BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016140
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/362 (58%), Positives = 271/362 (74%), Gaps = 5/362 (1%)
Query: 32 FVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFS 91
FV T GT F LNG NGFN+YW+M +A PS R KV++ F+QA+ ++V RTWAFS
Sbjct: 6 FVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFS 65
Query: 92 DGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAA 151
GG LQ +PGVYNE +FQGLDFVISEA+KYGI LI+SL NN+ FGG+ QYV WA
Sbjct: 66 HGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQR 125
Query: 152 GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY 211
G + SDD+F+TN +VKG+YKN+VK VLTR+NTIT++AYKDDPTI++WELINE RC +D
Sbjct: 126 GQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDL 185
Query: 212 SGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNP-GYQVGTDFISNNMI 270
SGKT NWV EMA Y+KSID+ HLLEIGLEGFYG+ D +Q+NP Y GT+FISNN +
Sbjct: 186 SGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGN---DMRQYNPNSYIFGTNFISNNQV 242
Query: 271 KEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAG 330
+ IDFTTIH YP+QWLPG AQ ++ +W+ H DSK +LKKPL+ +EFGKS+K G
Sbjct: 243 QGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSK-MLKKPLLIAEFGKSTKTPG 301
Query: 331 FSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYEIVLSQNPSTRSV 390
+++ RD++ IY I+N A++GG GGG+ WQ++ +GM + DGY++VL ++PST V
Sbjct: 302 YTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRV 361
Query: 391 IL 392
IL
Sbjct: 362 IL 363
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 188/388 (48%), Gaps = 61/388 (15%)
Query: 36 RGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGY 95
RG+ +LNG F F G N+Y+M +++ + V A G+ V R W F DG
Sbjct: 17 RGSH-MLNGKEFRFIGSNNYYMHYKSNR-----MIDSVLESARDMGIKVLRIWGFLDGES 70
Query: 96 GA------LQQSPGVYNEPV--------FQGLDFVISEARKYGIRLILSLSNNYHDFGGR 141
+ PGV+ P F+ LD+ I++A++ GI+LI+ L NN+ DFGG
Sbjct: 71 YCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDFGGM 130
Query: 142 PQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL 201
QYV W D+FY + +K YK +V ++ +N T + Y+++PTIMAWEL
Sbjct: 131 NQYVRWFGGT-----HHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWEL 185
Query: 202 INEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNP----- 256
NE RC+ D SG TL WV+EM+SY+KS+D HL+ +G EGF+ + + F P
Sbjct: 186 ANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFFSNY----EGFKPYGGEA 241
Query: 257 -----GYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKT 311
G+ G D+ I+ +DF T H YP W +YA Q+ KW+ H +K
Sbjct: 242 EWAYNGWS-GVDWKKLLSIETVDFGTFHLYPSHWGVSPENYA--QWGAKWIEDHIKIAKE 298
Query: 312 ILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMA---- 367
I KP+V E+G K A + N + +Y+L + G M W L
Sbjct: 299 I-GKPVVLEEYG-IPKSAPVNRTAIYRLWNDL---VYDLGGD-----GAMFWMLAGIGEG 348
Query: 368 -----EGMQPYFDGYEIVLSQNPSTRSV 390
G P +DG+ IV +P +
Sbjct: 349 SDRDERGYYPDYDGFRIVNDDSPEAELI 376
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 151/327 (46%), Gaps = 62/327 (18%)
Query: 31 GFVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAF 90
GFV T G F L+G F F G N+Y+ QP + A AAGL+V RTW F
Sbjct: 5 GFVTTEGDHFKLDGKDFYFAGSNAYYFP-FNDQPD----IEKGMTAARAAGLTVFRTWGF 59
Query: 91 SDGG----------YGALQQSPGVYNEPVFQ-------------GLDFVISEARKYGIRL 127
+D YG + G VFQ D V+ A K GI+L
Sbjct: 60 NDKNRTYIPTGLPQYG--NEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTGIKL 117
Query: 128 ILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITR 187
I++L+NN+ D+GG Y D+FYT +K +K +VK ++TR
Sbjct: 118 IVALTNNWADYGGMDVYT-----VNLGGKYHDDFYTVPKIKEAFKRYVKAMVTR------ 166
Query: 188 IAYKDDPTIMAWELINEARCQAD-----------YSGKTLNNWVQEMASYVKSIDNKHLL 236
Y+D I+AWEL NEARC AD + +T+ W++EM++YVKS+D HL+
Sbjct: 167 --YRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLV 224
Query: 237 EIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQ 296
G EG + ++ F G G DF ++ +DF T+H YPD W ++
Sbjct: 225 TWGGEGGFNRGEDEEDGFYNGAD-GGDFDRELGLRNVDFGTMHLYPDWWSK------SIE 277
Query: 297 FVQKWLASHWTDSKTILKKPLVFSEFG 323
+ +W+ H S KP+V E+G
Sbjct: 278 WSNQWIHDH-AASGRAANKPVVLEEYG 303
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 164/367 (44%), Gaps = 60/367 (16%)
Query: 30 AGFVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWA 89
+ FV GTQF ++G F G N YW S + V F +++GL V R W
Sbjct: 2 SSFVTISGTQFNIDGKVGYFAGTNCYW----CSFLTNHADVDSTFSHISSSGLKVVRVWG 57
Query: 90 FSDGGYGALQQSPG-VYNEPV-------------FQGLDFVISEARKYGIRLILSLSNNY 135
F+D Q SPG ++ + + Q LD+V+ A ++ ++LI+ NN+
Sbjct: 58 FNDVN---TQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNW 114
Query: 136 HDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPT 195
D+GG YVN A G + + +YTN + Y+ +V+ V++R Y +
Sbjct: 115 SDYGGINAYVN---AFGGNATT---WYTNTAAQTQYRKYVQAVVSR--------YANSTA 160
Query: 196 IMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFN 255
I AWEL NE RC S + W ++ YVKS+D+ HL+ +G EG G S D +
Sbjct: 161 IFAWELGNEPRCNG-CSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGL-GLSTGDGA-YP 217
Query: 256 PGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKK 315
Y GTDF N IK +DF T H YPD W G N + W+ +H + K
Sbjct: 218 YTYGEGTDFAKNVQIKSLDFGTFHLYPDSW--GTN----YTWGNGWIQTH-AAACLAAGK 270
Query: 316 PLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQ---LMAEGMQP 372
P VF E+G ++ N +L G +GG M WQ A G Q
Sbjct: 271 PCVFEEYGAQ----------QNPCTNEAPWQTTSLTTRG--MGGDMFWQWGDTFANGAQS 318
Query: 373 YFDGYEI 379
D Y +
Sbjct: 319 NSDPYTV 325
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 159/359 (44%), Gaps = 41/359 (11%)
Query: 21 ASAQTLPAQAGFVQTRGTQFVLNGSPFLFNGFNSYWM--MNVASQPSQRYKVSDVFRQAA 78
A+ T PA FV+ G F L G P++ G N ++ + ++ R +++
Sbjct: 13 ANVATSPAHEHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLK 72
Query: 79 AAGLSVCRTWAFSDGGYGALQQSPGV------YNEPVFQGLDFVISEARKYGIRLILSLS 132
A G++ R A S+ P V Y+E + QGLD+++ E K + ++L +
Sbjct: 73 AIGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFN 132
Query: 133 NNYHDFGGRPQYVNWARAA-----------GASVNSDDEFYTNAIVKGYYKNHVKKVLTR 181
N + GG QY+ W A + FY + + Y+ ++K++TR
Sbjct: 133 NFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITR 192
Query: 182 INTITRIAYKDDPTIMAWELINEAR---CQADYSGKTLN-NWVQEMASYVKSIDNKHLLE 237
+N+I AY DD TIM+W+L NE R Q K + +WV A+Y+K++D HL+
Sbjct: 193 VNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVS 252
Query: 238 IGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQW------LPGKND 291
G EG G S+ D + FI + +ID+ T H + W P +
Sbjct: 253 SGSEGEMG-SVNDMQV----------FIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETW 301
Query: 292 YAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNL 350
+ + Q ++ +H D L KPLV EFG ++++ + + + ++ L
Sbjct: 302 PSAWEKAQNYMRAH-IDVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFEL 359
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 190 YKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIP 249
YKD P + +E++NE + + + N ++E ++SID KH + IG + G S
Sbjct: 122 YKDYPETLFFEILNEP--HGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 DKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHW--- 306
+K P ++ + ++ + +FT A +W+ G +KWL W
Sbjct: 180 EKLSV-PKWEKNS-IVTIHYYNPFEFTHQGA---EWVEGS---------EKWLGRKWGSP 225
Query: 307 TDSKTILKKPLVFSEFGKSSK 327
D K ++++ E+ K +K
Sbjct: 226 DDQKHLIEEFNFIEEWSKKNK 246
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 190 YKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIP 249
YKD P + +E++NE + + + N ++E ++SID KH + IG + G S
Sbjct: 122 YKDYPETLFFEILNEP--HGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 DKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHW--- 306
+K P ++ + ++ + +FT A +W+ G +KWL W
Sbjct: 180 EKLSV-PKWEKNS-IVTIHYYNPFEFTHQGA---EWVEGS---------EKWLGRKWGSP 225
Query: 307 TDSKTILKKPLVFSEFGKSSK 327
D K ++++ E+ K +K
Sbjct: 226 DDQKHLIEEFNFIEEWSKKNK 246
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 54 SYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGL 113
S W ++V P + K F + A GLS+C +++G Y L++ + P+
Sbjct: 56 SPWGLDVERDPIEYAK----FMERYAVGLSICTEEKYANGSYETLRKIASSVSIPILMA- 110
Query: 114 DFVISEAR 121
DF++ E++
Sbjct: 111 DFIVKESQ 118
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 54 SYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGL 113
S W ++V P + K F + A GLS+C +++G Y L++ + P+
Sbjct: 56 SPWGLDVERDPIEYAK----FMERYAVGLSICTEEKYANGSYETLRKIASSVSIPILMA- 110
Query: 114 DFVISEAR 121
DF++ E++
Sbjct: 111 DFIVKESQ 118
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/307 (18%), Positives = 118/307 (38%), Gaps = 78/307 (25%)
Query: 25 TLPAQAGFVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSV 84
TLP V +QF++NG PF F+G N +++ +D+ + L V
Sbjct: 301 TLPVGIRTVAVTKSQFLINGKPFYFHGVN-------------KHEDADIRGKGFDWPLLV 347
Query: 85 CRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144
G A + S Y E V Q D +YGI +I
Sbjct: 348 KDFNLLRWLGANAFRTSHYPYAEEVMQMCD-------RYGIVVI---------------- 384
Query: 145 VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINE 204
+ G ++ +F+ N V ++ V + + R + K+ P ++ W + NE
Sbjct: 385 -DECPGVGLAL---PQFFNN--VSLHHHMQVMEEVVRRD-------KNHPAVVMWSVANE 431
Query: 205 ARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDF 264
+ +G +++ + ++ KS+D + + +++
Sbjct: 432 PASHLESAGY----YLKMVIAHTKSLDPSRPVT--------------------FVSNSNY 467
Query: 265 ISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGK 324
++ +D +++Y + +DY ++ +Q LA+ + + +KP++ SE+G
Sbjct: 468 AADKGAPYVDVICLNSYYSWY----HDYGHLELIQLQLATQFENWYKKYQKPIIQSEYGA 523
Query: 325 SSKEAGF 331
+ AGF
Sbjct: 524 ETI-AGF 529
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 190 YKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIP 249
YKD P + +E++N + + + N ++E ++SID KH + IG + G S
Sbjct: 122 YKDYPETLFFEILNAP--HGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 DKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHW--- 306
+K P ++ + ++ + +FT A +W+ G +KWL W
Sbjct: 180 EKLSV-PKWEKNS-IVTIHYYNPFEFTHQGA---EWVEGS---------EKWLGRKWGSP 225
Query: 307 TDSKTILKKPLVFSEFGKSSK 327
D K ++++ E+ K +K
Sbjct: 226 DDQKHLIEEFNFIEEWSKKNK 246
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 190 YKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIP 249
YKD P + +E++N + + + N ++E ++SID KH + IG + G S
Sbjct: 122 YKDYPETLFFEILNAP--HGNLTPEKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 DKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHW--- 306
+K P ++ + ++ + +FT A +W+ G +KWL W
Sbjct: 180 EKLSV-PKWEKNS-IVTIHYYNPFEFTHQGA---EWVEGS---------EKWLGRKWGSP 225
Query: 307 TDSKTILKKPLVFSEFGKSSK 327
D K ++++ E+ K +K
Sbjct: 226 DDQKHLIEEFNFIEEWSKKNK 246
>pdb|2ZMU|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 9.1
pdb|2ZMW|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
Length = 223
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 46 PFLFNGFNSYWMMNVASQPSQRY--KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG 103
PF F+ + +V +P +Y ++ D F+QA GLS R+ F DGG ++
Sbjct: 54 PFAFD-----LVSHVXHRPFTKYPEEIPDYFKQAFPEGLSWERSLEFEDGGSASVSAHIS 108
Query: 104 V-----YNEPVFQGLDF 115
+ Y++ F G++F
Sbjct: 109 LRGNTFYHKSKFTGVNF 125
>pdb|3MGF|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
Length = 218
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 46 PFLFNGFNSYWMMNVASQPSQRY--KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG 103
PF F+ + +V +P +Y ++ D F+QA GLS R+ F DGG ++
Sbjct: 57 PFAFD-----LVSHVXHRPFTKYPEEIPDYFKQAFPEGLSWERSLEFEDGGSASVSAHIS 111
Query: 104 V-----YNEPVFQGLDF 115
+ Y++ F G++F
Sbjct: 112 LRGNTFYHKSKFTGVNF 128
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 35/184 (19%)
Query: 33 VQTRGTQFVLNGSPFLFNGFNSYWM---MNVASQPSQRYK--VSDVFRQAAAAGLSVCRT 87
+ + FVLNG +G N WM + QR K + F++ AG + R
Sbjct: 2 LHIQNGHFVLNGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRL 61
Query: 88 WAFSDGGYGALQQSPGVYNEPVFQG-----LDFVISEARKYGIRLILSLSNNYHDFGGRP 142
W G G P QG + ++ A+KY I + L N
Sbjct: 62 WIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCLWN--------- 112
Query: 143 QYVNWARAAGASVNSDDEFYTNAIVKGYYK--NHVKKVLTRINTITRIAYKDDPTIMAWE 200
A+VN D + ++K +K +++ K L I + + K + W+
Sbjct: 113 ----------AAVNQDSHNRLDGLIKDQHKLQSYIDKALKPI--VNHV--KGHVALGGWD 158
Query: 201 LINE 204
L+NE
Sbjct: 159 LMNE 162
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 80 AGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYH--- 136
AG+ V FS + +Q+ Y+ F LD +I K I L L+ S H
Sbjct: 35 AGIDVATVNVFS---WAKIQRDEVSYD---FTWLDDIIERLTKENIYLCLATSTGAHPAW 88
Query: 137 -----------DFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTI 185
D+ GR R G NS + + Y K K+ R
Sbjct: 89 MAKKYPDVLRVDYEGR------KRKFGGRHNSCP---NSPTYRKYAKILAGKLAER---- 135
Query: 186 TRIAYKDDPTIMAWELINE--ARCQADYSGKTLNNWVQEMASYVKSID 231
YKD P I+ W + NE C D K W++E +++++
Sbjct: 136 ----YKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLKERYGTLEALN 179
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 82 LSVCRTWAFSDGGYGALQQ---SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDF 138
+S CRT+ F+ A QQ S G + P+FQ FV A + R L S +
Sbjct: 1 MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 139 GGRP 142
G P
Sbjct: 61 LGNP 64
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 82 LSVCRTWAFSDGGYGALQQ---SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDF 138
+S CRT+ F+ A QQ S G + P+FQ FV A + R L S +
Sbjct: 1 MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 139 GGRP 142
G P
Sbjct: 61 LGNP 64
>pdb|2R6X|A Chain A, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
pdb|2R6X|B Chain B, Structure Of A D35n Variant Pduo-type Atp:co(i)rrinoid
Adenosyltransferase From Lactobacillus Reuteri Complexed
With Atp
Length = 194
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 17/69 (24%)
Query: 166 IVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMAS 225
+VK Y KN K TRI +I YK+DP + A+ +NE LN+WV
Sbjct: 6 MVKIYTKNG-DKGQTRI-IGKQILYKNDPRVAAYGEVNE-----------LNSWV----G 48
Query: 226 YVKSIDNKH 234
Y KS+ N H
Sbjct: 49 YTKSLINSH 57
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
Length = 585
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 78 AAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHD 137
AA G + ++ + G +G L +P + +E + V + IR L +N H
Sbjct: 168 AAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW---LKDNAHA 224
Query: 138 FGGRPQYVN-WARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTI 196
FGG P+++ + +AG+S S + + + +G K + + T +N +
Sbjct: 225 FGGNPEWMTLFGESAGSS--SVNAQLMSPVTRGLVKRGMMQSGT-MNAPWSHMTSEKAVE 281
Query: 197 MAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHL 235
+ LIN+ C A L + S ++S+D K +
Sbjct: 282 IGKALINDCNCNA----SMLKTNPAHVMSCMRSVDAKTI 316
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 29/111 (26%)
Query: 95 YGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGAS 154
+ A + S G +N F G D++++ A++ G +LI + +H Q +W +
Sbjct: 51 WDATEPSQGNFN---FAGADYLVNWAQQNG-KLIRGHTLVWHS-----QLPSWVSSI--- 98
Query: 155 VNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEA 205
+D TN + KNH+ ++TR YK I AW+++NEA
Sbjct: 99 --TDKNTLTNVM-----KNHITTLMTR--------YKGK--IRAWDVVNEA 132
>pdb|2NT8|A Chain A, Atp Bound At The Active Site Of A Pduo Type
Atp:co(i)rrinoid Adenosyltransferase From Lactobacillus
Reuteri
Length = 223
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 17/82 (20%)
Query: 153 ASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYS 212
AS+ + + VK Y KN K TRI +I YK+DP + A+ ++E
Sbjct: 22 ASMTGGQQMGRDRSVKIYTKNG-DKGQTRI-IGKQILYKNDPRVAAYGEVDE-------- 71
Query: 213 GKTLNNWVQEMASYVKSIDNKH 234
LN+WV Y KS+ N H
Sbjct: 72 ---LNSWV----GYTKSLINSH 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,889,775
Number of Sequences: 62578
Number of extensions: 566579
Number of successful extensions: 1586
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 34
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)