35 13-47 14-48 (199)
339 2cvh_A DNA repair and recombin 97.1 0.00028 9.5E-09 62.9 3.7 28 19-46 15-42 (220)
340 1jny_A EF-1-alpha, elongation 97.1 6.7E-05 2.3E-09 75.2 -0.7 23 25-47 7-29 (435)
341 1cke_A CK, MSSA, protein (cyti 97.1 0.00029 9.9E-09 63.3 3.6 24 24-47 5-28 (227)
342 3tqc_A Pantothenate kinase; bi 97.0 0.00028 9.5E-09 67.9 3.1 24 24-47 92-115 (321)
343 1ex7_A Guanylate kinase; subst 97.0 0.00022 7.4E-09 63.2 2.1 45 27-73 4-50 (186)
344 1d2e_A Elongation factor TU (E 97.0 0.00012 4E-09 72.5 0.3 24 24-47 3-26 (397)
345 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.00035 1.2E-08 68.4 3.3 27 19-46 19-45 (365)
346 1jjv_A Dephospho-COA kinase; P 97.0 0.00043 1.5E-08 61.4 3.6 23 25-47 3-25 (206)
347 2ywe_A GTP-binding protein LEP 96.9 0.0004 1.4E-08 72.3 3.7 86 25-129 7-107 (600)
348 1r5b_A Eukaryotic peptide chai 96.9 0.00015 5.3E-09 73.2 0.4 22 25-46 44-65 (467)
349 1ixz_A ATP-dependent metallopr 96.9 0.00027 9.2E-09 65.0 2.0 25 21-47 48-72 (254)
350 1n0u_A EF-2, elongation factor 96.9 0.00029 1E-08 76.3 2.6 97 25-129 20-132 (842)
351 1nlf_A Regulatory protein REPA 96.9 0.00048 1.7E-08 64.4 3.6 34 14-47 20-53 (279)
352 1svm_A Large T antigen; AAA+ f 96.9 0.00048 1.6E-08 67.7 3.7 29 19-47 164-192 (377)
353 2rdo_7 EF-G, elongation factor 96.9 0.00072 2.5E-08 71.8 5.1 23 24-46 10-32 (704)
354 1vma_A Cell division protein F 96.9 0.00028 9.4E-09 67.4 1.6 41 20-71 100-140 (306)
355 1s0u_A EIF-2-gamma, translatio 96.8 0.00045 1.6E-08 68.4 3.1 25 24-48 8-32 (408)
356 2if2_A Dephospho-COA kinase; a 96.8 0.00052 1.8E-08 60.7 3.2 23 25-47 2-24 (204)
357 1iy2_A ATP-dependent metallopr 96.8 0.00036 1.2E-08 65.2 2.1 25 21-47 72-96 (278)
358 1g7s_A Translation initiation 96.8 0.00026 8.7E-09 73.8 1.0 24 25-48 6-29 (594)
359 2px0_A Flagellar biosynthesis 96.8 0.00035 1.2E-08 66.4 1.8 26 22-47 103-128 (296)
360 1w1w_A Structural maintenance 96.8 0.00059 2E-08 68.0 3.4 28 21-48 23-50 (430)
361 3cb4_D GTP-binding protein LEP 96.8 0.00046 1.6E-08 71.8 2.7 87 25-130 5-106 (599)
362 2pez_A Bifunctional 3'-phospho 96.8 0.00069 2.4E-08 58.7 3.3 25 23-47 4-28 (179)
363 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00076 2.6E-08 57.2 3.4 21 25-45 24-44 (149)
364 2o5v_A DNA replication and rep 96.7 0.00066 2.2E-08 66.3 3.3 31 16-47 19-49 (359)
365 1m7g_A Adenylylsulfate kinase; 96.7 0.00044 1.5E-08 61.8 1.5 29 19-47 20-48 (211)
366 3cm0_A Adenylate kinase; ATP-b 96.7 0.00081 2.8E-08 58.3 3.1 24 23-46 3-26 (186)
367 1zu4_A FTSY; GTPase, signal re 96.6 0.00064 2.2E-08 65.3 2.0 45 17-72 98-142 (320)
368 3t61_A Gluconokinase; PSI-biol 96.6 0.00096 3.3E-08 58.9 3.0 24 24-47 18-41 (202)
369 3lda_A DNA repair protein RAD5 96.6 0.0013 4.6E-08 65.0 4.2 27 19-45 173-199 (400)
370 2yvu_A Probable adenylyl-sulfa 96.5 0.0014 4.9E-08 57.0 3.6 27 21-47 10-36 (186)
371 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.4E-08 56.9 3.8 28 20-47 6-33 (184)
372 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4.1E-08 61.1 2.8 28 20-47 41-71 (250)
373 1in4_A RUVB, holliday junction 96.4 0.0014 4.7E-08 63.1 3.0 23 25-47 52-74 (334)
374 1odf_A YGR205W, hypothetical 3 96.4 0.0016 5.6E-08 61.5 3.4 26 22-47 29-54 (290)
375 3m6a_A ATP-dependent protease 96.4 0.0018 6.1E-08 66.7 3.9 37 23-70 107-143 (543)
376 3lw7_A Adenylate kinase relate 96.3 0.002 6.7E-08 54.7 3.3 20 25-44 2-21 (179)
377 2v54_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 56.0 4.0 25 23-47 3-27 (204)
378 2rhm_A Putative kinase; P-loop 96.3 0.0023 7.8E-08 55.7 3.7 26 22-47 3-28 (193)
379 4eaq_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 58.4 3.6 28 20-47 22-49 (229)
380 1ls1_A Signal recognition part 96.3 0.00091 3.1E-08 63.4 1.0 39 23-72 97-135 (295)
381 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.5E-08 54.5 3.3 23 25-47 2-24 (173)
382 2dhr_A FTSH; AAA+ protein, hex 96.3 0.018 6.1E-07 58.6 10.6 26 20-47 62-87 (499)
383 1sxj_E Activator 1 40 kDa subu 96.3 0.0012 4.1E-08 63.4 1.7 36 26-72 38-74 (354)
384 1kht_A Adenylate kinase; phosp 96.2 0.0025 8.7E-08 55.1 3.6 24 24-47 3-26 (192)
385 1ly1_A Polynucleotide kinase; 96.2 0.0026 8.7E-08 54.6 3.6 22 25-46 3-24 (181)
386 3qks_A DNA double-strand break 96.2 0.0024 8.1E-08 57.0 3.4 21 25-45 24-44 (203)
387 2dr3_A UPF0273 protein PH0284; 96.2 0.0025 8.4E-08 57.6 3.4 28 18-45 17-44 (247)
388 3qkt_A DNA double-strand break 96.2 0.0024 8.1E-08 61.6 3.5 21 25-45 24-44 (339)
389 1qhx_A CPT, protein (chloramph 96.2 0.003 1E-07 54.2 3.8 24 24-47 3-26 (178)
390 1q3t_A Cytidylate kinase; nucl 96.2 0.0027 9.2E-08 57.7 3.6 26 22-47 14-39 (236)
391 3avx_A Elongation factor TS, e 96.2 0.0014 4.8E-08 72.5 1.9 24 24-47 296-319 (1289)
392 1np6_A Molybdopterin-guanine d 96.2 0.0029 9.8E-08 55.2 3.5 24 24-47 6-29 (174)
393 2jaq_A Deoxyguanosine kinase; 96.1 0.0029 1E-07 55.4 3.4 23 25-47 1-23 (205)
394 1vht_A Dephospho-COA kinase; s 96.1 0.0033 1.1E-07 56.2 3.7 25 23-47 3-27 (218)
395 2wwf_A Thymidilate kinase, put 96.1 0.0037 1.3E-07 55.2 3.8 26 22-47 8-33 (212)
396 2plr_A DTMP kinase, probable t 96.0 0.0037 1.3E-07 55.1 3.6 24 24-47 4-27 (213)
397 2kmm_A Guanosine-3',5'-BIS(dip 96.0 0.0078 2.7E-07 44.2 4.8 55 316-389 11-65 (73)
398 2c95_A Adenylate kinase 1; tra 96.0 0.0037 1.3E-07 54.4 3.5 26 22-47 7-32 (196)
399 1nn5_A Similar to deoxythymidy 96.0 0.004 1.4E-07 55.0 3.8 26 22-47 7-32 (215)
400 1ukz_A Uridylate kinase; trans 95.9 0.0049 1.7E-07 54.2 3.9 26 22-47 13-38 (203)
401 1tev_A UMP-CMP kinase; ploop, 95.9 0.0043 1.5E-07 53.8 3.4 24 24-47 3-26 (196)
402 2wsm_A Hydrogenase expression/ 95.9 0.0037 1.3E-07 55.6 3.1 24 24-47 30-53 (221)
403 3fb4_A Adenylate kinase; psych 95.9 0.0043 1.5E-07 55.2 3.4 23 25-47 1-23 (216)
404 2bwj_A Adenylate kinase 5; pho 95.9 0.0028 9.7E-08 55.3 2.1 27 21-47 9-35 (199)
405 2cdn_A Adenylate kinase; phosp 95.9 0.0054 1.8E-07 54.0 3.8 25 23-47 19-43 (201)
406 1aky_A Adenylate kinase; ATP:A 95.9 0.0051 1.8E-07 55.0 3.8 25 23-47 3-27 (220)
407 3dl0_A Adenylate kinase; phosp 95.9 0.0046 1.6E-07 55.0 3.4 23 25-47 1-23 (216)
408 2p5t_B PEZT; postsegregational 95.8 0.0031 1E-07 58.1 2.1 27 21-47 29-55 (253)
409 3iij_A Coilin-interacting nucl 95.8 0.0051 1.8E-07 53.0 3.4 25 23-47 10-34 (180)
410 1uf9_A TT1252 protein; P-loop, 95.8 0.0056 1.9E-07 53.5 3.6 24 24-47 8-31 (203)
411 1zd8_A GTP:AMP phosphotransfer 95.8 0.0056 1.9E-07 55.1 3.5 25 23-47 6-30 (227)
412 3k1j_A LON protease, ATP-depen 95.7 0.005 1.7E-07 64.1 3.5 28 21-48 57-84 (604)
413 3trf_A Shikimate kinase, SK; a 95.7 0.0063 2.2E-07 52.6 3.6 24 24-47 5-28 (185)
414 2iyv_A Shikimate kinase, SK; t 95.7 0.0048 1.6E-07 53.4 2.7 24 24-47 2-25 (184)
415 3vqt_A RF-3, peptide chain rel 95.7 0.019 6.5E-07 59.1 7.6 82 25-130 32-135 (548)
416 1nks_A Adenylate kinase; therm 95.7 0.0057 2E-07 52.9 3.2 23 25-47 2-24 (194)
417 1qf9_A UMP/CMP kinase, protein 95.7 0.0065 2.2E-07 52.5 3.6 24 24-47 6-29 (194)
418 1gtv_A TMK, thymidylate kinase 95.7 0.003 1E-07 55.9 1.3 22 26-47 2-23 (214)
419 1via_A Shikimate kinase; struc 95.7 0.0053 1.8E-07 52.8 2.9 22 26-47 6-27 (175)
420 2z0h_A DTMP kinase, thymidylat 95.6 0.0063 2.2E-07 52.9 3.4 23 25-47 1-23 (197)
421 3r20_A Cytidylate kinase; stru 95.6 0.0068 2.3E-07 55.4 3.6 26 22-47 7-32 (233)
422 2pt5_A Shikimate kinase, SK; a 95.6 0.0069 2.4E-07 51.4 3.4 23 25-47 1-23 (168)
423 2pbr_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 52.5 3.4 23 25-47 1-23 (195)
424 2vli_A Antibiotic resistance p 95.5 0.0051 1.8E-07 52.9 2.4 25 23-47 4-28 (183)
425 3r7w_B Gtpase2, GTP-binding pr 95.5 0.013 4.5E-07 56.3 5.4 81 26-128 1-82 (331)
426 1e6c_A Shikimate kinase; phosp 95.5 0.007 2.4E-07 51.6 3.2 23 25-47 3-25 (173)
427 3tlx_A Adenylate kinase 2; str 95.5 0.008 2.7E-07 54.9 3.7 26 22-47 27-52 (243)
428 1zak_A Adenylate kinase; ATP:A 95.5 0.0068 2.3E-07 54.2 3.1 24 24-47 5-28 (222)
429 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0078 2.7E-07 55.6 3.6 24 23-46 3-26 (260)
430 2hf9_A Probable hydrogenase ni 95.4 0.0071 2.4E-07 53.9 3.0 25 23-47 37-61 (226)
431 3be4_A Adenylate kinase; malar 95.4 0.0079 2.7E-07 53.8 3.3 24 24-47 5-28 (217)
432 3c5h_A Glucocorticoid receptor 95.4 0.016 5.5E-07 53.2 5.4 24 24-47 19-51 (255)
433 1e4v_A Adenylate kinase; trans 95.4 0.0083 2.8E-07 53.4 3.3 23 25-47 1-23 (214)
434 1gvn_B Zeta; postsegregational 95.4 0.0078 2.7E-07 56.6 3.1 26 22-47 31-56 (287)
435 3sr0_A Adenylate kinase; phosp 95.3 0.0093 3.2E-07 53.4 3.4 23 25-47 1-23 (206)
436 3ice_A Transcription terminati 95.3 0.0091 3.1E-07 58.6 3.5 31 17-47 167-197 (422)
437 2xb4_A Adenylate kinase; ATP-b 95.3 0.0098 3.4E-07 53.5 3.4 23 25-47 1-23 (223)
438 2ze6_A Isopentenyl transferase 95.3 0.0088 3E-07 55.1 3.1 22 26-47 3-24 (253)
439 3ake_A Cytidylate kinase; CMP 95.3 0.01 3.6E-07 52.0 3.5 22 26-47 4-25 (208)
440 1xjc_A MOBB protein homolog; s 95.2 0.01 3.4E-07 51.5 3.1 23 25-47 5-27 (169)
441 1lv7_A FTSH; alpha/beta domain 95.1 0.0099 3.4E-07 54.4 2.9 23 25-47 46-68 (257)
442 2ga8_A Hypothetical 39.9 kDa p 95.1 0.011 3.7E-07 57.4 3.2 27 21-47 19-47 (359)
443 3v9p_A DTMP kinase, thymidylat 95.1 0.01 3.5E-07 54.0 2.8 30 18-47 19-48 (227)
444 1zuh_A Shikimate kinase; alpha 95.1 0.013 4.6E-07 49.7 3.4 24 24-47 7-30 (168)
445 3umf_A Adenylate kinase; rossm 95.0 0.015 5.1E-07 52.5 3.8 27 21-47 26-52 (217)
446 3hr8_A Protein RECA; alpha and 95.0 0.011 3.6E-07 57.6 3.0 29 19-47 56-84 (356)
447 1ak2_A Adenylate kinase isoenz 95.0 0.015 5.2E-07 52.5 3.9 26 22-47 14-39 (233)
448 2ffh_A Protein (FFH); SRP54, s 94.8 0.0079 2.7E-07 59.9 1.6 25 23-47 97-121 (425)
449 1j8m_F SRP54, signal recogniti 94.8 0.0047 1.6E-07 58.6 -0.1 24 24-47 98-121 (297)
450 1sxj_C Activator 1 40 kDa subu 94.8 0.01 3.5E-07 56.8 2.1 26 22-47 42-69 (340)
451 3cf0_A Transitional endoplasmi 94.7 0.018 6E-07 54.3 3.6 27 21-47 46-72 (301)
452 3auy_A DNA double-strand break 94.6 0.017 5.8E-07 56.2 3.3 21 25-45 26-46 (371)
453 3gmt_A Adenylate kinase; ssgci 94.6 0.02 6.7E-07 52.2 3.4 24 24-47 8-31 (230)
454 2f6r_A COA synthase, bifunctio 94.6 0.02 6.9E-07 53.5 3.6 24 23-46 74-97 (281)
455 2zr9_A Protein RECA, recombina 94.5 0.02 6.7E-07 55.5 3.4 29 19-47 56-84 (349)
456 3kl4_A SRP54, signal recogniti 94.5 0.022 7.4E-07 56.8 3.7 25 23-47 96-120 (433)
457 1ltq_A Polynucleotide kinase; 94.5 0.022 7.4E-07 53.3 3.6 22 25-46 3-24 (301)
458 2grj_A Dephospho-COA kinase; T 94.5 0.021 7.2E-07 50.4 3.3 24 24-47 12-35 (192)
459 1uj2_A Uridine-cytidine kinase 94.5 0.022 7.5E-07 52.1 3.5 23 24-46 22-44 (252)
460 4ad8_A DNA repair protein RECN 94.4 0.0099 3.4E-07 60.6 1.1 27 20-47 57-83 (517)
461 3bos_A Putative DNA replicatio 94.4 0.026 9E-07 50.2 3.8 25 23-47 51-75 (242)
462 1jbk_A CLPB protein; beta barr 94.4 0.028 9.7E-07 47.7 3.8 24 24-47 43-66 (195)
463 4ag6_A VIRB4 ATPase, type IV s 94.3 0.012 4.2E-07 57.6 1.4 25 23-47 34-58 (392)
464 3j25_A Tetracycline resistance 94.2 0.016 5.6E-07 60.7 2.4 90 26-129 4-101 (638)
465 1ypw_A Transitional endoplasmi 94.1 0.025 8.5E-07 60.9 3.4 28 20-47 234-261 (806)
466 2w58_A DNAI, primosome compone 94.0 0.03 1E-06 49.0 3.3 23 25-47 55-77 (202)
467 3b9p_A CG5977-PA, isoform A; A 94.0 0.031 1E-06 52.1 3.5 25 23-47 53-77 (297)
468 4edh_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 50.0 3.5 25 23-47 5-29 (213)
469 2qby_A CDC6 homolog 1, cell di 94.0 0.026 8.9E-07 54.1 3.0 25 23-47 44-68 (386)
470 1fnn_A CDC6P, cell division co 93.9 0.032 1.1E-06 53.7 3.6 22 26-47 46-67 (389)
471 2h92_A Cytidylate kinase; ross 93.8 0.031 1.1E-06 49.6 3.0 24 24-47 3-26 (219)
472 1sky_E F1-ATPase, F1-ATP synth 93.8 0.029 9.9E-07 56.4 3.1 27 21-47 148-174 (473)
473 3lv8_A DTMP kinase, thymidylat 93.8 0.039 1.3E-06 50.4 3.6 27 21-47 24-50 (236)
474 4b4t_J 26S protease regulatory 93.7 0.048 1.6E-06 53.8 4.4 24 24-47 182-205 (405)
475 2r6a_A DNAB helicase, replicat 93.7 0.039 1.3E-06 55.2 3.8 30 18-47 197-226 (454)
476 2ocp_A DGK, deoxyguanosine kin 93.6 0.04 1.4E-06 49.8 3.5 24 24-47 2-25 (241)
477 1v5w_A DMC1, meiotic recombina 93.6 0.043 1.5E-06 52.8 3.8 29 19-47 117-145 (343)
478 3h4m_A Proteasome-activating n 93.6 0.042 1.4E-06 50.7 3.6 26 22-47 49-74 (285)
479 2ce7_A Cell division protein F 93.6 0.032 1.1E-06 56.3 2.9 22 26-47 51-72 (476)
480 3llm_A ATP-dependent RNA helic 93.5 0.045 1.5E-06 49.4 3.6 27 20-46 72-98 (235)
481 4fcw_A Chaperone protein CLPB; 93.5 0.041 1.4E-06 51.4 3.4 23 25-47 48-70 (311)
482 3tmk_A Thymidylate kinase; pho 93.4 0.052 1.8E-06 48.8 3.8 26 22-47 3-28 (216)
483 2p65_A Hypothetical protein PF 93.4 0.04 1.4E-06 46.8 2.9 24 24-47 43-66 (187)
484 2j37_W Signal recognition part 93.4 0.041 1.4E-06 55.9 3.4 23 23-45 100-122 (504)
485 4tmk_A Protein (thymidylate ki 93.3 0.052 1.8E-06 48.7 3.7 24 24-47 3-26 (213)
486 3zvl_A Bifunctional polynucleo 93.3 0.046 1.6E-06 54.1 3.5 26 22-47 256-281 (416)
487 2ius_A DNA translocase FTSK; n 93.3 0.037 1.3E-06 56.3 2.8 34 13-46 156-189 (512)
488 1p5z_B DCK, deoxycytidine kina 93.2 0.028 9.7E-07 51.6 1.8 27 21-47 21-47 (263)
489 2v3c_C SRP54, signal recogniti 93.2 0.03 1E-06 55.9 1.9 24 24-47 99-122 (432)
490 1yrb_A ATP(GTP)binding protein 93.1 0.07 2.4E-06 48.5 4.2 23 23-45 13-35 (262)
491 1a7j_A Phosphoribulokinase; tr 93.0 0.028 9.7E-07 52.9 1.5 24 24-47 5-28 (290)
492 1njg_A DNA polymerase III subu 93.0 0.055 1.9E-06 47.6 3.3 23 25-47 46-68 (250)
493 2z43_A DNA repair and recombin 93.0 0.054 1.8E-06 51.6 3.4 29 19-47 102-130 (324)
494 1l8q_A Chromosomal replication 93.0 0.043 1.5E-06 51.9 2.7 24 24-47 37-60 (324)
495 3ld9_A DTMP kinase, thymidylat 92.9 0.064 2.2E-06 48.5 3.6 25 23-47 20-44 (223)
496 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.066 2.2E-06 48.6 3.7 25 23-47 38-62 (262)
497 1tue_A Replication protein E1; 92.9 0.051 1.7E-06 48.7 2.8 27 21-47 55-81 (212)
498 3dm5_A SRP54, signal recogniti 92.8 0.06 2E-06 53.8 3.5 25 23-47 99-123 (443)
499 3crm_A TRNA delta(2)-isopenten 92.7 0.068 2.3E-06 51.1 3.7 23 25-47 6-28 (323)
500 4b4t_K 26S protease regulatory 92.7 0.07 2.4E-06 53.0 3.9 25 23-47 205-229 (428)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3.5e-87 Score=665.87 Aligned_cols=384 Identities=51% Similarity=0.927 Sum_probs=346.6
Q ss_pred CCCccccCCCCCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhh
Q 016139 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQL 79 (394)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~ 79 (394)
|+|++ . .+..+.+++++.+|.++||+|+||||||||||+|+|... .++++||||+.|+.|.+.++|.+++.++.+
T Consensus 1 ~~~~~-~---~~~~~~~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~ 76 (392)
T 1ni3_A 1 MPPKK-Q---QEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 76 (392)
T ss_dssp --------------CCCCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH
T ss_pred CCCCc-c---CcchhhHhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh
Confidence 77753 1 234557899999999999999999999999999999887 679999999999999999999999999999
Q ss_pred ccCCCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHH
Q 016139 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (394)
Q Consensus 80 ~~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di 159 (394)
+.|++.++..+.++|+||+..+.+.+++++++|+..++.+|++++|+|++++.++.++.+..||.++++++++++..+|+
T Consensus 77 ~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 77 YKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp HCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHH
Confidence 99999888889999999999988888889999999999999999999999989999999899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccc----chhhHHHHHHHHHHHHHhcCC-CceecCCCChhHHHHHHhhhhhcccCEeeecccchh
Q 016139 160 EFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (394)
Q Consensus 160 ~~l~k~l~~~~~~~~~~~----~h~~~~~~~l~~ri~~~L~~g-~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~ 234 (394)
..+++.++.+.+....++ +|.+.+++++|+++..+|++| ++++.++|++++.+.++.+++++.||++|++|+.++
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~ 236 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecch
Confidence 999999988877522332 499999999999998799999 999889999999999999999999999999999997
Q ss_pred hhhhhcccChhhHHHHHHhhC-CCeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCCC
Q 016139 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (394)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~~~~-~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~~ 313 (394)
++....+++++++++++.+.. +.++|++||..|.+|++|+++++.+||+++|.+++|++|++++|++|+||+|||+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~ 316 (392)
T 1ni3_A 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED 316 (392)
T ss_dssp HHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS
T ss_pred hhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC
Confidence 764234788999999887642 3689999999999999999999999999999899999999999999999999999999
Q ss_pred CeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 314 e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
|+|||||++|+||+||||+|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 317 e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 317 EVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp EEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred cceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.4e-88 Score=669.27 Aligned_cols=392 Identities=62% Similarity=1.030 Sum_probs=303.4
Q ss_pred CCCccccCCCCCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhc
Q 016139 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (394)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~ 80 (394)
|+|++. .+.++.+.+++++.++.++||||+||||||||||+|+|....++++||||+.|+.|.+.+++.++.++++.+
T Consensus 1 ~~~~~~--~~~~~~~~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 1 MPPKKG--GDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -----------------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCcc--cccchhhHHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeecccc
Confidence 677531 101345678999999999999999999999999999999887799999999999999999999999999999
Q ss_pred cCCCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHH
Q 016139 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (394)
Q Consensus 81 ~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~ 160 (394)
.|.+.++..++++|+||+..+.+.+.++++.|+..++.+|++++|+|+++++++.++.+..+|.++++.++.|+.+++++
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~ 158 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEE 158 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHH
Confidence 99888888999999999999888888899999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-Ccee-cCCCChhHHHHHHhhhhhcccCEeeecccchhhhhh
Q 016139 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238 (394)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g-~~~~-~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~ 238 (394)
.++++++++.+...+++......+..+++++..+|++| ++++ ..+|+++++++++.+++++.||++|++|+.++++..
T Consensus 159 ~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~ 238 (396)
T 2ohf_A 159 MIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238 (396)
T ss_dssp HHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH
T ss_pred HHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc
Confidence 99998877665432222233445678899999999999 6665 467999999999989999999999999999888754
Q ss_pred hcccChhhHHHHHHhh-CCCeEEEechHhhHHhcCCChhHHHHHHHhccccchHHHHHHHhhcccCcEEeecCCCCCeee
Q 016139 239 KKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 317 (394)
Q Consensus 239 ~~~~~~~~i~~~~~~~-~~~~~v~~sa~~E~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~L~li~~fT~~~~e~ra 317 (394)
..+++++.+++++... ++.++|++||..|.+|++|+++++.+||+++|.+++|++|++++|++|+||+|||+||||+||
T Consensus 239 ~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~evra 318 (396)
T 2ohf_A 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRA 318 (396)
T ss_dssp TCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSSEEEE
T ss_pred cccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCCccee
Confidence 4577888998887653 357899999999999999999999999999998899999999999999999999999999999
Q ss_pred EEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEecCCCCCC
Q 016139 318 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK 394 (394)
Q Consensus 318 w~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~~~~~~~ 394 (394)
|||++|+||+||||+|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||++++||
T Consensus 319 wti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~~~~~~~ 395 (396)
T 2ohf_A 319 WTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKK 395 (396)
T ss_dssp EEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-------
T ss_pred EEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.2e-83 Score=631.63 Aligned_cols=362 Identities=41% Similarity=0.779 Sum_probs=321.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
++.+++|||.||||||||||+|++....+++|||||+.|+.|.+.+++.++.++++.+.|.+..+..++++|+||+.++.
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 36799999999999999999999988777999999999999999999999999999999998888889999999999887
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhH
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~ 182 (394)
+.+.+++++|+..++.+|++++|+|+++++++.++.+..||..+++.++.||.++|++.++++++++.+.. +++.+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~-k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRA-KGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh-hccchhHH
Confidence 77778889999999999999999999999999999989999999999999999999999999999887654 33224556
Q ss_pred HHHHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCCCeEEEe
Q 016139 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 262 (394)
Q Consensus 183 ~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~ 262 (394)
.+..++++++.+|++|++++..+|++++.+.++.+.+++.||++|++|+.|.++ ..+.+++.+++++... +.+++++
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~--~~n~~~~~v~~~~~~~-~~~~i~~ 236 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKE-GAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS--SSCHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc--cccHHHHHHHHHHHHc-CCCEEEe
Confidence 677889999999999999888889999999999999999999999999998765 2356888898887664 6789999
Q ss_pred chHhhHHhcCCChhHHHHHHHhccc-cchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhcc
Q 016139 263 SCALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGF 341 (394)
Q Consensus 263 sa~~E~~l~~l~~~~~~~~~~~~~~-~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gF 341 (394)
||+.|.+|.+|+++++.+|++++|+ +++|++|++++|++||||+|||+||+|+|||||++|+||+||||+|||||+|||
T Consensus 237 sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gF 316 (363)
T 1jal_A 237 CAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGF 316 (363)
T ss_dssp CHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHC
T ss_pred chHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhcc
Confidence 9999999999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 342 ICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 342 i~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
||||||+|+||++|||+++||++|++|+|||||+|||||||+|||||
T Consensus 317 i~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 317 IRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp CEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred EEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999997
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=4.9e-80 Score=610.95 Aligned_cols=361 Identities=45% Similarity=0.710 Sum_probs=319.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCC----ccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS----AVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~----~~~~~i~~~D~~gl~~ 100 (394)
.++||+|+||||||||||+|++..+.+++|||||+.|+.|.+.+++.++..++..+.+.+ ..+..++++|+||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 368999999999999999999987677999999999999999999999888888888876 4566799999999999
Q ss_pred cccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchh
Q 016139 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180 (394)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~ 180 (394)
+.+.+.+++++|+..++.+|++++|+|+++++++.++++..||..+++.++.|+.++|++.++++++++.+.. .+ .+.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~-~~-~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RA-DRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh-cc-chh
Confidence 8888888999999999999999999999999999999989999999999999999999999999999887654 22 256
Q ss_pred hHHHHHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhh-cccChhhHHHHHHhhCCCeE
Q 016139 181 LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRK-KNKFLPKIHAWVQEHGGEQI 259 (394)
Q Consensus 181 ~~~~~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 259 (394)
......+|++++.+|++|++++..+|++++.+.++.+.+++.||++|++|+.++++... ++.+++.+++++... +.++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~-g~~v 238 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE-GAEV 238 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHc-CCeE
Confidence 66778899999999999998877789988889999999999999999999998765321 256788888887665 6789
Q ss_pred EEechHhhHHhcCCChhHHHHHHHhccc-cchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCCCChhhhhccchhhhh
Q 016139 260 IPFSCALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (394)
Q Consensus 260 v~~sa~~E~~l~~l~~~~~~~~~~~~~~-~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~ 338 (394)
+++||+.|.+|.+|.++++.+|++++|+ +++|++|++++|++|+||+|||+||+|+|||||++|+||+||||+|||||+
T Consensus 239 v~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~ 318 (368)
T 2dby_A 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDME 318 (368)
T ss_dssp EEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHH
T ss_pred EEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHH
Confidence 9999999999999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEec
Q 016139 339 RGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 388 (394)
Q Consensus 339 ~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~ 388 (394)
|||||||||+|+||++|||+++||++|++|+|||||+|||||||+|||||
T Consensus 319 ~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 319 RGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp HSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred hhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=8e-51 Score=406.59 Aligned_cols=331 Identities=26% Similarity=0.389 Sum_probs=227.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEe----cCCcchhhhhhhccCC------CccccceEEEec
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN----IPDERFEWLCQLFKPK------SAVPAFLEIHDI 95 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~----v~g~~~~~l~~~~~~~------~~~~~~i~~~D~ 95 (394)
+++|+|.||||||||||+|++....++++||||+.|+.|.+. +++.++.. .+.|. .....++.++|+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~---~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGC---SPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCC---SCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhh---hcccccccccCCcceEEEEEEEC
Confidence 689999999999999999999886668999999999999753 44444322 22221 000135899999
Q ss_pred ccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCC--eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 016139 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (394)
Q Consensus 96 ~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~--vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~ 173 (394)
||+..+.+.+.+++++|+..++.+|++++|+|++...+ -.+.+ ..||..+++.++.|+.++|++.+++++.++.+..
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~-~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTD-YHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCS-CCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccC-CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99998777777788888889999999999999986421 11222 5699999999999999999999999998887543
Q ss_pred hcccchhhH-HH----------HHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhccc
Q 016139 174 KRSNDKQLK-IE----------HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNK 242 (394)
Q Consensus 174 ~~~~~h~~~-~~----------~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~ 242 (394)
..+. .... .+ ...+.+++..|..++.. ..|++++...+..+.+++.+|++|++|+.|.. . +.
T Consensus 158 ~~~~-~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~---~~ 230 (397)
T 1wxq_A 158 KLQK-IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S---DE 230 (397)
T ss_dssp TSSC-CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C---HH
T ss_pred hhcC-ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c---hH
Confidence 2221 1111 11 23456666777777663 47888888888888888899999999999853 1 23
Q ss_pred ChhhHHHHHHhhCCCeEEEechHhhHHhcCC---------------------ChhHHH-------HHHHhccccchHHHH
Q 016139 243 FLPKIHAWVQEHGGEQIIPFSCALERNLADM---------------------PPDEAA-------KYCEENKVQSALPKI 294 (394)
Q Consensus 243 ~~~~i~~~~~~~~~~~~v~~sa~~E~~l~~l---------------------~~~~~~-------~~~~~~~~~~~l~~l 294 (394)
+++.+.+.+... +.+++++||..|.++.+| +++++. +||+.+| +++++++
T Consensus 231 ~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g-~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKR-GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG-STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHT-TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS-SCSHHHH
T ss_pred HHHHHHHHHhhc-CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC-cchHHHH
Confidence 455665544332 568999999999999874 344443 5666777 8999999
Q ss_pred HH-HhhcccCcEEeecCC----------CCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhh
Q 016139 295 IK-TGFSAINLIYFFTAG----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKA 363 (394)
Q Consensus 295 i~-~~~~~L~li~~fT~~----------~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~ 363 (394)
|+ ++|++|+||+|||+| ++|++||++|+|+||+|+|+.|||||+++|++|+ +.
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~----------------~~ 372 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI----------------NA 372 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE----------------ET
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH----------------Hh
Confidence 95 669999999999987 3577999999999999999999999999999998 23
Q ss_pred cCcccccCCcceecCCCEEEEEE
Q 016139 364 AGKYKQEGKTYVVQDGDIIFFKF 386 (394)
Q Consensus 364 ~g~~~~~Gkdy~v~dgDii~~~f 386 (394)
.|+ +++|+||+|||||||+|..
T Consensus 373 ~~~-~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 373 RTK-RRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp TTC-SBCCTTCCCCTTEEEEEEE
T ss_pred cCC-EEcCCCccccCCCEEEEEe
Confidence 453 5789999999999999984
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-51 Score=401.90 Aligned_cols=291 Identities=18% Similarity=0.266 Sum_probs=207.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
..|||||.||||||||||+|||..+.+++|||||++|+.|.+.++|. +++++|+||+..+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~-----------------~i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA-----------------KIQMLDLPGIIDGAKD 135 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE-----------------EEEEEECGGGCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc-----------------EEEEEeCCCccCCchh
Confidence 48999999999999999999999988899999999999999999873 4899999999999988
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHH
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIE 184 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~ 184 (394)
+.+++++|++.++.+|++++|+|++ +|..+.+.+..||...++...++......+....+.
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g------- 196 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG------- 196 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC-------
T ss_pred hhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh-------
Confidence 8899999999999999999999885 688888888877655543211111000000000000
Q ss_pred HHHHHHHHHHhcCCCceecCCCChhHHHHHHhhhhhcccCEeeecccchhhhhhhcccChhhHHHHHHhhCCCeEEEech
Q 016139 185 HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264 (394)
Q Consensus 185 ~~l~~ri~~~L~~g~~~~~~~~~~~e~e~i~~~~~~~~kp~~~~~N~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~sa 264 (394)
++-........++++++..+....+++.+|++|.+|+.++++.. +...... ...+++.+++
T Consensus 197 ----------i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d--------~~~~~~~-~~~p~i~v~n 257 (376)
T 4a9a_A 197 ----------ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID--------VLEASSR-RYMPAIYVLN 257 (376)
T ss_dssp ----------EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH--------HHTTTTC-EEECEEEEEE
T ss_pred ----------hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH--------HHHHHHh-hccceEEEEe
Confidence 00001111234566666666666778888988888888765421 1110000 1235666665
Q ss_pred HhhHHhcCCChhHHHH------HHHhcc-ccchHHHHHHHhhcccCcEEeecCCCCCeeeEEecCC-----CChhhhhcc
Q 016139 265 ALERNLADMPPDEAAK------YCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ-----TKAPQAAGT 332 (394)
Q Consensus 265 ~~E~~l~~l~~~~~~~------~~~~~~-~~~~l~~li~~~~~~L~li~~fT~~~~e~raw~i~~g-----sta~~~A~~ 332 (394)
+.+. ++.++... |+..++ .+++|++|++++|++|+||+|||+||+|+||||+|.| +|+.|+|+.
T Consensus 258 Kid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ 333 (376)
T 4a9a_A 258 KIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQ 333 (376)
T ss_dssp CGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHH
T ss_pred cccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHH
Confidence 5432 11122111 112233 3789999999999999999999999999999997665 555567999
Q ss_pred chhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEE
Q 016139 333 IHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKF 386 (394)
Q Consensus 333 IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f 386 (394)
||+||.++|++|+||+ .+||++| |+|||||+|||||||+|.-
T Consensus 334 ih~d~~~~F~~a~v~G----------s~~K~~~--r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 334 IHKSLVDDFRNALVYG----------SSVKHQP--QYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp HCGGGGGGEEEEEEES----------TTSSSSS--EEECTTCBCCTTCEEEEEE
T ss_pred HHHHHHHhhhHhhhcC----------cccCCCC--CccCCCcEEcCCCEEEEEe
Confidence 9999999999999997 4678877 9999999999999999963
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-20 Score=142.17 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=71.7
Q ss_pred hhcccCcEEeecCCC----CCeeeEEe-cCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCC
Q 016139 298 GFSAINLIYFFTAGP----DEVKCWQI-RRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGK 372 (394)
Q Consensus 298 ~~~~L~li~~fT~~~----~e~raw~i-~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gk 372 (394)
.|+.|+||++||+.+ |...|.++ |+|+|+.|+|..||+||.+.|.+|.||+ .+||..| |++|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG----------~saK~~~--qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWG----------LSVKHNP--QKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBS----------TTSSSSS--EEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEec----------ccccCCC--EECCC
Confidence 589999999999653 45689999 9999999999999999999999999999 7888877 99999
Q ss_pred cceecCCCEEEEEEe
Q 016139 373 TYVVQDGDIIFFKFN 387 (394)
Q Consensus 373 dy~v~dgDii~~~f~ 387 (394)
||+|+|||||+|..+
T Consensus 73 dh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 73 DHTLEDEDVIQIVKK 87 (93)
T ss_dssp SCCCCSSEEECEEEC
T ss_pred CcEecCCCEEEEEeC
Confidence 999999999999865
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.68 E-value=4.2e-18 Score=161.04 Aligned_cols=173 Identities=16% Similarity=0.242 Sum_probs=112.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCC-cc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS-AV 86 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~-~~ 86 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|+++.... ..|.+|. ..
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCcc
Confidence 345667899999999999999999999999999 6799999999998764321 1456665 33
Q ss_pred ccceEEEecccccccccCCCCCch---hhhhHHHhhh--------------hHHhhhhcc-C------CCCeEEecCCCC
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLGN---SFLSHIRAVD--------------GIFHVLRAF-E------DPDIIHVDDSVD 142 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~~---~~l~~l~~~d--------------~il~vv~a~-~------~~~vl~ld~~~e 142 (394)
...+++.++..+............ ..++.+...+ --+.+++|+ . +|+++++| |
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD---E 173 (266)
T 4g1u_C 97 AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD---E 173 (266)
T ss_dssp CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC---C
T ss_pred CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---C
Confidence 344566665544322111100000 1111111100 015667777 5 99999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++++|+.....+...+..+.+ .-...+.. .+|+++.+..+||++ .+|++|+++..++.
T Consensus 174 Pts~LD~~~~~~i~~~l~~l~~---~~~~tvi~-vtHdl~~~~~~~d~v-~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 174 PTSALDLYHQQHTLRLLRQLTR---QEPLAVCC-VLHDLNLAALYADRI-MLLAQGKLVACGTP 232 (266)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHH---HSSEEEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred ccccCCHHHHHHHHHHHHHHHH---cCCCEEEE-EEcCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999987555444322211 10112212 249999999999999 89999999887653
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.67 E-value=1.3e-17 Score=163.47 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=116.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh----hhh-----hhccCCC-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----WLC-----QLFKPKS- 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~----~l~-----~~~~~~~- 84 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++. ... ..|.+|.
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence 345678899999999999999999999999999 6799999999998762 111 1456665
Q ss_pred ccccceEEEecccccccccCCC--C---CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCc
Q 016139 85 AVPAFLEIHDIAGLVRGAHEGQ--G---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~~~--~---l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
..+..+++.|+..+........ . .....++.++..+. -+.+++|+ .+|+++++| ||+
T Consensus 90 ~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD---EPt 166 (359)
T 3fvq_A 90 VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD---EPF 166 (359)
T ss_dssp CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STT
T ss_pred cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCc
Confidence 3455677777766542211100 0 00111222221111 16677887 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+.||+...+.+...+..+ ..+....+.. .+|++.++..+|||| .+|++|+++..++.
T Consensus 167 s~LD~~~r~~l~~~l~~~---~~~~g~tvi~-vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAA---LRANGKSAVF-VSHDREEALQYADRI-AVMKQGRILQTASP 223 (359)
T ss_dssp TTSCHHHHHHHHHHHHHH---HHHTTCEEEE-ECCCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHH---HHhCCCEEEE-EeCCHHHHHHHCCEE-EEEECCEEEEEeCH
Confidence 999998865544332222 2111222212 249999999999999 99999999887753
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.66 E-value=8.4e-18 Score=165.08 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=115.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh----------hhccCCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFKPKS 84 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~----------~~~~~~~ 84 (394)
......++.|+++||+||||||||||+++|+|+ ..|++|.|.++|+++..+. -.|.+|.
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~ 113 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH 113 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCC
Confidence 345677899999999999999999999999999 6799999999998764321 1466665
Q ss_pred -ccccceEEEecccccccccCCC-----CCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.....+++.|+..+........ ......++.+...+. -+.+++|+ .+|+++++| ||
T Consensus 114 ~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD---EP 190 (366)
T 3tui_C 114 FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD---QA 190 (366)
T ss_dssp CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE---ST
T ss_pred CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CC
Confidence 3444556666554431111000 000111222221111 16678888 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++.||+.....++..+..+.+ +....+.. .+|++..+..+||++ .+|++|+++..++.
T Consensus 191 Ts~LD~~~~~~i~~lL~~l~~---~~g~Tii~-vTHdl~~~~~~aDrv-~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 191 TSALDPATTRSILELLKDINR---RLGLTILL-ITHEMDVVKRICDCV-AVISNGELIEQDTV 248 (366)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH---HSCCEEEE-EESCHHHHHHHCSEE-EEEETTEEEECCBH
T ss_pred CccCCHHHHHHHHHHHHHHHH---hCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 999999987655544332221 11112212 249999999999999 99999999887653
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.64 E-value=5.3e-17 Score=151.20 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=113.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCC-cc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-AV 86 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~-~~ 86 (394)
.....++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . -.|.||. ..
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 44567889999999999999999999999999 679999999999765321 1 2467776 34
Q ss_pred ccceEEEecccccccccCCCC-C---chhhhhHHH-hhhh--------------HHhhhhcc-CCCCeEEecCCCCCcch
Q 016139 87 PAFLEIHDIAGLVRGAHEGQG-L---GNSFLSHIR-AVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~-l---~~~~l~~l~-~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ 146 (394)
+..+++.|+..+......... . ...+++.+. ..+. -+.+++|+ .+|+++++| ||+++
T Consensus 93 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~ 169 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPSLG 169 (240)
T ss_dssp CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTTTT
T ss_pred CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCccc
Confidence 445566666544321111110 0 111222221 1111 15677887 899999999 99999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 147 ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+|+...+.+...+..+. +-...+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 170 LD~~~~~~l~~~l~~~~----~~g~tvi~-vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 170 LAPILVSEVFEVIQKIN----QEGTTILL-VEQNALGALKVAHYG-YVLETGQIVLEGK 222 (240)
T ss_dssp CCHHHHHHHHHHHHHHH----HTTCCEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH----HCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99998766554433221 11112212 249999999999999 8899999876653
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.64 E-value=1.1e-17 Score=158.00 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=111.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh-------hhh--hhccCCC-c
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFKPKS-A 85 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~-------~l~--~~~~~~~-~ 85 (394)
.....++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++. .+. ..|.||. .
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~ 110 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCC
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCc
Confidence 45667899999999999999999999999999 6799999999997652 111 2466766 3
Q ss_pred cccceEEEecccccc-cccC-C----CCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCc
Q 016139 86 VPAFLEIHDIAGLVR-GAHE-G----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~-~~~~-~----~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
.+..+++.|...+.. .... . ......+++.+...+. -+.+++|+ .+|+++++| ||+
T Consensus 111 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD---EPt 187 (263)
T 2olj_A 111 LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD---EPT 187 (263)
T ss_dssp CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STT
T ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe---CCc
Confidence 344456666554321 0000 0 0000111111111111 15677777 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+++|+...+.+...+..+. +. ...+... +|++..+..+||++ .+|++|+++..++
T Consensus 188 s~LD~~~~~~~~~~l~~l~---~~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 242 (263)
T 2olj_A 188 SALDPEMVGEVLSVMKQLA---NE-GMTMVVV-THEMGFAREVGDRV-LFMDGGYIIEEGK 242 (263)
T ss_dssp TTSCHHHHHHHHHHHHHHH---HT-TCEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHH---hC-CCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999998766544432221 11 1222222 49999999999999 8899999887654
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.64 E-value=1.9e-17 Score=163.49 Aligned_cols=173 Identities=15% Similarity=0.154 Sum_probs=115.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-----hccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-----~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++..... .|.+|. ..+.
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 345677899999999999999999999999999 67999999999987654321 355665 3445
Q ss_pred ceEEEecccccccccCCC-----CCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+........ ......++.++..+. -+.+++|+ .+|+++++| ||++.||
T Consensus 89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD---EPts~LD 165 (381)
T 3rlf_A 89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNLD 165 (381)
T ss_dssp TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSC
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcCCC
Confidence 567777665532111000 000011111111111 15567776 799999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
....+.+...+..+.+ +....+.. .+|++.++..+||+| .+|++|+++..++.
T Consensus 166 ~~~~~~l~~~l~~l~~---~~g~tii~-vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 166 AALRVQMRIEISRLHK---RLGRTMIY-VTHDQVEAMTLADKI-VVLDAGRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHHHHHHH---HHCCEEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHHH---hCCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 9987655554333322 11222212 249999999999999 99999999877653
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.64 E-value=1.1e-17 Score=157.82 Aligned_cols=171 Identities=16% Similarity=0.240 Sum_probs=113.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------------------h
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------------L 76 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------------------l 76 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++.. .
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEccccccccccccccChhhHHHH
Confidence 345667899999999999999999999999999 67999999999976530 1
Q ss_pred h--hhccCCC-ccccceEEEecccccc-cccC-C----CCCchhhhhHHHhhhh---------------HHhhhhcc-CC
Q 016139 77 C--QLFKPKS-AVPAFLEIHDIAGLVR-GAHE-G----QGLGNSFLSHIRAVDG---------------IFHVLRAF-ED 131 (394)
Q Consensus 77 ~--~~~~~~~-~~~~~i~~~D~~gl~~-~~~~-~----~~l~~~~l~~l~~~d~---------------il~vv~a~-~~ 131 (394)
. ..|.||. ..+..+++.|...+.. .... . .......++.+...+. -+.+++|+ .+
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 1 2466766 3444556666554421 0000 0 0001112222221121 25677887 89
Q ss_pred CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+++++| ||++++|+...+.+...+..+.+ . ...+... +|++..+..+||++ .+|++|+++..++
T Consensus 172 p~lllLD---EPts~LD~~~~~~~~~~l~~l~~---~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 172 PDVLLFD---EPTSALDPELVGEVLRIMQQLAE---E-GKTMVVV-THEMGFARHVSSHV-IFLHQGKIEEEGD 236 (262)
T ss_dssp CSEEEEE---STTTTSCHHHHHHHHHHHHHHHH---T-TCCEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCEEEEe---CCCccCCHHHHHHHHHHHHHHHh---C-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999 99999999987665544332211 1 1222222 49999999999999 8899999887654
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.64 E-value=4e-17 Score=160.36 Aligned_cols=172 Identities=13% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.... -.|.+|. ..+.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 345677899999999999999999999999999 6799999999998764322 2466665 3445
Q ss_pred ceEEEecccccccccCC-----CCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~-----~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+....... .......++.+...+. -+.+++|+ .+|+++++| ||++.||
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD---EP~s~LD 165 (359)
T 2yyz_A 89 HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD---EPLSNLD 165 (359)
T ss_dssp TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccCC
Confidence 66777766553221100 0001111222211111 15677887 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 166 ~~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 217 (359)
T 2yyz_A 166 ANLRMIMRAEIKHLQQ---ELGITS-VYVTHDQAEAMTMASRI-AVFNQGKLVQYGT 217 (359)
T ss_dssp HHHHHHHHHHHHHHHH---HHCCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH---hcCCEE-EEEcCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9987665554332221 111222 12249999999999999 8999999987765
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.64 E-value=3.6e-17 Score=151.87 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=111.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......+..|+++||+||||||||||+++|+|. ..|++|.|.++|.++... .-.|.+|
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 345677899999999999999999999999999 779999999999765321 1246676
Q ss_pred C-ccccceEEEecccccccccCCCCCc-----h---hhhhHHHhhh---------------hHHhhhhcc-CCCCeEEec
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHEGQGLG-----N---SFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~~~~l~-----~---~~l~~l~~~d---------------~il~vv~a~-~~~~vl~ld 138 (394)
. ..+..+++.|+..+........... . ..+..+...+ --+.+++|+ .+|+++++|
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 6 3344456666554321100000000 0 1111111111 015677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++++|+...+.+...+..+.+ .....+.. .+|+++. ..+||++ .+|++|+++..++..
T Consensus 171 ---EPts~LD~~~~~~i~~~l~~l~~---~~g~tvi~-vtHd~~~-~~~~d~i-~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 171 ---QPTWALDSKTGEKIMQLLKKLNE---EDGKTVVV-VTHDINV-ARFGERI-IYLKDGEVEREEKLR 230 (235)
T ss_dssp ---STTTTSCHHHHHHHHHHHHHHHH---HHCCEEEE-ECSCHHH-HTTSSEE-EEEETTEEEEEEECC
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHH---HcCCEEEE-EcCCHHH-HHhCCEE-EEEECCEEEEEcChh
Confidence 99999999997665554332221 11122212 2499985 4789999 899999998765543
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.64 E-value=3.1e-17 Score=152.83 Aligned_cols=170 Identities=15% Similarity=0.245 Sum_probs=110.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-ccccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAF 89 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~~ 89 (394)
.....++. +++||+||||||||||+++|+|. ..|++|.|.++|.++.... -.|.||. ..+..
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ 84 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPH 84 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCC
Confidence 45567889 99999999999999999999999 6799999999997653211 2466665 33344
Q ss_pred eEEEecccccccccC---CCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 90 LEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 90 i~~~D~~gl~~~~~~---~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
+++.|...+...... ........++.+...+ --+.+++|+ .+|+++++| ||++++|+..
T Consensus 85 ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD---EPts~LD~~~ 161 (240)
T 2onk_A 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDLKT 161 (240)
T ss_dssp SCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCHHH
T ss_pred CcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHHH
Confidence 555565444221100 0000001111111101 115677777 899999999 9999999998
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.+.+...+..+.+ .....+.. .+|++..+..+||++ .+|++|+++..++
T Consensus 162 ~~~~~~~l~~l~~---~~g~tvi~-vtHd~~~~~~~~d~i-~~l~~G~i~~~g~ 210 (240)
T 2onk_A 162 KGVLMEELRFVQR---EFDVPILH-VTHDLIEAAMLADEV-AVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHHHH---HHTCCEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHH---hcCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 7665554332211 11122212 249999999999999 8899999887654
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.63 E-value=4.4e-17 Score=159.49 Aligned_cols=172 Identities=13% Similarity=0.195 Sum_probs=114.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.... -.|.+|. ..+.
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~ 85 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCT
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCcccCC
Confidence 345667899999999999999999999999999 6799999999998764321 2466666 3445
Q ss_pred ceEEEecccccccccC-CC-CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHH
Q 016139 89 FLEIHDIAGLVRGAHE-GQ-GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~~-~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~ 151 (394)
.+++.|+..+...... .. ......++.+...+ --+.+++|+ .+|+++++| ||++.+|...
T Consensus 86 ~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~~ 162 (348)
T 3d31_A 86 HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPRT 162 (348)
T ss_dssp TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHHH
Confidence 5677776554321100 00 00011111111111 115677887 899999999 9999999998
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 152 ~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
.+.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 163 ~~~l~~~l~~l~~---~~g~ti-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 211 (348)
T 3d31_A 163 QENAREMLSVLHK---KNKLTV-LHITHDQTEARIMADRI-AVVMDGKLIQVGK 211 (348)
T ss_dssp HHHHHHHHHHHHH---HTTCEE-EEEESCHHHHHHHCSEE-EEESSSCEEEEEC
T ss_pred HHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 7665544332211 111122 12249999999999999 8999999987664
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.62 E-value=4.2e-17 Score=159.87 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=114.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.... -.|.+|. ..+.
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 100 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ 100 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCcccCC
Confidence 345677899999999999999999999999999 6799999999998764321 1355555 3444
Q ss_pred ceEEEecccccccccC-C----CCCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+...... . .......++.+...+. -+.+++|+ .+|+++++| ||++.||
T Consensus 101 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD 177 (355)
T 1z47_A 101 HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD---EPFAAID 177 (355)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTCCSS
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCC
Confidence 5666666544311110 0 0000111111111111 15677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.+...+..+.+ +....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 178 ~~~r~~l~~~l~~l~~---~~g~tvi~-vTHd~~~a~~~adri-~vl~~G~i~~~g~ 229 (355)
T 1z47_A 178 TQIRRELRTFVRQVHD---EMGVTSVF-VTHDQEEALEVADRV-LVLHEGNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHHHHHHHH---HHTCEEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9987665554433222 11222222 249999999999999 8999999887664
No 20
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.62 E-value=2.2e-16 Score=158.10 Aligned_cols=100 Identities=35% Similarity=0.612 Sum_probs=82.6
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEE
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~ 92 (394)
+.+.....++.+..++|+|+||||||||+|+|++..+.++++||+|+.|+.|.+.+++. ..+.+
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~~~l 209 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTL 209 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CEEEE
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ceEEE
Confidence 44566777888999999999999999999999999887899999999999999988751 34789
Q ss_pred EecccccccccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 93 ~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+|+||+....+...+++..+++.+..++.+++++++
T Consensus 210 ~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDl 245 (416)
T 1udx_A 210 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDA 245 (416)
T ss_dssp EECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEET
T ss_pred EeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCC
Confidence 999999877666666666777777777777776665
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.62 E-value=7.3e-17 Score=159.22 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++..+. -.|.+|. ..+.
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 345667899999999999999999999999999 6799999999998764321 1355555 3344
Q ss_pred ceEEEecccccccccCCC-----CCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+........ ......++.+...+. -+.+++|+ .+|+++++| ||++.||
T Consensus 97 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD 173 (372)
T 1v43_A 97 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSNLD 173 (372)
T ss_dssp CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTTSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCC
Confidence 556666655432111000 000111121211111 15677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 174 ~~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 225 (372)
T 1v43_A 174 AKLRVAMRAEIKKLQQ---KLKVTT-IYVTHDQVEAMTMGDRI-AVMNRGQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHHHHHHHH---HHTCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH---hCCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9987665554433221 112222 22249999999999999 8999999887665
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.62 E-value=1.6e-17 Score=157.66 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=112.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh--h-----hh--hhccCCCc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFKPKSA 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l~--~~~~~~~~ 85 (394)
......+++|+++||+||||||||||+++|+|. ..|++|.|.++|+++. . +. ..|.||..
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSG
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCc
Confidence 445677899999999999999999999999999 6799999999998762 1 11 14667653
Q ss_pred --cccceEEEecccccccccCCC--C---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCC
Q 016139 86 --VPAFLEIHDIAGLVRGAHEGQ--G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~~~~--~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP 143 (394)
.....++.|...+........ . .....++.+...+ -.+.+++|+ .+|+++++| ||
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD---EP 170 (275)
T 3gfo_A 94 DNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD---EP 170 (275)
T ss_dssp GGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE---CT
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---Cc
Confidence 222455555544322111000 0 0001111111111 115677777 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++++|+.....+...+..+.+ +-...+.. .+|++..+..+||++ .+|++|+++..++.
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~---~~g~tvi~-vtHdl~~~~~~~drv-~~l~~G~i~~~g~~ 228 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQK---ELGITIII-ATHDIDIVPLYCDNV-FVMKEGRVILQGNP 228 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH---HHCCEEEE-EESCCSSGGGGCSEE-EEEETTEEEEEECH
T ss_pred cccCCHHHHHHHHHHHHHHHh---hCCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999999997655544333221 11122212 249999999999999 89999999987754
No 23
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.62 E-value=4.8e-17 Score=152.90 Aligned_cols=170 Identities=17% Similarity=0.228 Sum_probs=110.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh----hh--hhccCCC-cccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS-AVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l~--~~~~~~~-~~~~ 88 (394)
.....++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++.. .. ..|.||. ..+.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCC
Confidence 44567899999999999999999999999999 67999999999977532 11 1466665 3344
Q ss_pred ceEEEecccccccccC-CC----CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~~----~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|...+...... .. ......++.+...+ -.+.+++|+ .+|+++++| ||++++|
T Consensus 102 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~LD 178 (256)
T 1vpl_A 102 NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSGLD 178 (256)
T ss_dssp TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTTCC
T ss_pred CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccccC
Confidence 4566665443211000 00 00011111111111 115677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.....+...+..+. +-...+.. .+|++..+..+|+++ .+|++|+++..++
T Consensus 179 ~~~~~~l~~~l~~l~----~~g~tiii-vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 179 VLNAREVRKILKQAS----QEGLTILV-SSHNMLEVEFLCDRI-ALIHNGTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHHHHHH----HTTCEEEE-EECCHHHHTTTCSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHH----hCCCEEEE-EcCCHHHHHHHCCEE-EEEECCEEEEecC
Confidence 998766554433221 11112212 249999999999999 8899999887654
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.61 E-value=3.6e-17 Score=153.85 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=113.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA- 85 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~- 85 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 92 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCc
Confidence 345667889999999999999999999999999 679999999999776321 1 24777763
Q ss_pred cccceEEEecccccccc-cCC-----------CC------CchhhhhHHHhhhh--------------HHhhhhcc-CCC
Q 016139 86 VPAFLEIHDIAGLVRGA-HEG-----------QG------LGNSFLSHIRAVDG--------------IFHVLRAF-EDP 132 (394)
Q Consensus 86 ~~~~i~~~D~~gl~~~~-~~~-----------~~------l~~~~l~~l~~~d~--------------il~vv~a~-~~~ 132 (394)
.+..+++.|...+.... ..+ .. ....+++.+...+. -+.+++|+ .+|
T Consensus 93 l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p 172 (257)
T 1g6h_A 93 PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP 172 (257)
T ss_dssp GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCC
Confidence 34456666665443211 000 00 00111111111111 15677777 899
Q ss_pred CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 133 ~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
+++++| ||++++|+...+.+...+..+. +. ...+... +|++..+..+||++ .+|++|+++..++.
T Consensus 173 ~lllLD---EPts~LD~~~~~~l~~~l~~l~---~~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 173 KMIVMD---EPIAGVAPGLAHDIFNHVLELK---AK-GITFLII-EHRLDIVLNYIDHL-YVMFNGQIIAEGRG 237 (257)
T ss_dssp SEEEEE---STTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEE-CSCCSTTGGGCSEE-EEEETTEEEEEEES
T ss_pred CEEEEe---CCccCCCHHHHHHHHHHHHHHH---HC-CCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 999999 9999999998766554433221 11 1222122 49999999999999 88999998876653
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.61 E-value=5.1e-17 Score=159.78 Aligned_cols=172 Identities=12% Similarity=0.215 Sum_probs=114.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-----hhccCCC-cccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-----~~~~~~~-~~~~ 88 (394)
......++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.... -.|.+|. ..+.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP 88 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccCC
Confidence 445677899999999999999999999999999 6799999999998764322 1456665 3445
Q ss_pred ceEEEecccccccccC-C-C---CCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 89 FLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~-~-~---~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
.+++.|+..+...... . . ......++.++..+ --+.+++|+ .+|+++++| ||++.||
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~LD 165 (362)
T 2it1_A 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD---EPLSNLD 165 (362)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---SGGGGSC
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCC
Confidence 5666666554311100 0 0 00001111111111 115677777 899999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
....+.....+..+.+ +....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 166 ~~~r~~l~~~l~~l~~---~~g~tvi~-vTHd~~~a~~~adri-~vl~~G~i~~~g~ 217 (362)
T 2it1_A 166 ALLRLEVRAELKRLQK---ELGITTVY-VTHDQAEALAMADRI-AVIREGEILQVGT 217 (362)
T ss_dssp HHHHHHHHHHHHHHHH---HHTCEEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHH---hCCCEEEE-ECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9987665554433221 11222212 249999999999999 8999999987664
No 26
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.61 E-value=1.8e-17 Score=152.76 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=107.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----------hhhccCC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPK 83 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----------~~~~~~~ 83 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++... .-.|.||
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 89 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEec
Confidence 345567889999999999999999999999999 679999999999765321 1246666
Q ss_pred C-ccccceEEEecccccccccC-C----CCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 84 S-AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 84 ~-~~~~~i~~~D~~gl~~~~~~-~----~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
. ..+..+++.|...+...... . .......++.+...+ --+.+++|+ .+|+++++| |
T Consensus 90 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---E 166 (224)
T 2pcj_A 90 FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD---E 166 (224)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE---S
T ss_pred CcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 5 23344555555433211100 0 000001111111111 115677887 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~ 204 (394)
|++++|+...+.+...+..+.+ . ...+... +|+...+ .+||++ .+|++|+++..+
T Consensus 167 Pt~~LD~~~~~~~~~~l~~l~~---~-g~tvi~v-tHd~~~~-~~~d~v-~~l~~G~i~~~g 221 (224)
T 2pcj_A 167 PTGNLDSANTKRVMDIFLKINE---G-GTSIVMV-THERELA-ELTHRT-LEMKDGKVVGEI 221 (224)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCHHHH-TTSSEE-EEEETTEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---C-CCEEEEE-cCCHHHH-HhCCEE-EEEECCEEEEEe
Confidence 9999999987655444322211 1 1222122 4998876 789998 788999887654
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.61 E-value=4.7e-17 Score=152.40 Aligned_cols=169 Identities=16% Similarity=0.218 Sum_probs=109.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCc-cc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSA-VP 87 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~-~~ 87 (394)
.....+..|++++|+||||||||||+++|+|. ..|+ |.|.++|.++... . ..|.||.. .+
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPP 85 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccC
Confidence 44567889999999999999999999999999 6799 9999999876432 1 24667663 33
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCC-------eEEecCCCCCcc
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPD-------IIHVDDSVDPVR 145 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~-------vl~ld~~~eP~~ 145 (394)
..+++.|...+..............++.+...+ --+.+++|+ .+|+ ++++| ||++
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD---EPts 162 (249)
T 2qi9_C 86 FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---EPMN 162 (249)
T ss_dssp TTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---STTT
T ss_pred CCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE---CCcc
Confidence 445666655443211100000001111111111 114566666 6888 99999 9999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 146 ~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
++|+...+.+...+..+. .. ...+... +|+...+..+|+++ .+|++|+++..++
T Consensus 163 ~LD~~~~~~l~~~l~~l~---~~-g~tviiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 163 SLDVAQQSALDKILSALS---QQ-GLAIVMS-SHDLNHTLRHAHRA-WLLKGGKMLASGR 216 (249)
T ss_dssp TCCHHHHHHHHHHHHHHH---HT-TCEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHH---hC-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999998765544432221 11 1122122 49999999999999 8889999876653
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.61 E-value=7.2e-17 Score=159.40 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=114.6
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh------hh-----hhccCCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC-----QLFKPKS 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~------l~-----~~~~~~~ 84 (394)
.....++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.. +. -.|.+|.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCEEEEeCC
Confidence 45667889999999999999999999999999 67999999999977533 11 1355665
Q ss_pred -ccccceEEEecccccccccC-CC----CCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCC
Q 016139 85 -AVPAFLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (394)
Q Consensus 85 -~~~~~i~~~D~~gl~~~~~~-~~----~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP 143 (394)
..+..+++.|+..+...... .. .....+++.+...+. -+.+++|+ .+|+++++| ||
T Consensus 90 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP 166 (372)
T 1g29_1 90 YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---EP 166 (372)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CT
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC---CC
Confidence 34445666666554321110 00 000111222211111 15677887 899999999 99
Q ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 144 ~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
++.||....+.....+..+.+ +....+ .-.+|+..++..+||++ .+|++|+++..++.
T Consensus 167 ~s~LD~~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 167 LSNLDAKLRVRMRAELKKLQR---QLGVTT-IYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSP 224 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH---HHTCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred CccCCHHHHHHHHHHHHHHHH---hcCCEE-EEECCCHHHHHHhCCEE-EEEeCCEEEEeCCH
Confidence 999999987665554333221 112222 22249999999999999 89999999877653
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.60 E-value=5.5e-17 Score=159.24 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=113.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhh-----hh-----hhccCCC-
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC-----QLFKPKS- 84 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~-----l~-----~~~~~~~- 84 (394)
.....++.|++++|+||||||||||+++|+|+ ..|++|.|.++|+++.. .. -.|.+|.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 45677899999999999999999999999999 67999999999977633 11 1355565
Q ss_pred ccccceEEEecccccccccCCC-----CCchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCc
Q 016139 85 AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (394)
Q Consensus 85 ~~~~~i~~~D~~gl~~~~~~~~-----~l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~ 144 (394)
..+..+++.|+..+........ ......++.+...+. -+.+++|+ .+|+++++| ||+
T Consensus 92 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD---EP~ 168 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---EPF 168 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STT
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCc
Confidence 3445566667665532211000 000111111111111 15677887 899999999 999
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 145 ~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.||....+.....+..+.+ .....+ .-.+|+..++..+||++ .+|++|+++..++
T Consensus 169 s~LD~~~r~~l~~~l~~l~~---~~g~tv-i~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 169 SNLDARMRDSARALVKEVQS---RLGVTL-LVVSHDPADIFAIADRV-GVLVKGKLVQVGK 224 (353)
T ss_dssp TTSCGGGHHHHHHHHHHHHH---HHCCEE-EEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHH---hcCCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999887555444332211 111222 12249999999999999 8999999887664
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.59 E-value=9.4e-17 Score=154.56 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=113.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~~ 88 (394)
.....++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++..+. ..|.||.....
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf 140 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC
Confidence 44567889999999999999999999999999 6799999999998765432 25778875444
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhhh-------------------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-------------------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d-------------------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..++.|+..+......... ....++.....+ -.+.++||+ .+|+++++| |
T Consensus 141 ~~Tv~eNi~~~~~~~~~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD---E 216 (306)
T 3nh6_A 141 NDTIADNIRYGRVTAGNDE-VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD---E 216 (306)
T ss_dssp SEEHHHHHHTTSTTCCHHH-HHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---C
T ss_pred cccHHHHHHhhcccCCHHH-HHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE---C
Confidence 5677776655432111000 000011100000 115667777 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|...+..+...+..+.+ ...+ .-.+|++..+.. ||+| .+|++|+++..|+.
T Consensus 217 Pts~LD~~~~~~i~~~l~~l~~-----~~Tv-i~itH~l~~~~~-aD~i-~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 217 ATSALDTSNERAIQASLAKVCA-----NRTT-IVVAHRLSTVVN-ADQI-LVIKDGCIVERGRH 272 (306)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHT-----TSEE-EEECCSHHHHHT-CSEE-EEEETTEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHcC-----CCEE-EEEEcChHHHHc-CCEE-EEEECCEEEEECCH
Confidence 9999999987665444322211 1122 122499999876 9999 89999999988764
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.57 E-value=9.1e-17 Score=151.88 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=111.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh--h--hhccCCCc--ccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--C--QLFKPKSA--VPA 88 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l--~--~~~~~~~~--~~~ 88 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.. ...
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~ 92 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF 92 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCC
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhcC
Confidence 345677899999999999999999999999999 679999999999765321 1 24667652 233
Q ss_pred ceEEEeccccccccc-CCCCC---chhhhhHHHhh--hh--------------HHhhhhcc-CCCCeEEecCCCCCcchH
Q 016139 89 FLEIHDIAGLVRGAH-EGQGL---GNSFLSHIRAV--DG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~-~~~~l---~~~~l~~l~~~--d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~l 147 (394)
..++.|...+..... ..... ....++.+... +. -+.+++|+ .+|+++++| ||++++
T Consensus 93 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~L 169 (266)
T 2yz2_A 93 AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD---EPLVGL 169 (266)
T ss_dssp CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTC
T ss_pred CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CccccC
Confidence 455556544321110 00010 11122222211 11 15677777 899999999 999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 148 d~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|+.....+...+..+. .. ...+... +|++..+..+||++ .+|++|+++..++
T Consensus 170 D~~~~~~l~~~l~~l~---~~-g~tii~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 221 (266)
T 2yz2_A 170 DREGKTDLLRIVEKWK---TL-GKTVILI-SHDIETVINHVDRV-VVLEKGKKVFDGT 221 (266)
T ss_dssp CHHHHHHHHHHHHHHH---HT-TCEEEEE-CSCCTTTGGGCSEE-EEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHH---Hc-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9998765544432221 11 1222122 49999988999999 8899999886654
No 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.57 E-value=2.3e-16 Score=147.47 Aligned_cols=168 Identities=19% Similarity=0.184 Sum_probs=108.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++... . -.|.||....
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcc
Confidence 345677899999999999999999999999999 679999999999776421 1 2467776322
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh-------------------------hhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------------------DGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~-------------------------d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.|+..+..... ........++.+... ---+.+++|+ .+|+++++|
T Consensus 95 ~~~tv~enl~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD--- 170 (247)
T 2ff7_A 95 LNRSIIDNISLANPGM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD--- 170 (247)
T ss_dssp TTSBHHHHHTTTCTTC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC---
T ss_pred ccccHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 2346666554432100 000000011111000 0115677777 899999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.....+...+..+ .. ...+... +|++..+.. ||++ .+|++|+++..++
T Consensus 171 EPts~LD~~~~~~i~~~l~~~----~~-g~tviiv-tH~~~~~~~-~d~v-~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 171 EATSALDYESEHVIMRNMHKI----CK-GRTVIII-AHRLSTVKN-ADRI-IVMEKGKIVEQGK 226 (247)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH----HT-TSEEEEE-CSSGGGGTT-SSEE-EEEETTEEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHH----cC-CCEEEEE-eCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 999999999876655443322 11 1222122 399887754 9999 8889999887654
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=5.5e-17 Score=154.38 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=108.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh--h-----hh--hhccCCCc-
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFKPKSA- 85 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~--~-----l~--~~~~~~~~- 85 (394)
.....++.|+++||+||||||||||+++|+|. ..|++|.|.++|.++. . .. ..|.||..
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLL 107 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHH
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcc
Confidence 45567889999999999999999999999999 6799999999997653 1 11 13555542
Q ss_pred --cccceEEEeccccccccc----C--CCC---CchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecC
Q 016139 86 --VPAFLEIHDIAGLVRGAH----E--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 86 --~~~~i~~~D~~gl~~~~~----~--~~~---l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~ 139 (394)
.+..+++.|...+..... . ... .....++.+...+ --+.+++|+ .+|+++++|
T Consensus 108 ~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLD- 186 (279)
T 2ihy_A 108 EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD- 186 (279)
T ss_dssp TTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE-
T ss_pred cccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEe-
Confidence 112235555543321100 0 000 0001111111111 115677777 899999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhh--hcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM--KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~--~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+.+ . ...+ ... +|++..+..+||++ .+|++|+++..++
T Consensus 187 --EPts~LD~~~~~~l~~~l~~l~~---~-g~tv~~iiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 187 --EPAAGLDFIARESLLSILDSLSD---S-YPTLAMIYV-THFIEEITANFSKI-LLLKDGQSIQQGA 246 (279)
T ss_dssp --STTTTCCHHHHHHHHHHHHHHHH---H-CTTCEEEEE-ESCGGGCCTTCCEE-EEEETTEEEEEEE
T ss_pred --CCccccCHHHHHHHHHHHHHHHH---C-CCEEEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999997666554433221 1 2222 233 49999988999999 8899999887654
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.54 E-value=4.2e-16 Score=147.70 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=107.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~~ 88 (394)
.....++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++... . ..|.||.....
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 105 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccc
Confidence 44577899999999999999999999999999 679999999999876431 1 24677763222
Q ss_pred ceEEEecccccccccCC-CCC--------chhhhhHH--Hh-------h-------hhHHhhhhcc-CCCCeEEecCCCC
Q 016139 89 FLEIHDIAGLVRGAHEG-QGL--------GNSFLSHI--RA-------V-------DGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~-~~l--------~~~~l~~l--~~-------~-------d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..++.|+..+....... ... ...++..+ .. . ---+.+++|+ .+|+++++| |
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---E 182 (271)
T 2ixe_A 106 GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD---N 182 (271)
T ss_dssp SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE---S
T ss_pred cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 24666655443211100 000 00011111 00 0 0125677777 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
|++.+|+.....+...+..+.+ .....+.. .+|++..+.. ||++ .+|++|+++..++
T Consensus 183 Pts~LD~~~~~~i~~~l~~~~~---~~g~tvii-vtHd~~~~~~-~d~v-~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 183 ATSALDAGNQLRVQRLLYESPE---WASRTVLL-ITQQLSLAER-AHHI-LFLKEGSVCEQGT 239 (271)
T ss_dssp TTTTCCHHHHHHHHHHHHHCTT---TTTSEEEE-ECSCHHHHTT-CSEE-EEEETTEEEEEEC
T ss_pred CccCCCHHHHHHHHHHHHHHHh---hcCCEEEE-EeCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 9999999986554433221110 00111212 2399988765 9999 8889999887664
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.54 E-value=8.8e-17 Score=151.69 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=107.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----hhh-ccCCCccccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQL-FKPKSAVPAF 89 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~-~~~~~~~~~~ 89 (394)
......++ |++++|+||||||||||+++|+|. . |++|.|.++|.++... .-. |.||.... .
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~ 87 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-G 87 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-T
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-C
Confidence 34567789 999999999999999999999999 8 9999999999765321 123 66665333 4
Q ss_pred eEEEecccccccccC-CCCCchhhhhHHHhh-h--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHH
Q 016139 90 LEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (394)
Q Consensus 90 i~~~D~~gl~~~~~~-~~~l~~~~l~~l~~~-d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~ 152 (394)
+++.|...+...... .......+++.+... + .-+.+++|+ .+|+++++| ||++++|+...
T Consensus 88 ~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~~ 164 (263)
T 2pjz_A 88 VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD---EPFENVDAARR 164 (263)
T ss_dssp SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTCCHHHH
T ss_pred CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCccccCHHHH
Confidence 555554433211000 000001111111111 1 125677777 899999999 99999999886
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHH-HHHHHhcCCCceecCC
Q 016139 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQ-RVKAWLQDGKDVRLGD 205 (394)
Q Consensus 153 el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~-ri~~~L~~g~~~~~~~ 205 (394)
+.+...+..+ ...+.. .+|++..+..+|+ ++ .+|++|+++..++
T Consensus 165 ~~l~~~L~~~-------~~tvii-vtHd~~~~~~~~d~~i-~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 165 HVISRYIKEY-------GKEGIL-VTHELDMLNLYKEYKA-YFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHS-------CSEEEE-EESCGGGGGGCTTSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHh-------cCcEEE-EEcCHHHHHHhcCceE-EEEECCEEEEecC
Confidence 5443332211 112212 2499999889999 98 8899999887654
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.54 E-value=2.1e-16 Score=147.40 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=105.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... -.|.||....
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence 445678899999999999999999999999999 6799999999997664321 1466666322
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh-------------------------hhhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~-------------------------~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.|+..+..............++.+.. ----+.+++|+ .+|+++++|
T Consensus 88 ~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD--- 164 (243)
T 1mv5_A 88 MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD--- 164 (243)
T ss_dssp CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---
T ss_pred ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 2346666554431000000000000000000 00114566666 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+ .+ ...+.. .+|+...+. .||++ .+|++|+++..++
T Consensus 165 EPts~LD~~~~~~i~~~l~~~----~~-~~tvi~-vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 165 EATASLDSESESMVQKALDSL----MK-GRTTLV-IAHRLSTIV-DADKI-YFIEKGQITGSGK 220 (243)
T ss_dssp CCSCSSCSSSCCHHHHHHHHH----HT-TSEEEE-ECCSHHHHH-HCSEE-EEEETTEECCCSC
T ss_pred CCcccCCHHHHHHHHHHHHHh----cC-CCEEEE-EeCChHHHH-hCCEE-EEEECCEEEEeCC
Confidence 999999998764443332211 11 122212 249988775 59999 8889999876654
No 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.51 E-value=2.5e-15 Score=140.98 Aligned_cols=164 Identities=16% Similarity=0.259 Sum_probs=102.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCC-ccccceEEEe
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHD 94 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~-~~~~~i~~~D 94 (394)
.....++.|+++||+||||||||||+++|+|. ..|++|.|.+.. ...|.||. ..+..+++.|
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~------~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQ------SIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECS------CEEEECSCCCCSSCCBHHH
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEec------cEEEEcCCCccCCCCCHHH
Confidence 44567889999999999999999999999999 679999997321 12355554 2333455555
Q ss_pred cccccccccCC-----CC----CchhhhhHHHhhhh--------------HHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 95 IAGLVRGAHEG-----QG----LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 95 ~~gl~~~~~~~-----~~----l~~~~l~~l~~~d~--------------il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
...+......+ .. .....++.+...+. -+.+++|+ .+|+++++| ||++++|+.
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD~~ 162 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD---EPTSALDLA 162 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES---SSSTTSCHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCHH
Confidence 54443211100 00 00011111111111 15677777 899999999 999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
..+.+...+..+.+ .....+.. .+|+...+..+||++ .+|++|+ +..++
T Consensus 163 ~~~~l~~~l~~l~~---~~g~tvi~-vtHd~~~~~~~~d~v-~~l~~G~-~~~g~ 211 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQ---SQNMTVVF-TTHQPNQVVAIANKT-LLLNKQN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHHHHH---TSCCEEEE-EESCHHHHHHHCSEE-EEEETTE-EEEEE
T ss_pred HHHHHHHHHHHHHH---hcCCEEEE-EecCHHHHHHhCCEE-EEEeCCe-EecCC
Confidence 87555443322211 00111212 249999999999999 8889998 76553
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.49 E-value=1.9e-15 Score=142.30 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=105.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh-----h--hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l-----~--~~~~~~~~~~ 87 (394)
......++.|++++|+||||||||||+++|+|. ..| +|.|.++|.++... . -.|.||....
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 104 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF-----------YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTIL 104 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCC
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcc
Confidence 345677899999999999999999999999998 456 89999999876432 1 1467776433
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
...++.|+..+..... . ..+..+.++.+ --.+.+++|+ .+|+++++|
T Consensus 105 ~~~tv~enl~~~~~~~-~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 180 (260)
T 2ghi_A 105 FNETIKYNILYGKLDA-T---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180 (260)
T ss_dssp CSEEHHHHHHTTCTTC-C---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cccCHHHHHhccCCCC-C---HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3356666554421100 0 00100000000 0114566776 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+.....+...+..+. + ...+.. .+|++..+. .||++ .+|++|+++..++
T Consensus 181 ---EPts~LD~~~~~~i~~~l~~l~----~-~~tvii-vtH~~~~~~-~~d~i-~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 181 ---EATSSLDSKTEYLFQKAVEDLR----K-NRTLII-IAHRLSTIS-SAESI-ILLNKGKIVEKGT 236 (260)
T ss_dssp ---CCCCTTCHHHHHHHHHHHHHHT----T-TSEEEE-ECSSGGGST-TCSEE-EEEETTEEEEEEC
T ss_pred ---CccccCCHHHHHHHHHHHHHhc----C-CCEEEE-EcCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 9999999998765544432221 1 122212 249888775 49998 7889999887654
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.49 E-value=5.6e-15 Score=154.36 Aligned_cols=167 Identities=12% Similarity=0.144 Sum_probs=109.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||....
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc
Confidence 445667889999999999999999999999999 6799999999998764321 1467776433
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
...++.|+..+........ .+..+.++.+ .--+.++||+ .+|+++++|
T Consensus 429 ~~~tv~eni~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 429 FNDTIANNIAYAAEGEYTR---EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred ccccHHHHHhccCCCCCCH---HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3345556554432000000 0111111100 0115677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|...+..+...+..+. + .+.+ .-.+|++..+. .||++ .+|++|+++..|+.
T Consensus 506 ---Epts~LD~~~~~~i~~~l~~~~----~-~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 506 ---EATSALDTESERAIQAALDELQ----K-NKTV-LVIAHRLSTIE-QADEI-LVVDEGEIIERGRH 562 (582)
T ss_pred ---CccccCCHHHHHHHHHHHHHHc----C-CCEE-EEEecCHHHHH-hCCEE-EEEECCEEEEECCH
Confidence 9999999998755543322211 1 1112 11249998875 69999 88999999877653
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.46 E-value=2.2e-15 Score=141.07 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=104.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh------h--hhccCCCc-c
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA-V 86 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l------~--~~~~~~~~-~ 86 (394)
.....++.|+++||+||||||||||+++|+|... ..|++|.|.++|.++... . ..|.||.. .
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 91 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDERARKGLFLAFQYPVE 91 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcc
Confidence 4456788999999999999999999999999721 358999999999765321 1 13566652 2
Q ss_pred ccceEEEecccccccc-cC-CCC------CchhhhhHHHh----------------hhhHHhhhhcc-CCCCeEEecCCC
Q 016139 87 PAFLEIHDIAGLVRGA-HE-GQG------LGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~-~~-~~~------l~~~~l~~l~~----------------~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
+..+++.++..+.... .. ... .....++.+.. ----+.+++|+ .+|+++++|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD--- 168 (250)
T 2d2e_A 92 VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD--- 168 (250)
T ss_dssp CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE---
T ss_pred ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 3334444443221100 00 000 00001111110 00114566666 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHH-HHHHHHHhcCCCceecCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l-~~ri~~~L~~g~~~~~~~ 205 (394)
||++++|+...+.+...+..+. +-...+.. .+|+...+..+ ||++ .+|++|+++..++
T Consensus 169 EPts~LD~~~~~~l~~~l~~l~----~~g~tvi~-vtHd~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 169 ETDSGLDIDALKVVARGVNAMR----GPNFGALV-ITHYQRILNYIQPDKV-HVMMDGRVVATGG 227 (250)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHC----STTCEEEE-ECSSSGGGGTSCCSEE-EEEETTEEEEEES
T ss_pred CCCcCCCHHHHHHHHHHHHHHH----hcCCEEEE-EecCHHHHHHhcCCEE-EEEECCEEEEEeC
Confidence 9999999998655444322211 00111212 23999888888 5998 8889999887654
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=1.2e-14 Score=152.20 Aligned_cols=170 Identities=14% Similarity=0.243 Sum_probs=112.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||....
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc
Confidence 455667899999999999999999999999999 6799999999998875432 2477777443
Q ss_pred cceEEEecccccccccCCCCCc--------hhhhhHHH-h---------------hhhHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLG--------NSFLSHIR-A---------------VDGIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~--------~~~l~~l~-~---------------~d~il~vv~a~-~~~~vl~ld~~~e 142 (394)
...++.|+..+........... ..+...+. . -.--+.++||+ .+|+++++| |
T Consensus 441 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD---E 517 (598)
T 3qf4_B 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD---E 517 (598)
T ss_dssp CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC---C
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 3446666554432111110000 00011000 0 00125677887 899999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|...+..+...+..+ . + .+.+ .-.+|++..+.. ||++ .+|++|+++..|+.
T Consensus 518 pts~LD~~~~~~i~~~l~~~---~-~-~~t~-i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 518 ATSNVDTKTEKSIQAAMWKL---M-E-GKTS-IIIAHRLNTIKN-ADLI-IVLRDGEIVEMGKH 573 (598)
T ss_dssp CCTTCCHHHHHHHHHHHHHH---H-T-TSEE-EEESCCTTHHHH-CSEE-EEECSSSEEECSCH
T ss_pred CccCCCHHHHHHHHHHHHHH---c-C-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999999875554433211 1 0 1111 112499988765 9999 89999999988764
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.45 E-value=2.7e-15 Score=141.88 Aligned_cols=174 Identities=16% Similarity=0.119 Sum_probs=103.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--------hhccCCCc-c
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKSA-V 86 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--------~~~~~~~~-~ 86 (394)
.....++.|+++||+||||||||||+++|+|... ..|++|.|.++|.++.... -.|.+|.. .
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 3456789999999999999999999999999821 2488999999998764211 13566652 2
Q ss_pred ccceEEEecccccc-------cc---cCC--CCCchhhhhHHHh----------------hhhHHhhhhcc-CCCCeEEe
Q 016139 87 PAFLEIHDIAGLVR-------GA---HEG--QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIHV 137 (394)
Q Consensus 87 ~~~i~~~D~~gl~~-------~~---~~~--~~l~~~~l~~l~~----------------~d~il~vv~a~-~~~~vl~l 137 (394)
+..+++.+...+.. +. ... .......++.+.. ---.+.+++|+ .+|+++++
T Consensus 109 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlL 188 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 188 (267)
T ss_dssp CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 22333333221110 00 000 0000000110000 00114556666 69999999
Q ss_pred cCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHH-HHHHHHHhcCCCceecCCCC
Q 016139 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 138 d~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l-~~ri~~~L~~g~~~~~~~~~ 207 (394)
| ||++++|+...+.+...+..+. +. ...+.. .+|++..+..+ ||++ .+|++|+++..++..
T Consensus 189 D---EPts~LD~~~~~~l~~~l~~l~---~~-g~tvii-vtHd~~~~~~~~~d~v-~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 189 D---ESDSGLDIDALKVVADGVNSLR---DG-KRSFII-VTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 250 (267)
T ss_dssp E---STTTTCCHHHHHHHHHHHHTTC---CS-SCEEEE-ECSSGGGGGTSCCSEE-EEEETTEEEEEECTT
T ss_pred e---CCCCCCCHHHHHHHHHHHHHHH---hc-CCEEEE-EeeCHHHHHhhcCCEE-EEEECCEEEEEcCHH
Confidence 9 9999999998644433221110 00 111111 23999888776 8998 888999998776643
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.44 E-value=8.1e-15 Score=153.51 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=109.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~~ 88 (394)
.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||.....
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 430 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCccc
Confidence 34567789999999999999999999999999 6799999999998764321 14677764322
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhhh----------------------------hHHhhhhcc-CCCCeEEecC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d----------------------------~il~vv~a~-~~~~vl~ld~ 139 (394)
..++.|+..+......... ..+..+.++.+. --+.++||+ .+|+++++|
T Consensus 431 ~~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD- 508 (595)
T 2yl4_A 431 SCSIAENIAYGADDPSSVT-AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD- 508 (595)
T ss_dssp SSBHHHHHHTTSSSTTTSC-HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE-
T ss_pred CCCHHHHHhhcCCCccccC-HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 3456665544321100000 011111111110 014566776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|...+..+...+..+.+ .+.+ .-.+|++..+. .||++ .+|++|+++..|+.+
T Consensus 509 --Epts~LD~~~~~~i~~~l~~~~~-----~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 509 --EATSALDAENEYLVQEALDRLMD-----GRTV-LVIAHRLSTIK-NANMV-AVLDQGKITEYGKHE 566 (595)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHT-----TSEE-EEECCCHHHHH-HSSEE-EEEETTEEEEEECSC
T ss_pred --CcccCCCHHHHHHHHHHHHHHhc-----CCEE-EEEecCHHHHH-cCCEE-EEEECCEEEEECCHH
Confidence 99999999987555443322211 1122 11249998875 59999 889999998777654
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.44 E-value=1.4e-14 Score=151.38 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=112.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+....++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||....
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 344567889999999999999999999999999 6799999999998875432 1578887544
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
...++.|+..+....... .+..+.++.+ .-.+.++||+ .+|+++++|
T Consensus 429 f~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlD 504 (587)
T 3qf4_A 429 FSGTIKENLKWGREDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504 (587)
T ss_dssp CSEEHHHHHTTTCSSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred cCccHHHHHhccCCCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 445677766543221110 0111111110 0115677777 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|+..+..+...+..+ .+ .+++ .-.+|++..+. .||++ .+|++|+++..|+.
T Consensus 505 ---Epts~LD~~~~~~i~~~l~~~----~~-~~tv-i~itH~l~~~~-~~d~i-~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 505 ---DCTSSVDPITEKRILDGLKRY----TK-GCTT-FIITQKIPTAL-LADKI-LVLHEGKVAGFGTH 561 (587)
T ss_dssp ---SCCTTSCHHHHHHHHHHHHHH----ST-TCEE-EEEESCHHHHT-TSSEE-EEEETTEEEEEECH
T ss_pred ---CCcccCCHHHHHHHHHHHHHh----CC-CCEE-EEEecChHHHH-hCCEE-EEEECCEEEEECCH
Confidence 999999999875554332211 00 1111 11249998875 79999 89999999988764
No 45
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.44 E-value=2.1e-14 Score=132.66 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=98.8
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......++.|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~------i~~v~q~~~~~~~tv~e 87 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQFSWIMPGTIKE 87 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSC------EEEECSSCCCCSBCHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCE------EEEEecCCcccCCCHHH
Confidence 445677899999999999999999999999999 6799999999873 23555542211124444
Q ss_pred cccccccccCC--------CCCchhhhhH---------------H-HhhhhHHhhhhcc-CCCCeEEecCCCCCcchHHH
Q 016139 95 IAGLVRGAHEG--------QGLGNSFLSH---------------I-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (394)
Q Consensus 95 ~~gl~~~~~~~--------~~l~~~~l~~---------------l-~~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (394)
+..+....... .++. .++.. + ..-.--+.+++|+ .+|+++++| ||++++|+
T Consensus 88 nl~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD---EPts~LD~ 163 (229)
T 2pze_A 88 NIIFGVSYDEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDV 163 (229)
T ss_dssp HHHTTSCCCHHHHHHHHHHTTCH-HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE---STTTTSCH
T ss_pred HhhccCCcChHHHHHHHHHhCcH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CcccCCCH
Confidence 43332100000 0000 00000 0 0000124566776 799999999 99999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 150 i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
...+.+...+ +.+ +.. ...+.. .+|+...+. .||++ .+|++|+++..++
T Consensus 164 ~~~~~i~~~l--~~~-~~~-~~tvi~-vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 212 (229)
T 2pze_A 164 LTEKEIFESC--VCK-LMA-NKTRIL-VTSKMEHLK-KADKI-LILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHHHC--CCC-CTT-TSEEEE-ECCCHHHHH-HCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHH--HHH-hhC-CCEEEE-EcCChHHHH-hCCEE-EEEECCEEEEECC
Confidence 8864433211 000 000 111212 239988775 59998 8889999887654
No 46
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.44 E-value=6.8e-14 Score=127.92 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=97.7
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh--hhccCCCc-cccceEE
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPAFLEI 92 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~--~~~~~~~~-~~~~i~~ 92 (394)
.....++.|++++|+||||||||||+++|+|. ..|++|.|.++|.++.... ..|.||.. .+..+++
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv 95 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISV 95 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBH
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCH
Confidence 34567889999999999999999999999999 6799999999997753111 24666652 3334555
Q ss_pred EecccccccccC-CCC--CchhhhhHHHh-------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHH
Q 016139 93 HDIAGLVRGAHE-GQG--LGNSFLSHIRA-------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (394)
Q Consensus 93 ~D~~gl~~~~~~-~~~--l~~~~l~~l~~-------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~ 155 (394)
.|...+...... ... .....++.+.. ---.+.+++|+ .+|+++++| ||++++|+...+.+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD---EPts~LD~~~~~~l 172 (214)
T 1sgw_A 96 EDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSKHKV 172 (214)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHHHHH
Confidence 555433211000 000 00011111100 01125677777 899999999 99999999887655
Q ss_pred HhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Q 016139 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (394)
Q Consensus 156 ~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri 191 (394)
...+..+.+ . ...+.. .+|+...+..+|+++
T Consensus 173 ~~~l~~~~~---~-g~tiii-vtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 173 LKSILEILK---E-KGIVII-SSREELSYCDVNENL 203 (214)
T ss_dssp HHHHHHHHH---H-HSEEEE-EESSCCTTSSEEEEG
T ss_pred HHHHHHHHh---C-CCEEEE-EeCCHHHHHHhCCEE
Confidence 544332211 1 222222 248888877777776
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.42 E-value=8.6e-15 Score=152.96 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=108.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~~ 88 (394)
.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||.....
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCC
Confidence 45567889999999999999999999999999 6799999999998764321 24777774333
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEecC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
..++.|+..+....... ..+..+.++.+ .--+.++||+ .+|+++++|
T Consensus 430 ~~tv~eni~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD- 505 (582)
T 3b60_A 430 NDTVANNIAYARTEEYS---REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD- 505 (582)
T ss_dssp SSBHHHHHHTTTTSCCC---HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE-
T ss_pred CCCHHHHHhccCCCCCC---HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-
Confidence 34666655543200000 00111111100 0014566776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
||++.+|...+..+...+..+ .+ .+.+ .-.+|++..+. .||++ .+|++|+++..|+
T Consensus 506 --Epts~LD~~~~~~i~~~l~~~----~~-~~tv-i~itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b60_A 506 --EATSALDTESERAIQAALDEL----QK-NRTS-LVIAHRLSTIE-QADEI-VVVEDGIIVERGT 561 (582)
T ss_dssp --TTTSSCCHHHHHHHHHHHHHH----HT-TSEE-EEECSCGGGTT-TCSEE-EEEETTEEEEEEC
T ss_pred --CccccCCHHHHHHHHHHHHHH----hC-CCEE-EEEeccHHHHH-hCCEE-EEEECCEEEEecC
Confidence 999999999875554332221 11 1122 11239888775 69999 8899999887765
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.42 E-value=2.9e-14 Score=132.37 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=101.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEe
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D 94 (394)
......++.|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~~~~~tv~e 84 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS------VAYVPQQAWIQNDSLRE 84 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC------EEEECSSCCCCSEEHHH
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE------EEEEcCCCcCCCcCHHH
Confidence 445677899999999999999999999999999 6799999999883 24555553333455555
Q ss_pred cccccccccCCCCCchhhhh------HHHh-------------------hhhHHhhhhcc-CCCCeEEecCCCCCcchHH
Q 016139 95 IAGLVRGAHEGQGLGNSFLS------HIRA-------------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (394)
Q Consensus 95 ~~gl~~~~~~~~~l~~~~l~------~l~~-------------------~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (394)
+..+...... ....+..+ .+.. ----+.+++|+ .+|+++++| ||++++|
T Consensus 85 nl~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD 159 (237)
T 2cbz_A 85 NILFGCQLEE--PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD---DPLSAVD 159 (237)
T ss_dssp HHHTTSCCCT--THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---STTTTSC
T ss_pred HhhCccccCH--HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccC
Confidence 5444221110 00000000 0000 00114566666 799999999 9999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCC
Q 016139 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (394)
Q Consensus 149 ~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~ 205 (394)
+.....+...+... +.+.+ ...+.. .+|+...+. .||++ .+|++|+++..++
T Consensus 160 ~~~~~~i~~~l~~~-~~~~~-~~tvii-vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 160 AHVGKHIFENVIGP-KGMLK-NKTRIL-VTHSMSYLP-QVDVI-IVMSGGKISEMGS 211 (237)
T ss_dssp HHHHHHHHHHTTST-TSTTT-TSEEEE-ECSCSTTGG-GSSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHH-HhhcC-CCEEEE-EecChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 98864443322100 00000 111111 238887764 69998 7889998876654
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.41 E-value=1.4e-14 Score=151.29 Aligned_cols=165 Identities=14% Similarity=0.230 Sum_probs=109.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCcccc
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~~ 88 (394)
.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||.....
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 427 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC
Confidence 44567889999999999999999999999999 6799999999998775432 25777774333
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEecC
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVDD 139 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld~ 139 (394)
..++.|+..+....... .+..+.++.+ .--+.++||+ .+|+++++|
T Consensus 428 ~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD- 502 (578)
T 4a82_A 428 SDTVKENILLGRPTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD- 502 (578)
T ss_dssp SSBHHHHHGGGCSSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE-
T ss_pred cccHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 34666665443211100 0111111110 0115566776 799999999
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 140 ~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.+|+..+......+..+. + .+.+ .-.+|++..+.. ||++ .+|++|+++..|+.
T Consensus 503 --Epts~LD~~~~~~i~~~l~~~~----~-~~t~-i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 503 --EATSALDLESESIIQEALDVLS----K-DRTT-LIVAHRLSTITH-ADKI-VVIENGHIVETGTH 559 (578)
T ss_dssp --STTTTCCHHHHHHHHHHHHHHT----T-TSEE-EEECSSGGGTTT-CSEE-EEEETTEEEEEECH
T ss_pred --CccccCCHHHHHHHHHHHHHHc----C-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 9999999988655433322111 0 1111 112399988765 9999 89999999888764
No 50
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.39 E-value=4e-14 Score=140.49 Aligned_cols=167 Identities=12% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
......++.|++++|+||||||||||+++|+|+ .. ++|.|.++|+++..+. ..|.+|....
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~l 105 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI 105 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-----------SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CC-CCeEEEECCEECCcCChHHHhCCEEEEcCCccc
Confidence 455667899999999999999999999999998 44 7899999998764321 1467776433
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHh-------------------------hhhHHhhhhcc-CCCCeEEecCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDDSV 141 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~-------------------------~d~il~vv~a~-~~~~vl~ld~~~ 141 (394)
...++.++..+....... .....++.++. -.--+.+++|+ .+|+++++|
T Consensus 106 f~~tv~enl~~~~~~~~~--~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLD--- 180 (390)
T 3gd7_A 106 FSGTFRKNLDPNAAHSDQ--EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD--- 180 (390)
T ss_dssp CSEEHHHHHCTTCCSCHH--HHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEE---
T ss_pred CccCHHHHhhhccccCHH--HHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 335666655432111000 00000110000 00124667777 799999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 142 eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++.||..........+. + +.. ...+ .-.+|+.+.+ ..||++ .+|++|+++..++.
T Consensus 181 EPts~LD~~~~~~l~~~l~---~-~~~-~~tv-i~vtHd~e~~-~~aDri-~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 181 EPSAHLDPVTYQIIRRTLK---Q-AFA-DCTV-ILCEARIEAM-LECDQF-LVIEENKVRQYDSI 237 (390)
T ss_dssp SHHHHSCHHHHHHHHHHHH---T-TTT-TSCE-EEECSSSGGG-TTCSEE-EEEETTEEEEESSH
T ss_pred CCccCCCHHHHHHHHHHHH---H-HhC-CCEE-EEEEcCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 9999999987644433321 1 100 1111 1123887654 459999 89999999887753
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.38 E-value=4.6e-14 Score=134.88 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=98.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
.....++.|++++|+||||||||||+++|+|. ..|++|.|.++|. ..|.||.......++.|+
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~l~~~tv~en 118 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQNSWIMPGTIKEN 118 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSC------EEEECSSCCCCSSBHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE------EEEEeCCCccCcccHHHH
Confidence 34567889999999999999999999999999 6799999999873 235555422111244443
Q ss_pred ccccccccC--------CCCCchhhhhHHH----------------hhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHH
Q 016139 96 AGLVRGAHE--------GQGLGNSFLSHIR----------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (394)
Q Consensus 96 ~gl~~~~~~--------~~~l~~~~l~~l~----------------~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i 150 (394)
.. ...... ..++. .++..+. .---.+.+++|+ .+|+++++| ||++++|+.
T Consensus 119 l~-~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~LD~~ 193 (290)
T 2bbs_A 119 II-GVSYDEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYLDVL 193 (290)
T ss_dssp HH-TTCCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHH
T ss_pred hh-CcccchHHHHHHHHHhChH-HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEE---CCcccCCHH
Confidence 32 100000 00000 0000000 000124667777 899999999 999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 151 ~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
....+...+ .+.+.. ...+.. .+|++..+. .||++ .+|++|+++..++.
T Consensus 194 ~~~~i~~~l---l~~~~~-~~tvii-vtHd~~~~~-~~d~i-~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 194 TEKEIFESC---VCKLMA-NKTRIL-VTSKMEHLK-KADKI-LILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHC---CCCCTT-TSEEEE-ECCCHHHHH-HSSEE-EEEETTEEEEEECH
T ss_pred HHHHHHHHH---HHHhhC-CCEEEE-EecCHHHHH-cCCEE-EEEECCeEEEeCCH
Confidence 864433211 000100 111212 239988775 59999 88999998876653
No 52
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.37 E-value=7.2e-14 Score=139.57 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
.+||+|+||||||||+|+|+|. ..|++|.|.+++.+... ..+.++...+.+++++|++|+.....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl-----------~~p~~GsI~~~g~~~t~--~~~v~q~~~~~~ltv~D~~g~~~~~~-- 135 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI-----------GNEEEGAAKTGVVEVTM--ERHPYKHPNIPNVVFWDLPGIGSTNF-- 135 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC-----------CTTSTTSCCCCC----C--CCEEEECSSCTTEEEEECCCGGGSSC--
T ss_pred EEEEECCCCCcHHHHHHHHhCC-----------CCccCceEEECCeecce--eEEeccccccCCeeehHhhcccchHH--
Confidence 9999999999999999999999 66888888888765432 13444444455799999999864211
Q ss_pred CCCchhhh---------------------hHHHhhhhHHh----hhhccCCCCeEEecCCCCCcchHHHHHHHHHHhHHH
Q 016139 106 QGLGNSFL---------------------SHIRAVDGIFH----VLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (394)
Q Consensus 106 ~~l~~~~l---------------------~~l~~~d~il~----vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~ 160 (394)
....++ +++..+.++.+ ++-+..+|+++++| ||++++|+...+..+..+.
T Consensus 136 --~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD---EPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 136 --PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN---EADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp --CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH---HHTTCCTTCCHHHHHHHHH
T ss_pred --HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC---cccccCCHHHHHHHHHHHH
Confidence 011111 11222222222 11112378888899 9999999887655544433
Q ss_pred HHHH-HHHHHH----HhhhcccchhhHH--HHHHHHHHHHHhcCCCcee
Q 016139 161 FMER-RIEDVE----KSMKRSNDKQLKI--EHELCQRVKAWLQDGKDVR 202 (394)
Q Consensus 161 ~l~k-~l~~~~----~~~~~~~~h~~~~--~~~l~~ri~~~L~~g~~~~ 202 (394)
.+.+ .+.+.. ..+..+ +|.+.+ ++.+|+++...|++|+..+
T Consensus 211 ~l~~~~l~~~g~~~~~iiliS-sh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLS-NKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECC-TTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEe-cCcCCccCHHHHHHHHHHhCccchhhH
Confidence 3311 111110 112223 387776 9999999999999998654
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.35 E-value=8e-14 Score=143.99 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=91.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCcc-ccceEEEecccc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV-PAFLEIHDIAGL 98 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~-~~~i~~~D~~gl 98 (394)
.++.|+++||+||||||||||+++|+|. ..|++|.|.+.+..+.+ .||... ....++.+....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~~-----~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSY-----KPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEEE-----ECSSCCCCCSSBHHHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeEe-----echhcccccCCCHHHHHHH
Confidence 3578999999999999999999999999 67999999988765533 333211 111222222211
Q ss_pred ccccc--CCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHH
Q 016139 99 VRGAH--EGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (394)
Q Consensus 99 ~~~~~--~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~ 161 (394)
..... .........++.+...+ --+.+++++ .+|+++++| ||++++|+.....+...+..
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i~~~l~~ 430 (538)
T 3ozx_A 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLD---QPSSYLDVEERYIVAKAIKR 430 (538)
T ss_dssp HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STTTTCCHHHHHHHHHHHHH
T ss_pred hhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHHHHHHH
Confidence 10000 00000000011110000 114566776 799999999 99999999987555443322
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 162 l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+.+ .....+.. .+|++..+..+|||+ .+|..+
T Consensus 431 l~~---~~g~tvi~-vsHdl~~~~~~aDri-~vl~~~ 462 (538)
T 3ozx_A 431 VTR---ERKAVTFI-IDHDLSIHDYIADRI-IVFKGE 462 (538)
T ss_dssp HHH---HTTCEEEE-ECSCHHHHHHHCSEE-EEEEEE
T ss_pred HHH---hCCCEEEE-EeCCHHHHHHhCCEE-EEEeCC
Confidence 211 11112212 249999999999999 777653
No 54
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.30 E-value=8.9e-13 Score=128.79 Aligned_cols=89 Identities=37% Similarity=0.658 Sum_probs=79.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
..|+|+|.+|||||||+|+|++..+.+++|||+|+.|+.|.+.+++. ..+.++|+||+..+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCcccccc
Confidence 46899999999999999999998877899999999999999988752 34899999999887777
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+.+++..|++.++.+|++++|+|+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s 247 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMS 247 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESS
T ss_pred cchhHHHHHHHHHhccEEEEEEECC
Confidence 7788889999999999999999885
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.29 E-value=1.7e-13 Score=141.68 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=92.9
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCcc-ccceEEEeccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV-PAFLEIHDIAGLV 99 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~-~~~i~~~D~~gl~ 99 (394)
++.|+++||+||||||||||+++|+|. ..|++|.|.+. .. ..|.||... ....++.++....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~-~~-----i~~v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKIEWD-LT-----VAYKPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBCCCCCC-CC-----EEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEC-ce-----EEEEecCCcCCCCCcHHHHHHhh
Confidence 468999999999999999999999999 66888888752 11 234444321 1122222222111
Q ss_pred --cccc---------CCCCCch---hhhhHHH-hhhhHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHH
Q 016139 100 --RGAH---------EGQGLGN---SFLSHIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (394)
Q Consensus 100 --~~~~---------~~~~l~~---~~l~~l~-~~d~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~ 163 (394)
.... ...++.. +....+. .-..-+.+++++ .+|+++++| ||++++|+...+.+...+..+.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD---EPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 372 DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp HHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHHHHHHHHH
Confidence 0000 0000000 0000000 000114566666 799999999 9999999999766555433221
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC--CCceecCCC
Q 016139 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGDW 206 (394)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~--g~~~~~~~~ 206 (394)
+ .....+.. .+|++..+..+||++ .+|.. |.....++.
T Consensus 449 ~---~~g~tvi~-vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 449 E---KNEKTALV-VEHDVLMIDYVSDRL-MVFEGEPGKYGRALPP 488 (538)
T ss_dssp H---HHTCEEEE-ECSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred H---hCCCEEEE-EeCCHHHHHHhCCEE-EEEeCCcceEeecCCH
Confidence 1 11122212 239999999999999 67764 555555554
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.28 E-value=3.3e-13 Score=152.82 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=113.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhh-------hccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~-------~~~~~~~~~ 87 (394)
+.....|++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||+..-
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe
Confidence 445677899999999999999999999999999 78999999999998765432 578888766
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhh----------------------------hHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d----------------------------~il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..++..+..- -..+..+.++.+. -.+.++||+ .+|++++||
T Consensus 1165 F~gTIreNI~~gld~~~~--sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLD 1242 (1321)
T 4f4c_A 1165 FDCSIAENIIYGLDPSSV--TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 1242 (1321)
T ss_dssp CSEEHHHHHSSSSCTTTS--CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred eCccHHHHHhccCCCCCC--CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 667777775543211100 0011111111111 125677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHH--HhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVE--KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~--~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|..++..+... +.+.. +++ ...+|.+..+. -||+| .+|++|+++..|+..
T Consensus 1243 ---EaTSaLD~~tE~~Iq~~-------l~~~~~~~Tv-I~IAHRLsTi~-~aD~I-~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1243 ---EATSALDTESEKVVQEA-------LDRAREGRTC-IVIAHRLNTVM-NADCI-AVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp ---SCCCSTTSHHHHHHHHH-------HTTTSSSSEE-EEECSSSSTTT-TCSEE-EEESSSSEEEEECHH
T ss_pred ---CccccCCHHHHHHHHHH-------HHHHcCCCEE-EEeccCHHHHH-hCCEE-EEEECCEEEEECCHH
Confidence 99999999886544322 21110 011 11138776654 48999 899999999887643
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.28 E-value=1.6e-13 Score=143.63 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCc-cccceEEEeccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV 99 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~-~~~~i~~~D~~gl~ 99 (394)
+..|+++||+||||||||||+++|+|. ..|++|.|.+. .. ..|.||.. .....++.++....
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~-~~-----i~~v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKVEWD-LT-----VAYKPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBSCCCCC-CC-----EEEECSSCCCCCSSBHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEEe-eE-----EEEEecCccCCCCCcHHHHHHhh
Confidence 468999999999999999999999999 66888888762 11 23445542 11223333322111
Q ss_pred -ccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHH
Q 016139 100 -RGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (394)
Q Consensus 100 -~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~ 163 (394)
............+++.+...+ .-+.+++++ .+|+++++| ||+++||+...+.+...+..+.
T Consensus 442 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD---EPt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 442 DSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp HHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCccCCCHHHHHHHHHHHHHHH
Confidence 000000000011111111111 114566776 799999999 9999999998755544433221
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC--CCceecCCC
Q 016139 164 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGDW 206 (394)
Q Consensus 164 k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~--g~~~~~~~~ 206 (394)
+ .....+.. .+|++..+..+||++ .+|.. |.....++.
T Consensus 519 ~---~~g~tvi~-vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 519 E---KNEKTALV-VEHDVLMIDYVSDRL-IVFEGEPGRHGRALPP 558 (607)
T ss_dssp H---HTTCEEEE-ECSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred H---hCCCEEEE-EeCCHHHHHHhCCEE-EEEcCCcceEEecCCH
Confidence 1 11112212 239999999999999 67764 555555554
No 58
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.25 E-value=1.1e-12 Score=126.26 Aligned_cols=189 Identities=22% Similarity=0.214 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecC-CcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~-g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
...|+|+|.||||||||+|.|+|....+ ++.|++|.....|....+ + .++.++||||+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIYEP 72 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCCcc
Confidence 3589999999999999999999998764 899999999998888776 4 35899999999764
Q ss_pred ccC---CCCCchhhhhHHHhhhhHHhhhhccCCC-----------------CeEEecCCCCCcchHHHH-HHHHHHhHHH
Q 016139 102 AHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDP-----------------DIIHVDDSVDPVRDLEVI-SAELRLKDIE 160 (394)
Q Consensus 102 ~~~---~~~l~~~~l~~l~~~d~il~vv~a~~~~-----------------~vl~ld~~~eP~~~ld~i-~~el~~~di~ 160 (394)
... +..+.......++.+|++++|+|+.... .++++- +..|.. +.+.....+.
T Consensus 73 ~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~------NK~Dl~~~~~~~~~~~~ 146 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVI------NKIDKIGPAKNVLPLID 146 (308)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEE------ECGGGSSSGGGGHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEE------ECccCCCCHHHHHHHHH
Confidence 310 1112223345678889988888875321 111111 122222 1111111111
Q ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhH-----HHHHHhh-hhhcccCEeeecccch
Q 016139 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNE 233 (394)
Q Consensus 161 ~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e-----~e~i~~~-~~~~~kp~~~~~N~~~ 233 (394)
.+.+.+......+..| +.....+.++.+.+...++++...+. ..+++.. .+++|+. .......++|.+.+..
T Consensus 147 ~l~~~~~~~~~i~~vS-A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i 225 (308)
T 3iev_A 147 EIHKKHPELTEIVPIS-ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKI 225 (308)
T ss_dssp HHHHHCTTCCCEEECB-TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEE
T ss_pred HHHHhccCCCeEEEEe-CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEe
Confidence 1221111001111122 25667788999999899988877654 3344432 2556664 5556778888876655
Q ss_pred hhh
Q 016139 234 KDY 236 (394)
Q Consensus 234 ~~~ 236 (394)
+.+
T Consensus 226 ~~~ 228 (308)
T 3iev_A 226 NEI 228 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.25 E-value=6.8e-13 Score=149.83 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=108.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... -.|.||....
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcc
Confidence 455667889999999999999999999999999 6799999999998775432 1467777543
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhh----------------------------hhHHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~----------------------------d~il~vv~a~-~~~~vl~ld 138 (394)
...++.|+..+....... . .....+.++.+ .-.+.++|++ .+|+++++|
T Consensus 1119 ~~~ti~eNi~~~~~~~~~-~-~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLD 1196 (1284)
T 3g5u_A 1119 FDCSIAENIAYGDNSRVV-S-YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196 (1284)
T ss_dssp CSSBHHHHHTCCCSSCCC-C-HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred ccccHHHHHhccCCCCCC-C-HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 344555554433211000 0 00000000000 0114566666 799999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
||++++|...+..+...+.. ... ...+ .-.+|++..+.. ||+| .+|++|+++..|+.
T Consensus 1197 ---EpTs~lD~~~~~~i~~~l~~----~~~-~~tv-i~isH~l~~i~~-~dri-~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1197 ---EATSALDTESEKVVQEALDK----ARE-GRTC-IVIAHRLSTIQN-ADLI-VVIQNGKVKEHGTH 1253 (1284)
T ss_dssp ---SCSSSCCHHHHHHHHHHHHH----HSS-SSCE-EEECSCTTGGGS-CSEE-EEEETBEEEEEECH
T ss_pred ---CCcccCCHHHHHHHHHHHHH----hCC-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999999986554333211 100 1111 112399988755 9999 89999999887753
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.25 E-value=9.3e-13 Score=148.72 Aligned_cols=170 Identities=16% Similarity=0.233 Sum_probs=108.0
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+. -.|.||....
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 475 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL 475 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCC
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCcc
Confidence 344567889999999999999999999999999 6799999999998765432 1477777433
Q ss_pred cceEEEecccccccccCCCCC--------chhhhhHHH-hhh---------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 88 AFLEIHDIAGLVRGAHEGQGL--------GNSFLSHIR-AVD---------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l--------~~~~l~~l~-~~d---------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
..-++.|+..+.........+ ...++..+. ..| -.+.++||+ .+|+++++| |
T Consensus 476 ~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLD---E 552 (1284)
T 3g5u_A 476 FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD---E 552 (1284)
T ss_dssp CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEE---S
T ss_pred CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 333555554433211100000 000000000 000 124566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceecCCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~ 206 (394)
|++.+|...+..+...+. + +.+ .+.+ .-.+|.+..+.. ||+| .+|++|+++..|+.
T Consensus 553 pts~LD~~~~~~i~~~l~---~-~~~-~~t~-i~itH~l~~i~~-~d~i-~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 553 ATSALDTESEAVVQAALD---K-ARE-GRTT-IVIAHRLSTVRN-ADVI-AGFDGGVIVEQGNH 608 (1284)
T ss_dssp TTCSSCHHHHHHHHHHHH---H-HHT-TSEE-EEECSCHHHHTT-CSEE-EECSSSCCCCEECH
T ss_pred CCCCCCHHHHHHHHHHHH---H-HcC-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 999999987654433221 1 100 1111 112399998866 9999 89999999877654
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.5e-12 Score=134.50 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=87.8
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEE-----------ecCCcchhhhh-hhccCCCc
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-----------NIPDERFEWLC-QLFKPKSA 85 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i-----------~v~g~~~~~l~-~~~~~~~~ 85 (394)
+-.+++|+++||+||||||||||+|+|+|. ..|+.|.+ .+.|.++.... ..+.....
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl-----------~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 87 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGE-----------IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCC
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccc
Confidence 344668999999999999999999999999 66888877 34454432211 10000000
Q ss_pred cccceEEEecc-ccccc-------ccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 86 VPAFLEIHDIA-GLVRG-------AHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 86 ~~~~i~~~D~~-gl~~~-------~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
+...++.++.. .+..+ ...........++.+...+ -.+.+++|+ .+|+++++| |
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD---E 164 (538)
T 3ozx_A 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD---Q 164 (538)
T ss_dssp EEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---S
T ss_pred hhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---C
Confidence 00000000000 00000 0000000111111111100 114566776 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCc
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~ 200 (394)
|++.||+.....+...+..+ .+ ...+.. .+|++..+..+||++ .+|..|..
T Consensus 165 Pts~LD~~~~~~l~~~l~~l----~~-g~tii~-vsHdl~~~~~~~d~i-~vl~~~~~ 215 (538)
T 3ozx_A 165 PSSYLDVRERMNMAKAIREL----LK-NKYVIV-VDHDLIVLDYLTDLI-HIIYGESS 215 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHH----CT-TSEEEE-ECSCHHHHHHHCSEE-EEEEEETT
T ss_pred CcccCCHHHHHHHHHHHHHH----hC-CCEEEE-EEeChHHHHhhCCEE-EEecCCcc
Confidence 99999998865443332222 11 122212 239999999999998 77765543
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.2e-12 Score=136.90 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcC--CC
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GK 199 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~--g~ 199 (394)
+.+++++ .+|+++++| ||++++|+.....+...+..+. ......+.. .+|++..+..+|||+ .+|+. |+
T Consensus 476 v~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i~~ll~~l~---~~~g~tvii-vtHdl~~~~~~aDrv-ivl~~~~g~ 547 (608)
T 3j16_B 476 VAIVLALGIPADIYLID---EPSAYLDSEQRIICSKVIRRFI---LHNKKTAFI-VEHDFIMATYLADKV-IVFEGIPSK 547 (608)
T ss_dssp HHHHHHTTSCCSEEEEC---CTTTTCCHHHHHHHHHHHHHHH---HHHTCEEEE-ECSCHHHHHHHCSEE-EECEEETTT
T ss_pred HHHHHHHHhCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHH---HhCCCEEEE-EeCCHHHHHHhCCEE-EEEeCCCCe
Confidence 4566776 799999999 9999999988655544332221 111222212 249999999999999 67765 77
Q ss_pred ceecCCCC
Q 016139 200 DVRLGDWK 207 (394)
Q Consensus 200 ~~~~~~~~ 207 (394)
++..++..
T Consensus 548 ~~~~g~p~ 555 (608)
T 3j16_B 548 NAHARAPE 555 (608)
T ss_dssp EEECCCCE
T ss_pred EEecCChH
Confidence 77766543
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.8e-12 Score=134.11 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=46.5
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
+.+++|+ .+|+++++| ||++.||+.....+...+..+.+ -...+.. .+|++..+..+||++ .+|..+...
T Consensus 230 v~iAraL~~~p~llllD---EPts~LD~~~~~~l~~~l~~l~~----~g~tvi~-vtHdl~~~~~~~drv-~vl~~~~~~ 300 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFD---EPSSYLDVKQRLNAAQIIRSLLA----PTKYVIC-VEHDLSVLDYLSDFV-CIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHSCCSEEEEE---CTTTTCCHHHHHHHHHHHHGGGT----TTCEEEE-ECSCHHHHHHHCSEE-EEEESCTTT
T ss_pred HHHHHHHHhCCCEEEEE---CcccCCCHHHHHHHHHHHHHHHh----CCCEEEE-EeCCHHHHHHhCCEE-EEEeCCccc
Confidence 4566666 799999999 99999999886444333222111 0111111 239999999999999 777766543
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.16 E-value=4.4e-12 Score=143.61 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=115.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhh-------hhccCCCccc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~-------~~~~~~~~~~ 87 (394)
+.....+++|+.++||||+|||||||+++|.|. .+|++|.|.++|.++..+. -.|.||+..-
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L 503 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL 503 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCccee
Confidence 445667899999999999999999999999999 6899999999998765432 2588888766
Q ss_pred cceEEEecccccccccCCCCCchhhhhHHHhhhh----------------------------HHhhhhcc-CCCCeEEec
Q 016139 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDIIHVD 138 (394)
Q Consensus 88 ~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~----------------------------il~vv~a~-~~~~vl~ld 138 (394)
..-++.|+..++..... ..+..+.++.+.+ -+.++||+ .+|++++||
T Consensus 504 f~~TI~eNI~~g~~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLD 579 (1321)
T 4f4c_A 504 FNCTIEENISLGKEGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD 579 (1321)
T ss_dssp CSEEHHHHHHTTCTTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eCCchhHHHhhhcccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Confidence 67788887766532111 1122222222211 15677887 899999999
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHH--hhhcccchhhHHHHHHHHHHHHHhcCCCceecCCCC
Q 016139 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEK--SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (394)
Q Consensus 139 ~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~--~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~~~~~ 207 (394)
||++.+|...+..+..- +..+.+ +. .-.+|.+..+ .-||+| .+|++|+++..|+.+
T Consensus 580 ---E~tSaLD~~te~~i~~~-------l~~~~~~~T~-iiiaHrls~i-~~aD~I-ivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 580 ---EATSALDAESEGIVQQA-------LDKAAKGRTT-IIIAHRLSTI-RNADLI-ISCKNGQVVEVGDHR 637 (1321)
T ss_dssp ---STTTTSCTTTHHHHHHH-------HHHHHTTSEE-EEECSCTTTT-TTCSEE-EEEETTEEEEEECHH
T ss_pred ---cccccCCHHHHHHHHHH-------HHHHhCCCEE-EEEcccHHHH-HhCCEE-EEeeCCeeeccCCHH
Confidence 99999998875443332 222211 11 1123887755 458998 889999999887643
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.14 E-value=9.9e-12 Score=128.48 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=45.5
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
+.+++|+ .+|+++++| ||++.||+...+.+...+..+. +....+.. .+|++..+..+||++ .+|..+
T Consensus 167 v~iAraL~~~P~lLlLD---EPTs~LD~~~~~~l~~~L~~l~----~~g~tvi~-vsHd~~~~~~~~dri-~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFD---EPSSYLDIRQRLNAARAIRRLS----EEGKSVLV-VEHDLAVLDYLSDII-HVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEE---STTTTCCHHHHHHHHHHHHHHH----HTTCEEEE-ECSCHHHHHHHCSEE-EEEEEE
T ss_pred HHHHHHHhcCCCEEEEE---CCcccCCHHHHHHHHHHHHHHH----hcCCEEEE-EeCCHHHHHHhCCEE-EEEcCc
Confidence 4556666 799999999 9999999988655444332221 11112212 239999999999999 677654
No 66
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.12 E-value=9.8e-12 Score=130.09 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=86.5
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEE---------ecCCcchhhhh-h--------hcc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC-Q--------LFK 81 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i---------~v~g~~~~~l~-~--------~~~ 81 (394)
.+..|+++||+||||||||||+++|+|. ..|++|.+ .+.|..+.... . .+.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-----------l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQ-----------LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 5789999999999999999999999999 55777764 34454432210 0 111
Q ss_pred CCCc--cccc--eEEEecccccccccCCCCCchhhhhHHHhhh--------------hHHhhhhcc-CCCCeEEecCCCC
Q 016139 82 PKSA--VPAF--LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (394)
Q Consensus 82 ~~~~--~~~~--i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d--------------~il~vv~a~-~~~~vl~ld~~~e 142 (394)
++.. .+.. .++.+..... .........++.+...+ -.+.+++|+ .+|+++++| |
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD---E 254 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKV----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD---E 254 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHT----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---C
T ss_pred echhhhchhhccccHHHHhhhh----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---C
Confidence 1110 0000 0111110000 00000111111111100 114566666 799999999 9
Q ss_pred CcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 016139 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (394)
Q Consensus 143 P~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g 198 (394)
|++.||+...+.+...+..+.+ ....+.. .+|++..+..+||++ .+|..+
T Consensus 255 PTs~LD~~~~~~l~~~L~~l~~----~g~tvIi-vsHdl~~~~~~adri-~vl~~~ 304 (607)
T 3bk7_A 255 PSSYLDIRQRLKVARVIRRLAN----EGKAVLV-VEHDLAVLDYLSDVI-HVVYGE 304 (607)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH----TTCEEEE-ECSCHHHHHHHCSEE-EEEESC
T ss_pred CcccCCHHHHHHHHHHHHHHHh----cCCEEEE-EecChHHHHhhCCEE-EEECCC
Confidence 9999999987555444332211 1112212 239999999999999 777654
No 67
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.09 E-value=1.4e-11 Score=118.16 Aligned_cols=188 Identities=19% Similarity=0.173 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..++|+|.||||||||+|.|+|....+ ++.|+||.....|.+...+ .++.++||||+.....
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhh
Confidence 379999999999999999999988754 7899999988887766543 4589999999875332
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhccCCCC-----eE-EecCC--CCCc----chHHHHHHHHHHhHHHHHHHHHHHHH
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDS--VDPV----RDLEVISAELRLKDIEFMERRIEDVE 170 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~~~~~-----vl-~ld~~--~eP~----~~ld~i~~el~~~di~~l~k~l~~~~ 170 (394)
. ...+.......++.+|++++|+|+.+... ++ .+... .-|. +.+|....... +......+.
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------~~~~~~~~~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE------AMKAYHELL 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH------HHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH------HHHHHHHhc
Confidence 1 00112223445677888888877742211 00 00000 0111 12222211000 111111110
Q ss_pred ---HhhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCC-ChhH-----HHHHHhh-hhhcccCEeeecccchhhh
Q 016139 171 ---KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDW-KAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDY 236 (394)
Q Consensus 171 ---~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~-~~~e-----~e~i~~~-~~~~~kp~~~~~N~~~~~~ 236 (394)
..+..| +.....+..+.+.+...++++...++ +.+ ++.+ .+.+|+. .......++|.+.+..+.+
T Consensus 145 ~~~~~~~iS-A~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~ 220 (301)
T 1wf3_A 145 PEAEPRMLS-ALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEV 220 (301)
T ss_dssp TTSEEEECC-TTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEE
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEE
Confidence 111122 25667888888888777877766554 334 3332 2445544 3445667777776655444
No 68
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.08 E-value=1.3e-11 Score=118.40 Aligned_cols=186 Identities=20% Similarity=0.162 Sum_probs=102.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc-cc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV-RG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~-~~ 101 (394)
+.+++|+|+||||||||+|+|+|....+ ++.|++|.....|.+...+ .++.++||||+. ..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~ 70 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEE 70 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccc
Confidence 3589999999999999999999987644 7889999888888776553 358899999986 21
Q ss_pred ccC-CCCCchhhhhHHHhhhhHHhhhhc----------------cCCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHH
Q 016139 102 AHE-GQGLGNSFLSHIRAVDGIFHVLRA----------------FEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (394)
Q Consensus 102 ~~~-~~~l~~~~l~~l~~~d~il~vv~a----------------~~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k 164 (394)
... ...+.......++.+|+++.|+++ ...|.++++. ..|+...-+.+. ..+..+.+
T Consensus 71 ~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlN-K~D~~~~~~~~~-----~~l~~l~~ 144 (301)
T 1ega_A 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN-KVDNVQEKADLL-----PHLQFLAS 144 (301)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEE-STTTCCCHHHHH-----HHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEE-CcccCccHHHHH-----HHHHHHHH
Confidence 100 000000111223334444433332 2345555442 445433111111 11111111
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec-CCCChhH-----HHHHHhh-hhhcccCEeeecccchh
Q 016139 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEK 234 (394)
Q Consensus 165 ~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~-~~~~~~e-----~e~i~~~-~~~~~kp~~~~~N~~~~ 234 (394)
.+. +...+..| +|....+..+++.+...++.+...+. +.+++.. .+.+|+. ......+++|.+.+..+
T Consensus 145 ~~~-~~~~i~iS-A~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 145 QMN-FLDIVPIS-AETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp TSC-CSEEEECC-TTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEE
T ss_pred hcC-cCceEEEE-CCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 000 00122223 37888899999999888887776654 3444432 1344444 34455666666554433
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.06 E-value=1.2e-11 Score=134.57 Aligned_cols=44 Identities=32% Similarity=0.372 Sum_probs=39.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (394)
.....+..|+++||+||||||||||+++|+|. ..|++|.|.+.+
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 34566889999999999999999999999999 679999999875
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.06 E-value=1.8e-10 Score=108.98 Aligned_cols=61 Identities=34% Similarity=0.510 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.+++|+|.+|||||||+|+|+|....++++|++|.++..+.+.+.+. .+.++|+||.....
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC-----------------EEEEEECCCCSCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC-----------------ceEEEECcCCCccc
Confidence 58999999999999999999999766689999999999999888753 47899999987543
No 71
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.02 E-value=9.3e-11 Score=115.43 Aligned_cols=88 Identities=30% Similarity=0.507 Sum_probs=54.5
Q ss_pred CCCcE-EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 22 SSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 22 ~~g~~-vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
+.+.. ++|+|+||||||||+|+|+|.....+++||+|++|..+.+.++|. .+.++|++|+..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-----------------~v~l~DT~G~i~ 238 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-----------------KIMLVDTVGFIR 238 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-----------------EEEEEECCCBCS
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-----------------EEEEEeCCCchh
Confidence 34555 999999999999999999999876789999999999999999873 378999999865
Q ss_pred cccCCCCCchh---hhhHHHhhhhHHhhhhc
Q 016139 101 GAHEGQGLGNS---FLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 101 ~~~~~~~l~~~---~l~~l~~~d~il~vv~a 128 (394)
.... .+... .+..+..+|++++|+|+
T Consensus 239 ~lp~--~lve~f~~tl~~~~~aD~il~VvD~ 267 (364)
T 2qtf_A 239 GIPP--QIVDAFFVTLSEAKYSDALILVIDS 267 (364)
T ss_dssp SCCG--GGHHHHHHHHHGGGGSSEEEEEEET
T ss_pred cCCH--HHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 3211 11122 23345566666666554
No 72
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.00 E-value=3.7e-10 Score=106.64 Aligned_cols=68 Identities=26% Similarity=0.227 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----hhhccCCC-ccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~~~~-~~~~~i~~~D~~gl~ 99 (394)
..+||+||||||||||+|+|+|. ..|++|.+.+.|.++... ...+.+|. .+...++++|++++.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS-----------QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH-----------HC------------CCCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 47899999999999999999998 678999999888655321 12455665 455678999999997
Q ss_pred cccc
Q 016139 100 RGAH 103 (394)
Q Consensus 100 ~~~~ 103 (394)
....
T Consensus 72 ~~~~ 75 (270)
T 3sop_A 72 DQIN 75 (270)
T ss_dssp CCSB
T ss_pred hhcc
Confidence 6443
No 73
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.99 E-value=2.5e-10 Score=99.80 Aligned_cols=90 Identities=24% Similarity=0.310 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+.+++|+|+||||||||+|.|++.... ++++|++|.....+.+.+++. .+.++|+||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM-----------------PLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe-----------------EEEEEECCCcccc
Confidence 4689999999999999999999998653 478999999988899988763 3789999998543
Q ss_pred ccCCCCC-chhhhhHHHhhhhHHhhhhcc
Q 016139 102 AHEGQGL-GNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 102 ~~~~~~l-~~~~l~~l~~~d~il~vv~a~ 129 (394)
....... .......++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~ 94 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGT 94 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETT
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 2110000 011123456666666665553
No 74
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.92 E-value=4.9e-10 Score=118.82 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=48.7
Q ss_pred Hhhhhcc-CCCC--eEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh----
Q 016139 123 FHVLRAF-EDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL---- 195 (394)
Q Consensus 123 l~vv~a~-~~~~--vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L---- 195 (394)
+.+++|+ .+|+ ++++| ||+++||+.....+...+..+. .....+.. .+|++..+. .||++ .+|
T Consensus 211 v~iArAL~~~p~~~lLlLD---EPtsgLD~~~~~~l~~~l~~l~----~~g~tvi~-vtHd~~~~~-~~d~i-i~l~~g~ 280 (670)
T 3ux8_A 211 IRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLIATLKSMR----DLGNTLIV-VEHDEDTML-AADYL-IDIGPGA 280 (670)
T ss_dssp HHHHHHHHTCCCSCEEEEE---CTTTTCCGGGHHHHHHHHHHHH----HTTCEEEE-ECCCHHHHH-HCSEE-EEECSSS
T ss_pred HHHHHHHhhCCCCCEEEEE---CCccCCCHHHHHHHHHHHHHHH----HcCCEEEE-EeCCHHHHh-hCCEE-EEecccc
Confidence 5667777 6777 99999 9999999988655444332221 11112212 249998765 59998 666
Q ss_pred --cCCCceecCCC
Q 016139 196 --QDGKDVRLGDW 206 (394)
Q Consensus 196 --~~g~~~~~~~~ 206 (394)
++|+++..++.
T Consensus 281 ~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 281 GIHGGEVVAAGTP 293 (670)
T ss_dssp GGGCCSEEEEECH
T ss_pred cccCCEEEEecCH
Confidence 78888877653
No 75
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.92 E-value=2.3e-09 Score=101.02 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------ccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p------~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
..++|+|.+|+|||||+|+|++......++| ..|+.++.....+... .....+.++||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECCCc
Confidence 5799999999999999999999877665554 4555555554444321 01125899999998
Q ss_pred ccc
Q 016139 99 VRG 101 (394)
Q Consensus 99 ~~~ 101 (394)
...
T Consensus 76 ~d~ 78 (274)
T 3t5d_A 76 GDA 78 (274)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 76
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.90 E-value=6.9e-10 Score=103.23 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCc--cccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPF--CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~--~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|+|+|.+|||||||+|+|+|.....+.+++ +|..+..+.+.+.+. .+.++||||+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~liDTPG~~~~ 83 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-----------------HVEVVDTPDIFSS 83 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE-----------------EEEEEECCSCSST
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc-----------------EEEEEECCCCCCC
Confidence 468999999999999999999998876655544 788888888887763 4899999999744
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.8e-10 Score=116.67 Aligned_cols=42 Identities=24% Similarity=0.124 Sum_probs=37.3
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcee-E-EecCC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-R-VNIPD 70 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G-~-i~v~g 70 (394)
...+..|++++|+||||||||||+++|+|+ ..|+.| . |.+++
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl-----------~~p~~G~~pI~vdg 175 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSY-----------ALKFNAYQPLYINL 175 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHT-----------THHHHCCCCEEEEC
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCc-----------ccccCCceeEEEcC
Confidence 345778999999999999999999999999 568899 7 88876
No 78
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.88 E-value=9.9e-10 Score=101.18 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=47.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--ccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP--FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p--~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|+|+|++|||||||+|+|+|.....+..| ++|..+..+.+.+.+. .+.++||||+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~ 91 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----------------ELVVVDTPGIFDT 91 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE-----------------EEEEEECCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc-----------------eEEEEECCCccCC
Confidence 46899999999999999999999877666666 7888888888888763 4899999999765
Q ss_pred c
Q 016139 102 A 102 (394)
Q Consensus 102 ~ 102 (394)
.
T Consensus 92 ~ 92 (239)
T 3lxx_A 92 E 92 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 79
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.88 E-value=9.7e-10 Score=99.40 Aligned_cols=62 Identities=26% Similarity=0.233 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~-~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|+|+|.+|||||||+|.|++.. . ..+++|++|..+....+...+ ...+.++|+||+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCcc
Confidence 4689999999999999999999986 2 457888888776655554111 135899999997643
No 80
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.87 E-value=5.6e-10 Score=113.70 Aligned_cols=91 Identities=32% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc-
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV- 99 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~- 99 (394)
+.+.+|+|+|+||||||||+|.|++... .++++|+||+++..+.+.++|. .+.++||||+.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~-----------------~~~l~DTaG~~~ 303 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI-----------------LFRIVDTAGVRS 303 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE-----------------EEEEEESSCCCS
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe-----------------EEEEEECCCccc
Confidence 3567999999999999999999999864 4689999999999999998873 38999999997
Q ss_pred ccccCCCCCch-hhhhHHHhhhhHHhhhhcc
Q 016139 100 RGAHEGQGLGN-SFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 100 ~~~~~~~~l~~-~~l~~l~~~d~il~vv~a~ 129 (394)
......+.++. ..+..++.+|++++|+|+.
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 334 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDAS 334 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETT
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCC
Confidence 54443334432 3467788999999988874
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=1.1e-10 Score=127.19 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=50.4
Q ss_pred Hhhhhcc-CCCCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCCce
Q 016139 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
+.+++++ .+|+++++| ||+++||+...+.+...+ ......+.. .+|++..+..+|+++ .+|++|+++
T Consensus 557 vaLArAL~~~P~lLLLD---EPTs~LD~~~~~~l~~~L-------~~~g~tvIi-vSHdl~~l~~~adri-i~L~~G~iv 624 (986)
T 2iw3_A 557 LALARAVLRNADILLLD---EPTNHLDTVNVAWLVNYL-------NTCGITSIT-ISHDSVFLDNVCEYI-INYEGLKLR 624 (986)
T ss_dssp HHHHHHHHTTCSEEEEE---STTTTCCHHHHHHHHHHH-------HHSCSEEEE-ECSCHHHHHHHCSEE-EEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEE---CCccCCCHHHHHHHHHHH-------HhCCCEEEE-EECCHHHHHHhCCEE-EEEECCeee
Confidence 4455565 699999999 999999999864443322 111112212 239999999999999 888999986
Q ss_pred -ecCCC
Q 016139 202 -RLGDW 206 (394)
Q Consensus 202 -~~~~~ 206 (394)
+.|+.
T Consensus 625 ~~~G~~ 630 (986)
T 2iw3_A 625 KYKGNF 630 (986)
T ss_dssp EEESCH
T ss_pred cCCCCH
Confidence 45654
No 82
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.85 E-value=3.4e-10 Score=106.01 Aligned_cols=60 Identities=32% Similarity=0.511 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+++|+|.+|||||||||.|+|....++++|++|.+...|.+.+.+. .+.++|+||.....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~-----------------~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH-----------------LIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE-----------------EEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe-----------------EEEEEeCCCccccc
Confidence 7899999999999999999999777789999999999999988763 48999999986543
No 83
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.85 E-value=1.2e-08 Score=90.79 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCCCCCccccc-CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccc
Q 016139 11 APAERPILGRF-SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (394)
Q Consensus 11 ~~~~~~~~~~i-~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~ 89 (394)
+++..+..+.. ....+++|+|++|||||||+|.|++.... ..++.++.......+.+.+. ...
T Consensus 10 ~~~~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~ 73 (201)
T 3oes_A 10 GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD---------------EFH 73 (201)
T ss_dssp -------------CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC-------------------CEE
T ss_pred ccccCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE---------------EEE
Confidence 34444444432 34578999999999999999999987543 22332222222233333322 234
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+.++|++|...... +. ...++.+|+++.|+++
T Consensus 74 ~~l~Dt~G~~~~~~----~~---~~~~~~~d~~i~v~d~ 105 (201)
T 3oes_A 74 LHLVDTAGQDEYSI----LP---YSFIIGVHGYVLVYSV 105 (201)
T ss_dssp EEEEEECCCCTTCC----CC---GGGTTTCCEEEEEEET
T ss_pred EEEEECCCccchHH----HH---HHHHhcCCEEEEEEeC
Confidence 78999999643321 11 1233556666555443
No 84
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.81 E-value=1.3e-09 Score=102.91 Aligned_cols=59 Identities=34% Similarity=0.515 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|+||||||||||.|+|....++++|++|.++..|.+.. + ..+.++|+||....
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCcc
Confidence 58999999999999999999998777899999999998887654 3 24899999998643
No 85
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.80 E-value=1.8e-08 Score=87.17 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++|+|++|||||||++.|++........|..|.......+.+++.. ..+.++|+||......
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 73 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERFRT- 73 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGCSS-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhhhh-
Confidence 589999999999999999999886655566666666666666666532 2488999999543221
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+ ....++.+|+++.|+++
T Consensus 74 ---~---~~~~~~~~d~~i~v~d~ 91 (181)
T 3tw8_B 74 ---I---TSTYYRGTHGVIVVYDV 91 (181)
T ss_dssp ---C---CGGGGTTCSEEEEEEET
T ss_pred ---h---HHHHhccCCEEEEEEEC
Confidence 1 11334556666655443
No 86
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=89.04 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++|+|++|||||||++.|++........|..|.......+.+++.. ..+.++|++|......
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 80 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRT- 80 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGCT-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhhhh-
Confidence 589999999999999999999876655666666666666667766532 2488999999543211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+|+
T Consensus 81 ------~~~~~~~~~d~~i~v~d~ 98 (196)
T 3tkl_A 81 ------ITSSYYRGAHGIIVVYDV 98 (196)
T ss_dssp ------THHHHHTTCSEEEEEEET
T ss_pred ------hHHHHHhhCCEEEEEEEC
Confidence 122344566666665444
No 87
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.79 E-value=1.8e-09 Score=108.84 Aligned_cols=87 Identities=31% Similarity=0.383 Sum_probs=57.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
+++|||.||+|||||||.|+|.... ++++|++|++...+.+.+.|. .+.++||+|+......
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK-----------------TFKLVDTCGVFDNPQD 65 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE-----------------EEEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe-----------------EEEEEECCCccccccc
Confidence 6899999999999999999998765 489999999999999999874 3789999998753221
Q ss_pred C--CCCchhhhhHHHhhhhHHhhhhcc
Q 016139 105 G--QGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 105 ~--~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
. ..+..+....++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 112233445678899998888874
No 88
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.76 E-value=3.9e-08 Score=86.47 Aligned_cols=47 Identities=26% Similarity=0.207 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (394)
..+|+|+|++|||||||+|.|++........|..+.......+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLND 53 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecC
Confidence 46899999999999999999998754332222222223333455554
No 89
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.76 E-value=3.3e-08 Score=84.75 Aligned_cols=61 Identities=28% Similarity=0.219 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++++|++|||||||++.+++........+..|.......+.+++.. ..+.++|++|...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE---------------EEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccc
Confidence 478999999999999999999876544444555555566666666542 3478999998754
No 90
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.76 E-value=6.4e-08 Score=82.37 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||++.+++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~-- 66 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA-- 66 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CH--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcchhH--
Confidence 5899999999999999999998653 2344444433333444454422 248899999954321
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+++
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~ 85 (168)
T 1u8z_A 67 -----AIRDNYFRSGEGFLCVFSI 85 (168)
T ss_dssp -----HHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHhhcCCEEEEEEEC
Confidence 1112334556666555443
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.75 E-value=5.7e-08 Score=84.44 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|++|||||||++.+++... ...++.++.......+.+++.. ..+.++|+||....
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCTT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchhh
Confidence 5899999999999999999996542 3444444433334455555432 24789999997543
No 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.75 E-value=6e-08 Score=86.01 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+|+|+|++|||||||++.+++... ..+++.++.......+.+++.. ..+.++|+||..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 73 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQE 73 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChh
Confidence 36899999999999999999998653 3445555544444455555432 248899999954
No 93
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.75 E-value=4.5e-08 Score=83.59 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||+|.|++........|..+.+.....+.+++.. ..+.++|+||......
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 69 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFDA- 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTTC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHHH-
Confidence 589999999999999999999875433333333333334445554422 3589999999643211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+ ....++.+|+++.|+++
T Consensus 70 ---~---~~~~~~~~d~~i~v~d~ 87 (168)
T 1z2a_A 70 ---I---TKAYYRGAQACVLVFST 87 (168)
T ss_dssp ---C---CHHHHTTCCEEEEEEET
T ss_pred ---H---HHHHhcCCCEEEEEEEC
Confidence 1 12334556666555443
No 94
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.75 E-value=5.3e-08 Score=84.92 Aligned_cols=81 Identities=25% Similarity=0.288 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||+|.|++... ..+++.++.......+.+++.. ..+.++|+||......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 67 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA- 67 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---CT-
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHHH-
Confidence 5899999999999999999998653 3455555554445555565532 2478899999543211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 68 ------~~~~~~~~~~~~i~v~d~ 85 (189)
T 4dsu_A 68 ------MRDQYMRTGEGFLCVFAI 85 (189)
T ss_dssp ------THHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHhcCCEEEEEEEC
Confidence 112334556666554443
No 95
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.75 E-value=7.8e-09 Score=78.62 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=51.8
Q ss_pred cEEeecCCCCCeeeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEE
Q 016139 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 383 (394)
Q Consensus 304 li~~fT~~~~e~raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~ 383 (394)
-|.+|| |+ -+...+|+|+|+.|+|..||+|+.+.|+.|.|- | ++++.+|.+++||+|+
T Consensus 7 ~i~v~t--P~-G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-----------------G--~~v~L~~~L~~gd~Ve 64 (78)
T 3hvz_A 7 EVFVFT--PK-GDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-----------------G--RIVPIDYKVKTGEIID 64 (78)
T ss_dssp EEEEEC--TT-SCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-----------------T--EEECTTCBCCTTCBEE
T ss_pred eEEEEC--CC-CCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-----------------C--EEcCCCcccCCCCEEE
Confidence 355666 23 266789999999999999999999999999863 5 7899999999999999
Q ss_pred EEE
Q 016139 384 FKF 386 (394)
Q Consensus 384 ~~f 386 (394)
|.-
T Consensus 65 Iit 67 (78)
T 3hvz_A 65 VLT 67 (78)
T ss_dssp EEE
T ss_pred EEc
Confidence 963
No 96
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.74 E-value=4.5e-09 Score=105.88 Aligned_cols=60 Identities=40% Similarity=0.525 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+++|+|+||||||||+|.|+|.... ++++|++|.++..|.+.++|. .+.++|++|+..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~-----------------~~~l~Dt~G~~~ 240 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR-----------------KYVFVDTAGLRR 240 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE-----------------EEEESSCSCC--
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE-----------------EEEEEECCCCcc
Confidence 469999999999999999999998754 489999999999999999874 378999999854
No 97
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.74 E-value=2.4e-08 Score=86.27 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|||||||+|.+++........|..+.......+.+++.. ..+.++|+||..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 67 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEE---------------EEEEEEECCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEeCCCch
Confidence 589999999999999999999875433333333333334445555431 248999999953
No 98
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.74 E-value=2.6e-08 Score=85.40 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+++++|++|||||||++.+++........|..+.......+.+++.. ..+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR---------------VNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCE---------------EEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 3589999999999999999999875433333333333334455555432 247899999954
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.74 E-value=1.4e-08 Score=87.57 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|+||||||||+|.|+|.....+++|++|..+..+.+.+++. .+.++|+||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE-----------------EEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc-----------------EEEEEECCCcccC
Confidence 57999999999999999999998766688899899988888877652 4899999998653
No 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.74 E-value=7.7e-09 Score=90.83 Aligned_cols=57 Identities=30% Similarity=0.254 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
-.+++|+|++|||||||+|.|++.... ..+.+++|..+..... . ..+.++|+||+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV--N------------------SKYYFVDLPGYGY 80 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE--T------------------TTEEEEECCCBSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE--C------------------CcEEEEECCCCcc
Confidence 458999999999999999999998642 3566666655443322 1 2478999999754
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.73 E-value=8.4e-08 Score=83.38 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|++|||||||++.|++... ...++.++.......+.+++.. ..+.++|+||.....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~- 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDYA- 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCCH-
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCcccH-
Confidence 36899999999999999999998653 2344444433333444454421 248899999954311
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+++
T Consensus 81 ------~~~~~~~~~~d~~i~v~d~ 99 (187)
T 2a9k_A 81 ------AIRDNYFRSGEGFLCVFSI 99 (187)
T ss_dssp ------HHHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHhccCCEEEEEEEC
Confidence 1112334556666554443
No 102
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=1e-09 Score=96.16 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.4
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Lt 45 (394)
...++.|++++|+||||||||||++++.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 3468899999999999999999999543
No 103
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.72 E-value=6.3e-09 Score=101.00 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=38.0
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
..+..|+.++|+||||||||||+++|+|. +.|+.|.|.+.|.+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~-----------~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEF-----------IPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGG-----------SCTTSCEEEEESSC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCcEEEECCee
Confidence 34567999999999999999999999999 67899999998853
No 104
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.71 E-value=2.1e-07 Score=79.02 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|||||||++.+++.... ..++.++.......+.+++.. ..+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~ 62 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTE 62 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEE---------------EEEEEEECCCch
Confidence 58999999999999999999976432 223322222223334444321 348899999953
No 105
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.70 E-value=2.5e-08 Score=88.93 Aligned_cols=85 Identities=22% Similarity=0.224 Sum_probs=48.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+|+|+|++|||||||++.|++........|..+.......+.+++.. ..+.++|++|....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERF 87 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhH
Confidence 334689999999999999999999875544444444444445555555432 35899999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. + ....++.+|+++.|+|+
T Consensus 88 ~~----~---~~~~~~~~d~~i~v~d~ 107 (200)
T 2o52_A 88 RS----V---TRSYYRGAAGALLVYDI 107 (200)
T ss_dssp SC----C---CHHHHTTCSEEEEEEET
T ss_pred HH----H---HHHHhccCCEEEEEEEC
Confidence 11 1 12344566666665544
No 106
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.70 E-value=5.1e-08 Score=85.71 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
-.+++|+|++|+|||||++.|++........|..+.......+.+.+.. ..+.++|++|......
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 86 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR---------------IKLQIWDTAGQERYRT 86 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEE---------------EEEEEEECCSCCSSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeE---------------EEEEEEeCCCcHHHhh
Confidence 3689999999999999999999875433222222222222333333321 3589999999643211
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 87 -------~~~~~~~~~d~ii~v~d~ 104 (189)
T 2gf9_A 87 -------ITTAYYRGAMGFLLMYDI 104 (189)
T ss_dssp -------SGGGGGTTCSEEEEEEET
T ss_pred -------hHHHhccCCCEEEEEEEC
Confidence 112334556666555443
No 107
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.70 E-value=3.8e-08 Score=85.21 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|||||||++.+++........|..+.+.....+.+++.. ...+.++|+||..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQE 69 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCCh
Confidence 589999999999999999999875544444444455555566555211 2358999999954
No 108
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.69 E-value=4e-08 Score=86.91 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|++|+|||||++.|++........|..+.+.....+.+++.. ..+.++|++|.....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~- 89 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERFN- 89 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGGGH-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHHHH-
Confidence 3589999999999999999999875433333433333444455555432 248999999953211
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+|+
T Consensus 90 ------~~~~~~~~~~d~iilV~D~ 108 (192)
T 2il1_A 90 ------SITSAYYRSAKGIILVYDI 108 (192)
T ss_dssp ------HHHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHHhcCCCEEEEEEEC
Confidence 1123445666766665544
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.68 E-value=2.9e-09 Score=99.69 Aligned_cols=60 Identities=32% Similarity=0.481 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|.+|||||||||.|+|.....+++|++|.....|.+...+ ..+.++|+||....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCcc
Confidence 5799999999999999999999877778999999998888887755 24899999998654
No 110
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.68 E-value=1.3e-07 Score=80.51 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||+|.+++.... ..++.++.......+.+++. ...+.++|+||......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~~- 66 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTEQFTA- 66 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSCSSTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCE---------------EEEEEEEECCChHHHHH-
Confidence 57999999999999999999986432 22222222112222333332 13488999999643211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 67 ------~~~~~~~~~d~~i~v~d~ 84 (167)
T 1c1y_A 67 ------MRDLYMKNGQGFALVYSI 84 (167)
T ss_dssp ------HHHHHHHHCSEEEEEEET
T ss_pred ------HHHHHhccCCEEEEEEEC
Confidence 112334556666554443
No 111
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=5.1e-08 Score=85.60 Aligned_cols=82 Identities=28% Similarity=0.288 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+|+|+|++|||||||++.|++........|..+.......+.+++.. ..+.++|+||......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 79 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFRT- 79 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhhh-
Confidence 589999999999999999999875433333333333333445554432 3589999999643211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 80 ------~~~~~~~~~d~ii~v~d~ 97 (195)
T 1x3s_A 80 ------LTPSYYRGAQGVILVYDV 97 (195)
T ss_dssp ------SHHHHHTTCCEEEEEEET
T ss_pred ------hhHHHhccCCEEEEEEEC
Confidence 122344566666665544
No 112
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.67 E-value=1e-09 Score=99.07 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..+.+|++++|+||||||||||+++|+|...
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999999853
No 113
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.67 E-value=2.7e-08 Score=95.37 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=70.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h----hhccC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C----QLFKP 82 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~----~~~~~ 82 (394)
+....+.+|++++|+||||||||||++.|+|. ..|+.|.|.+.|.++... . ..|.+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH-----------HHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 44456788999999999999999999999998 567888888877654211 1 11233
Q ss_pred CCcc--c----------------cceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCC--eEEecCCC
Q 016139 83 KSAV--P----------------AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPD--IIHVDDSV 141 (394)
Q Consensus 83 ~~~~--~----------------~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~--vl~ld~~~ 141 (394)
+... . ....++|++|+... .+.....+. ...+.+.+++ .+|+ ++++|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~-------~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD--- 228 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT-------NYSLMEELI--ACKKAVGKIVSGAPNEILLVLD--- 228 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSC-------CHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE---
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcc-------hhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe---
Confidence 3211 1 12345666665321 112222333 2334566676 6788 77765
Q ss_pred CCcchHHHHH
Q 016139 142 DPVRDLEVIS 151 (394)
Q Consensus 142 eP~~~ld~i~ 151 (394)
|++++|..+
T Consensus 229 -ptsglD~~~ 237 (302)
T 3b9q_A 229 -GNTGLNMLP 237 (302)
T ss_dssp -GGGGGGGHH
T ss_pred -CCCCcCHHH
Confidence 999998876
No 114
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.67 E-value=3.5e-09 Score=99.62 Aligned_cols=60 Identities=33% Similarity=0.517 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|+||||||||+|+|+|.....+++|++|.+...+.+.+.+. .+.++|+||....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~ 63 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK-----------------EFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc-----------------eEEEEeCCCcccc
Confidence 58999999999999999999998776689999999988888888763 3899999998753
No 115
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.66 E-value=3.8e-08 Score=87.59 Aligned_cols=61 Identities=30% Similarity=0.270 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+|+|+|++|||||||++.+++........|.+|.......+.+++.. ..+.++|++|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQG 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCc
Confidence 3689999999999999999998765544556666666666777776643 247889998864
No 116
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.65 E-value=8.8e-08 Score=83.69 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+|+|+|++|+|||||++.+++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998654
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.65 E-value=7.6e-09 Score=89.76 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=38.8
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
...++.|++++|+||||||||||+++|+|. . |++|.|.++|..+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~-----------l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQG-----------I-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHH-----------T-TCCSCCCCCTTTC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHh-----------C-CCCCeEEECCEee
Confidence 345689999999999999999999999998 6 8889999888654
No 118
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.65 E-value=1.5e-07 Score=81.23 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||+|.+++... ..+++.++.......+.+++.. ..+.++|++|.....
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~-- 71 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQEEFG-- 71 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTTTS--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 5899999999999999999998732 2445544444334445555432 348899999964321
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.+ ....++.+|+++.|+++
T Consensus 72 --~~---~~~~~~~~d~~i~v~d~ 90 (181)
T 2fn4_A 72 --AM---REQYMRAGHGFLLVFAI 90 (181)
T ss_dssp --CC---HHHHHHHCSEEEEEEET
T ss_pred --HH---HHHHHhhCCEEEEEEeC
Confidence 11 12344566666655443
No 119
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.64 E-value=4.4e-09 Score=106.96 Aligned_cols=92 Identities=27% Similarity=0.248 Sum_probs=46.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+.+.+|+|+|++|||||||+|.|++.... ++++|++|.++....+.++|. .+.++||||+.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~-----------------~l~liDT~G~~ 292 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT-----------------MFRLTDTAGLR 292 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE-----------------EEEEEC-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe-----------------EEEEEECCCCC
Confidence 345788999999999999999999998653 589999999999999988873 48999999996
Q ss_pred ccccCCCCCc-hhhhhHHHhhhhHHhhhhcc
Q 016139 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 100 ~~~~~~~~l~-~~~l~~l~~~d~il~vv~a~ 129 (394)
........++ ......++.+|++++|+|+.
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 323 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLG 323 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 5332222111 12234456788888877765
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.64 E-value=1.2e-08 Score=86.67 Aligned_cols=60 Identities=38% Similarity=0.464 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++++|++|+|||||++.+++.... ..++|.+|..+....+.+.+. .+.++|+||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG-----------------RFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE-----------------EEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc-----------------eEEEEECCCCCCc
Confidence 37899999999999999999988654 477888888887777777653 4789999998653
No 121
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.63 E-value=5.4e-09 Score=110.77 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=48.7
Q ss_pred Hhhhhcc-CCC---CeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh---
Q 016139 123 FHVLRAF-EDP---DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (394)
Q Consensus 123 l~vv~a~-~~~---~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L--- 195 (394)
+.+++|+ .+| +++++| ||+++||+.+...+...+..+. .....+.. .+|++..+ ..||++ .+|
T Consensus 552 v~iAraL~~~p~~p~llllD---EPt~~LD~~~~~~i~~~l~~l~----~~g~tvi~-vtHd~~~~-~~~d~i-~~l~~~ 621 (670)
T 3ux8_A 552 VKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLLDVLHRLV----DNGDTVLV-IEHNLDVI-KTADYI-IDLGPE 621 (670)
T ss_dssp HHHHHHHHSCCCSCEEEEEE---STTTTCCHHHHHHHHHHHHHHH----HTTCEEEE-ECCCHHHH-TTCSEE-EEEESS
T ss_pred HHHHHHHhhCCCCCcEEEEe---CCCCCCCHHHHHHHHHHHHHHH----HCCCEEEE-EeCCHHHH-HhCCEE-EEecCC
Confidence 4556666 444 599999 9999999998655544332221 11112212 24999876 469999 778
Q ss_pred ---cCCCceecCCC
Q 016139 196 ---QDGKDVRLGDW 206 (394)
Q Consensus 196 ---~~g~~~~~~~~ 206 (394)
.+|+++..|+.
T Consensus 622 ~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 622 GGDRGGQIVAVGTP 635 (670)
T ss_dssp SGGGCCEEEEEECH
T ss_pred cCCCCCEEEEecCH
Confidence 78999888753
No 122
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.63 E-value=4.3e-08 Score=96.02 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh---------h----hhccC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C----QLFKP 82 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l---------~----~~~~~ 82 (394)
+....+.+|++++|+||||||||||++.|+|. ..|+.|.|.+.|.++... . ..|.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~ 217 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 217 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh-----------ccccCCEEEEecccccccchhHHHHHHHHhcCeEEEE
Confidence 44556788999999999999999999999998 567888888877654211 1 11233
Q ss_pred CCcc------------------ccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc-CCCC--eEEecCCC
Q 016139 83 KSAV------------------PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPD--IIHVDDSV 141 (394)
Q Consensus 83 ~~~~------------------~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~-~~~~--vl~ld~~~ 141 (394)
+... .....++|++|+... .+.....+. ...+.+.+++ .+|+ ++++|
T Consensus 218 q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~-------~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD--- 285 (359)
T 2og2_A 218 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT-------NYSLMEELI--ACKKAVGKIVSGAPNEILLVLD--- 285 (359)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC-------CHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE---
T ss_pred ecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChh-------hhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc---
Confidence 3211 112456777766421 122222333 2334556666 6788 77775
Q ss_pred CCcchHHHHHH
Q 016139 142 DPVRDLEVISA 152 (394)
Q Consensus 142 eP~~~ld~i~~ 152 (394)
|++++|..+.
T Consensus 286 -pttglD~~~~ 295 (359)
T 2og2_A 286 -GNTGLNMLPQ 295 (359)
T ss_dssp -GGGGGGGHHH
T ss_pred -CCCCCCHHHH
Confidence 9999998763
No 123
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.62 E-value=1.6e-07 Score=82.66 Aligned_cols=76 Identities=25% Similarity=0.262 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++|+|++|||||||++.+++........| |.......+.+++.. ..+.++|++|....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~-- 80 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQS---------------YLLLIRDEGGPPEL-- 80 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEE---------------EEEEEEECSSSCCH--
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEE---------------EEEEEEECCCChhh--
Confidence 46999999999999999999887643221111 111112245555532 24788999986321
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
..++.+|+++.|+|+
T Consensus 81 ----------~~~~~~~~~i~v~d~ 95 (184)
T 3ihw_A 81 ----------QFAAWVDAVVFVFSL 95 (184)
T ss_dssp ----------HHHHHCSEEEEEEET
T ss_pred ----------heecCCCEEEEEEEC
Confidence 144566666665443
No 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.62 E-value=2.4e-07 Score=81.90 Aligned_cols=81 Identities=25% Similarity=0.241 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++|+|++|+|||||++.+++.... ..++.++.......+.+++. ...+.++|++|...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED--- 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc---
Confidence 468999999999999999999986432 22222221112223344432 13488999999754
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.......++.+|+++.|+|+
T Consensus 89 -----~~~~~~~~~~~d~iilv~D~ 108 (196)
T 2atv_A 89 -----TIQREGHMRWGEGFVLVYDI 108 (196)
T ss_dssp -----CHHHHHHHHHCSEEEEEEET
T ss_pred -----ccchhhhhccCCEEEEEEEC
Confidence 11223445667776665544
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.62 E-value=4.4e-09 Score=105.80 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.+|+|+|+||+|||||||.|+|....+ +++|++|++...+.+.+.+. .+.++||+|+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS-----------------CCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 479999999999999999999987654 88999999998888877763 489999999863321
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
. ...+..+....++.+|++++|+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~ 93 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGR 93 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 0112223345677888888887764
No 126
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.62 E-value=1.3e-07 Score=81.87 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||++.+++..... +..|+.......+.+++.. ..+.++|++|...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~---- 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQT---------------HLVLIREEAGAPD---- 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEE---------------EEEEEEECSSSCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEE---------------EEEEEEECCCCch----
Confidence 589999999999999999999865422 2212211122334444422 2478999998643
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
...++.+|+++.|+|+
T Consensus 67 --------~~~~~~~d~~ilv~D~ 82 (178)
T 2iwr_A 67 --------AKFSGWADAVIFVFSL 82 (178)
T ss_dssp --------HHHHHHCSEEEEEEET
T ss_pred --------hHHHHhCCEEEEEEEC
Confidence 1345667777666554
No 127
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.61 E-value=1.2e-07 Score=80.98 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++++|++|||||||+|.+++..... .+.+++|.. ..+.+++.. ..+.++|++|...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEE---------------ASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEE---------------EEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEE---------------EEEEEEECCCCcc
Confidence 589999999999999999999875422 344444432 233444422 3478999998654
No 128
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.61 E-value=2.1e-08 Score=90.15 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+........-.+|+|+|++|||||||++.|++...
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 333333344457899999999999999999998643
No 129
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=3.5e-09 Score=94.65 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
|++++|+||||||||||+++|+|. .. ++| +.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~-----------~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV-----------LK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH-----------HH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhh-----------cc-cCC-EEEcCEec
Confidence 578999999999999999999998 44 667 66665443
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.57 E-value=5.1e-08 Score=95.41 Aligned_cols=63 Identities=32% Similarity=0.356 Sum_probs=52.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++++|+||||||||+|.|++......++|++|..+..+.+...+ ..+.++|+||+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCcccc
Confidence 3457999999999999999999999876667899999988877776554 24899999998653
No 131
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.57 E-value=3e-08 Score=88.21 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=45.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++|+|+||||||||++.|+|........|..+..+..|.+.++|.. ..+.++|++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCch
Confidence 589999999999999999999986554444555566778899888753 247789999864
No 132
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=3.7e-08 Score=86.20 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++|+|++|||||||++.|++.....+++|++|..+..+.+.+.+. .+.++|+||....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCc-----------------EEEEEECCCcCcc
Confidence 58999999999999999999997655678888888888888887652 4899999997643
No 133
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.56 E-value=2e-07 Score=81.06 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|++|+|||||+|.+++... ...++.++.......+.+++.. ..+.++|++|......
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 81 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQEEFSA 81 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCGGGCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcE---------------EEEEEEECCCchhhHH
Confidence 36899999999999999999997633 2333333322223444444432 2367899999643211
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+ ....++.+|+++.|+++
T Consensus 82 ----~---~~~~~~~~d~~i~v~d~ 99 (183)
T 3kkq_A 82 ----M---REQYMRTGDGFLIVYSV 99 (183)
T ss_dssp ----S---HHHHHHHCSEEEEEEET
T ss_pred ----H---HHHHHhcCCEEEEEEEC
Confidence 1 12345667777665544
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.56 E-value=1.5e-07 Score=88.22 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=37.5
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-eeEEecCCcch
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERF 73 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-~G~i~v~g~~~ 73 (394)
+.+|+.++|+||||||||||+++|+|. ..|+ +|.|.+.|.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~-----------~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH-----------HHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh-----------CCCCCCCEEEEcCCcc
Confidence 788999999999999999999999998 6677 89998877654
No 135
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.56 E-value=5.3e-07 Score=76.28 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++++|++|||||||++.+++.... ..++.++.......+.+++.. ..+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCCch
Confidence 47999999999999999999986432 233333322223334444321 347899999954
No 136
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=4.6e-08 Score=86.22 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=39.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
...-.+|+|+|++|+|||||++.+++........|..+.......+.+.+. ...+.++|++|.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK---------------RVKLQIWDTAGQ 82 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT---------------TEEEEEECHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCh
Confidence 344579999999999999999999986432221122122222233333332 134899999985
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.55 E-value=5.7e-08 Score=90.33 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCc-cccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPF-CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~-~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|+|+|++|||||||+|.|++..... +..|. +|.....+.+.+.+. .+.++||||+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR-----------------EIVIIDTPDMFSW 84 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE-----------------EEEEEECCGGGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC-----------------EEEEEECcCCCCC
Confidence 4689999999999999999999987544 33444 677777777777653 4899999999764
Q ss_pred c
Q 016139 102 A 102 (394)
Q Consensus 102 ~ 102 (394)
.
T Consensus 85 ~ 85 (260)
T 2xtp_A 85 K 85 (260)
T ss_dssp S
T ss_pred C
Confidence 3
No 138
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.55 E-value=2e-07 Score=82.24 Aligned_cols=60 Identities=30% Similarity=0.360 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+++++|++|+|||||++.+++.... ..++.++.......+.+++.. ..+.++|++|..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 82 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcH
Confidence 468999999999999999999987532 222222222222234444422 247899999954
No 139
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.54 E-value=2.8e-07 Score=79.24 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=36.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++|+|++|+|||||++.+++..... .+.+++ ......+.+++.. ..+.++|++|...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGED---------------TTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEE---------------EEEEEECCC----
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEE---------------EEEEEEecCCCCc
Confidence 589999999999999999999875432 222222 2234455565532 2478999998743
No 140
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.53 E-value=4.4e-08 Score=84.70 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
....+|+++|++|||||||++.+++........|.+|.......+.+++. .+.++|+||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK-----------------KITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE-----------------EEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc-----------------eEEEEECCCCHH
Confidence 34579999999999999999999998766667777777777777777653 378999999754
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.52 E-value=1.1e-08 Score=103.61 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.+|+|+|.+|||||||+|.|+|.... +.+.|++|.+...+.+.+.+. .+.++||+|+.....
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 86 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS-----------------CCEEECCCC------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 48999999999999999999998664 478999999988888777653 489999999863221
Q ss_pred C-CCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 104 ~-~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
. ...+.......++.+|++++|+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~ 113 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGR 113 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCC
Confidence 1 0111222345567888888888763
No 142
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.52 E-value=3e-07 Score=80.59 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+|+++|.+|||||||++.|++... ...++.++.......+.+.+.. ..+.++|++|..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 80 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQE 80 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEE---------------EEEEEEECCChH
Confidence 5899999999999999999998643 2334444433333444454422 248899999964
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.52 E-value=8.5e-09 Score=104.50 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=58.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+.+.+++|+|++|||||||+|.|++.... ++++|++|.+.....+.++|. .+.++||||+.
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~v~liDT~G~~ 283 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI-----------------PVQVLDTAGIR 283 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE-----------------EEEECC-----
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE-----------------EEEEEECCccc
Confidence 346788999999999999999999987654 588999999988888888763 37999999986
Q ss_pred ccccCCCCCc-hhhhhHHHhhhhHHhhhhcc
Q 016139 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 100 ~~~~~~~~l~-~~~l~~l~~~d~il~vv~a~ 129 (394)
......+..+ .+....++.+|++++|+|+.
T Consensus 284 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 314 (462)
T 3geh_A 284 ETSDQVEKIGVERSRQAANTADLVLLTIDAA 314 (462)
T ss_dssp ---------------CCCCSCSEEEEEEETT
T ss_pred cchhHHHHHHHHHHhhhhhcCCEEEEEeccC
Confidence 5322211111 12233455677777766653
No 144
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.50 E-value=8.8e-08 Score=89.52 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..+++++|.+|+|||||+|+|++... ..++++++|..+....+.+.+. .+.++||||+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF-----------------TINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE-----------------EEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe-----------------eEEEEECCCCCCcc
Confidence 46899999999999999999999876 4578899999988888877763 48999999997643
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.50 E-value=7.4e-08 Score=88.36 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
|.+++|++++|+||||||||||+++|++
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999993
No 146
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.49 E-value=2.1e-08 Score=98.76 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~------~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~ 96 (394)
.+..++++|.+|+|||||+|+|++. ....+++|+||..+..+. +. ..+.++|||
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDtP 220 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE------------------SGATLYDTP 220 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS------------------TTCEEEECC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC------------------CCeEEEeCC
Confidence 3568999999999999999999987 344589999998765433 22 237999999
Q ss_pred cccccc
Q 016139 97 GLVRGA 102 (394)
Q Consensus 97 gl~~~~ 102 (394)
|+....
T Consensus 221 G~~~~~ 226 (369)
T 3ec1_A 221 GIINHH 226 (369)
T ss_dssp SCCCCS
T ss_pred CcCcHH
Confidence 997654
No 147
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.49 E-value=1.4e-07 Score=90.25 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhh----hhhccCCC-ccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l----~~~~~~~~-~~~~~i~~~D~~gl~ 99 (394)
..++|+|+||||||||+|+|+|.. ..|.+| +.+.|.++... ...+.++. .....++++|++|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~----------~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD----------LYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----------ccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 578999999999999999999863 234555 44443332110 01223332 334568999999986
Q ss_pred c
Q 016139 100 R 100 (394)
Q Consensus 100 ~ 100 (394)
.
T Consensus 88 ~ 88 (301)
T 2qnr_A 88 D 88 (301)
T ss_dssp -
T ss_pred h
Confidence 4
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.49 E-value=1.4e-07 Score=83.50 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++|+|+||||||||++.++|........|..+.++..|.+.++|..+ .+.++|++|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~---------------~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI---------------KAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE---------------EEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE---------------EEEEEECCCCcc
Confidence 5899999999999999999999876555556556667789999887532 356799998643
No 149
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.48 E-value=9e-08 Score=90.79 Aligned_cols=60 Identities=35% Similarity=0.480 Sum_probs=38.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+..++++|.||+|||||+|+|+|... .+++.|++|..+. .+.++ ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC------------------CCEEEEECcCcCC
Confidence 3456899999999999999999999874 5589999998775 23332 2489999999975
Q ss_pred c
Q 016139 101 G 101 (394)
Q Consensus 101 ~ 101 (394)
.
T Consensus 178 ~ 178 (282)
T 1puj_A 178 P 178 (282)
T ss_dssp S
T ss_pred C
Confidence 4
No 150
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.47 E-value=6e-08 Score=97.53 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..+++|+|.+|+|||||+|.|+|.... .+++|++|.+.....+.++|. .+.++||||+.+..
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKKG 237 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE-----------------EEEETTHHHHTCBT
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe-----------------EEEEEECCCcCcCc
Confidence 368999999999999999999998764 588999999988888888763 37999999987543
Q ss_pred cCCCCCch----hhhhHHHhhhhHHhhhhcc
Q 016139 103 HEGQGLGN----SFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 103 ~~~~~l~~----~~l~~l~~~d~il~vv~a~ 129 (394)
.....+.. ..+..++.+|+++.|+|+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 32211111 1123456667666666553
No 151
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.45 E-value=7.5e-08 Score=87.65 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
...+|+|+|++|||||||+|.|++......++|++|.....+.+.+.+ ..+.++|+||....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCc
Confidence 356999999999999999999998866557788888887777666554 24899999998653
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.43 E-value=1.4e-06 Score=76.50 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+|+|+|++|||||||++.+++... ...++.|+.......+.+++.. ..+.++|++|...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQP---------------VHLRVMDTADLDT 81 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEE---------------EEEEEEECCCCCc
Confidence 46899999999999999999998642 2333333221112233333321 3478999999643
No 153
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.43 E-value=1.1e-07 Score=81.21 Aligned_cols=82 Identities=26% Similarity=0.248 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|+|||||++.+++........|..+.......+.+++.. ..+.++|+||......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~- 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFRT- 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTSC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 579999999999999999999876544444444444444555555432 2488999999643221
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 68 ------~~~~~~~~~d~~i~v~d~ 85 (170)
T 1g16_A 68 ------ITTAYYRGAMGIILVYDI 85 (170)
T ss_dssp ------CCHHHHTTEEEEEEEEET
T ss_pred ------hHHHHhccCCEEEEEEEC
Confidence 112445667777665554
No 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.42 E-value=2.7e-07 Score=81.46 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
++++|+||||||||||+++|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999983
No 155
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.42 E-value=1.3e-07 Score=83.19 Aligned_cols=85 Identities=27% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++|+|++|||||||++.+++........|..+.......+.+++.. ..+.++|++|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQESF 83 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGGGT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 334689999999999999999999876544444444444444556665532 24899999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. + ....++.+|+++.|+|+
T Consensus 84 ~~----~---~~~~~~~~d~ii~v~d~ 103 (191)
T 2a5j_A 84 RS----I---TRSYYRGAAGALLVYDI 103 (191)
T ss_dssp SC----C---CHHHHTTCSEEEEEEET
T ss_pred hh----h---HHHHhccCCEEEEEEEC
Confidence 21 1 12345566766665544
No 156
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.40 E-value=1.1e-07 Score=92.35 Aligned_cols=45 Identities=29% Similarity=0.537 Sum_probs=35.4
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
....+..|++++|+|+||||||||+|+|+|. ..|+.|.+.+.+.+
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-----------~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSL-----------LTAAGHKVAVLAVD 92 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEEEEC
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHh-----------hhhCCCEEEEEEEc
Confidence 3455788999999999999999999999987 44566666555443
No 157
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.40 E-value=1.8e-07 Score=80.60 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++|+|++|+|||||+|.+++........|..+.+.....+.+++.. ..+.++|+||......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~- 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS- 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHHHH-
Confidence 589999999999999999999875544445555555555556665532 2489999999543211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+++
T Consensus 79 ------~~~~~~~~~d~~i~v~d~ 96 (179)
T 2y8e_A 79 ------LIPSYIRDSTVAVVVYDI 96 (179)
T ss_dssp ------GSHHHHHTCSEEEEEEET
T ss_pred ------HHHHHhcCCCEEEEEEEC
Confidence 112345566666665444
No 158
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.39 E-value=1.8e-07 Score=82.98 Aligned_cols=63 Identities=32% Similarity=0.421 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccc-cCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCT-IEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T-~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+|+|+|++|+|||||++.|++..... ..++.|+ .+.....+.+++.. ....+.++|++|..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcH
Confidence 4699999999999999999999873322 2333332 23445556665420 01348999999874
No 159
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.39 E-value=2.1e-07 Score=82.99 Aligned_cols=85 Identities=25% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|+||....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQERF 82 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 345799999999999999999999876544555555555555566666532 24899999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|+++.|+++
T Consensus 83 ~~-------~~~~~~~~~d~ii~v~d~ 102 (213)
T 3cph_A 83 RT-------ITTAYYRGAMGIILVYDV 102 (213)
T ss_dssp TC-------CCHHHHTTCSEEEEEEET
T ss_pred HH-------HHHHHhccCCEEEEEEEC
Confidence 21 112345566766665544
No 160
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.38 E-value=2.6e-08 Score=107.39 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=47.9
Q ss_pred Hhhhhcc-CC---CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh---
Q 016139 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (394)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L--- 195 (394)
+.+++++ .+ |+++++| ||++++|+.+.+.+...+..+. .....+.. .+|++..+ ..||++ ..|
T Consensus 739 v~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~~lL~~L~----~~G~tVIv-isHdl~~i-~~aDri-i~L~p~ 808 (842)
T 2vf7_A 739 IKLATELRRSGRGGTVYVLD---EPTTGLHPADVERLQRQLVKLV----DAGNTVIA-VEHKMQVV-AASDWV-LDIGPG 808 (842)
T ss_dssp HHHHHTTSSCCSSCEEEEEE---CTTTTCCHHHHHHHHHHHHHHH----HTTCEEEE-ECCCHHHH-TTCSEE-EEECSS
T ss_pred HHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHH----hCCCEEEE-EcCCHHHH-HhCCEE-EEECCC
Confidence 4566666 43 7999999 9999999988655444332221 11112211 23999988 689999 777
Q ss_pred ---cCCCceecCC
Q 016139 196 ---QDGKDVRLGD 205 (394)
Q Consensus 196 ---~~g~~~~~~~ 205 (394)
.+|+++..++
T Consensus 809 ~g~~~G~Iv~~g~ 821 (842)
T 2vf7_A 809 AGEDGGRLVAQGT 821 (842)
T ss_dssp SGGGCCSEEEEEC
T ss_pred CCCCCCEEEEEcC
Confidence 5788877654
No 161
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.38 E-value=2.7e-07 Score=86.54 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+++++|.+|+|||||+|.|++... ..++++.+|..+....+...+ ..+.++||||+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEG 100 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCC
Confidence 46899999999999999999999875 347788888877766665544 24899999998754
No 162
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.37 E-value=2.6e-07 Score=82.02 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++|+|++|||||||++.|++........|..+.+.....+.+++.. ..+.++|+||......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERFQS 72 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGGSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 3689999999999999999999876544434443444444555555432 3489999999643221
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+. ...++.+|+++.|+|+
T Consensus 73 ----~~---~~~~~~~d~~i~v~d~ 90 (207)
T 1vg8_A 73 ----LG---VAFYRGADCCVLVFDV 90 (207)
T ss_dssp ----SC---CGGGTTCSEEEEEEET
T ss_pred ----hH---HHHHhCCcEEEEEEEC
Confidence 11 1234556666665544
No 163
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=2.6e-07 Score=78.83 Aligned_cols=82 Identities=23% Similarity=0.228 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|||||||++.+++........|..+.......+.+++.. ..+.++|+||.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT---------------VKFEIWDTAGQERFA-- 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCChhhh--
Confidence 479999999999999999999875433333333333334445554432 358999999954221
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+++
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~ 85 (170)
T 1ek0_A 67 -----SLAPXYYRNAQAALVVYDV 85 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEET
T ss_pred -----hhhhhhhccCcEEEEEEec
Confidence 1122334556666555443
No 164
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.37 E-value=1.4e-07 Score=90.45 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+.+++|+|++|||||||+|.+++..... +++|++|+....+.+.+.+ ...+.++|+||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG----------------NMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT----------------TEEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC----------------ceEEEEEECCCcHHHh
Confidence 4689999999999999999998875433 6789999999988887754 1358999999975321
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... ........++.+|+++.|+|+
T Consensus 67 ~~~--~~~~~~~~~~~ad~vi~V~D~ 90 (307)
T 3r7w_A 67 ENY--FTKQKDHIFQMVQVLIHVFDV 90 (307)
T ss_dssp HHH--HTTTHHHHHTTCSEEEEEEET
T ss_pred hhh--hhhHHHHHhccCCEEEEEEEC
Confidence 000 000112334566666666655
No 165
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.37 E-value=2.5e-07 Score=82.33 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+|+|+|++|||||||++.|++........|..+.......+.+++.. ..+.++|+||......
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 72 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERFRT- 72 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTTTC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHHHH-
Confidence 589999999999999999999876544445555555555566666532 2489999999643221
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+ ....++.+|++++|+|+
T Consensus 73 ---~---~~~~~~~~d~vilv~d~ 90 (206)
T 2bcg_Y 73 ---I---TSSYYRGSHGIIIVYDV 90 (206)
T ss_dssp ---C---CGGGGTTCSEEEEEEET
T ss_pred ---H---HHHhccCCCEEEEEEEC
Confidence 1 11334556666665544
No 166
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.36 E-value=1.5e-07 Score=102.56 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=73.3
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCCCCccccCCcee-EEecCCcchhhhhhhccCCCccccc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTL--------TKLAIPAENFPFCTIEPNEA-RVNIPDERFEWLCQLFKPKSAVPAF 89 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~L--------tg~~~~~~~~p~~T~~p~~G-~i~v~g~~~~~l~~~~~~~~~~~~~ 89 (394)
..+..|.+++|+|||||||||+++++ .|.. -|..+ .+.+.+
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-----------vpa~~~~~~~~d------------------- 706 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-----------VPCESAEVSIVD------------------- 706 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-----------BSEEEEEEECCS-------------------
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-----------cccccccchHHH-------------------
Confidence 34567899999999999999999999 5542 13222 121111
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccCCCCeEEecCCCCCcchHHHHHHHHHHhH-HHHHHHHHHH
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD-IEFMERRIED 168 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~~~~vl~ld~~~eP~~~ld~i~~el~~~d-i~~l~k~l~~ 168 (394)
.+....|.......+.+ .|...+. .+..++++..+|+++++| ||++++|+.+...+.+. ++.+.+ .
T Consensus 707 -~i~~~ig~~d~l~~~lS---tf~~e~~---~~a~il~~a~~~sLlLLD---Ep~~GlD~~~~~~i~~~il~~l~~---~ 773 (934)
T 3thx_A 707 -CILARVGAGDSQLKGVS---TFMAEML---ETASILRSATKDSLIIID---ELGRGTSTYDGFGLAWAISEYIAT---K 773 (934)
T ss_dssp -EEEEECC---------C---HHHHHHH---HHHHHHHHCCTTCEEEEE---SCSCSSCHHHHHHHHHHHHHHHHH---T
T ss_pred -HHHHhcCchhhHHHhHh---hhHHHHH---HHHHHHHhccCCcEEEEe---CCCCCCCHHHHHHHHHHHHHHHHh---c
Confidence 12222222221111111 1111111 122344445789999999 99999999876433222 221111 1
Q ss_pred HHHhhhcccchhhHHHHHHHHHHHHHhcCCCceec
Q 016139 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (394)
Q Consensus 169 ~~~~~~~~~~h~~~~~~~l~~ri~~~L~~g~~~~~ 203 (394)
....+.. .+|+.+ +..+|+++ ..+.+|++...
T Consensus 774 ~g~~vl~-aTH~~e-l~~lad~~-~~v~ng~v~~~ 805 (934)
T 3thx_A 774 IGAFCMF-ATHFHE-LTALANQI-PTVNNLHVTAL 805 (934)
T ss_dssp TCCEEEE-EESCGG-GGGGGGTC-TTEEEEEEEEE
T ss_pred CCCEEEE-EcCcHH-HHHHhccc-ceeEeeEEEEE
Confidence 1111212 248854 44688887 67777776544
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.36 E-value=2.8e-07 Score=90.21 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+..++|+||||||||||+++|+|.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456779999999999999999999998
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.36 E-value=2.6e-07 Score=93.35 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
...+++++|.+|+|||||+|.|++... ..+++|++|.++....+.+++. .+.++||||+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE-----------------EEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc-----------------eEEEEECCCCCcC
Confidence 457899999999999999999998764 3489999999999999888763 4899999998754
Q ss_pred ccCCCCCc----hhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLG----NSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~----~~~l~~l~~~d~il~vv~a 128 (394)
........ ...+..++.+|+++.|+|+
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~ 287 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDG 287 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEET
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 43221111 1223455667777776665
No 169
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.34 E-value=8.3e-07 Score=85.02 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
.|++++|+||||||||||++.|+|. ..|+.|.|.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl-----------l~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY-----------YQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH-----------HHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-----------HHhcCCEEEEEeecC
Confidence 5899999999999999999999999 668889988877654
No 170
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.34 E-value=1.3e-07 Score=94.08 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=25.5
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
...+..| +++|+|+||||||||+++|.+..
T Consensus 55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 55 ELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788 99999999999999999997663
No 171
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.34 E-value=8.1e-07 Score=77.74 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+|+|+|++|||||||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5899999999999999999998743
No 172
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.32 E-value=1.9e-07 Score=81.94 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+|+|+|++|||||||++.+++........|..+.+.....+.+++.. ..+.++|++|..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 80 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQE 80 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCch
Confidence 3689999999999999999999875544334443333444455555432 248999999954
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.31 E-value=2.4e-07 Score=82.64 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+..|.+++|+|+||||||||+|+|+|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999999999985
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.31 E-value=3.4e-07 Score=87.38 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
-.|+|+|.+|||||||+|+|+|...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 5899999999999999999999865
No 175
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.30 E-value=9.2e-08 Score=95.77 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~-~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..++|+|..|+|||||+|.|++.... .+++|++|.++....+.+.+. ..+.++||||......
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDVGE 98 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcccc
Confidence 58999999999999999999998763 478999999999988887752 2589999999986543
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.+.....+....++.+|+++.|+|+
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 3332333445566677877777765
No 176
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.30 E-value=2.7e-07 Score=80.33 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=43.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++|+|++|||||||++.+++........|..+.......+.+++.. ..+.++|+||..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 70 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcH
Confidence 689999999999999999999876544444544444445555555432 248999999853
No 177
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.30 E-value=4.2e-07 Score=79.90 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|++|+|||||+|.|++........|..+.......+.+.+. ...+.++|++|.....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~- 88 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA---------------AVKAQIWDTAGLERYR- 88 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTE---------------EEEEEEEEESCCCTTC-
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEeCCCchhhh-
Confidence 468999999999999999999987543322221111112222333322 1358899999974321
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+|+
T Consensus 89 ------~~~~~~~~~~d~vi~v~D~ 107 (193)
T 2oil_A 89 ------AITSAYYRGAVGALLVFDL 107 (193)
T ss_dssp ------TTHHHHHTTCCEEEEEEET
T ss_pred ------hhhHHHhccCCEEEEEEEC
Confidence 1112334556665554443
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.29 E-value=5.2e-07 Score=79.44 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
.+.+|++++|+||||||||||+++|++. +..|.+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------------PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------------SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------------cCCCeEEEcccch
Confidence 3778999999999999999999999987 6678888877543
No 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.28 E-value=1e-06 Score=90.69 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
...+|+|+|.+|||||||+|.+++..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999999875
No 180
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.28 E-value=5.5e-07 Score=77.88 Aligned_cols=82 Identities=20% Similarity=0.099 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+++++|++|+|||||++.+++........|..+.......+.+++.. ..+.++|+||......
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 76 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT---------------VKFEIWDTAGQERYHS- 76 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEE---------------EEEEEEECCCSGGGGG-
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 589999999999999999999875433322322222223344444321 3589999999543211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+|+
T Consensus 77 ------~~~~~~~~~d~~i~v~d~ 94 (181)
T 2efe_B 77 ------LAPMYYRGAAAAIIVFDV 94 (181)
T ss_dssp ------GTHHHHTTCSEEEEEEET
T ss_pred ------hhHHHhccCCEEEEEEEC
Confidence 112334556666555443
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.27 E-value=1.5e-06 Score=86.73 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc--CCceeEEecCCcchhhhhhhccCCC-ccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~--~p~~G~i~v~g~~~~~l~~~~~~~~-~~~~~i~~~D~~gl~~~ 101 (394)
..++|+|+||||||||+|+|+|.......++..+. .++.+. . ...+.++. .....++++|++|+...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~-~---------~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQV-E---------QSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEE-E---------EEECC------CEEEEEEECC-----
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceee-e---------eEEEEEecCCcccceeeeechhhhhh
Confidence 46899999999999999999998542221111111 011110 0 01122222 23346899999998754
Q ss_pred ccCCCCCchhhhhHHH-hhhhH----Hhhhhcc-CCCC---eEEecCCCCCc-chHHHHH
Q 016139 102 AHEGQGLGNSFLSHIR-AVDGI----FHVLRAF-EDPD---IIHVDDSVDPV-RDLEVIS 151 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~-~~d~i----l~vv~a~-~~~~---vl~ld~~~eP~-~~ld~i~ 151 (394)
......+ ..+...+. ..+.. +.+.+++ .+|+ ++++| +|+ ..++..+
T Consensus 102 ~~~~~~~-~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ld---ePt~~~L~~~d 157 (418)
T 2qag_C 102 VDNSNCW-QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI---APSGHGLKPLD 157 (418)
T ss_dssp ------C-HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEEC---CC-CCSCCHHH
T ss_pred ccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEe---cCcccCCCHHH
Confidence 3211101 11111110 01111 1245555 6788 78888 887 5777766
No 182
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.26 E-value=1.5e-07 Score=82.70 Aligned_cols=57 Identities=28% Similarity=0.225 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI--PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~--~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+++|+|++|||||||+|.|++... ...+.|++|....... ++ ..+.++|+||+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET------------------TTEEEEECCCBCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC------------------CcEEEEECCCCCc
Confidence 46899999999999999999998752 2356666665543322 22 2489999999754
No 183
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.26 E-value=8.5e-07 Score=91.21 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=83.2
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCCCccccCCceeEEecCCcchhh----hh--hhccCCCcc-ccc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNT--LTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKSAV-PAF 89 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~--Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~----l~--~~~~~~~~~-~~~ 89 (394)
|.++.|++++|+|+||||||||+++ ++|. ..|..|.+++.+.+... .. ..+.+|... ...
T Consensus 34 G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-----------~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 34 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------IEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-----------HhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 3888999999999999999999999 6788 56788999998875321 11 134444311 111
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc--CCCCeEEecCCCCCcc-----hHHHHHHHHHHhHHHHH
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF--EDPDIIHVDDSVDPVR-----DLEVISAELRLKDIEFM 162 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~--~~~~vl~ld~~~eP~~-----~ld~i~~el~~~di~~l 162 (394)
+...+... . ... ...+..+...+.+-.....+ .+++++++| +|+. ++|+.....+...+..+
T Consensus 103 l~~~~~~~---~-~~~----~~~l~~~~l~~~~~~~~~~LS~g~~~~lilD---e~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 103 LFILDASP---D-PEG----QEVVGGFDLSALIERINYAIQKYRARRVSID---SVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp EEEEECCC---C-SSC----CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEE---CSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCc---c-cch----hhhhcccCHHHHHHHHHHHHHHcCCCEEEEC---CHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 32332211 0 000 11122222222222222222 578999999 6654 45665544443333222
Q ss_pred HHHHHHHHHhhhcccchhhHH---------HHHHHHHHHHHhcC
Q 016139 163 ERRIEDVEKSMKRSNDKQLKI---------EHELCQRVKAWLQD 197 (394)
Q Consensus 163 ~k~l~~~~~~~~~~~~h~~~~---------~~~l~~ri~~~L~~ 197 (394)
.+....+.. .+|++.+ ++.+||++ .+|.+
T Consensus 172 ----~~~g~tvl~-itH~~~~~~~~~~~~i~~~laD~v-i~L~~ 209 (525)
T 1tf7_A 172 ----KQIGATTVM-TTERIEEYGPIARYGVEEFVSDNV-VILRN 209 (525)
T ss_dssp ----HHHTCEEEE-EEECSSSSSCSSTTSCHHHHCSEE-EEEEE
T ss_pred ----HHCCCEEEE-EecCCCCccccccccceeeeeeEE-EEEEE
Confidence 111222212 2388876 46679998 77776
No 184
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.25 E-value=8.1e-07 Score=76.45 Aligned_cols=83 Identities=25% Similarity=0.226 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++++|++|+|||||++.|++........|..+.......+.+++.. ..+.++|++|....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~-- 77 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERF-- 77 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE---------------EEEEEEECTTGGGT--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeE---------------EEEEEEECCCChHh--
Confidence 3689999999999999999999875422222221222223334444321 34899999995421
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.......++.+|+++.|+|+
T Consensus 78 -----~~~~~~~~~~~d~~i~v~d~ 97 (179)
T 1z0f_A 78 -----RAVTRSYYRGAAGALMVYDI 97 (179)
T ss_dssp -----CHHHHHHHHTCSEEEEEEET
T ss_pred -----hhhHHHHhccCCEEEEEEeC
Confidence 11223445666666665544
No 185
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.25 E-value=6.2e-07 Score=79.13 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+..+++++|++|||||||++.+++.... .+ ..|..++.+.+.+++ ..+.++|++|.....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQAR 81 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT-----------------EEEEEEECCCSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC-----------------EEEEEEECCCCHHHH
Confidence 3468999999999999999999986532 22 245666777777765 248999999975432
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. +. ...++.+|+++.|+|+
T Consensus 82 ~----~~---~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 82 R----LW---KDYFPEVNGIVFLVDA 100 (190)
T ss_dssp T----SG---GGGCTTCCEEEEEEET
T ss_pred H----HH---HHHHhcCCEEEEEEEC
Confidence 1 11 1223456666665554
No 186
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.25 E-value=4.5e-07 Score=80.64 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++++|++|||||||++.+++.... .+ ..|+.++.+.+.+++ ..+.++|+||......
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAG-----------------MTFTTFDLGGHIQARR 84 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT-----------------EEEEEEEECC----CC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECC-----------------EEEEEEECCCcHhhHH
Confidence 458999999999999999999986432 22 235666777777765 2489999999653221
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
+ ....++.+|+++.|+|+
T Consensus 85 ----~---~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 85 ----V---WKNYLPAINGIVFLVDC 102 (198)
T ss_dssp ----G---GGGGGGGCSEEEEEEET
T ss_pred ----H---HHHHHhcCCEEEEEEEC
Confidence 1 11334567777666555
No 187
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.25 E-value=6.4e-07 Score=78.60 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+|+|+|++|||||||++.+++.......+ ..|+......+.+++ ..+.++|++|.....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRYR 81 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSS-----------------CEEEEEEECCSTTTG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECC-----------------EEEEEEECCCCHHHH
Confidence 45799999999999999999999875222222 234444555555553 358999999964322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|+++.|+|+
T Consensus 82 ~-------~~~~~~~~~d~ii~v~d~ 100 (190)
T 2h57_A 82 N-------LWEHYYKEGQAIIFVIDS 100 (190)
T ss_dssp G-------GGGGGGGGCSEEEEEEET
T ss_pred H-------HHHHHHhcCCEEEEEEEC
Confidence 1 112344666776665554
No 188
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.25 E-value=2.7e-07 Score=79.66 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++|+|++|||||||++.+++........|..+.+.....+.+++.. ...+.++|++|......
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~~ 71 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIGGK 71 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTTCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCccccc
Confidence 3689999999999999999999864321111222233344555555410 13589999999643211
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|+++.|+|+
T Consensus 72 -------~~~~~~~~~d~~i~v~d~ 89 (178)
T 2hxs_A 72 -------MLDKYIYGAQGVLLVYDI 89 (178)
T ss_dssp -------THHHHHTTCSEEEEEEET
T ss_pred -------hhhHHHhhCCEEEEEEEC
Confidence 112345566666665544
No 189
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.24 E-value=5.2e-07 Score=76.99 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..+++++|++|||||||+|.+++...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 36899999999999999999998753
No 190
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=5.2e-07 Score=80.72 Aligned_cols=59 Identities=29% Similarity=0.351 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.+++|+|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~ 85 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCc
Confidence 589999999999999999999875543333433333344455565532 24899999985
No 191
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.23 E-value=9e-07 Score=78.42 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+|+|+|++|||||||++.+++........|..+.......+.+++.. ..+.++|+||....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~- 90 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQERF- 90 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEE---------------EEEEEEECTTCTTC-
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCCcch-
Confidence 34799999999999999999999875322222222222233344444422 34899999995321
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.......++.+|+++.|+|+
T Consensus 91 ------~~~~~~~~~~~d~iilv~d~ 110 (199)
T 2p5s_A 91 ------RSIAKSYFRKADGVLLLYDV 110 (199)
T ss_dssp ------HHHHHHHHHHCSEEEEEEET
T ss_pred ------hhhHHHHHhhCCEEEEEEEC
Confidence 11223445667776665554
No 192
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=5.8e-07 Score=77.66 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
..+++++|++|+|||||++.+++..... ...|.++.......+.+++.. ..+.++|+||.....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~ 74 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERFR 74 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHHH
Confidence 3589999999999999999999876533 223333333333344555432 258899999964322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. ....++.+|+++.|+++
T Consensus 75 ~~-------~~~~~~~~d~ii~v~d~ 93 (180)
T 2g6b_A 75 SV-------THAYYRDAHALLLLYDV 93 (180)
T ss_dssp -----------CCGGGCSEEEEEEET
T ss_pred HH-------HHHHccCCCEEEEEEEC
Confidence 11 11234556666665544
No 193
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.22 E-value=2.6e-07 Score=84.40 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=29.8
Q ss_pred CCCCCCcccccCCCcEEEEEcCCCCcHHHHHHHHH-cCCCCC-CCCCccccCCceeEE
Q 016139 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT-KLAIPA-ENFPFCTIEPNEARV 66 (394)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Lt-g~~~~~-~~~p~~T~~p~~G~i 66 (394)
++-+.+....+.+|.++||+||||||||||+++|+ +..... ...+.+|..|..|.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence 34556777788999999999999999999999999 985322 233444555555543
No 194
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.21 E-value=6.3e-07 Score=79.30 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=48.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.....+|+|+|++|+|||||++.+++... ..+++.|+.......+.+++.. ..+.++|++|...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQDE 80 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEE---------------EEEEEEECCCSTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCHH
Confidence 34467999999999999999999998642 2445555443334445555432 2478999999754
Q ss_pred cccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... +.. ..++.+|+++.|+|+
T Consensus 81 ~~~----~~~---~~~~~~~~~i~v~d~ 101 (201)
T 2q3h_A 81 FDK----LRP---LCYTNTDIFLLCFSV 101 (201)
T ss_dssp CSS----SGG---GGGTTCSEEEEEEET
T ss_pred HHH----HhH---hhcCCCcEEEEEEEC
Confidence 321 111 234556666555443
No 195
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.21 E-value=9.9e-07 Score=75.11 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+++++|++|+|||||++.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999997643
No 196
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=2.5e-07 Score=88.71 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEec---CCcchhhhhhhccCCCccccceEEE
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEIH 93 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~~~~l~~~~~~~~~~~~~i~~~ 93 (394)
.+..+..|++++|+|+||||||||+|+|+|. ..|.+|.|.+ .|+........+ ... ...++
T Consensus 166 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~G~I~~~~~~G~~tt~~~~~~----~~~-~g~v~ 229 (307)
T 1t9h_A 166 DIIPHFQDKTTVFAGQSGVGKSSLLNAISPE-----------LGLRTNEISEHLGRGKHTTRHVELI----HTS-GGLVA 229 (307)
T ss_dssp TTGGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------------CCCCCEE----EET-TEEEE
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHhccc-----------ccccccceeeecCCCcccccHHHHh----hcC-CEEEe
Confidence 3456778999999999999999999999998 5688888877 554332111110 011 24678
Q ss_pred ecccccc
Q 016139 94 DIAGLVR 100 (394)
Q Consensus 94 D~~gl~~ 100 (394)
|+||+..
T Consensus 230 dtpg~~~ 236 (307)
T 1t9h_A 230 DTPGFSS 236 (307)
T ss_dssp SSCSCSS
T ss_pred cCCCccc
Confidence 8888754
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.21 E-value=3.4e-07 Score=83.23 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=24.6
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.....+++|++++|+||||||||||+++|+|.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567889999999999999999999999997
No 198
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.20 E-value=7.3e-07 Score=80.66 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|++|...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQER 74 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccc
Confidence 589999999999999999999876544444444444445556665532 2489999999643
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.20 E-value=6.4e-07 Score=88.07 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=42.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~-------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
.+..++++|.+|+|||||+|+|++.. ...+++|+||..+.... +. ..+.++||
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDt 218 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD------------------EESSLYDT 218 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS------------------SSCEEEEC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec------------------CCeEEEeC
Confidence 46789999999999999999999862 22478999998765533 32 23799999
Q ss_pred cccccc
Q 016139 96 AGLVRG 101 (394)
Q Consensus 96 ~gl~~~ 101 (394)
||+...
T Consensus 219 PG~~~~ 224 (368)
T 3h2y_A 219 PGIINH 224 (368)
T ss_dssp CCBCCT
T ss_pred CCcCcH
Confidence 999754
No 200
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.20 E-value=3.6e-07 Score=81.76 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCceeEEecCCcc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i~v~g~~ 72 (394)
++|..++|+||||||||||+++|+|..... ...+.+|+.|..|. ++|..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~ 52 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD 52 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce
Confidence 357899999999999999999999975322 23445566677775 35543
No 201
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.19 E-value=9e-07 Score=78.41 Aligned_cols=60 Identities=27% Similarity=0.321 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+|+|+|++|||||||++.|++........|..+.......+.+.+.. ..+.++|+||..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR---------------IKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeE---------------EEEEEEECCCch
Confidence 589999999999999999999875432222221111222233333321 358999999974
No 202
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.19 E-value=5.7e-07 Score=78.42 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+..+++++|++|+|||||++.+++.... ....|...+...+.+.+ ..+.++|++|.....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 79 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETT-----------------EEEEEEEESSSGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999987431 11112222333444433 348999999975322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|+++.|+|+
T Consensus 80 ~-------~~~~~~~~~d~ii~v~D~ 98 (181)
T 2h17_A 80 S-------SWNTYYTNTEFVIVVVDS 98 (181)
T ss_dssp C-------GGGGGGTTCCEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 112334566777666655
No 203
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.19 E-value=6.9e-07 Score=87.14 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=39.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
..+.+|+++||+|+||||||||+++|+|. ..|+.|.+.+.|++.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-----------~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG-----------ASADIIVLALIGERG 109 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCCH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCEEEEEEecccH
Confidence 55789999999999999999999999999 678999999888764
No 204
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.18 E-value=1.1e-06 Score=75.09 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++++|++|||||||++.+++.... .. ..|.......+.+.+ ..+.++|+||....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 64 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKN-----------------LKFQVWDLGGLTSI 64 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETT-----------------EEEEEEEECCCGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECC-----------------EEEEEEECCCChhh
Confidence 34578999999999999999999876431 11 112223333344432 34899999997532
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|+++.|+|+
T Consensus 65 ~~-------~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 65 RP-------YWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp GG-------GGGGGCTTCSEEEEEEET
T ss_pred hH-------HHHHHhccCCEEEEEEEC
Confidence 21 111234556666666555
No 205
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.17 E-value=1.6e-07 Score=81.70 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+|+|+|++|+|||||++.+++........|..+.......+.+++.. ..+.++|++|.......
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 73 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFRTI 73 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhhhh
Confidence 589999999999999999999764322222322333333445555432 34899999996532211
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. ...++.+|+++.|+|+
T Consensus 74 ~-------~~~~~~~d~~i~v~d~ 90 (183)
T 2fu5_C 74 T-------TAYYRGAMGIMLVYDI 90 (183)
T ss_dssp C-------CTTTTTCSEEEEEEET
T ss_pred H-------HHHHhcCCEEEEEEEC
Confidence 1 1223456666665444
No 206
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.16 E-value=7.7e-07 Score=77.63 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++++|++|||||||++.+++.. ...+. .|...+...+.+++ ..+.++|+||....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG-----------------FKLNIWDVGGQKSL 75 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT-----------------EEEEEEEECCSHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 356799999999999999999999875 22111 13333344455443 34899999997532
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... ....++.+|+++.|+|+
T Consensus 76 ~~~-------~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 76 RSY-------WRNYFESTDGLIWVVDS 95 (186)
T ss_dssp HTT-------GGGGCTTCSEEEEEEET
T ss_pred HHH-------HHHHhcCCCEEEEEEEC
Confidence 211 11233456666665544
No 207
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.16 E-value=7.8e-08 Score=87.13 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+..+..|++++|+||||||||||+++|+|.
T Consensus 13 ~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 13 KHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345566789999999999999999999999997
No 208
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=1.4e-06 Score=94.63 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=47.7
Q ss_pred Hhhhhcc-CC---CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh---
Q 016139 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (394)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L--- 195 (394)
+.+++++ .+ |.++++| ||+++||+.+.+.++..+..+. .....+.. .+|+++.+.. ||+| ..|
T Consensus 814 V~LAraL~~~p~~p~LLILD---EPTsGLD~~~~~~L~~lL~~L~----~~G~TVIv-I~HdL~~i~~-ADrI-ivLgp~ 883 (916)
T 3pih_A 814 IKLASELRKRDTGRTLYILD---EPTVGLHFEDVRKLVEVLHRLV----DRGNTVIV-IEHNLDVIKN-ADHI-IDLGPE 883 (916)
T ss_dssp HHHHHHHTSCCCSSEEEEEE---STTTTCCHHHHHHHHHHHHHHH----HTTCEEEE-ECCCHHHHTT-CSEE-EEEESS
T ss_pred HHHHHHHhhCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHH----hcCCEEEE-EeCCHHHHHh-CCEE-EEecCC
Confidence 4455665 33 5799999 9999999998655444332221 11111211 2399987754 9999 777
Q ss_pred ---cCCCceecCCC
Q 016139 196 ---QDGKDVRLGDW 206 (394)
Q Consensus 196 ---~~g~~~~~~~~ 206 (394)
..|+++..|+.
T Consensus 884 gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 884 GGKEGGYIVATGTP 897 (916)
T ss_dssp SGGGCCEEEEEESH
T ss_pred CCCCCCEEEEEcCH
Confidence 78888888764
No 209
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.15 E-value=4.8e-07 Score=91.78 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=41.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchh
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~ 74 (394)
.....++. +++||+||||||||||+++|+|. ..|++|.|.++|.++.
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-----------LIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH-----------HCCCTTTCCCCCTTSC
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEEcc
Confidence 44556788 99999999999999999999999 6799999999987654
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.14 E-value=7.5e-07 Score=81.23 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=25.0
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.++--..++.|..++|+||||||||||+++|+|..
T Consensus 6 ~~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 6 IHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccccccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34445567889999999999999999999999984
No 211
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.14 E-value=4.3e-07 Score=98.77 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=46.2
Q ss_pred Hhhhhcc-CC---CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh---
Q 016139 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (394)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L--- 195 (394)
+.+++++ .+ |+++++| ||++++|+.+...+...+..+ ......+.. .+|++..+ ..||++ ..|
T Consensus 872 v~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~~lL~~L----~~~G~TVIv-isHdl~~i-~~aDrI-ivL~p~ 941 (993)
T 2ygr_A 872 VKLASELQKRSTGRTVYILD---EPTTGLHFDDIRKLLNVINGL----VDKGNTVIV-IEHNLDVI-KTSDWI-IDLGPE 941 (993)
T ss_dssp HHHHHHHSSCCCSSEEEEEE---STTTTCCHHHHHHHHHHHHHH----HHTTCEEEE-ECCCHHHH-TTCSEE-EEEESS
T ss_pred HHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHH----HhCCCEEEE-EcCCHHHH-HhCCEE-EEECCC
Confidence 4455555 33 5899999 999999998865444432221 111112211 23999886 579999 777
Q ss_pred ---cCCCceecCC
Q 016139 196 ---QDGKDVRLGD 205 (394)
Q Consensus 196 ---~~g~~~~~~~ 205 (394)
.+|+++..++
T Consensus 942 gg~~~G~Iv~~G~ 954 (993)
T 2ygr_A 942 GGAGGGTVVAQGT 954 (993)
T ss_dssp STTSCSEEEEEEC
T ss_pred cCCCCCEEEEecC
Confidence 5788877664
No 212
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.14 E-value=1.3e-06 Score=75.70 Aligned_cols=60 Identities=27% Similarity=0.315 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++++|++|+|||||++.+++.... ..+..++.......+.+.+.. ..+.++|+||...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEE---------------EEEEEECCCCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEE---------------EEEEEEECCCCHh
Confidence 58999999999999999999976432 233333322223334444432 3478999999753
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.14 E-value=2.4e-06 Score=88.68 Aligned_cols=67 Identities=24% Similarity=0.166 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.+|+|+|+||+|||||+|.|+|....+ +++++|...+.|...+.- ++ |. .....+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~-~~--------~~-~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCV-PH--------PK-KPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEE-EC--------SS-STTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeec-cc--------cc-CCCceEEEecCCCcCccc
Confidence 578999999999999999999986544 788888888888754310 00 00 012458999999997543
No 214
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.13 E-value=4.7e-07 Score=98.18 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred Hhhhhcc-CC---CCeEEecCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh---
Q 016139 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (394)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~i~~el~~~di~~l~k~l~~~~~~~~~~~~h~~~~~~~l~~ri~~~L--- 195 (394)
+.+++++ .+ |+++++| ||++++|+.+...++..+..+ ......+.. .+|++..+ ..||++ ..|
T Consensus 854 v~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~~lL~~L----~~~G~TVIv-isHdl~~i-~~aDrI-ivL~p~ 923 (972)
T 2r6f_A 854 VKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLLDVLHRL----VDNGDTVLV-IEHNLDVI-KTADYI-IDLGPE 923 (972)
T ss_dssp HHHHHHHSSCCCSCEEEEEE---CTTTTCCHHHHHHHHHHHHHH----HHTTCEEEE-ECCCHHHH-TTCSEE-EEECSS
T ss_pred HHHHHHHhcCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHH----HhCCCEEEE-EcCCHHHH-HhCCEE-EEEcCC
Confidence 3455555 33 5899999 999999998865444433221 111112211 23999876 579999 777
Q ss_pred ---cCCCceecCC
Q 016139 196 ---QDGKDVRLGD 205 (394)
Q Consensus 196 ---~~g~~~~~~~ 205 (394)
.+|+++..++
T Consensus 924 gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 924 GGDRGGQIVAVGT 936 (972)
T ss_dssp STTSCCSEEEEES
T ss_pred CCCCCCEEEEecC
Confidence 5788887664
No 215
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=1.8e-06 Score=75.95 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=46.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
.+|+|+|++|+|||||+|.+++..... .+.+++|. ....+.+.+. ...+.++|+||.....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNE---------------LHKFLIWDTAGQERFH 86 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSS---------------EEEEEEEEECCSGGGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCE---------------EEEEEEEcCCCchhhH
Confidence 589999999999999999999875321 22222111 1222333322 2358999999954321
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|+++.|+|+
T Consensus 87 ~-------~~~~~~~~~d~iilV~d~ 105 (192)
T 2fg5_A 87 S-------LAPMYYRGSAAAVIVYDI 105 (192)
T ss_dssp G-------GTHHHHTTCSEEEEEEET
T ss_pred h-------hhHHhhccCCEEEEEEeC
Confidence 1 112344556666665544
No 216
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=1.1e-06 Score=76.98 Aligned_cols=79 Identities=23% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+++++|++|||||||++.+++.... . ...|+..+...+.+.+ ..+.++|++|.....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 74 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETT-----------------EEEEEEECCC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999976432 1 1113333444555443 348999999985322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|+++.|+|+
T Consensus 75 ~-------~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 75 S-------SWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp G-------GGHHHHTTCCEEEEEEET
T ss_pred H-------HHHHHhcCCCEEEEEEeC
Confidence 1 112345667777776665
No 217
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.12 E-value=8.4e-07 Score=77.88 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+|+|+|++|+|||||++.+++........ .|...+...+...+ ..+.++|++|....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN-----------------VTIKLWDIGGQPRF 80 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT-----------------EEEEEEEECCSHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC-----------------EEEEEEECCCCHhH
Confidence 335789999999999999999999764422111 12222223333222 35899999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|+++.|+|+
T Consensus 81 ~~-------~~~~~~~~~d~ii~v~D~ 100 (188)
T 1zd9_A 81 RS-------MWERYCRGVSAIVYMVDA 100 (188)
T ss_dssp HT-------THHHHHTTCSEEEEEEET
T ss_pred HH-------HHHHHHccCCEEEEEEEC
Confidence 11 112334566666665554
No 218
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.11 E-value=2.3e-06 Score=76.41 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=51.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+++|+|++|+|||||++.+++... ..+++.|+.......+.+++.. ..+.++|++|......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYSR 72 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 36899999999999999999997643 2344444443334445555432 3589999999754321
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. . ...++.+|+++.|+|+
T Consensus 73 ~----~---~~~~~~~d~~ilv~d~ 90 (212)
T 2j0v_A 73 L----R---PLSYRGADIFVLAFSL 90 (212)
T ss_dssp ---------CGGGTTCSEEEEEEET
T ss_pred H----H---HhhccCCCEEEEEEEC
Confidence 1 1 1234556666665443
No 219
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.11 E-value=6.5e-07 Score=77.67 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++++|++|||||||++.+++.... . ...|.......+.+++ ..+.++|+||....
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--T-TKPTIGFNVETLSYKN-----------------LKLNVWDLGGQTSI 75 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--E-ECSSTTCCEEEEEETT-----------------EEEEEEEEC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--c-cCCcCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 34679999999999999999999965321 0 1112223334444433 34899999998642
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|+++.|+|+
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEET
T ss_pred HH-------HHHHHhccCCEEEEEEEC
Confidence 21 112334567777776665
No 220
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.10 E-value=1.8e-06 Score=73.30 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
+++++|++|+|||||++.+++.... ...| |+......+...+ ..+.++|+||..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-----------------EEEEEEEcCCCh
Confidence 6899999999999999999875431 1222 3333344444432 358999999974
No 221
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.10 E-value=1.1e-06 Score=86.14 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=38.3
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (394)
...++.|+.++|+||||||||||+++|+|. +.|+.|.|.+.|.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~-----------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQE-----------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTT-----------SCTTSCEEEEESS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhc-----------CCCCceEEEECCc
Confidence 345678999999999999999999999999 6789999999874
No 222
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.09 E-value=1e-06 Score=76.98 Aligned_cols=75 Identities=27% Similarity=0.380 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcee----EEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G----~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
...+++++|++|||||||++.+++... ....|+.| .+.+++ ..+.++|++|.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-------~~~~~t~g~~~~~~~~~~-----------------~~l~i~Dt~G~ 70 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-------SHITPTQGFNIKSVQSQG-----------------FKLNVWDIGGQ 70 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-------EEEEEETTEEEEEEEETT-----------------EEEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-------CcccCcCCeEEEEEEECC-----------------EEEEEEECCCC
Confidence 357899999999999999999998632 22234444 333332 34889999986
Q ss_pred cccccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 99 ~~~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.... ......++.+|+++.|+|+
T Consensus 71 ~~~~-------~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 71 RKIR-------PYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp GGGH-------HHHHHHHTTCSEEEEEEET
T ss_pred HHHH-------HHHHHHhCCCCEEEEEEEC
Confidence 4311 1122334556666665544
No 223
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=2.2e-06 Score=75.24 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=42.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++++|++|+|||||++.+++... ..+++.|+.......+.+++.. ..+.++|++|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~ 78 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcc
Confidence 5899999999999999999998643 2344444444444455555432 2488999999754
No 224
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.08 E-value=1.7e-06 Score=86.91 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=39.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
..+.+|++++|+|+||||||||+++|+|. ..|+.|.+.+.|++
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-----------~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY-----------TRADVIVVGLIGER 194 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCeEEEEEecee
Confidence 56889999999999999999999999999 67999999999983
No 225
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.08 E-value=4.8e-06 Score=72.43 Aligned_cols=55 Identities=31% Similarity=0.224 Sum_probs=42.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.+++++|++|||||||++.+++.....+..|++|..+....+ . .+.++|+||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~-------------------~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K-------------------NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T-------------------TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C-------------------CEEEEECCCccc
Confidence 378999999999999999999987666777777765543322 1 389999999753
No 226
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.08 E-value=5.1e-06 Score=81.11 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~ 62 (394)
.|+|+|++|||||||+|+|+|..........+|..|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 9999999999999999999997553333334454443
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.07 E-value=6.6e-07 Score=79.01 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCceeEE
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARV 66 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~--~~~p~~T~~p~~G~i 66 (394)
|.+++|+||||||||||+++|+|..... .....+|..|..|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 4579999999999999999999985321 234456666777654
No 228
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.07 E-value=1.6e-06 Score=76.21 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=47.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|.+|||||||++.+++......++.. |...+...+... ...+.++|++|......
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~ 78 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKG-----------------RVAFTVFDMGGAKKFRG 78 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEET-----------------TEEEEEEEECCSGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeC-----------------CEEEEEEECCCCHhHHH
Confidence 468999999999999999999987543312111 222222223222 23589999999754221
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.....++.+|++++|+|+
T Consensus 79 -------~~~~~~~~~d~ii~v~D~ 96 (199)
T 4bas_A 79 -------LWETYYDNIDAVIFVVDS 96 (199)
T ss_dssp -------GGGGGCTTCSEEEEEEET
T ss_pred -------HHHHHHhcCCEEEEEEEC
Confidence 111234566776666555
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.06 E-value=5.8e-07 Score=87.75 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+.+++|+|+||||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999974
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.06 E-value=1.3e-06 Score=78.47 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=34.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CceeEEecCCcc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDER 72 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~---p~~G~i~v~g~~ 72 (394)
.+.|+++||+||||||||||+++|+|. .. ++.|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~-----------~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA-----------LSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH-----------HHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HhhcCCceEEEecCCCc
Confidence 467999999999999999999999998 33 357888877643
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=1.7e-06 Score=82.61 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=38.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEec---CCcchhhhhhhccCCCccccceEEEec
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEIHDI 95 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~~~~l~~~~~~~~~~~~~i~~~D~ 95 (394)
..+..|++++|+||||||||||+|+|+|. ..|++|.|.+ .|+.+......+. ......++|+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~-----------~~~~~G~i~~~~~~g~~~t~~~~~~~----~~~~g~v~q~ 228 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG-----------LKLRVSEVSEKLQRGRHTTTTAQLLK----FDFGGYVVDT 228 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT-----------CCCC-------------CCCSCCEEE----CTTSCEEESS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc-----------ccccccceecccCCCCCceeeeEEEE----cCCCCEEEEC
Confidence 34456899999999999999999999999 6789999988 6655432211110 0112356777
Q ss_pred cccc
Q 016139 96 AGLV 99 (394)
Q Consensus 96 ~gl~ 99 (394)
||+.
T Consensus 229 p~~~ 232 (301)
T 1u0l_A 229 PGFA 232 (301)
T ss_dssp CSST
T ss_pred cCCC
Confidence 7764
No 232
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.06 E-value=3.4e-06 Score=74.85 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCCcccccCC-CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccce
Q 016139 12 PAERPILGRFSS-HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (394)
Q Consensus 12 ~~~~~~~~~i~~-g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i 90 (394)
+..+.....+.. ..+++|+|++|+|||||++.+++...... +..++.......+.+++.. ..+
T Consensus 12 ~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~l 75 (201)
T 2gco_A 12 SGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQ---------------VEL 75 (201)
T ss_dssp TTCCC-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEE---------------EEE
T ss_pred CCcccCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEE---------------EEE
Confidence 334444433332 35899999999999999999998754322 2222222223345555432 248
Q ss_pred EEEeccccc
Q 016139 91 EIHDIAGLV 99 (394)
Q Consensus 91 ~~~D~~gl~ 99 (394)
.++|+||..
T Consensus 76 ~i~Dt~G~~ 84 (201)
T 2gco_A 76 ALWDTAGQE 84 (201)
T ss_dssp EEECCCCSG
T ss_pred EEEECCCch
Confidence 899999964
No 233
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.05 E-value=1.9e-06 Score=76.70 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+|+|+|++|+|||||++.+++........|..+.......+.+++.. ..+.++|++|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 89 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR---------------VKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEE---------------EEEEEECCTTCG
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 3689999999999999999999765322211211222223444454421 358999999864
No 234
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=4.1e-06 Score=71.32 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..+++++|++|||||||+|.+++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998643
No 235
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=83.58 Aligned_cols=33 Identities=33% Similarity=0.310 Sum_probs=28.3
Q ss_pred CcccccCCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 016139 16 PILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 16 ~~~~~i~~g~~--vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.....+..|++ +||+|+||||||||+|+|+|..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34456789999 9999999999999999999985
No 236
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.04 E-value=1.7e-07 Score=83.12 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
.+|+|+|++|||||||+|.|++........|..|.......+.+++.. ..+.++|++|.......
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRTI 98 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHHHH
Confidence 589999999999999999999875544444555555566666666532 24899999995432221
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
....++.+|+++.|+|+
T Consensus 99 -------~~~~~~~~d~~i~v~d~ 115 (199)
T 3l0i_B 99 -------TSSYYRGAHGIIVVYDV 115 (199)
T ss_dssp -------SCC--CCCSEEEECC-C
T ss_pred -------HHHHhhcCCEEEEEEEC
Confidence 11334567777666554
No 237
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.04 E-value=2.3e-06 Score=76.32 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=49.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+..+|+++|++|||||||++.+++... ...++.++.......+.+++.. ..+.++|+||....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDY 91 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CE---------------EEEEEEEECCSGGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 3457999999999999999999997533 2334444433334444555432 24679999997432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .....++.+|+++.|+|+
T Consensus 92 ~~-------~~~~~~~~~d~~i~v~d~ 111 (204)
T 4gzl_A 92 DR-------LRPLSYPQTDVFLICFSL 111 (204)
T ss_dssp TT-------TGGGGCTTCSEEEEEEET
T ss_pred HH-------HHHHHhccCCEEEEEEEC
Confidence 21 111234556666555443
No 238
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.04 E-value=2.8e-06 Score=86.50 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+++|+|.+|||||||+|.|++... .. .+.|+.++.+.+.+.+ ..+.++||+|.....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKN-----------------VKFNVWDVGGQDKIR 380 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSS-----------------CEEEEEEECCCGGGS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCC-----------------EEEEEEECCCcHHHH
Confidence 346899999999999999999998762 22 3447777777777654 348999999954322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|++++|+|+
T Consensus 381 ~-------~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 381 P-------LWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp G-------GGGGGGTTCCEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 122445677887777665
No 239
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=2.2e-06 Score=76.44 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+|+++|++|||||||++.+++..... .++.++.......+.+++.. ..+.++|+||...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEE---------------EEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEE---------------EEEEEEECCCcHH
Confidence 3589999999999999999999875422 22222222222234444321 3488999999643
No 240
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.03 E-value=5.5e-07 Score=95.68 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCcc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFC 57 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~ 57 (394)
..+.+|+|+|.+|+|||||+|+|+|....+ +..|.|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 457899999999999999999999987644 555544
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.03 E-value=3.6e-06 Score=78.85 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~-~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
.+++++|.||+|||||+|.|+|... ..++.|++|.... .+.++ ..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE------------------NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT------------------TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC------------------CCEEEEECCCcccC
Confidence 5999999999999999999999865 4477788776543 23322 24899999999754
No 242
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.02 E-value=1.5e-06 Score=75.16 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+++++|++|+|||||++.+++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999764
No 243
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.02 E-value=1.9e-05 Score=85.95 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=25.9
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+..|++++|+|||||||||||+++.+.
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 344677999999999999999999999754
No 244
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.02 E-value=2.9e-06 Score=74.05 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
.+++++|++|+|||||++.+++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998643
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.01 E-value=2.7e-06 Score=75.57 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+..|+++||+||||||||||+++|+|..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999999973
No 246
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.00 E-value=1.6e-05 Score=72.10 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+|.|||.+|+|||||++.++..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 58999999999999999999865
No 247
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.00 E-value=2.8e-06 Score=76.69 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=27.3
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.++.|++++|+||||||||||+++|+|.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999985
No 248
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.00 E-value=2.3e-06 Score=76.90 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
..+|+|+|++|||||||++.+++.... ..++.++.......+.+++.. ..+.++|++|......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQDDYDR 97 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC--------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCchhhhH
Confidence 368999999999999999999986432 223333322223344444432 2488999999643221
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. . ...++.+|+++.|+|+
T Consensus 98 ~----~---~~~~~~~d~~i~v~d~ 115 (214)
T 2j1l_A 98 L----R---PLFYPDASVLLLCFDV 115 (214)
T ss_dssp --------------CEEEEEEEEET
T ss_pred H----H---HHHhccCCEEEEEEEC
Confidence 1 1 1234556666665443
No 249
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3e-06 Score=74.24 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
....+++++|++|||||||++.|++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345699999999999999999999874
No 250
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=3.7e-06 Score=73.79 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (394)
+|..++|+||||||||||+++|++.... . ...+.+|..|..|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 4789999999999999999999987431 1 34556666666664
No 251
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.98 E-value=3.6e-06 Score=75.34 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..+|+|+|++|+|||||++.+++..... .+..++.......+.+++. ...+.++|++|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPY 88 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSSS---------------EEEEEEEEECCSGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECCE---------------EEEEEEEeCCCcHh
Confidence 3589999999999999999999874422 2221111111223333332 13589999999643
No 252
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.97 E-value=1.7e-06 Score=76.32 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+++++|++|||||||++.+++.... .. ..|+......+.+.+ ..+.++|+||.....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN-----------------ICFTVWDVGGQDKIR 87 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999875321 11 112222223333322 358999999975321
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
. .....++.+|+++.|+|+
T Consensus 88 ~-------~~~~~~~~~d~iilv~D~ 106 (192)
T 2b6h_A 88 P-------LWRHYFQNTQGLIFVVDS 106 (192)
T ss_dssp T-------THHHHHHTCCEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 122345677777776655
No 253
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.97 E-value=5.5e-06 Score=78.10 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..+|+|+|.+|||||||+|+|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 35899999999999999999999865
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.97 E-value=4e-06 Score=81.89 Aligned_cols=63 Identities=21% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CceeEEecC-Ccchhhh--h-hhccCCCccccceEEEecc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIP-DERFEWL--C-QLFKPKSAVPAFLEIHDIA 96 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~-p~~G~i~v~-g~~~~~l--~-~~~~~~~~~~~~i~~~D~~ 96 (394)
..|++++|+|+||||||||+|+|+|. .. |.+|.|.+. |...... . ..+.|+ ...++|++
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q-----~~~l~dtp 276 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL-----------QNEILTNDVSNVSGLGQHTTTAARLYHFPH-----GGDVIDSP 276 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC-----------SSCCCCC-------------CCCEEEECTT-----SCEEEECH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc-----------ccccccCCccccCCCCccceEEEEEEEECC-----CCEecCcc
Confidence 46899999999999999999999998 55 778887765 4322110 0 122332 23578888
Q ss_pred cccc
Q 016139 97 GLVR 100 (394)
Q Consensus 97 gl~~ 100 (394)
++..
T Consensus 277 gv~e 280 (358)
T 2rcn_A 277 GVRE 280 (358)
T ss_dssp HHHT
T ss_pred cHHH
Confidence 8765
No 255
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.96 E-value=2.4e-06 Score=86.66 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
......+..|.+++|+|+||||||||+++|+|. ..++.|.|.+.+.+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl-----------l~~~~G~V~l~g~D 330 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ-----------FEQQGKSVMLAAGD 330 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEECCC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHH-----------hhhcCCeEEEecCc
Confidence 344556889999999999999999999999998 66788999886544
No 256
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.96 E-value=2.4e-06 Score=81.70 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=41.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEec---CCcchhhhhhhccCCCccccceEE
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEI 92 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v---~g~~~~~l~~~~~~~~~~~~~i~~ 92 (394)
..+..+..|.+++|+|+||||||||+|+|+ . ..|.+|.|.+ .|+........+. ....-.+
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~-----------~~~~~G~i~~~~~~G~~~t~~~~~~~----~~~~g~v 220 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT-G-----------EELRTQEVSEKTERGRHTTTGVRLIP----FGKGSFV 220 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-S-----------CCCCCSCC---------CCCCEEEEE----ETTTEEE
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH-H-----------hhCcccccccccCCCCCceeeEEEEE----cCCCcEE
Confidence 334455678999999999999999999999 7 5688888887 6654322111110 0112356
Q ss_pred Eeccccc
Q 016139 93 HDIAGLV 99 (394)
Q Consensus 93 ~D~~gl~ 99 (394)
.|+||+.
T Consensus 221 ~d~pg~~ 227 (302)
T 2yv5_A 221 GDTPGFS 227 (302)
T ss_dssp ESSCCCS
T ss_pred EECcCcC
Confidence 7888765
No 257
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.96 E-value=4.1e-06 Score=75.38 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+|.|+|++|||||||++.+++.... ..++.|+.......+.+++. ...+.++|++|....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSPYY 88 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCHhH
Confidence 34579999999999999999999986432 22222221111222333332 134889999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. +.. ..++.+|+++.|+|+
T Consensus 89 ~~----~~~---~~~~~~d~~i~v~d~ 108 (214)
T 3q3j_B 89 DN----VRP---LCYSDSDAVLLCFDI 108 (214)
T ss_dssp TT----TGG---GGCTTCSEEEEEEET
T ss_pred HH----HHH---HHcCCCeEEEEEEEC
Confidence 21 111 223556666665544
No 258
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.95 E-value=6.1e-06 Score=86.35 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ceeEEecCCcch
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERF 73 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p-~~G~i~v~g~~~ 73 (394)
.+||+|+||||||||+++|+|. ..| ++|.|++.|.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl-----------~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV-----------ALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC-----------C-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhCC-----------CCCCCCCeEEEcCEEE
Confidence 4999999999999999999998 457 799999888653
No 259
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.95 E-value=3.8e-06 Score=87.94 Aligned_cols=83 Identities=19% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------------------------CCccccCCceeEEecCC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN-------------------------------FPFCTIEPNEARVNIPD 70 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~-------------------------------~p~~T~~p~~G~i~v~g 70 (394)
.....|+|+|.+|+|||||++.|++....+.. .++.|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34579999999999999999999977443322 13445554444444433
Q ss_pred cchhhhhhhccCCCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
..+.++|+||.... .......++.+|++++|+++
T Consensus 245 -----------------~~~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa 278 (611)
T 3izq_1 245 -----------------ANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDC 278 (611)
T ss_dssp -----------------CEEEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEEC
T ss_pred -----------------ceEEEEECCCCccc-------HHHHHHHHhhcCceEEEEEC
Confidence 35899999997431 22223344556776666655
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.95 E-value=2.9e-06 Score=81.27 Aligned_cols=37 Identities=35% Similarity=0.437 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CceeEEec
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNI 68 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~--p~~G~i~v 68 (394)
...|+++||+|+||||||||+++|+|. .. |++|.|.+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~-----------l~~~~~~G~i~v 115 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL-----------LSRWPEHRRVEL 115 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH-----------HTTSTTCCCEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH-----------HhhCCCCCeEEE
Confidence 367899999999999999999999997 45 78888776
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.95 E-value=4.2e-06 Score=75.03 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCceeEEecCCcc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~i~v~g~~ 72 (394)
.|..++|+||+|||||||++.|++.... . ...+.||+.|..|. ++|.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~ 67 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKE 67 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSS
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--ecccc
Confidence 5789999999999999999999987652 2 56778899998886 55544
No 262
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.95 E-value=2.5e-06 Score=74.64 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+..+++++|++|||||||++.+++.... ...| |+......+.+.+ ..+.++|+||.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGVR 80 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 5679999999999999999999865321 1111 3333334444432 358999999975432
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... . ..++.+|+++.|+|+
T Consensus 81 ~~~----~---~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 81 PYW----R---CYFSDTDAVIYVVDS 99 (189)
T ss_dssp CCC----S---SSSTTCCEEEEEEET
T ss_pred HHH----H---HHhhcCCEEEEEEeC
Confidence 211 1 223567777776655
No 263
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.18 E-value=1.2e-06 Score=77.86 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
....+++++|++|||||||++.+++... ...++.++.......+.+++. ...+.++|+||....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDY 91 (204)
Confidence 3457899999999999999999986532 122222332222223333322 124679999997543
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
... ....++.+|+++.|+|+.
T Consensus 92 ~~~-------~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 92 DRL-------RPLSYPQTDVFLICFSLV 112 (204)
Confidence 211 113456788888877763
No 264
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.93 E-value=3.6e-06 Score=80.53 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=28.7
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+++|++++|+||||||||||+++|+|.
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3567899999999999999999999999998
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.92 E-value=1.2e-05 Score=72.38 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=27.0
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|.++.|+.++|+||||||||||++.|++.
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999976
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.91 E-value=3.7e-06 Score=86.14 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=36.8
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (394)
.+..|..++|+||||||||||+++|+|. +.|+.|.+++.|.
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~-----------i~~~~giitied~ 296 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMF-----------IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGG-----------SCTTCCEEEEESS
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhh-----------CCCCCCEEEEcCc
Confidence 4567889999999999999999999998 6789999998874
No 267
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.91 E-value=4.3e-06 Score=73.11 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.+++|+|++|||||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999863
No 268
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.90 E-value=3.2e-06 Score=93.16 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEec----cccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI----AGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~----~gl~ 99 (394)
|.+++|+||||+|||||++++ |+.. +-. ...+|.|+.. ..+.++|. .|..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~-----------~~a------------qiG~~Vpq~~--~~l~v~d~I~~rig~~ 842 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA-----------VMA------------QMGCYVPAEV--CRLTPIDRVFTRLGAS 842 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH-----------HHH------------TTTCCEESSE--EEECCCSBEEEECC--
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH-----------HHh------------heeEEeccCc--CCCCHHHHHHHHcCCH
Confidence 799999999999999999999 8731 100 0001333331 11222221 1221
Q ss_pred ccccCCCCCchhhhhHHHhhhhHHhhhhc-cCCCCeEEecCCCCCcchHHHHHH-HHHHhHHHHHHHHHHHHHHhhhccc
Q 016139 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA-FEDPDIIHVDDSVDPVRDLEVISA-ELRLKDIEFMERRIEDVEKSMKRSN 177 (394)
Q Consensus 100 ~~~~~~~~l~~~~l~~l~~~d~il~vv~a-~~~~~vl~ld~~~eP~~~ld~i~~-el~~~di~~l~k~l~~~~~~~~~~~ 177 (394)
..... +. ..|...+... ..+.+ ..+|.++++| ||.+++|+.+. .+....++.+. +.....+.. .
T Consensus 843 d~~~~--~~-stf~~em~~~----a~al~la~~~sLlLLD---Ep~~Gtd~~dg~~~~~~il~~L~---~~~g~~vl~-~ 908 (1022)
T 2o8b_B 843 DRIMS--GE-STFFVELSET----ASILMHATAHSLVLVD---ELGRGTATFDGTAIANAVVKELA---ETIKCRTLF-S 908 (1022)
T ss_dssp ----------CHHHHHHHHH----HHHHHHCCTTCEEEEE---CTTTTSCHHHHHHHHHHHHHHHH---HTSCCEEEE-E
T ss_pred HHHhh--ch-hhhHHHHHHH----HHHHHhCCCCcEEEEE---CCCCCCChHHHHHHHHHHHHHHH---hcCCCEEEE-E
Confidence 11111 11 1233333332 22233 3789999999 99999998874 33322222211 111111212 2
Q ss_pred chhhHHHHHHHHHHHHHhcCCCce
Q 016139 178 DKQLKIEHELCQRVKAWLQDGKDV 201 (394)
Q Consensus 178 ~h~~~~~~~l~~ri~~~L~~g~~~ 201 (394)
+|+.+....+++++ .++ +|++.
T Consensus 909 TH~~el~~~~~d~~-~v~-~g~~~ 930 (1022)
T 2o8b_B 909 THYHSLVEDYSQNV-AVR-LGHMA 930 (1022)
T ss_dssp CCCHHHHHHTSSCS-SEE-EEEEE
T ss_pred eCCHHHHHHhCCcc-eee-cCeEE
Confidence 49998887777766 333 35554
No 269
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=1e-05 Score=70.98 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..+|+|+|++|||||||+|.|++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 46899999999999999999998643
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.89 E-value=2.3e-06 Score=82.80 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=35.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
..+|++++|+||||||||||++.|+|. ..|+.|.|.+.|.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~-----------l~~~~g~V~l~g~D 166 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW-----------LKNHGFSVVIAASD 166 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHhcCCEEEEEeec
Confidence 357899999999999999999999998 66888988877654
No 271
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.88 E-value=8.6e-06 Score=84.17 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCccccCCceeEEec------CCcc--------hhhhhh-------
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP---AENFPFCTIEPNEARVNI------PDER--------FEWLCQ------- 78 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~---~~~~p~~T~~p~~G~i~v------~g~~--------~~~l~~------- 78 (394)
.-..|+|+|.+|||||||+|.|+|.... +++.|.||. ..+.+.- .|.. +..+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~--~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC--FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS--EEEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce--EEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3469999999999999999999998763 567777643 1222110 1110 000000
Q ss_pred ----hccCCCccccceEEEecccccccccC--CCCC--chhhhhHHHhhhhHHhhhhcc
Q 016139 79 ----LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGL--GNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 79 ----~~~~~~~~~~~i~~~D~~gl~~~~~~--~~~l--~~~~l~~l~~~d~il~vv~a~ 129 (394)
+..|. ....++.++||||+...... ...+ .......++.+|++++|+|+.
T Consensus 142 ~~~~~~~~~-~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~ 199 (550)
T 2qpt_A 142 RFMCAQLPN-QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAH 199 (550)
T ss_dssp TEEEEECCC-HHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETT
T ss_pred cceEEeccc-cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 00010 00136899999999763321 1111 122234567889998888874
No 272
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.87 E-value=1.4e-06 Score=93.85 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|.+++|+||||||||||+++|+|.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 57899999999999999999999986
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.86 E-value=7.8e-06 Score=79.69 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=36.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCce----eE-EecCCcc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE----AR-VNIPDER 72 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~----G~-i~v~g~~ 72 (394)
+.++.|.+++|+|+||||||||++.|++... ..|+. |. +++++..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~---------~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---------LPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT---------SCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhc---------cchhcCCCCCeEEEEeCCC
Confidence 6788999999999999999999999998731 24555 56 7777654
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=1.1e-05 Score=72.54 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (394)
++|..++|+||||||||||++.|++.... . ...+.+|..|..|.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 46889999999999999999999988543 2 44556666666653
No 275
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.82 E-value=5e-06 Score=79.84 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|+++||+||||||||||+++|+|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 788999999999999999999999998
No 276
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.82 E-value=1.1e-05 Score=71.19 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEe--cC-CcchhhhhhhccCCCccccceEEEecccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN--IP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~--v~-g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
..++.|+|.+|||||||++.+++..... +..+..+....+. +. +. ...+.++|++|...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSS---------------FVNFQIWDFPGQMD 81 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTT---------------SCCEEEEECCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCC---------------eeEEEEEECCCCHH
Confidence 4699999999999999999999853211 2222223333332 21 11 23589999998643
Q ss_pred cccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... ........++.+|+++.|+|+
T Consensus 82 ~~~----~~~~~~~~~~~~~~~i~v~d~ 105 (196)
T 3llu_A 82 FFD----PTFDYEMIFRGTGALIYVIDA 105 (196)
T ss_dssp TTC----TTCCHHHHHHTCSEEEEEEET
T ss_pred HHh----hhhhcccccccCCEEEEEEEC
Confidence 221 110002456678877776665
No 277
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.81 E-value=1.5e-05 Score=70.28 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
.+++|+|.+|+|||||+|.++|..... +.++.++.......+.++|.. ..+.++|++|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENK 67 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCc
Confidence 589999999999999999999754332 344444444344556666642 236788998754
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.81 E-value=1.3e-05 Score=71.20 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+.+|..++|+|+|||||||++++|.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999983
No 279
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.80 E-value=1.8e-06 Score=88.86 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
+..+++|+|.+|+|||||++.|++........|+.|.+.....+.+++ ...++++||||.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChHHHH
Confidence 345789999999999999999998765556677777777666655532 1247899999964322
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... ...++.+|+++.|+++
T Consensus 67 ~~~-------~~~~~~aD~vILVVDa 85 (537)
T 3izy_P 67 AMR-------ARGTQVTDIVILVVAA 85 (537)
T ss_dssp TSB-------BSSSBSBSSCEEECBS
T ss_pred HHH-------HHHHccCCEEEEEEEC
Confidence 211 1223446666666655
No 280
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=3.9e-06 Score=73.32 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=25.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..|..++|+||||+|||||++++++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999987
No 281
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.79 E-value=9.4e-06 Score=74.80 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=25.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 15 ~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
......+++|.++||+||||||||||+++|+|.
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455677889999999999999999999999985
No 282
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.79 E-value=3.6e-06 Score=81.80 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+..+.+++|+|+||||||||++.|++.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34677899999999999999999999864
No 283
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.79 E-value=4.5e-06 Score=74.79 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+|+|+|++|||||||+|.|++..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999764
No 284
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.78 E-value=1.2e-05 Score=76.62 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=52.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccc
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~ 100 (394)
.....+++++|.+|+|||||++.+++... ...++.++.......+.+++.. ..+.++|++|...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLED 215 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCCGG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEE---------------EEEEEEeCCCchh
Confidence 34567999999999999999999997543 2344444443334444454432 2467999999754
Q ss_pred cccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 101 ~~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
... + ....++.+|+++.|+|+
T Consensus 216 ~~~----~---~~~~~~~~d~~i~v~d~ 236 (332)
T 2wkq_A 216 YDR----L---RPLSYPQTDVFLICFSL 236 (332)
T ss_dssp GTT----T---GGGGCTTCSEEEEEEET
T ss_pred hhH----H---HHHhccCCCEEEEEEeC
Confidence 321 1 11234556666665544
No 285
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.78 E-value=1.2e-05 Score=68.64 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.|..++|+||||+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999997
No 286
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.77 E-value=3.4e-06 Score=75.90 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCcHHHHHHH-HHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNT-LTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~-Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~ 101 (394)
..+|+|+|.+|||||||++. +.+..... .+.+++|...... .+.+. ...+.++|++|....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~---------------~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--HTNRG---------------PIKFNVWDTAGQEKF 77 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEE--EETTE---------------EEEEEEEEECSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEE--EECCE---------------EEEEEEEeCCChHHH
Confidence 46899999999999999999 55542221 3333333332222 22221 134889999996432
Q ss_pred ccCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 102 ~~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. +. ...++.+|+++.|+++
T Consensus 78 ~~----~~---~~~~~~~~~~i~v~d~ 97 (221)
T 3gj0_A 78 GG----LR---DGYYIQAQCAIIMFDV 97 (221)
T ss_dssp SC----CC---HHHHTTCCEEEEEEET
T ss_pred hH----HH---HHHHhcCCEEEEEEEC
Confidence 21 11 1334566666665544
No 287
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.77 E-value=3.3e-05 Score=69.69 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl 98 (394)
.+|+|||.+|+|||||+|.+++..... ..+|.++.......+.++|.. ..+.++|++|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~ 97 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWEN 97 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCC
Confidence 589999999999999999999865433 344444333334456666542 24678899764
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.75 E-value=7.5e-06 Score=81.73 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (394)
..|..++|+||||||||||+++|+|. +.|+.|.|.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~-----------l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE-----------LNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH-----------HCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEEecc
Confidence 57889999999999999999999998 6678888876553
No 289
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.75 E-value=6.9e-06 Score=79.37 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~ 102 (394)
...+|+|+|.+|+|||||++.|++... ...+| |+......+...+ ..+.++|++|.....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR 223 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhHH
Confidence 345899999999999999999987642 12222 4444444444332 348999999943221
Q ss_pred cCCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 103 ~~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
......++.+|+++.|+|+
T Consensus 224 -------~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 224 -------PLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp -------CSHHHHHTTEEEEEEEEET
T ss_pred -------HHHHHHhccCCEEEEEEEC
Confidence 1122445677887777665
No 290
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.74 E-value=6.4e-06 Score=83.81 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~-------~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~ 96 (394)
...++++|.+++|||||++.|++.. ...+..++.|+......+.+++ ..+.++|+|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECC
Confidence 3689999999999999999999875 1223445556655555555543 248999999
Q ss_pred cccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 97 gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
|.... .......++.+|+++.|+++.
T Consensus 82 Gh~~~-------~~~~~~~~~~aD~~ilVvda~ 107 (482)
T 1wb1_A 82 GHADL-------IRAVVSAADIIDLALIVVDAK 107 (482)
T ss_dssp SHHHH-------HHHHHHHTTSCCEEEEEEETT
T ss_pred ChHHH-------HHHHHHHHhhCCEEEEEEecC
Confidence 97431 122334455666666666653
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.73 E-value=1.3e-05 Score=71.67 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|+++||+|+||||||||+++|+|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999997
No 292
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.73 E-value=5.3e-06 Score=81.23 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.3
Q ss_pred cccccCC--CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 17 ILGRFSS--HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 17 ~~~~i~~--g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+.. +++++|+|+||||||||+++|+|.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445666 899999999999999999999998
No 293
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.72 E-value=1.7e-05 Score=79.63 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....++++|.+|+|||||++.|++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999665
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.71 E-value=6.8e-06 Score=71.98 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---eeEEecCCcc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDER 72 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~---~G~i~v~g~~ 72 (394)
..++|+|++|||||||++.|++. ..|. .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCcc
Confidence 58999999999999999999998 5676 8999988743
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.70 E-value=8.2e-06 Score=80.25 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=33.9
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-eeEEecCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPD 70 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~-~G~i~v~g 70 (394)
+..|..++|+||||||||||+++|+|. +.|+ .|.|.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~-----------~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH-----------HHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcCCCcEEEEec
Confidence 678999999999999999999999998 5676 78886544
No 296
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.70 E-value=1.3e-05 Score=81.60 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+++++|.+|+|||||++.|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4469999999999999999999865
No 297
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.67 E-value=2.2e-05 Score=83.99 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|++++|+||||||||||+++++|.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 899999999999999999999987
No 298
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.67 E-value=2.5e-05 Score=69.83 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+++|+|++|+|||||++.|++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999999874
No 299
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.66 E-value=1.7e-06 Score=79.29 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcch
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
++++|+||||||||||+++|+|. ..|++|.|.++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~-----------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA-----------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH-----------HSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcc-----------cccCCCeEEECCEEc
Confidence 57899999999999999999998 678888888877654
No 300
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.66 E-value=1.8e-05 Score=77.41 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~ 49 (394)
..++|+|++|+|||||+|.|++...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999988743
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.63 E-value=2.2e-05 Score=72.18 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCceeEEecCC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIPD 70 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Lt---g~~~~~~~~p~~T~~p~~G~i~v~g 70 (394)
.+++++|+|+||||||||+++|+ |. ..|+.|.+.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-----------~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-----------QHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-----------CCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-----------eEecHHHHHHHH
Confidence 36899999999999999999999 88 457777665543
No 302
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.62 E-value=9.5e-05 Score=65.79 Aligned_cols=59 Identities=24% Similarity=0.274 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~ 99 (394)
..+++|+|++|+|||||++.+++... ...++. ...+...+.+++.. ...+.++|+||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTS--ITDSSAIYKVNNNR--------------GNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCC--CSCEEEEEECSSTT--------------CCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCC--cceeeEEEEecCCC--------------ccEEEEEECCCCh
Confidence 46899999999999999999997642 233442 22344455555321 1358999999975
No 303
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.62 E-value=2.1e-05 Score=83.42 Aligned_cols=81 Identities=22% Similarity=0.160 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc---CCCC---------CCC------CCccccCCceeEEecCCcchhhhhhhccCCCcc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTK---LAIP---------AEN------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg---~~~~---------~~~------~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~ 86 (394)
..++|+|.+|+|||||++.|++ .... ..+ .++.|+....+.+.+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC----------------
Confidence 5899999999999999999984 2110 011 24455555555555543
Q ss_pred ccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
..+.++||||.... .....+.++.+|+++.|+|+.
T Consensus 75 -~~i~liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~ 109 (693)
T 2xex_A 75 -HRVNIIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQ 109 (693)
T ss_dssp -EEEEEECCCCCSSC-------CHHHHHHHHHCSEEEEEEETT
T ss_pred -eeEEEEECcCCcch-------HHHHHHHHHHCCEEEEEECCC
Confidence 35899999998642 234456778888888887774
No 304
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.62 E-value=5.7e-05 Score=80.46 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCce
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~ 63 (394)
-.|+++|.++||||||+|+|+|.......-..||..|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~ 90 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLV 90 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceE
Confidence 489999999999999999999986533333356766643
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.62 E-value=2.1e-05 Score=69.06 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg 46 (394)
|.+++|+||||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999986
No 306
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.61 E-value=6.4e-05 Score=73.15 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~ 62 (394)
-.|+|+|.+|||||||+|+|+|..........+|..|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 48999999999999999999998643222223444443
No 307
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.61 E-value=8.8e-06 Score=83.67 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC----------------C------CCCccccCCceeEEecCCcchhhhhhhcc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA----------------E------NFPFCTIEPNEARVNIPDERFEWLCQLFK 81 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~----------------~------~~p~~T~~p~~G~i~v~g~~~~~l~~~~~ 81 (394)
-..++|+|.+|||||||++.|++....+ . ..++.|+......+.+.+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------- 81 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD----------- 81 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-----------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-----------
Confidence 3589999999999999999997331111 0 013344444444444443
Q ss_pred CCCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 82 ~~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
..+.++||||..+. .......++.+|+++.|+|+.
T Consensus 82 ------~~i~liDTPG~~df-------~~~~~~~l~~aD~allVvDa~ 116 (528)
T 3tr5_A 82 ------YLINLLDTPGHADF-------TEDTYRTLTAVDSALMVIDAA 116 (528)
T ss_dssp ------EEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETT
T ss_pred ------EEEEEEECCCchhH-------HHHHHHHHHhCCEEEEEEeCC
Confidence 34899999997542 223446677888888877774
No 308
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.60 E-value=0.00014 Score=69.76 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.0
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+..| ..+|+|+||||||||+.+|...
T Consensus 20 l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred EecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 345667 9999999999999999999854
No 309
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.60 E-value=1.3e-05 Score=74.36 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCceeEEe
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVN 67 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Lt---g~~~~~~~~p~~T~~p~~G~i~ 67 (394)
..|++++|+|||||||||+.++|+ |. ..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-----------~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW-----------RLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC-----------EEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC-----------CcCCCCcee
Confidence 568899999999999999999999 87 457788776
No 310
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.60 E-value=2.4e-05 Score=71.32 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=26.3
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.....+|+.++|+|++||||||++++|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 334577999999999999999999999975
No 311
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.57 E-value=1.4e-05 Score=83.24 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|+|+|.+|+|||||++.|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 312
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.54 E-value=2.2e-05 Score=74.25 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=29.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+.+..|+.++|+|+||+|||||++.|++.
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999998
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.53 E-value=4.2e-05 Score=68.00 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|..++|+|+|||||||++++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999986
No 314
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.49 E-value=1.1e-05 Score=82.21 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEeccccccccc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~ 103 (394)
.-+++++|.+|+|||||++.|++........++.|.+.....+.+++ ..+.++||||......
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHHHH
Confidence 45799999999999999999997644334445555544333333332 2478999999754322
Q ss_pred CCCCCchhhhhHHHhhhhHHhhhhc
Q 016139 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 104 ~~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.. .+.++.+|+++.|+++
T Consensus 67 ~~-------~~~~~~aD~aILVVda 84 (501)
T 1zo1_I 67 MR-------ARGAQATDIVVLVVAA 84 (501)
T ss_dssp SB-------CSSSBSCSSEEEEEET
T ss_pred HH-------HHHHhhCCEEEEEeec
Confidence 11 1223456666666655
No 315
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=7.5e-05 Score=67.75 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=26.9
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+-++.|+.++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999999999999999999999984
No 316
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.47 E-value=7.5e-05 Score=76.76 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....++|+|.+|||||||++.|++.
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3468999999999999999999964
No 317
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.45 E-value=2.3e-05 Score=77.78 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+++++|.+|+|||||+|+|++..
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc
Confidence 4699999999999999999999864
No 318
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.43 E-value=5.7e-05 Score=65.03 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++..++|+|+|||||||+.++|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999986
No 319
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.43 E-value=0.0001 Score=77.80 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+..+.+++|+|++|+|||||++.|++..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 5667899999999999999999999653
No 320
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.42 E-value=0.00017 Score=72.43 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL---------------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~---------------~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~ 89 (394)
..|+|+|++++|||||+|.|.|. ....-....+|...+.|...+...-.. -.|. .-..+
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~-----~~~~-~~~~~ 141 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLI-----NKPD-GKKVA 141 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEE-----ECSS-SCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCcccc-----ccCC-CCcce
Confidence 57899999999999999999975 222222333666667787654321000 0000 11245
Q ss_pred eEEEeccccccc
Q 016139 90 LEIHDIAGLVRG 101 (394)
Q Consensus 90 i~~~D~~gl~~~ 101 (394)
+.++||+|+...
T Consensus 142 vvllDTeG~~~~ 153 (447)
T 3q5d_A 142 VLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEECCCSS
T ss_pred EEEEcCCccccc
Confidence 889999998643
No 321
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.42 E-value=2.6e-05 Score=74.90 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
.+++|+|+||||||||+|.|+|... ++-..-+.|+.|.+.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHHH
Confidence 5889999999999999999998731 11111235677777776643
No 322
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.42 E-value=0.00011 Score=71.63 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+++|+|+||+|||||++.|+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999744
No 323
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.42 E-value=4e-05 Score=76.04 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+++++|.+|+|||||++.|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999973
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=3.4e-05 Score=68.75 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+.+++|+|+|||||||++++|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999987
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.40 E-value=7.4e-05 Score=65.02 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+..| ..+|+|+||||||||+.+|.+.
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 34456666 8999999999999999999876
No 326
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.38 E-value=5.3e-05 Score=74.36 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccCC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~~ 105 (394)
.++++|.+|+|||||++.|+. ++.|+......+...+ ..+.++|+||..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~f---- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPKT---- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS-----------------SEEEEEECTTTTTC----
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC-----------------eEEEEEECCChHHH----
Confidence 899999999999999999982 2334544444443333 34899999997532
Q ss_pred CCCchhhhhHHHhhhhHHhhhh
Q 016139 106 QGLGNSFLSHIRAVDGIFHVLR 127 (394)
Q Consensus 106 ~~l~~~~l~~l~~~d~il~vv~ 127 (394)
.......++.+|+++.|+|
T Consensus 74 ---~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 74 ---LKSLITALNISDIAVLCIP 92 (370)
T ss_dssp ---HHHHHHHHHTCSEEEEEEC
T ss_pred ---HHHHHHHHHHCCEEEEEEc
Confidence 2233445566777666655
No 327
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.35 E-value=0.00015 Score=77.00 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc---CCCCC---C------C------CCccccCCceeEEecCCcchhhhhhhccCCCcc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTK---LAIPA---E------N------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg---~~~~~---~------~------~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~ 86 (394)
..++|+|.+|+|||||++.|+. ..... . + ....|+......+.+.+
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~---------------- 76 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---------------- 76 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT----------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC----------------
Confidence 5899999999999999999983 21000 0 0 12233333333333322
Q ss_pred ccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 87 ~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
..+.++||||... +.....+.++.+|.++.|+|+.
T Consensus 77 -~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~ 111 (691)
T 1dar_A 77 -HRINIIDTPGHVD-------FTIEVERSMRVLDGAIVVFDSS 111 (691)
T ss_dssp -EEEEEECCCSSTT-------CHHHHHHHHHHCSEEEEEEETT
T ss_pred -eEEEEEECcCccc-------hHHHHHHHHHHCCEEEEEEECC
Confidence 3589999999854 2233456678888888887774
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.33 E-value=0.0001 Score=65.42 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|..++|+|+|||||||+.++|++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999987
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.31 E-value=0.00011 Score=63.50 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+|..++|+|+|||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999975
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.29 E-value=0.00011 Score=68.88 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++.| ++|+||||+|||||+++|+|.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 34555 999999999999999999997
No 331
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.29 E-value=0.00012 Score=75.00 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=27.2
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+..|++++|+|+||+|||||++.++|.
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999987
No 332
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.23 E-value=0.00014 Score=72.79 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.+++++|.+|+|||||++.|++..
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHhhc
Confidence 589999999999999999998764
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.21 E-value=0.0002 Score=63.72 Aligned_cols=29 Identities=45% Similarity=0.539 Sum_probs=26.2
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
-.+.++.+++|+|++||||||+.+.|.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34677899999999999999999999987
No 334
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.20 E-value=8e-05 Score=75.16 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++++|.+|+|||||++.|++.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 335
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.17 E-value=8.6e-05 Score=76.60 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcee-EEe-cCCc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVN-IPDE 71 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G-~i~-v~g~ 71 (394)
.+.+|+.++|+|+||||||||+++|++. ..|..| .+. +++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~-----------L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR-----------LMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH-----------HHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh-----------hcccCCceEEEECCc
Confidence 4678999999999999999999999998 567776 454 5553
No 336
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.13 E-value=0.00014 Score=72.17 Aligned_cols=95 Identities=24% Similarity=0.217 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCceeEEecCCcchhhhhhhccCCC-------c--cccceEE
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-------A--VPAFLEI 92 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~---~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~-------~--~~~~i~~ 92 (394)
..++++|..++|||||++.|+|..... ...++.|+........+...+ . +..|.... . ....+.+
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~--~-~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP--N-CGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT--T-TCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc--c-cccccccccccccCcccccccEEEE
Confidence 589999999999999999999864321 222444554433332221100 0 00011100 0 0135899
Q ss_pred EecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 93 ~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+|+||.... ...+...+..+|+++.|+++.
T Consensus 88 iDtPGh~~f-------~~~~~~~~~~~D~~ilVvda~ 117 (410)
T 1kk1_A 88 IDAPGHEAL-------MTTMLAGASLMDGAILVIAAN 117 (410)
T ss_dssp EECSSHHHH-------HHHHHHCGGGCSEEEEEEETT
T ss_pred EECCChHHH-------HHHHHhhhhhCCEEEEEEECC
Confidence 999996431 112233445567777766663
No 337
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.12 E-value=0.00012 Score=65.21 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCceeE
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~ 65 (394)
.+..|..++|+||+||||||+.+.|...... . ...+.+|+.|..|.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 4567889999999999999999999865321 1 12345566665443
No 338
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.00026 Score=62.78 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
........+.++..++|+|+|||||||+.+.|++.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45666677888999999999999999999999965
No 339
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.10 E-value=0.00028 Score=62.90 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
|.++.|..++|+|+||+|||||++.|++
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999999997
No 340
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.07 E-value=6.7e-05 Score=75.20 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++++|.+|+|||||++.|++.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
No 341
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.07 E-value=0.00029 Score=63.34 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+++|+|+|||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00028 Score=67.88 Aligned_cols=24 Identities=46% Similarity=0.497 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++||+||||||||||+++|.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999987
No 343
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.01 E-value=0.00022 Score=63.20 Aligned_cols=45 Identities=27% Similarity=0.243 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCceeEEecCCcch
Q 016139 27 IGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDERF 73 (394)
Q Consensus 27 vgliG~nGaGKSTLln~Ltg~~~~-~-~~~p~~T~~p~~G~i~v~g~~~ 73 (394)
+.|+||+|||||||++.|....+. . -..+.||+.|-.|.+ +|.++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY 50 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDY 50 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTB
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCcee
Confidence 679999999999999999865442 2 467889999988864 45443
No 344
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.00 E-value=0.00012 Score=72.50 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+++++|.+|+|||||++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 358999999999999999999974
No 345
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.96 E-value=0.00035 Score=68.37 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
..+..| .++|+|||||||||||++|+.
T Consensus 19 i~~~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 19 IEFQSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 445667 788999999999999999983
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00043 Score=61.41 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++||+|+|||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999974
No 347
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.94 E-value=0.0004 Score=72.29 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCccccCCceeEEecCCcchhhhhhhccCCCccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAEN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~---------------~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~ 89 (394)
-.++|+|..|+|||||++.|+.....+.. ..+.|+......+.+.+ .......
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~------------~dg~~~~ 74 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA------------KDGNTYK 74 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC------------TTSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc------------CCCCeEE
Confidence 37999999999999999999753111110 01223332222332211 0011135
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
+.++||||..+.. ....+.++.+|+++.|+|+.
T Consensus 75 inliDTPGh~dF~-------~ev~r~l~~aD~aILVVDa~ 107 (600)
T 2ywe_A 75 LHLIDTPGHVDFS-------YEVSRALAACEGALLLIDAS 107 (600)
T ss_dssp EEEECCCCSGGGH-------HHHHHHHHTCSEEEEEEETT
T ss_pred EEEEECCCcHhHH-------HHHHHHHHhCCEEEEEEECC
Confidence 7899999986532 23345567788888887775
No 348
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.92 E-value=0.00015 Score=73.24 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg 46 (394)
..++++|..++|||||++.|+.
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00027 Score=64.96 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++.| +.|+||||+|||||+++|++.
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 4455 899999999999999999987
No 350
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.92 E-value=0.00029 Score=76.28 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CC---------------CCccccCCceeEEecCCcchhhhhhhccCCCcccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-EN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPA 88 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~-~~---------------~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~ 88 (394)
..++|+|.+|+|||||++.|++....+ +. .+..|+......+.+.... .....+-........
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD-EDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH-HHHHHCSSCCCSSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc-cccccccccccCCCc
Confidence 479999999999999999998642211 11 1122333333333221000 000000000001123
Q ss_pred ceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 89 ~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
.+.++||||..+.. ......++.+|+++.|+|+.
T Consensus 99 ~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~ 132 (842)
T 1n0u_A 99 LINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTI 132 (842)
T ss_dssp EEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETT
T ss_pred eEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCC
Confidence 58999999986532 23446678888888888774
No 351
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.90 E-value=0.00048 Score=64.37 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=29.4
Q ss_pred CCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 14 ~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
-...++.++.|..++|+|+||+|||||++.+++.
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445567899999999999999999999999874
No 352
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.90 E-value=0.00048 Score=67.70 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=26.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++.|..++|+||||+|||||+++|++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46788999999999999999999999985
No 353
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.88 E-value=0.00072 Score=71.82 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg 46 (394)
-..++|+|..|+|||||++.|+.
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999964
No 354
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.86 E-value=0.00028 Score=67.44 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=32.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~ 71 (394)
...++.+++|+|+|||||||++..|++. ..+..|.|.+.+.
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~-----------l~~~g~kV~lv~~ 140 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKM-----------FVDEGKSVVLAAA 140 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEE
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHH-----------HHhcCCEEEEEcc
Confidence 3567899999999999999999999988 4455666665443
No 355
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.85 E-value=0.00045 Score=68.45 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
..+++++|..++|||||++.|+|..
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999999864
No 356
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00052 Score=60.66 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+++|+|+|||||||+.+.|++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 47999999999999999999974
No 357
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.00036 Score=65.17 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++.| ++|+||||+|||||+++|++.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHH
Confidence 4445 899999999999999999987
No 358
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.81 E-value=0.00026 Score=73.75 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
.+++|+|.+|+|||||++.|++..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 589999999999999999999763
No 359
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.80 E-value=0.00035 Score=66.36 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|.+++|+|+|||||||+++.|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999987
No 360
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.78 E-value=0.00059 Score=68.03 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+..+..++|+||||||||||+++|++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 5568899999999999999999999873
No 361
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.78 E-value=0.00046 Score=71.83 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCccccCCceeEEecCCcchhhhhhhccCCCccccc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAEN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~~~---------------~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~ 89 (394)
-.++|+|..|+|||||++.|+.....+.. ..+.|+......+.+.+ ...-...
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~------------~~g~~~~ 72 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKA------------SDGETYQ 72 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEEC------------TTSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEec------------CCCCeEE
Confidence 37899999999999999999864211110 01122222222222211 0011235
Q ss_pred eEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccC
Q 016139 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (394)
Q Consensus 90 i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~ 130 (394)
+.++||||..+.. ....+.++.+|+++.|+|+.+
T Consensus 73 l~liDTPGh~dF~-------~ev~~~l~~aD~aILVVDa~~ 106 (599)
T 3cb4_D 73 LNFIDTPGHVDFS-------YEVSRSLAACEGALLVVDAGQ 106 (599)
T ss_dssp EEEEECCCCGGGH-------HHHHHHHHHCSEEEEEEETTT
T ss_pred EEEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCC
Confidence 8899999985432 233456778888888888753
No 362
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.00069 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+|+.++|+|++||||||+.++|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999976
No 363
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.75 E-value=0.00076 Score=57.25 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Lt 45 (394)
...+|+|||||||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 364
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00066 Score=66.28 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=26.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 16 ~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.....+..| +++|+||||+||||++++|.+.
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 344566777 9999999999999999999863
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.00044 Score=61.84 Aligned_cols=29 Identities=38% Similarity=0.337 Sum_probs=26.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.+|..+.|+|++||||||+.+.|.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34677899999999999999999999986
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.67 E-value=0.00081 Score=58.34 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
+|..++|+|+|||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999984
No 367
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.59 E-value=0.00064 Score=65.31 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=35.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
....+.++.+++|+|+||+||||++..|++. ..+..|.|.+.+.+
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~-----------l~~~g~kVllid~D 142 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANY-----------YAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEeCC
Confidence 3344678899999999999999999999987 44566666665443
No 368
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.00096 Score=58.95 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...++|+|+|||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 369
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.57 E-value=0.0013 Score=64.99 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.2
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHH
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Lt 45 (394)
|-++.|.++.|+|+||+|||||++.|+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 568889999999999999999999554
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.0014 Score=57.02 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|..+.|+|+|||||||+.+.|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999876
No 371
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.51 E-value=0.0016 Score=56.85 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.2
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+..++|+|++||||||+.+.|...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999854
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0012 Score=61.14 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=25.0
Q ss_pred ccCC---CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSS---HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~---g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.. |..++|+|++||||||+.++|++.
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456 899999999999999999999975
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.41 E-value=0.0014 Score=63.10 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++|+||||+|||||+++|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999987
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.39 E-value=0.0016 Score=61.53 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.++||+|++|||||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999987
No 375
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.38 E-value=0.0018 Score=66.67 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g 70 (394)
.|..++|+||||+|||||.++|++. ..+..|.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~-----------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS-----------LGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH-----------HTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEEecc
Confidence 5789999999999999999999988 456677777665
No 376
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.002 Score=54.68 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTL 44 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~L 44 (394)
+.++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.32 E-value=0.0025 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+|..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999975
No 378
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.32 E-value=0.0023 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++..+.|.|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.30 E-value=0.0022 Score=58.37 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.+|..+.|.|+|||||||+.+.|...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999976
No 380
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.29 E-value=0.00091 Score=63.41 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCceeEEecCCcc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
.|.+++++|+||+||||+...|++. ..+..|.+.+.|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~-----------~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-----------YKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHcCCeEEEecCC
Confidence 6889999999999999999999998 44556777665544
No 381
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.29 E-value=0.0022 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.099 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++|.|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999854
No 382
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.28 E-value=0.018 Score=58.55 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+++.| +.|+||||+|||||+++|++.
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34555 899999999999999999987
No 383
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.0012 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCCCCccccCCceeEEecCCcc
Q 016139 26 KIGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDER 72 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg-~~~~~~~~p~~T~~p~~G~i~v~g~~ 72 (394)
.+.|.||||+||||++++|++ . ..|+.|.+.++|..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l-----------~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI-----------FGPGVYRLKIDVRQ 74 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH-----------SCTTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-----------cCCCCCeEEeccee
Confidence 389999999999999999999 4 34667777766643
No 384
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.25 E-value=0.0025 Score=55.13 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+.|.|++||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
No 385
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.25 E-value=0.0026 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg 46 (394)
..+.|.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0024 Score=56.99 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Lt 45 (394)
...+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999985
No 387
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0025 Score=57.61 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.8
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Lt 45 (394)
.+-++.|..++|+|+||+|||||...++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999999966554
No 388
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.22 E-value=0.0024 Score=61.59 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Lt 45 (394)
...+|+|||||||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 477899999999999999985
No 389
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.19 E-value=0.003 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+.|.|++||||||+-+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999965
No 390
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0027 Score=57.68 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.+++|+|+|||||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 391
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.19 E-value=0.0014 Score=72.50 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|+++|.+|+|||||++.|++.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Confidence 468999999999999999999974
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.18 E-value=0.0029 Score=55.22 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
-..++|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 458999999999999999999975
No 393
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.14 E-value=0.0029 Score=55.35 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.|+|+|++||||||+.+.|...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHh
Confidence 36899999999999999999874
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.12 E-value=0.0033 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..++|.|++||||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999863
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.07 E-value=0.0037 Score=55.23 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+|..|+|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 396
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0037 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|..|.|.|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999999864
No 397
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=96.03 E-value=0.0078 Score=44.21 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=45.9
Q ss_pred eeEEecCCCChhhhhccchhhhhhccEEEEEeechhhhhcCChhHHhhcCcccccCCcceecCCCEEEEEEecC
Q 016139 316 KCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVS 389 (394)
Q Consensus 316 raw~i~~gsta~~~A~~IHsD~~~gFi~A~v~~~~d~~~~~~~~~~k~~g~~~~~Gkdy~v~dgDii~~~f~~~ 389 (394)
+...++.|+|+.|+|..||+++.+..+-|+| . | +....++.+++||.|+|.-...
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-N----------------g--~lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKV-N----------------H--KLVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-T----------------T--EECCTTCBCCSSSBEEEEECCC
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEE-C----------------C--EEeCCCcCcCCCCEEEEEECCC
Confidence 3578899999999999999999998877763 2 5 6678899999999999986553
No 398
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.03 E-value=0.0037 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++..++|.|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999854
No 399
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.01 E-value=0.004 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+|..|+|.|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 400
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.93 E-value=0.0049 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.....|+|.|++||||||+.+.|...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999854
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.0043 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|+|.|+|||||||+-+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.0037 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...++|+|++|||||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.90 E-value=0.0043 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999643
No 404
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.88 E-value=0.0028 Score=55.32 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.++..|+|.|++||||||+.+.|...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999864
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.85 E-value=0.0054 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++.|+|+|++||||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999853
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.85 E-value=0.0051 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..|.|+|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999854
No 407
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.85 E-value=0.0046 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++++|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 408
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.82 E-value=0.0031 Score=58.08 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++..+.|+|+|||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999875
No 409
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.79 E-value=0.0051 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++..+.|+|++||||||+.+.|...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999843
No 410
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.78 E-value=0.0056 Score=53.54 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|+|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999864
No 411
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.75 E-value=0.0056 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.|+|++||||||+.+.|...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 412
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.73 E-value=0.005 Score=64.12 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~~ 48 (394)
+..|..+.|+||||+|||||+++|++..
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4567899999999999999999999983
No 413
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.69 E-value=0.0063 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+.|+|++||||||+-+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 414
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.69 E-value=0.0048 Score=53.39 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+|+|+|++||||||+-+.|...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 415
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.68 E-value=0.019 Score=59.08 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC----------------------CCCCccccCCceeEEecCCcchhhhhhhccC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA----------------------ENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~~~~~----------------------~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~ 82 (394)
-.+||||..++|||||.-+|+-..-.+ .--.+-|+....-.+.+.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------------ 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------------ 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------------
Confidence 479999999999999999985221000 0011222333333333333
Q ss_pred CCccccceEEEecccccccccCCCCCchhhhhHHHhhhhHHhhhhccC
Q 016139 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (394)
Q Consensus 83 ~~~~~~~i~~~D~~gl~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~~ 130 (394)
..+.++||||..+.. ....+.++-+|..+.|+||..
T Consensus 100 -----~~iNlIDTPGHvDF~-------~Ev~raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 100 -----RVVNLLDTPGHQDFS-------EDTYRVLTAVDSALVVIDAAK 135 (548)
T ss_dssp -----EEEEEECCCCGGGCS-------HHHHHHHHSCSEEEEEEETTT
T ss_pred -----EEEEEEeCCCcHHHH-------HHHHHHHHhcCceEEEeecCC
Confidence 348999999987643 344577888888888877743
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.68 E-value=0.0057 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|.|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0065 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|+|.|++||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.66 E-value=0.003 Score=55.89 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 419
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.65 E-value=0.0053 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.|+|+|||||||+-+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 420
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.64 E-value=0.0063 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.|+|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.62 E-value=0.0068 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
....+++|.||+||||||+.+.|...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999854
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.61 E-value=0.0069 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999863
No 423
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.61 E-value=0.0067 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.++|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.54 E-value=0.0051 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++..|.|.|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999743
No 425
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.54 E-value=0.013 Score=56.26 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=45.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCceeEEecCCcchhhhhhhccCCCccccceEEEecccccccccC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~~~~~-~~~p~~T~~p~~G~i~v~g~~~~~l~~~~~~~~~~~~~i~~~D~~gl~~~~~~ 104 (394)
++.|+|..|||||||++.+.+...+. ......|+..+...+ . . ...+++||++|..+....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~-~---------------~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--S-T---------------LIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--C-S---------------SSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--c-c---------------EEEEEEEECCCchhccch
Confidence 47899999999999999887653211 111122333332222 1 0 135899999997654210
Q ss_pred CCCCchhhhhHHHhhhhHHhhhhc
Q 016139 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (394)
Q Consensus 105 ~~~l~~~~l~~l~~~d~il~vv~a 128 (394)
.+ ......+.+++++.|+|+
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDS 82 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCC
T ss_pred --hh--hhhhhccCCCEEEEEEEC
Confidence 00 012345677777776665
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.53 E-value=0.007 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
No 427
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.008 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+..++|.|++||||||+.+.|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.50 E-value=0.0068 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|.|+|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999854
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.49 E-value=0.0078 Score=55.60 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
++..|.|+|+|||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.44 E-value=0.0071 Score=53.91 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+++|+|.+|||||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999865
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.43 E-value=0.0079 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++.|.|+|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999854
No 432
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.41 E-value=0.016 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=22.1
Q ss_pred CcEEEEEcCC---------CCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLP---------NVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~n---------GaGKSTLln~Ltg~ 47 (394)
..+|+|+|.+ |||||||++.+++.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 3689999999 99999999999984
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.41 E-value=0.0083 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+++.|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 434
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.36 E-value=0.0078 Score=56.62 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.++..+.|.|||||||||+.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.33 E-value=0.0093 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|++.|+|||||||+|.-+.|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999854
No 436
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.32 E-value=0.0091 Score=58.65 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.6
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 17 ~~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.+|++++|+|++|+|||||++.|++.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4556788999999999999999999999875
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.29 E-value=0.0098 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+.|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 438
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.27 E-value=0.0088 Score=55.10 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.|+||||||||||-+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 439
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.26 E-value=0.01 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+++|.|++||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999874
No 440
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.21 E-value=0.01 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++|+|++|||||||++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 441
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.08 E-value=0.0099 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.-+.|+||||+|||||.++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35889999999999999999976
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.07 E-value=0.011 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.0
Q ss_pred cCCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~--vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|.. +.|+|+||+||||+.++|++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 445655 999999999999999999875
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.06 E-value=0.01 Score=53.99 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=21.0
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.+.+|..|.|.|++||||||+.+.|...
T Consensus 19 ~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 19 PGSMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp ----CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred CccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345667999999999999999999999865
No 444
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.06 E-value=0.013 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...++|.|++||||||+-+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 445
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.03 E-value=0.015 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+..+|.|+|||||||||.-+.|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445568899999999999999999854
No 446
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.02 E-value=0.011 Score=57.59 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|-++.|..+.|+||||+|||||+..++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46888999999999999999999999876
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.01 E-value=0.015 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+..|.|+|++||||||+.+.|...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
No 448
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.84 E-value=0.0079 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.+++++|++|+||||+...|++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999987
No 449
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.83 E-value=0.0047 Score=58.55 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+++++|+||+||||+++.|++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999977
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.01 Score=56.79 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~--vgliG~nGaGKSTLln~Ltg~ 47 (394)
..|.. +.|.||||+||||+++++++.
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34444 899999999999999999986
No 451
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.73 E-value=0.018 Score=54.33 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+..+.|.||||+|||||.++|.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 456778999999999999999999976
No 452
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.62 E-value=0.017 Score=56.24 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 016139 25 LKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Lt 45 (394)
....|+|+|||||||++-+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999986
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.61 E-value=0.02 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.+||+|+|||||||+-+.|...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999753
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.59 E-value=0.02 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
...+|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 455
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.50 E-value=0.02 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|-++.|..+.|.|+||+|||||...++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999998777643
No 456
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.48 E-value=0.022 Score=56.85 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.+++++|+|||||||++..|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999965
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.48 E-value=0.022 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg 46 (394)
..+.|.|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999985
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.48 E-value=0.021 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+||.|++||||||+-+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999854
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.47 E-value=0.022 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg 46 (394)
..+|||.|++||||||+-+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 460
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.40 E-value=0.0099 Score=60.63 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..| ..+|+|+||||||||+.+|...
T Consensus 57 ~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp ECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34456 8999999999999999999654
No 461
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.37 E-value=0.026 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.|.||||+|||||.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 462
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.35 E-value=0.028 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+.|.|++|+||||+.+.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999865
No 463
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.27 E-value=0.012 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.|+|++||||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999876
No 464
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.25 E-value=0.016 Score=60.68 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCceeEEecCCcchhhhhhh-----ccCCCccccceEEEeccc
Q 016139 26 KIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Lt---g~~~~~~~~p~~T~~p~~G~i~v~g~~~~~l~~~-----~~~~~~~~~~i~~~D~~g 97 (394)
.|||+|..++|||||.-.|. |....... ...|.-..+-....+-..+ ..+-..-...+.++||||
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~-------v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGS-------VDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSS-------CCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccc-------cccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCC
Confidence 47999999999999999884 43211100 0111101110000000000 000011123578999999
Q ss_pred ccccccCCCCCchhhhhHHHhhhhHHhhhhcc
Q 016139 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (394)
Q Consensus 98 l~~~~~~~~~l~~~~l~~l~~~d~il~vv~a~ 129 (394)
..+.. ....+.++-+|..+.|+||.
T Consensus 77 H~DF~-------~Ev~raL~~~DgavlVVDa~ 101 (638)
T 3j25_A 77 HMDFL-------AEVYRSLSVLDGAILLISAK 101 (638)
T ss_dssp SSSTH-------HHHHHHHTTCSEEECCEESS
T ss_pred cHHHH-------HHHHHHHHHhCEEEEEEeCC
Confidence 87533 34557778888888888875
No 465
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.06 E-value=0.025 Score=60.93 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=25.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+..+.|+||||+|||||.++|++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3677889999999999999999999987
No 466
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.02 E-value=0.03 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.|.||+|+|||||.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999875
No 467
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.00 E-value=0.031 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.|.||||+||||+.+++++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568899999999999999999976
No 468
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.98 E-value=0.033 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+|..|.|-|++||||||+.+.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999754
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.96 E-value=0.026 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+..+.|.||+|+|||||++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999975
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.93 E-value=0.032 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+.|.||||+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999976
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.81 E-value=0.031 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..++|.|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 472
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.80 E-value=0.029 Score=56.38 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+.+|.+++|+|++|+|||||++.|...
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhh
Confidence 346899999999999999999999865
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.77 E-value=0.039 Score=50.39 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=22.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|..|.|.|++||||||+.+.|...
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999764
No 474
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.048 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..-+-|.||||+|||+|.+++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 344779999999999999999976
No 475
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.67 E-value=0.039 Score=55.19 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=26.9
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 18 ~~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++.+.+|..+.|.|+||+|||||...+++.
T Consensus 197 ~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 197 TSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999999875
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.64 E-value=0.04 Score=49.84 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..|+|-|+.||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999865
No 477
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.59 E-value=0.043 Score=52.80 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=26.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|-++.|..+.|.|+||+|||||...++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999988864
No 478
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.57 E-value=0.042 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+..+.|.||||+|||||.++++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999875
No 479
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.57 E-value=0.032 Score=56.34 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 016139 26 KIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 26 ~vgliG~nGaGKSTLln~Ltg~ 47 (394)
-+.|+||||+|||||.+++++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999986
No 480
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.51 E-value=0.045 Score=49.37 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 20 RFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 20 ~i~~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
.+..|..+.++|++||||||++..+..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345688999999999999998887753
No 481
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.49 E-value=0.041 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.|.||||+||||+.++|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999999986
No 482
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.44 E-value=0.052 Score=48.84 Aligned_cols=26 Identities=38% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.+|..|.+-|++||||||+.+.|...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999875
No 483
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.40 E-value=0.04 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...+.|.||+|+||||+.+.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457789999999999999999865
No 484
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.36 E-value=0.041 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Lt 45 (394)
...+|+|+|++||||||+++.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999999
No 485
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.35 E-value=0.052 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|..|.|-|++||||||+.+.|...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999864
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.29 E-value=0.046 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 22 ~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.....+.|+|+|||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999854
No 487
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.25 E-value=0.037 Score=56.28 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCCCcccccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 016139 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (394)
Q Consensus 13 ~~~~~~~~i~~g~~vgliG~nGaGKSTLln~Ltg 46 (394)
...+....+..+..+.|.|.+||||||++|+|..
T Consensus 156 ~G~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 156 AGEPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp TSCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3456667777888999999999999999999875
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.24 E-value=0.028 Score=51.64 Aligned_cols=27 Identities=41% Similarity=0.393 Sum_probs=23.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..++..|.|.|++||||||+.+.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999865
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.18 E-value=0.03 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+++++|++|+||||+.+.|++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 490
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.06 E-value=0.07 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Lt 45 (394)
...++.++|++||||||+++.|+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 34788999999999999999998
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.03 E-value=0.028 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+|||.|++||||||+-+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 492
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.02 E-value=0.055 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.|.||+|+|||||++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 493
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.98 E-value=0.054 Score=51.60 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.8
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 19 ~~i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
|-++.|..+.|.|+||+|||||...++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 56788999999999999999999888754
No 494
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.97 E-value=0.043 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 24 g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+..+.|.||||+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999975
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.94 E-value=0.064 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
.|..|.|.|++||||||+.+.|...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.89 E-value=0.066 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
...-+.|.||||+||||+.+++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999875
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.87 E-value=0.051 Score=48.67 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 21 i~~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
+++.-.+.|.||||+||||+..+|+..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 444456899999999999999999875
No 498
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.78 E-value=0.06 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
++.++.++|+|||||||+...|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999843
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.74 E-value=0.068 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 016139 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 25 ~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..+.|+||+|||||||-+.|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999865
No 500
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.07 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 016139 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (394)
Q Consensus 23 ~g~~vgliG~nGaGKSTLln~Ltg~ 47 (394)
..-=+.|.||||+|||+|.+++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445889999999999999999976
Done!