Query 016140
Match_columns 394
No_of_seqs 151 out of 1932
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 8E-30 1.7E-34 240.9 22.5 262 43-368 4-280 (281)
2 PRK10150 beta-D-glucuronidase; 99.9 4.3E-25 9.4E-30 229.9 30.8 290 29-383 272-578 (604)
3 COG3934 Endo-beta-mannanase [C 99.9 2E-26 4.3E-31 219.9 7.4 278 67-391 25-313 (587)
4 PF02836 Glyco_hydro_2_C: Glyc 99.9 1.5E-21 3.2E-26 186.5 22.1 158 33-240 1-158 (298)
5 PRK10340 ebgA cryptic beta-D-g 99.9 5.2E-20 1.1E-24 200.2 25.4 235 29-370 314-550 (1021)
6 PRK09525 lacZ beta-D-galactosi 99.9 1.1E-19 2.3E-24 197.4 25.8 239 33-370 336-576 (1027)
7 TIGR03356 BGL beta-galactosida 99.8 7.9E-19 1.7E-23 174.7 23.1 281 66-378 52-403 (427)
8 PF02449 Glyco_hydro_42: Beta- 99.8 2.3E-19 5E-24 176.7 17.0 271 65-384 7-354 (374)
9 PF03198 Glyco_hydro_72: Gluca 99.8 7.3E-18 1.6E-22 156.4 18.9 274 25-381 3-290 (314)
10 PRK09593 arb 6-phospho-beta-gl 99.8 4.1E-17 8.9E-22 164.2 22.9 283 66-381 71-444 (478)
11 PLN02998 beta-glucosidase 99.8 3E-17 6.4E-22 165.5 20.4 280 66-378 80-455 (497)
12 PRK09589 celA 6-phospho-beta-g 99.8 9.6E-17 2.1E-21 161.4 22.8 280 66-378 65-436 (476)
13 PLN02814 beta-glucosidase 99.8 8.4E-17 1.8E-21 162.4 21.8 280 66-378 75-450 (504)
14 TIGR01233 lacG 6-phospho-beta- 99.8 1.4E-16 3.1E-21 160.0 23.3 279 66-378 51-433 (467)
15 PRK15014 6-phospho-beta-glucos 99.8 1.2E-16 2.6E-21 160.6 22.7 279 66-376 67-434 (477)
16 PRK13511 6-phospho-beta-galact 99.8 7.6E-17 1.6E-21 162.3 21.3 280 66-378 52-435 (469)
17 PRK09852 cryptic 6-phospho-bet 99.8 1.3E-16 2.7E-21 160.2 22.4 283 66-381 69-440 (474)
18 PLN02849 beta-glucosidase 99.8 2.4E-16 5.2E-21 159.1 24.2 281 66-378 77-450 (503)
19 COG2723 BglB Beta-glucosidase/ 99.7 3.9E-16 8.5E-21 152.4 24.0 279 67-378 58-421 (460)
20 PF00232 Glyco_hydro_1: Glycos 99.7 2.4E-18 5.3E-23 173.2 8.1 281 66-378 56-421 (455)
21 COG3250 LacZ Beta-galactosidas 99.6 7.9E-15 1.7E-19 154.2 16.3 156 27-242 278-435 (808)
22 PF07745 Glyco_hydro_53: Glyco 99.6 1.7E-14 3.7E-19 137.5 14.9 265 70-390 26-329 (332)
23 PLN03059 beta-galactosidase; P 99.6 1.3E-13 2.9E-18 143.4 19.9 176 30-225 27-210 (840)
24 PF01301 Glyco_hydro_35: Glyco 99.5 1.5E-13 3.2E-18 131.9 16.6 168 39-233 1-173 (319)
25 PF13204 DUF4038: Protein of u 99.5 9.6E-13 2.1E-17 124.7 16.8 227 37-327 2-246 (289)
26 COG2730 BglC Endoglucanase [Ca 99.5 1.1E-12 2.5E-17 130.2 17.1 118 69-207 74-193 (407)
27 smart00633 Glyco_10 Glycosyl h 99.4 2.4E-11 5.3E-16 113.3 21.2 229 95-384 3-245 (254)
28 COG3867 Arabinogalactan endo-1 99.3 2.9E-10 6.3E-15 103.7 20.5 250 69-365 64-342 (403)
29 KOG0626 Beta-glucosidase, lact 99.3 2E-10 4.2E-15 113.7 20.8 281 66-378 89-477 (524)
30 PF12876 Cellulase-like: Sugar 99.3 2.9E-12 6.3E-17 99.5 5.6 75 190-281 5-88 (88)
31 COG1874 LacA Beta-galactosidas 99.2 1.5E-10 3.3E-15 119.1 13.6 176 35-233 3-192 (673)
32 KOG0496 Beta-galactosidase [Ca 99.2 3.1E-10 6.6E-15 114.2 13.2 156 30-207 17-177 (649)
33 PF01229 Glyco_hydro_39: Glyco 99.0 3.6E-09 7.7E-14 107.8 11.6 279 66-382 37-345 (486)
34 PF00331 Glyco_hydro_10: Glyco 98.8 1.5E-08 3.3E-13 97.5 8.7 247 73-373 26-291 (320)
35 COG5309 Exo-beta-1,3-glucanase 98.6 1E-05 2.2E-10 73.4 21.2 203 66-347 61-269 (305)
36 PF14488 DUF4434: Domain of un 98.5 7.4E-06 1.6E-10 71.1 14.8 141 64-240 16-161 (166)
37 PF11790 Glyco_hydro_cc: Glyco 98.5 2.4E-06 5.2E-11 79.0 12.3 139 199-364 69-211 (239)
38 KOG2230 Predicted beta-mannosi 98.3 8.5E-06 1.8E-10 80.8 13.4 119 39-207 329-447 (867)
39 COG3693 XynA Beta-1,4-xylanase 98.2 0.00013 2.9E-09 68.3 16.4 117 95-239 69-192 (345)
40 PF14587 Glyco_hydr_30_2: O-Gl 98.1 0.00056 1.2E-08 66.3 20.4 221 78-328 57-314 (384)
41 PF02055 Glyco_hydro_30: O-Gly 97.8 0.00087 1.9E-08 68.2 16.0 255 70-378 103-394 (496)
42 COG5520 O-Glycosyl hydrolase [ 97.6 0.019 4.1E-07 54.7 20.0 239 68-367 65-311 (433)
43 PF02638 DUF187: Glycosyl hydr 97.2 0.032 6.9E-07 53.6 17.8 208 66-283 17-263 (311)
44 PF03662 Glyco_hydro_79n: Glyc 97.2 0.0021 4.5E-08 61.4 9.1 23 110-132 108-130 (319)
45 PF13200 DUF4015: Putative gly 96.8 0.49 1.1E-05 45.4 21.7 277 66-366 11-313 (316)
46 PRK10785 maltodextrin glucosid 96.4 0.044 9.5E-07 57.5 13.0 159 66-237 177-370 (598)
47 COG3934 Endo-beta-mannanase [C 96.0 0.00047 1E-08 67.7 -3.8 339 8-366 11-413 (587)
48 smart00642 Aamy Alpha-amylase 95.9 0.044 9.5E-07 47.6 8.2 67 66-132 17-91 (166)
49 COG3534 AbfA Alpha-L-arabinofu 95.8 0.19 4.1E-06 49.6 13.0 183 66-283 46-246 (501)
50 TIGR01515 branching_enzym alph 95.6 0.22 4.9E-06 52.4 13.8 167 68-238 156-347 (613)
51 PRK14706 glycogen branching en 95.5 0.29 6.3E-06 51.7 14.2 160 69-237 169-355 (639)
52 PRK05402 glycogen branching en 95.5 0.29 6.2E-06 52.7 14.5 162 70-237 268-455 (726)
53 COG0296 GlgB 1,4-alpha-glucan 95.4 0.21 4.5E-06 52.1 12.3 175 51-234 144-351 (628)
54 PRK12568 glycogen branching en 95.4 0.39 8.4E-06 51.2 14.5 163 68-237 270-459 (730)
55 cd06565 GH20_GcnA-like Glycosy 95.3 0.44 9.6E-06 45.6 13.7 148 66-232 15-179 (301)
56 COG1649 Uncharacterized protei 95.3 2 4.4E-05 42.7 18.2 165 65-240 61-272 (418)
57 PRK09936 hypothetical protein; 95.2 2 4.4E-05 40.3 16.8 59 65-132 35-93 (296)
58 PF00128 Alpha-amylase: Alpha 95.2 0.034 7.5E-07 52.6 5.5 64 68-131 4-72 (316)
59 PLN02960 alpha-amylase 95.1 1.3 2.7E-05 48.0 17.2 165 69-238 418-609 (897)
60 PRK14705 glycogen branching en 95.0 0.51 1.1E-05 53.1 14.6 165 69-237 767-955 (1224)
61 PLN00196 alpha-amylase; Provis 94.9 0.29 6.2E-06 49.2 11.3 64 66-131 42-112 (428)
62 PLN02161 beta-amylase 94.8 0.4 8.8E-06 48.2 11.9 132 66-229 115-251 (531)
63 PLN02801 beta-amylase 94.8 0.32 6.9E-06 48.9 11.2 130 66-229 35-171 (517)
64 cd06564 GH20_DspB_LnbB-like Gl 94.8 1.9 4.1E-05 41.7 16.5 147 66-231 15-193 (326)
65 KOG2566 Beta-glucocerebrosidas 94.8 1.5 3.2E-05 42.6 14.9 222 107-378 173-419 (518)
66 cd02742 GH20_hexosaminidase Be 94.7 1.1 2.5E-05 42.8 14.6 146 66-231 14-184 (303)
67 PLN02803 beta-amylase 94.7 0.31 6.6E-06 49.3 10.8 130 66-229 105-241 (548)
68 PLN02905 beta-amylase 94.6 0.38 8.2E-06 49.4 11.1 130 66-229 284-420 (702)
69 PLN02705 beta-amylase 94.5 0.37 8E-06 49.4 10.9 130 66-229 266-402 (681)
70 PF14871 GHL6: Hypothetical gl 94.5 0.15 3.2E-06 42.5 6.9 106 71-181 3-122 (132)
71 PLN00197 beta-amylase; Provisi 94.3 0.45 9.8E-06 48.3 11.0 130 66-229 125-261 (573)
72 PLN02447 1,4-alpha-glucan-bran 94.0 2.2 4.8E-05 45.7 15.9 162 69-237 252-443 (758)
73 PLN02361 alpha-amylase 93.8 0.37 8E-06 47.9 9.4 85 42-131 8-96 (401)
74 PRK12313 glycogen branching en 93.2 0.31 6.8E-06 51.6 8.2 160 70-237 173-359 (633)
75 cd06568 GH20_SpHex_like A subg 92.6 3 6.6E-05 40.4 13.5 143 66-231 16-188 (329)
76 TIGR02402 trehalose_TreZ malto 92.5 0.45 9.8E-06 49.4 8.0 155 65-239 108-279 (542)
77 PRK09441 cytoplasmic alpha-amy 92.4 0.73 1.6E-05 47.1 9.4 64 68-131 22-101 (479)
78 TIGR02456 treS_nterm trehalose 92.1 0.5 1.1E-05 49.1 7.9 67 65-131 25-96 (539)
79 TIGR02403 trehalose_treC alpha 92.1 0.54 1.2E-05 48.8 8.1 66 66-131 25-95 (543)
80 cd06563 GH20_chitobiase-like T 92.1 5.6 0.00012 39.0 14.8 109 66-181 16-163 (357)
81 PRK10933 trehalose-6-phosphate 91.7 0.64 1.4E-05 48.4 8.1 63 66-131 31-101 (551)
82 cd06562 GH20_HexA_HexB-like Be 91.3 6 0.00013 38.7 13.9 111 66-181 16-147 (348)
83 TIGR01531 glyc_debranch glycog 91.2 0.7 1.5E-05 52.2 8.0 91 38-131 103-205 (1464)
84 COG3664 XynB Beta-xylosidase [ 91.2 5.2 0.00011 39.4 13.0 247 77-384 14-279 (428)
85 PRK09505 malS alpha-amylase; R 91.1 0.8 1.7E-05 48.7 8.1 66 66-131 228-312 (683)
86 PF00728 Glyco_hydro_20: Glyco 90.9 1 2.3E-05 43.7 8.4 152 66-233 16-211 (351)
87 cd06570 GH20_chitobiase-like_1 90.8 5.2 0.00011 38.4 12.7 65 66-133 16-90 (311)
88 PLN02784 alpha-amylase 90.6 1.8 4E-05 46.7 10.1 85 43-131 500-588 (894)
89 PRK03705 glycogen debranching 90.4 0.69 1.5E-05 49.1 6.9 58 73-131 184-262 (658)
90 TIGR02104 pulA_typeI pullulana 90.4 0.7 1.5E-05 48.7 7.0 144 72-237 168-346 (605)
91 PF01373 Glyco_hydro_14: Glyco 89.8 0.42 9E-06 47.0 4.4 122 67-207 15-158 (402)
92 TIGR02103 pullul_strch alpha-1 89.3 9.9 0.00021 41.8 14.6 112 109-243 402-527 (898)
93 TIGR02100 glgX_debranch glycog 88.9 1.1 2.5E-05 47.8 7.2 58 73-131 189-265 (688)
94 PF01120 Alpha_L_fucos: Alpha- 88.5 20 0.00043 35.0 15.2 139 67-238 90-243 (346)
95 COG3589 Uncharacterized conser 88.1 1.3 2.8E-05 42.3 6.1 56 67-132 15-70 (360)
96 PF07488 Glyco_hydro_67M: Glyc 87.6 2.7 5.8E-05 39.7 7.8 103 66-203 55-158 (328)
97 PF05913 DUF871: Bacterial pro 87.6 1.1 2.3E-05 43.9 5.5 68 49-132 1-68 (357)
98 TIGR02401 trehalose_TreY malto 87.2 2.5 5.4E-05 45.8 8.4 66 66-131 14-85 (825)
99 cd06602 GH31_MGAM_SI_GAA This 87.0 13 0.00027 36.2 12.7 163 66-243 22-204 (339)
100 PF05089 NAGLU: Alpha-N-acetyl 86.8 6.7 0.00015 37.8 10.3 158 65-239 16-218 (333)
101 PRK14511 maltooligosyl trehalo 86.5 2.8 6.1E-05 45.6 8.4 66 66-131 18-89 (879)
102 PRK14510 putative bifunctional 86.3 1.6 3.5E-05 49.7 6.8 59 72-131 191-267 (1221)
103 KOG3698 Hyaluronoglucosaminida 85.7 6.7 0.00015 40.1 9.9 81 42-131 11-94 (891)
104 cd06603 GH31_GANC_GANAB_alpha 84.7 31 0.00068 33.4 14.2 129 66-207 22-165 (339)
105 PF12891 Glyco_hydro_44: Glyco 84.7 1.2 2.5E-05 40.8 3.8 61 172-241 107-179 (239)
106 COG0366 AmyA Glycosidases [Car 84.2 3.2 7E-05 42.2 7.5 66 66-131 27-97 (505)
107 COG1523 PulA Type II secretory 83.9 2.7 5.9E-05 44.7 6.7 57 74-131 206-285 (697)
108 TIGR02102 pullulan_Gpos pullul 83.6 3.9 8.5E-05 45.9 8.1 64 67-131 479-575 (1111)
109 TIGR02455 TreS_stutzeri trehal 83.0 3.9 8.4E-05 42.9 7.2 61 71-131 77-150 (688)
110 PF07555 NAGidase: beta-N-acet 82.4 9.1 0.0002 36.7 9.1 68 63-133 10-78 (306)
111 PRK14507 putative bifunctional 82.0 4.8 0.0001 47.0 8.2 67 66-132 756-828 (1693)
112 PF03659 Glyco_hydro_71: Glyco 81.9 12 0.00025 37.2 10.0 54 66-132 15-68 (386)
113 cd06545 GH18_3CO4_chitinase Th 81.5 32 0.0007 31.7 12.4 93 111-239 46-138 (253)
114 KOG0470 1,4-alpha-glucan branc 81.4 3.1 6.6E-05 43.8 5.9 65 67-131 254-331 (757)
115 TIGR01370 cysRS possible cyste 80.9 39 0.00084 32.5 12.8 71 163-238 141-211 (315)
116 PLN02877 alpha-amylase/limit d 80.3 5.2 0.00011 44.1 7.4 23 109-131 464-486 (970)
117 cd06547 GH85_ENGase Endo-beta- 80.0 7.6 0.00017 37.8 7.8 95 115-237 50-145 (339)
118 PRK09856 fructoselysine 3-epim 79.9 4 8.7E-05 38.1 5.8 61 68-132 90-150 (275)
119 COG3623 SgaU Putative L-xylulo 79.1 10 0.00023 34.5 7.7 70 107-207 92-161 (287)
120 cd06600 GH31_MGAM-like This fa 79.0 62 0.0014 31.1 14.2 164 66-243 22-200 (317)
121 cd06569 GH20_Sm-chitobiase-lik 77.7 8.4 0.00018 39.0 7.6 65 66-133 20-119 (445)
122 cd02875 GH18_chitobiase Chitob 77.6 21 0.00045 35.1 10.2 90 115-239 68-157 (358)
123 PRK13398 3-deoxy-7-phosphohept 77.4 29 0.00063 32.5 10.6 80 40-134 21-101 (266)
124 smart00812 Alpha_L_fucos Alpha 75.9 81 0.0017 31.3 13.8 139 67-234 80-226 (384)
125 KOG2233 Alpha-N-acetylglucosam 75.8 17 0.00036 36.7 8.7 156 66-238 76-280 (666)
126 KOG4701 Chitinase [Cell wall/m 74.4 92 0.002 30.6 14.7 89 269-365 204-293 (568)
127 PRK13210 putative L-xylulose 5 74.3 7.8 0.00017 36.2 6.1 61 68-132 94-154 (284)
128 PLN03244 alpha-amylase; Provis 73.8 48 0.001 35.9 12.0 125 110-236 440-582 (872)
129 PF02065 Melibiase: Melibiase; 72.6 80 0.0017 31.4 12.9 176 48-240 41-234 (394)
130 PRK14565 triosephosphate isome 72.0 34 0.00075 31.4 9.4 119 74-240 78-196 (237)
131 TIGR00542 hxl6Piso_put hexulos 70.7 12 0.00025 35.1 6.4 61 68-132 94-154 (279)
132 PF14883 GHL13: Hypothetical g 68.9 86 0.0019 29.7 11.3 159 67-235 16-188 (294)
133 PF01261 AP_endonuc_2: Xylose 68.6 12 0.00027 32.7 5.8 65 67-133 70-134 (213)
134 PRK13209 L-xylulose 5-phosphat 68.1 12 0.00026 35.0 5.8 61 68-132 99-159 (283)
135 PF01261 AP_endonuc_2: Xylose 68.1 65 0.0014 27.9 10.4 130 68-234 27-158 (213)
136 cd06591 GH31_xylosidase_XylS X 67.9 1.2E+02 0.0025 29.2 14.1 63 66-132 22-87 (319)
137 TIGR03849 arch_ComA phosphosul 67.8 20 0.00043 32.9 6.8 52 67-132 70-121 (237)
138 TIGR03234 OH-pyruv-isom hydrox 66.7 15 0.00033 33.7 6.2 62 68-133 84-145 (254)
139 TIGR00542 hxl6Piso_put hexulos 65.9 1.1E+02 0.0023 28.5 11.9 66 108-204 91-156 (279)
140 PRK13397 3-deoxy-7-phosphohept 65.5 28 0.0006 32.3 7.4 63 66-134 27-89 (250)
141 cd06595 GH31_xylosidase_XylS-l 64.8 60 0.0013 30.8 9.9 130 66-208 23-163 (292)
142 PF10566 Glyco_hydro_97: Glyco 64.5 48 0.001 31.2 8.9 109 66-181 30-149 (273)
143 cd00019 AP2Ec AP endonuclease 62.0 24 0.00051 33.0 6.6 61 67-132 84-144 (279)
144 PF14701 hDGE_amylase: glucano 61.9 28 0.00061 34.8 7.2 66 66-131 20-97 (423)
145 PRK14582 pgaB outer membrane N 60.5 1.4E+02 0.0031 31.9 12.5 126 66-197 332-471 (671)
146 PRK09997 hydroxypyruvate isome 60.0 25 0.00054 32.5 6.3 62 68-133 85-146 (258)
147 PRK12595 bifunctional 3-deoxy- 59.7 82 0.0018 31.0 10.0 80 40-134 112-192 (360)
148 PRK08673 3-deoxy-7-phosphohept 59.7 55 0.0012 31.8 8.6 76 43-133 91-166 (335)
149 COG3661 AguA Alpha-glucuronida 59.0 51 0.0011 33.0 8.1 62 66-132 181-242 (684)
150 PF02679 ComA: (2R)-phospho-3- 58.1 23 0.00051 32.6 5.5 52 67-132 83-134 (244)
151 cd07937 DRE_TIM_PC_TC_5S Pyruv 57.9 33 0.00071 32.2 6.7 48 68-131 91-138 (275)
152 PRK00042 tpiA triosephosphate 57.6 1.3E+02 0.0028 27.9 10.4 50 74-133 79-128 (250)
153 PF08194 DIM: DIM protein; In 56.9 15 0.00033 23.0 2.8 10 28-37 21-30 (36)
154 cd02874 GH18_CFLE_spore_hydrol 56.5 77 0.0017 30.1 9.2 95 114-238 48-142 (313)
155 cd06601 GH31_lyase_GLase GLase 56.4 65 0.0014 31.2 8.6 115 66-207 22-136 (332)
156 PF07071 DUF1341: Protein of u 55.5 36 0.00078 30.3 5.9 46 68-127 135-180 (218)
157 PF09370 TIM-br_sig_trns: TIM- 55.4 30 0.00064 32.3 5.7 73 43-132 80-158 (268)
158 PF04914 DltD_C: DltD C-termin 55.2 95 0.0021 25.7 8.2 82 107-219 32-116 (130)
159 PTZ00333 triosephosphate isome 55.0 1.6E+02 0.0034 27.5 10.5 49 75-133 83-131 (255)
160 cd06542 GH18_EndoS-like Endo-b 54.7 1.7E+02 0.0037 26.7 11.7 100 110-239 50-151 (255)
161 PRK14040 oxaloacetate decarbox 53.0 44 0.00096 35.2 7.3 47 68-130 97-143 (593)
162 KOG2499 Beta-N-acetylhexosamin 52.7 38 0.00082 34.3 6.2 66 66-132 196-271 (542)
163 PRK01060 endonuclease IV; Prov 52.2 90 0.002 29.0 8.8 51 69-127 13-63 (281)
164 PRK14042 pyruvate carboxylase 52.2 58 0.0013 34.3 7.9 49 67-131 95-143 (596)
165 TIGR01626 ytfJ_HI0045 conserve 51.9 38 0.00082 29.9 5.6 54 27-84 26-91 (184)
166 COG3684 LacD Tagatose-1,6-bisp 51.5 33 0.00071 31.8 5.2 54 74-134 117-170 (306)
167 cd01299 Met_dep_hydrolase_A Me 50.8 73 0.0016 30.5 8.1 61 66-131 118-180 (342)
168 cd06604 GH31_glucosidase_II_Ma 50.4 2.4E+02 0.0053 27.2 13.9 64 66-132 22-85 (339)
169 PF10566 Glyco_hydro_97: Glyco 50.2 41 0.00088 31.7 5.8 50 70-133 108-157 (273)
170 PRK13209 L-xylulose 5-phosphat 50.1 2.1E+02 0.0046 26.4 11.8 100 67-202 56-159 (283)
171 smart00481 POLIIIAc DNA polyme 49.5 66 0.0014 22.7 5.8 47 68-131 15-61 (67)
172 PRK12581 oxaloacetate decarbox 49.0 72 0.0016 32.5 7.8 48 68-131 105-152 (468)
173 PRK12331 oxaloacetate decarbox 49.0 47 0.001 33.6 6.5 48 68-131 96-143 (448)
174 cd07944 DRE_TIM_HOA_like 4-hyd 48.3 45 0.00098 31.2 5.9 46 71-132 85-130 (266)
175 PLN02763 hydrolase, hydrolyzin 48.0 4E+02 0.0086 30.0 13.7 64 66-132 199-262 (978)
176 cd02872 GH18_chitolectin_chito 48.0 1.6E+02 0.0035 28.5 10.1 104 110-239 55-159 (362)
177 cd06592 GH31_glucosidase_KIAA1 48.0 42 0.00092 32.0 5.8 63 66-133 28-92 (303)
178 PRK09856 fructoselysine 3-epim 47.0 2.3E+02 0.0051 26.0 11.4 93 107-237 86-179 (275)
179 cd07948 DRE_TIM_HCS Saccharomy 46.3 31 0.00066 32.2 4.4 60 71-132 74-133 (262)
180 PLN02429 triosephosphate isome 45.9 2.7E+02 0.0058 26.9 10.7 21 113-133 165-189 (315)
181 PRK12399 tagatose 1,6-diphosph 45.9 33 0.00072 32.9 4.6 54 74-133 111-164 (324)
182 PF06415 iPGM_N: BPG-independe 45.8 59 0.0013 29.6 6.0 58 67-132 45-102 (223)
183 PF14481 Fimbrial_PilY2: Type 45.8 14 0.00031 29.0 1.8 44 6-49 1-55 (118)
184 cd06589 GH31 The enzymes of gl 45.0 2.6E+02 0.0056 25.9 13.6 64 66-132 22-87 (265)
185 cd02871 GH18_chitinase_D-like 44.7 2.9E+02 0.0062 26.4 11.5 49 111-181 60-108 (312)
186 TIGR03581 EF_0839 conserved hy 44.7 49 0.0011 29.9 5.1 46 68-127 135-180 (236)
187 TIGR01361 DAHP_synth_Bsub phos 44.5 1.3E+02 0.0028 28.1 8.3 85 33-134 14-99 (260)
188 PRK12858 tagatose 1,6-diphosph 44.3 39 0.00085 32.9 4.9 55 72-132 110-164 (340)
189 COG3280 TreY Maltooligosyl tre 44.2 77 0.0017 34.0 7.2 67 66-132 17-89 (889)
190 cd07943 DRE_TIM_HOA 4-hydroxy- 44.1 57 0.0012 30.3 5.9 46 71-132 88-133 (263)
191 COG1306 Uncharacterized conser 43.9 45 0.00098 31.6 5.0 64 66-131 75-144 (400)
192 COG5016 Pyruvate/oxaloacetate 43.3 73 0.0016 31.6 6.5 50 67-132 97-146 (472)
193 PRK13396 3-deoxy-7-phosphohept 43.3 3.3E+02 0.0071 26.7 11.4 89 30-133 82-174 (352)
194 PRK12677 xylose isomerase; Pro 43.2 48 0.001 32.8 5.5 65 68-132 114-180 (384)
195 PRK08195 4-hyroxy-2-oxovalerat 42.9 58 0.0013 31.6 6.0 47 71-133 91-137 (337)
196 TIGR03217 4OH_2_O_val_ald 4-hy 42.9 63 0.0014 31.3 6.2 46 71-132 90-135 (333)
197 PRK14582 pgaB outer membrane N 42.2 47 0.001 35.5 5.5 68 66-135 70-143 (671)
198 cd07939 DRE_TIM_NifV Streptomy 42.1 35 0.00076 31.6 4.2 60 71-132 72-131 (259)
199 PRK12330 oxaloacetate decarbox 42.0 99 0.0021 31.8 7.6 49 67-131 96-144 (499)
200 PRK04161 tagatose 1,6-diphosph 41.9 44 0.00096 32.1 4.7 56 73-134 112-167 (329)
201 TIGR01232 lacD tagatose 1,6-di 41.8 45 0.00097 32.1 4.7 55 74-134 112-166 (325)
202 KOG0471 Alpha-amylase [Carbohy 41.7 49 0.0011 34.5 5.5 64 68-131 40-108 (545)
203 PRK14581 hmsF outer membrane N 41.5 84 0.0018 33.6 7.2 64 66-133 70-141 (672)
204 PRK09997 hydroxypyruvate isome 41.2 2.8E+02 0.0061 25.3 12.8 58 165-235 116-173 (258)
205 KOG2331 Predicted glycosylhydr 40.3 1E+02 0.0022 30.8 7.0 92 117-237 117-208 (526)
206 PLN02561 triosephosphate isome 39.9 3.1E+02 0.0068 25.5 12.7 50 74-133 81-130 (253)
207 smart00636 Glyco_18 Glycosyl h 39.2 2.5E+02 0.0053 26.8 9.8 99 112-240 53-155 (334)
208 PRK09989 hypothetical protein; 39.1 71 0.0015 29.4 5.7 61 68-132 85-145 (258)
209 PRK05692 hydroxymethylglutaryl 39.0 46 0.001 31.5 4.5 61 70-132 81-141 (287)
210 PRK14567 triosephosphate isome 38.6 3.3E+02 0.0071 25.3 11.2 49 75-133 79-127 (253)
211 cd00311 TIM Triosephosphate is 38.1 3.3E+02 0.007 25.1 12.2 50 74-133 77-126 (242)
212 TIGR03586 PseI pseudaminic aci 37.1 1.3E+02 0.0029 29.0 7.4 68 66-133 15-99 (327)
213 COG4130 Predicted sugar epimer 36.1 2.1E+02 0.0046 26.0 7.7 81 47-132 63-143 (272)
214 PF00332 Glyco_hydro_17: Glyco 35.9 3.9E+02 0.0084 25.6 10.3 113 70-239 15-129 (310)
215 TIGR01108 oadA oxaloacetate de 35.6 1E+02 0.0022 32.5 6.7 48 68-131 91-138 (582)
216 TIGR02090 LEU1_arch isopropylm 35.4 51 0.0011 32.4 4.3 62 70-133 73-134 (363)
217 PLN02229 alpha-galactosidase 34.6 1.4E+02 0.0031 30.0 7.2 80 46-132 61-149 (427)
218 COG1501 Alpha-glucosidases, fa 34.1 6.2E+02 0.013 27.7 12.5 159 66-243 278-466 (772)
219 cd06593 GH31_xylosidase_YicI Y 34.0 89 0.0019 29.7 5.7 158 66-239 22-205 (308)
220 PRK09282 pyruvate carboxylase 33.4 1E+02 0.0022 32.5 6.3 48 68-131 96-143 (592)
221 PRK14459 ribosomal RNA large s 33.3 1.6E+02 0.0034 29.2 7.2 60 66-131 295-355 (373)
222 PLN02692 alpha-galactosidase 33.1 2.6E+02 0.0056 28.0 8.7 82 43-131 50-141 (412)
223 cd07945 DRE_TIM_CMS Leptospira 33.1 58 0.0013 30.7 4.1 61 71-133 77-137 (280)
224 COG1464 NlpA ABC-type metal io 32.2 3.1E+02 0.0067 25.7 8.5 62 68-131 42-104 (268)
225 smart00518 AP2Ec AP endonuclea 31.4 1.4E+02 0.003 27.5 6.4 52 70-129 12-63 (273)
226 COG3142 CutC Uncharacterized p 31.1 77 0.0017 28.9 4.3 59 48-124 59-117 (241)
227 cd06549 GH18_trifunctional GH1 31.0 4.6E+02 0.01 24.7 12.3 62 161-238 82-143 (298)
228 PLN02746 hydroxymethylglutaryl 30.7 71 0.0015 31.2 4.4 60 70-131 123-182 (347)
229 cd03174 DRE_TIM_metallolyase D 30.2 82 0.0018 28.9 4.6 59 71-132 77-136 (265)
230 PRK13210 putative L-xylulose 5 30.2 4.4E+02 0.0095 24.2 12.7 63 67-130 51-113 (284)
231 PF08139 LPAM_1: Prokaryotic m 29.9 64 0.0014 18.5 2.3 15 10-24 10-24 (25)
232 KOG0259 Tyrosine aminotransfer 29.9 90 0.002 30.8 4.7 72 66-145 181-253 (447)
233 cd07941 DRE_TIM_LeuA3 Desulfob 29.9 76 0.0016 29.7 4.3 58 72-131 82-139 (273)
234 KOG1261 Malate synthase [Energ 29.8 74 0.0016 31.3 4.1 111 69-206 267-390 (552)
235 PF10035 DUF2179: Uncharacteri 29.8 58 0.0012 22.1 2.6 20 220-239 29-48 (55)
236 PF00682 HMGL-like: HMGL-like 29.7 1.7E+02 0.0037 26.4 6.6 65 66-132 65-129 (237)
237 PRK09989 hypothetical protein; 29.6 4.4E+02 0.0094 24.0 13.8 57 166-235 117-173 (258)
238 PRK10781 rcsF outer membrane l 29.6 2.6E+02 0.0056 23.2 6.8 46 44-89 60-108 (133)
239 COG0276 HemH Protoheme ferro-l 29.5 5.2E+02 0.011 24.9 12.6 63 159-230 157-219 (320)
240 PRK11858 aksA trans-homoaconit 29.4 80 0.0017 31.2 4.6 61 70-132 77-137 (378)
241 PF03644 Glyco_hydro_85: Glyco 29.3 1.3E+02 0.0027 29.0 5.7 93 116-237 47-140 (311)
242 TIGR03128 RuMP_HxlA 3-hexulose 29.3 1.7E+02 0.0037 25.7 6.4 44 73-133 68-111 (206)
243 COG1099 Predicted metal-depend 29.1 71 0.0015 29.1 3.7 58 68-133 11-72 (254)
244 PRK05434 phosphoglyceromutase; 28.6 1.9E+02 0.0041 29.9 7.1 58 67-132 127-184 (507)
245 COG0149 TpiA Triosephosphate i 28.5 4.9E+02 0.011 24.2 11.1 49 75-133 82-130 (251)
246 PF01055 Glyco_hydro_31: Glyco 28.4 1.2E+02 0.0025 30.5 5.7 163 66-243 41-238 (441)
247 TIGR02660 nifV_homocitr homoci 28.4 72 0.0016 31.3 4.0 61 71-133 75-135 (365)
248 PRK13125 trpA tryptophan synth 27.9 1.6E+02 0.0035 26.9 6.1 49 69-132 89-137 (244)
249 PRK14041 oxaloacetate decarbox 27.9 1.4E+02 0.0031 30.4 6.1 48 68-131 95-142 (467)
250 PF00121 TIM: Triosephosphate 27.7 4.9E+02 0.011 24.0 9.3 50 74-133 77-126 (244)
251 COG0469 PykF Pyruvate kinase [ 27.4 1.6E+02 0.0036 30.0 6.3 50 70-131 19-68 (477)
252 COG2108 Uncharacterized conser 27.1 1.5E+02 0.0032 28.6 5.6 50 70-132 123-172 (353)
253 PF05706 CDKN3: Cyclin-depende 26.8 89 0.0019 27.1 3.8 48 67-128 57-104 (168)
254 PF14881 Tubulin_3: Tubulin do 26.5 3.1E+02 0.0068 23.9 7.3 55 107-201 57-113 (180)
255 KOG1348 Asparaginyl peptidases 26.2 3E+02 0.0065 27.1 7.4 55 44-104 44-102 (477)
256 PF13547 GTA_TIM: GTA TIM-barr 26.1 4E+02 0.0087 25.3 8.1 84 195-283 19-109 (299)
257 PF09476 Pilus_CpaD: Pilus bio 26.1 4.7E+02 0.01 23.3 9.1 51 66-126 58-108 (203)
258 TIGR03234 OH-pyruv-isom hydrox 25.9 5E+02 0.011 23.5 12.3 20 69-88 15-34 (254)
259 COG3525 Chb N-acetyl-beta-hexo 25.8 3E+02 0.0065 29.3 7.9 64 66-132 276-367 (732)
260 TIGR02522 pilus_cpaD pilus (Ca 25.6 4.8E+02 0.01 23.2 9.1 47 66-127 59-105 (198)
261 PF07799 DUF1643: Protein of u 25.2 2.4E+02 0.0051 23.1 6.1 41 43-87 11-51 (136)
262 PF13380 CoA_binding_2: CoA bi 24.9 1.4E+02 0.0031 23.8 4.6 43 66-128 64-106 (116)
263 COG2089 SpsE Sialic acid synth 24.9 5.3E+02 0.012 25.0 8.8 91 34-133 3-112 (347)
264 PLN02607 1-aminocyclopropane-1 24.7 2.5E+02 0.0054 28.4 7.2 59 66-132 183-241 (447)
265 COG3054 Predicted transcriptio 24.6 1.3E+02 0.0027 25.7 4.1 82 6-87 1-94 (184)
266 PRK12822 phospho-2-dehydro-3-d 24.5 2.9E+02 0.0062 27.1 7.1 82 44-134 52-147 (356)
267 TIGR01307 pgm_bpd_ind 2,3-bisp 24.4 2.5E+02 0.0055 28.9 7.1 58 67-132 123-180 (501)
268 PRK09058 coproporphyrinogen II 24.3 1.5E+02 0.0032 30.1 5.5 60 70-133 162-222 (449)
269 COG0602 NrdG Organic radical a 24.2 3.1E+02 0.0066 24.7 7.0 87 32-131 10-106 (212)
270 COG1809 (2R)-phospho-3-sulfola 24.1 1.9E+02 0.0042 26.3 5.4 52 67-132 89-140 (258)
271 cd02877 GH18_hevamine_XipI_cla 23.7 6.2E+02 0.013 23.8 12.6 57 76-132 19-80 (280)
272 cd07938 DRE_TIM_HMGL 3-hydroxy 23.5 1.3E+02 0.0027 28.3 4.6 60 71-132 76-135 (274)
273 PF13199 Glyco_hydro_66: Glyco 23.2 2.7E+02 0.0058 29.2 7.1 64 66-131 116-190 (559)
274 PTZ00445 p36-lilke protein; Pr 23.1 2.5E+02 0.0054 25.5 6.0 65 66-133 27-100 (219)
275 PRK10894 lipopolysaccharide tr 23.1 1.9E+02 0.0042 25.1 5.4 25 27-51 26-52 (180)
276 COG2876 AroA 3-deoxy-D-arabino 22.8 2.5E+02 0.0054 26.3 6.0 62 66-133 57-118 (286)
277 COG3623 SgaU Putative L-xylulo 22.7 2E+02 0.0044 26.5 5.3 62 67-132 95-156 (287)
278 PRK11372 lysozyme inhibitor; P 22.7 1.7E+02 0.0037 23.4 4.5 17 10-26 5-21 (109)
279 PRK09810 entericidin A; Provis 22.5 83 0.0018 20.4 2.1 21 6-26 2-22 (41)
280 PRK00278 trpC indole-3-glycero 22.3 2.9E+02 0.0064 25.6 6.8 23 111-133 147-169 (260)
281 COG2945 Predicted hydrolase of 22.2 2.7E+02 0.0059 24.9 5.9 54 66-125 45-100 (210)
282 PF12984 DUF3868: Domain of un 22.1 1.1E+02 0.0024 24.7 3.3 18 30-47 27-44 (115)
283 PRK14453 chloramphenicol/florf 22.1 3.8E+02 0.0082 26.2 7.7 61 66-131 262-326 (347)
284 PRK10318 hypothetical protein; 21.9 72 0.0016 26.0 2.2 15 31-45 34-48 (121)
285 cd07947 DRE_TIM_Re_CS Clostrid 21.9 1.3E+02 0.0028 28.4 4.2 61 70-132 76-136 (279)
286 cd06599 GH31_glycosidase_Aec37 21.8 1.9E+02 0.0042 27.6 5.6 65 67-133 28-95 (317)
287 COG0269 SgbH 3-hexulose-6-phos 21.8 3E+02 0.0066 24.9 6.3 45 74-135 73-117 (217)
288 cd07940 DRE_TIM_IPMS 2-isoprop 21.6 1.2E+02 0.0026 28.2 4.0 59 71-131 72-134 (268)
289 TIGR01211 ELP3 histone acetylt 21.5 1.9E+02 0.004 30.1 5.6 58 70-133 205-264 (522)
290 COG4124 ManB Beta-mannanase [C 21.4 7.7E+02 0.017 24.1 11.8 120 190-328 174-301 (355)
291 cd04726 KGPDC_HPS 3-Keto-L-gul 21.4 2.8E+02 0.0061 24.1 6.3 44 73-133 69-112 (202)
292 TIGR02631 xylA_Arthro xylose i 21.2 2E+02 0.0044 28.5 5.6 65 68-132 115-181 (382)
293 TIGR00539 hemN_rel putative ox 21.0 2E+02 0.0043 28.0 5.6 59 70-132 99-158 (360)
294 PRK10426 alpha-glucosidase; Pr 21.0 1E+03 0.022 25.3 15.7 159 67-243 220-413 (635)
295 PRK08227 autoinducer 2 aldolas 20.9 1.6E+02 0.0035 27.5 4.6 52 68-129 94-145 (264)
296 PRK06294 coproporphyrinogen II 20.8 1.8E+02 0.0038 28.6 5.2 60 70-133 102-162 (370)
297 PRK11572 copper homeostasis pr 20.8 2.9E+02 0.0063 25.6 6.2 52 66-133 71-122 (248)
298 PF02057 Glyco_hydro_59: Glyco 20.8 1.6E+02 0.0034 31.4 4.9 130 199-379 177-321 (669)
299 TIGR02803 ExbD_1 TonB system t 20.7 4.4E+02 0.0096 21.0 9.4 46 66-126 68-114 (122)
300 PRK11443 lipoprotein; Provisio 20.7 84 0.0018 25.8 2.4 18 11-28 4-21 (124)
301 CHL00200 trpA tryptophan synth 20.6 2.6E+02 0.0057 26.1 6.0 45 69-131 107-151 (263)
302 TIGR03471 HpnJ hopanoid biosyn 20.6 1.9E+02 0.0042 29.3 5.6 58 71-132 287-344 (472)
303 PRK09261 phospho-2-dehydro-3-d 20.4 3.7E+02 0.0081 26.3 7.1 83 43-134 51-147 (349)
304 PRK12755 phospho-2-dehydro-3-d 20.3 4E+02 0.0088 26.1 7.2 81 44-133 53-147 (353)
305 TIGR00034 aroFGH phospho-2-deh 20.2 3.8E+02 0.0083 26.1 7.1 82 43-133 46-141 (344)
306 TIGR01235 pyruv_carbox pyruvat 20.2 3.7E+02 0.0079 31.0 8.0 49 67-131 624-672 (1143)
307 COG4764 Uncharacterized protei 20.1 93 0.002 26.6 2.5 21 10-30 7-27 (197)
308 PF00218 IGPS: Indole-3-glycer 20.0 2.9E+02 0.0063 25.7 6.1 23 111-133 145-167 (254)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=8e-30 Score=240.86 Aligned_cols=262 Identities=26% Similarity=0.419 Sum_probs=182.3
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcc-cCCC-CCChhhHHHHHHHHHHH
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQ-QSPG-VYNEPVFQGLDFVISEA 120 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~-~~~g-~~~~~~l~~ld~~l~~a 120 (394)
+|+++.++|+|.+|... ...+++|+.|+++|+|+||+++.. ..++ +.|+ .++++.++.||++|++|
T Consensus 4 ~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~~----~~~~~~~~~~~~~~~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVGW----EAYQEPNPGYNYDETYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEES----TSTSTTSTTTSBTHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCCH----HHhcCCCCCccccHHHHHHHHHHHHHH
Confidence 79999999999886532 268999999999999999998753 3344 4555 58999999999999999
Q ss_pred HHcCCEEEEecCCC--CCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeE
Q 016140 121 RKYGIRLILSLSNN--YHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMA 198 (394)
Q Consensus 121 ~~~Gi~vii~l~~~--~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~ 198 (394)
.++||+|||++|.. |... ...+...+...+.+.++|+.+++| ||++|.|++
T Consensus 72 ~~~gi~vild~h~~~~w~~~-------------------~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~ 124 (281)
T PF00150_consen 72 QAYGIYVILDLHNAPGWANG-------------------GDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVG 124 (281)
T ss_dssp HHTT-EEEEEEEESTTCSSS-------------------TSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEE
T ss_pred HhCCCeEEEEeccCcccccc-------------------ccccccchhhHHHHHhhhhhhccc--------cCCCCcEEE
Confidence 99999999999974 2110 111122345677888999999999 999999999
Q ss_pred EEeccCCccCCCC------CchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhh-cCCC
Q 016140 199 WELINEARCQADY------SGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISN-NMIK 271 (394)
Q Consensus 199 wel~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~-~~~~ 271 (394)
|||+|||...... ..+.+.+|+++++++||+.+|+++|+++..++..... . ..... ....
T Consensus 125 ~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~------------~-~~~~~P~~~~ 191 (281)
T PF00150_consen 125 WELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGADPD------------G-AAADNPNDAD 191 (281)
T ss_dssp EESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTBHH------------H-HHHHSTTTTT
T ss_pred EEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccccc------------h-hhhcCccccc
Confidence 9999999986432 1356789999999999999999999998644422100 0 00000 1134
Q ss_pred CccEEeeecCCCCCCCC--CC--hhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHH
Q 016140 272 EIDFTTIHAYPDQWLPG--KN--DYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNI 347 (394)
Q Consensus 272 ~~D~~s~H~Y~~~w~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~ 347 (394)
..+++++|.|.. +... .. ...........+......+.+ .++|++|||||....++. ...++...+++.+
T Consensus 192 ~~~~~~~H~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~~ 265 (281)
T PF00150_consen 192 NNDVYSFHFYDP-YDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDYL 265 (281)
T ss_dssp TSEEEEEEEETT-TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHHH
T ss_pred CceeEEeeEeCC-CCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHHH
Confidence 677999999984 3211 10 111122334455555556655 799999999999865421 2223333334333
Q ss_pred HHHHhcCCccccccccccccc
Q 016140 348 YNLARNGGAIGGGMVWQLMAE 368 (394)
Q Consensus 348 ~~~~~~~~~~~G~~~W~~~~~ 368 (394)
.+ . .+|+++|+++++
T Consensus 266 ~~----~--~~g~~~W~~~~~ 280 (281)
T PF00150_consen 266 EQ----N--GIGWIYWSWKPN 280 (281)
T ss_dssp HH----T--TCEEEECEESSS
T ss_pred HH----C--CCeEEEEecCCC
Confidence 22 1 589999999875
No 2
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.95 E-value=4.3e-25 Score=229.89 Aligned_cols=290 Identities=18% Similarity=0.286 Sum_probs=192.2
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCC
Q 016140 29 QAGF--VQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYN 106 (394)
Q Consensus 29 ~~~~--v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~ 106 (394)
..|| |+++++.|.+||+|++++|+|.+........+.+.+.+.+||+.||++|+|+||+.++.. +
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~-------------~ 338 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPY-------------S 338 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCC-------------C
Confidence 4555 677888999999999999999765543333345778899999999999999999954311 1
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEEecCCC--CCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccc
Q 016140 107 EPVFQGLDFVISEARKYGIRLILSLSNN--YHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINT 184 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~Gi~vii~l~~~--~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~ 184 (394)
+ +++++|+++||+|+-++... ....+. ..+ +. .. +...-.....+|+..+.+.+.++.+++|
T Consensus 339 ~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~-~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~mv~r--- 402 (604)
T PRK10150 339 E-------EMLDLADRHGIVVIDETPAVGLNLSFGA-GLE--AG--NK-PKETYSEEAVNGETQQAHLQAIRELIAR--- 402 (604)
T ss_pred H-------HHHHHHHhcCcEEEEecccccccccccc-ccc--cc--cc-ccccccccccchhHHHHHHHHHHHHHHh---
Confidence 1 56899999999999887421 000110 000 00 00 0000011123577888899999999999
Q ss_pred cccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccc
Q 016140 185 ITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDF 264 (394)
Q Consensus 185 ~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~ 264 (394)
++|||+|++|.++||+... .+....+++++.+.+|++||+|+|+.+..... . +.
T Consensus 403 -----~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~---~-------~~------- 456 (604)
T PRK10150 403 -----DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVNVMFA---T-------PD------- 456 (604)
T ss_pred -----ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEecccC---C-------cc-------
Confidence 9999999999999998653 23467889999999999999999998653111 0 00
Q ss_pred hhhcCCCCccEEeeecCCCCCCC-CCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC-------CCCCChHHH
Q 016140 265 ISNNMIKEIDFTTIHAYPDQWLP-GKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSK-------EAGFSINVR 336 (394)
Q Consensus 265 ~~~~~~~~~D~~s~H~Y~~~w~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~-------~~~~~~~~~ 336 (394)
.....+.+|++++|.|+. |.. ..+... ...++...+....+..+||++++|||..+. ...++++.|
T Consensus 457 -~~~~~~~~Dv~~~N~Y~~-wy~~~~~~~~----~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q 530 (604)
T PRK10150 457 -TDTVSDLVDVLCLNRYYG-WYVDSGDLET----AEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQ 530 (604)
T ss_pred -cccccCcccEEEEcccce-ecCCCCCHHH----HHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHH
Confidence 011245689999999976 432 122211 122222222222222489999999996542 234578999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccccc----cCCCCC-CCCcEEEcCC
Q 016140 337 DSFLNTIYMNIYNLARNGGAIGGGMVWQLMA----EGMQPY-FDGYEIVLSQ 383 (394)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~----~g~~~w-~~g~~~~~~~ 383 (394)
..+++..++.+.+. ..++|.++|++.+ .|...+ .+..||+..+
T Consensus 531 ~~~~~~~~~~~~~~----p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~d 578 (604)
T PRK10150 531 CAFLDMYHRVFDRV----PAVVGEQVWNFADFATSQGILRVGGNKKGIFTRD 578 (604)
T ss_pred HHHHHHHHHHHhcC----CceEEEEEEeeeccCCCCCCcccCCCcceeEcCC
Confidence 99999877765443 2489999999998 332222 3567787754
No 3
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2e-26 Score=219.88 Aligned_cols=278 Identities=21% Similarity=0.342 Sum_probs=201.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCCh-hhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNE-PVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~-~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
.+++++|++.++.+|++++|+|+.+ |. +.....|..+. ..+.+++.+++.|.+.+|+|++++.+.|.++||.+.+.
T Consensus 25 ~~ei~~dle~a~~vg~k~lR~fiLD-gE--dc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~I 101 (587)
T COG3934 25 NREIKADLEPAGFVGVKDLRLFILD-GE--DCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRI 101 (587)
T ss_pred hhhhhcccccccCccceeEEEEEec-Cc--chhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEe
Confidence 4689999999999999999999653 21 12223343333 34899999999999999999999999999999998888
Q ss_pred HHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHH
Q 016140 146 NWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMAS 225 (394)
Q Consensus 146 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~ 225 (394)
.|.. . +++.+++.|+..+..++++++.+|+. ||.+|+|++|.+-|||-+..+.+.+.+..|..+|..
T Consensus 102 pwag---~--~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 102 PWAG---E--QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYA 168 (587)
T ss_pred ecCC---C--CCccccccchhhcccHHHHHHHHhhh--------hccChHHHHHHhcCCccccccCChhHHHHHHHHHHH
Confidence 8852 2 35667888999999999999999998 999999999999999887666667889999999999
Q ss_pred HhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHH
Q 016140 226 YVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASH 305 (394)
Q Consensus 226 ~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~ 305 (394)
.||.+||+|+|++|..++. . ++ +.+......+|+-+.|.|+. |... + ..+.-..|...+
T Consensus 169 yiK~ldd~hlvsvGD~~sp---~-------~~------~~pyN~r~~vDya~~hLY~h-yd~s--l--~~r~s~~yg~~~ 227 (587)
T COG3934 169 YIKWLDDGHLVSVGDPASP---W-------PQ------YAPYNARFYVDYAANHLYRH-YDTS--L--VSRVSTVYGKPY 227 (587)
T ss_pred HhhccCCCCeeecCCcCCc---c-------cc------cCCcccceeeccccchhhhh-ccCC--h--hheeeeeecchh
Confidence 9999999999999976541 0 11 11112234688999999984 4321 1 011112334445
Q ss_pred HHHHhhcCC-CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCC---------CCCCC
Q 016140 306 WTDSKTILK-KPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGM---------QPYFD 375 (394)
Q Consensus 306 ~~~~~~~~~-kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~---------~~w~~ 375 (394)
++..+. .+ +|++++|||.+...+. +.+++.+ ++-.+ ++..+ +-|+++||+.+.+. .....
T Consensus 228 l~i~~~-~g~~pV~leefGfsta~g~--e~s~ayf---iw~~l--al~~g--gdGaLiwclsdf~~gsdd~ey~w~p~el 297 (587)
T COG3934 228 LDIPTI-MGWQPVNLEEFGFSTAFGQ--ENSPAYF---IWIRL--ALDTG--GDGALIWCLSDFHLGSDDSEYTWGPMEL 297 (587)
T ss_pred hccchh-cccceeeccccCCcccccc--cccchhh---hhhhh--HHhhc--CCceEEEEecCCccCCCCCCCccccccc
Confidence 555555 56 9999999999988643 2223222 11111 22223 57899999987651 33389
Q ss_pred CcEEEcCCCchHHHHh
Q 016140 376 GYEIVLSQNPSTRSVI 391 (394)
Q Consensus 376 g~~~~~~~~~~~~~~~ 391 (394)
+|+|+.+++|.-..+|
T Consensus 298 ~fgiIradgpek~~a~ 313 (587)
T COG3934 298 EFGIIRADGPEKIDAM 313 (587)
T ss_pred eeeeecCCCchhhhHH
Confidence 9999998887544443
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.89 E-value=1.5e-21 Score=186.51 Aligned_cols=158 Identities=16% Similarity=0.280 Sum_probs=112.1
Q ss_pred EEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHH
Q 016140 33 VQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQG 112 (394)
Q Consensus 33 v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ 112 (394)
|++++++|.+||||++++|+|.+........+.+.+.+++||..||++|+|+||+.+... +
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~-------------~------ 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPP-------------S------ 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------S------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccC-------------c------
Confidence 689999999999999999999653322222234778999999999999999999954321 1
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccC
Q 016140 113 LDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKD 192 (394)
Q Consensus 113 ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~ 192 (394)
.+++++|+++||.|+.++... ..+.... .| .......++...+.+.+.++.+++| ++|
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~--~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~N 119 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLE--GHGSWQD-------FG----NCNYDADDPEFRENAEQELREMVRR--------DRN 119 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-B--SCTSSSS-------TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HTT
T ss_pred -HHHHHHHhhcCCEEEEecccc--ccCcccc-------CC----ccccCCCCHHHHHHHHHHHHHHHHc--------CcC
Confidence 267899999999999987531 0111000 00 0011234678888999999999999 999
Q ss_pred CCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEecc
Q 016140 193 DPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGL 240 (394)
Q Consensus 193 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~ 240 (394)
||+|++|.++||+ ....+++++.+.+|++||+++|+.++
T Consensus 120 HPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 120 HPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp -TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred cCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 9999999999999 24677899999999999999998765
No 5
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.86 E-value=5.2e-20 Score=200.17 Aligned_cols=235 Identities=16% Similarity=0.283 Sum_probs=158.2
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCC
Q 016140 29 QAGF--VQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYN 106 (394)
Q Consensus 29 ~~~~--v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~ 106 (394)
..|| |+++++.|.+||+|++++|+|.+........+.+.+.+++||+.||++|+|+||++++.+ .|
T Consensus 314 ~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~--------~~---- 381 (1021)
T PRK10340 314 RVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPN--------DP---- 381 (1021)
T ss_pred eeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCC--------CH----
Confidence 4455 666788999999999999999754322222234778999999999999999999965422 11
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccc
Q 016140 107 EPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTIT 186 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~ 186 (394)
+++++|+++||+|+-+..-. ..| ... .+ .......+|...+.+.+.+++++.|
T Consensus 382 --------~fydlcDe~GllV~dE~~~e--~~g-~~~-------~~----~~~~~~~~p~~~~~~~~~~~~mV~R----- 434 (1021)
T PRK10340 382 --------RFYELCDIYGLFVMAETDVE--SHG-FAN-------VG----DISRITDDPQWEKVYVDRIVRHIHA----- 434 (1021)
T ss_pred --------HHHHHHHHCCCEEEECCccc--ccC-ccc-------cc----ccccccCCHHHHHHHHHHHHHHHHh-----
Confidence 56899999999999875211 011 000 00 0011234677788888999999999
Q ss_pred cccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchh
Q 016140 187 RIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFIS 266 (394)
Q Consensus 187 ~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~ 266 (394)
++|||+|++|.++||.... .. +++|++.+|+.||.|+|+.....
T Consensus 435 ---drNHPSIi~WslGNE~~~g-----~~----~~~~~~~~k~~DptR~v~~~~~~------------------------ 478 (1021)
T PRK10340 435 ---QKNHPSIIIWSLGNESGYG-----CN----IRAMYHAAKALDDTRLVHYEEDR------------------------ 478 (1021)
T ss_pred ---CCCCCEEEEEECccCcccc-----HH----HHHHHHHHHHhCCCceEEeCCCc------------------------
Confidence 9999999999999998643 12 37899999999999999864210
Q ss_pred hcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 016140 267 NNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMN 346 (394)
Q Consensus 267 ~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~ 346 (394)
.....|+++. +|+.. ..+.++ .....+||++++||+.....+. ....+| ++.
T Consensus 479 --~~~~~Dv~~~-~Y~~~---------------~~~~~~---~~~~~~kP~i~~Ey~hamgn~~---g~~~~y----w~~ 530 (1021)
T PRK10340 479 --DAEVVDVIST-MYTRV---------------ELMNEF---GEYPHPKPRILCEYAHAMGNGP---GGLTEY----QNV 530 (1021)
T ss_pred --Cccccceecc-ccCCH---------------HHHHHH---HhCCCCCcEEEEchHhccCCCC---CCHHHH----HHH
Confidence 1134678885 45421 011111 1111479999999997654321 112344 333
Q ss_pred HHHHHhcCCcccccccccccccCC
Q 016140 347 IYNLARNGGAIGGGMVWQLMAEGM 370 (394)
Q Consensus 347 ~~~~~~~~~~~~G~~~W~~~~~g~ 370 (394)
+.+. ....|.|+|.|.++|.
T Consensus 531 ~~~~----p~l~GgfiW~~~D~~~ 550 (1021)
T PRK10340 531 FYKH----DCIQGHYVWEWCDHGI 550 (1021)
T ss_pred HHhC----CceeEEeeeecCcccc
Confidence 3333 2378999999999754
No 6
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.85 E-value=1.1e-19 Score=197.37 Aligned_cols=239 Identities=16% Similarity=0.251 Sum_probs=155.4
Q ss_pred EEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHH
Q 016140 33 VQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQG 112 (394)
Q Consensus 33 v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ 112 (394)
|++++++|.+||+|++++|+|.+........+.+++.+++||+.||++|+|+||+.++.+ .|
T Consensus 336 iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~--------~p---------- 397 (1027)
T PRK09525 336 VEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPN--------HP---------- 397 (1027)
T ss_pred EEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCC--------CH----------
Confidence 666788999999999999999753322222235789999999999999999999965421 11
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccC
Q 016140 113 LDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKD 192 (394)
Q Consensus 113 ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~ 192 (394)
+++++|+++||+|+-+..-. ..| . ++ ......+++..+.+.+.+++++.| .+|
T Consensus 398 --~fydlcDe~GilV~dE~~~e--~hg-~--~~------------~~~~~~dp~~~~~~~~~~~~mV~R--------drN 450 (1027)
T PRK09525 398 --LWYELCDRYGLYVVDEANIE--THG-M--VP------------MNRLSDDPRWLPAMSERVTRMVQR--------DRN 450 (1027)
T ss_pred --HHHHHHHHcCCEEEEecCcc--ccC-C--cc------------ccCCCCCHHHHHHHHHHHHHHHHh--------CCC
Confidence 56899999999999886310 011 0 00 011234678888899999999999 999
Q ss_pred CCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCC
Q 016140 193 DPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKE 272 (394)
Q Consensus 193 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~ 272 (394)
||+|++|.++||+.... . .++|++.+|+.||.+||+....+. . ...
T Consensus 451 HPSIi~WSlgNE~~~g~-----~----~~~l~~~~k~~DptRpV~y~~~~~-~------------------------~~~ 496 (1027)
T PRK09525 451 HPSIIIWSLGNESGHGA-----N----HDALYRWIKSNDPSRPVQYEGGGA-D------------------------TAA 496 (1027)
T ss_pred CCEEEEEeCccCCCcCh-----h----HHHHHHHHHhhCCCCcEEECCCCC-C------------------------CCc
Confidence 99999999999986431 1 467889999999999998743111 0 012
Q ss_pred ccEEeeecCCCC-CCCCCChhHH-HHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016140 273 IDFTTIHAYPDQ-WLPGKNDYAQ-MQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNL 350 (394)
Q Consensus 273 ~D~~s~H~Y~~~-w~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (394)
.|+++. +|+.. +.. ..... ...+..|. ... ..+||++++|||.....+. ..- ++.++.+.+.
T Consensus 497 ~Dv~~~-my~~~~~~~--~~~~~~~~~~~~~~----~~~--~~~kP~i~cEY~Hamgn~~---g~l----~~yw~~~~~~ 560 (1027)
T PRK09525 497 TDIICP-MYARVDEDQ--PFPAVPKWSIKKWI----SLP--GETRPLILCEYAHAMGNSL---GGF----AKYWQAFRQY 560 (1027)
T ss_pred cccccC-CCCCccccc--cccccchHHHHHHH----hcC--CCCCCEEEEechhcccCcC---ccH----HHHHHHHhcC
Confidence 345443 23321 100 00000 00112221 111 1479999999997665422 222 3334444432
Q ss_pred HhcCCcccccccccccccCC
Q 016140 351 ARNGGAIGGGMVWQLMAEGM 370 (394)
Q Consensus 351 ~~~~~~~~G~~~W~~~~~g~ 370 (394)
....|.|+|.|.++|.
T Consensus 561 ----~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 561 ----PRLQGGFIWDWVDQGL 576 (1027)
T ss_pred ----CCeeEEeeEeccCcce
Confidence 2378999999998875
No 7
>TIGR03356 BGL beta-galactosidase.
Probab=99.83 E-value=7.9e-19 Score=174.74 Aligned_cols=281 Identities=17% Similarity=0.239 Sum_probs=184.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++||+.||++|+|++|+-+ .|++++|+ +|.+|++.++.+|.+|+.|.++||.++++|+. | . .
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-f----d---~ 119 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-W----D---L 119 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-C----C---c
Confidence 357899999999999999999944 48889988 68899999999999999999999999999975 2 1 2
Q ss_pred HHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC--------C---Cc
Q 016140 145 VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD--------Y---SG 213 (394)
Q Consensus 145 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~--------~---~~ 213 (394)
|.|....|. |.+++..+.|.++++.+++| |++. |-.|.++|||+.... + ..
T Consensus 120 P~~l~~~gG--------w~~~~~~~~f~~ya~~~~~~--------~~d~--v~~w~t~NEp~~~~~~~y~~G~~~P~~~~ 181 (427)
T TIGR03356 120 PQALEDRGG--------WLNRDTAEWFAEYAAVVAER--------LGDR--VKHWITLNEPWCSAFLGYGLGVHAPGLRD 181 (427)
T ss_pred cHHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hCCc--CCEEEEecCcceecccchhhccCCCCCcc
Confidence 344332221 67899999999999999999 9994 556899999985321 1 00
Q ss_pred -h-HHH------HHHHHHHHHhhccCCCCEEEecccc--ccCCC-CCCc---------c--C--CCC---C-CC------
Q 016140 214 -K-TLN------NWVQEMASYVKSIDNKHLLEIGLEG--FYGDS-IPDK---------K--Q--FNP---G-YQ------ 259 (394)
Q Consensus 214 -~-~~~------~w~~~~~~~Ir~~dp~~~V~~g~~g--~~~~~-~~~~---------~--~--~n~---~-~~------ 259 (394)
. .++ .-..++++.+|+..|+..|.+..+. .+..+ .+.+ . . .+| | +.
T Consensus 182 ~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~ 261 (427)
T TIGR03356 182 LRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEY 261 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHH
Confidence 1 111 1134567778888887665543221 11110 0000 0 0 001 0 00
Q ss_pred cc--ccch---hhcCCCCccEEeeecCCCCCCCCC-----------Ch-h-HH--HHHHHHHHHHHHHHHhhcCCC-cEE
Q 016140 260 VG--TDFI---SNNMIKEIDFTTIHAYPDQWLPGK-----------ND-Y-AQ--MQFVQKWLASHWTDSKTILKK-PLV 318 (394)
Q Consensus 260 ~g--~~~~---~~~~~~~~D~~s~H~Y~~~w~~~~-----------~~-~-~~--~~~~~~~l~~~~~~~~~~~~k-Pv~ 318 (394)
.+ ..+. .......+||+++++|........ +. + .. .+..+.-|+..++...+.+++ ||+
T Consensus 262 l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ 341 (427)
T TIGR03356 262 LGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIY 341 (427)
T ss_pred hccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEE
Confidence 00 0000 001124569999999964321100 00 0 00 011233455555555444776 799
Q ss_pred EEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCCcE
Q 016140 319 FSEFGKSSKE----AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 319 v~EfG~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g~~ 378 (394)
|+|.|+.... +...++.|..|+++.+..+.++...|-.+.|.++|++.++ .+|.+||.
T Consensus 342 ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~ 403 (427)
T TIGR03356 342 ITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYS 403 (427)
T ss_pred EeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccc
Confidence 9999997432 1234778999999999999998887766889999999999 88877776
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=2.3e-19 Score=176.66 Aligned_cols=271 Identities=19% Similarity=0.272 Sum_probs=148.6
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
++++.+++||+.||+.|+|+||+..+ .|..+||++|+|| |+.||++|+.|.++||+|+|.+... ..
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~--------~~ 72 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA--------AP 72 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT--------TS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc--------cc
Confidence 35689999999999999999998554 3677899999998 8889999999999999999987532 12
Q ss_pred HHHHHH----------cCCCC---CCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC-
Q 016140 145 VNWARA----------AGASV---NSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD- 210 (394)
Q Consensus 145 ~~w~~~----------~g~~~---~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~- 210 (394)
|.|... .|... ....-.+.+|.+++...++++.+++| |+++|+|++|+|.|||....+
T Consensus 73 P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 73 PAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp -HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--
T ss_pred ccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCC
Confidence 456532 11110 01112345788999999999999999 999999999999999976311
Q ss_pred C----------------------------------------------C---------------chHHHHHHHHHHHHhhc
Q 016140 211 Y----------------------------------------------S---------------GKTLNNWVQEMASYVKS 229 (394)
Q Consensus 211 ~----------------------------------------------~---------------~~~~~~w~~~~~~~Ir~ 229 (394)
+ . .+....+++.+.+.||+
T Consensus 145 ~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~ 224 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIRE 224 (374)
T ss_dssp SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 02234556778999999
Q ss_pred cCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCC-CCCCCChhHHHHHHHHHHHHHHHH
Q 016140 230 IDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQ-WLPGKNDYAQMQFVQKWLASHWTD 308 (394)
Q Consensus 230 ~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~-w~~~~~~~~~~~~~~~~l~~~~~~ 308 (394)
.+|+++|++...+.. . .+.|.. .....+|+++.+.||.. ............ +..+..+.
T Consensus 225 ~~p~~~vt~n~~~~~--~------------~~~d~~--~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a----~~~dl~R~ 284 (374)
T PF02449_consen 225 YDPDHPVTTNFMGSW--F------------NGIDYF--KWAKYLDVVSWDSYPDGSFDFYDDDPYSLA----FNHDLMRS 284 (374)
T ss_dssp HSTT-EEE-EE-TT-----------------SS-HH--HHGGGSSSEEEEE-HHHHHTTTT--TTHHH----HHHHHHHH
T ss_pred hCCCceEEeCccccc--c------------CcCCHH--HHHhhCCcceeccccCcccCCCCCCHHHHH----HHHHHHHh
Confidence 999999996542210 0 011222 12457899999999861 000000011111 11222223
Q ss_pred HhhcCCCcEEEEecCCCCCCC-CCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCCcEEEcCCC
Q 016140 309 SKTILKKPLVFSEFGKSSKEA-GFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYEIVLSQN 384 (394)
Q Consensus 309 ~~~~~~kPv~v~EfG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g~~~~~~~~ 384 (394)
.+ .+||++|.|.-...... ......+...++. ..+.++..| ..|.++|+|.+.-.+.=.-.+||+--++
T Consensus 285 ~~--~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~---~~~~~~A~G--a~~i~~~~wr~~~~g~E~~~~g~~~~dg 354 (374)
T PF02449_consen 285 LA--KGKPFWVMEQQPGPVNWRPYNRPPRPGELRL---WSWQAIAHG--ADGILFWQWRQSRFGAEQFHGGLVDHDG 354 (374)
T ss_dssp HT--TT--EEEEEE--S--SSSSS-----TTHHHH---HHHHHHHTT---S-EEEC-SB--SSSTTTTS--SB-TTS
T ss_pred hc--CCCceEeecCCCCCCCCccCCCCCCCCHHHH---HHHHHHHHh--CCeeEeeeccCCCCCchhhhcccCCccC
Confidence 32 69999999996553210 1111111111121 122333444 5689999998643222122377766555
No 9
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.79 E-value=7.3e-18 Score=156.37 Aligned_cols=274 Identities=18% Similarity=0.277 Sum_probs=139.0
Q ss_pred CCCCCCCcEEEeCCeEEE--CCeEEEEEeeecccccccc-----CCCc-chhhHHHHHHHHHHcCCCEEEEccccCCCCC
Q 016140 25 TLPAQAGFVQTRGTQFVL--NGSPFLFNGFNSYWMMNVA-----SQPS-QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYG 96 (394)
Q Consensus 25 ~~~~~~~~v~~~g~~~~~--~G~~~~~~G~N~~~~~~~~-----~~~~-~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~ 96 (394)
++.+..+.|+++|++|.. +|++|+++||. |.+.... .+|. +....++|+..||++|+|+||++..++.
T Consensus 3 ~~~~~~~pI~ikG~kff~~~~g~~F~ikGVa-YQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~--- 78 (314)
T PF03198_consen 3 SAAAAVPPIEIKGNKFFYSKNGTRFFIKGVA-YQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPS--- 78 (314)
T ss_dssp -SSTTS--EEEETTEEEETTT--B--EEEEE-----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TT---
T ss_pred chhccCCCEEEECCEeEECCCCCEEEEeeEE-cccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCC---
Confidence 345678899999999994 89999999999 4454331 2343 6789999999999999999999765321
Q ss_pred CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCH--HHHHHHHHH
Q 016140 97 ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNA--IVKGYYKNH 174 (394)
Q Consensus 97 ~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~--~~~~~~~~~ 174 (394)
..-|..+.+..+.||||++||...- ++.+ -.+| ..-..+.+.
T Consensus 79 --------------~nHd~CM~~~~~aGIYvi~Dl~~p~---~sI~-------------------r~~P~~sw~~~l~~~ 122 (314)
T PF03198_consen 79 --------------KNHDECMSAFADAGIYVILDLNTPN---GSIN-------------------RSDPAPSWNTDLLDR 122 (314)
T ss_dssp --------------S--HHHHHHHHHTT-EEEEES-BTT---BS---------------------TTS------HHHHHH
T ss_pred --------------CCHHHHHHHHHhCCCEEEEecCCCC---cccc-------------------CCCCcCCCCHHHHHH
Confidence 2457889999999999999996531 1110 0122 233344555
Q ss_pred HHHHHhcccccccccccCCCcEeEEEeccCCccCCCC--CchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCc-
Q 016140 175 VKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY--SGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDK- 251 (394)
Q Consensus 175 ~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~--~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~- 251 (394)
...++.. ++..|+++++-++||....... ..+-+++.+++|-+.|++... |.|.||.+..........
T Consensus 123 ~~~vid~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaaD~~~~r~~~ 193 (314)
T PF03198_consen 123 YFAVIDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAADDAEIRQDL 193 (314)
T ss_dssp HHHHHHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE---TTTHHHH
T ss_pred HHHHHHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEccCChhHHHHH
Confidence 6667776 8999999999999999764321 123456778888888888654 445665432110000000
Q ss_pred -cCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCC
Q 016140 252 -KQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAG 330 (394)
Q Consensus 252 -~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~ 330 (394)
.. +.+|. ....+||+.++.|. |...+++.. .. ..+..+.++. +..|++++|||+....+
T Consensus 194 a~Y----l~Cg~------~~~~iDf~g~N~Y~--WCg~Stf~~-----SG-y~~l~~~f~~-y~vPvffSEyGCn~~~p- 253 (314)
T PF03198_consen 194 ANY----LNCGD------DDERIDFFGLNSYE--WCGDSTFET-----SG-YDRLTKEFSN-YSVPVFFSEYGCNTVTP- 253 (314)
T ss_dssp HHH----TTBTT-----------S-EEEEE------SS--HHH-----HS-HHHHHHHHTT--SS-EEEEEE---SSSS-
T ss_pred HHH----hcCCC------cccccceeeeccce--ecCCCcccc-----cc-HHHHHHHhhC-CCCCeEEcccCCCCCCC-
Confidence 00 11221 12478999999996 776555432 11 2344455665 89999999999987642
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCCcEEEc
Q 016140 331 FSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYEIVL 381 (394)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g~~~~~ 381 (394)
+-+.++ .+|+..-... .-.|.++..|..+ ..+||+|-
T Consensus 254 -------R~f~ev-~aly~~~Mt~-v~SGGivYEy~~e-----~n~yGlV~ 290 (314)
T PF03198_consen 254 -------RTFTEV-PALYSPEMTD-VWSGGIVYEYFQE-----ANNYGLVE 290 (314)
T ss_dssp ----------THH-HHHTSHHHHT-TEEEEEES-SB-------SSS--SEE
T ss_pred -------ccchHh-HHhhCccchh-heeceEEEEEecc-----CCceEEEE
Confidence 122332 2333322222 3578899888877 56799765
No 10
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.77 E-value=4.1e-17 Score=164.17 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=186.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
....+++|++.||++|+|+.|+=+ .|++++|. +|.+|++.++..+++|+.+.++||..+++|+. |+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~d------- 138 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSI----AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FD------- 138 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEec----chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC-------
Confidence 457899999999999999999932 58889886 45689999999999999999999999999974 42
Q ss_pred hHHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC----------CC
Q 016140 144 YVNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD----------YS 212 (394)
Q Consensus 144 y~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~----------~~ 212 (394)
.|.|.... |. |.+++..+.|.++.+.+++| |++. |--|..+|||+.... +.
T Consensus 139 lP~~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~~~~~~g~~~~~ 200 (478)
T PRK09593 139 CPMHLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKGL--VKYWLTFNEINMILHAPFMGAGLYFEE 200 (478)
T ss_pred CCHHHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEeecchhhhhcccccccCcccCC
Confidence 24454321 22 78999999999999999999 9984 667999999985321 01
Q ss_pred c--h---HHHHH------HHHHHHHhhccCCCCEEEeccccc--cCCC-CCCc------------cCCCCCCCcc-----
Q 016140 213 G--K---TLNNW------VQEMASYVKSIDNKHLLEIGLEGF--YGDS-IPDK------------KQFNPGYQVG----- 261 (394)
Q Consensus 213 ~--~---~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g~--~~~~-~~~~------------~~~n~~~~~g----- 261 (394)
+ . .+++. +..+++.+|+..|+..|.+-.+.. +..+ .+.+ ...+|. ..|
T Consensus 201 g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~-~~G~YP~~ 279 (478)
T PRK09593 201 GENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQ-ARGEYPNY 279 (478)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhh-hCCCccHH
Confidence 1 0 11211 234567788877776555433221 1110 0000 000110 000
Q ss_pred -----------ccchh----hcCCCCccEEeeecCCCCCCCCCC------h---------h---HH---HHHHHHHHHHH
Q 016140 262 -----------TDFIS----NNMIKEIDFTTIHAYPDQWLPGKN------D---------Y---AQ---MQFVQKWLASH 305 (394)
Q Consensus 262 -----------~~~~~----~~~~~~~D~~s~H~Y~~~w~~~~~------~---------~---~~---~~~~~~~l~~~ 305 (394)
..+.. ......+||+++++|-.......+ . + .. .+..+.-|...
T Consensus 280 ~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~ 359 (478)
T PRK09593 280 AKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRIT 359 (478)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHH
Confidence 00000 011245799999999543321000 0 0 00 01233445555
Q ss_pred HHHHhhcCCCcEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHHh-cCCcccccccccccccCCCCCCCC---
Q 016140 306 WTDSKTILKKPLVFSEFGKSSKE-----AGFSINVRDSFLNTIYMNIYNLAR-NGGAIGGGMVWQLMAEGMQPYFDG--- 376 (394)
Q Consensus 306 ~~~~~~~~~kPv~v~EfG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~w~~g--- 376 (394)
++...+.+++||+|+|.|+.... +...++.|..|++..+..+.++.. .|-.+.|.++||+.++ .+|..|
T Consensus 360 l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~G~y~ 437 (478)
T PRK09593 360 LNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGTGEMK 437 (478)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccCCCcc
Confidence 55554447899999999997432 224577899999999999998884 6756889999999999 889888
Q ss_pred --cEEEc
Q 016140 377 --YEIVL 381 (394)
Q Consensus 377 --~~~~~ 381 (394)
||+++
T Consensus 438 ~RfGl~~ 444 (478)
T PRK09593 438 KRYGFIY 444 (478)
T ss_pred CeeceEE
Confidence 66655
No 11
>PLN02998 beta-glucosidase
Probab=99.77 E-value=3e-17 Score=165.46 Aligned_cols=280 Identities=18% Similarity=0.208 Sum_probs=182.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++|++.||++|+|+.|+-+ .|++++|+ .|.+|++.++..+++|+.+.++||..+++|+. |+ .
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~d-------l 147 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSI----SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FD-------L 147 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeec----cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------C
Confidence 467899999999999999999932 58888885 57799999999999999999999999999974 42 2
Q ss_pred HHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC--------CCch-
Q 016140 145 VNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD--------YSGK- 214 (394)
Q Consensus 145 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~--------~~~~- 214 (394)
|.|.... |. |.+++..+.|.++.+.+++| |++. |--|-.+|||+.... +.+.
T Consensus 148 P~~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 209 (497)
T PLN02998 148 PQALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGDR--VSHWTTINEVNVFALGGYDQGITPPARC 209 (497)
T ss_pred CHHHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEccCcchhhhcchhhcccCCCcc
Confidence 4454431 22 78899999999999999999 9994 667999999985421 0000
Q ss_pred ----------------HHHHH------HHHHHHHhhcc---CCCCEEEecccc--ccCCC-CCCc---------c----C
Q 016140 215 ----------------TLNNW------VQEMASYVKSI---DNKHLLEIGLEG--FYGDS-IPDK---------K----Q 253 (394)
Q Consensus 215 ----------------~~~~w------~~~~~~~Ir~~---dp~~~V~~g~~g--~~~~~-~~~~---------~----~ 253 (394)
.++.- ..++++.+|+. +++..|.+-.+. .+..+ .+.+ . .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f 289 (497)
T PLN02998 210 SPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWI 289 (497)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhh
Confidence 11221 23445667765 555444432221 11110 0000 0 0
Q ss_pred CCCCCCcc-------------c-cch---hhcCCCCccEEeeecCCCCCCCC-C-C--h--h---------------HH-
Q 016140 254 FNPGYQVG-------------T-DFI---SNNMIKEIDFTTIHAYPDQWLPG-K-N--D--Y---------------AQ- 294 (394)
Q Consensus 254 ~n~~~~~g-------------~-~~~---~~~~~~~~D~~s~H~Y~~~w~~~-~-~--~--~---------------~~- 294 (394)
..|- ..| . .+. .......+||+++++|....... . + . . ..
T Consensus 290 ~dp~-~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (497)
T PLN02998 290 LHPL-VFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSI 368 (497)
T ss_pred hhHH-hCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCC
Confidence 0010 000 0 000 00112457999999995432210 0 0 0 0 00
Q ss_pred ---HHHHHHHHHHHHHHHhhcCCC-cEEEEecCCCCCC-CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccC
Q 016140 295 ---MQFVQKWLASHWTDSKTILKK-PLVFSEFGKSSKE-AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEG 369 (394)
Q Consensus 295 ---~~~~~~~l~~~~~~~~~~~~k-Pv~v~EfG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g 369 (394)
.+..+.-|...+...++.+++ ||+|+|.|+.... +...++.|.+|+++.+..+.++...|-.+.|.++||+.|+
T Consensus 369 ~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dn- 447 (497)
T PLN02998 369 ENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDV- 447 (497)
T ss_pred CCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh-
Confidence 011233355555555444777 6999999987542 3356789999999999999999887766899999999999
Q ss_pred CCCCCCCcE
Q 016140 370 MQPYFDGYE 378 (394)
Q Consensus 370 ~~~w~~g~~ 378 (394)
.+|..||.
T Consensus 448 -fEW~~Gy~ 455 (497)
T PLN02998 448 -FELFGGYE 455 (497)
T ss_pred -hchhcccc
Confidence 78877766
No 12
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.76 E-value=9.6e-17 Score=161.44 Aligned_cols=280 Identities=17% Similarity=0.141 Sum_probs=183.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
...++++|++.||++|+|+.|+-+ .|+++.|. .+.+|++.++..+++|+.+.++||..+++|+. |+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~d------- 132 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSI----AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FE------- 132 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEecc----chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------
Confidence 457899999999999999999932 58888886 44689999999999999999999999999974 42
Q ss_pred hHHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCC-----------C-
Q 016140 144 YVNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQA-----------D- 210 (394)
Q Consensus 144 y~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~-----------~- 210 (394)
.|.|.... |. |.+++..+.|.++.+.+++| |++. |--|..+|||+... .
T Consensus 133 lP~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~~~~~~g 194 (476)
T PRK09589 133 MPYHLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKDK--VKYWMTFNEINNQANFSEDFAPFTNSG 194 (476)
T ss_pred CCHHHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcCC--CCEEEEecchhhhhccccccCCccccc
Confidence 23444322 22 78999999999999999999 9984 66799999998431 0
Q ss_pred ---CCch-----HHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCC-CCCc-------cC-----CCCCCCcc
Q 016140 211 ---YSGK-----TLNNW------VQEMASYVKSIDNKHLLEIGLEG--FYGDS-IPDK-------KQ-----FNPGYQVG 261 (394)
Q Consensus 211 ---~~~~-----~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g--~~~~~-~~~~-------~~-----~n~~~~~g 261 (394)
+.+. .++.. ..++++.+|+..|+..|.+..+. .+..+ .+.+ .. ..|. ..|
T Consensus 195 ~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~-~~G 273 (476)
T PRK09589 195 ILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVH-VRG 273 (476)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecce-eCC
Confidence 0110 11211 23456677887776555432211 11111 0000 00 0110 000
Q ss_pred --------------c--cchh----hcCCCCccEEeeecCCCCCCCC---CC---h------------hHH---HHHHHH
Q 016140 262 --------------T--DFIS----NNMIKEIDFTTIHAYPDQWLPG---KN---D------------YAQ---MQFVQK 300 (394)
Q Consensus 262 --------------~--~~~~----~~~~~~~D~~s~H~Y~~~w~~~---~~---~------------~~~---~~~~~~ 300 (394)
. .+.. .+....+||+++++|....... .+ . +.. .+..+.
T Consensus 274 ~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~ 353 (476)
T PRK09589 274 YYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPA 353 (476)
T ss_pred CCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcH
Confidence 0 0100 0113457999999996533210 00 0 000 012234
Q ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHH-hcCCcccccccccccccCCCCCC
Q 016140 301 WLASHWTDSKTILKKPLVFSEFGKSSKE-----AGFSINVRDSFLNTIYMNIYNLA-RNGGAIGGGMVWQLMAEGMQPYF 374 (394)
Q Consensus 301 ~l~~~~~~~~~~~~kPv~v~EfG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~g~~~w~ 374 (394)
-|...++...+.+++||+|+|-|+.... +...++.|..|+++.+..+.++. ..|-.+.|.++||+.++ .+|.
T Consensus 354 Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn--~Ew~ 431 (476)
T PRK09589 354 GLRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL--VSAG 431 (476)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--cccc
Confidence 4555555555558899999999997532 22457789999999999999888 67766899999999999 8888
Q ss_pred CC-cE
Q 016140 375 DG-YE 378 (394)
Q Consensus 375 ~g-~~ 378 (394)
.| |+
T Consensus 432 ~G~y~ 436 (476)
T PRK09589 432 TGEMK 436 (476)
T ss_pred CCccc
Confidence 88 44
No 13
>PLN02814 beta-glucosidase
Probab=99.76 E-value=8.4e-17 Score=162.44 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=182.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++|++.||++|+|+.|+-+ .|++++|+ +|.+|++.++..+++++.|.++||..+++|+. |+ .
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSI----sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~d-------l 142 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSI----SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YD-------L 142 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEec----cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------C
Confidence 468899999999999999999932 58889885 57899999999999999999999999999974 42 2
Q ss_pred HHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC--------C---C
Q 016140 145 VNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD--------Y---S 212 (394)
Q Consensus 145 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~--------~---~ 212 (394)
|.|.... |. |.+++..+.|.++.+.+++| |++. |--|..+|||+.... + +
T Consensus 143 P~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~pg~~~ 204 (504)
T PLN02814 143 PQSLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGED--VKLWTTINEATIFAIGSYGQGIRYGHCS 204 (504)
T ss_pred CHHHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCCc--CCEEEeccccchhhhcccccCcCCCCCC
Confidence 4454431 32 78999999999999999999 9984 667999999985421 0 0
Q ss_pred -------------chHHHHH------HHHHHHHhhcc---CCCCEEEecccc--ccCCCC-CCc---------c----CC
Q 016140 213 -------------GKTLNNW------VQEMASYVKSI---DNKHLLEIGLEG--FYGDSI-PDK---------K----QF 254 (394)
Q Consensus 213 -------------~~~~~~w------~~~~~~~Ir~~---dp~~~V~~g~~g--~~~~~~-~~~---------~----~~ 254 (394)
.+.++.- ...+++.+|+. .|+..|.+-.+. .+..+. +.+ . ..
T Consensus 205 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~ 284 (504)
T PLN02814 205 PNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWML 284 (504)
T ss_pred cccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 0111221 23456667764 555444432221 111110 000 0 00
Q ss_pred CCCCCcc-------------c-cchh---hcCCCCccEEeeecCCCCCCCC---C--------Ch------------hHH
Q 016140 255 NPGYQVG-------------T-DFIS---NNMIKEIDFTTIHAYPDQWLPG---K--------ND------------YAQ 294 (394)
Q Consensus 255 n~~~~~g-------------~-~~~~---~~~~~~~D~~s~H~Y~~~w~~~---~--------~~------------~~~ 294 (394)
+|-+ .| . .+.. ......+||+++++|....... . .. +..
T Consensus 285 dp~~-~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (504)
T PLN02814 285 KPLV-FGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSS 363 (504)
T ss_pred HHHh-CCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcC
Confidence 0100 00 0 0000 0112457999999995422210 0 00 000
Q ss_pred ---HHHHHHHHHHHHHHHhhcCCC-cEEEEecCCCCCC-CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccC
Q 016140 295 ---MQFVQKWLASHWTDSKTILKK-PLVFSEFGKSSKE-AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEG 369 (394)
Q Consensus 295 ---~~~~~~~l~~~~~~~~~~~~k-Pv~v~EfG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g 369 (394)
.+..+.-|...++..++.+++ ||+|+|.|+.... +...++.|..|+++.+..+.++...|-.+.|+++|++.|+
T Consensus 364 ~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDn- 442 (504)
T PLN02814 364 FFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDL- 442 (504)
T ss_pred CCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh-
Confidence 011233345555554444666 7999999997443 3346789999999999999998887766899999999999
Q ss_pred CCCCCCCcE
Q 016140 370 MQPYFDGYE 378 (394)
Q Consensus 370 ~~~w~~g~~ 378 (394)
.+|..||+
T Consensus 443 -fEW~~Gy~ 450 (504)
T PLN02814 443 -YELLGGYT 450 (504)
T ss_pred -hchhcccc
Confidence 88877776
No 14
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.76 E-value=1.4e-16 Score=159.98 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=184.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++|++.||++|+|+.|+=+ .|++++|. +|.+|++.++..+++++.+.++||..+++|+. |+ .
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSI----sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 118 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISI----AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-FD-------T 118 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEec----chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-CC-------C
Confidence 457899999999999999999932 58888885 57899999999999999999999999999974 32 2
Q ss_pred HHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC---------CCc--
Q 016140 145 VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD---------YSG-- 213 (394)
Q Consensus 145 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~---------~~~-- 213 (394)
|.|....|. |.+++..+.|.++.+.++++ |++ |--|..+|||+.... +..
T Consensus 119 P~~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 179 (467)
T TIGR01233 119 PEALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKY 179 (467)
T ss_pred cHHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccc
Confidence 445543332 78999999999999999999 984 667999999986421 110
Q ss_pred ---hHHHHH------HHHHHHHhhccCCCCEEEeccccc--cCCC--CCCc---------c----CCCCCCCcc------
Q 016140 214 ---KTLNNW------VQEMASYVKSIDNKHLLEIGLEGF--YGDS--IPDK---------K----QFNPGYQVG------ 261 (394)
Q Consensus 214 ---~~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g~--~~~~--~~~~---------~----~~n~~~~~g------ 261 (394)
..++.. ..+++..+|+.+++..|.+-.+.. +..+ .+.+ . ..+|. ..|
T Consensus 180 ~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~-~~G~Yp~~~ 258 (467)
T TIGR01233 180 DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDAT-YLGHYSDKT 258 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchh-hCCCCCHHH
Confidence 111222 245677788888876665433221 1111 0000 0 00110 001
Q ss_pred --------------ccchh----hcC--CCCccEEeeecCCCCCCCC-----------C-----------------Ch--
Q 016140 262 --------------TDFIS----NNM--IKEIDFTTIHAYPDQWLPG-----------K-----------------ND-- 291 (394)
Q Consensus 262 --------------~~~~~----~~~--~~~~D~~s~H~Y~~~w~~~-----------~-----------------~~-- 291 (394)
..+.. ... ...+||+++++|....... . ..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (467)
T TIGR01233 259 MEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDY 338 (467)
T ss_pred HHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCC
Confidence 00000 000 2356999999995322110 0 00
Q ss_pred -h-HH--HHHHHHHHHHHHHHHhhcCCC--cEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 016140 292 -Y-AQ--MQFVQKWLASHWTDSKTILKK--PLVFSEFGKSSKE----AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGM 361 (394)
Q Consensus 292 -~-~~--~~~~~~~l~~~~~~~~~~~~k--Pv~v~EfG~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 361 (394)
+ .. .+..+.-|...++..++.+++ ||+|+|.|+.... +...++.|.+|+++.+..+.++...|-.+.|.+
T Consensus 339 ~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~ 418 (467)
T TIGR01233 339 VPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYF 418 (467)
T ss_pred CCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 00 011233455555555444665 7999999997532 224578899999999999999888776689999
Q ss_pred cccccccCCCCCCCCcE
Q 016140 362 VWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 362 ~W~~~~~g~~~w~~g~~ 378 (394)
+||+.|+ .+|..||.
T Consensus 419 ~WSl~Dn--~Ew~~Gy~ 433 (467)
T TIGR01233 419 IWSLMDV--FSWSNGYE 433 (467)
T ss_pred eccchhh--hchhcccc
Confidence 9999999 88877766
No 15
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.76 E-value=1.2e-16 Score=160.58 Aligned_cols=279 Identities=18% Similarity=0.184 Sum_probs=182.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
....+++|++.||++|+|+.|+-+ .|+++.|. .+.+|++.++..+++|+.+.++||.++++|+. |+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-~d------- 134 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH-FE------- 134 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecc----cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------
Confidence 346899999999999999999933 48888885 45689999999999999999999999999974 32
Q ss_pred hHHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccC-----C-----C--
Q 016140 144 YVNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQ-----A-----D-- 210 (394)
Q Consensus 144 y~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~-----~-----~-- 210 (394)
.|.|.... |. |.+++..+.|.++++.+++| |++. |--|..+|||+.. . .
T Consensus 135 lP~~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~gy~~~g 196 (477)
T PRK15014 135 MPLHLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKHK--VKYWMTFNEINNQRNWRAPLFGYCCSG 196 (477)
T ss_pred CCHHHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEEecCcccccccccccccccccc
Confidence 23444321 22 78899999999999999999 9995 5679999999742 1 0
Q ss_pred ---CCc-h----HHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCC-CCCc-----------c-CCCCC----
Q 016140 211 ---YSG-K----TLNNW------VQEMASYVKSIDNKHLLEIGLEG--FYGDS-IPDK-----------K-QFNPG---- 257 (394)
Q Consensus 211 ---~~~-~----~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g--~~~~~-~~~~-----------~-~~n~~---- 257 (394)
+.. . .++.. ..++++.+|+..|+..|.+..+. .+..+ .+.+ . ...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~ 276 (477)
T PRK15014 197 VVYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY 276 (477)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCC
Confidence 111 0 11211 23456778887777665543322 11111 0000 0 00110
Q ss_pred CC---------cc--ccch----hhcCCCCccEEeeecCCCCCCCC---------------CCh--hHH---HHHHHHHH
Q 016140 258 YQ---------VG--TDFI----SNNMIKEIDFTTIHAYPDQWLPG---------------KND--YAQ---MQFVQKWL 302 (394)
Q Consensus 258 ~~---------~g--~~~~----~~~~~~~~D~~s~H~Y~~~w~~~---------------~~~--~~~---~~~~~~~l 302 (394)
|. .+ ..+. .......+||+++++|....... .+. ... .+..+.-|
T Consensus 277 YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl 356 (477)
T PRK15014 277 YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGL 356 (477)
T ss_pred CCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHH
Confidence 00 00 0000 00113457999999995322110 000 000 11233445
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHHh-cCCcccccccccccccCCCCCCCC
Q 016140 303 ASHWTDSKTILKKPLVFSEFGKSSKE-----AGFSINVRDSFLNTIYMNIYNLAR-NGGAIGGGMVWQLMAEGMQPYFDG 376 (394)
Q Consensus 303 ~~~~~~~~~~~~kPv~v~EfG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~w~~g 376 (394)
...++..++.+++||+|+|-|+.... +...+..|..|+++.+..+.++.. .|-.+.|.++||+.++ .+|..|
T Consensus 357 ~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--fEw~~G 434 (477)
T PRK15014 357 RYALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--VSFTTG 434 (477)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hcccCC
Confidence 55555555558899999999998532 224578899999999999999885 7766899999999999 888888
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.75 E-value=7.6e-17 Score=162.32 Aligned_cols=280 Identities=15% Similarity=0.188 Sum_probs=181.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++|++.||++|+|+.|+-+ .|+++.|. .|.+|++.++..+++|+.+.++||..+++|+. |+ .
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 119 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISI----AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-FD-------T 119 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeec----cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------C
Confidence 457899999999999999999932 58888885 46799999999999999999999999999974 42 2
Q ss_pred HHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC---------C--Cc
Q 016140 145 VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD---------Y--SG 213 (394)
Q Consensus 145 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~---------~--~~ 213 (394)
|.|....|. |.+++..+.|.++.+.+++| |++ |--|..+|||+.... + ..
T Consensus 120 P~~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~ 180 (469)
T PRK13511 120 PEALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKY 180 (469)
T ss_pred cHHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCc
Confidence 445543332 78999999999999999999 998 667999999985431 1 11
Q ss_pred ---hHHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCC--CCCc---------c----CCCCC----CCc---
Q 016140 214 ---KTLNNW------VQEMASYVKSIDNKHLLEIGLEG--FYGDS--IPDK---------K----QFNPG----YQV--- 260 (394)
Q Consensus 214 ---~~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g--~~~~~--~~~~---------~----~~n~~----~~~--- 260 (394)
..++.. ..++++.+|+..++..|.+-.+. ++..+ .+.+ . ..+|- |..
T Consensus 181 ~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 260 (469)
T PRK13511 181 DLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETM 260 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111221 23456678887766555443221 11111 0100 0 00110 000
Q ss_pred ----------cc--cchh----hcCC--CCccEEeeecCCCCCCCC------------C-----------------C-h-
Q 016140 261 ----------GT--DFIS----NNMI--KEIDFTTIHAYPDQWLPG------------K-----------------N-D- 291 (394)
Q Consensus 261 ----------g~--~~~~----~~~~--~~~D~~s~H~Y~~~w~~~------------~-----------------~-~- 291 (394)
+. .+.. .... ..+||+++++|....... . . .
T Consensus 261 ~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (469)
T PRK13511 261 EGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDV 340 (469)
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCC
Confidence 00 0000 0001 247999999995422110 0 0 0
Q ss_pred h-HHH--HHHHHHHHHHHHHHhhcCCC--cEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 016140 292 Y-AQM--QFVQKWLASHWTDSKTILKK--PLVFSEFGKSSKE-----AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGM 361 (394)
Q Consensus 292 ~-~~~--~~~~~~l~~~~~~~~~~~~k--Pv~v~EfG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 361 (394)
+ ... +..+.-|...++..++.++. ||+|+|.|+.... +...+..|..|+++.+..+.++...|-.+.|.+
T Consensus 341 ~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~ 420 (469)
T PRK13511 341 PTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYF 420 (469)
T ss_pred CcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 000 11122344444444443654 7999999997432 124567899999999999999888776689999
Q ss_pred cccccccCCCCCCCCcE
Q 016140 362 VWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 362 ~W~~~~~g~~~w~~g~~ 378 (394)
+|++.|+ .+|.+||+
T Consensus 421 ~WSl~Dn--fEW~~Gy~ 435 (469)
T PRK13511 421 IWSLMDV--FSWSNGYE 435 (469)
T ss_pred ecccccc--cchhcCcc
Confidence 9999999 88877776
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.75 E-value=1.3e-16 Score=160.21 Aligned_cols=283 Identities=17% Similarity=0.212 Sum_probs=185.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
...++++|++.|+++|+|+.|+-+ .|+++.|. ++.+|++.++..|++|+.+.++||.++++|+. |.
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-~~------- 136 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH-FD------- 136 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeec----eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------
Confidence 357889999999999999999943 47788875 44679999999999999999999999999974 32
Q ss_pred hHHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC----------CC
Q 016140 144 YVNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD----------YS 212 (394)
Q Consensus 144 y~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~----------~~ 212 (394)
.|.|.... |. |.+++..+.|.++++.+++| |++. |--|..+|||+.... +.
T Consensus 137 ~P~~l~~~~GG--------W~~~~~~~~F~~ya~~~~~~--------fgd~--Vk~WiTfNEPn~~~~~gy~~~g~~~~p 198 (474)
T PRK09852 137 VPMHLVTEYGS--------WRNRKMVEFFSRYARTCFEA--------FDGL--VKYWLTFNEINIMLHSPFSGAGLVFEE 198 (474)
T ss_pred CCHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHH--------hcCc--CCeEEeecchhhhhccCccccCcccCC
Confidence 23344321 21 78999999999999999999 9995 556999999984311 01
Q ss_pred c-h----HHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCC-CCCc------------cCCCCCCCcc-----
Q 016140 213 G-K----TLNNW------VQEMASYVKSIDNKHLLEIGLEG--FYGDS-IPDK------------KQFNPGYQVG----- 261 (394)
Q Consensus 213 ~-~----~~~~w------~~~~~~~Ir~~dp~~~V~~g~~g--~~~~~-~~~~------------~~~n~~~~~g----- 261 (394)
+ . .++.. ..+++..+|+..|+..|.+-.+. ++..+ .+.+ ....|- ..|
T Consensus 199 ~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~-~~G~YP~~ 277 (474)
T PRK09852 199 GENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQ-ARGAYPAY 277 (474)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchh-hCCCccHH
Confidence 0 0 11221 23456677887776555443322 11111 0000 000110 000
Q ss_pred ---------c--cchh---hcCCCCccEEeeecCCCCCCCC--------CC-------hh---HH---HHHHHHHHHHHH
Q 016140 262 ---------T--DFIS---NNMIKEIDFTTIHAYPDQWLPG--------KN-------DY---AQ---MQFVQKWLASHW 306 (394)
Q Consensus 262 ---------~--~~~~---~~~~~~~D~~s~H~Y~~~w~~~--------~~-------~~---~~---~~~~~~~l~~~~ 306 (394)
. .+.. ......+||+++++|....... .. .+ .. .+..+.-|...+
T Consensus 278 ~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l 357 (474)
T PRK09852 278 SARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITM 357 (474)
T ss_pred HHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHH
Confidence 0 0000 0112456999999995432210 00 00 00 112334455555
Q ss_pred HHHhhcCCCcEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCC-----
Q 016140 307 TDSKTILKKPLVFSEFGKSSKE-----AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDG----- 376 (394)
Q Consensus 307 ~~~~~~~~kPv~v~EfG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g----- 376 (394)
...++.+++||+|+|.|+.... +...+..|..|+++.+..+.++...|-.+.|.++||+.++ .+|..|
T Consensus 358 ~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~y~~R 435 (474)
T PRK09852 358 NMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGEMSKR 435 (474)
T ss_pred HHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCCccce
Confidence 5554458899999999997432 2245788999999999999999888766899999999999 888777
Q ss_pred cEEEc
Q 016140 377 YEIVL 381 (394)
Q Consensus 377 ~~~~~ 381 (394)
||+++
T Consensus 436 fGLv~ 440 (474)
T PRK09852 436 YGFVY 440 (474)
T ss_pred eeeEE
Confidence 56655
No 18
>PLN02849 beta-glucosidase
Probab=99.75 E-value=2.4e-16 Score=159.11 Aligned_cols=281 Identities=19% Similarity=0.195 Sum_probs=182.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
....+++|++.||++|+|+.|+=+ .|++++|. .|.+|++.++..+++++.+.++||..+++|+. |+ .
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSI----sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~d-------l 144 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSI----SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YD-------H 144 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEec----cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CC-------C
Confidence 468899999999999999999932 58889886 36789999999999999999999999999974 42 2
Q ss_pred HHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC--------CCc--
Q 016140 145 VNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD--------YSG-- 213 (394)
Q Consensus 145 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~--------~~~-- 213 (394)
|.|.... |. |.+++..+.|.++.+.+++| |++. |--|..+|||+.... +.+
T Consensus 145 P~~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgDr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 206 (503)
T PLN02849 145 PQYLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGNH--VKFWTTINEANIFTIGGYNDGITPPGRC 206 (503)
T ss_pred cHHHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEecchhhhhhchhhhccCCCCcc
Confidence 4455432 32 78999999999999999999 9984 667999999985321 000
Q ss_pred --------------hHHHHH------HHHHHHHhhcc---CCCCEEEecccc--ccCCC-CCCc---------c----CC
Q 016140 214 --------------KTLNNW------VQEMASYVKSI---DNKHLLEIGLEG--FYGDS-IPDK---------K----QF 254 (394)
Q Consensus 214 --------------~~~~~w------~~~~~~~Ir~~---dp~~~V~~g~~g--~~~~~-~~~~---------~----~~ 254 (394)
..++.- ..++++.+|+. .|+..|.+-.+. .+..+ .+.+ . ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~ 286 (503)
T PLN02849 207 SSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWML 286 (503)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 011111 23456667765 255555442221 12111 0000 0 00
Q ss_pred CCC----CCc--------cc-cchh---hcCCCCccEEeeecCCCCCCCC---CC----h-----------hHH----HH
Q 016140 255 NPG----YQV--------GT-DFIS---NNMIKEIDFTTIHAYPDQWLPG---KN----D-----------YAQ----MQ 296 (394)
Q Consensus 255 n~~----~~~--------g~-~~~~---~~~~~~~D~~s~H~Y~~~w~~~---~~----~-----------~~~----~~ 296 (394)
+|- |.. .. .+.. ......+||+++++|....... .. . ... .+
T Consensus 287 dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~ 366 (503)
T PLN02849 287 EPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYA 366 (503)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCe
Confidence 110 000 00 0000 0112457999999995422110 00 0 000 01
Q ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEecCCCCCC---CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCC
Q 016140 297 FVQKWLASHWTDSKTILKK-PLVFSEFGKSSKE---AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQP 372 (394)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~k-Pv~v~EfG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~ 372 (394)
..+.-+...++..++.+++ ||+|+|.|+.... +...++.|.+|+++.+..+.++...|-.+.|+++|++.|+ .+
T Consensus 367 i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn--fE 444 (503)
T PLN02849 367 VAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDL--YE 444 (503)
T ss_pred EChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hc
Confidence 1233344555444444777 7999999987532 2245788999999999999998888766889999999999 88
Q ss_pred CCCCcE
Q 016140 373 YFDGYE 378 (394)
Q Consensus 373 w~~g~~ 378 (394)
|..||.
T Consensus 445 W~~Gy~ 450 (503)
T PLN02849 445 LLKGYE 450 (503)
T ss_pred hhcccc
Confidence 877766
No 19
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.9e-16 Score=152.37 Aligned_cols=279 Identities=19% Similarity=0.267 Sum_probs=183.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCC--CCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG--VYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
..+.++|++.||++|+|+.|+-+ .|+++.|..+ ..|++.++..|++++.|.++||..+++|+. |+ .
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI----~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-fd----~--- 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSI----EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-FD----L--- 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeee----eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC----C---
Confidence 57899999999999999999932 5888888654 589999999999999999999999999974 32 1
Q ss_pred HHHHHHc-CCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCC---------Cc-
Q 016140 145 VNWARAA-GASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY---------SG- 213 (394)
Q Consensus 145 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~---------~~- 213 (394)
|.|.... |. |.+.+..+.|.++.+.+.+| |++ -|--|-++|||+..... ..
T Consensus 126 P~~L~~~ygG--------W~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~~ 187 (460)
T COG2723 126 PLWLQKPYGG--------WENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGIV 187 (460)
T ss_pred cHHHhhccCC--------ccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCcc
Confidence 3343322 21 78999999999999999999 998 47789999999975421 11
Q ss_pred ---hHHHHHH------HHHHHHhhccCCC-CE-EEeccccccCCCC-CCc--------------------cCCCCCCC--
Q 016140 214 ---KTLNNWV------QEMASYVKSIDNK-HL-LEIGLEGFYGDSI-PDK--------------------KQFNPGYQ-- 259 (394)
Q Consensus 214 ---~~~~~w~------~~~~~~Ir~~dp~-~~-V~~g~~g~~~~~~-~~~--------------------~~~n~~~~-- 259 (394)
..+++.+ ..+.+.+|+..|+ .+ ++.+....+..+. +.+ .+..|.+.
T Consensus 188 ~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~ 267 (460)
T COG2723 188 DPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEK 267 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHH
Confidence 1122222 2446677888887 33 3333332232221 100 01111000
Q ss_pred ----cc-------ccchhhcCCCCccEEeeecCC-CCC-----------CCCCChh-------HH----HHHHHHHHHHH
Q 016140 260 ----VG-------TDFISNNMIKEIDFTTIHAYP-DQW-----------LPGKNDY-------AQ----MQFVQKWLASH 305 (394)
Q Consensus 260 ----~g-------~~~~~~~~~~~~D~~s~H~Y~-~~w-----------~~~~~~~-------~~----~~~~~~~l~~~ 305 (394)
.+ .|. +.+...-+||+++++|. ... ....-+. .. .+..+.-|...
T Consensus 268 ~~~~~~~~~~~~~~Dl-~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~ 346 (460)
T COG2723 268 ELEENGILPEIEDGDL-EILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDI 346 (460)
T ss_pred HHHhcCCCcccCcchH-HHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHH
Confidence 00 000 01122348999999996 211 1000000 00 11233345555
Q ss_pred HHHHhhcCCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCCcE
Q 016140 306 WTDSKTILKKPLVFSEFGKSSKE----AGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 306 ~~~~~~~~~kPv~v~EfG~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g~~ 378 (394)
+......+++|++|+|-|+...+ .+..++.|.+|+++.+..+.++...|-.+.|.+.|++.+. ..|..||.
T Consensus 347 l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~~gy~ 421 (460)
T COG2723 347 LEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWANGYK 421 (460)
T ss_pred HHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchhhccc
Confidence 55555448899999999977543 2246789999999999999999888766889999999987 66666655
No 20
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.74 E-value=2.4e-18 Score=173.20 Aligned_cols=281 Identities=18% Similarity=0.237 Sum_probs=177.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
....+++||+.||++|+|+.|+-+ .|++++|. .|.+|++.++..+++++.+.++||..+++|+. | .
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi----~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H-~----~--- 123 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSI----SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH-F----D--- 123 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES-S--------
T ss_pred chhhhhHHHHHHHhhccceeeeec----chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee-c----c---
Confidence 357899999999999999999943 48889998 58999999999999999999999999999975 3 1
Q ss_pred hHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC---------CCc-
Q 016140 144 YVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD---------YSG- 213 (394)
Q Consensus 144 y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~---------~~~- 213 (394)
.|.|....|. |.+++..+.|.++++.+++| |++. |--|..+|||+.... +..
T Consensus 124 ~P~~l~~~gg--------w~~~~~~~~F~~Ya~~~~~~--------~gd~--V~~w~T~NEp~~~~~~~y~~g~~~p~~~ 185 (455)
T PF00232_consen 124 LPLWLEDYGG--------WLNRETVDWFARYAEFVFER--------FGDR--VKYWITFNEPNVFALLGYLYGGFPPGRD 185 (455)
T ss_dssp -BHHHHHHTG--------GGSTHHHHHHHHHHHHHHHH--------HTTT--BSEEEEEETHHHHHHHHHTSSSSTTCSS
T ss_pred cccceeeccc--------ccCHHHHHHHHHHHHHHHHH--------hCCC--cceEEeccccceeecccccccccccccc
Confidence 3456543332 78899999999999999999 9985 556999999985321 111
Q ss_pred ---hHH------HHHHHHHHHHhhccCCCCEEEeccccc--cCCCC--CCc--------------------cCCCCC---
Q 016140 214 ---KTL------NNWVQEMASYVKSIDNKHLLEIGLEGF--YGDSI--PDK--------------------KQFNPG--- 257 (394)
Q Consensus 214 ---~~~------~~w~~~~~~~Ir~~dp~~~V~~g~~g~--~~~~~--~~~--------------------~~~n~~--- 257 (394)
+.+ ..-+.++.+.+|+..|+..|.+..+.. +..+. .+. .+..|.
T Consensus 186 ~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~ 265 (455)
T PF00232_consen 186 SLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMK 265 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHH
T ss_pred ccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHh
Confidence 111 122345677888888888876533211 11000 000 000110
Q ss_pred ---CCcc--ccchh---hcCCCCccEEeeecCCCCCC---C--CCChh-----------------HH--HHHHHHHHHHH
Q 016140 258 ---YQVG--TDFIS---NNMIKEIDFTTIHAYPDQWL---P--GKNDY-----------------AQ--MQFVQKWLASH 305 (394)
Q Consensus 258 ---~~~g--~~~~~---~~~~~~~D~~s~H~Y~~~w~---~--~~~~~-----------------~~--~~~~~~~l~~~ 305 (394)
...+ ..+.. ......+||+++++|..... + ..... .. ....+..+...
T Consensus 266 ~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~ 345 (455)
T PF00232_consen 266 EYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDV 345 (455)
T ss_dssp HHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHH
T ss_pred hccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhh
Confidence 0000 00100 11145799999999953111 0 00000 00 00113334444
Q ss_pred HHHHhhcCC-CcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCCCcE
Q 016140 306 WTDSKTILK-KPLVFSEFGKSSKEA----GFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 306 ~~~~~~~~~-kPv~v~EfG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~g~~ 378 (394)
++..++.++ +||+|+|.|++.... ...+..|..|+++.+..+.++...|-.+.|.++||+.++ .+|.+||+
T Consensus 346 L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~Gy~ 421 (455)
T PF00232_consen 346 LRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAEGYK 421 (455)
T ss_dssp HHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGGG
T ss_pred hhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--cccccCcc
Confidence 444433344 999999999987641 235789999999999999999887766889999999999 88887877
No 21
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=7.9e-15 Score=154.17 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=121.8
Q ss_pred CCCCCc--EEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCC
Q 016140 27 PAQAGF--VQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGV 104 (394)
Q Consensus 27 ~~~~~~--v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~ 104 (394)
+...|| |++..+.|.+||||++++|+|.+..........+.+.+++||+.||++|+|+||++++.+.
T Consensus 278 ~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~----------- 346 (808)
T COG3250 278 ALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNS----------- 346 (808)
T ss_pred EeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCC-----------
Confidence 345777 7778889999999999999996654433333346677999999999999999999865321
Q ss_pred CChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccc
Q 016140 105 YNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINT 184 (394)
Q Consensus 105 ~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~ 184 (394)
+ .++++|+++||+|+-+....+ ++ +..+++..+.....++++++|
T Consensus 347 --~-------~~ydLcDelGllV~~Ea~~~~--~~---------------------~~~~~~~~k~~~~~i~~mver--- 391 (808)
T COG3250 347 --E-------EFYDLCDELGLLVIDEAMIET--HG---------------------MPDDPEWRKEVSEEVRRMVER--- 391 (808)
T ss_pred --H-------HHHHHHHHhCcEEEEecchhh--cC---------------------CCCCcchhHHHHHHHHHHHHh---
Confidence 1 568999999999999874321 11 124677788889999999999
Q ss_pred cccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEecccc
Q 016140 185 ITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEG 242 (394)
Q Consensus 185 ~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g 242 (394)
-|+||+|+.|.++||+.-... ...+...+++.++.+++..+...
T Consensus 392 -----~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 -----DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred -----ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 999999999999999986432 35677889999999998876544
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.60 E-value=1.7e-14 Score=137.51 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=146.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCC-CCCChhhHHHHHHHHHHHHHcCCEEEEecCC--CCCCCCChhhhHH
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSP-GVYNEPVFQGLDFVISEARKYGIRLILSLSN--NYHDFGGRPQYVN 146 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~-g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~--~~~~~gg~~~y~~ 146 (394)
.++-|+.||+.|+|.||+=++.+ |.. |..+ ++...++...|+++||+|+||+|. .|++.|....-..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~-------P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVN-------PYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEeccC-------CcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 35679999999999999944322 222 4334 778888889999999999999985 3544443211011
Q ss_pred HHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCccCCC------CCchHHHHH
Q 016140 147 WARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDP-TIMAWELINEARCQAD------YSGKTLNNW 219 (394)
Q Consensus 147 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p-~I~~wel~NEp~~~~~------~~~~~~~~w 219 (394)
|. . .+-.++.++..++.+.+++. +++.- ..-+++++||-+.... ..-+.+..+
T Consensus 96 W~-----------~-~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~l 155 (332)
T PF07745_consen 96 WA-----------N-LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKL 155 (332)
T ss_dssp CT-----------S-SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHH
T ss_pred CC-----------C-CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHH
Confidence 10 0 11255666777777777776 55532 2334699999875432 122456677
Q ss_pred HHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhh--cCCCCccEEeeecCCCCCCCCCChhHHHHH
Q 016140 220 VQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISN--NMIKEIDFTTIHAYPDQWLPGKNDYAQMQF 297 (394)
Q Consensus 220 ~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~--~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~ 297 (394)
++..+++||+.+|+..|++....-.... . + ..|... ..--..|++++++||. |.. + +..
T Consensus 156 l~ag~~AVr~~~p~~kV~lH~~~~~~~~---~------~---~~~f~~l~~~g~d~DviGlSyYP~-w~~--~----l~~ 216 (332)
T PF07745_consen 156 LNAGIKAVREVDPNIKVMLHLANGGDND---L------Y---RWFFDNLKAAGVDFDVIGLSYYPF-WHG--T----LED 216 (332)
T ss_dssp HHHHHHHHHTHSSTSEEEEEES-TTSHH---H------H---HHHHHHHHHTTGG-SEEEEEE-ST-TST-------HHH
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCchH---H------H---HHHHHHHHhcCCCcceEEEecCCC-Ccc--h----HHH
Confidence 8888999999999999998653211000 0 0 001111 1124578999999997 543 1 111
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCCC----------------CC--CChHHHHHHHHHHHHHHHHHHhcCCcccc
Q 016140 298 VQKWLASHWTDSKTILKKPLVFSEFGKSSKE----------------AG--FSINVRDSFLNTIYMNIYNLARNGGAIGG 359 (394)
Q Consensus 298 ~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 359 (394)
+...++...+.++|||+|.|+|.+... .+ .+.+.|.+|++++++.+.+- .. +.+.|
T Consensus 217 ----l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~-p~-~~g~G 290 (332)
T PF07745_consen 217 ----LKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV-PN-GGGLG 290 (332)
T ss_dssp ----HHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS----TTEEE
T ss_pred ----HHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh-cc-CCeEE
Confidence 222233322237999999999987651 01 25778999999988776542 22 23789
Q ss_pred cccc--cccccC-------CCCCCCCcEEEcCCCchHHHH
Q 016140 360 GMVW--QLMAEG-------MQPYFDGYEIVLSQNPSTRSV 390 (394)
Q Consensus 360 ~~~W--~~~~~g-------~~~w~~g~~~~~~~~~~~~~~ 390 (394)
.||| .|.+.. ...| ++=.++..++..+++|
T Consensus 291 vfYWeP~w~~~~~~~~~~~g~~w-~n~~lFD~~g~~l~sl 329 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWGGGSSW-DNQALFDFNGNALPSL 329 (332)
T ss_dssp EEEE-TT-GGGTTHHHHTTTSSS-SBGSSB-TTSBB-GGG
T ss_pred EEeeccccccCCcccccCCCCCc-cccccCCCCCCCchHh
Confidence 9999 454432 1233 3334655666655544
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=99.57 E-value=1.3e-13 Score=143.39 Aligned_cols=176 Identities=20% Similarity=0.289 Sum_probs=130.3
Q ss_pred CCcEEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhh
Q 016140 30 AGFVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPV 109 (394)
Q Consensus 30 ~~~v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~ 109 (394)
..-|+++++.|++||+|+++.+..+|+++. .++.|++.|++||++|+|+|-+++++ ...||.||.||-+.
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~W----n~HEp~~G~~dF~G 96 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVFW----NGHEPSPGNYYFED 96 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEecc----cccCCCCCeeeccc
Confidence 345899999999999999999999988763 35899999999999999999999875 45899999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCC----CCCCCCChhhhHHHHHHcCCCCCCCcccc-cCHHHHHHHHHHHHHHHhcccc
Q 016140 110 FQGLDFVISEARKYGIRLILSLSN----NYHDFGGRPQYVNWARAAGASVNSDDEFY-TNAIVKGYYKNHVKKVLTRINT 184 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~~----~~~~~gg~~~y~~w~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~lv~r~~~ 184 (394)
...|.+++++|++.||+||+.+.- .| ++||. |.|.... +...+- +|+...++..+++.+|+.++.+
T Consensus 97 ~~DL~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGl---P~WL~~~-----~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~ 167 (840)
T PLN03059 97 RYDLVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGF---PVWLKYV-----PGIEFRTDNGPFKAAMQKFTEKIVDMMKS 167 (840)
T ss_pred hHHHHHHHHHHHHcCCEEEecCCcceeeee-cCCCC---chhhhcC-----CCcccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999742 24 35774 5575321 112333 3678888888888888877210
Q ss_pred cccccccCCCcEeEEEeccCCccCCC---CCchHHHHHHHHHHH
Q 016140 185 ITRIAYKDDPTIMAWELINEARCQAD---YSGKTLNNWVQEMAS 225 (394)
Q Consensus 185 ~~~~~~~~~p~I~~wel~NEp~~~~~---~~~~~~~~w~~~~~~ 225 (394)
....+++--.|++.++.||...... .....+..|+++|+.
T Consensus 168 -~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~ 210 (840)
T PLN03059 168 -EKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAV 210 (840)
T ss_pred -cceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHH
Confidence 0111344445788999999976521 122456666666553
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.55 E-value=1.5e-13 Score=131.85 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=109.4
Q ss_pred eEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHH
Q 016140 39 QFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVIS 118 (394)
Q Consensus 39 ~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~ 118 (394)
+|++||+|+++.+...|+.+. .++.|++.|++||++|+|+|-+++++ ...++.+|+||-+....|+++++
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~------p~~~W~~~l~k~ka~G~n~v~~yv~W----~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRI------PPEYWRDRLQKMKAAGLNTVSTYVPW----NLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE--H----HHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccC------ChhHHHHHHHHHHhCCcceEEEeccc----cccCCCCCcccccchhhHHHHHH
Confidence 589999999999999877753 35789999999999999999998864 45788999999888899999999
Q ss_pred HHHHcCCEEEEecCC----CCCCCCChhhhHHHHHHcCCCCCCCcccc-cCHHHHHHHHHHHHHHHhcccccccccccCC
Q 016140 119 EARKYGIRLILSLSN----NYHDFGGRPQYVNWARAAGASVNSDDEFY-TNAIVKGYYKNHVKKVLTRINTITRIAYKDD 193 (394)
Q Consensus 119 ~a~~~Gi~vii~l~~----~~~~~gg~~~y~~w~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~ 193 (394)
+|+++||+||+.+.- .| ..|| ++.|.... ....+- .|+...+...++++.|++.+.+ ..+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~-~~gG---~P~Wl~~~-----~~~~~R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEW-DNGG---LPAWLLRK-----PDIRLRTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTB-GGGG-----GGGGGS-----TTS-SSSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceecccc-cchh---hhhhhhcc-----ccccccccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 999999999998732 22 2344 45665432 011122 3577777777777777766333 234444
Q ss_pred CcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCC
Q 016140 194 PTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNK 233 (394)
Q Consensus 194 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 233 (394)
-.|++.++.||..... .-.+.++.+.+..++....
T Consensus 139 GpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 5688999999998432 2244555666666665444
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.49 E-value=9.6e-13 Score=124.71 Aligned_cols=227 Identities=23% Similarity=0.340 Sum_probs=116.4
Q ss_pred CCeEEE-CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCC-CC--------CCcc-cCCC--
Q 016140 37 GTQFVL-NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDG-GY--------GALQ-QSPG-- 103 (394)
Q Consensus 37 g~~~~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~-~~--------~~~~-~~~g-- 103 (394)
+++|+. +|+||++.|-. +|...... +.++++..|+..|+.|||+||+-++..- .. .++. ..++
T Consensus 2 ~r~f~~~dG~Pff~lgdT-~W~~~~~~---~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDT-AWSLFHRL---TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE--TTHHHH-----HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHH-HHHHhhCC---CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 567884 89999999977 45433321 5678899999999999999999665431 11 1111 1122
Q ss_pred ---CCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh--HHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHH
Q 016140 104 ---VYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY--VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKV 178 (394)
Q Consensus 104 ---~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y--~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (394)
.+|+++|+.+|++|+.|.++||.+.|-+. | |. .| ..|.. | . +.-..+..+++++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--w----g~-~~~~~~Wg~--~-----~-----~~m~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--W----GC-PYVPGTWGF--G-----P-----NIMPPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS-------HH-HHH--------------T-----TSS-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--E----CC-ccccccccc--c-----c-----cCCCHHHHHHHHHHH
Confidence 36899999999999999999999987653 2 11 12 12321 0 0 111245568899999
Q ss_pred HhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCC
Q 016140 179 LTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGY 258 (394)
Q Consensus 179 v~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~ 258 (394)
++| |+..|+|+ |.|.||- .. .....+..+++++.||+.||.+|+|+...+. ... +
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~----~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~--~~~-------~-- 193 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FD----TEKTRADWDAMARGIKENDPYQLITIHPCGR--TSS-------P-- 193 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BT--EBT-------H--
T ss_pred HHH--------HhcCCCCE-EEecCcc-CC----CCcCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCc-------c--
Confidence 999 99999988 9999999 21 1223444589999999999988998864321 000 0
Q ss_pred CccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 016140 259 QVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSK 327 (394)
Q Consensus 259 ~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~ 327 (394)
+. ....+-+||.++...-..-. ... -..+.+.. ..++...|||+.+|-+.-..
T Consensus 194 ----~~--~~~~~Wldf~~~Qsgh~~~~-~~~--------~~~~~~~~-~~~~~p~KPvin~Ep~YEg~ 246 (289)
T PF13204_consen 194 ----DW--FHDEPWLDFNMYQSGHNRYD-QDN--------WYYLPEEF-DYRRKPVKPVINGEPCYEGI 246 (289)
T ss_dssp ----HH--HTT-TT--SEEEB--S--TT---T--------HHHH--HH-HHTSSS---EEESS---BT-
T ss_pred ----hh--hcCCCcceEEEeecCCCccc-chH--------HHHHhhhh-hhhhCCCCCEEcCcccccCC
Confidence 11 12345577777655321100 000 01121112 22334899999999987543
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.1e-12 Score=130.19 Aligned_cols=118 Identities=23% Similarity=0.218 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHcCCCEEEEccccCCCCCCcc-cCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHH
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQ-QSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNW 147 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~-~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w 147 (394)
..++++..||+.|+|+||+++.... +.... ..|.....+.+..||++|++|+++||+|+|++|... |+....
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi~~~~-~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~---~~~~~~--- 146 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPIGYWA-LQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP---GGNNGH--- 146 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcccchhh-hhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccC---CCCCCc---
Confidence 3489999999999999999653210 10111 234444356667999999999999999999999642 222110
Q ss_pred HHHcCCCCCCCccccc-CHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCcc
Q 016140 148 ARAAGASVNSDDEFYT-NAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 148 ~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
........|. ..+.++.+.+.|++|++| |++.+.|+++++.|||+.
T Consensus 147 ------~~s~~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 ------EHSGYTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred ------CcccccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 0001112222 245778999999999999 999999999999999996
No 27
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.43 E-value=2.4e-11 Score=113.31 Aligned_cols=229 Identities=18% Similarity=0.307 Sum_probs=145.6
Q ss_pred CCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHH
Q 016140 95 YGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNH 174 (394)
Q Consensus 95 ~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
|..++|++|.|| ++.+|+++++|+++||+|.--.. -|.. +.+.|.... ..++..+.+.++
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~~-----------~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFNL-----------SKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhcC-----------CHHHHHHHHHHH
Confidence 667899999998 89999999999999999843111 1311 235565311 134678899999
Q ss_pred HHHHHhcccccccccccCCCcEeEEEeccCCccCCCC--CchHH-----HHHHHHHHHHhhccCCCCEEEeccccccCCC
Q 016140 175 VKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY--SGKTL-----NNWVQEMASYVKSIDNKHLLEIGLEGFYGDS 247 (394)
Q Consensus 175 ~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~--~~~~~-----~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~ 247 (394)
++.+++| |++. |..|++.|||...... ....+ ..|+....+.+|+.||+..+.++. ++..
T Consensus 63 i~~v~~r--------y~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~~ 129 (254)
T smart00633 63 IKTVVGR--------YKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNTE 129 (254)
T ss_pred HHHHHHH--------hCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCCc
Confidence 9999999 9875 7889999999864210 00011 267888999999999999888753 2211
Q ss_pred CCCccCCCCCCCcc-ccchhhc-CC-CCccEEee--ecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEec
Q 016140 248 IPDKKQFNPGYQVG-TDFISNN-MI-KEIDFTTI--HAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEF 322 (394)
Q Consensus 248 ~~~~~~~n~~~~~g-~~~~~~~-~~-~~~D~~s~--H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~Ef 322 (394)
... ..... ..+...+ .. -.+|.+++ |.+... .+ . ..+...++...+ .++||+|+|+
T Consensus 130 ~~~------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~----~----~~~~~~l~~~~~-~g~pi~iTE~ 190 (254)
T smart00633 130 EPN------AKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGS----PN----I----AEIRAALDRFAS-LGLEIQITEL 190 (254)
T ss_pred Ccc------HHHHHHHHHHHHHHHCCCccceeeeeeeecCCC----CC----H----HHHHHHHHHHHH-cCCceEEEEe
Confidence 100 00000 0111111 11 23777665 443211 11 1 124444555555 7999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCCCC--CcEEEcCCC
Q 016140 323 GKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPYFD--GYEIVLSQN 384 (394)
Q Consensus 323 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w~~--g~~~~~~~~ 384 (394)
.+.... +.+.|+++++.+++.+++. ..+.|.++|.+.+. ..|.. .-+++..+.
T Consensus 191 dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~~~~~~~L~d~~~ 245 (254)
T smart00633 191 DISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWLDGGAPLLFDANY 245 (254)
T ss_pred ecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--CcccCCCCceeECCCC
Confidence 998753 3378889999998887764 13689999999877 45644 235655443
No 28
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.9e-10 Score=103.72 Aligned_cols=250 Identities=15% Similarity=0.181 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCC--CCCCCCChhhhH
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSN--NYHDFGGRPQYV 145 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~--~~~~~gg~~~y~ 145 (394)
...+-|+.+|+.|+|.||+-++.+. +..-... -|.. ..++..-++-+.|+..||+|++|+|. +|++.+-...-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP-~dsngn~yggGn--nD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDP-YDSNGNGYGGGN--NDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCC-ccCCCCccCCCc--chHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcH
Confidence 3455699999999999999443321 1100000 1122 23667778888899999999999984 354443221111
Q ss_pred HHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCc-EeEEEeccCCccCCC---CCc---hHHHH
Q 016140 146 NWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPT-IMAWELINEARCQAD---YSG---KTLNN 218 (394)
Q Consensus 146 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~-I~~wel~NEp~~~~~---~~~---~~~~~ 218 (394)
.|.. ..-...+.+...+-+.+++. +++.-. +-+.+++||-+...- ..+ +.+.+
T Consensus 141 aW~~------------l~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~ 200 (403)
T COG3867 141 AWEN------------LNFEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA 200 (403)
T ss_pred Hhhh------------cCHHHHHHHHHHHHHHHHHH--------HHHcCCCccceEeccccCCceeccCCCCcChHHHHH
Confidence 2311 01134455566666666666 665432 234599999986532 222 33455
Q ss_pred HHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhh-cCCCCccEEeeecCCCCCCCCCChhHHHHH
Q 016140 219 WVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISN-NMIKEIDFTTIHAYPDQWLPGKNDYAQMQF 297 (394)
Q Consensus 219 w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~-~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~ 297 (394)
++++.+.++|+.+|+..|.+.... + ...+. |..- |... ...-..|++..-+||. |... ++-
T Consensus 201 L~n~g~~avrev~p~ikv~lHla~--g-~~n~~------y~~~--fd~ltk~nvdfDVig~SyYpy-Whgt------l~n 262 (403)
T COG3867 201 LLNAGIRAVREVSPTIKVALHLAE--G-ENNSL------YRWI--FDELTKRNVDFDVIGSSYYPY-WHGT------LNN 262 (403)
T ss_pred HHHHHhhhhhhcCCCceEEEEecC--C-CCCch------hhHH--HHHHHHcCCCceEEeeecccc-ccCc------HHH
Confidence 677888999999999999875421 1 11000 1100 1111 1223567899999997 5421 111
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCC----------------CCCC--ChHHHHHHHHHHHHHHHHHHhcCCcccc
Q 016140 298 VQKWLASHWTDSKTILKKPLVFSEFGKSSK----------------EAGF--SINVRDSFLNTIYMNIYNLARNGGAIGG 359 (394)
Q Consensus 298 ~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G 359 (394)
+..-+. ..+.+ ++|-|+|.|.+.... .+++ +.+-|+.+.|++++++.+- ..+ .+.|
T Consensus 263 L~~nl~---dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv-p~~-~GlG 336 (403)
T COG3867 263 LTTNLN---DIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV-PKS-NGLG 336 (403)
T ss_pred HHhHHH---HHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC-CCC-CceE
Confidence 111111 23444 899999999987321 0122 4567899999999877653 332 3689
Q ss_pred cccccc
Q 016140 360 GMVWQL 365 (394)
Q Consensus 360 ~~~W~~ 365 (394)
.|||.=
T Consensus 337 vFYWEp 342 (403)
T COG3867 337 VFYWEP 342 (403)
T ss_pred EEEecc
Confidence 999963
No 29
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.32 E-value=2e-10 Score=113.66 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=172.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-C--CCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-P--GVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRP 142 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~--g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~ 142 (394)
....+++|++.|+++|+++.|+=+ .|+++-|. + +..+++.++....++++..++||..+++|+. |+.
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSI----sWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDl----- 158 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSI----SWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDL----- 158 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEe----ehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCC-----
Confidence 456789999999999999999933 47666663 3 4689999999999999999999999999973 532
Q ss_pred hhHHHHHH-cCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC-----------
Q 016140 143 QYVNWARA-AGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD----------- 210 (394)
Q Consensus 143 ~y~~w~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~----------- 210 (394)
|.+... .|. |-+++.++.|+++.+-.-++ |+|. |-.|..+|||+....
T Consensus 159 --Pq~LeDeYgG--------wLn~~ivedF~~yA~~CF~~--------fGDr--VK~WiT~NEP~v~s~~gY~~G~~aPG 218 (524)
T KOG0626|consen 159 --PQALEDEYGG--------WLNPEIVEDFRDYADLCFQE--------FGDR--VKHWITFNEPNVFSIGGYDTGTKAPG 218 (524)
T ss_pred --CHHHHHHhcc--------ccCHHHHHHHHHHHHHHHHH--------hccc--ceeeEEecccceeeeehhccCCCCCC
Confidence 222221 111 67899999999999999999 9984 778999999984321
Q ss_pred -C-----------C-chHHHH------HHHHHHHHhhcc-C--CCCEEEecccc-ccCCCCCC--c-------cCCCCC-
Q 016140 211 -Y-----------S-GKTLNN------WVQEMASYVKSI-D--NKHLLEIGLEG-FYGDSIPD--K-------KQFNPG- 257 (394)
Q Consensus 211 -~-----------~-~~~~~~------w~~~~~~~Ir~~-d--p~~~V~~g~~g-~~~~~~~~--~-------~~~n~~- 257 (394)
+ + .+.+.. -+.++.+..|+. . .+-.|.+.... |+-+..+. + ..|.-+
T Consensus 219 rCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw 298 (524)
T KOG0626|consen 219 RCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGW 298 (524)
T ss_pred CCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhh
Confidence 0 0 111111 123334444433 1 22233332222 22111110 0 000000
Q ss_pred CCc---cccch---------------h---hcCCCCccEEeeecCCCCCCCC-C--C--------------h--------
Q 016140 258 YQV---GTDFI---------------S---NNMIKEIDFTTIHAYPDQWLPG-K--N--------------D-------- 291 (394)
Q Consensus 258 ~~~---g~~~~---------------~---~~~~~~~D~~s~H~Y~~~w~~~-~--~--------------~-------- 291 (394)
+.. ..|++ + .......||+.++.|....... . . .
T Consensus 299 ~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (524)
T KOG0626|consen 299 FLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLI 378 (524)
T ss_pred hhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccc
Confidence 000 00111 0 1123457999999995321100 0 0 0
Q ss_pred -----hHHHHHHHHHHHHHHHHHhh-cCCCcEEEEecCCCCCCCC-------CChHHHHHHHHHHHHHHHHHHh-cCCcc
Q 016140 292 -----YAQMQFVQKWLASHWTDSKT-ILKKPLVFSEFGKSSKEAG-------FSINVRDSFLNTIYMNIYNLAR-NGGAI 357 (394)
Q Consensus 292 -----~~~~~~~~~~l~~~~~~~~~-~~~kPv~v~EfG~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 357 (394)
...+...+.-++..++..+. +.+.|++|+|-|......+ ..+..|..|++..+.++.++.. .+-.+
T Consensus 379 ~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv 458 (524)
T KOG0626|consen 379 GPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNV 458 (524)
T ss_pred cccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCce
Confidence 00011112223444444433 3678999999999876321 3577899999998888888876 44447
Q ss_pred cccccccccccCCCCCCCCcE
Q 016140 358 GGGMVWQLMAEGMQPYFDGYE 378 (394)
Q Consensus 358 ~G~~~W~~~~~g~~~w~~g~~ 378 (394)
.|.++||+.++ .+|.+||+
T Consensus 459 ~GYf~WSLmDn--fEw~~Gy~ 477 (524)
T KOG0626|consen 459 KGYFVWSLLDN--FEWLDGYK 477 (524)
T ss_pred eeEEEeEcccc--hhhhcCcc
Confidence 89999999999 99988887
No 30
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.31 E-value=2.9e-12 Score=99.46 Aligned_cols=75 Identities=25% Similarity=0.532 Sum_probs=47.2
Q ss_pred ccCCCcEeEEEeccC-CccCC--------CCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCc
Q 016140 190 YKDDPTIMAWELINE-ARCQA--------DYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQV 260 (394)
Q Consensus 190 ~~~~p~I~~wel~NE-p~~~~--------~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~ 260 (394)
|+++|+|++|||+|| |.... ....+.+..|++++++.||++||+++||+|..+. ..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~~------------ 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---DW------------ 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S----T------------
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---CH------------
Confidence 999999999999999 66221 0124678899999999999999999999875321 10
Q ss_pred cccchhhcCCCCccEEeeecC
Q 016140 261 GTDFISNNMIKEIDFTTIHAY 281 (394)
Q Consensus 261 g~~~~~~~~~~~~D~~s~H~Y 281 (394)
..+ .....+.+||+++|.|
T Consensus 70 -~~~-~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 -EDL-EQLQAENLDVISFHPY 88 (88)
T ss_dssp -THH-HHS--TT-SSEEB-EE
T ss_pred -HHH-HHhchhcCCEEeeecC
Confidence 011 2234578999999998
No 31
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.5e-10 Score=119.08 Aligned_cols=176 Identities=20% Similarity=0.346 Sum_probs=126.4
Q ss_pred EeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHH
Q 016140 35 TRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLD 114 (394)
Q Consensus 35 ~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld 114 (394)
.++..++++|+++.+.|..++... +.++.+.+||+.||++|+|+||+-.| .|..++|+.|.||-+ .+|
T Consensus 3 ~~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fdf~---~~D 70 (673)
T COG1874 3 YDGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFDFT---WLD 70 (673)
T ss_pred ccccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccCcc---cch
Confidence 356678899999999999854332 24578999999999999999999333 377799999999955 555
Q ss_pred HH-HHHHHHcCCEEEEecCCCCCCCCChh-----hhHHHHHH--cCCC---CCCCcccccCHHHHHHHHHHHHHHHhccc
Q 016140 115 FV-ISEARKYGIRLILSLSNNYHDFGGRP-----QYVNWARA--AGAS---VNSDDEFYTNAIVKGYYKNHVKKVLTRIN 183 (394)
Q Consensus 115 ~~-l~~a~~~Gi~vii~l~~~~~~~gg~~-----~y~~w~~~--~g~~---~~~~~~~~~~~~~~~~~~~~~~~lv~r~~ 183 (394)
.. ++.|.+.||+||+.... .|+.+ .|+.|... .+.. .......++++-+++......++|++|+
T Consensus 71 ~~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~- 145 (673)
T COG1874 71 EIFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL- 145 (673)
T ss_pred HHHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH-
Confidence 55 99999999999998721 12211 23333211 1110 0223455778888888888999999984
Q ss_pred ccccccccCCCcEeEEEeccCCccC-CC--CCchHHHHHHHHHHHHhhccCCC
Q 016140 184 TITRIAYKDDPTIMAWELINEARCQ-AD--YSGKTLNNWVQEMASYVKSIDNK 233 (394)
Q Consensus 184 ~~~~~~~~~~p~I~~wel~NEp~~~-~~--~~~~~~~~w~~~~~~~Ir~~dp~ 233 (394)
|+++|+|++|.+-||..+. .. .+....+.|+++-.+.|..++..
T Consensus 146 ------~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~ 192 (673)
T COG1874 146 ------YGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEA 192 (673)
T ss_pred ------hccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhh
Confidence 9999999999999999883 22 23455667888777777766543
No 32
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3.1e-10 Score=114.23 Aligned_cols=156 Identities=22% Similarity=0.311 Sum_probs=121.0
Q ss_pred CCcEEEeCCeEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhh
Q 016140 30 AGFVQTRGTQFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPV 109 (394)
Q Consensus 30 ~~~v~~~g~~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~ 109 (394)
..-|..+++.|.+||+++.+.+..+||++. .++.|++.++++|+.|+|+|-++++++ ..+|.||.|+-..
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVfWn----~Hep~~g~y~FsG 86 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVFWN----LHEPSPGKYDFSG 86 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeeecc----cccCCCCcccccc
Confidence 445777899999999999999999999874 358999999999999999999998855 4899999999888
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCC----CCCCCCChhhhHHHHHHcCCCCCCCccccc-CHHHHHHHHHHHHHHHhcccc
Q 016140 110 FQGLDFVISEARKYGIRLILSLSN----NYHDFGGRPQYVNWARAAGASVNSDDEFYT-NAIVKGYYKNHVKKVLTRINT 184 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~~----~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~lv~r~~~ 184 (394)
.-+|-++|.+|++.|++|++.+.- .| ++||.+ -|.+. .....|-+ |+....+++++++.|+.+.+
T Consensus 87 ~~DlvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P---~wL~~-----~pg~~~Rt~nepfk~~~~~~~~~iv~~mk- 156 (649)
T KOG0496|consen 87 RYDLVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLP---WWLRN-----VPGIVFRTDNEPFKAEMERWTTKIVPMMK- 156 (649)
T ss_pred hhHHHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcc---hhhhh-----CCceEEecCChHHHHHHHHHHHHHHHHHH-
Confidence 899999999999999999998842 23 457765 24332 12234444 57788899999999998643
Q ss_pred cccccccCCCcEeEEEeccCCcc
Q 016140 185 ITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 185 ~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
..-+++---|++-++.||...
T Consensus 157 --~L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 157 --KLFASQGGPIILVQIENEYGN 177 (649)
T ss_pred --HHHhhcCCCEEEEEeechhhH
Confidence 222333333556799999984
No 33
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.97 E-value=3.6e-09 Score=107.76 Aligned_cols=279 Identities=16% Similarity=0.214 Sum_probs=127.8
Q ss_pred chhhHHHHHHHHH-HcCCCEEEEcc-ccCCCCCCcc-cCCC--CCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCC--
Q 016140 66 QRYKVSDVFRQAA-AAGLSVCRTWA-FSDGGYGALQ-QSPG--VYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDF-- 138 (394)
Q Consensus 66 ~~~~~~~d~~~lk-~~G~N~vRi~~-~~~~~~~~~~-~~~g--~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~-- 138 (394)
-+.++...+..++ ++|+..||+|- ++++--...+ ...| .|| |..+|++++...++||+.++.|.--....
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~~~ 113 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPMALAS 113 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBS
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhhcC
Confidence 3467888888887 79999999953 5442110011 1222 266 99999999999999999999984311110
Q ss_pred CChhhhHHHHHHcCCCCCCCcccccCHHHHHHH----HHHHHHHHhcccccccccccCCC-cEeEEEeccCCccCCC---
Q 016140 139 GGRPQYVNWARAAGASVNSDDEFYTNAIVKGYY----KNHVKKVLTRINTITRIAYKDDP-TIMAWELINEARCQAD--- 210 (394)
Q Consensus 139 gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~lv~r~~~~~~~~~~~~p-~I~~wel~NEp~~~~~--- 210 (394)
+....+ ......+.|.-.+.+ ..+++++++| |+.+. .-.-||++|||+....
T Consensus 114 ~~~~~~------------~~~~~~~pp~~~~~W~~lv~~~~~h~~~R--------YG~~ev~~W~fEiWNEPd~~~f~~~ 173 (486)
T PF01229_consen 114 GYQTVF------------WYKGNISPPKDYEKWRDLVRAFARHYIDR--------YGIEEVSTWYFEIWNEPDLKDFWWD 173 (486)
T ss_dssp S--EET------------TTTEE-S-BS-HHHHHHHHHHHHHHHHHH--------HHHHHHTTSEEEESS-TTSTTTSGG
T ss_pred CCCccc------------cccCCcCCcccHHHHHHHHHHHHHHHHhh--------cCCccccceeEEeCcCCCcccccCC
Confidence 100000 000011123233344 4555555555 55321 1135899999997532
Q ss_pred CCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCC--
Q 016140 211 YSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPG-- 288 (394)
Q Consensus 211 ~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~-- 288 (394)
...+++.++++..+.+||+.+|...|. |. ++.. ... ........+..... -.+||+|+|.|+......
T Consensus 174 ~~~~ey~~ly~~~~~~iK~~~p~~~vG-Gp-~~~~-~~~------~~~~~~l~~~~~~~-~~~DfiS~H~y~~~~~~~~~ 243 (486)
T PF01229_consen 174 GTPEEYFELYDATARAIKAVDPELKVG-GP-AFAW-AYD------EWCEDFLEFCKGNN-CPLDFISFHSYGTDSAEDIN 243 (486)
T ss_dssp G-HHHHHHHHHHHHHHHHHH-TTSEEE-EE-EEET-T-T------HHHHHHHHHHHHCT----SEEEEEEE-BESESE-S
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCccc-Cc-cccc-cHH------HHHHHHHHHHhcCC-CCCCEEEEEecccccccccc
Confidence 233568888999999999999998863 22 1110 000 00000111211122 357999999998532111
Q ss_pred CChhHHHHHHHHH---HHHHHHHHh--hcCCCcEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 016140 289 KNDYAQMQFVQKW---LASHWTDSK--TILKKPLVFSEFGKSSKEAG--FSINVRDSFLNTIYMNIYNLARNGGAIGGGM 361 (394)
Q Consensus 289 ~~~~~~~~~~~~~---l~~~~~~~~--~~~~kPv~v~EfG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 361 (394)
......+...+.. +....+... ...++|+.++||+....... .+...+++|+-. .+.+.. ++...+.-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~--~~~l~~~s 318 (486)
T PF01229_consen 244 ENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND--GAFLDSFS 318 (486)
T ss_dssp S-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--GGT-SEEE
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--hhhhhhhh
Confidence 0000111111111 111111111 12568999999998665311 122244444332 122321 11134677
Q ss_pred cccccccC------CCCCCCCcEEEcC
Q 016140 362 VWQLMAEG------MQPYFDGYEIVLS 382 (394)
Q Consensus 362 ~W~~~~~g------~~~w~~g~~~~~~ 382 (394)
+|.+.+.- ......|+|+.--
T Consensus 319 ywt~sD~Fee~~~~~~pf~ggfGLlt~ 345 (486)
T PF01229_consen 319 YWTFSDRFEENGTPRKPFHGGFGLLTK 345 (486)
T ss_dssp ES-SBS---TTSS-SSSSSS-S-SEEC
T ss_pred ccchhhhhhccCCCCCceecchhhhhc
Confidence 88887531 2555788886553
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.80 E-value=1.5e-08 Score=97.53 Aligned_cols=247 Identities=18% Similarity=0.266 Sum_probs=149.3
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcC
Q 016140 73 VFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAG 152 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g 152 (394)
..+.+-..-+|.+=.- +..-|..+++.+|.++ ++..|+++++|+++||.|---..- |.. ..++|....
T Consensus 26 ~~~~~~~~~Fn~~t~e--N~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~Lv-W~~-----~~P~w~~~~- 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPE--NEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTLV-WHS-----QTPDWVFNL- 93 (320)
T ss_dssp HHHHHHHHH-SEEEES--STTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEEE-ESS-----SS-HHHHTS-
T ss_pred HHHHHHHHhCCeeeec--cccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeEE-Ecc-----cccceeeec-
Confidence 3555555667876651 1123666788899888 889999999999999998722110 211 236676531
Q ss_pred CCCCCCcccccCH---HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC-C---CchHH-----HHHH
Q 016140 153 ASVNSDDEFYTNA---IVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD-Y---SGKTL-----NNWV 220 (394)
Q Consensus 153 ~~~~~~~~~~~~~---~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~-~---~~~~~-----~~w~ 220 (394)
.-++.. .+++.+.++++.++.| |++...|.+|++.|||..... . ....+ ..++
T Consensus 94 -------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi 158 (320)
T PF00331_consen 94 -------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYI 158 (320)
T ss_dssp -------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHH
T ss_pred -------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHH
Confidence 001222 3788899999999999 998888999999999976532 0 00111 2467
Q ss_pred HHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhc-CC-CCccEE--eeecCCCCCCCCCChhHHHH
Q 016140 221 QEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNN-MI-KEIDFT--TIHAYPDQWLPGKNDYAQMQ 296 (394)
Q Consensus 221 ~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~-~~-~~~D~~--s~H~Y~~~w~~~~~~~~~~~ 296 (394)
..+.+..|+.+|+....+.. ++...... .. .-..+...+ .. -.||-+ +.|.-....
T Consensus 159 ~~aF~~A~~~~P~a~L~~ND---y~~~~~~k----~~--~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~----------- 218 (320)
T PF00331_consen 159 ADAFRAAREADPNAKLFYND---YNIESPAK----RD--AYLNLVKDLKARGVPIDGIGLQSHFDAGYP----------- 218 (320)
T ss_dssp HHHHHHHHHHHTTSEEEEEE---SSTTSTHH----HH--HHHHHHHHHHHTTHCS-EEEEEEEEETTSS-----------
T ss_pred HHHHHHHHHhCCCcEEEecc---ccccchHH----HH--HHHHHHHHHHhCCCccceechhhccCCCCC-----------
Confidence 88899999999999887743 22111100 00 000111111 11 126665 455543321
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHHHHhcCCcccccccccccccCCCCC
Q 016140 297 FVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAG---FSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMAEGMQPY 373 (394)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~w 373 (394)
...+.+.++.... ++.||.|+|+-+...... ..++.|+++++++++.+++.... .+.|..+|.+.+. ..|
T Consensus 219 --~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~--~sW 291 (320)
T PF00331_consen 219 --PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDG--YSW 291 (320)
T ss_dssp --HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTT--GST
T ss_pred --HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCC--Ccc
Confidence 1124445555555 899999999998776421 12677889999988887775311 3789999999987 455
No 35
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1e-05 Score=73.41 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=123.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
+-+++..||+.++..+. .||++.. + -..|..++.++.+.|++|++.+.-
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~s-D-----------------Cn~le~v~pAa~~~g~kv~lGiw~------------ 109 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYGS-D-----------------CNTLENVLPAAEASGFKVFLGIWP------------ 109 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEeec-c-----------------chhhhhhHHHHHhcCceEEEEEee------------
Confidence 56789999999999987 9999641 1 344667889999999999998731
Q ss_pred HHHHHcCCCCCCCcccccCHHHHHHHH-HHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHH
Q 016140 146 NWARAAGASVNSDDEFYTNAIVKGYYK-NHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMA 224 (394)
Q Consensus 146 ~w~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~ 224 (394)
+| +.+.... ..++++.. +...+.|....++||.-...+....++...+...-
T Consensus 110 -----------------td-d~~~~~~~til~ay~~---------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vr 162 (305)
T COG5309 110 -----------------TD-DIHDAVEKTILSAYLP---------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVR 162 (305)
T ss_pred -----------------cc-chhhhHHHHHHHHHhc---------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHH
Confidence 11 1111222 23333332 56778899999999998776666677777888888
Q ss_pred HHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHH
Q 016140 225 SYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLAS 304 (394)
Q Consensus 225 ~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~ 304 (394)
.++++.+-+-+|++.. .|. ... -|| ..+...||+..|.-+. |.....-...-.++...+ +
T Consensus 163 sav~~agy~gpV~T~d-sw~-~~~-----~np-----------~l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~~q~-e 222 (305)
T COG5309 163 SAVKEAGYDGPVTTVD-SWN-VVI-----NNP-----------ELCQASDFIAANAHAY-WDGQTVANAAGTFLLEQL-E 222 (305)
T ss_pred HHHHhcCCCCceeecc-cce-eee-----CCh-----------HHhhhhhhhhcccchh-ccccchhhhhhHHHHHHH-H
Confidence 8888777777766532 221 000 012 1245568876555543 532211111111121112 2
Q ss_pred HHHHHhhcCCCcEEEEecCCCCCCCC-----CChHHHHHHHHHHHHHH
Q 016140 305 HWTDSKTILKKPLVFSEFGKSSKEAG-----FSINVRDSFLNTIYMNI 347 (394)
Q Consensus 305 ~~~~~~~~~~kPv~v~EfG~~~~~~~-----~~~~~~~~~~~~~~~~~ 347 (394)
.++.+.- .+|+++|+|.|-+.++.. -+.+.|..+++.+...+
T Consensus 223 ~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~ 269 (305)
T COG5309 223 RVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL 269 (305)
T ss_pred HHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh
Confidence 2222221 349999999999987532 25777888877765433
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.46 E-value=7.4e-06 Score=71.11 Aligned_cols=141 Identities=19% Similarity=0.310 Sum_probs=96.4
Q ss_pred CcchhhHHHHHHHHHHcCCCEEEE-cc-ccCCC-CC-CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Q 016140 64 PSQRYKVSDVFRQAAAAGLSVCRT-WA-FSDGG-YG-ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFG 139 (394)
Q Consensus 64 ~~~~~~~~~d~~~lk~~G~N~vRi-~~-~~~~~-~~-~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~g 139 (394)
.++..+++++|+.|++.|+++|=+ |. +.... ++ .+ .++.+....-+.|+.+|++|+++||+|++.|...
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~--~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~----- 88 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL--SPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD----- 88 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc--cCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC-----
Confidence 467899999999999999999855 22 11100 11 11 1222333445789999999999999999998531
Q ss_pred ChhhhHHHHHHcCCCCCCCcccccCHHH-HHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 140 GRPQYVNWARAAGASVNSDDEFYTNAIV-KGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 140 g~~~y~~w~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
+.|.+. .+++. .+.-+..++.+.++ |++||++.||=|-.|+..... ....
T Consensus 89 -----~~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~ 139 (166)
T PF14488_consen 89 -----PDYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPE 139 (166)
T ss_pred -----chhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHH
Confidence 111110 12222 22234567778888 999999999999999987642 2355
Q ss_pred HHHHHHHHhhccCCCCEEEecc
Q 016140 219 WVQEMASYVKSIDNKHLLEIGL 240 (394)
Q Consensus 219 w~~~~~~~Ir~~dp~~~V~~g~ 240 (394)
..+.+...++++.++.||+++.
T Consensus 140 ~~~~l~~~lk~~s~~~Pv~ISp 161 (166)
T PF14488_consen 140 RFALLGKYLKQISPGKPVMISP 161 (166)
T ss_pred HHHHHHHHHHHhCCCCCeEEec
Confidence 5678888899999999998853
No 37
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.45 E-value=2.4e-06 Score=78.95 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=75.0
Q ss_pred EEeccCCccCCCC--CchHHHHHHHHHHHHhhccCCCCEEEeccccccCCC-CCCccCCCCCCCccccchhhcC-CCCcc
Q 016140 199 WELINEARCQADY--SGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDS-IPDKKQFNPGYQVGTDFISNNM-IKEID 274 (394)
Q Consensus 199 wel~NEp~~~~~~--~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~-~~~~~~~n~~~~~g~~~~~~~~-~~~~D 274 (394)
+..+|||+..... +.+...+..+++...+|. ++..|. +.+-..... .+. +...-..|..... .-.+|
T Consensus 69 ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~-sPa~~~~~~~~~~------g~~Wl~~F~~~~~~~~~~D 139 (239)
T PF11790_consen 69 LLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLG-SPAVAFTNGGTPG------GLDWLSQFLSACARGCRVD 139 (239)
T ss_pred eeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEE-CCeecccCCCCCC------ccHHHHHHHHhcccCCCcc
Confidence 4678999986532 334444445666666674 333322 111100100 000 0000012333322 24799
Q ss_pred EEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 016140 275 FTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNG 354 (394)
Q Consensus 275 ~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (394)
|+++|.|... ... +..+++.+++..+|||+|+|||+....+..+.+++.+|+++++..+.+.
T Consensus 140 ~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~---- 201 (239)
T PF11790_consen 140 FIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQ---- 201 (239)
T ss_pred EEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcC----
Confidence 9999999322 111 2333344433478999999999876444457888999999988766443
Q ss_pred Cccccccccc
Q 016140 355 GAIGGGMVWQ 364 (394)
Q Consensus 355 ~~~~G~~~W~ 364 (394)
..+..+++..
T Consensus 202 ~~VeryawF~ 211 (239)
T PF11790_consen 202 PYVERYAWFG 211 (239)
T ss_pred CCeeEEEecc
Confidence 2244555555
No 38
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=8.5e-06 Score=80.80 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=86.2
Q ss_pred eEEECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHH
Q 016140 39 QFVLNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVIS 118 (394)
Q Consensus 39 ~~~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~ 118 (394)
.|.+||.|+++.|.|.+-..... +..+-+.++-.++..++.|+|++|+|.- |.|. =|++.+
T Consensus 329 yfkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYE------sd~FY~ 389 (867)
T KOG2230|consen 329 YFKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYE------SDYFYQ 389 (867)
T ss_pred EEEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------cccc------chhHHH
Confidence 35579999999999933222111 2224456677899999999999999841 2232 246789
Q ss_pred HHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeE
Q 016140 119 EARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMA 198 (394)
Q Consensus 119 ~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~ 198 (394)
+|++.||.|.-|+.- .+ ..+.++.+..+...+-++.=+.| .+.||+|+.
T Consensus 390 lad~lGilVWQD~MF------AC-----------------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviI 438 (867)
T KOG2230|consen 390 LADSLGILVWQDMMF------AC-----------------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVII 438 (867)
T ss_pred HhhhccceehhhhHH------Hh-----------------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEE
Confidence 999999998665421 01 12346777888888888888999 999999999
Q ss_pred EEeccCCcc
Q 016140 199 WELINEARC 207 (394)
Q Consensus 199 wel~NEp~~ 207 (394)
|.--||-+.
T Consensus 439 fsgNNENEa 447 (867)
T KOG2230|consen 439 FSGNNENEA 447 (867)
T ss_pred EeCCCccHH
Confidence 999998764
No 39
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.00013 Score=68.27 Aligned_cols=117 Identities=24% Similarity=0.406 Sum_probs=82.4
Q ss_pred CCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHH
Q 016140 95 YGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNH 174 (394)
Q Consensus 95 ~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (394)
|..++|++|.|+ |+.-|++++-|+++||.+---.. -|.. +.++|.... + .+.+.....+.++
T Consensus 69 we~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhGHtL-vW~~-----q~P~W~~~~--------e-~~~~~~~~~~e~h 130 (345)
T COG3693 69 WEAIEPERGRFN---FEAADAIANFARKHNMPLHGHTL-VWHS-----QVPDWLFGD--------E-LSKEALAKMVEEH 130 (345)
T ss_pred cccccCCCCccC---ccchHHHHHHHHHcCCeecccee-eecc-----cCCchhhcc--------c-cChHHHHHHHHHH
Confidence 667888899888 88899999999999998632110 1211 235565311 1 2346778889999
Q ss_pred HHHHHhcccccccccccCCCcEeEEEeccCCccCCCC-------CchHHHHHHHHHHHHhhccCCCCEEEec
Q 016140 175 VKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY-------SGKTLNNWVQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 175 ~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~-------~~~~~~~w~~~~~~~Ir~~dp~~~V~~g 239 (394)
+..++.| ||+. +.+|++.||+-..... ++-.-..+++......|+.||+....+.
T Consensus 131 I~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~N 192 (345)
T COG3693 131 IKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIN 192 (345)
T ss_pred HHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEee
Confidence 9999999 9996 8899999999763211 0111235677788888999999887664
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.11 E-value=0.00056 Score=66.35 Aligned_cols=221 Identities=16% Similarity=0.246 Sum_probs=92.8
Q ss_pred HHcCCCEEEEcccc----CC-------CCC---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 78 AAAGLSVCRTWAFS----DG-------GYG---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 78 k~~G~N~vRi~~~~----~~-------~~~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
+.+|+|.+|+.+-. .+ .|+ .+.+.+|.||=+.=+.=..++++|+++|+..++-+.+.. |
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNSP------P- 129 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNSP------P- 129 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SSS--------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecCC------C-
Confidence 56999999996522 11 122 233455666522222334588999999999888664431 1
Q ss_pred hHHHHHHcCCCCCCC-cccccCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCccCC-C-------CCc
Q 016140 144 YVNWARAAGASVNSD-DEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDP-TIMAWELINEARCQA-D-------YSG 213 (394)
Q Consensus 144 y~~w~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p-~I~~wel~NEp~~~~-~-------~~~ 213 (394)
-|+...|...... ..---.++..+.|.+|+..+|++ |+.+- .|--.+.+|||...- . .+.
T Consensus 130 --~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~ 199 (384)
T PF14587_consen 130 --WWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTN 199 (384)
T ss_dssp --GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----H
T ss_pred --HHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCH
Confidence 1222122111000 00011346788899999999999 75543 455668999998541 1 123
Q ss_pred hHHHHHHHHHHHHhhccCCCCEEEeccccc----cCCCC--CCc-----cCCCCCCCccccchhhcCCCCc-cEEeeecC
Q 016140 214 KTLNNWVQEMASYVKSIDNKHLLEIGLEGF----YGDSI--PDK-----KQFNPGYQVGTDFISNNMIKEI-DFTTIHAY 281 (394)
Q Consensus 214 ~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~----~~~~~--~~~-----~~~n~~~~~g~~~~~~~~~~~~-D~~s~H~Y 281 (394)
+.....++.+..++++...+..|+++-++- +.... ... ..|+|.. ..++ ...+++ .+++-|.|
T Consensus 200 ~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s---~~yi--~~l~~v~~~i~~HsY 274 (384)
T PF14587_consen 200 EEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDS---STYI--GDLPNVPNIISGHSY 274 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTTS---TT----TT-TTEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCc---hhhh--hccccchhheeeccc
Confidence 556788899999999988888787765442 21100 000 0122211 1111 122333 57899999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHhhc-CCCcEEEEecCCCCCC
Q 016140 282 PDQWLPGKNDYAQMQFVQKWLASHWTDSKTI-LKKPLVFSEFGKSSKE 328 (394)
Q Consensus 282 ~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~kPv~v~EfG~~~~~ 328 (394)
|+... ...+...++-+.+. +.+. .+..++.+||+.-.+.
T Consensus 275 ---wt~~~--~~~l~~~R~~~~~~---~~~~~~~~~~wqtE~~il~~~ 314 (384)
T PF14587_consen 275 ---WTDSP--WDDLRDIRKQLADK---LDKYSPGLKYWQTEYCILGDN 314 (384)
T ss_dssp ---T-SSS--HHHHHHHHHHHHHH---HHTTSS--EEEE----S----
T ss_pred ---ccCCC--HHHHHHHHHHHHHH---HHhhCcCCceeeeeeeeccCC
Confidence 44321 22233333333333 3331 3788999999987653
No 41
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.78 E-value=0.00087 Score=68.18 Aligned_cols=255 Identities=17% Similarity=0.175 Sum_probs=123.4
Q ss_pred HHHHHHHHHHcCCCEEEEcccc-CCC---CCCcccCCC-----CCC--hhhHHHHHHHHHHHHHc--CCEEEEecCCCCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFS-DGG---YGALQQSPG-----VYN--EPVFQGLDFVISEARKY--GIRLILSLSNNYH 136 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~-~~~---~~~~~~~~g-----~~~--~~~l~~ld~~l~~a~~~--Gi~vii~l~~~~~ 136 (394)
++..|. =..+|++.+|+.+-+ |.. |. +...|+ .|+ .+..+.+--+|..|.+. +|+++-+..+.
T Consensus 103 l~~~F~-~~G~g~s~~R~pIgssDfs~~~Yt-y~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSpWSp-- 178 (496)
T PF02055_consen 103 LRSLFS-EDGIGYSLLRVPIGSSDFSTRPYT-YDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASPWSP-- 178 (496)
T ss_dssp HHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEES----
T ss_pred HHHHhh-cCCceEEEEEeeccCcCCcCCccc-ccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEecCCC--
Confidence 444444 245889999997633 211 11 122222 221 11222333455555443 58888887542
Q ss_pred CCCChhhhHHHHHHcCCCCCCCccccc---CHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCccCCC--
Q 016140 137 DFGGRPQYVNWARAAGASVNSDDEFYT---NAIVKGYYKNHVKKVLTRINTITRIAYKDDP-TIMAWELINEARCQAD-- 210 (394)
Q Consensus 137 ~~gg~~~y~~w~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p-~I~~wel~NEp~~~~~-- 210 (394)
|.|++..+.-. ...... .+++.+.+.+++.+.++. |+.+- .|-+..+.|||.....
T Consensus 179 --------P~WMKtn~~~~--g~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 179 --------PAWMKTNGSMN--GGGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp ---------GGGBTTSSSC--SS-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT
T ss_pred --------CHHHccCCcCc--CCCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCC
Confidence 34554332110 001111 245677777877777777 88765 5888899999985321
Q ss_pred ---C----CchHHHHHHHH-HHHHhhccCC--CCEEEeccccccCCCCCCccCCCCCCCccccchh-hcCCCCccEEeee
Q 016140 211 ---Y----SGKTLNNWVQE-MASYVKSIDN--KHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFIS-NNMIKEIDFTTIH 279 (394)
Q Consensus 211 ---~----~~~~~~~w~~~-~~~~Ir~~dp--~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~-~~~~~~~D~~s~H 279 (394)
+ +.+...+|++. +..++++..+ +.-|.+..+.... .|.+.. .... ..+...+|.+++|
T Consensus 241 ~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~~~~--~il~d~~A~~yv~GiA~H 309 (496)
T PF02055_consen 241 YPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPDYAD--TILNDPEAAKYVDGIAFH 309 (496)
T ss_dssp -SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTHHHH--HHHTSHHHHTTEEEEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cchhhh--hhhcChhhHhheeEEEEE
Confidence 1 24566788875 8889998876 5555543221110 010000 0000 1234579999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCC----CChHHH-HHHHHHHHHHHHHHHhcC
Q 016140 280 AYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAG----FSINVR-DSFLNTIYMNIYNLARNG 354 (394)
Q Consensus 280 ~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~ 354 (394)
.|...- .. .-+.+. ..+..+|.++.+|-.......+ ...-.| ..|...++. .+..+
T Consensus 310 wY~g~~-----~~-------~~l~~~---h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~----~lnn~ 370 (496)
T PF02055_consen 310 WYGGDP-----SP-------QALDQV---HNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIG----DLNNW 370 (496)
T ss_dssp ETTCS------HC-------HHHHHH---HHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHH----HHHTT
T ss_pred CCCCCc-----hh-------hHHHHH---HHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHH----HHHhh
Confidence 996521 00 012211 1223789999999876543211 111122 334344443 33333
Q ss_pred Cccccccccccc--ccCCCCCCCCcE
Q 016140 355 GAIGGGMVWQLM--AEGMQPYFDGYE 378 (394)
Q Consensus 355 ~~~~G~~~W~~~--~~g~~~w~~g~~ 378 (394)
..||+.|++. .+|.++|..++.
T Consensus 371 --~~gw~~WNl~LD~~GGP~~~~n~~ 394 (496)
T PF02055_consen 371 --VSGWIDWNLALDENGGPNWVGNFC 394 (496)
T ss_dssp --EEEEEEEESEBETTS---TT---B
T ss_pred --ceeeeeeeeecCCCCCCcccCCCC
Confidence 6899999986 456677765543
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.019 Score=54.70 Aligned_cols=239 Identities=17% Similarity=0.174 Sum_probs=113.6
Q ss_pred hhHHHHHHH-HHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHH
Q 016140 68 YKVSDVFRQ-AAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVN 146 (394)
Q Consensus 68 ~~~~~d~~~-lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~ 146 (394)
...+..|.. .-++|+..+|+++-+..-| + .|.+|.. .+.| .+-.-+...|++|+-+..+. +.
T Consensus 65 a~l~t~Fgng~~~lg~si~Rv~I~~ndfs--l---~g~~d~w-~kel-s~Ak~~in~g~ivfASPWsp----------Pa 127 (433)
T COG5520 65 AQLETLFGNGANQLGFSILRVPIDSNDFS--L---GGSADNW-YKEL-STAKSAINPGMIVFASPWSP----------PA 127 (433)
T ss_pred HHHHHHhcCCccccCceEEEEEecccccc--c---CCCcchh-hhhc-ccchhhcCCCcEEEecCCCC----------ch
Confidence 344444443 2358999999976432111 1 1222210 0111 11122678899999887553 22
Q ss_pred HHHHcCCCCC-CCcccccCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCccCCCC-----CchHHHHH
Q 016140 147 WARAAGASVN-SDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDP-TIMAWELINEARCQADY-----SGKTLNNW 219 (394)
Q Consensus 147 w~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p-~I~~wel~NEp~~~~~~-----~~~~~~~w 219 (394)
|++..+.... ....+ -++.-..+.+++...|.. ++++- .+-+..+.|||+...+. ...+..++
T Consensus 128 ~Mktt~~~ngg~~g~L--k~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF 197 (433)
T COG5520 128 SMKTTNNRNGGNAGRL--KYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRF 197 (433)
T ss_pred hhhhccCcCCcccccc--chhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHH
Confidence 3332211000 00011 123334455555555555 66554 57788999999987432 12333444
Q ss_pred HHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHH
Q 016140 220 VQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQ 299 (394)
Q Consensus 220 ~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~ 299 (394)
+++ ..+.+..+.-|.+- +.+. +.|.... .-+.-......+|++..|.|....... .
T Consensus 198 ~~q---yl~si~~~~rV~~p-es~~---------~~~~~~d-p~lnDp~a~a~~~ilg~H~Ygg~v~~~----------p 253 (433)
T COG5520 198 MRQ---YLASINAEMRVIIP-ESFK---------DLPNMSD-PILNDPKALANMDILGTHLYGGQVSDQ----------P 253 (433)
T ss_pred HHH---hhhhhccccEEecc-hhcc---------ccccccc-ccccCHhHhcccceeEeeecccccccc----------h
Confidence 443 33333333333331 1111 0111000 001112345689999999997642211 1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Q 016140 300 KWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLMA 367 (394)
Q Consensus 300 ~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~ 367 (394)
.++ ....- .+|-|+++|.-....+++. ++| +.+ .+...+...-..|+ ..|..+|.+..
T Consensus 254 ~~l----ak~~~-~gKdlwmte~y~~esd~~s--~dr-~~~-~~~~hi~~gm~~gg-~~ayv~W~i~~ 311 (433)
T COG5520 254 YPL----AKQKP-AGKDLWMTECYPPESDPNS--ADR-EAL-HVALHIHIGMTEGG-FQAYVWWNIRL 311 (433)
T ss_pred hhH----hhCCC-cCCceEEeecccCCCCCCc--chH-HHH-HHHHHHHhhccccC-ccEEEEEEEee
Confidence 111 11111 5899999998877765432 222 122 22333433333443 67889998863
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.20 E-value=0.032 Score=53.60 Aligned_cols=208 Identities=17% Similarity=0.285 Sum_probs=108.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCC--CC-CcccC----CCC-CChhhHHHHHHHHHHHHHcCCEEEEecC-CCC-
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGG--YG-ALQQS----PGV-YNEPVFQGLDFVISEARKYGIRLILSLS-NNY- 135 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~--~~-~~~~~----~g~-~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~- 135 (394)
+++.+++.++.|+++|+|+|=+-+...|. |+ .+.|- .|. .....++-|..+|++|+++||.|.-=+- ...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 56889999999999999988774433332 11 12221 110 1122478899999999999999875431 100
Q ss_pred CCCCC-hhhhHHHHH--HcCCCCC----CCccccc---CHHHHHHHHHHHHHHHhcccccccccccCC---CcEeEEEe-
Q 016140 136 HDFGG-RPQYVNWAR--AAGASVN----SDDEFYT---NAIVKGYYKNHVKKVLTRINTITRIAYKDD---PTIMAWEL- 201 (394)
Q Consensus 136 ~~~gg-~~~y~~w~~--~~g~~~~----~~~~~~~---~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~---p~I~~wel- 201 (394)
...+. ....+.|.. ..|.... .....|- .|+.++...+.++.||++= ...|+.+-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y-dvDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY-DVDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC-CCCeEEecccccccccCCCCCc
Confidence 00000 011223321 1111111 1223333 4799999999999999881 1223222110 11111100
Q ss_pred ----ccCCcc---CCC-CC-------chHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchh
Q 016140 202 ----INEARC---QAD-YS-------GKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFIS 266 (394)
Q Consensus 202 ----~NEp~~---~~~-~~-------~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~ 266 (394)
..+-.. ... .+ .+.+..+++++.+.||+++|+..+++...|.++... +.-+ .|+..
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y------~~~~---qD~~~ 246 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAY------DDYY---QDWRN 246 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhh------hhee---ccHHH
Confidence 000000 000 01 234556688899999999999999886655442111 0001 12221
Q ss_pred hcCCCCccEEeeecCCC
Q 016140 267 NNMIKEIDFTTIHAYPD 283 (394)
Q Consensus 267 ~~~~~~~D~~s~H~Y~~ 283 (394)
=.....+|++....|..
T Consensus 247 W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 247 WLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHhcCCccEEEeeeccc
Confidence 12346799999999943
No 44
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=97.17 E-value=0.0021 Score=61.35 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 016140 110 FQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+++.|.+.+-|++.|+++++.|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 57899999999999999999995
No 45
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.81 E-value=0.49 Score=45.38 Aligned_cols=277 Identities=14% Similarity=0.213 Sum_probs=133.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCC---CCC---cccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGG---YGA---LQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFG 139 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~---~~~---~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~g 139 (394)
+...+++.++.+++.|+|+|=+=+-.+.+ ++. .....|.. ......+..+++.++++|||+|--+..+-+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 45789999999999999999884332211 211 11112221 222478899999999999999966633211100
Q ss_pred ChhhhHHHHH--HcCCCCC-CCcccccC---HHHHHHHHHHHHHHHhcccccccccccC--CCcEeEEEeccCCccCCCC
Q 016140 140 GRPQYVNWAR--AAGASVN-SDDEFYTN---AIVKGYYKNHVKKVLTRINTITRIAYKD--DPTIMAWELINEARCQADY 211 (394)
Q Consensus 140 g~~~y~~w~~--~~g~~~~-~~~~~~~~---~~~~~~~~~~~~~lv~r~~~~~~~~~~~--~p~I~~wel~NEp~~~~~~ 211 (394)
. ...+.|+. ..|.... ....-|.| ++.++...+..+.+++. .|..+.|-. -|.- ...+........
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIqfDYIRFP~~---~~~~~l~y~~~~ 163 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQFDYIRFPDE---GRLSGLDYSEND 163 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEeeeeecCCC---CcccccccCCCC
Confidence 0 01123332 1121111 11122444 57777777877777765 222221110 1210 000001100000
Q ss_pred ----CchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCC
Q 016140 212 ----SGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLP 287 (394)
Q Consensus 212 ----~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~ 287 (394)
..+.+..+++.+.+.++..+ ..|++-.-|.-.... ....-|.++. ...+.+|+++.=.||.+|..
T Consensus 164 ~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~~-------~~~~iGQ~~~--~~a~~vD~IsPMiYPSh~~~ 232 (316)
T PF13200_consen 164 TEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWSP-------DDMGIGQDFE--KIAEYVDYISPMIYPSHYGP 232 (316)
T ss_pred CcchHHHHHHHHHHHHHHHHhHcC--CCEEEEecccccccC-------CCCCcCCCHH--HHhhhCCEEEecccccccCc
Confidence 12456778888888887654 455543222211000 0012233443 23678999999999998875
Q ss_pred CC-----ChhHHHHHHHHHHHHHHHHHhhcCCCcE---EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCcccc
Q 016140 288 GK-----NDYAQMQFVQKWLASHWTDSKTILKKPL---VFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAIGG 359 (394)
Q Consensus 288 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~kPv---~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 359 (394)
+. +...-.+.....+....+......++++ +++-|-.......+ ...-.++.+.-+.++.++ | +.|
T Consensus 233 g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~~~-~~Yg~~ev~aQI~A~~d~----g-~~~ 306 (316)
T PF13200_consen 233 GFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGKNY-KEYGPEEVRAQIQALKDA----G-IEG 306 (316)
T ss_pred ccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEecccccccccccccCc-cccCHHHHHHHHHHHHHc----C-CCe
Confidence 42 1111123344444433333332112333 56666665432100 111122223323333332 3 689
Q ss_pred ccccccc
Q 016140 360 GMVWQLM 366 (394)
Q Consensus 360 ~~~W~~~ 366 (394)
|++|+-.
T Consensus 307 ~llWna~ 313 (316)
T PF13200_consen 307 WLLWNAS 313 (316)
T ss_pred EEEECCC
Confidence 9999754
No 46
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.43 E-value=0.044 Score=57.55 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=85.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEc-cccCCCCCCcccCCC-CCCh--hhHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTW-AFSDGGYGALQQSPG-VYNE--PVFQGLDFVISEARKYGIRLILSLS-NNYHDFGG 140 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~-~~~~~~~~~~~~~~g-~~~~--~~l~~ld~~l~~a~~~Gi~vii~l~-~~~~~~gg 140 (394)
+-.-+.+-|+.|+++|+|+|=+- ++.......+.+..- ..|+ ...+.|.+++++|+++||+||+|+- |+- |.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~---~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHT---GD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcC---CC
Confidence 55678888999999999999993 333211111111110 1111 1357899999999999999999983 211 11
Q ss_pred h-------------------hhhHHHHHH--cCCC--C---CC-CcccccCHHHHHHHHHHHHHHHhcccccccccccCC
Q 016140 141 R-------------------PQYVNWARA--AGAS--V---NS-DDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDD 193 (394)
Q Consensus 141 ~-------------------~~y~~w~~~--~g~~--~---~~-~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~ 193 (394)
. ..|.+|..- .|.. . .. +.-=+.+|+.++.+.+-...++++ |-+.
T Consensus 254 ~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~--------Wl~~ 325 (598)
T PRK10785 254 SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRH--------WLKA 325 (598)
T ss_pred CCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHH--------hhcC
Confidence 0 011122100 0000 0 00 001134677777766544456665 4432
Q ss_pred C-cEeEE--EeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 194 P-TIMAW--ELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 194 p-~I~~w--el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
+ .|=|| ++.+|..... ....-..+.+++.+.+|+..|+..+.
T Consensus 326 ~~giDG~RlDva~~v~~~~--~~~~~~~f~~~~~~~vk~~~pd~~li 370 (598)
T PRK10785 326 PYNIDGWRLDVVHMLGEGG--GARNNLQHVAGITQAAKEENPEAYVL 370 (598)
T ss_pred CCCCcEEEEecHhHhcccc--CccccHHHHHHHHHHHHhhCCCeEEE
Confidence 1 34444 4455542110 01123467788999999999987753
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.00047 Score=67.70 Aligned_cols=339 Identities=19% Similarity=0.295 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHh--hccCCCCCCCcEEEeCC-eEEECCeE------EEEEeeeccccccccCCCcchhhHHHHHHHHH
Q 016140 8 FSFLWAIALLLHLA--SAQTLPAQAGFVQTRGT-QFVLNGSP------FLFNGFNSYWMMNVASQPSQRYKVSDVFRQAA 78 (394)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~g~-~~~~~G~~------~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk 78 (394)
++++-.|.....+. ..-+.-..-++|-++.- -|.++|++ ....|.|. ..++.-++.++
T Consensus 11 wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~-------------~y~~~fla~a~ 77 (587)
T COG3934 11 WPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNV-------------WYAAWFLAPAG 77 (587)
T ss_pred chhhhhhhHHHHhhhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccH-------------HHHHHHhhhcc
Confidence 44555555554443 11112234556666644 44578888 44555552 34556677777
Q ss_pred HcCCCEEEEcccc--C--C-----CCCCcc-cCCCCCChh-----------hHH--HHHHH-HHHHHHcC--CEEEEecC
Q 016140 79 AAGLSVCRTWAFS--D--G-----GYGALQ-QSPGVYNEP-----------VFQ--GLDFV-ISEARKYG--IRLILSLS 132 (394)
Q Consensus 79 ~~G~N~vRi~~~~--~--~-----~~~~~~-~~~g~~~~~-----------~l~--~ld~~-l~~a~~~G--i~vii~l~ 132 (394)
.+++.++++.+.. + | .|..-| |+.--||+. .+. .+|-. +.|+.++- .+..+...
T Consensus 78 ~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N 157 (587)
T COG3934 78 YLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVN 157 (587)
T ss_pred cCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChh
Confidence 8888888875432 1 1 122111 111122322 222 22222 22333333 11222233
Q ss_pred CCCCCCCChhhhHHHHHH-----cCCCCC-------CCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE
Q 016140 133 NNYHDFGGRPQYVNWARA-----AGASVN-------SDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWE 200 (394)
Q Consensus 133 ~~~~~~gg~~~y~~w~~~-----~g~~~~-------~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~we 200 (394)
+.|.+.+++..|.+|... .|.+.. ....++.|-.+...+..+-..++.|+....+..+.+.|++++|.
T Consensus 158 ~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~ 237 (587)
T COG3934 158 NFWDWSGEMYAYIKWLDDGHLVSVGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQ 237 (587)
T ss_pred HHHHHHHHHHHHhhccCCCCeeecCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccc
Confidence 445556666777777642 122211 11223334344444555556677888888888899999999999
Q ss_pred eccCCccCCC-----CCchHHHHHHHHHHHHhhccCCCCEEEecccccc-CCCCCCccCCCCCCCccccchhhcCCCCcc
Q 016140 201 LINEARCQAD-----YSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFY-GDSIPDKKQFNPGYQVGTDFISNNMIKEID 274 (394)
Q Consensus 201 l~NEp~~~~~-----~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~-~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D 274 (394)
+.|++..... ........|..- ++-.-....+|=+ .+++. +...+. ..+.|. ..+...+.....+.+|
T Consensus 238 pV~leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwc-lsdf~~gsdd~e-y~w~p~-el~fgiIradgpek~~ 311 (587)
T COG3934 238 PVNLEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWC-LSDFHLGSDDSE-YTWGPM-ELEFGIIRADGPEKID 311 (587)
T ss_pred eeeccccCCcccccccccchhhhhhhh---HHhhcCCceEEEE-ecCCccCCCCCC-Cccccc-cceeeeecCCCchhhh
Confidence 9999986532 123445666554 1111122334322 11121 111110 011121 0000112222334566
Q ss_pred EEeeecCCCCCCCCC--Chh----HHH-HHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC----CCCChHHHHHHHHHH
Q 016140 275 FTTIHAYPDQWLPGK--NDY----AQM-QFVQKWLASHWTDSKTILKKPLVFSEFGKSSKE----AGFSINVRDSFLNTI 343 (394)
Q Consensus 275 ~~s~H~Y~~~w~~~~--~~~----~~~-~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~----~~~~~~~~~~~~~~~ 343 (394)
+-++|..+..|..-. ++. +.. -.-+.++++++..+.+ +.+|+++-+++..... .+.+...|+..++.+
T Consensus 312 a~~~~~fsn~~kdI~~~Sfq~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~ 390 (587)
T COG3934 312 AMTLHIFSNNWKDISMCSFQPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTM 390 (587)
T ss_pred HHHHHHhccccceeeeecccCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhc
Confidence 667777765543211 110 000 0113345666666666 8999999999976542 223344455555542
Q ss_pred HHHHHHHHhcCCccccccccccc
Q 016140 344 YMNIYNLARNGGAIGGGMVWQLM 366 (394)
Q Consensus 344 ~~~~~~~~~~~~~~~G~~~W~~~ 366 (394)
++.-.-....++..+|...|.+.
T Consensus 391 l~d~kllmipsgpt~g~Ttw~~l 413 (587)
T COG3934 391 LDDAKLLMIPSGPTAGVTTWAWL 413 (587)
T ss_pred CCchhheeecCCcccchhHHHHH
Confidence 22111111122346788888875
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=95.87 E-value=0.044 Score=47.63 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccc-cCC----CCCCcccCC-CCCCh--hhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAF-SDG----GYGALQQSP-GVYNE--PVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~-~~~----~~~~~~~~~-g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+-..+.+.++.++++|+|+|-+... ... .+..+.+.. -..++ ...+.+.++++.|+++||+|++|+-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5667888899999999999999432 211 111111111 01111 2358899999999999999999984
No 49
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.19 Score=49.64 Aligned_cols=183 Identities=13% Similarity=0.203 Sum_probs=97.0
Q ss_pred chhhHHHH-HHHHHHcCCCEEEEcc--ccCC-CCC----CcccCCCC------CChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDV-FRQAAAAGLSVCRTWA--FSDG-GYG----ALQQSPGV------YNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d-~~~lk~~G~N~vRi~~--~~~~-~~~----~~~~~~g~------~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+..-.++| ++.+|++-+.++|.+- |.++ .|. +.+..|-. +.|+--=....++++|+..|.-+.+.+
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~av 125 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAV 125 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEE
Confidence 33344444 8899999999999943 2111 121 12222221 223333456789999999999998887
Q ss_pred CCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccC---
Q 016140 132 SNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQ--- 208 (394)
Q Consensus 132 ~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~--- 208 (394)
.-. ++|.+.-.+|+..-.. +...+|.+ +|.--- ++.--+|-.|.|+||.++.
T Consensus 126 N~G---srgvd~ar~~vEY~n~---pggtywsd----------lR~~~G---------~~~P~nvK~w~lGNEm~GpWq~ 180 (501)
T COG3534 126 NLG---SRGVDEARNWVEYCNH---PGGTYWSD----------LRRENG---------REEPWNVKYWGLGNEMDGPWQC 180 (501)
T ss_pred ecC---CccHHHHHHHHHHccC---CCCChhHH----------HHHhcC---------CCCCcccceEEeccccCCCccc
Confidence 432 2343333345432100 11122221 111111 2222378899999999543
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCC-EEEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCC
Q 016140 209 ADYSGKTLNNWVQEMASYVKSIDNKH-LLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPD 283 (394)
Q Consensus 209 ~~~~~~~~~~w~~~~~~~Ir~~dp~~-~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~ 283 (394)
.....+.+-.++.+..+..|=.||.. .+.+|+++-..+.. +... +-.-..+.+.+|++|+|+|-+
T Consensus 181 G~~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n~~~-------~~W~---~~vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 181 GHKTAPEYGRLANEYRKYMKYFDPTIENVVCGSANGANPTD-------PNWE---AVVLEEAYERVDYISLHYYKG 246 (501)
T ss_pred ccccCHHHHHHHHHHHHHHhhcCccccceEEeecCCCCCCc-------hHHH---HHHHHHHhhhcCeEEEEEecC
Confidence 11123455567777777777778754 44455432111111 1000 111123567799999999943
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.60 E-value=0.22 Score=52.43 Aligned_cols=167 Identities=11% Similarity=0.145 Sum_probs=87.0
Q ss_pred hhHHHH-HHHHHHcCCCEEEE-ccccC---C--CCC---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CCC-
Q 016140 68 YKVSDV-FRQAAAAGLSVCRT-WAFSD---G--GYG---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NNY- 135 (394)
Q Consensus 68 ~~~~~d-~~~lk~~G~N~vRi-~~~~~---~--~~~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~- 135 (394)
..+.+. ++.+|++|+|+|=+ +++.. . +|. .+.+++ .|. ..+.|.++|++|+++||+||+|+- ++-
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~-~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTS-RFG--TPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 344444 59999999999999 33321 1 111 112211 222 256899999999999999999973 211
Q ss_pred -C-----CCCChhhhHHHHHHcCC--CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCcc
Q 016140 136 -H-----DFGGRPQYVNWARAAGA--SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 136 -~-----~~gg~~~y~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
. .+.+.+.|..-....+. +.....--+.+|+.++.+.+.++..++. -...|.++---+.++.++-.+++.-
T Consensus 233 ~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~e-y~iDG~R~D~v~~~~~~~~~~~~~~ 311 (613)
T TIGR01515 233 KDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEF-YHIDGLRVDAVASMLYLDYSRDEGE 311 (613)
T ss_pred CccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcCHHHhhhhcccccccc
Confidence 0 00111101000000000 0000000134688888888888888875 1233322222234443333333321
Q ss_pred CC-C----CCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 208 QA-D----YSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 208 ~~-~----~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
.. + ........+++++.+.||+..|+.++..
T Consensus 312 ~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 312 WSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred ccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 10 0 0012346788999999999999876543
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.29 Score=51.68 Aligned_cols=160 Identities=11% Similarity=0.138 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHcCCCEEEEccccC----CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CC--CC
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSD----GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NN--YH 136 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~--~~ 136 (394)
..++.++.+|++|+|+|-+-...+ +.| . .+.+.+ .|. ..+.|.++|+.|+++||+||+|+- ++ +.
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 445556899999999999933211 112 1 111111 222 258899999999999999999973 22 11
Q ss_pred C-----CCChhhh--HHHHHHcCCC--CCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE------e
Q 016140 137 D-----FGGRPQY--VNWARAAGAS--VNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWE------L 201 (394)
Q Consensus 137 ~-----~gg~~~y--~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~we------l 201 (394)
. +.|.+.| .++. .|.. .....-=+.+++.++.+.+-++..++. -++.|.++---.+++-.+ +
T Consensus 246 ~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e-~~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQD-FHVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH-hCCCeEEEeeehheeecccCccccc
Confidence 0 0111111 0000 0000 000000134678888888888887765 234443333223443222 2
Q ss_pred ccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 202 INEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 202 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
-|+..... ......+++++...||+..|+.+++
T Consensus 323 ~~~~gg~~---n~~a~~fl~~ln~~v~~~~p~~~~i 355 (639)
T PRK14706 323 PNIHGGRE---NLEAIAFLKRLNEVTHHMAPGCMMI 355 (639)
T ss_pred ccccCCcc---cHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 22222211 1345678899999999998886543
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.29 Score=52.70 Aligned_cols=162 Identities=10% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCCEEEEcc-ccC---CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CCC--CC
Q 016140 70 VSDVFRQAAAAGLSVCRTWA-FSD---GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NNY--HD 137 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~-~~~---~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~--~~ 137 (394)
+++.++.||++|+|+|=+-. +.. ..| . .+.+.| .|. ..+.|.++|++|+++||+||+|+- ++. ..
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~ 344 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHFPKDA 344 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 33445999999999999943 221 111 1 111222 222 257899999999999999999972 221 10
Q ss_pred -----CCChhhhH--HHHHHcCC--CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccC----
Q 016140 138 -----FGGRPQYV--NWARAAGA--SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINE---- 204 (394)
Q Consensus 138 -----~gg~~~y~--~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NE---- 204 (394)
+.+.+.|. .+. .|. ......-=+.+++.++.+.+.++..+++ -...|.++---..++-++-...
T Consensus 345 ~~~~~~~~~~~y~~~~~~--~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e-~~iDG~R~D~v~~~~~~~~~~~~g~~ 421 (726)
T PRK05402 345 HGLARFDGTALYEHADPR--EGEHPDWGTLIFNYGRNEVRNFLVANALYWLEE-FHIDGLRVDAVASMLYLDYSRKEGEW 421 (726)
T ss_pred cchhccCCCcceeccCCc--CCccCCCCCccccCCCHHHHHHHHHHHHHHHHH-hCCcEEEECCHHHhhhcccccccccc
Confidence 11111110 000 000 0000000145688888888888887765 1223322211111221111110
Q ss_pred -CccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 205 -ARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 205 -p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
|+............+++++.+.||+..|+.++.
T Consensus 422 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~li 455 (726)
T PRK05402 422 IPNIYGGRENLEAIDFLRELNAVVHEEFPGALTI 455 (726)
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 110000011234678899999999999987654
No 53
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=95.41 E-value=0.21 Score=52.05 Aligned_cols=175 Identities=12% Similarity=0.138 Sum_probs=92.4
Q ss_pred eeeccccccccCCC----cchhhHHHHHHHHHHcCCCEEEEccccC----CCCCCccc----CC-CCCChhhHHHHHHHH
Q 016140 51 GFNSYWMMNVASQP----SQRYKVSDVFRQAAAAGLSVCRTWAFSD----GGYGALQQ----SP-GVYNEPVFQGLDFVI 117 (394)
Q Consensus 51 G~N~~~~~~~~~~~----~~~~~~~~d~~~lk~~G~N~vRi~~~~~----~~~~~~~~----~~-g~~~~~~l~~ld~~l 117 (394)
.+++|.....+-.+ ...+..++-+..+|++|+++|-+....+ ++| .+|+ +| ..|. .-+.|.++|
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sW-GYq~~g~yAp~sryG--tPedfk~fV 220 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSW-GYQGTGYYAPTSRYG--TPEDFKALV 220 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCC-CCCcceeccccccCC--CHHHHHHHH
Confidence 55566554443222 3567888999999999999999954332 122 1121 11 0121 136778899
Q ss_pred HHHHHcCCEEEEecCCCCCCCCChhhhHHHHH------------HcCCCCCCCcccccCHHHHHHHHHHHHHHHhccccc
Q 016140 118 SEARKYGIRLILSLSNNYHDFGGRPQYVNWAR------------AAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTI 185 (394)
Q Consensus 118 ~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~ 185 (394)
++|+++||-||||.--+ .++....|..... ....+......++..++.+..+..-+..-++. -++
T Consensus 221 D~aH~~GIgViLD~V~~--HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~-yHi 297 (628)
T COG0296 221 DAAHQAGIGVILDWVPN--HFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE-YHI 297 (628)
T ss_pred HHHHHcCCEEEEEecCC--cCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH-hCC
Confidence 99999999999997321 1111111221110 00011112222333455666655544444443 244
Q ss_pred ccccccCCCcEeEE--------EeccCCccCCCCCchHHHHHHHHHHHHhhccCCCC
Q 016140 186 TRIAYKDDPTIMAW--------ELINEARCQADYSGKTLNNWVQEMASYVKSIDNKH 234 (394)
Q Consensus 186 ~~~~~~~~p~I~~w--------el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 234 (394)
.|.++---++++-. .+-||..... .-....+.+.+...|+..-|..
T Consensus 298 DGlRvDAV~smly~d~~~~~~~~~~n~~ggr~---n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 298 DGLRVDAVASMLYLDYSRAEGEWVPNEYGGRE---NLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred cceeeehhhhhhccchhhhhhcccccccCCcc---cHHHHHHhhhhhhhhcccCCCc
Confidence 55444333444433 2334443321 1245677888888888776665
No 54
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.39 E-value=0.39 Score=51.21 Aligned_cols=163 Identities=11% Similarity=0.129 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccC----CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CC--C
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSD----GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NN--Y 135 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~--~ 135 (394)
...++.++.+|++|+|+|-+-...+ +.| . .+.+.+ .|. ..+.+.++|+.|+++||+||+|+- ++ .
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445568999999999999943211 111 1 112222 121 257899999999999999999983 21 1
Q ss_pred C-----CCCChhhhHHHHHHcCC--CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe-------
Q 016140 136 H-----DFGGRPQYVNWARAAGA--SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL------- 201 (394)
Q Consensus 136 ~-----~~gg~~~y~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel------- 201 (394)
. .+.+...|.......|. ......-=|.+|+.++.+.+-+...+++ -...|.++-.-.+++..+-
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e-yhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH-YHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH-hCceEEEEcCHhHhhhhccccccccc
Confidence 1 01111111100000000 0000000145688888888877777765 2344433322233332222
Q ss_pred -ccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 202 -INEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 202 -~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
-|+-.... ......+++++...|++..|+.++.
T Consensus 426 ~pn~~gg~e---n~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 426 VPNAHGGRE---NLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cccccCCcc---ChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 13221110 1235678999999999999987654
No 55
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=95.34 E-value=0.44 Score=45.55 Aligned_cols=148 Identities=11% Similarity=0.068 Sum_probs=89.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCC---CCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGG---YGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRP 142 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~---~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~ 142 (394)
+.+.+.+.++.|+.+|+|.+-++.-+... .+.+...+|.|. -+.+..+++.|+++||.||+.+.. +|...
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~----pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQT----LGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCC----HHHHH
Confidence 56789999999999999999996532111 122222345666 467888999999999999999854 23322
Q ss_pred hhHHHHHHcCC---CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe-ccCCccCC---------
Q 016140 143 QYVNWARAAGA---SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL-INEARCQA--------- 209 (394)
Q Consensus 143 ~y~~w~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel-~NEp~~~~--------- 209 (394)
....|-..... +.....-..++|++.+..++.+++++.- +. .+.| -+ +-|.....
T Consensus 88 ~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~-s~~~---HIG~DE~~~~g~~~~~~~~~ 155 (301)
T cd06565 88 FILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HP-SKYI---HIGMDEAYDLGRGRSLRKHG 155 (301)
T ss_pred HHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CC-CCeE---EECCCcccccCCCHHHHHhc
Confidence 21111000000 0011222346788888899999999886 44 2221 11 12221110
Q ss_pred -CCCchHHHHHHHHHHHHhhccCC
Q 016140 210 -DYSGKTLNNWVQEMASYVKSIDN 232 (394)
Q Consensus 210 -~~~~~~~~~w~~~~~~~Ir~~dp 232 (394)
....+.+..+++++.+.+++..+
T Consensus 156 ~~~~~~l~~~~~~~v~~~v~~~g~ 179 (301)
T cd06565 156 NLGRGELYLEHLKKVLKIIKKRGP 179 (301)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 01124567889999999999877
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=2 Score=42.65 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=92.2
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEccccCCC---------CCCcccCCCCC-ChhhHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWAFSDGG---------YGALQQSPGVY-NEPVFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~---------~~~~~~~~g~~-~~~~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
.++.++.+.++.++++|+|+|=.=+..+|. |.... ||.. -+..++-|-.++++|+++||.|+.=+.-.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 378999999999999999998773333332 11111 3322 24456778899999999999987532111
Q ss_pred CCCC---CChhhhHHHHHHcCCCC----CCC--cccccC---HHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEec
Q 016140 135 YHDF---GGRPQYVNWARAAGASV----NSD--DEFYTN---AIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELI 202 (394)
Q Consensus 135 ~~~~---gg~~~y~~w~~~~g~~~----~~~--~~~~~~---~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~ 202 (394)
.... -.....+.|.......+ ... ..+|-| |+.++...+.+..+|++ |.-++.=+- +.+
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~--------YdvDGIQfD-d~f 209 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN--------YDVDGIQFD-DYF 209 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC--------CCCCceecc-eee
Confidence 0000 00001111211100000 111 355555 68999999999999988 655431110 000
Q ss_pred cCCc--cCCC---------------CCch--------HHHHHHHHHHHHhhccCCCCEEEecc
Q 016140 203 NEAR--CQAD---------------YSGK--------TLNNWVQEMASYVKSIDNKHLLEIGL 240 (394)
Q Consensus 203 NEp~--~~~~---------------~~~~--------~~~~w~~~~~~~Ir~~dp~~~V~~g~ 240 (394)
==|. +..+ .+.. ...++++++...||+..|+..+++..
T Consensus 210 y~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 210 YYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred cccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 0111 1000 0112 23344678899999999999998865
No 57
>PRK09936 hypothetical protein; Provisional
Probab=95.17 E-value=2 Score=40.30 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
++...|++.++.++..|++++=+ .|..+..++ |... =..|-+.++.|.+.||+|++.|.
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLiv------QWt~yG~~~--fg~~-~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVV------QWTRYGDAD--FGGQ-RGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE------EeeeccCCC--cccc-hHHHHHHHHHHHHcCCEEEEccc
Confidence 46789999999999999999877 222221111 1111 24577889999999999999985
No 58
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.16 E-value=0.034 Score=52.56 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEcc-ccCC-CCCCcccCCC-CCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWA-FSDG-GYGALQQSPG-VYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~-~~~~-~~~~~~~~~g-~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.-+.+-|+.||++|+|+|-+.. +... .+..+.+..- ..++ ...+.|.+++++|+++||+||+|+
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4566779999999999999943 3221 1111221110 0111 246889999999999999999998
No 59
>PLN02960 alpha-amylase
Probab=95.10 E-value=1.3 Score=48.02 Aligned_cols=165 Identities=10% Similarity=0.129 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHcCCCEEEEccccC----CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CC--CC
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSD----GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NN--YH 136 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~--~~ 136 (394)
..++.|+.++++|+|+|-+-...+ ..| . .+.+. ..|. ..+.|.++|+.|+++||.||+|+- ++ ..
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 345669999999999999943221 111 1 11111 1232 257899999999999999999972 22 11
Q ss_pred C------CCChh-hhHHHHHHcCC--CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe--ccCC
Q 016140 137 D------FGGRP-QYVNWARAAGA--SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL--INEA 205 (394)
Q Consensus 137 ~------~gg~~-~y~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel--~NEp 205 (394)
. +.|.+ .|.. ....|. +.....-=|.+++.++.+..-++..++. -++.|.++-.-.+++-.+- .+++
T Consensus 495 ~~~~L~~FDG~~~~Yf~-~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E-yhIDGfR~DAV~sMlY~d~g~~~~~ 572 (897)
T PLN02960 495 EMVGLSLFDGSNDCYFH-SGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE-YRVDGFQFHSLGSMLYTHNGFASFT 572 (897)
T ss_pred cccchhhcCCCccceee-cCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH-HCCCceeecccceeeeeccCccccC
Confidence 0 11110 0100 000000 0000110145688888888888887765 3455655544455543331 1112
Q ss_pred cc---CCC-CCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 206 RC---QAD-YSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 206 ~~---~~~-~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
.. ..+ ........+++.+...|++..|+.+++.
T Consensus 573 G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 573 GDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 10 000 0113467788999999998888776543
No 60
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.01 E-value=0.51 Score=53.11 Aligned_cols=165 Identities=11% Similarity=0.166 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCCEEEEccccC----CCC--CC---cccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CCC--C
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSD----GGY--GA---LQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NNY--H 136 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~----~~~--~~---~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~--~ 136 (394)
..++.++.+|++|+|+|-+-...+ +.| .. +.++ ..|. ..+.|.++|+.|+++||+||+|+- ++. .
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~d 843 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD 843 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 345558999999999999943221 112 11 1121 1232 267899999999999999999973 211 0
Q ss_pred -----CCCChhhhH--HHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCC----
Q 016140 137 -----DFGGRPQYV--NWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEA---- 205 (394)
Q Consensus 137 -----~~gg~~~y~--~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp---- 205 (394)
.+.|...|. +.............--|.+++.++.+.+-+...+++ -+..|.++---.+++-.+-.-++
T Consensus 844 ~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~e-yhiDGfR~Dav~~mly~Dysr~~g~w~ 922 (1224)
T PRK14705 844 SWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDE-FHIDGLRVDAVASMLYLDYSREEGQWR 922 (1224)
T ss_pred hhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCCcEEEeehhhhhhccccccccccc
Confidence 011111110 000000000000010145678888888888888876 23333222222233222222121
Q ss_pred -ccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 206 -RCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 206 -~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
+............+++++...|++..|+.++.
T Consensus 923 pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 923 PNRFGGRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred ccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 11110011235678999999999988876644
No 61
>PLN00196 alpha-amylase; Provisional
Probab=94.86 E-value=0.29 Score=49.17 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcc-ccCCCCCCccc------CCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWA-FSDGGYGALQQ------SPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~-~~~~~~~~~~~------~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
....+.+.++.|+++|+++|=+.. +.......+.+ .+..|. ..+.|..++++|+++||+||+|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHHHHHHCCCEEEEEE
Confidence 345678889999999999998843 22111111111 111221 24679999999999999999997
No 62
>PLN02161 beta-amylase
Probab=94.84 E-value=0.4 Score=48.16 Aligned_cols=132 Identities=14% Similarity=0.280 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEec--CCCCCCCCChh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSL--SNNYHDFGGRP 142 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l--~~~~~~~gg~~ 142 (394)
+...++..|+.+|+.|+.-|=+-+. |-.+|. .|++|| |....++++++++.||++.+.+ |.--.+.|+..
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVW----WGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 4567899999999999999988433 223454 588999 9999999999999999988776 32101122211
Q ss_pred --hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHH
Q 016140 143 --QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWV 220 (394)
Q Consensus 143 --~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~ 220 (394)
..|.|+..-|. ..+..||+|..- .++.. -+.+.+-|+|.......-+.+.+++
T Consensus 188 ~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 188 GISLPLWIREIGD--VNKDIYYRDKNG----------------------FSNND-YLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred CccCCHHHHhhhc--cCCCceEEcCCC----------------------Ccccc-eeeeecccchhcCCCCHHHHHHHHH
Confidence 25667654332 234567776311 12333 4568889999865322123455665
Q ss_pred HHHHHHhhc
Q 016140 221 QEMASYVKS 229 (394)
Q Consensus 221 ~~~~~~Ir~ 229 (394)
+......+.
T Consensus 243 ~SFr~~F~~ 251 (531)
T PLN02161 243 LSFSTKFEP 251 (531)
T ss_pred HHHHHHHHH
Confidence 555444444
No 63
>PLN02801 beta-amylase
Probab=94.83 E-value=0.32 Score=48.88 Aligned_cols=130 Identities=14% Similarity=0.316 Sum_probs=83.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCh---
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGR--- 141 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~--- 141 (394)
+...++..|+.+|+.|+.-|=+-+. |-.+|. .|++|| |+...++++++++.||++.+.+.-+ -.||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVW----WGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFH--QCGGNVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4678999999999999999988443 223454 488999 9999999999999999997766321 13332
Q ss_pred --h-hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 142 --P-QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 142 --~-~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
. ..+.|+..-|. ..+..||+|..- .++. --+.+.+-|+|.......-+.+.+
T Consensus 106 ~~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~D 160 (517)
T PLN02801 106 AVNIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NRNK-EYLSIGVDNLPLFHGRTAVEMYSD 160 (517)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------CcCc-ceeeeccCcccccCCCCHHHHHHH
Confidence 0 14567654332 234566776311 1222 245788899987653221244556
Q ss_pred HHHHHHHHhhc
Q 016140 219 WVQEMASYVKS 229 (394)
Q Consensus 219 w~~~~~~~Ir~ 229 (394)
+++........
T Consensus 161 fm~SFr~~F~~ 171 (517)
T PLN02801 161 YMKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 64
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.79 E-value=1.9 Score=41.68 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=87.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCC-----CCcc--------------------cCCCCCChhhHHHHHHHHHHH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGY-----GALQ--------------------QSPGVYNEPVFQGLDFVISEA 120 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~-----~~~~--------------------~~~g~~~~~~l~~ld~~l~~a 120 (394)
+.+.+++.++.|+..++|++-+++.+.-++ +.+. ...|.|. -+.+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 467899999999999999999965431111 1100 0122343 57788999999
Q ss_pred HHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCC-----CCCCcccccCHHHHHHHHHHHHHHHhcccccccccccC-CC
Q 016140 121 RKYGIRLILSLSNNYHDFGGRPQYVNWARAAGAS-----VNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKD-DP 194 (394)
Q Consensus 121 ~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~-~p 194 (394)
+++||.||+.+.. .|.......+...-+.. ......-.++|++.+..++.+..++.- |.. .+
T Consensus 92 ~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~~~~ 159 (326)
T cd06564 92 KDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNPKSD 159 (326)
T ss_pred HHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCCCCC
Confidence 9999999998853 23322211111111110 011112246788888888999999887 552 33
Q ss_pred cEeEEEe-ccCCccCCCCCchHHHHHHHHHHHHhhccC
Q 016140 195 TIMAWEL-INEARCQADYSGKTLNNWVQEMASYVKSID 231 (394)
Q Consensus 195 ~I~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 231 (394)
.| -| +-|.... ....+.+..+++++.+.|++.+
T Consensus 160 ~~---HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~g 193 (326)
T cd06564 160 TV---HIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKG 193 (326)
T ss_pred EE---Eecccccccc-CccHHHHHHHHHHHHHHHHHcC
Confidence 22 22 2222221 1123567788999999999874
No 65
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=94.75 E-value=1.5 Score=42.63 Aligned_cols=222 Identities=19% Similarity=0.246 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHHcC---CEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCH--HHHHHHHHHHHHHHhc
Q 016140 107 EPVFQGLDFVISEARKYG---IRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNA--IVKGYYKNHVKKVLTR 181 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~G---i~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~lv~r 181 (394)
++.++.=.-++..|.++. |+++-...+. +.|.+..|.... ...+-.++ .+.+.+.++.-+..+.
T Consensus 173 ~ED~q~KIP~ik~A~~~~~~~lklfAsPWsa----------PgWlKttg~m~G-~G~l~g~~~d~yhqtya~YfvkFlea 241 (518)
T KOG2566|consen 173 EEDLKLKIPFIKKAQKYNQGNLKLFASPWSA----------PGWLKTTGRMNG-KGALLGDPGDIYHQTYARYFVKFLEA 241 (518)
T ss_pred hhhheeecHHHHHHHHhcCCCceEEecCCCC----------Cceeeecccccc-cccccCCCCchhHHHHHHHHHHHHHH
Confidence 344544445666666554 7777665432 124333221110 11111222 3344444444444444
Q ss_pred ccccccccccCCCcEeEEEe--ccCCccCCCC---------CchHHHHHHHH-HHHHhhccCC--CCEEEeccccccCCC
Q 016140 182 INTITRIAYKDDPTIMAWEL--INEARCQADY---------SGKTLNNWVQE-MASYVKSIDN--KHLLEIGLEGFYGDS 247 (394)
Q Consensus 182 ~~~~~~~~~~~~p~I~~wel--~NEp~~~~~~---------~~~~~~~w~~~-~~~~Ir~~dp--~~~V~~g~~g~~~~~ 247 (394)
|..+. |.-|.| .|||....+. ..+.-+++++. +-.++++... +.-|++-..+-..
T Consensus 242 --------Y~~~g-i~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~-- 310 (518)
T KOG2566|consen 242 --------YAKHG-IQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGL-- 310 (518)
T ss_pred --------HHhcC-ceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccC--
Confidence 66554 555755 8999876542 23445566554 3445554322 2233332211000
Q ss_pred CCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCC
Q 016140 248 IPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSK 327 (394)
Q Consensus 248 ~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~ 327 (394)
.|.+ +. - -+.-..+...++=+.+|.|.+...+.. -|.+.. ++..++=++=+|-+....
T Consensus 311 LP~W----ad---t-vlnDpeAakYv~GIaVHwY~df~~pa~-----------~L~eTh---~~hP~~fifgTEAc~Gy~ 368 (518)
T KOG2566|consen 311 LPHW----AD---T-VLNDPEAAKYVHGIAVHWYQDFLEPAK-----------HLDETH---RKHPNTFIFGTEACAGYK 368 (518)
T ss_pred CCcc----ch---h-hccChhhhhhccceEEEeeccccChhh-----------hhhhHH---hhCCCeEEEeehhccccc
Confidence 1111 00 0 000113455677789999976321110 121111 122555577778766543
Q ss_pred C---CCC-ChHHHHHHHHHHHHHHHHHHhcCCccccccccccc--ccCCCCCCCCcE
Q 016140 328 E---AGF-SINVRDSFLNTIYMNIYNLARNGGAIGGGMVWQLM--AEGMQPYFDGYE 378 (394)
Q Consensus 328 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~--~~g~~~w~~g~~ 378 (394)
. ..+ +=+...+|-.++++.+-+. +.||.=|++. ++|.++|-++|.
T Consensus 369 ~~d~v~~Gswdrae~yasdii~dlnn~------vtGWtdwNl~Ld~~GGP~wv~nfv 419 (518)
T KOG2566|consen 369 SKDGVDLGSWDRAEQYASDIITDLNNH------VTGWTDWNLILDAQGGPNWVSNFV 419 (518)
T ss_pred cccCccccchhhHHHHHHHHHHhhhhh------ccceeeeeeEecCcCCchhHhccC
Confidence 2 111 2234556767777655442 6899999997 678899988876
No 66
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=94.71 E-value=1.1 Score=42.77 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=87.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCC-------CCcc---------cCCCCCChhhHHHHHHHHHHHHHcCCEEEE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGY-------GALQ---------QSPGVYNEPVFQGLDFVISEARKYGIRLIL 129 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~-------~~~~---------~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii 129 (394)
+.+.+++.++.|+..++|++.+++.++-+| |.+. +..|.|. -+.+..+++.|+++||.||+
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEEE
Confidence 567899999999999999999976543223 2221 1123454 47788999999999999999
Q ss_pred ecCCCCCCCCChhhhHHHHHHc------CCCC--CCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe
Q 016140 130 SLSNNYHDFGGRPQYVNWARAA------GASV--NSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL 201 (394)
Q Consensus 130 ~l~~~~~~~gg~~~y~~w~~~~------g~~~--~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel 201 (394)
.+.. .|.......+...- +... ....-..++|++.+..++.++.++.- |.+ +.| -|
T Consensus 91 EiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~~-~~i---Hi 154 (303)
T cd02742 91 EIDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FPD-RYL---HI 154 (303)
T ss_pred eccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CCC-CeE---Ee
Confidence 9853 23222111110000 0000 01112245778888888888888886 532 322 22
Q ss_pred -ccCCccCCCCCchHHHHHHHHHHHHhhccC
Q 016140 202 -INEARCQADYSGKTLNNWVQEMASYVKSID 231 (394)
Q Consensus 202 -~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 231 (394)
+-|..... ...+....+++++.+.+++.+
T Consensus 155 GgDE~~~~~-~~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 155 GGDEAHFKQ-DRKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred cceecCCCC-CHHHHHHHHHHHHHHHHHHcC
Confidence 22332211 112446677899999999876
No 67
>PLN02803 beta-amylase
Probab=94.71 E-value=0.31 Score=49.27 Aligned_cols=130 Identities=15% Similarity=0.260 Sum_probs=82.2
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCh---
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGR--- 141 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~--- 141 (394)
+...++..|+.+|+.|+.-|=+-+. |-.+|. .|+.|| |....++++++++.||++.+.+.-+ -.||.
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAW----WGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFH--QCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578999999999999999988433 223454 488999 9999999999999999998776321 13432
Q ss_pred --h-hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 142 --P-QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 142 --~-~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
. ..|.|+..-|. ..+..||+|..- .++.. -+.+.+-|+|.......-+.+.+
T Consensus 176 ~~~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~D 230 (548)
T PLN02803 176 SCSIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRNPE-YISLGCDSLPVLRGRTPIQVYSD 230 (548)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------Ccccc-eeccccccchhccCCCHHHHHHH
Confidence 0 24567653221 234456766311 12222 35678888887643221244566
Q ss_pred HHHHHHHHhhc
Q 016140 219 WVQEMASYVKS 229 (394)
Q Consensus 219 w~~~~~~~Ir~ 229 (394)
|++......+.
T Consensus 231 fm~SFr~~F~~ 241 (548)
T PLN02803 231 YMRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHHH
Confidence 66555555444
No 68
>PLN02905 beta-amylase
Probab=94.57 E-value=0.38 Score=49.44 Aligned_cols=130 Identities=14% Similarity=0.291 Sum_probs=83.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChh--
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRP-- 142 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~-- 142 (394)
+...++..|+.+|+.|+.-|=+-+.+ -.++. .|+.|| |....++++++++.||++.+.+.-+ -.||.-
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWW----GiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFH--qCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWW----GIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFH--ECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 56778999999999999999884432 23454 588999 9999999999999999988776321 134420
Q ss_pred ----hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 143 ----QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 143 ----~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
..|.|+..-|. ..+..||+|..- .++... +.|.+-|+|-......-+.+.+
T Consensus 355 ~~~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNPEC-LSWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------CccCce-eeeecccccccCCCCHHHHHHH
Confidence 24567653221 233457776311 233333 4589999997643222244556
Q ss_pred HHHHHHHHhhc
Q 016140 219 WVQEMASYVKS 229 (394)
Q Consensus 219 w~~~~~~~Ir~ 229 (394)
|++........
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 66555555554
No 69
>PLN02705 beta-amylase
Probab=94.54 E-value=0.37 Score=49.37 Aligned_cols=130 Identities=13% Similarity=0.315 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCh---
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGR--- 141 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~--- 141 (394)
+...++..|+.||+.|+.-|=+-+. |-.+|. .|+.|| |....++++++++.||++.+.+.-+ -.||.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFH--qCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCW----WGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFH--EYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEee--ccCCCCCC
Confidence 5688999999999999999988433 223454 488998 9999999999999999987766321 13332
Q ss_pred --h-hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 142 --P-QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 142 --~-~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
. ..+.|+..-|. ..+..||+|..- .++.. -+.|.+-++|.......-+.+.+
T Consensus 337 ~~~IPLP~WV~e~g~--~nPDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~D 391 (681)
T PLN02705 337 NVMISLPQWVLEIGK--DNQDIFFTDREG----------------------RRNTE-CLSWSIDKERVLKGRTGIEVYFD 391 (681)
T ss_pred cccccCCHHHHHhcc--cCCCceeecCCC----------------------Ccccc-eeeeecCcccccCCCCHHHHHHH
Confidence 0 24567654332 133467776311 12333 34689999996542222244566
Q ss_pred HHHHHHHHhhc
Q 016140 219 WVQEMASYVKS 229 (394)
Q Consensus 219 w~~~~~~~Ir~ 229 (394)
|++........
T Consensus 392 FM~SFr~~F~~ 402 (681)
T PLN02705 392 FMRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHHH
Confidence 66655555555
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.47 E-value=0.15 Score=42.48 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCC---C-Ccc-cCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGY---G-ALQ-QSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~---~-~~~-~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
++.++.+|+.|+|+|-++.-+.+.| | .+. ..|+. + .+.|-.++++|++.||+|++-+.-.|+.. -....|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L---~-~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL---K-RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC---C-cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhCC
Confidence 5678899999999999966432222 1 121 12331 2 47788999999999999998874333211 112345
Q ss_pred HHHHH--cCCCCC----CCcccc---cCHHHHHHHHHHHHHHHhc
Q 016140 146 NWARA--AGASVN----SDDEFY---TNAIVKGYYKNHVKKVLTR 181 (394)
Q Consensus 146 ~w~~~--~g~~~~----~~~~~~---~~~~~~~~~~~~~~~lv~r 181 (394)
.|..- .|.+.. ....++ -+..+++.....++.+++|
T Consensus 78 eW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred ceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 56431 243210 001122 2446778899999999998
No 71
>PLN00197 beta-amylase; Provisional
Probab=94.31 E-value=0.45 Score=48.27 Aligned_cols=130 Identities=16% Similarity=0.270 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCh---
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGR--- 141 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~--- 141 (394)
++..++..|+.+|+.|+.-|=+-+.+ -.++. .|++|| |....++++++++.||++.+.+.-+ -.||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWW----GiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFH--qCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWW----GLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFH--QCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 45779999999999999999884332 23454 588999 9999999999999999988776321 13332
Q ss_pred --h-hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHH
Q 016140 142 --P-QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNN 218 (394)
Q Consensus 142 --~-~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~ 218 (394)
. ..|.|+..-|. ..+..||+|..- .++.. -+.+.+-|+|-......-+.+.+
T Consensus 196 ~~~IpLP~WV~~~g~--~dpDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTpiq~Y~D 250 (573)
T PLN00197 196 SCTIPLPKWVVEEVD--KDPDLAYTDQWG----------------------RRNYE-YVSLGCDTLPVLKGRTPVQCYAD 250 (573)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------Ccccc-eeccccccccccCCCCHHHHHHH
Confidence 0 24567654331 234567776311 12222 35678888887543222234555
Q ss_pred HHHHHHHHhhc
Q 016140 219 WVQEMASYVKS 229 (394)
Q Consensus 219 w~~~~~~~Ir~ 229 (394)
|++........
T Consensus 251 FM~SFr~~F~~ 261 (573)
T PLN00197 251 FMRAFRDNFKH 261 (573)
T ss_pred HHHHHHHHHHH
Confidence 65554444444
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.96 E-value=2.2 Score=45.74 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCCEEEEcc-ccC---CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CCCC--
Q 016140 69 KVSDVFRQAAAAGLSVCRTWA-FSD---GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NNYH-- 136 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~-~~~---~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~~-- 136 (394)
.+++-|+.+|++|+|+|=+-. +.. +.| . .+.+.+ .|. ..+.|.++|+.|+++||+||+|+- ++-.
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 356679999999999999943 221 111 1 111111 121 247789999999999999999973 2110
Q ss_pred C------CCCh-hhhHHHHHHcCCC--CCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE------e
Q 016140 137 D------FGGR-PQYVNWARAAGAS--VNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWE------L 201 (394)
Q Consensus 137 ~------~gg~-~~y~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~we------l 201 (394)
. +.+. ..|... ...|.. .....-=+.+++.++.+.+.++..++. -++.|.++-.-.+++-.+ .
T Consensus 329 ~~~gl~~fDg~~~~Yf~~-~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~e-y~IDGfRfDaV~smlY~~hg~~~~f 406 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHS-GPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEE-YKFDGFRFDGVTSMLYHHHGLQMAF 406 (758)
T ss_pred ccccccccCCCCcccccc-CCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHH-hCcccccccchhhhhccccCccccc
Confidence 0 0010 011000 000000 000001134678888888888877764 234454443334443211 1
Q ss_pred c---cCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 202 I---NEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 202 ~---NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
. ||..+. ........+++.+...|++..|+.+++
T Consensus 407 ~~~~~~~~g~--~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 407 TGNYNEYFGM--ATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred ccCcccccCC--ccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 1 221111 011345678889999999999987644
No 73
>PLN02361 alpha-amylase
Probab=93.85 E-value=0.37 Score=47.91 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred ECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCC-CCCCcccCC-CCCCh--hhHHHHHHHH
Q 016140 42 LNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDG-GYGALQQSP-GVYNE--PVFQGLDFVI 117 (394)
Q Consensus 42 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~-~~~~~~~~~-g~~~~--~~l~~ld~~l 117 (394)
-+|..+.+.|+|. ..... ..-..+.+.++.|+++|+++|=+...... ....+.+.. -..++ ...+.|..++
T Consensus 8 ~~~~~v~lQ~F~W--~~~~~---~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li 82 (401)
T PLN02361 8 RNGREILLQAFNW--ESHKH---DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLL 82 (401)
T ss_pred cCCCcEEEEEEec--cCCcc---HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 3578888999993 21110 12356788899999999999988442211 111111110 00111 1257899999
Q ss_pred HHHHHcCCEEEEec
Q 016140 118 SEARKYGIRLILSL 131 (394)
Q Consensus 118 ~~a~~~Gi~vii~l 131 (394)
+.|+++||+||+|+
T Consensus 83 ~~~h~~gi~vi~D~ 96 (401)
T PLN02361 83 RKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHcCCEEEEEE
Confidence 99999999999998
No 74
>PRK12313 glycogen branching enzyme; Provisional
Probab=93.21 E-value=0.31 Score=51.60 Aligned_cols=160 Identities=11% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCEEEEcc-ccC---CCC--C---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CCC--C-
Q 016140 70 VSDVFRQAAAAGLSVCRTWA-FSD---GGY--G---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NNY--H- 136 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~-~~~---~~~--~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~~--~- 136 (394)
+++.|+.||++|+|+|=+-. +.. +.| . .+.+.| .|. ..+.|.++|+.|+++||+||+|+- ++. .
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 34446999999999999833 221 111 1 111211 222 257899999999999999999972 221 0
Q ss_pred ----CCCChhhhHHHHHH-cCCC--CCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe-------c
Q 016140 137 ----DFGGRPQYVNWARA-AGAS--VNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL-------I 202 (394)
Q Consensus 137 ----~~gg~~~y~~w~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel-------~ 202 (394)
.+.+.+.|. +... .+.. .....-=+.+|+.++.+.+.++..++. -...|.++---++++..+- .
T Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~-~~iDG~R~D~~~~~~~~d~~~~~~~~~ 327 (633)
T PRK12313 250 DGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDE-YHLDGLRVDAVSNMLYLDYDEEGEWTP 327 (633)
T ss_pred ccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcChhhhhhcccccccCcCC
Confidence 011100110 0000 0000 000001135688888888888887765 1233322221122221111 1
Q ss_pred cCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 203 NEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 203 NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
|+.... .. .....+++++...||+..|+.++.
T Consensus 328 ~~~~~~--~~-~~~~~fl~~~~~~v~~~~p~~~li 359 (633)
T PRK12313 328 NKYGGR--EN-LEAIYFLQKLNEVVYLEHPDVLMI 359 (633)
T ss_pred cccCCC--CC-cHHHHHHHHHHHHHHHHCCCeEEE
Confidence 111110 01 134678899999999999986543
No 75
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=92.59 E-value=3 Score=40.36 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCC-------CCccc----------CCCCCChhhHHHHHHHHHHHHHcCCEEE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGY-------GALQQ----------SPGVYNEPVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~-------~~~~~----------~~g~~~~~~l~~ld~~l~~a~~~Gi~vi 128 (394)
+.+.+.+.++.|+..++|++.+++.++-+| |.+.. ..|.|. -+.+..+++.|+++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 568899999999999999999976543233 22211 112344 5778899999999999999
Q ss_pred EecCCCCCCCCChh----hhHHHHHHcCCCC--------CCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 016140 129 LSLSNNYHDFGGRP----QYVNWARAAGASV--------NSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTI 196 (394)
Q Consensus 129 i~l~~~~~~~gg~~----~y~~w~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I 196 (394)
+.+... |... .|+.-.. .+... .......++|++.+..++.++.++.- +.+ +.|
T Consensus 93 PEiD~P----GH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~~-~~i 158 (329)
T cd06568 93 PEIDMP----GHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TPG-PYI 158 (329)
T ss_pred EecCCc----HHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CCC-CeE
Confidence 998432 2221 1221111 11000 00111245688888888888888875 432 322
Q ss_pred eEEEe-ccCCccCCCCCchHHHHHHHHHHHHhhccC
Q 016140 197 MAWEL-INEARCQADYSGKTLNNWVQEMASYVKSID 231 (394)
Q Consensus 197 ~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 231 (394)
-| +-|.... ..+.+..+++++.+.+++.+
T Consensus 159 ---HiGgDE~~~~---~~~~~~~f~~~~~~~v~~~G 188 (329)
T cd06568 159 ---HIGGDEAHST---PHDDYAYFVNRVRAIVAKYG 188 (329)
T ss_pred ---EEecccCCCC---chHHHHHHHHHHHHHHHHCC
Confidence 23 2333322 13456778899999988764
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.46 E-value=0.45 Score=49.37 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=80.6
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEccccC--C----CCC---CcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC-CC
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWAFSD--G----GYG---ALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS-NN 134 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~~~~--~----~~~---~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~-~~ 134 (394)
++-..+.+.|+.||++|+|+|-+....+ + +|. .+.+.+ .|. ..+.|.++|+.|+++||+||+|+- ++
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G--~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYG--GPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 3556677779999999999999943211 0 111 112221 222 257899999999999999999973 22
Q ss_pred CCCCCC-hhhhHHHHHHc-CCCCCCCcccccCH---HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCC
Q 016140 135 YHDFGG-RPQYVNWARAA-GASVNSDDEFYTNA---IVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQA 209 (394)
Q Consensus 135 ~~~~gg-~~~y~~w~~~~-g~~~~~~~~~~~~~---~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~ 209 (394)
-...+. .+.+..|.... ..+.....+ +.++ .+++.+.+.++..++. |+=+-- =+++......
T Consensus 185 ~~~~~~~~~~~~~y~~~~~~~~wg~~~n-~~~~~~~~vr~~i~~~~~~W~~e--------~~iDGf--R~D~~~~~~~-- 251 (542)
T TIGR02402 185 FGPEGNYLPRYAPYFTDRYSTPWGAAIN-FDGPGSDEVRRYILDNALYWLRE--------YHFDGL--RLDAVHAIAD-- 251 (542)
T ss_pred CCCccccccccCccccCCCCCCCCCccc-cCCCcHHHHHHHHHHHHHHHHHH--------hCCcEE--EEeCHHHhcc--
Confidence 110000 00111011000 000001111 3345 7777777777777765 432210 0122211111
Q ss_pred CCCchHHHHHHHHHHHHhhccCCC--CEEEec
Q 016140 210 DYSGKTLNNWVQEMASYVKSIDNK--HLLEIG 239 (394)
Q Consensus 210 ~~~~~~~~~w~~~~~~~Ir~~dp~--~~V~~g 239 (394)
.....+++++.+.+|++.|+ ..+++|
T Consensus 252 ----~~~~~~l~~~~~~~~~~~p~~~~~~li~ 279 (542)
T TIGR02402 252 ----TSAKHILEELAREVHELAAELRPVHLIA 279 (542)
T ss_pred ----ccHHHHHHHHHHHHHHHCCCCceEEEEE
Confidence 01246778888888888877 244454
No 77
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=92.40 E-value=0.73 Score=47.10 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEcc-ccC--CC-CCCcccCC----------CCCChh--hHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWA-FSD--GG-YGALQQSP----------GVYNEP--VFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~-~~~--~~-~~~~~~~~----------g~~~~~--~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
..+.+-++.|+++|+++|=+-. +.. +. +..+.+.. |..|+. ..+.|.+++++|+++||+||+|+
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577779999999999998833 321 10 11122111 122222 36789999999999999999998
No 78
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=92.14 E-value=0.5 Score=49.09 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEcc-ccCCC-CCCcccCC-CCCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWA-FSDGG-YGALQQSP-GVYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~-~~~~~-~~~~~~~~-g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
++-..+.+-|+.++++|+|+|=+-. +.... ...+.+.. -..++ ...+.+.++++.|+++||+||+|+
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4667788889999999999998833 32211 00111110 01122 135889999999999999999998
No 79
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=92.12 E-value=0.54 Score=48.83 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcc-ccCCCC-CCcccCC-CCCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWA-FSDGGY-GALQQSP-GVYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~-~~~~~~-~~~~~~~-g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+...+.+-|+.++++|+|+|=+-. +..... ..+.+.. -.+++ ...+.|.+++++|+++||+||+|+
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 556788889999999999999833 221100 0111100 01111 135889999999999999999997
No 80
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.07 E-value=5.6 Score=39.00 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCC-------Cccc---------------------CCCCCChhhHHHHHHHH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYG-------ALQQ---------------------SPGVYNEPVFQGLDFVI 117 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~-------~~~~---------------------~~g~~~~~~l~~ld~~l 117 (394)
+.+.+.+.++.|+..++|++.+++.++-+|+ .+.. ..|.|. -+.+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 4678999999999999999999765432232 1110 012333 57889999
Q ss_pred HHHHHcCCEEEEecCCCCCCCCChhhhHHHHHH---cCCC--------CCCCcccccCHHHHHHHHHHHHHHHhc
Q 016140 118 SEARKYGIRLILSLSNNYHDFGGRPQYVNWARA---AGAS--------VNSDDEFYTNAIVKGYYKNHVKKVLTR 181 (394)
Q Consensus 118 ~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~---~g~~--------~~~~~~~~~~~~~~~~~~~~~~~lv~r 181 (394)
+.|+++||.||+.+.. .|.......+... .+.. .....--..+|++.+..++.++.+++-
T Consensus 93 ~yA~~rgI~VIPEID~----PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 93 AYAAERGITVIPEIDM----PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHHcCCEEEEecCC----chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 9999999999999843 2332211111000 0000 001111235678888888888888875
No 81
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.72 E-value=0.64 Score=48.37 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=43.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccC-C----CCCC---cccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSD-G----GYGA---LQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~-~----~~~~---~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-..+.+.++.++++|+++|=+-.+.. . +|.. +...| .| ...+.|++++++|+++||+||+|+
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~--Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TY--GTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-cc--CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 556677889999999999998833211 1 1110 01111 11 135789999999999999999998
No 82
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.26 E-value=6 Score=38.66 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCC-------CcccCCCCCChh---hHHHHHHHHHHHHHcCCEEEEecCCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYG-------ALQQSPGVYNEP---VFQGLDFVISEARKYGIRLILSLSNNY 135 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~-------~~~~~~g~~~~~---~l~~ld~~l~~a~~~Gi~vii~l~~~~ 135 (394)
+.+.+++.++.|+...+|++.+++.++-+|+ .+. ..|.|.+. .-+.+..+++.|+++||.||+.+...
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt-~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P- 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELS-KKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP- 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhh-hccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc-
Confidence 4578999999999999999999765432342 121 11222111 25788899999999999999988432
Q ss_pred CCCCChhh----hHHHHHHc-------CCCCCCCcccccCHHHHHHHHHHHHHHHhc
Q 016140 136 HDFGGRPQ----YVNWARAA-------GASVNSDDEFYTNAIVKGYYKNHVKKVLTR 181 (394)
Q Consensus 136 ~~~gg~~~----y~~w~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r 181 (394)
|.... |+.-.... +........-.++|++.+..++.+..++.-
T Consensus 94 ---GH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 94 ---GHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred ---hhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 22211 11100000 000000111234678888888888888876
No 83
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=91.18 E-value=0.7 Score=52.20 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=57.5
Q ss_pred CeEEECC-eEEEEEeeeccc-cccccCCCcchhhHHHHHHHHHHcCCCEEEEcc-ccCCC----CC---CcccCCCCC-C
Q 016140 38 TQFVLNG-SPFLFNGFNSYW-MMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWA-FSDGG----YG---ALQQSPGVY-N 106 (394)
Q Consensus 38 ~~~~~~G-~~~~~~G~N~~~-~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~-~~~~~----~~---~~~~~~g~~-~ 106 (394)
-.|.+|| +...+-|++..- .+... +.-..|++.|+.++++|+|+|-+.. +..|. |. -++-.|--+ .
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~m---G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~ 179 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLL---GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQ 179 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhc---CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhccc
Confidence 3456677 777778888421 01000 1346799999999999999999943 32221 11 011111111 0
Q ss_pred hhhHHHHHHHHHHHHHc-CCEEEEec
Q 016140 107 EPVFQGLDFVISEARKY-GIRLILSL 131 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~-Gi~vii~l 131 (394)
+...+.+.++++.+++. ||++|+|+
T Consensus 180 ~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 180 KDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred CCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 13457899999999995 99999998
No 84
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.17 E-value=5.2 Score=39.36 Aligned_cols=247 Identities=16% Similarity=0.183 Sum_probs=123.4
Q ss_pred HHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCC
Q 016140 77 AAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVN 156 (394)
Q Consensus 77 lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~ 156 (394)
-++.|+|-||.+..... .++ .. .|+ +.+.|++++...++|+-.+. +.-.|........ .|- +
T Consensus 14 ~~Ei~v~yi~~~~v~h~---~~q-~~-~~~---~t~~d~i~d~~~~~~~~~ie-~~l~~~~l~~~~~--~wq---~---- 75 (428)
T COG3664 14 DDEIQVNYIRRHGVWHV---NAQ-KL-FYP---FTYIDEIIDTLLDLGLDLIE-LFLIWNNLNTKEH--QWQ---L---- 75 (428)
T ss_pred hhhhceeeehhcceeee---eec-cc-cCC---hHHHHHHHHHHHHhccHHHH-Hhhcccchhhhhh--hcc---c----
Confidence 35799999988543221 111 11 233 56788889988888844332 2222332211111 121 1
Q ss_pred CCcccccCHHHHHHHHHHHHHHHhcccccccccccC-CCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCE
Q 016140 157 SDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKD-DPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHL 235 (394)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~-~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~ 235 (394)
+-..+...++.+..++.++..| |+- .-....+...|||+...+ ...+.+.+..+ .|+..|...
T Consensus 76 ---n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~~~---a~~~~p~i~ 139 (428)
T COG3664 76 ---NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYDAT---ARQRAPSIQ 139 (428)
T ss_pred ---ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHHhh---hhccCccee
Confidence 0111234788899999999998 552 234566799999998732 23333333333 345555544
Q ss_pred EEeccccccCCCCCCccCCCCCCCccccchhhcCCCCccEEeeecCCCCCCCCCChh--H--------HHHHHHHHHHHH
Q 016140 236 LEIGLEGFYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDY--A--------QMQFVQKWLASH 305 (394)
Q Consensus 236 V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~--~--------~~~~~~~~l~~~ 305 (394)
+|.+ + ++... ..+. . ..+.+|+++.|.|...-..-+++. . .++ ..+.+.+.
T Consensus 140 --vg~~--w----------~~e~l--~~~~-k-~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~-~~r~~~d~ 200 (428)
T COG3664 140 --VGGS--W----------NTERL--HEFL-K-KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLE-DLRGLKDL 200 (428)
T ss_pred --eccc--c----------CcHHH--hhhh-h-ccCcccceeecccccccccccCCCchhhhhhhhhhhhh-HHHHHHHH
Confidence 3321 1 12100 0111 1 356799999999954221111110 0 011 12234444
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHH--HHHHHHHHHhcCCccccccccccccc----CC--CCCCCCc
Q 016140 306 WTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNT--IYMNIYNLARNGGAIGGGMVWQLMAE----GM--QPYFDGY 377 (394)
Q Consensus 306 ~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~W~~~~~----g~--~~w~~g~ 377 (394)
++... .++|+++.||...+..- ...-+.|++. +.+.+.+. +..+.+--+|.+.+- |- -..-+|+
T Consensus 201 i~~~~--~~~pl~~~~wntlt~~~---~~~n~sy~raa~i~~~Lr~~---g~~v~a~~yW~~sdl~e~~g~~~~~~~~gf 272 (428)
T COG3664 201 IQHHS--LGLPLLLTNWNTLTGPR---EPTNGSYVRAAYIMRLLREA---GSPVDAFGYWTNSDLHEEHGPPEAPFVGGF 272 (428)
T ss_pred HHhcc--CCCcceeecccccCCCc---cccCceeehHHHHHHHHHhc---CChhhhhhhhhcccccccCCCcccccccce
Confidence 43332 68999999999876531 1111233331 22222221 223456667776532 21 3335677
Q ss_pred EEEcCCC
Q 016140 378 EIVLSQN 384 (394)
Q Consensus 378 ~~~~~~~ 384 (394)
++...-+
T Consensus 273 el~~~~~ 279 (428)
T COG3664 273 ELFAPYG 279 (428)
T ss_pred eeecccc
Confidence 7666433
No 85
>PRK09505 malS alpha-amylase; Reviewed
Probab=91.11 E-value=0.8 Score=48.72 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEc-cccC--C-------------CCCCcccCC-CCCCh--hhHHHHHHHHHHHHHcCCE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTW-AFSD--G-------------GYGALQQSP-GVYNE--PVFQGLDFVISEARKYGIR 126 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~-~~~~--~-------------~~~~~~~~~-g~~~~--~~l~~ld~~l~~a~~~Gi~ 126 (394)
+-.-+.+-|+.|+++|+|+|=+- ++.. + .+..+.+.+ ...|+ ...+.|..+++.|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44557778999999999999883 2221 0 011111110 11122 1468899999999999999
Q ss_pred EEEec
Q 016140 127 LILSL 131 (394)
Q Consensus 127 vii~l 131 (394)
||+|+
T Consensus 308 VilD~ 312 (683)
T PRK09505 308 ILFDV 312 (683)
T ss_pred EEEEE
Confidence 99997
No 86
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=90.93 E-value=1 Score=43.73 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCC----c--ccCCCCCCh------hhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGA----L--QQSPGVYNE------PVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~----~--~~~~g~~~~------~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+.+.+.++.|+..++|++-+++.++-+|+. + ....|.+.. =.-+.+..+++.|+++||.||+.+..
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~ 95 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDT 95 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccC
Confidence 56789999999999999999997654423321 1 001121111 11478899999999999999998843
Q ss_pred CCCCCCChhhhHHHHHHcCCC---------C----C--CCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeE
Q 016140 134 NYHDFGGRPQYVNWARAAGAS---------V----N--SDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMA 198 (394)
Q Consensus 134 ~~~~~gg~~~y~~w~~~~g~~---------~----~--~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~ 198 (394)
+|.......+...-+.. . . ...-..++|++.+...+.++++++- +. .+.|
T Consensus 96 ----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~~i-- 160 (351)
T PF00728_consen 96 ----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SKYI-- 160 (351)
T ss_dssp ----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SSEE--
T ss_pred ----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CCeE--
Confidence 23332222221111110 0 0 0112245688888899999998886 55 3332
Q ss_pred EEe-ccCCccC--CCC-------------Cc-hHHHHHHHHHHHHhhccCCC
Q 016140 199 WEL-INEARCQ--ADY-------------SG-KTLNNWVQEMASYVKSIDNK 233 (394)
Q Consensus 199 wel-~NEp~~~--~~~-------------~~-~~~~~w~~~~~~~Ir~~dp~ 233 (394)
-| +-|.... ... +. +....+++++.+.+++...+
T Consensus 161 -HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~ 211 (351)
T PF00728_consen 161 -HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK 211 (351)
T ss_dssp -EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE
T ss_pred -EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Confidence 33 4444421 000 00 22345577888888886655
No 87
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.76 E-value=5.2 Score=38.43 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCC-------Cccc--C-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYG-------ALQQ--S-PGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~-------~~~~--~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+.+.+.++.|+..++|++.+++.++-+|+ .+.. . .|.|. -+.+..+++.|+++||.||+.+..
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEeecC
Confidence 4678999999999999999999765442342 2211 1 12454 467889999999999999999853
No 88
>PLN02784 alpha-amylase
Probab=90.57 E-value=1.8 Score=46.70 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCC-CCCCcccCC-CCCCh--hhHHHHHHHHH
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDG-GYGALQQSP-GVYNE--PVFQGLDFVIS 118 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~-~~~~~~~~~-g~~~~--~~l~~ld~~l~ 118 (394)
+|..+.+.|++.+-+... . -...+.+.++.|+++|+++|=+...... ....+.+.. -..++ ...+.|..+++
T Consensus 500 ~~~eVmlQgF~Wds~~dg---~-w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~ 575 (894)
T PLN02784 500 SGFEILCQGFNWESHKSG---R-WYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVK 575 (894)
T ss_pred CCceEEEEeEEcCcCCCC---c-hHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHH
Confidence 577888899993222111 1 2356788899999999999988542211 001111111 00111 12578999999
Q ss_pred HHHHcCCEEEEec
Q 016140 119 EARKYGIRLILSL 131 (394)
Q Consensus 119 ~a~~~Gi~vii~l 131 (394)
.|+++||+|++|+
T Consensus 576 a~H~~GIkVIlDi 588 (894)
T PLN02784 576 SFHEVGIKVLGDA 588 (894)
T ss_pred HHHHCCCEEEEEE
Confidence 9999999999997
No 89
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.41 E-value=0.69 Score=49.07 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCEEEEc-cccCC--------------CCCC---cccCCCCCCh---hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 73 VFRQAAAAGLSVCRTW-AFSDG--------------GYGA---LQQSPGVYNE---PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~-~~~~~--------------~~~~---~~~~~g~~~~---~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
-|+.||++|+|+|=+- ++... +|.+ +.+++ .|.. ..++.|.++|+.|+++||+||+|+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~-~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP-AYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc-ccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 3899999999999993 33210 0111 12221 2221 246789999999999999999998
No 90
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=90.41 E-value=0.7 Score=48.71 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCEEEEc-cccCC-------------CCCC---cccCCCCC--Ch----hhHHHHHHHHHHHHHcCCEEE
Q 016140 72 DVFRQAAAAGLSVCRTW-AFSDG-------------GYGA---LQQSPGVY--NE----PVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 72 ~d~~~lk~~G~N~vRi~-~~~~~-------------~~~~---~~~~~g~~--~~----~~l~~ld~~l~~a~~~Gi~vi 128 (394)
+-|+.||++|+|+|=+- ++... +|.+ +.+++ .| ++ ...+.|.++|++|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 45999999999999993 33210 0110 11111 11 11 125789999999999999999
Q ss_pred EecC-CCCCCCCChhhhH----HHH---HHcCCCCC---CCccc-ccCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 016140 129 LSLS-NNYHDFGGRPQYV----NWA---RAAGASVN---SDDEF-YTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTI 196 (394)
Q Consensus 129 i~l~-~~~~~~gg~~~y~----~w~---~~~g~~~~---~~~~~-~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I 196 (394)
+|+- ++-.. +....+. .|. ...|.... -...+ ..+|.+++.+.+.++..+++ |+=+--
T Consensus 247 lDvV~NH~~~-~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDGf- 316 (605)
T TIGR02104 247 MDVVYNHTYS-REESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDGF- 316 (605)
T ss_pred EEEEcCCccC-CCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCEE-
Confidence 9983 22100 0000000 000 00010000 00011 23577888888888887776 433221
Q ss_pred eEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 197 MAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 197 ~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
=+++..... ..+++++...+|+.+|+..+.
T Consensus 317 -R~D~~~~~~----------~~~~~~~~~~~~~~~p~~~li 346 (605)
T TIGR02104 317 -RFDLMGIHD----------IETMNEIRKALNKIDPNILLY 346 (605)
T ss_pred -EEechhcCC----------HHHHHHHHHHHHhhCCCeEEE
Confidence 124442211 335677788888888876654
No 91
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=89.82 E-value=0.42 Score=47.00 Aligned_cols=122 Identities=17% Similarity=0.298 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEec--CCCCCCCCCh-h
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSL--SNNYHDFGGR-P 142 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l--~~~~~~~gg~-~ 142 (394)
...++..|+.+|+.|+.-|=+-+.+ -.+|.+ |++|| ++..+++++++++.||++.+.+ |.--.+.|.. .
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWW----GiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~ 87 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWW----GIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCN 87 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEH----HHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEe----eeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccC
Confidence 3589999999999999999884432 234554 88998 9999999999999999998766 4311111211 0
Q ss_pred -hhHHHHHHcCCCCCCCcccc----------------cCHHHHHHHHHHHHHHHhcccccccccccCC-CcEeEEEeccC
Q 016140 143 -QYVNWARAAGASVNSDDEFY----------------TNAIVKGYYKNHVKKVLTRINTITRIAYKDD-PTIMAWELINE 204 (394)
Q Consensus 143 -~y~~w~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~-p~I~~wel~NE 204 (394)
..|.|+...+. ....|| .... .+.+.+|.+.+..+ |++. ..|...+++=-
T Consensus 88 IpLP~Wv~~~~~---~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~--------f~~~~~~I~~I~vglG 155 (402)
T PF01373_consen 88 IPLPSWVWEIGK---KDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDN--------FSDYLSTITEIQVGLG 155 (402)
T ss_dssp B-S-HHHHHHHH---HSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHH--------CHHHHTGEEEEEE--S
T ss_pred CcCCHHHHhccc---cCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHH--------HHHHHhhheEEEeccC
Confidence 24678753110 001122 2223 67777777777776 4432 35665665554
Q ss_pred Ccc
Q 016140 205 ARC 207 (394)
Q Consensus 205 p~~ 207 (394)
|.+
T Consensus 156 P~G 158 (402)
T PF01373_consen 156 PAG 158 (402)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 92
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.26 E-value=9.9 Score=41.84 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC------hhhh-HHHHHH---cCCCCCCC---ccc-ccCHHHHHHHHHH
Q 016140 109 VFQGLDFVISEARKYGIRLILSLSNNYHDFGG------RPQY-VNWARA---AGASVNSD---DEF-YTNAIVKGYYKNH 174 (394)
Q Consensus 109 ~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg------~~~y-~~w~~~---~g~~~~~~---~~~-~~~~~~~~~~~~~ 174 (394)
....+.++|+.|+++||+||+|+--+-...++ .+.+ +.|... .|. .... .++ ..++.+++.+.+.
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 35789999999999999999998321001111 0111 111100 111 0000 011 1346777888888
Q ss_pred HHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccc
Q 016140 175 VKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGF 243 (394)
Q Consensus 175 ~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~ 243 (394)
++..++. |+=+- +=++++... ...+++++.+.+|+++|+..+ +| ++|
T Consensus 481 l~~W~~e--------y~VDG--FRfDlm~~~----------~~~f~~~~~~~l~~i~pdi~l-~G-EgW 527 (898)
T TIGR02103 481 LVVWAKD--------YKVDG--FRFDLMGHH----------PKAQMLAAREAIKALTPEIYF-YG-EGW 527 (898)
T ss_pred HHHHHHH--------cCCCE--EEEechhhC----------CHHHHHHHHHHHHHhCCCEEE-Ee-cCC
Confidence 8888876 55332 124655332 245667788888888887654 33 455
No 93
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.89 E-value=1.1 Score=47.76 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEEc-cccCC--------------CCCC---cccCCCCCCh-hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 73 VFRQAAAAGLSVCRTW-AFSDG--------------GYGA---LQQSPGVYNE-PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~-~~~~~--------------~~~~---~~~~~g~~~~-~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
-|+.||++|+|+|=+- ++... +|.+ +.++ +.|.. ...+.|.++|++|+++||+||+|+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4899999999999993 33210 0110 1111 12211 136789999999999999999998
No 94
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.54 E-value=20 Score=34.96 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEcc-ccCC--CCCCcccCCCCCC----hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWA-FSDG--GYGALQQSPGVYN----EPVFQGLDFVISEARKYGIRLILSLSNNYHDFG 139 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~-~~~~--~~~~~~~~~g~~~----~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~g 139 (394)
.-+.++.++.+|+.|+..|=+-. +.+| -|+. +-..|+ ...-+.+..++++|+++||++.+-++.. +++.
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S---~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~ 165 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPS---KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHH 165 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS-----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCC
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCC---CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcC
Confidence 45567889999999999776622 2222 1221 101121 2235788999999999999999987531 2110
Q ss_pred ChhhhHHHHHHcCCCCCCCcccc----cC---HHH-HHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCC
Q 016140 140 GRPQYVNWARAAGASVNSDDEFY----TN---AIV-KGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY 211 (394)
Q Consensus 140 g~~~y~~w~~~~g~~~~~~~~~~----~~---~~~-~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~ 211 (394)
+.|.. ....... .. ++. .+.+...++.|+.| | .|.++=++.......
T Consensus 166 --~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~---- 220 (346)
T PF01120_consen 166 --PDYPP---------DEEGDENGPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD---- 220 (346)
T ss_dssp --TTTTS---------SCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC----
T ss_pred --cccCC---------CccCCcccccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc----
Confidence 01100 0000000 01 222 34777899999999 9 778877787766421
Q ss_pred CchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 212 SGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 212 ~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
..+. ..++.+.||+..|+.+|.-
T Consensus 221 --~~~~--~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 221 --EDWD--SAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp --THHH--HHHHHHHHHHHSTTSEEEC
T ss_pred --cccC--HHHHHHHHHHhCCeEEEec
Confidence 1111 2888999999999888763
No 95
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=1.3 Score=42.33 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+...+.++.|.+.|+. |+|.. .+.+++ -++..+..++++++.|++.|++|++|+.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~--~IFts------l~~~~~--~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFK--RIFTS------LLIPEE--DAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCcc--ceeee------cccCCc--hHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 35677899999999999 66542 112222 2356899999999999999999999984
No 96
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=87.60 E-value=2.7 Score=39.73 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=57.9
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC-CCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNN-YHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~-~~~~gg~~~y 144 (394)
+.+++.+.-+.+++.|+|.|=+.-.+ ..+-...++.++.+-++-+..+.|||+|.|++.-. ....||
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVN--------a~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lgg---- 122 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVN--------ANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGG---- 122 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS----------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS----
T ss_pred chhHHHHHHHHHhhcCCceEEecccc--------cChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCC----
Confidence 45788899999999999999883221 11223456779999999999999999999998411 001122
Q ss_pred HHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEecc
Q 016140 145 VNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELIN 203 (394)
Q Consensus 145 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~N 203 (394)
.+. .=..||+.++.+++-..+| |+--|-..+|-+-=
T Consensus 123 --------L~T----aDPld~~V~~WW~~k~~eI-----------Y~~IPDfgGflVKA 158 (328)
T PF07488_consen 123 --------LPT----ADPLDPEVRQWWKDKADEI-----------YSAIPDFGGFLVKA 158 (328)
T ss_dssp ---------S-------TTSHHHHHHHHHHHHHH-----------HHH-TT--EEEE--
T ss_pred --------cCc----CCCCCHHHHHHHHHHHHHH-----------HHhCCCccceEEEe
Confidence 111 0124677766666655555 44456677776643
No 97
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.59 E-value=1.1 Score=43.95 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEE
Q 016140 49 FNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 49 ~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi 128 (394)
+.|++.| +... +.+..++.++.|++.|++ |+|..= ..|+. -.++.++.+..++++|+++||.|+
T Consensus 1 mlGiSvY-~~~~-----~~~~~~~yi~~a~~~Gf~--~iFTSL------~ipe~--~~~~~~~~~~~l~~~a~~~~~~v~ 64 (357)
T PF05913_consen 1 MLGISVY-PGQS-----SFEENKAYIEKAAKYGFK--RIFTSL------HIPED--DPEDYLERLKELLKLAKELGMEVI 64 (357)
T ss_dssp EEEEEE--CCCS------HHHHHHHHHHHHCTTEE--EEEEEE-----------------HHHHHHHHHHHHHHCT-EEE
T ss_pred CcEEEEe-CCCC-----CHHHHHHHHHHHHHCCCC--EEECCC------CcCCC--CHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3577754 3221 357888999999999999 665421 11211 125679999999999999999999
Q ss_pred EecC
Q 016140 129 LSLS 132 (394)
Q Consensus 129 i~l~ 132 (394)
+|+.
T Consensus 65 ~Dis 68 (357)
T PF05913_consen 65 ADIS 68 (357)
T ss_dssp EEE-
T ss_pred EECC
Confidence 9984
No 98
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=87.20 E-value=2.5 Score=45.75 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcc-cc--CCCCCCcccC-CCCCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWA-FS--DGGYGALQQS-PGVYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~-~~--~~~~~~~~~~-~g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-..+.+.++.++++|+++|=+-. +. ++....+.+. ....|+ ...+.+.+++++|+++||+||+|+
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 556789999999999999998832 32 1111111111 111222 136889999999999999999997
No 99
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=87.00 E-value=13 Score=36.24 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=88.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHH--HHHHHHHHHcCCEEEEecCCCCCCC---CC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGL--DFVISEARKYGIRLILSLSNNYHDF---GG 140 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~l--d~~l~~a~~~Gi~vii~l~~~~~~~---gg 140 (394)
+.+++++.++.+++.|+.+==+++ +..|..- -..-.+|++.+... ..+++.+++.|++|++-++-.-... ..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 567899999999999986444433 1122110 01224566677777 8999999999999998875321110 01
Q ss_pred hhhhHHHHHH-------cCCCC-----CCCc--ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCc
Q 016140 141 RPQYVNWARA-------AGASV-----NSDD--EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEAR 206 (394)
Q Consensus 141 ~~~y~~w~~~-------~g~~~-----~~~~--~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~ 206 (394)
.+.|..-... .|.+. .... .=|++|++++.+.+.++.+... ++- . .-|.=+|||.
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~Gv-d--g~w~D~~Ep~ 167 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ--------VPF-D--GLWIDMNEPS 167 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc--------CCC-c--EEEecCCCCc
Confidence 1122211110 11110 0111 1267899999998888876654 222 1 2266689996
Q ss_pred cCCCCCchH-HHHHHHHHHHHhhccCCCCEEEeccccc
Q 016140 207 CQADYSGKT-LNNWVQEMASYVKSIDNKHLLEIGLEGF 243 (394)
Q Consensus 207 ~~~~~~~~~-~~~w~~~~~~~Ir~~dp~~~V~~g~~g~ 243 (394)
..... ... ...+.+.....+++...++++...-+++
T Consensus 168 ~~~~~-hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~ 204 (339)
T cd06602 168 NFYDV-HNLYGLSEAIATYKALQSIPGKRPFVISRSTF 204 (339)
T ss_pred hHhhh-cchhhHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 43100 011 1234455666777664445555433333
No 100
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=86.85 E-value=6.7 Score=37.76 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=81.5
Q ss_pred cchhhHHHHHHHHHHcCCCEEEEccccC----------------------CC----CCCccc-------CCCCCChhhHH
Q 016140 65 SQRYKVSDVFRQAAAAGLSVCRTWAFSD----------------------GG----YGALQQ-------SPGVYNEPVFQ 111 (394)
Q Consensus 65 ~~~~~~~~d~~~lk~~G~N~vRi~~~~~----------------------~~----~~~~~~-------~~g~~~~~~l~ 111 (394)
++-+++|+.|+.|+=.|+|..=.++-.+ |. |..++. -|-.+-+...+
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 4789999999999999999887754111 10 211211 11122234455
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCCCC-hhhhHHHHHHcCCCCCCCc--------cc--ccCHHHHHHHHHHHHHHHh
Q 016140 112 GLDFVISEARKYGIRLILSLSNNYHDFGG-RPQYVNWARAAGASVNSDD--------EF--YTNAIVKGYYKNHVKKVLT 180 (394)
Q Consensus 112 ~ld~~l~~a~~~Gi~vii~l~~~~~~~gg-~~~y~~w~~~~g~~~~~~~--------~~--~~~~~~~~~~~~~~~~lv~ 180 (394)
.=.++++..++.||..|+--+... .... ...|+ +..+.... .+ .+||-..+--+.|++...+
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~-VP~~~~~~~P------~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~ 168 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGH-VPRAFKRKYP------NANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIK 168 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-E-E-TTHHHHST------T--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcCCC-CChHHHhcCC------CCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHH
Confidence 566899999999999999765321 0000 01111 11110100 11 2456666677788888888
Q ss_pred cccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCE-EEec
Q 016140 181 RINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHL-LEIG 239 (394)
Q Consensus 181 r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~-V~~g 239 (394)
. |+ ...+.+-+.+||-..... +.+.+.+-.+.+.+++++.||+.+ |+-|
T Consensus 169 ~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 169 L--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp H--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred h--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 8 88 667888999999987643 123467778889999999999987 5443
No 101
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=86.50 E-value=2.8 Score=45.62 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcc-cc--CCCCCCcccC-CCCCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWA-FS--DGGYGALQQS-PGVYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~-~~--~~~~~~~~~~-~g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-..+.+.+..++++|+|+|=+-. +. .+....+.+. ....|+ ...+.+.++++.|+++||+||+|+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 557799999999999999998833 21 1111111111 111222 135889999999999999999998
No 102
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.29 E-value=1.6 Score=49.65 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEEc-cccCCC--------------CCC---cccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 72 DVFRQAAAAGLSVCRTW-AFSDGG--------------YGA---LQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 72 ~d~~~lk~~G~N~vRi~-~~~~~~--------------~~~---~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.|+.||++|+|+|=+- ++.... |.. +.++| .|.....+.+.++|+.|+++||+||+|+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 55779999999999993 332110 110 11111 2222256889999999999999999997
No 103
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=6.7 Score=40.11 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=55.0
Q ss_pred ECCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCC-CCC--CcccCCCCCChhhHHHHHHHHH
Q 016140 42 LNGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDG-GYG--ALQQSPGVYNEPVFQGLDFVIS 118 (394)
Q Consensus 42 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~-~~~--~~~~~~g~~~~~~l~~ld~~l~ 118 (394)
..|++-|+-||-..+. ..||..+.-+..|++++++|+++.- +.+- ++. .+. ..-|+-+....|..+++
T Consensus 11 A~g~r~fiCGVvEGFY----GRPWt~EQRK~LFrrl~~~gl~tYl---YAPKDDyKHR~~W--RElY~vEEa~~L~~Li~ 81 (891)
T KOG3698|consen 11 AVGNRKFICGVVEGFY----GRPWTPEQRKHLFRRLNQLGLTTYL---YAPKDDYKHRSLW--RELYNVEEATYLRNLIE 81 (891)
T ss_pred ccccceeEEEeecccc----CCCCCHHHHHHHHHHHHhcccceee---ecccchhHHHHHH--HHHhhhHHHHHHHHHHH
Confidence 4567777888873222 3467778888899999999999543 3321 110 000 11355666889999999
Q ss_pred HHHHcCCEEEEec
Q 016140 119 EARKYGIRLILSL 131 (394)
Q Consensus 119 ~a~~~Gi~vii~l 131 (394)
+|+++||..+-.+
T Consensus 82 aAke~~i~F~YAi 94 (891)
T KOG3698|consen 82 AAKENNINFVYAI 94 (891)
T ss_pred HHHhcCceEEEEc
Confidence 9999999887665
No 104
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=84.70 E-value=31 Score=33.44 Aligned_cols=129 Identities=11% Similarity=0.115 Sum_probs=74.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
+.+++.+.++.+++.|+.+==+++-. .|.. ....-.+|++.+.....+++..++.|++|++.++-.-....+.+.|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~--~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~ 98 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDI--EHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYK 98 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEECh--HHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHH
Confidence 56789999999999998654444311 1110 00112457777888899999999999999998763211101122333
Q ss_pred HHHHHcCC--------CC-----CCCc--ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCcc
Q 016140 146 NWARAAGA--------SV-----NSDD--EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 146 ~w~~~~g~--------~~-----~~~~--~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
.=. ..|. +. +... .=|++|++++.+.+.++.+... .+.+....|.=+|||..
T Consensus 99 e~~-~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~---------~~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 99 EAK-DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYK---------GSTENLYIWNDMNEPSV 165 (339)
T ss_pred HHH-HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhc---------ccCCCceEEeccCCccc
Confidence 211 1111 00 0011 1257899999998888876532 12233344556889864
No 105
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=84.68 E-value=1.2 Score=40.84 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHHHHHHHhcccccccccccCC---CcEeEEEeccCCccCCC------C---CchHHHHHHHHHHHHhhccCCCCEEEec
Q 016140 172 KNHVKKVLTRINTITRIAYKDD---PTIMAWELINEARCQAD------Y---SGKTLNNWVQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 172 ~~~~~~lv~r~~~~~~~~~~~~---p~I~~wel~NEp~~~~~------~---~~~~~~~w~~~~~~~Ir~~dp~~~V~~g 239 (394)
.+++..|+++ |++. -.|-.|.|-|||..... + +.+.+..-.-+++++||+.||...|+ |
T Consensus 107 ~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~-G 177 (239)
T PF12891_consen 107 DEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF-G 177 (239)
T ss_dssp HHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE-E
T ss_pred HHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe-e
Confidence 4456667776 6554 35889999999986532 1 22344444567899999999999975 4
Q ss_pred cc
Q 016140 240 LE 241 (394)
Q Consensus 240 ~~ 241 (394)
.+
T Consensus 178 P~ 179 (239)
T PF12891_consen 178 PV 179 (239)
T ss_dssp EE
T ss_pred ch
Confidence 43
No 106
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=84.24 E-value=3.2 Score=42.20 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcc-ccC-CCCCCcccCC-CCCC--hhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWA-FSD-GGYGALQQSP-GVYN--EPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~-~~~-~~~~~~~~~~-g~~~--~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-.-+.+-++.++++|+++|=+-. +.. ..+..+...+ -..+ ...++.++.+++.|+++||+|++|+
T Consensus 27 dl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 27 DLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred cHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 445566899999999999998832 221 1111111110 0111 2347899999999999999999998
No 107
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=83.85 E-value=2.7 Score=44.65 Aligned_cols=57 Identities=25% Similarity=0.478 Sum_probs=40.7
Q ss_pred HHHHHHcCCCEEEEc-ccc--C-------C-----CCCC---cccCCCCC--Ch---hhHHHHHHHHHHHHHcCCEEEEe
Q 016140 74 FRQAAAAGLSVCRTW-AFS--D-------G-----GYGA---LQQSPGVY--NE---PVFQGLDFVISEARKYGIRLILS 130 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~-~~~--~-------~-----~~~~---~~~~~g~~--~~---~~l~~ld~~l~~a~~~Gi~vii~ 130 (394)
|+.+|++|+++|.+. ++. + + +|.+ +.|+ +.| ++ ..+..+..+|++++++||.||+|
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999993 221 1 0 1222 2222 233 22 36889999999999999999999
Q ss_pred c
Q 016140 131 L 131 (394)
Q Consensus 131 l 131 (394)
+
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 8
No 108
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=83.62 E-value=3.9 Score=45.87 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEc-ccc----C----C-------------CC--CC---cccCCCCCCh------hhHHHH
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTW-AFS----D----G-------------GY--GA---LQQSPGVYNE------PVFQGL 113 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~-~~~----~----~-------------~~--~~---~~~~~g~~~~------~~l~~l 113 (394)
...+.+.|+.||++|+|+|-+. ++. + . .| .+ +.+ .+.|.. ...+.|
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap-e~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL-SGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc-ccccccCCcCccccHHHH
Confidence 3445567999999999999993 332 0 0 01 11 111 122311 125789
Q ss_pred HHHHHHHHHcCCEEEEec
Q 016140 114 DFVISEARKYGIRLILSL 131 (394)
Q Consensus 114 d~~l~~a~~~Gi~vii~l 131 (394)
.++|+.|+++||+||+|+
T Consensus 558 K~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 999999999999999997
No 109
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=83.01 E-value=3.9 Score=42.86 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEcc-ccCCC-CC-CcccC-CCCCC-------h--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 71 SDVFRQAAAAGLSVCRTWA-FSDGG-YG-ALQQS-PGVYN-------E--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~-~~~~~-~~-~~~~~-~g~~~-------~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.-.+.++++|++.|=+-. +..|+ |- .+.|. ++.|| + ..++.++++++.|+++||+||+|+
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4567889999999998833 33322 10 01111 23332 2 246899999999999999999998
No 110
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=82.38 E-value=9.1 Score=36.66 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC-CCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 63 QPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS-PGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 63 ~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.||+.++-.+.|+.+++.|+|+.= +.+-+-+-+... ...|.++.++.|..+++.|++.|+..+..|+-
T Consensus 10 ~PWs~e~R~~l~~f~~~~kmN~Yi---YAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRYKMNTYI---YAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp S---HHHHHHHHHHHHHTT--EEE---E--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CCCCHHHHHHHHHHHHHcCCceEE---ECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 356778888899999999999553 332110000000 12366889999999999999999999999973
No 111
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=81.97 E-value=4.8 Score=46.98 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEc-ccc--CCCCCCccc-CCCCCChh--hHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTW-AFS--DGGYGALQQ-SPGVYNEP--VFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~-~~~--~~~~~~~~~-~~g~~~~~--~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+-..+.+-++.++++|+|+|=+- ++. .+....+.. .....|+. ..+.+.++++.|+++||+||+|+-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45678899999999999999883 232 111111111 01112221 468899999999999999999983
No 112
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=81.93 E-value=12 Score=37.20 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++++||+.+++.|++..=+-+... ++-..+.|..++++|++.|.++++.+.
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~~-------------d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGSS-------------DSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccC-------------CcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 568999999999999999887743211 122358899999999999999999874
No 113
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=81.45 E-value=32 Score=31.73 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccc
Q 016140 111 QGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAY 190 (394)
Q Consensus 111 ~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~ 190 (394)
..+..+++.|+++|++|++.+.. |. .+.+ .....++..++.+.+-+..++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~----~~~~--------------~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GS----PPEF--------------TAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CC----CCcc--------------hhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 46778899999999999999853 11 0000 11345788888888777777776 5
Q ss_pred cCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEec
Q 016140 191 KDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 191 ~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g 239 (394)
.=+---+-||-.. . ..+.+..+++++.+.+++. +.++++.
T Consensus 99 ~~DGIdiDwE~~~---~----~~~~~~~fv~~Lr~~l~~~--~~~lt~a 138 (253)
T cd06545 99 NLDGIDVDLEGPD---V----TFGDYLVFIRALYAALKKE--GKLLTAA 138 (253)
T ss_pred CCCceeEEeeccC---c----cHhHHHHHHHHHHHHHhhc--CcEEEEE
Confidence 5443344444321 1 1346778888888888753 3455554
No 114
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=81.45 E-value=3.1 Score=43.85 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEcc-ccC------CCCCC--cccCCCCCC----hhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWA-FSD------GGYGA--LQQSPGVYN----EPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~-~~~------~~~~~--~~~~~g~~~----~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.+..++++..+|.+|.|+|-+-. +.- .+|.. +...-++|. +.....+..+|++|+..||-|++|+
T Consensus 254 ~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 254 LGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45677789999999999999932 221 11211 000011221 2236788999999999999999998
No 115
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=80.94 E-value=39 Score=32.52 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 163 TNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 163 ~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
.+++.++.+.+++..+.++ .|.|. |=| ++=+|+..+|.........+...++++.+++.+|+..|+.+|..
T Consensus 141 ~~~~W~~il~~rl~~l~~k--GfDGv-fLD--~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQ--GFDGV-YLD--LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred ccHHHHHHHHHHHHHHHHc--CCCeE-eec--cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3577777788888877765 44444 222 34456666554422112235677899999999999999876653
No 116
>PLN02877 alpha-amylase/limit dextrinase
Probab=80.29 E-value=5.2 Score=44.10 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEec
Q 016140 109 VFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 109 ~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
....+.++|+.|+++||+||+|+
T Consensus 464 RI~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEE
Confidence 45679999999999999999997
No 117
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=79.99 E-value=7.6 Score=37.78 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccC-HHHHHHHHHHHHHHHhcccccccccccCC
Q 016140 115 FVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTN-AIVKGYYKNHVKKVLTRINTITRIAYKDD 193 (394)
Q Consensus 115 ~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~lv~r~~~~~~~~~~~~ 193 (394)
..++.|+++|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+.+..|++. |+=+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD 105 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD 105 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC
Confidence 3588999999999999876543 221 2221 22334 55666777888888887 6655
Q ss_pred CcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 194 PTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 194 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
--. +.+.|.+. .....+.+.+|++++.+..++..|+..|+
T Consensus 106 Gw~--iN~E~~~~--~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 GWL--INIETELG--DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred ceE--eeeeccCC--cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 433 34555542 11134678899999999999988887765
No 118
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.89 E-value=4 Score=38.05 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.++.++.+|+++|+++....+ + ...+...-+...+.|..+.+.|+++||++.+..+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 46777889999999999999653221 1 1111111245668899999999999999988865
No 119
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=79.15 E-value=10 Score=34.47 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccc
Q 016140 107 EPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTIT 186 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~ 186 (394)
+..+..|.+.+.+|.+.||++|-- .|.+.|.. -.|++.++.|.+-++..+.-
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQL--------AGYDVYYE---------------~~d~eT~~rFi~g~~~a~~l----- 143 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQL--------AGYDVYYE---------------EADEETRQRFIEGLKWAVEL----- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEee--------ccceeeec---------------cCCHHHHHHHHHHHHHHHHH-----
Confidence 568899999999999999998753 24444421 13678888888777766542
Q ss_pred cccccCCCcEeEEEeccCCcc
Q 016140 187 RIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 187 ~~~~~~~p~I~~wel~NEp~~ 207 (394)
=......+++|++.-|-.
T Consensus 144 ---A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 ---AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ---HHhhccEEEeeecccHHH
Confidence 112345778899877764
No 120
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=79.05 E-value=62 Score=31.05 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=89.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
+.+++++.++.+++.++.+==+++- ..|.. .-..-.+|++.+.....+++.+++.|++|++-++-+-......+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD--~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLD--IHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEC--hhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 5678999999999999875555431 11211 00122567778888899999999999999988753321000011121
Q ss_pred HHHH------H-cCCCC-----CCCc--ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCC
Q 016140 146 NWAR------A-AGASV-----NSDD--EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADY 211 (394)
Q Consensus 146 ~w~~------~-~g~~~-----~~~~--~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~ 211 (394)
.=.. . .|.+. +... -=|++|++++.+.+.++.+... .+ -. .-|.=+|||....+.
T Consensus 99 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~g-vd--g~w~D~~Ep~~~~~~ 167 (317)
T cd06600 99 SGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QG-VD--GIWLDMNEPSDFEKV 167 (317)
T ss_pred HHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CC-Cc--eEEeeCCCCccHHHh
Confidence 1000 0 11110 0111 1257899999998888876643 21 11 225558998643110
Q ss_pred CchHHHHHHHHHHHHhhccCC-CCEEEeccccc
Q 016140 212 SGKTLNNWVQEMASYVKSIDN-KHLLEIGLEGF 243 (394)
Q Consensus 212 ~~~~~~~w~~~~~~~Ir~~dp-~~~V~~g~~g~ 243 (394)
..--...+.+...+.+++..| ++++++.-+++
T Consensus 168 hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~ 200 (317)
T cd06600 168 HNLYGLYEAMATAEGFRTSHPRNRIFILTRSGF 200 (317)
T ss_pred cchhhHHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 000112345566677777653 55555543333
No 121
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=77.72 E-value=8.4 Score=38.97 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCC-------Cccc----------------------------CCCCCChhhH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYG-------ALQQ----------------------------SPGVYNEPVF 110 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~-------~~~~----------------------------~~g~~~~~~l 110 (394)
+.+.+.+.|+.|+...+|++.+++.++-+|+ .+.. ..|.|. -
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 5688999999999999999999765432342 1100 012343 4
Q ss_pred HHHHHHHHHHHHcCCEEEEecCC
Q 016140 111 QGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 111 ~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+..+++.|+++||.||+.+..
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID~ 119 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEIDM 119 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccCC
Confidence 77889999999999999998843
No 122
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=77.58 E-value=21 Score=35.06 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCC
Q 016140 115 FVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDP 194 (394)
Q Consensus 115 ~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p 194 (394)
.++..|+++|++|++... .+ .....++..++.|.+-+..++++ |.=+-
T Consensus 68 ~~~~~A~~~~v~v~~~~~--------~~----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfDG 115 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGD--------VP----------------LEQISNPTYRTQWIQQKVELAKS--------QFMDG 115 (358)
T ss_pred HHHHHHHHcCCEEEEECc--------cC----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCCe
Confidence 678999999999997621 00 01235788888888888888877 54443
Q ss_pred cEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEec
Q 016140 195 TIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 195 ~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g 239 (394)
--+-||--+.. ...+.+.+..+++++.+++++..+...+++.
T Consensus 116 IdIDwE~p~~~---~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 116 INIDIEQPITK---GSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred EEEcccCCCCC---CcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 34445532221 1123456788899999999887777777764
No 123
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.37 E-value=29 Score=32.54 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=54.8
Q ss_pred EEE-CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHH
Q 016140 40 FVL-NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVIS 118 (394)
Q Consensus 40 ~~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~ 118 (394)
+.+ +|+.+.+.|-+.-. +.+...+.-+.+|+.|+.++|...+.+ +. .|..|..-.-+.+..+-+
T Consensus 21 ~~~g~~~~~~iaGPCsie---------~~~~~~~~A~~lk~~g~~~~r~~~~kp-RT-----s~~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 21 VVIGGEEKIIIAGPCAVE---------SEEQMVKVAEKLKELGVHMLRGGAFKP-RT-----SPYSFQGLGEEGLKILKE 85 (266)
T ss_pred EEEcCCCEEEEEeCCcCC---------CHHHHHHHHHHHHHcCCCEEEEeeecC-CC-----CCCccCCcHHHHHHHHHH
Confidence 445 34556677877321 457788889999999999999966542 11 122232223566777777
Q ss_pred HHHHcCCEEEEecCCC
Q 016140 119 EARKYGIRLILSLSNN 134 (394)
Q Consensus 119 ~a~~~Gi~vii~l~~~ 134 (394)
.|++.||.++-++++.
T Consensus 86 ~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 86 VGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHcCCCEEEeeCCh
Confidence 8899999999999763
No 124
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=75.94 E-value=81 Score=31.29 Aligned_cols=139 Identities=18% Similarity=0.234 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEcc-ccCC--CCCCcccCCCCCC----hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWA-FSDG--GYGALQQSPGVYN----EPVFQGLDFVISEARKYGIRLILSLSNNYHDFG 139 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~-~~~~--~~~~~~~~~g~~~----~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~g 139 (394)
.-+.++..+.+|+.|++.|=+-. +.+| -|+. +-..|+ .-.-+.+..+.++|+++||++-+-... ++++.
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S---~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~ 155 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDS---KYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN 155 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCCccccCC---CCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC
Confidence 45567889999999999877722 2222 1211 000111 003577889999999999999996432 22110
Q ss_pred ChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHH
Q 016140 140 GRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNW 219 (394)
Q Consensus 140 g~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w 219 (394)
+.|..-. . .......+....++.+.+...++.|+.+ |+. .++=++...+-.. ..|
T Consensus 156 --p~y~~~~---~-~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~---------~~~ 210 (384)
T smart00812 156 --PLYAGPT---S-SDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD---------DYW 210 (384)
T ss_pred --Ccccccc---c-cccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc---------chh
Confidence 1111000 0 0000111111223333348899999999 976 5665665432111 112
Q ss_pred -HHHHHHHhhccCCCC
Q 016140 220 -VQEMASYVKSIDNKH 234 (394)
Q Consensus 220 -~~~~~~~Ir~~dp~~ 234 (394)
..++++.||++.|+.
T Consensus 211 ~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 211 RSKEFLAWLYNLSPVK 226 (384)
T ss_pred cHHHHHHHHHHhCCCC
Confidence 467889999999987
No 125
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.80 E-value=17 Score=36.72 Aligned_cols=156 Identities=8% Similarity=0.079 Sum_probs=98.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCC--------------------------CCCcccC---CCCCChh----hHHH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGG--------------------------YGALQQS---PGVYNEP----VFQG 112 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~--------------------------~~~~~~~---~g~~~~~----~l~~ 112 (394)
.-+++|+.|+.|+=.|+|.+=.|.-.+.- |.++..- .|...+. .+-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 66899999999999999988776321100 2221110 1222221 2223
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCCChh-----hhH--------HHHHHcCCCCCCCccc---ccCHHHHHHHHHHHH
Q 016140 113 LDFVISEARKYGIRLILSLSNNYHDFGGRP-----QYV--------NWARAAGASVNSDDEF---YTNAIVKGYYKNHVK 176 (394)
Q Consensus 113 ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~-----~y~--------~w~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (394)
-.++++...+.||.+++.-+.. ..+ .|+ .|.. .+......+ ..||-.++--..|++
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG-----~VP~al~rlfPesnf~rl~rWn~---f~s~~~C~l~v~P~dplF~eIgs~Flr 227 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAG-----HVPDALERLFPESNFTRLPRWNN---FTSRYSCMLLVSPFDPLFQEIGSTFLR 227 (666)
T ss_pred HHHHHHHHHHcCCCccchhhcc-----ccHHHHHHhCchhceeeccccCC---CCcceeeeEEccCCcchHHHHHHHHHH
Confidence 3588999999999999876531 111 011 1100 000001111 235666777778999
Q ss_pred HHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 177 KVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 177 ~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
++.+. |++..+|..=+.+||-..... +.+-+..-..++..+.|..|++.+-..
T Consensus 228 ~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 228 HQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEee
Confidence 99998 998888998899999887632 334566777888899999999987543
No 126
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=74.37 E-value=92 Score=30.59 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=46.7
Q ss_pred CCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCC-CChHHHHHHHHHHHHHH
Q 016140 269 MIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAG-FSINVRDSFLNTIYMNI 347 (394)
Q Consensus 269 ~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~-~~~~~~~~~~~~~~~~~ 347 (394)
....+||+.+++|............ ...+..|+.-....+.+ -+--+++|==|....++. += ......++++..+
T Consensus 204 ~~~~fDf~~IQFYNN~~CS~SsG~~-Q~~fDsW~~ya~~~a~n-Kn~~lFLGLPg~~~AAGSGYI--sp~~Lt~~~l~~~ 279 (568)
T KOG4701|consen 204 SENSFDFLSIQFYNNSTCSGSSGSR-QSTFDAWVEYAEDSAYN-KNTSLFLGLPGHQNAAGSGYI--SPKNLTRDLLNYK 279 (568)
T ss_pred hccccceEEEEeecCCCcccccCcc-cccHHHHHHHHhhhccc-ccceEEeeccCCcccccCCcc--CchHHHHHHHHhh
Confidence 3467999999999764332211111 12234455433333322 244689987777665432 20 1124445555544
Q ss_pred HHHHhcCCcccccccccc
Q 016140 348 YNLARNGGAIGGGMVWQL 365 (394)
Q Consensus 348 ~~~~~~~~~~~G~~~W~~ 365 (394)
.+. ....|.+.|.-
T Consensus 280 a~S----~~fGGv~LWd~ 293 (568)
T KOG4701|consen 280 ANS----TLFGGVTLWDT 293 (568)
T ss_pred hhc----cccccEEEeec
Confidence 332 23568999985
No 127
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.26 E-value=7.8 Score=36.23 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++-++.++.+|++.||++.+.. + ..+.+..--+...+.|..+++.|+++||++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 5567888899999999999853211 0 11111111134567899999999999999998765
No 128
>PLN03244 alpha-amylase; Provisional
Probab=73.80 E-value=48 Score=35.93 Aligned_cols=125 Identities=11% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCCC--------CCCChh-hhHHHHHHcCCC--CCCCcccccCHHHHHHHHHHHHH
Q 016140 110 FQGLDFVISEARKYGIRLILSLS-NNYH--------DFGGRP-QYVNWARAAGAS--VNSDDEFYTNAIVKGYYKNHVKK 177 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~-~~~~--------~~gg~~-~y~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 177 (394)
.+.|.++|+.|+++||.||+|+- ++.. .++|.+ .|.... ..|.. .....--+..++.++.+..-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 56799999999999999999973 2211 011111 111000 00000 01111124467888888888888
Q ss_pred HHhcccccccccccCCCcEeEEEeccCC-----ccCCCC-CchHHHHHHHHHHHHhhccCCCCEE
Q 016140 178 VLTRINTITRIAYKDDPTIMAWELINEA-----RCQADY-SGKTLNNWVQEMASYVKSIDNKHLL 236 (394)
Q Consensus 178 lv~r~~~~~~~~~~~~p~I~~wel~NEp-----~~~~~~-~~~~~~~w~~~~~~~Ir~~dp~~~V 236 (394)
.++. -++.|.++-.-.+++-.+-+.+. ...... .......+++.+...|++..|+.+.
T Consensus 519 WleE-yhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~it 582 (872)
T PLN03244 519 WITE-YQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIIT 582 (872)
T ss_pred HHHH-hCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEE
Confidence 7765 24455444444444433322111 000000 1134567788888889999998553
No 129
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=72.60 E-value=80 Score=31.42 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=88.3
Q ss_pred EEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC----CC--CCChhhH-HHHHHHHHHH
Q 016140 48 LFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS----PG--VYNEPVF-QGLDFVISEA 120 (394)
Q Consensus 48 ~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~----~g--~~~~~~l-~~ld~~l~~a 120 (394)
...|.|.++..... .+.+.+.+.++.++++|++.+=| ++| |..-... -| ..|++.| ..|..+++.+
T Consensus 41 ~pv~~nsW~~~~~d---~~e~~i~~~a~~~~~~G~e~fvi---DDG-W~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i 113 (394)
T PF02065_consen 41 PPVGWNSWEAYYFD---ITEEKILELADAAAELGYEYFVI---DDG-WFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYI 113 (394)
T ss_dssp --EEEESHHHHTTG-----HHHHHHHHHHHHHHT-SEEEE----SS-SBCTESTTTSTTSBECBBTTTSTTHHHHHHHHH
T ss_pred CceEEEcccccCcC---CCHHHHHHHHHHHHHhCCEEEEE---cCc-cccccCCCcccCCceeEChhhhCCcHHHHHHHH
Confidence 35678854332222 26788999999999999985544 443 5311000 12 2244444 4589999999
Q ss_pred HHcCCEEEEecCCCCCCCCC--hhhhHHHHHHc-CCCC-CCCc---ccccCHHHHHHHHHHHHHHHhcccccccccccCC
Q 016140 121 RKYGIRLILSLSNNYHDFGG--RPQYVNWARAA-GASV-NSDD---EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDD 193 (394)
Q Consensus 121 ~~~Gi~vii~l~~~~~~~gg--~~~y~~w~~~~-g~~~-~~~~---~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~ 193 (394)
++.||+.-|=+--.-...++ ...+++|.... +.+. .... --+++|++++...+.+..+++. ++ -
T Consensus 114 ~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~--------~g-i 184 (394)
T PF02065_consen 114 HSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE--------WG-I 184 (394)
T ss_dssp HHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------TT--
T ss_pred HHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------cC-C
Confidence 99999987654100000001 11234454211 1111 1111 1146799999999988888766 32 1
Q ss_pred CcEeEEEeccCCccCCCCC-chHHHHH---HHHHHHHhhccCCCCEEEecc
Q 016140 194 PTIMAWELINEARCQADYS-GKTLNNW---VQEMASYVKSIDNKHLLEIGL 240 (394)
Q Consensus 194 p~I~~wel~NEp~~~~~~~-~~~~~~w---~~~~~~~Ir~~dp~~~V~~g~ 240 (394)
.-| =|+..-......... .+...+. +-++.+.||+.-|+.+|-...
T Consensus 185 dYi-K~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 185 DYI-KWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCS 234 (394)
T ss_dssp SEE-EEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-B
T ss_pred CEE-EeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 122 255533222221111 1222222 346788899999999987543
No 130
>PRK14565 triosephosphate isomerase; Provisional
Probab=72.01 E-value=34 Score=31.44 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=63.0
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGA 153 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~ 153 (394)
...+|++|++.+=+-+... +-.|+|+ =+.+.+=+..|.++||.+|+++...- ...
T Consensus 78 ~~mLkd~G~~~viiGHSER---------R~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~------e~r--------- 132 (237)
T PRK14565 78 AKMLKECGCSYVILGHSER---------RSTFHET-DSDIRLKAESAIESGLIPIICVGETL------EDR--------- 132 (237)
T ss_pred HHHHHHcCCCEEEECcccc---------cCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCH------HHH---------
Confidence 3567899999998844321 1122222 12333445899999999999985310 000
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCC
Q 016140 154 SVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNK 233 (394)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 233 (394)
......+...+.++....- . .+-|+||| |-+........-..-++++...||+..++
T Consensus 133 ---------~~~~~~~~~~~Ql~~~l~~--------~--~~ivIAYE----PvWAIGtG~~a~~e~i~~~~~~Ir~~~~~ 189 (237)
T PRK14565 133 ---------ENGMTKDVLLEQCSNCLPK--------H--GEFIIAYE----PVWAIGGSTIPSNDAIAEAFEIIRSYDSK 189 (237)
T ss_pred ---------HccChHHHHHHHHHHHhcC--------C--CCEEEEEC----CHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 0011222222333333322 2 35677774 54332111111233467888899988777
Q ss_pred CEEEecc
Q 016140 234 HLLEIGL 240 (394)
Q Consensus 234 ~~V~~g~ 240 (394)
..|..|+
T Consensus 190 ~~IlYGG 196 (237)
T PRK14565 190 SHIIYGG 196 (237)
T ss_pred ceEEEcC
Confidence 7777764
No 131
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.69 E-value=12 Score=35.09 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++-++.++.+|.+.|+++... .. ........-+...+.|.++.+.|+++|+++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 457888999999999999985321 00 01111011134668888999999999999999864
No 132
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=68.89 E-value=86 Score=29.69 Aligned_cols=159 Identities=11% Similarity=0.138 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccC--CC--CC-CcccCCCCCChhhHHHHHHHH-HHHHHcCCEEEEecCC-CCCCCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSD--GG--YG-ALQQSPGVYNEPVFQGLDFVI-SEARKYGIRLILSLSN-NYHDFG 139 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~--~~--~~-~~~~~~g~~~~~~l~~ld~~l-~~a~~~Gi~vii~l~~-~~~~~g 139 (394)
...+...|++++++|+|+|=+=.|.+ |. .. .+.|+ ..-+-.-+.+-++. ++..+.|++|.-=+.. .|.. .
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpn--r~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~l-p 92 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPN--RHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDL-P 92 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCC--CCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccC-C
Confidence 45678889999999999998855553 11 00 01111 11122235556666 5666899987643211 1111 1
Q ss_pred ChhhhHHHHHHcCCCCCCCccc----ccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe---ccCCccCCCCC
Q 016140 140 GRPQYVNWARAAGASVNSDDEF----YTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWEL---INEARCQADYS 212 (394)
Q Consensus 140 g~~~y~~w~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel---~NEp~~~~~~~ 212 (394)
+.+ +...... +. ...... .-+|+.++..++.-+.|+.. .++.|+-|.|+..+--+|+ .+++... ..
T Consensus 93 ~~~-~~~~~~~-~~--~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~~--~K 165 (294)
T PF14883_consen 93 KVK-RADEVRT-DR--PDPDGYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPADR--QK 165 (294)
T ss_pred Ccc-hhhhccc-cC--CCCCCceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhhH--HH
Confidence 111 1111100 00 001111 22789999999999999975 6889988888765554451 1111110 01
Q ss_pred chHHHHHHHHHHHHhhccCCCCE
Q 016140 213 GKTLNNWVQEMASYVKSIDNKHL 235 (394)
Q Consensus 213 ~~~~~~w~~~~~~~Ir~~dp~~~ 235 (394)
...+..+..+++..+|...|...
T Consensus 166 t~~Li~ft~eL~~~v~~~rp~lk 188 (294)
T PF14883_consen 166 TRALIDFTMELAAAVRRYRPDLK 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHhCccch
Confidence 24567888899999998876544
No 133
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=68.58 E-value=12 Score=32.70 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+.+++.++.++.+|+..++++........... ...--+...+.|+++++.|+++|+.+.+..+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD--TEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS--HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCC--HHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 467889999999999999999643100000000 00011456688999999999999999998764
No 134
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.11 E-value=12 Score=35.04 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++-++.++.+|+..|++..... ...+.....-+...+.|..+++.|+++|+.+.+..+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV----YYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc----cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 4577888999999999999843211 011111001123467889999999999999988865
No 135
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=68.08 E-value=65 Score=27.93 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCc--ccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGAL--QQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~--~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
...++..+.+++.|+..+-+........... ....-. ....++.+.+.++.|++.|...+......+.. ...
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~-~~~---- 100 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPS-GPE---- 100 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESS-STT----
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccccc-ccC----
Confidence 4577778888999999777644322111000 001111 35678999999999999999987764220000 000
Q ss_pred HHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHH
Q 016140 146 NWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMAS 225 (394)
Q Consensus 146 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~ 225 (394)
....+..+.+.+.++.+++. -+.+...+ .+.|.|...... ... .+++..
T Consensus 101 ----------------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i--~lE~~~~~~~~~-~~~----~~~~~~ 149 (213)
T PF01261_consen 101 ----------------DDTEENWERLAENLRELAEI--------AEEYGVRI--ALENHPGPFSET-PFS----VEEIYR 149 (213)
T ss_dssp ----------------SSHHHHHHHHHHHHHHHHHH--------HHHHTSEE--EEE-SSSSSSSE-ESS----HHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHHHHhh--------hhhhcceE--EEecccCccccc-hhh----HHHHHH
Confidence 11234566667777777765 44444444 444555544211 000 466777
Q ss_pred HhhccCCCC
Q 016140 226 YVKSIDNKH 234 (394)
Q Consensus 226 ~Ir~~dp~~ 234 (394)
.++++++..
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 777777554
No 136
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=67.93 E-value=1.2e+02 Score=29.17 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-C--CCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-S--PGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.+.++.+++.|+.+==+++ +. .| +.. . .-.+|++.+....++++.++++|++|++.++
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l-D~-~~--~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQ-DW-FY--WPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE-ec-hh--hcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 567899999999999876433433 11 11 110 1 1245777888899999999999999998764
No 137
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=67.75 E-value=20 Score=32.94 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+...++.++.+|++|+++|-+ ++|.- . ++ .+..-++++.++++|++|...+.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---S~G~~----~----i~---~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---SDGSM----E----IS---LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---cCCcc----C----CC---HHHHHHHHHHHHhCCCeEecccc
Confidence 467899999999999999998 33311 0 11 35566889999999999998874
No 138
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=66.65 E-value=15 Score=33.67 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+++-++.++.+|...||++.... +-........+...+.|.++.+.|+++||.+.+..++
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5566788899999999999853211 0000000112344577889999999999999998765
No 139
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.90 E-value=1.1e+02 Score=28.49 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhccccccc
Q 016140 108 PVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITR 187 (394)
Q Consensus 108 ~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~ 187 (394)
..++.+.+.++.|++.|..++. ++. +...+ + -.+++..+.+.+.++.++..
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~-~~~------~~~~~-------~---------~~~~~~~~~~~~~l~~l~~~------ 141 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQ-LAG------YDVYY-------E---------EHDEETRRRFREGLKEAVEL------ 141 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-ecC------ccccc-------C---------cCCHHHHHHHHHHHHHHHHH------
Confidence 5678899999999999999775 321 10000 0 01345567777888888876
Q ss_pred ccccCCCcEeEEEeccC
Q 016140 188 IAYKDDPTIMAWELINE 204 (394)
Q Consensus 188 ~~~~~~p~I~~wel~NE 204 (394)
-+.+...+++|..+.
T Consensus 142 --A~~~Gv~l~lE~~~~ 156 (279)
T TIGR00542 142 --AARAQVTLAVEIMDT 156 (279)
T ss_pred --HHHcCCEEEEeeCCC
Confidence 556666677775543
No 140
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.49 E-value=28 Score=32.31 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
+++.+.+--+.+++.|++.+|--.|.+ -.+|..|-.-.++.|..+.+.|++.||.++-++++.
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kp------Rts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKP------RTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCC------CCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 556777777889999999999854432 123444444446788999999999999999999763
No 141
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.85 E-value=60 Score=30.76 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=72.2
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcc------c--CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQ------Q--SPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHD 137 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~------~--~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~ 137 (394)
+.+++++.++.+++.|+.+==+++ |.+|..-. . ..-.+|++.+.....+++.+++.|+++++-++-.-..
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 567899999999999975433322 11121100 0 1225677888889999999999999999887542100
Q ss_pred CCChhhhHHHHHHcCCCCCCCc---ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccC
Q 016140 138 FGGRPQYVNWARAAGASVNSDD---EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQ 208 (394)
Q Consensus 138 ~gg~~~y~~w~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~ 208 (394)
....+.|....+..+....... --+++|++++.+.+.+.+... +...-.-|.=+|||...
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~-----------~~Gidg~W~D~~E~~~~ 163 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE-----------KQGVDFWWLDWQQGNRT 163 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH-----------hcCCcEEEecCCCCccc
Confidence 0112345554443333221111 124678887765444333222 22222235558998643
No 142
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=64.49 E-value=48 Score=31.20 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCC--CCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC---
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSP--GVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGG--- 140 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~--g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg--- 140 (394)
+.+..++.++.++++|+..|=+ +.+|......+ ......--..|.++++.|+++|+.|+|=.|.. ..++
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~--~~~~~~~ 103 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE--TGGNVAN 103 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC--HTTBHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC--cchhhHh
Confidence 6788999999999999999888 22354211110 00111223678899999999999999877642 1111
Q ss_pred ----hhhhHHHHHHcCCCCCCCccccc--CHHHHHHHHHHHHHHHhc
Q 016140 141 ----RPQYVNWARAAGASVNSDDEFYT--NAIVKGYYKNHVKKVLTR 181 (394)
Q Consensus 141 ----~~~y~~w~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~lv~r 181 (394)
.+....+....|.. .-+.+|+. ++...+.+.+.++..|++
T Consensus 104 ~~~~~~~~f~~~~~~Gv~-GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 104 LEKQLDEAFKLYAKWGVK-GVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHCCHHHHHHHHHHCTEE-EEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-EEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 11122233333321 12345654 467888899999998876
No 143
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=61.99 E-value=24 Score=32.97 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+.+++-++.++++|++.|+++.... .. .+ ....-+...+.+.++++.|+++||++.+..+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~---~~-~~-~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSY---LG-QS-KEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC---CC-CC-HHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 45678889999999999999864321 10 00 0011144568889999999999999998865
No 144
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=61.88 E-value=28 Score=34.80 Aligned_cols=66 Identities=18% Similarity=0.386 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccC-CC----CC---CcccCCCCC---ChhhHHHHHHHHHHH-HHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSD-GG----YG---ALQQSPGVY---NEPVFQGLDFVISEA-RKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~-~~----~~---~~~~~~g~~---~~~~l~~ld~~l~~a-~~~Gi~vii~l 131 (394)
.-++|++.|+.+++.|.|+|.+..+.. |. |. .++-.|.-+ .+..++.+.+++..+ +++||..+.|+
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 346899999999999999999954332 21 11 111112111 123567888888887 58999999998
No 145
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=60.52 E-value=1.4e+02 Score=31.88 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccC--C--CCC-CcccC---CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC-CC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSD--G--GYG-ALQQS---PGVYNEPVFQGLDFVISEARKYGIRLILSLSNN-YH 136 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~--~--~~~-~~~~~---~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~-~~ 136 (394)
..+.+...|+.++++|+|+|=+=+|.+ | .++ .+.|. |++ .+.|+.+-.. .+.++|++|.-=+... +.
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~--l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQ--LRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHH--HHHhhCCEEEEeccceeec
Confidence 357789999999999999998866543 2 122 11221 332 2233333333 3889999986322110 00
Q ss_pred CCCChhhhHHHHHHcCCCCCCCccc-----ccCHHHHHHHHHHHHHHHhcccccccccccCCCcEe
Q 016140 137 DFGGRPQYVNWARAAGASVNSDDEF-----YTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIM 197 (394)
Q Consensus 137 ~~gg~~~y~~w~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~ 197 (394)
.....+....+. ..+.+......+ .-+|++++...+..+.||++ .++.|+-|.|+..+-
T Consensus 408 ~~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~ 471 (671)
T PRK14582 408 LDPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLS 471 (671)
T ss_pred cCCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEeccccccc
Confidence 000000000010 001110001111 12689999999999999986 478888787765443
No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.02 E-value=25 Score=32.46 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+++-++.++.+|...|+++... .+. ...+....+...+.|.++.+.|+++|+++.+..++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK---TPA-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---CCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 457888899999999999984311 100 00011111334577788999999999999998754
No 147
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=59.71 E-value=82 Score=30.95 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=54.4
Q ss_pred EEE-CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHH
Q 016140 40 FVL-NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVIS 118 (394)
Q Consensus 40 ~~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~ 118 (394)
+.+ +|++.++.|=+.- .+.+.+.+.-+.+++.|++.+|--.+.+ -++|..|-.-.++.+..+-+
T Consensus 112 ~~~g~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~kp------Rtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 112 EVIGDGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEecCCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccCC------CCCCccccCCCHHHHHHHHH
Confidence 444 4677777765421 1456777888899999999999743321 11233333333577888888
Q ss_pred HHHHcCCEEEEecCCC
Q 016140 119 EARKYGIRLILSLSNN 134 (394)
Q Consensus 119 ~a~~~Gi~vii~l~~~ 134 (394)
.|++.||.++-++++.
T Consensus 177 ~~~~~Gl~~~t~v~d~ 192 (360)
T PRK12595 177 VADEYGLAVISEIVNP 192 (360)
T ss_pred HHHHcCCCEEEeeCCH
Confidence 9999999999999763
No 148
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=59.67 E-value=55 Score=31.80 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=50.5
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHH
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARK 122 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~ 122 (394)
+++.+++.|-+. ..+++.+.+.-+.+|+.|.+++|...|-+ +. +|..|..-..+.|.-+.+.|++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKp-RT-----sp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKP-RT-----SPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecC-CC-----CCcccccccHHHHHHHHHHHHH
Confidence 345556667441 12567778888899999999999876643 11 1222222224556677778999
Q ss_pred cCCEEEEecCC
Q 016140 123 YGIRLILSLSN 133 (394)
Q Consensus 123 ~Gi~vii~l~~ 133 (394)
.||.++-++++
T Consensus 156 ~Gl~v~tev~d 166 (335)
T PRK08673 156 TGLPIVTEVMD 166 (335)
T ss_pred cCCcEEEeeCC
Confidence 99999999875
No 149
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=58.97 E-value=51 Score=32.96 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.+.-+.+++.|+|.+=+...+. -..+.--++...+..+.++-+.-+.+||++.+++.
T Consensus 181 n~qR~kDYAR~laSiGINg~v~NNVNv-----k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin 242 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVLNNVNV-----KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN 242 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEeccccc-----chhhhheechHhHHHHHHHHHHhhhccceEEEEec
Confidence 347788888899999999988733211 00001123455788899999999999999999984
No 150
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=58.08 E-value=23 Score=32.64 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+..+++.++.++++||++|-+ ++|.- . .+ .+..-+++..+++.|++|+..+.
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---SdGti----~----l~---~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---SDGTI----D----LP---EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----SSS--------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---cCCce----e----CC---HHHHHHHHHHHHHCCCEEeeccc
Confidence 457899999999999999998 33311 0 11 34555789999999999999874
No 151
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=57.86 E-value=33 Score=32.24 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+..+.|++...+.|+..||++... ..++.+...++.|+++|+.+.+.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~----------------~~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDAL----------------NDVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC----------------ChHHHHHHHHHHHHHCCCeEEEEE
Confidence 457889999999999999995421 117888899999999999988765
No 152
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=57.57 E-value=1.3e+02 Score=27.90 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+.+|+.|++.|=+-+... +..|.|+ =+.+.+=+..|.++||.+|+++..
T Consensus 79 ~~mLkd~G~~~viiGHSER---------R~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSER---------RQYFGET-DELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred HHHHHHCCCCEEEeCcccc---------cCccCcC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3567899999999844321 1122222 133334445599999999999853
No 153
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=56.93 E-value=15 Score=23.00 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=5.2
Q ss_pred CCCCcEEEeC
Q 016140 28 AQAGFVQTRG 37 (394)
Q Consensus 28 ~~~~~v~~~g 37 (394)
...|-|.++|
T Consensus 21 ~~pG~ViING 30 (36)
T PF08194_consen 21 ATPGNVIING 30 (36)
T ss_pred CCCCeEEECc
Confidence 3355555554
No 154
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=56.51 E-value=77 Score=30.14 Aligned_cols=95 Identities=14% Similarity=0.255 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCC
Q 016140 114 DFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDD 193 (394)
Q Consensus 114 d~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~ 193 (394)
.+++..|+++|++|++.+.+ |.. ++.+. . ....+..++..++.+.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~~-~-----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFDS-E-----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCCH-H-----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 47899999999999999864 211 11100 0 0123456788888888888888877 6544
Q ss_pred CcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 194 PTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 194 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
--.+-||-. .. .+.+.+..+++++...+++.. .++++
T Consensus 106 GidiDwE~~----~~--~d~~~~~~fl~~lr~~l~~~~--~~lsv 142 (313)
T cd02874 106 GVNIDFENV----PP--EDREAYTQFLRELSDRLHPAG--YTLST 142 (313)
T ss_pred cEEEecccC----CH--HHHHHHHHHHHHHHHHhhhcC--cEEEE
Confidence 434444321 11 134567788888888887533 34444
No 155
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=56.44 E-value=65 Score=31.23 Aligned_cols=115 Identities=11% Similarity=0.183 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYV 145 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~ 145 (394)
+.+++++.++.+++.++..==+++ |.+|.. .-..-.+|++.+.....+++..++.|+++++.++-.-. .|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~----- 92 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHV--DVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG----- 92 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEE--cCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----
Confidence 567888899999999975322322 111210 00122456777777889999999999999987753211 111
Q ss_pred HHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCcc
Q 016140 146 NWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 146 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
.| +.+ ..-.+ |++|++++.+.+..+.+.+. + -. .-|.=+|||..
T Consensus 93 ~~----~~~-~~~pD-ftnp~ar~wW~~~~~~l~~~---------G-v~--~~W~DmnEp~~ 136 (332)
T cd06601 93 GL----GSP-GLYPD-LGRPDVREWWGNQYKYLFDI---------G-LE--FVWQDMTTPAI 136 (332)
T ss_pred cC----CCC-ceeeC-CCCHHHHHHHHHHHHHHHhC---------C-Cc--eeecCCCCccc
Confidence 01 000 00112 57899988777766655432 1 11 23677888864
No 156
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=55.48 E-value=36 Score=30.33 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEE
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRL 127 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~v 127 (394)
-.++.-++.++++|.+.|.+|.+. | ...++.+..+.++|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPm~-G-------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKFFPMG-G-------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE---T-T-------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred ccHHHHHHHHHHcCCCeeeEeecC-C-------------cccHHHHHHHHHHHHHcCcee
Confidence 457889999999999999997652 1 345788889999999999998
No 157
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=55.37 E-value=30 Score=32.28 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=36.2
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChh------hHHHHHHH
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEP------VFQGLDFV 116 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~------~l~~ld~~ 116 (394)
...|+ +.|+|..-|. -.++..|+.+|++|+.-|-=|.. +.--+|.|.+. .++.=-.+
T Consensus 80 ~~tPV-iaGv~atDP~---------~~~~~fl~~lk~~Gf~GV~NfPT-------vgliDG~fR~~LEe~Gmgy~~EVem 142 (268)
T PF09370_consen 80 KDTPV-IAGVCATDPF---------RDMDRFLDELKELGFSGVQNFPT-------VGLIDGQFRQNLEETGMGYDREVEM 142 (268)
T ss_dssp SSS-E-EEEE-TT-TT-----------HHHHHHHHHHHT-SEEEE-S--------GGG--HHHHHHHHHTT--HHHHHHH
T ss_pred cCCCE-EEEecCcCCC---------CcHHHHHHHHHHhCCceEEECCc-------ceeeccHHHHHHHhcCCCHHHHHHH
Confidence 34555 7788844332 35888999999999986654321 10011211110 22333478
Q ss_pred HHHHHHcCCEEEEecC
Q 016140 117 ISEARKYGIRLILSLS 132 (394)
Q Consensus 117 l~~a~~~Gi~vii~l~ 132 (394)
+..|++.||..+.-.+
T Consensus 143 i~~A~~~gl~T~~yvf 158 (268)
T PF09370_consen 143 IRKAHEKGLFTTAYVF 158 (268)
T ss_dssp HHHHHHTT-EE--EE-
T ss_pred HHHHHHCCCeeeeeec
Confidence 9999999998765543
No 158
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=55.22 E-value=95 Score=25.67 Aligned_cols=82 Identities=15% Similarity=0.303 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccc
Q 016140 107 EPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTIT 186 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~ 186 (394)
...++.|.-+|+.|++.|+.|++-+.- .-..|....|. +.+.++.+.+-++.++++
T Consensus 32 SpEy~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG~----------~~~~r~~~y~kI~~~~~~----- 87 (130)
T PF04914_consen 32 SPEYDDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTGL----------SKEMRQEYYKKIKYQLKS----- 87 (130)
T ss_dssp -THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT-----
T ss_pred CccHHHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhCC----------CHHHHHHHHHHHHHHHHH-----
Confidence 345899999999999999999987641 22346654453 577888889999999988
Q ss_pred cccccCCCcEeEEEe---ccCCccCCCCCchHHHHH
Q 016140 187 RIAYKDDPTIMAWEL---INEARCQADYSGKTLNNW 219 (394)
Q Consensus 187 ~~~~~~~p~I~~wel---~NEp~~~~~~~~~~~~~w 219 (394)
++= .|+ ++ .+||....+.-.-.+.-|
T Consensus 88 ---~gf--~v~--D~s~~~y~~yfm~D~iHlgw~GW 116 (130)
T PF04914_consen 88 ---QGF--NVA--DFSDDEYEPYFMQDTIHLGWKGW 116 (130)
T ss_dssp ---TT----EE--E-TTGTTSTTSBSSSSSB-THHH
T ss_pred ---CCC--EEE--ecccCCCCCceeeecccCchhhH
Confidence 443 343 55 456655544333334445
No 159
>PTZ00333 triosephosphate isomerase; Provisional
Probab=55.03 E-value=1.6e+02 Score=27.48 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 75 RQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 75 ~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..++++|++.|=+-+... +..|.|+ =+.+.+-+..|.++||.+|+++..
T Consensus 83 ~mL~d~G~~~viiGHSER---------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 83 EMLKDLGINWTILGHSER---------RQYFGET-NEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred HHHHHcCCCEEEECcccc---------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 567899999998844321 1112222 256778889999999999999853
No 160
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=54.66 E-value=1.7e+02 Score=26.73 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhccccccccc
Q 016140 110 FQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIA 189 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~ 189 (394)
++.....+..++++|++|++.+.. +.. +. .+ ....+++.++.|.+.+..++.+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~--~~-~~---------------~~~~~~~~~~~fa~~l~~~v~~-------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHL--GA-GF---------------ANNLSDAAAKAYAKAIVDTVDK-------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCC--CC-Cc---------------cccCCHHHHHHHHHHHHHHHHH--------
Confidence 466677888899999999999853 111 00 00 0123566677777777777766
Q ss_pred ccCCCcEeEEEeccCCccC-CCCCchHHHHHHHHHHHHhhccCC-CCEEEec
Q 016140 190 YKDDPTIMAWELINEARCQ-ADYSGKTLNNWVQEMASYVKSIDN-KHLLEIG 239 (394)
Q Consensus 190 ~~~~p~I~~wel~NEp~~~-~~~~~~~~~~w~~~~~~~Ir~~dp-~~~V~~g 239 (394)
|+=+---+-||-.+..... ...+.+.+..+++++.+.+ +| +.++++.
T Consensus 103 yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~ 151 (255)
T cd06542 103 YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTID 151 (255)
T ss_pred hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEE
Confidence 6544444455544322111 0011233444444444443 34 5666664
No 161
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.04 E-value=44 Score=35.17 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEe
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILS 130 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~ 130 (394)
+.++.+++.+++.|+..+|++..-+ .++.+...++.|+++|+.+...
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~ln----------------d~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMN----------------DPRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCC----------------cHHHHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999963211 1567778888899999876443
No 162
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=52.71 E-value=38 Score=34.29 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcc----c---CCCCCChhh---HHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQ----Q---SPGVYNEPV---FQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~----~---~~g~~~~~~---l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.-..+.+.|+.|+..-+|++..++.++-..| ++ | .-|.|++.. -+.+-.+|+.|+-+||+|++.+.
T Consensus 196 pv~~IkrtLeaMa~nKLNVlHWHivDs~SFP-le~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 196 PVKVIKRTLEAMAANKLNVLHWHIVDSQSFP-LESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred cHHHHHHHHHHHHhhhhceeEEEeecCCCCc-cccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 3467899999999999999999775432221 21 1 125565432 37788999999999999999874
No 163
>PRK01060 endonuclease IV; Provisional
Probab=52.25 E-value=90 Score=28.97 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEE
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRL 127 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~v 127 (394)
.+++-++.++++|++.|-+++..+..|. +..+++ +.+..+-++++++||.+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWK-----RKPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCc-----CCCCCH---HHHHHHHHHHHHcCCCC
Confidence 3888999999999999999764332221 222333 34566777889999984
No 164
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=52.19 E-value=58 Score=34.28 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.+-++..++.+++.|+.++|++-.-+ .++.+...++.+++.|+.+...+
T Consensus 95 d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~~~~~i 143 (596)
T PRK14042 95 DDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKHAQGAI 143 (596)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCEEEEEE
Confidence 45688899999999999999964221 14555566667777776666553
No 165
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=51.95 E-value=38 Score=29.87 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=31.9
Q ss_pred CCCCCcEEEe-CCeEEECCeEEEEEeeec-----------cccccccCCCcchhhHHHHHHHHHHcCCCE
Q 016140 27 PAQAGFVQTR-GTQFVLNGSPFLFNGFNS-----------YWMMNVASQPSQRYKVSDVFRQAAAAGLSV 84 (394)
Q Consensus 27 ~~~~~~v~~~-g~~~~~~G~~~~~~G~N~-----------~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~ 84 (394)
....|.|.++ .++++++|..+-+...+. +|...+. ....-...+..|++.|+..
T Consensus 26 ~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~----~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 26 EQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTS----AKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred CCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCC----hhhccchHHHHHHHcCCCc
Confidence 3567778886 558888776555555442 3333332 1223345677888888775
No 166
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.49 E-value=33 Score=31.83 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
-+++|+.|.+.+.+.++.+. .+| +.++..++.+.++.+.|++.+|-.++.+..+
T Consensus 117 a~riK~~G~~avK~Lvy~~~------D~~-e~neqk~a~ierigsec~aedi~f~lE~lty 170 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRS------DED-EINEQKLAYIERIGSECHAEDLPFFLEPLTY 170 (306)
T ss_pred HHHHHHhcccceEEEEEEcC------Cch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeec
Confidence 46889999999999877542 123 5678889999999999999999999998764
No 167
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=50.78 E-value=73 Score=30.50 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCC--CCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG--VYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.++.++.++.+++.|.+.|.++..... ..+.. .++ .++ .+.+..++++|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~-~~~~~-~~~~~~~~---~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGV-LSPGD-PPPDTQFS---EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCc-CCCCC-CCcccCcC---HHHHHHHHHHHHHcCCEEEEEe
Confidence 4678889999999999999999753211 10000 111 233 4667889999999999877644
No 168
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=50.36 E-value=2.4e+02 Score=27.19 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.+.++.+++.|+.+==+++- ..|.. .-..-.+|++.+.....+++..+++|+++++-++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD--~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLD--IDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEEC--chhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 5678899999999999865444331 11210 0011245677777788999999999999997654
No 169
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.19 E-value=41 Score=31.67 Aligned_cols=50 Identities=10% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.++.|+.++++|+.-|-+=-+ .. -+....+..+++++.|.++.|.| ++|.
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~---d~Q~~v~~y~~i~~~AA~~~Lmv--nfHg 157 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DR---DDQEMVNWYEDILEDAAEYKLMV--NFHG 157 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SS---TSHHHHHHHHHHHHHHHHTT-EE--EETT
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CC---CCHHHHHHHHHHHHHHHHcCcEE--EecC
Confidence 588899999999999888111 11 14778999999999999999864 5553
No 170
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.13 E-value=2.1e+02 Score=26.45 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCC----hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChh
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYN----EPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRP 142 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~----~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~ 142 (394)
.+..++--+.+++.|+.+.=+...... .+. ++..+ +..++.+.+.++.|++.|...+.. +. +.
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~~~~~~---~~~--~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~~- 122 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMCLSAHR---RFP--LGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AG------YD- 122 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEeccccc---ccC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------cc-
Confidence 345555566667788776554221100 010 11112 356788999999999999997763 21 10
Q ss_pred hhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEec
Q 016140 143 QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELI 202 (394)
Q Consensus 143 ~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~ 202 (394)
. | .+ ...++..+.+.+.++.++.. -+.+...+++|..
T Consensus 123 ~---~---~~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~ 159 (283)
T PRK13209 123 V---Y---YE---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIM 159 (283)
T ss_pred c---c---cc---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeec
Confidence 0 0 00 01245566677777777776 4455556666654
No 171
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.51 E-value=66 Score=22.66 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
...++.++.+++.|++.+=+--.. .+.....+.++++++||++++.+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~-----------------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG-----------------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC-----------------cccCHHHHHHHHHHcCCeEEEEE
Confidence 357789999999999988772111 13334577788889999998754
No 172
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.00 E-value=72 Score=32.49 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-++.-++.+++.|+.++|++-.-+ ..+.+...++.+++.|..+.+.+
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCEEEEEE
Confidence 4566678999999999999964211 26778889999999999987665
No 173
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=48.96 E-value=47 Score=33.64 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
..++++++.+.+.|++.||++...+ + .+.+...++.|+++|+.+.+.+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALN--------------D--VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCeEEEEE
Confidence 4578899999999999999965321 0 2457789999999999987665
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.26 E-value=45 Score=31.17 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.++++.+.+.|+..||+... ...++.+...++.|+++|+.|.+.+-
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46899999999999999431 22478888999999999999998874
No 175
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=47.97 E-value=4e+02 Score=30.01 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.+.++.+++.|+.+==+|+-. +|-. .-..-.+|++.+.....+++..++.|++++.-++
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDi--dYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iid 262 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDI--DYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLD 262 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEeh--hhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEc
Confidence 46778889999999997654444321 1210 0012245677777888999999999999887653
No 176
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=47.96 E-value=1.6e+02 Score=28.54 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHH-cCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccc
Q 016140 110 FQGLDFVISEARK-YGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRI 188 (394)
Q Consensus 110 l~~ld~~l~~a~~-~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~ 188 (394)
...+.++..+.++ -+++|++.+.. |.. ++ ..+ ..+..++..++.|.+-+..++++
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG-~~~-~~-~~f--------------~~~~~~~~~r~~fi~~iv~~l~~------- 110 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGG-WNF-GS-AKF--------------SAMAASPENRKTFIKSAIAFLRK------- 110 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcC-CCC-Cc-chh--------------HHHhCCHHHHHHHHHHHHHHHHH-------
Confidence 3445555544444 48999999842 211 00 011 12345788888888888888877
Q ss_pred cccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEec
Q 016140 189 AYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 189 ~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g 239 (394)
|+=+--.+-||--+-.. ....+.+.+..+++++.+.+++..++.++++.
T Consensus 111 -~~~DGidiDwE~p~~~~-~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 111 -YGFDGLDLDWEYPGQRG-GPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred -cCCCCeeeeeeccccCC-CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 65455555666433211 11112456778888888888876666666654
No 177
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.95 E-value=42 Score=31.98 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCC--CCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG--VYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+++.+.++.+++.|+..=-+++ ++ .| +..-| .+|++.+..+..+++..++.|+++++-+.-
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~i-D~-~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEI-DD-NW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEe-CC-Cc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 678899999999999976433322 22 23 22222 557777888999999999999999998753
No 178
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.99 E-value=2.3e+02 Score=26.01 Aligned_cols=93 Identities=6% Similarity=0.090 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccc
Q 016140 107 EPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTIT 186 (394)
Q Consensus 107 ~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~ 186 (394)
+..++.+++.++.|++.|...++..... .+ +. .+..+..+.+.+.++.++..
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~----~~---~~----------------~~~~~~~~~~~~~l~~l~~~----- 137 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAH----AG---YL----------------TPPNVIWGRLAENLSELCEY----- 137 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCC----CC---CC----------------CCHHHHHHHHHHHHHHHHHH-----
Confidence 3568899999999999999988653210 00 00 01234556667777777765
Q ss_pred cccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccC-CCCEEE
Q 016140 187 RIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSID-NKHLLE 237 (394)
Q Consensus 187 ~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d-p~~~V~ 237 (394)
-+.+.-.+++|..+...... ..-..++...+++++ |+.-+.
T Consensus 138 ---a~~~gv~l~iE~~~~~~~~~-------~~t~~~~~~l~~~~~~~~v~~~ 179 (275)
T PRK09856 138 ---AENIGMDLILEPLTPYESNV-------VCNANDVLHALALVPSPRLFSM 179 (275)
T ss_pred ---HHHcCCEEEEecCCCCcccc-------cCCHHHHHHHHHHcCCCcceeE
Confidence 44455556666543222110 111456677777776 444343
No 179
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.25 E-value=31 Score=32.25 Aligned_cols=60 Identities=18% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+|++.+.+.|++.||++..... .. .+..-+.--++.++.+..++..|+++|++|.+.+-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~-~~-~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSP-FL-REASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45899999999999999642110 00 00011111256789999999999999999999874
No 180
>PLN02429 triosephosphate isomerase
Probab=45.90 E-value=2.7e+02 Score=26.86 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHHHH----HHHcCCEEEEecCC
Q 016140 113 LDFVISE----ARKYGIRLILSLSN 133 (394)
Q Consensus 113 ld~~l~~----a~~~Gi~vii~l~~ 133 (394)
.|.++.. |.++||.+|+++..
T Consensus 165 td~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 165 KDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred CHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 3455555 99999999999853
No 181
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.89 E-value=33 Score=32.89 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+.+|+.|.+.|-+.++.+. .+|-..+....+.+.++-+.|++.+|-.++.+..
T Consensus 111 ~~rike~GadavK~Llyy~p------D~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYDV------DEPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred HHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 56889999999999776431 1233456778899999999999999999999875
No 182
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=45.83 E-value=59 Score=29.62 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..-+...++.+++.|+.-|.++.+.+|+- ..| ..++..|..+.+.+.+.|.--|-++.
T Consensus 45 ~~Hl~al~~~a~~~gv~~V~vH~f~DGRD----t~P----~S~~~yl~~l~~~l~~~~~g~IAsv~ 102 (223)
T PF06415_consen 45 IDHLFALIKLAKKQGVKKVYVHAFTDGRD----TPP----KSALKYLEELEEKLAEIGIGRIASVS 102 (223)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEE-SSS----S-T----TTHHHHHHHHHHHHHHHTCTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCC----CCc----chHHHHHHHHHHHHHhhCCceEEEEe
Confidence 35678899999999999999999888742 123 56789999999999999886777764
No 183
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=45.80 E-value=14 Score=29.01 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHHhhccCC-CC--CCCc--------EEEeCCeEEECCeEEEE
Q 016140 6 AKFSFLWAIALLLHLASAQTL-PA--QAGF--------VQTRGTQFVLNGSPFLF 49 (394)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~--------v~~~g~~~~~~G~~~~~ 49 (394)
||-.++++.+|+++..+|++. .+ ..-| |+..++.+.+||+.+.+
T Consensus 1 Mk~L~~La~~L~alaLa~p~~~~a~~~~TFE~~GvV~~v~~e~~lv~IDgq~YrL 55 (118)
T PF14481_consen 1 MKSLRLLATALFALALACPGLAWAAEPHTFEGAGVVQEVQPEKNLVDIDGQHYRL 55 (118)
T ss_dssp --------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE-
T ss_pred CcchHHhhhhhhhhhhccccceeccCcceecccceEEEeecccceEEEcCcEEeC
Confidence 566777777777666555542 12 1222 44456777788887654
No 184
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=44.97 E-value=2.6e+02 Score=25.92 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCC--CCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG--VYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+++.+.++.+++.|+.+==+++ ++ .|.. ....- .+|++.+.....+++.+++.|+++++.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l-D~-~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVL-DD-DYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEE-Cc-cccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 567899999999999987444432 21 2211 01122 46677888899999999999999999764
No 185
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=44.73 E-value=2.9e+02 Score=26.37 Aligned_cols=49 Identities=8% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhc
Q 016140 111 QGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTR 181 (394)
Q Consensus 111 ~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r 181 (394)
..+.+-+..|++.|++|++.+.. |. +. ....++..++.+.+.+..+++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-~~--~~-------------------~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-AN--GH-------------------VDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-CC--Cc-------------------cccCCHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999842 10 00 0134566777777777777766
No 186
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=44.73 E-value=49 Score=29.86 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEE
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRL 127 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~v 127 (394)
-.++.-++.++++|.+.|.+|.+. | .+.++.+..+.++|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~-G-------------l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG-G-------------LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC-C-------------cccHHHHHHHHHHHHHcCCcc
Confidence 457888999999999999997652 1 334777778888899999873
No 187
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.53 E-value=1.3e+02 Score=28.10 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=54.0
Q ss_pred EEEeCCeEEE-CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHH
Q 016140 33 VQTRGTQFVL-NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQ 111 (394)
Q Consensus 33 v~~~g~~~~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~ 111 (394)
|.+.+ +.+ +|+++++.|-+.- .+.+...+.-+.+++.|.+..|-+++-+ + +.|..|..-..+
T Consensus 14 i~~~~--~~~g~~~~~~IAGpc~i---------e~~~~~~~~A~~lk~~~~k~~r~~~~Kp-R-----tsp~s~~g~g~~ 76 (260)
T TIGR01361 14 VDVGG--VKIGEGSPIVIAGPCSV---------ESEEQIMETARFVKEAGAKILRGGAFKP-R-----TSPYSFQGLGEE 76 (260)
T ss_pred EEECC--EEEcCCcEEEEEeCCcc---------CCHHHHHHHHHHHHHHHHHhccCceecC-C-----CCCccccccHHH
Confidence 55522 344 4677777785521 1456677778888889988888654432 1 112222222356
Q ss_pred HHHHHHHHHHHcCCEEEEecCCC
Q 016140 112 GLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 112 ~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
.|..+-+.|++.||.++-++++.
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~ 99 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDP 99 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCCh
Confidence 66777778999999999999863
No 188
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.30 E-value=39 Score=32.89 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 72 DVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 72 ~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
-..+.++++|.++|=+.++...+ .+...+...++.+.++.+.|+++||-+++.+.
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~~d------~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYRPD------EDDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeCCC------cchHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 34677999999999997763210 01122457889999999999999999999754
No 189
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=44.20 E-value=77 Score=34.04 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEE-cccc--CCCCCCcc-cCCCCCChh--hHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRT-WAFS--DGGYGALQ-QSPGVYNEP--VFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi-~~~~--~~~~~~~~-~~~g~~~~~--~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.-....+.++.++++|+.++=+ ++|. .|+...+. ..|.++||+ ..+.+.+++.++++.||-+|+|+-
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 4467888999999999998766 2222 22211121 112334443 568889999999999999999984
No 190
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.07 E-value=57 Score=30.32 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.++++.+.+.|++.||++.... ....+...++.|++.|+.+.+.+-
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s----------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT----------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh----------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4789999999999999954211 134677899999999999988873
No 191
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.85 E-value=45 Score=31.64 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccC-C--CCCC---cccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSD-G--GYGA---LQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~-~--~~~~---~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
++...++.|+.+|+.|+|++=+=.-.+ | .++. +...-+.. .-+..+..++..|++.|||+|-.+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv--~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSV--NKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcc--ccccccHHHHHHHHhcCeEEEEEE
Confidence 567889999999999999987722111 1 1211 10001111 227778899999999999999664
No 192
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=43.35 E-value=73 Score=31.65 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+-+++.++...+.|++++|+|-- +. ..+.|...++.++++|..+...+.
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDA-------lN---------D~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDA-------LN---------DVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechh-------cc---------chhHHHHHHHHHHhcCceeEEEEE
Confidence 357888899999999999999621 11 146788899999999999988774
No 193
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.32 E-value=3.3e+02 Score=26.69 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCcEEEeC--CeEEE-CCeE-EEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCC
Q 016140 30 AGFVQTRG--TQFVL-NGSP-FLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVY 105 (394)
Q Consensus 30 ~~~v~~~g--~~~~~-~G~~-~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~ 105 (394)
...+.++. +.+.+ ++++ +.+.|=+. . .+++.+.+.-+.+|+.|++.+|--.|.+ + ++|..|
T Consensus 82 ~~~v~v~~~~~~v~iGg~~~l~vIAGPCs-----I----Es~eq~l~~A~~lk~~g~~~~r~g~~kp-R-----tsp~sf 146 (352)
T PRK13396 82 ASEVVVPTPNGPVPFGENHPVVVVAGPCS-----V----ENEEMIVETAKRVKAAGAKFLRGGAYKP-R-----TSPYAF 146 (352)
T ss_pred CceEEEecCcCCeEecCCCeEEEEEeCCc-----c----cCHHHHHHHHHHHHHcCCCEEEeeeecC-C-----CCCccc
Confidence 34455542 33455 3554 55777431 1 2567778888899999999999644332 1 123333
Q ss_pred ChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 106 NEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 106 ~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..-.-+.|..+-+.+++.||.++-++++
T Consensus 147 ~G~g~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 147 QGHGESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred CCchHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 2222455666677899999999999875
No 194
>PRK12677 xylose isomerase; Provisional
Probab=43.19 E-value=48 Score=32.84 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHc--CCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKY--GIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~--Gi~vii~l~ 132 (394)
+.+.+-++.++++|.+.|.+|.-.++..-..+......-+...+.|+.+.+.|++. |+++.|...
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 34677789999999999999753222100111110001123446677888889884 599888764
No 195
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.94 E-value=58 Score=31.63 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+|++.+.+.|+..||+..... ..+.+.+.++.|++.|+.|.+.+-.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~----------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT----------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc----------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3789999999999999954321 1345788999999999999988743
No 196
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=42.86 E-value=63 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+|++.+.+.|+..||+..... ..+...+.++.+++.|+.|...+-
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~----------------e~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT----------------EADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc----------------hHHHHHHHHHHHHHcCCeEEEEEE
Confidence 4689999999999999954321 134567899999999999988774
No 197
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=42.19 E-value=47 Score=35.47 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcccc---CCCCCCcccCCC---CCChhhHHHHHHHHHHHHHcCCEEEEecCCCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFS---DGGYGALQQSPG---VYNEPVFQGLDFVISEARKYGIRLILSLSNNY 135 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~---~~~~~~~~~~~g---~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~ 135 (394)
+.+..++.|+.+++.|.++|-+--+. .+.- .+ |..- .||....+....++-..+++|+...+-+...|
T Consensus 70 spe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~-~L-P~K~VaLTFDDGy~s~yt~A~PILkkygvpATfFlvg~w 143 (671)
T PRK14582 70 RTSALREQFAWLRENGYQPVSVAQILEAHRGGK-PL-PEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVWAPVGSW 143 (671)
T ss_pred CHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCC-CC-CCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEEEEechh
Confidence 56889999999999999999882111 1110 11 1111 35655556667889999999999876554333
No 198
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.05 E-value=35 Score=31.64 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.++++.+.+.|++.||+...... .. .+..-+.-.+..++.+..+++.|++.|+.|.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~-~~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD-IH-LAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 56888999999999999642210 00 00011111256788999999999999999887653
No 199
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=41.99 E-value=99 Score=31.81 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.+.++.+++...+.|++.+|++..-+ .++.+...++.+++.|..+...+
T Consensus 96 ddvv~~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 96 DEVVDRFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCeEEEEE
Confidence 35788999999999999999964211 25888899999999999885554
No 200
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.88 E-value=44 Score=32.14 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 73 VFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
..+.+|+.|.+.|-+.++.+. .++-..+....+.+.++-+.|++.+|-.++.+..+
T Consensus 112 s~~rike~GadavK~Llyy~p------D~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Y 167 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYDV------DGDEEINDQKQAYIERIGSECTAEDIPFFLELLTY 167 (329)
T ss_pred hHHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 467899999999999776431 01224567788999999999999999999998753
No 201
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=41.83 E-value=45 Score=32.06 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=43.9
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
.+.+|+.|.+.|-+.++.+.+ ++-..+....+.+.++-++|++.+|-.++.+..+
T Consensus 112 ~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYDVD------DAEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred HHHHHHhCCCeEEEEEEeCCC------CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 678999999999997764310 1224567788999999999999999999998763
No 202
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=41.71 E-value=49 Score=34.49 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCC--CCCCccc-CCCCCCh--hhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDG--GYGALQQ-SPGVYNE--PVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~--~~~~~~~-~~g~~~~--~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.-+..-++.++++|++++=+-.+... .+..+.+ ....+++ ..++.+..+++++++.||++|+|+
T Consensus 40 ~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~ 108 (545)
T KOG0471|consen 40 KGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADL 108 (545)
T ss_pred ccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEee
Confidence 34667899999999999887332210 0000000 1111222 246889999999999999999998
No 203
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=41.48 E-value=84 Score=33.61 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcccc---CCCCCCcccCCC-----CCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFS---DGGYGALQQSPG-----VYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~---~~~~~~~~~~~g-----~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+..++.|+.|++.|.++|-+=-+. .+. .+-|+ .||+...+.+..++...+++|+...+=+..
T Consensus 70 spe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~----~~LP~KaV~LTFDDGy~sny~~AlPILKkyg~pATfFvVg 141 (672)
T PRK14581 70 RSSALNEQFVWLRDNGYHVVSVDQILAARNGG----PTLPDKAVLLTFDDGYSSFYRRVYPLLKAYKWSAVLAPVG 141 (672)
T ss_pred CHHHHHHHHHHHHHCcCEEecHHHHHHHHhcC----CCCCCCeEEEEEEcCCcchHHHHHHHHHHcCCCEEEEEec
Confidence 56889999999999999999871111 110 11122 456666778899999999999998765443
No 204
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.19 E-value=2.8e+02 Score=25.31 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCE
Q 016140 165 AIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHL 235 (394)
Q Consensus 165 ~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~ 235 (394)
.+..+.+.+.++.+++. .++..-.+++|..|-+..... ...-..++...|++.++..+
T Consensus 116 ~~~~~~~~~~l~~l~~~--------a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~v 173 (258)
T PRK09997 116 EQIHATLVENLRYAANM--------LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCNL 173 (258)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCCE
Confidence 44566677777777776 566666778887775321100 01113455566777765443
No 205
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=40.30 E-value=1e+02 Score=30.78 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=64.2
Q ss_pred HHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 016140 117 ISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTI 196 (394)
Q Consensus 117 l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I 196 (394)
...|+++|+.|+=++...|.. |+. .-..|..+.+..+.+.+.+.++++. ++=+.-+
T Consensus 117 tn~AHrHGV~vlGTFItEw~e-g~~---------------~c~~~La~~es~~~~~e~L~~l~~~--------fgFdGWL 172 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDE-GKA---------------TCKEFLATEESVEMTVERLVELARF--------FGFDGWL 172 (526)
T ss_pred cchhhhcCceeeeeEEEEecc-chh---------------HHHHHHccchhHHHHHHHHHHHHHH--------hCCceEE
Confidence 467999999999888776632 221 1123445566677888888888887 7665544
Q ss_pred eEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 197 MAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 197 ~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
+ .+.|--.... .+.+..++..+.+..++..|+-+|.
T Consensus 173 i--NiEn~i~~~~---i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 173 I--NIENKIDLAK---IPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred E--EeeeccChhh---CccHHHHHHHHHHHHhhcCCCceEE
Confidence 3 4555554432 3467899999999999999988875
No 206
>PLN02561 triosephosphate isomerase
Probab=39.92 E-value=3.1e+02 Score=25.46 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
...++++|++.+=+-+... +..|+|+ =+.+.+-+..|.++||.+|+++..
T Consensus 81 ~~mL~d~G~~~viiGHSER---------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE 130 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSER---------RALLGES-NEFVGDKVAYALSQGLKVIACVGE 130 (253)
T ss_pred HHHHHHcCCCEEEECcccc---------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcCC
Confidence 3567899999998844321 2223333 356677788999999999999853
No 207
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=39.24 E-value=2.5e+02 Score=26.83 Aligned_cols=99 Identities=13% Similarity=0.295 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHc-CCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccc
Q 016140 112 GLDFVISEARKY-GIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAY 190 (394)
Q Consensus 112 ~ld~~l~~a~~~-Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~ 190 (394)
.+.++..+.+++ +++|++.+.. |.. + .. -..+..++..++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~--s-~~--------------f~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTE--S-DN--------------FSSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCC--C-cc--------------hhHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455566666665 9999998853 211 0 01 112345778888888888888887 5
Q ss_pred cCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhcc---CCCCEEEecc
Q 016140 191 KDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSI---DNKHLLEIGL 240 (394)
Q Consensus 191 ~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~---dp~~~V~~g~ 240 (394)
.=+--.+-||- |... ..+.+.+..+++++...+++. .++..+++..
T Consensus 107 ~~DGidiDwE~---~~~~-~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEY---PGAR-GDDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcC---CCCC-ccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 43332333332 2211 012456778888888888765 4566676643
No 208
>PRK09989 hypothetical protein; Provisional
Probab=39.08 E-value=71 Score=29.38 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..+++-++.++.+|...|+++.. +.+-...+....+...+.|.++.+.|+++|+.+.+...
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g----~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAG----VVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECcc----CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34666777789999999998431 11000000111133568889999999999999988754
No 209
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.00 E-value=46 Score=31.52 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..++++.+.+.|++.||++..... .. .+.+-+.--++.++.+...++.|+++|+.|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~-~~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASE-AF-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 357889999999999999653210 00 01111222356789999999999999999986653
No 210
>PRK14567 triosephosphate isomerase; Provisional
Probab=38.57 E-value=3.3e+02 Score=25.32 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=33.5
Q ss_pred HHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 75 RQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 75 ~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..+|++|++.|=+-+... +..|.|+ -+.+.+-+..|.++||.+|+++..
T Consensus 79 ~mLkd~G~~yviiGHSER---------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiGE 127 (253)
T PRK14567 79 RMLEDIGCDYLLIGHSER---------RSLFAES-DEDVFKKLNKIIDTTITPVVCIGE 127 (253)
T ss_pred HHHHHcCCCEEEECcccc---------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467899999998844321 1122222 244667788999999999999853
No 211
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=38.08 E-value=3.3e+02 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+.+++.|++.|=+-+... +.-|.++ -+.+.+-+..|.++||.+|+++..
T Consensus 77 ~~mL~d~G~~~viiGHSER---------R~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiGE 126 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSER---------RQYFGET-DEDVAKKVKAALEAGLTPILCVGE 126 (242)
T ss_pred HHHHHHcCCCEEEeCcccc---------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567899999999844321 1112222 467788899999999999999853
No 212
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.13 E-value=1.3e+02 Score=29.02 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=43.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCC------CCCcccCCCCCCh-----------hhHHHHHHHHHHHHHcCCEEE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGG------YGALQQSPGVYNE-----------PVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~------~~~~~~~~g~~~~-----------~~l~~ld~~l~~a~~~Gi~vi 128 (394)
+.+...+.++.+++.|.++|++=.+.... -..+...++.|+. -.++.+..+.+.|++.||.++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 66788999999999999999993332100 0001101112211 113445678889999999999
Q ss_pred EecCC
Q 016140 129 LSLSN 133 (394)
Q Consensus 129 i~l~~ 133 (394)
-+.++
T Consensus 95 stpfd 99 (327)
T TIGR03586 95 SSPFD 99 (327)
T ss_pred EccCC
Confidence 99865
No 213
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=36.11 E-value=2.1e+02 Score=25.97 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=54.2
Q ss_pred EEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCE
Q 016140 47 FLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIR 126 (394)
Q Consensus 47 ~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~ 126 (394)
+.++.+|.-++....+. .-..+.+...+..+..|.+++=+-..++|.|+.-...+ ++....|.++=...+++||.
T Consensus 63 l~IvSINAlypFn~wt~-~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~----~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 63 LTIVSINALYPFNEWTE-ERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRR----EDLVEALKALKPILDEYGIT 137 (272)
T ss_pred cEEEEeeccccccccCh-HHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccch----HHHHHHHHHhhHHHHHhCcc
Confidence 45778886666433321 13456777888999999999988777777775322222 44456677777788899998
Q ss_pred EEEecC
Q 016140 127 LILSLS 132 (394)
Q Consensus 127 vii~l~ 132 (394)
=++...
T Consensus 138 GLVEPL 143 (272)
T COG4130 138 GLVEPL 143 (272)
T ss_pred cccccc
Confidence 777654
No 214
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=35.93 E-value=3.9e+02 Score=25.61 Aligned_cols=113 Identities=13% Similarity=0.149 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHH
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQYVNWAR 149 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~ 149 (394)
-.+-.+.+|+.|+..||++- + ++ .+|.+...-||.|++.+.+. ....-
T Consensus 15 p~~vv~l~ks~~i~~vri~d----------~-----~~-------~iL~a~a~S~i~v~v~vpN~--------~l~~l-- 62 (310)
T PF00332_consen 15 PCKVVSLLKSNGITKVRIYD----------A-----DP-------SILRAFAGSGIEVMVGVPNE--------DLASL-- 62 (310)
T ss_dssp HHHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GG--------GHHHH--
T ss_pred HHHHHHHHHhcccccEEeec----------C-----cH-------HHHHHHhcCCceeeeccChH--------HHHHh--
Confidence 44566778899999999952 1 12 45777778899999998642 01110
Q ss_pred HcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhc
Q 016140 150 AAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKS 229 (394)
Q Consensus 150 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~ 229 (394)
...+.....+++.=+.. |...-.|....++||....... .....-++.+..++++
T Consensus 63 ---------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~~--~~lvpAm~ni~~aL~~ 117 (310)
T PF00332_consen 63 ---------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTDN--AYLVPAMQNIHNALTA 117 (310)
T ss_dssp ---------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSGG--GGHHHHHHHHHHHHHH
T ss_pred ---------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCccc--eeeccHHHHHHHHHHh
Confidence 01122223333333333 5555568888999998765321 1344445555566654
Q ss_pred c--CCCCEEEec
Q 016140 230 I--DNKHLLEIG 239 (394)
Q Consensus 230 ~--dp~~~V~~g 239 (394)
. +.+.-|+..
T Consensus 118 ~~L~~~IkVst~ 129 (310)
T PF00332_consen 118 AGLSDQIKVSTP 129 (310)
T ss_dssp TT-TTTSEEEEE
T ss_pred cCcCCcceeccc
Confidence 3 344555543
No 215
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.57 E-value=1e+02 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.++.+++.+.+.|+..+|++...+ + .+.+...++.|+++|+.+...+
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALN--------------D--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCEEEEEE
Confidence 4578899999999999999964321 1 3678888899999999988765
No 216
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=35.41 E-value=51 Score=32.36 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..+|++.+.+.|+..||++..... .. .+..-+.-.+..++.+...++.|++.|+.|.+.+-+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSP-IH-LKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 457899999999999999653210 00 000011112567899999999999999999888743
No 217
>PLN02229 alpha-galactosidase
Probab=34.60 E-value=1.4e+02 Score=29.98 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=48.3
Q ss_pred EEEEEeeeccccccccCCCcchhhHHHHHHHH-----HHcCCCEEEEccccCCCCCCc-ccCCCC--CChhhHH-HHHHH
Q 016140 46 PFLFNGFNSYWMMNVASQPSQRYKVSDVFRQA-----AAAGLSVCRTWAFSDGGYGAL-QQSPGV--YNEPVFQ-GLDFV 116 (394)
Q Consensus 46 ~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~l-----k~~G~N~vRi~~~~~~~~~~~-~~~~g~--~~~~~l~-~ld~~ 116 (394)
+....|-|.+...... .+++.+.+..+.| ++.|.+.|=+ ++ .|..- ..+.|. .|++.|- .+..+
T Consensus 61 ~tPpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i---DD-gW~~~~rd~~G~l~~d~~rFP~G~k~l 133 (427)
T PLN02229 61 RTPQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI---DD-CWSNLKRDSKGQLVPDPKTFPSGIKLL 133 (427)
T ss_pred CCCCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE---cC-CcCCCCcCCCCCEEEChhhcCCcHHHH
Confidence 3445677743322222 2567777777774 8888887766 22 34311 111232 2455453 48899
Q ss_pred HHHHHHcCCEEEEecC
Q 016140 117 ISEARKYGIRLILSLS 132 (394)
Q Consensus 117 l~~a~~~Gi~vii~l~ 132 (394)
.+..+++||+.=|-..
T Consensus 134 adyiH~~GlKfGIy~d 149 (427)
T PLN02229 134 ADYVHSKGLKLGIYSD 149 (427)
T ss_pred HHHHHHCCCceEEecc
Confidence 9999999999877653
No 218
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=34.13 E-value=6.2e+02 Score=27.74 Aligned_cols=159 Identities=16% Similarity=0.212 Sum_probs=86.1
Q ss_pred chhhHHHHHHHHHHcCC--CEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhh
Q 016140 66 QRYKVSDVFRQAAAAGL--SVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQ 143 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~--N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~ 143 (394)
+++.+.+-++.+++..+ .++++=. + -|.. .-..-.+|++.+-..+.+++..++.||++++-+.-.-.. ..+.
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~lD~--~-~~~~-~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~--d~~~ 351 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFVLDI--D-FWMD-NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSPL 351 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEEEee--h-hhhc-cccceEECcccCCCHHHHHHHHHhcCceEEEEecccccc--CCch
Confidence 45667777888887775 4555511 0 0111 001234677778888899999999999999877421100 0011
Q ss_pred hHHHHHHcCCCC-------------CCCccc--ccCHHHHHHHHH-HHHHHHhcccccccccccCCCcEeEEEeccCCcc
Q 016140 144 YVNWARAAGASV-------------NSDDEF--YTNAIVKGYYKN-HVKKVLTRINTITRIAYKDDPTIMAWELINEARC 207 (394)
Q Consensus 144 y~~w~~~~g~~~-------------~~~~~~--~~~~~~~~~~~~-~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~ 207 (394)
|.. +...|--+ +....+ |++|++++.+.+ ..+.+. +-..-.-|.=+|||..
T Consensus 352 ~~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~------------d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 352 FKE-AIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLL------------DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHH-HHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHH------------hcCccEEEccCCCCcc
Confidence 111 11111111 111112 578999888885 323333 3333344667999987
Q ss_pred CCCC------CchH-----HHHHHHHHHHHhhccCC-CCEEEeccccc
Q 016140 208 QADY------SGKT-----LNNWVQEMASYVKSIDN-KHLLEIGLEGF 243 (394)
Q Consensus 208 ~~~~------~~~~-----~~~w~~~~~~~Ir~~dp-~~~V~~g~~g~ 243 (394)
.... +... ..-+.+...+++|+..| .+++.+.-+++
T Consensus 419 ~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 419 FDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred ccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 6321 1111 22346677888999854 55655544333
No 219
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=33.98 E-value=89 Score=29.71 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=85.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCc-ccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGAL-QQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~-~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
+.+++++.++.+++.|+.+==+++ ++ +|..- .-..-.+|++.+.....+++.+++.|+++++-++-.-. -..+.|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l-D~-~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~--~~~~~~ 97 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHL-DC-FWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA--QKSPLF 97 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEE-ec-ccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC--CCchhH
Confidence 567899999999999976543332 21 23210 00122457777888899999999999999998753210 011122
Q ss_pred HHHHHH-------cCCCC-----CCCccc--ccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCC
Q 016140 145 VNWARA-------AGASV-----NSDDEF--YTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQAD 210 (394)
Q Consensus 145 ~~w~~~-------~g~~~-----~~~~~~--~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~ 210 (394)
..-... .|.+. .....+ +++|++++.+.+.++.+.+- .+.+ -|.=+||+-....
T Consensus 98 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--Gid~----------~~~D~~e~~p~~~ 165 (308)
T cd06593 98 KEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDM--GVDC----------FKTDFGERIPTDV 165 (308)
T ss_pred HHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHh--CCcE----------EecCCCCCCCccc
Confidence 211000 01100 000111 57899998888888776542 1111 1223566532211
Q ss_pred ----C-Cch-----HHHHHHHHHHHHhhccCCC-CEEEec
Q 016140 211 ----Y-SGK-----TLNNWVQEMASYVKSIDNK-HLLEIG 239 (394)
Q Consensus 211 ----~-~~~-----~~~~w~~~~~~~Ir~~dp~-~~V~~g 239 (394)
. .+. ....+.+.+.+.+++..++ +++++.
T Consensus 166 ~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 166 VYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred cccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 0 111 1234566777788887665 466553
No 220
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.35 E-value=1e+02 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
..++.+++.+.+.|++.+|++..-+ .++.+...++.++++|+.+...+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~ln----------------d~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALN----------------DVRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecC----------------hHHHHHHHHHHHHHcCCEEEEEE
Confidence 4678899999999999999964321 14678888999999999988666
No 221
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.31 E-value=1.6e+02 Score=29.15 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCC-CCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPG-VYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g-~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.+..++..+.++..+-+.+++.++. +.|-++ .|.....+.++++.+..+++||.+.+--
T Consensus 295 s~e~a~~L~~llk~~~~~~~~VNLIp------yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~ 355 (373)
T PRK14459 295 QPWRADLLGKKLHGRGGGWVHVNLIP------LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRD 355 (373)
T ss_pred CHHHHHHHHHHHhhccCCCeEEEEEc------cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeC
Confidence 45667777777887743333332211 111122 3444556889999999999999998864
No 222
>PLN02692 alpha-galactosidase
Probab=33.12 E-value=2.6e+02 Score=28.02 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred CC-eEEEEEeeeccccccccCCCcchhhHHHHHHHH-----HHcCCCEEEEccccCCCCCCcc-cCCC--CCChhhH-HH
Q 016140 43 NG-SPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQA-----AAAGLSVCRTWAFSDGGYGALQ-QSPG--VYNEPVF-QG 112 (394)
Q Consensus 43 ~G-~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~l-----k~~G~N~vRi~~~~~~~~~~~~-~~~g--~~~~~~l-~~ 112 (394)
|| -+....|-|.+...... .+++.+.+..+.| ++.|.+.|=+ ++ .|.... .+.| ..|++.| +.
T Consensus 50 ngla~tPpmGWnSW~~~~~~---i~E~~i~~~ad~~~~~gl~~~Gy~yv~i---DD-gW~~~~rd~~G~~~~d~~kFP~G 122 (412)
T PLN02692 50 NGLGITPPMGWNSWNHFSCK---IDEKMIKETADALVSTGLSKLGYTYVNI---DD-CWAEIARDEKGNLVPKKSTFPSG 122 (412)
T ss_pred CcCcCCCcceEEchhhhCcc---cCHHHHHHHHHHHHhccchhcCcEEEEE---cC-CcCCCCCCCCCCeeeChhhcCCc
Confidence 55 34446788854332222 2566777777766 5556676555 22 242111 1122 2234444 45
Q ss_pred HHHHHHHHHHcCCEEEEec
Q 016140 113 LDFVISEARKYGIRLILSL 131 (394)
Q Consensus 113 ld~~l~~a~~~Gi~vii~l 131 (394)
|..+.+.++++||+.=|-.
T Consensus 123 ~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 123 IKALADYVHSKGLKLGIYS 141 (412)
T ss_pred HHHHHHHHHHCCCceEEEe
Confidence 8899999999999987765
No 223
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.11 E-value=58 Score=30.73 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+++++.+.+.|++.|++++... +.. .+..-+.--+..++.+..+++.|+++|+.|.+.+-+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S-~~h-~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGS-LKH-CTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCC-HHH-HHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 4689999999999999965211 000 000111123778999999999999999999988753
No 224
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=32.21 E-value=3.1e+02 Score=25.71 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=41.8
Q ss_pred hhHHHHHHHHH-HcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAA-AAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk-~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.++.-.+..+ +.|++.--+ .|.+...|...-..|..|..+|+..-++=++.+++|-+ ++.+
T Consensus 42 ~ile~~~k~~~~k~Gi~l~i~-~FtDY~~PN~AL~~gdiDaN~FQH~pyL~~~~k~~~~~-Lv~v 104 (268)
T COG1464 42 EILEVVVKPALKKKGLDLKIV-EFTDYVQPNEALADGDIDANAFQHKPYLDQFNKEHGGK-LVAV 104 (268)
T ss_pred HHHHHHHHHHHHhcCceEEEE-EecCCcchhHHHhcCCccchhhhchHHHHHHHHHcCCC-EEEE
Confidence 44554666555 669985444 56653223333357899999999999999999998887 4443
No 225
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.43 E-value=1.4e+02 Score=27.55 Aligned_cols=52 Identities=8% Similarity=0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEE
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLIL 129 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii 129 (394)
+++.|+.+.+.|++.|-++......|. +..++ ...++.+-+.++++||.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLS---EETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCC---HHHHHHHHHHHHHcCCCEEE
Confidence 668999999999999999764331111 11222 24566777778889988654
No 226
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=31.11 E-value=77 Score=28.91 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=40.5
Q ss_pred EEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcC
Q 016140 48 LFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYG 124 (394)
Q Consensus 48 ~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~G 124 (394)
+.+|.+..|... ....+++|++.++++|+.-|=+-.. ...|..| +..+.+++++|.-.+
T Consensus 59 RPRgGdFvY~~~------E~~iM~~DI~~~~~lG~~GVV~G~l---------t~dg~iD---~~~le~Li~aA~gL~ 117 (241)
T COG3142 59 RPRGGDFVYSDD------ELEIMLEDIRLARELGVQGVVLGAL---------TADGNID---MPRLEKLIEAAGGLG 117 (241)
T ss_pred ecCCCCcccChH------HHHHHHHHHHHHHHcCCCcEEEeee---------cCCCccC---HHHHHHHHHHccCCc
Confidence 455666544421 3467899999999999998877433 2356667 677888888887433
No 227
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=30.98 E-value=4.6e+02 Score=24.73 Aligned_cols=62 Identities=10% Similarity=0.208 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEe
Q 016140 161 FYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEI 238 (394)
Q Consensus 161 ~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~ 238 (394)
+..++..++.+.+-+..++++ |+=+--.+-||-. ...+.+.+..+++++...+++. +..+++
T Consensus 82 ~l~~~~~R~~fi~~iv~~~~~--------~~~dGidiD~E~~------~~~d~~~~~~fl~eL~~~l~~~--~~~lsv 143 (298)
T cd06549 82 LLADPSARAKFIANIAAYLER--------NQADGIVLDFEEL------PADDLPKYVAFLSELRRRLPAQ--GKQLTV 143 (298)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--------hCCCCEEEecCCC------ChhHHHHHHHHHHHHHHHhhhc--CcEEEE
Confidence 456888999888888888877 5544444445422 1113456788888888888765 334444
No 228
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.66 E-value=71 Score=31.19 Aligned_cols=60 Identities=18% Similarity=0.016 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
..+|++.+.+.|+..|++++.... .. .+.+-+.-.++.++.+.++++.|+++|++|...+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd-~h-~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASE-SF-SKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 468999999999999999652210 00 0111112237789999999999999999997665
No 229
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.20 E-value=82 Score=28.88 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcc-cCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQ-QSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~-~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+++++.+++.|+..||+...... ... ..-+.=.+..++.+...++.|+++|+.+.+.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~---~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE---THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999543210 000 000111244688899999999999999999874
No 230
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.19 E-value=4.4e+02 Score=24.22 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEe
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILS 130 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~ 130 (394)
.....+.-+.+++.|+.+.=+.......++...+.+ ..-+..++.+.++++.|++.|...+..
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~-~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDP-ATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCH-HHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344555566777788776544211000010000111 111356889999999999999999864
No 231
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=29.91 E-value=64 Score=18.52 Aligned_cols=15 Identities=27% Similarity=0.478 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhcc
Q 016140 10 FLWAIALLLHLASAQ 24 (394)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (394)
+++.++++++++.|+
T Consensus 10 il~~l~a~~~LagCs 24 (25)
T PF08139_consen 10 ILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHhhcc
Confidence 344444555566665
No 232
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.88 E-value=90 Score=30.81 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHHHcC-CCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCChhhh
Q 016140 66 QRYKVSDVFRQAAAAG-LSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G-~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg~~~y 144 (394)
.+..|+-||+.+.++= =|++=+.+.+++ .|--+.|++ +.|.++.+.|+++||.||-|=...+..+|+.+.+
T Consensus 181 Pe~~weIDL~~veal~DENT~AivviNP~-----NPcGnVys~---~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfv 252 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENTVAIVVINPN-----NPCGNVYSE---DHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFV 252 (447)
T ss_pred CcccceechHHHHHhhccCeeEEEEeCCC-----CCCcccccH---HHHHHHHHHHHHhCCeEEehhhcceeecCCCCcc
Confidence 3567888888887743 588888665432 222247774 5677889999999999999865555566776654
Q ss_pred H
Q 016140 145 V 145 (394)
Q Consensus 145 ~ 145 (394)
+
T Consensus 253 p 253 (447)
T KOG0259|consen 253 P 253 (447)
T ss_pred c
Confidence 4
No 233
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.87 E-value=76 Score=29.74 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 72 DVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 72 ~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
++++.+.+.|++.||+...... .. .+...+.-.+..++.+...++.|+++|+.|.+..
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWD-LH-VTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 6788999999999999542110 00 0111121125678999999999999999988853
No 234
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=29.83 E-value=74 Score=31.25 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=61.8
Q ss_pred hHHHHHHHHHH--cCCCEEEE-ccccCC-----CCCCcccCC---CCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 016140 69 KVSDVFRQAAA--AGLSVCRT-WAFSDG-----GYGALQQSP---GVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHD 137 (394)
Q Consensus 69 ~~~~d~~~lk~--~G~N~vRi-~~~~~~-----~~~~~~~~~---g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~ 137 (394)
.+++.+-++++ .|+|+=|. ++|+-. .-..+-|.. |.-.+=+-.+.++++..|+++|+..
T Consensus 267 Qm~EIiy~lrdhsvGLNCGRWDyifS~iKt~qnh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~tCH~RGvHA---------- 336 (552)
T KOG1261|consen 267 QMEEIIYQLRDHSVGLNCGRWDYIFSYIKTFQNHPDHLLPDRVQVGMTSPFMRAYSKRLINTCHRRGVHA---------- 336 (552)
T ss_pred hHHHHHHHHHhhcccccccchHHHHHHHHHHhhCccccCCccceeccCcHHHHHHHHHHHHHHHhhcchh----------
Confidence 35667777774 78899887 444310 000111111 2223445578899999999999963
Q ss_pred CCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHH--hcccccccccccCCCcEeEEEeccCCc
Q 016140 138 FGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVL--TRINTITRIAYKDDPTIMAWELINEAR 206 (394)
Q Consensus 138 ~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv--~r~~~~~~~~~~~~p~I~~wel~NEp~ 206 (394)
+||+.. ..| .-.||.+.+.....++.=- +-.|...|. |.-||.++ -+.||.-
T Consensus 337 MGGMAA--------qIP------IkdDp~ANekA~~lVr~DK~RE~t~GHDGt-WvAHPgL~--Pic~evF 390 (552)
T KOG1261|consen 337 MGGMAA--------QIP------IKDDPKANEKAMALVRNDKIREVTNGHDGT-WVAHPGLA--PICNEVF 390 (552)
T ss_pred hccccc--------cCc------cCCCcchhHHHHHHHhhhhhhhhhcCCCCc-eecCccch--HHHHHHH
Confidence 456421 122 2235555555555444422 225566665 77888875 4556553
No 235
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=29.81 E-value=58 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=15.0
Q ss_pred HHHHHHHhhccCCCCEEEec
Q 016140 220 VQEMASYVKSIDNKHLLEIG 239 (394)
Q Consensus 220 ~~~~~~~Ir~~dp~~~V~~g 239 (394)
+.++...|++.||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 47788999999999999874
No 236
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=29.67 E-value=1.7e+02 Score=26.41 Aligned_cols=65 Identities=11% Similarity=0.237 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
....++.-++.+++.|+..+|++...+. . ..+..-+.-.+..++.+.++++.|+++|+.|.+.+-
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSD-L-HIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSH-H-HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccH-H-HHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 3456777788888999999999652210 0 000001111256789999999999999999977763
No 237
>PRK09989 hypothetical protein; Provisional
Probab=29.65 E-value=4.4e+02 Score=24.04 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCE
Q 016140 166 IVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHL 235 (394)
Q Consensus 166 ~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~ 235 (394)
...+...+.++.++.. .++....++.|..|....... ...=..++...|+++++..+
T Consensus 117 ~~~~~~~~~l~~l~~~--------a~~~gv~l~lE~l~~~~~~~~-----~~~~~~~~~~ll~~v~~~~v 173 (258)
T PRK09989 117 RYRAVFIDNLRYAADR--------FAPHGKRILVEALSPGVKPHY-----LFSSQYQALAIVEEVARDNV 173 (258)
T ss_pred HHHHHHHHHHHHHHHH--------HHhcCCEEEEEeCCCCCCCCC-----ccCCHHHHHHHHHHcCCCCe
Confidence 4455566777777776 556666666776664211100 00013556677777775443
No 238
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=29.55 E-value=2.6e+02 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=28.8
Q ss_pred CeEEEEEeeecccccccc--CCCcchhhHHHHHH-HHHHcCCCEEEEcc
Q 016140 44 GSPFLFNGFNSYWMMNVA--SQPSQRYKVSDVFR-QAAAAGLSVCRTWA 89 (394)
Q Consensus 44 G~~~~~~G~N~~~~~~~~--~~~~~~~~~~~d~~-~lk~~G~N~vRi~~ 89 (394)
|.++.+.|.=....-... ..+.+....+.+++ +.+++|.|.|=+.-
T Consensus 60 ~~~~~~LG~V~GesCq~~~~~~p~s~~~Ar~~~r~kAa~~gaN~Vvl~~ 108 (133)
T PRK10781 60 GKPFRDLGEVSGESCQASNQDSPPSIPTARKRMQINASKMKANAVLLHS 108 (133)
T ss_pred CCCCceeeeEEccccccCCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 677888877632222111 12335666777776 66789999998843
No 239
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=29.51 E-value=5.2e+02 Score=24.93 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=40.8
Q ss_pred cccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhcc
Q 016140 159 DEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSI 230 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 230 (394)
..|+++|.+.+++.+.++.-.+. ..-++.++.+..--=|....+. ++.+...+++.+..|++.
T Consensus 157 ~~~~~~p~yI~a~a~~I~~~~~~--------~~~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 157 PDYYDEPLYIEALADSIREKLAK--------HPRDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEA 219 (320)
T ss_pred cCccCChHHHHHHHHHHHHHHHh--------cCCCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHH
Confidence 34677888888888877776654 3323455545544444433222 567888999999999874
No 240
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.41 E-value=80 Score=31.19 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.++|++.+.+.|+..||++..... .. .+..-+.--+..++.+...++.|++.|+.|.++.-
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd-~h-~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSD-IH-IKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 367899999999999999652210 00 01111111367889999999999999999998763
No 241
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=29.27 E-value=1.3e+02 Score=28.98 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHHcCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCccccc-CHHHHHHHHHHHHHHHhcccccccccccCCC
Q 016140 116 VISEARKYGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYT-NAIVKGYYKNHVKKVLTRINTITRIAYKDDP 194 (394)
Q Consensus 116 ~l~~a~~~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p 194 (394)
.+++|+++|++|+=++...|. ++ ..|.. .+.. +++-...+.+.+.+|++. |+=+-
T Consensus 47 widaAHrnGV~vLGTiife~~--~~----~~~~~----------~ll~~~~~g~~~~A~kLi~ia~~--------yGFDG 102 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWG--GG----AEWCE----------ELLEKDEDGSFPYADKLIEIAKY--------YGFDG 102 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE--------HHHHH----------HHT---TTS--HHHHHHHHHHHH--------HT--E
T ss_pred hHHHHHhcCceEEEEEEecCC--ch----HHHHH----------HHHcCCcccccHHHHHHHHHHHH--------cCCCc
Confidence 589999999999988765442 12 22322 1122 222233446667778887 76554
Q ss_pred cEeEEEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEE
Q 016140 195 TIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLE 237 (394)
Q Consensus 195 ~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~ 237 (394)
-++-+|....+. ...+.+..|++++.+..++ .|...|.
T Consensus 103 w~iN~E~~~~~~----~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 103 WLINIETPLSGP----EDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp EEEEEEESSTTG----GGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred eEEEecccCCch----hHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 333333332221 1246788999999999998 7776654
No 242
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.26 E-value=1.7e+02 Score=25.71 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 73 VFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+++.+.+.|.+.|=++... + -..+.++++.|+++|+.+++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~----------~-------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA----------D-------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC----------C-------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 5788899999988774321 1 134568899999999999998754
No 243
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.10 E-value=71 Score=29.11 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHH----HHHcCCEEEEecCC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISE----ARKYGIRLILSLSN 133 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~----a~~~Gi~vii~l~~ 133 (394)
.+-.+|++.|+..|+..|=...+++ -|-..-+..++.+++++.. |.++||++-+.+.-
T Consensus 11 ~r~~eDlekMa~sGI~~Vit~AhdP--------~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 11 VRGFEDLEKMALSGIREVITLAHDP--------YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred cccHHHHHHHHHhChhhhhhcccCC--------CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 3456899999999998776655432 1222335667777887764 99999999988753
No 244
>PRK05434 phosphoglyceromutase; Provisional
Probab=28.57 E-value=1.9e+02 Score=29.91 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..-+...++.+++.|++-|+++++-+|+- ..| ..++.+|+++.+.++++|..-|-++.
T Consensus 127 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD----~~p----~s~~~~i~~l~~~~~~~~~~~iasv~ 184 (507)
T PRK05434 127 IDHLFALLELAKEEGVKKVYVHAFLDGRD----TPP----KSALGYLEELEAKLAELGVGRIASVS 184 (507)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCC----CCc----hhHHHHHHHHHHHHHHhCCeeEEEEe
Confidence 35677889999999999999999888741 122 55788899999999998886666663
No 245
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=28.46 E-value=4.9e+02 Score=24.20 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 75 RQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 75 ~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..+++.|++.|=+-+... +-.++++ =+.+..-+..|.++||.+|+++..
T Consensus 82 ~mL~d~G~~~viiGHSER---------R~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvGE 130 (251)
T COG0149 82 EMLKDLGAKYVLIGHSER---------RLYFGET-DELIAKKVKAAKEAGLTPILCVGE 130 (251)
T ss_pred HHHHHcCCCEEEECcccc---------ccccccc-hHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457899999998844321 1011111 134557889999999999999854
No 246
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=28.40 E-value=1.2e+02 Score=30.48 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC-hhhh
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGG-RPQY 144 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~gg-~~~y 144 (394)
+.+++.+.++.+++.|+.+==+++- . .|.. ....-.+|++.+..+..+++.++++|+++++.++-.-..... ...|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD-~-~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWID-D-DYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE--G-GGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCccceecc-c-cccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 4678899999999999875555431 1 1211 111235678888899999999999999999887532111111 1133
Q ss_pred HHHHHHcCCCCC--CC-----------c--ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCccC-
Q 016140 145 VNWARAAGASVN--SD-----------D--EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQ- 208 (394)
Q Consensus 145 ~~w~~~~g~~~~--~~-----------~--~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~wel~NEp~~~- 208 (394)
..... .|.-+. .. . .-+++|++++.+.+.++.+.+. ++- =.-|.=+|||...
T Consensus 118 ~~~~~-~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv---dg~w~D~~E~~~~~ 185 (441)
T PF01055_consen 118 DEAKE-KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGV---DGWWLDFGEPSSFD 185 (441)
T ss_dssp HHHHH-TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST----SEEEEESTTTBSST
T ss_pred hhHhh-cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCC---ceEEeecCCccccc
Confidence 32221 121110 00 1 1157899999998888887764 222 1235668898861
Q ss_pred ------CC---CCc-------h-HHHHHHHHHHHHhhccC-CCCEEEeccccc
Q 016140 209 ------AD---YSG-------K-TLNNWVQEMASYVKSID-NKHLLEIGLEGF 243 (394)
Q Consensus 209 ------~~---~~~-------~-~~~~w~~~~~~~Ir~~d-p~~~V~~g~~g~ 243 (394)
.+ .++ . -...+.+...+.+++.+ ..++++..-+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~ 238 (441)
T PF01055_consen 186 SNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGW 238 (441)
T ss_dssp TTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEE
T ss_pred ccccCcccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccC
Confidence 11 111 1 12344566677777654 455555433333
No 247
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.37 E-value=72 Score=31.32 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+|++.+.+.|+..||++..... .. .+..-+.-.+..++.+...++.|+++|+.|.+.+-+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd-~~-~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed 135 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSD-LQ-IEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED 135 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCH-HH-HHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 57899999999999999653210 00 000001112567888999999999999998887643
No 248
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.87 E-value=1.6e+02 Score=26.93 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..++.++.+++.|++.|=++.. | .+..+.+.++++.|+++||.+++.++
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dl-----------p----~e~~~~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDL-----------L----IDYPDDLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCC-----------C----CCcHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4667788899999998877421 0 01245678899999999999999885
No 249
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.86 E-value=1.4e+02 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+-++..++.+.+.|+..+|++...+ .++.+...++.|+++|+.|...+
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~ln----------------d~~n~~~~i~~ak~~G~~v~~~i 142 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALN----------------DIRNLEKSIEVAKKHGAHVQGAI 142 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCC----------------HHHHHHHHHHHHHHCCCEEEEEE
Confidence 4467779999999999999964211 16778889999999999988665
No 250
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=27.66 E-value=4.9e+02 Score=23.97 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=34.0
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
...|++.|++.|=+-+... +-.|++ .-+.+.+-+..|.++||.+|+++..
T Consensus 77 ~~mL~d~G~~~viiGHSER---------R~~f~E-td~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSER---------RQYFGE-TDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEESCHHH---------HHHST--BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEeccccc---------cCcccc-ccHHHHHHHHHHHHCCCEEEEEecc
Confidence 4578999999998844321 001112 1367788899999999999999853
No 251
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.39 E-value=1.6e+02 Score=30.02 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
-++.+++|-+.|+|++|+. |+.|++ +..-+.++.+=+.+++.|-.|=|-+
T Consensus 19 s~e~l~~li~aG~nV~RlN-fSHG~~-----------e~h~~~i~~vR~~~~~~~~~vaIl~ 68 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLN-FSHGDH-----------EEHKKRIDNVREAAEKLGRPVAILL 68 (477)
T ss_pred CHHHHHHHHHccCcEEEEe-cCCCCh-----------HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 4578899999999999993 555532 3445777777777777776655443
No 252
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=27.10 E-value=1.5e+02 Score=28.63 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
-++-++.+.+.|++-||++.- ..++.........+..|+++|+-|-+.+.
T Consensus 123 ~~e~l~~L~eAGLDEIRfHp~-------------~~~~~~~e~~i~~l~~A~~~g~dvG~EiP 172 (353)
T COG2108 123 TEEALKALAEAGLDEIRFHPP-------------RPGSKSSEKYIENLKIAKKYGMDVGVEIP 172 (353)
T ss_pred CHHHHHHHHhCCCCeEEecCC-------------CccccccHHHHHHHHHHHHhCccceeecC
Confidence 366788888999999998531 12233456666778889999998877663
No 253
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=26.76 E-value=89 Score=27.08 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEE
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi 128 (394)
+-.+++|++.+|++|++.|=+.. .+. |=..-.+-.+.+.++++||.++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvtl~-~~~-------------EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVTLL-TDH-------------ELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE-S--HH-------------HHHHTT-TTHHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEEeC-cHH-------------HHHHcCCccHHHHHHHcCCEEE
Confidence 34689999999999999985522 110 1011113357899999999764
No 254
>PF14881 Tubulin_3: Tubulin domain
Probab=26.51 E-value=3.1e+02 Score=23.93 Aligned_cols=55 Identities=24% Similarity=0.570 Sum_probs=39.5
Q ss_pred hhhHHH-HHHHHHHHHH-cCCEEEEecCCCCCCCCChhhhHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHHHhcccc
Q 016140 107 EPVFQG-LDFVISEARK-YGIRLILSLSNNYHDFGGRPQYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINT 184 (394)
Q Consensus 107 ~~~l~~-ld~~l~~a~~-~Gi~vii~l~~~~~~~gg~~~y~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lv~r~~~ 184 (394)
++.+++ |..++++|+. .|+-++.++.+.| ||. ...+++.|...
T Consensus 57 ~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gw---gGf-----------------------------as~~Le~L~DE--- 101 (180)
T PF14881_consen 57 EDFFDRDLRFFLEECDSLQGFQVLTDVDDGW---GGF-----------------------------ASSLLEHLRDE--- 101 (180)
T ss_pred hHHHHHHHHHHHHHcccccceEEEecCCCch---HhH-----------------------------HHHHHHHHHHH---
Confidence 455665 8899999976 5999999998765 442 13567778888
Q ss_pred cccccccCCCcEeEEEe
Q 016140 185 ITRIAYKDDPTIMAWEL 201 (394)
Q Consensus 185 ~~~~~~~~~p~I~~wel 201 (394)
|.+.+.|.+|.+
T Consensus 102 -----y~k~~i~~~~~~ 113 (180)
T PF14881_consen 102 -----YPKKPIIWVWGL 113 (180)
T ss_pred -----cCCCceEEeecC
Confidence 888776566655
No 255
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=3e+02 Score=27.05 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=33.2
Q ss_pred CeEEE--EEeeeccccccccCCCcchhhHHHHHHHHHHcCCC--EEEEccccCCCCCCcccCCCC
Q 016140 44 GSPFL--FNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLS--VCRTWAFSDGGYGALQQSPGV 104 (394)
Q Consensus 44 G~~~~--~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N--~vRi~~~~~~~~~~~~~~~g~ 104 (394)
|+.|. +.|-|-||--.. ..++.--.+.++..|+. .|=++.+++....+..|.||.
T Consensus 44 gt~waVLVAGSngyyNYRH------QADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NPrpG~ 102 (477)
T KOG1348|consen 44 GTRWAVLVAGSNGYYNYRH------QADVCHAYQILRKGGIKEENIVVMMYDDIANNEENPRPGV 102 (477)
T ss_pred ceeEEEEEecCCcccchhh------hhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCCCCce
Confidence 45543 568887665322 23566678899999984 233345655445556666763
No 256
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=26.09 E-value=4e+02 Score=25.26 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=47.5
Q ss_pred cEeEEEeccCCccCCCC-C---chHHHHHHHHHHHHhhcc-CCCCEEEeccccc--cCCCCCCccCCCCCCCccccchhh
Q 016140 195 TIMAWELINEARCQADY-S---GKTLNNWVQEMASYVKSI-DNKHLLEIGLEGF--YGDSIPDKKQFNPGYQVGTDFISN 267 (394)
Q Consensus 195 ~I~~wel~NEp~~~~~~-~---~~~~~~w~~~~~~~Ir~~-dp~~~V~~g~~g~--~~~~~~~~~~~n~~~~~g~~~~~~ 267 (394)
.|-+|.|+-|....... + .=....-++++++.+|++ .|...|+.+.. | +....+...+-...+ .+.+.
T Consensus 19 gVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAAD-WsEY~~~~p~dg~gd~~f----~LDpL 93 (299)
T PF13547_consen 19 GVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAAD-WSEYFGYQPADGSGDVYF----HLDPL 93 (299)
T ss_pred CCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEecc-CHHhcCcCCCCCCCcccc----cCccc
Confidence 46789999999865321 1 112234458888999986 58888887642 2 211111000000000 01123
Q ss_pred cCCCCccEEeeecCCC
Q 016140 268 NMIKEIDFTTIHAYPD 283 (394)
Q Consensus 268 ~~~~~~D~~s~H~Y~~ 283 (394)
.+.++|||+.+..|..
T Consensus 94 Wa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 94 WADPNIDFIGIDNYFP 109 (299)
T ss_pred ccCCcCCEEEeecccc
Confidence 4578999999999963
No 257
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=26.06 E-value=4.7e+02 Score=23.29 Aligned_cols=51 Identities=10% Similarity=0.000 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIR 126 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~ 126 (394)
++..++..++.....|-..|+|-+- .+ .+ + ....-+...++-+.+.+.|+.
T Consensus 58 q~~~l~~f~~~~~~~~~~~v~i~~p-sg-----~~-n---~~aa~~~~~~i~~~l~~~Gv~ 108 (203)
T PF09476_consen 58 QRDRLRGFASRYGRRGGGRVTIDVP-SG-----SA-N---ARAASAAAAQIRALLAAAGVP 108 (203)
T ss_pred HHHHHHHHHHHHhccCCCeEEEecC-CC-----Cc-c---hHHHHHHHHHHHHHHHHcCCC
Confidence 6778888999999999999998221 11 00 0 133567777888899999986
No 258
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.90 E-value=5e+02 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHcCCCEEEEc
Q 016140 69 KVSDVFRQAAAAGLSVCRTW 88 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~ 88 (394)
.+++-++.+++.|++.|-++
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec
Confidence 46666777777777777664
No 259
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=25.82 E-value=3e+02 Score=29.33 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=46.1
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCC-------c-------------c------cCC--CCCChhhHHHHHHHH
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGA-------L-------------Q------QSP--GVYNEPVFQGLDFVI 117 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~-------~-------------~------~~~--g~~~~~~l~~ld~~l 117 (394)
+.+++.+.++.|++.++|++.++.-.+..|+. + . |++ |-|+ -+.+..++
T Consensus 276 s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfyt---qd~~relv 352 (732)
T COG3525 276 STDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYT---QDDIRELV 352 (732)
T ss_pred CHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCccc---HHHHHHHH
Confidence 56789999999999999999997655543320 0 0 011 2334 25677899
Q ss_pred HHHHHcCCEEEEecC
Q 016140 118 SEARKYGIRLILSLS 132 (394)
Q Consensus 118 ~~a~~~Gi~vii~l~ 132 (394)
+.|.+++|.|++++.
T Consensus 353 ~yAsar~ItviPeiD 367 (732)
T COG3525 353 AYASARQITVIPEID 367 (732)
T ss_pred HHHhhcCceecCCcC
Confidence 999999999998874
No 260
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD. This family consists of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function is not known.
Probab=25.63 E-value=4.8e+02 Score=23.21 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRL 127 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~v 127 (394)
++.+++..++.....|-..|++-+ |. ...-+...++-..+.+.|+..
T Consensus 59 qr~~l~~f~~~~~~~g~~~i~i~~------------ps---gaa~~~~~~ir~~L~~~Gv~~ 105 (198)
T TIGR02522 59 QQDQLLGFLKDWGRASAQTLTLII------------PS---AAAEAMAGEIRRVLAASGVGA 105 (198)
T ss_pred HHHHHHHHHHHHhhcCCceEEEec------------Ch---hHHHHHHHHHHHHHHHcCCCh
Confidence 667888889999999999998821 11 134566777888888999874
No 261
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=25.22 E-value=2.4e+02 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEE
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRT 87 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi 87 (394)
.+++..+.|+| |+..... .+...+.+-+..++.+|+..+.+
T Consensus 11 ~~~~~~~I~lN---PS~A~~~-~~D~T~~~~~~~a~~~gyg~~~i 51 (136)
T PF07799_consen 11 GKPPLLFIGLN---PSTADAE-KDDPTIRRCINFARRWGYGGVII 51 (136)
T ss_pred CCCEEEEEEeC---CCCCCCc-CCCHHHHHHHHHHhhcCCCeEEE
Confidence 57888899999 5443321 13456788888899999999888
No 262
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.88 E-value=1.4e+02 Score=23.81 Aligned_cols=43 Identities=37% Similarity=0.597 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEE
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLI 128 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi 128 (394)
..+.+.+.++.+.+.|+.. +|+. +|.. -.++++.|+++||+++
T Consensus 64 ~~~~~~~~v~~~~~~g~~~--v~~~-----------~g~~-------~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKA--VWLQ-----------PGAE-------SEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SE--EEE------------TTS---------HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCCE--EEEE-----------cchH-------HHHHHHHHHHcCCEEE
Confidence 5678899999999999884 4432 2212 2367899999999976
No 263
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.85 E-value=5.3e+02 Score=24.98 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=56.0
Q ss_pred EEeCCeEEECCeEEEEE--eeeccccccccCCCcchhhHHHHHHHHHHcCCCEEEEcc-ccCCC-C-----CCccc---C
Q 016140 34 QTRGTQFVLNGSPFLFN--GFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWA-FSDGG-Y-----GALQQ---S 101 (394)
Q Consensus 34 ~~~g~~~~~~G~~~~~~--G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N~vRi~~-~~~~~-~-----~~~~~---~ 101 (394)
++.++.|--+.+|+.+. |.| | .++.+...+.++.+++.|+++|-+=. +.... . .+++. .
T Consensus 3 ~Ig~r~i~~~~~~~iIAEig~N-H--------nG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~ 73 (347)
T COG2089 3 KIGNRTIGKDKKPFIIAEIGAN-H--------NGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLW 73 (347)
T ss_pred eeCceeecCCCCcEEEeeeccc-c--------cCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCcccccccc
Confidence 44455555566776665 666 1 12567888999999999999999833 11100 0 00100 0
Q ss_pred CCC--C-----ChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 102 PGV--Y-----NEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 102 ~g~--~-----~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.++ | -+.-++..-.+.+.|++.||-.+-+.++
T Consensus 74 ~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SSPfd 112 (347)
T COG2089 74 DKVSLYELYEEAETPLEWHAQLKEYARKRGIIFFSSPFD 112 (347)
T ss_pred ccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEecCCC
Confidence 000 0 1223567778999999999998888764
No 264
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.67 E-value=2.5e+02 Score=28.38 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
+.+.+++-++..++.|.+ +|..++.+ +-.|.-..|+ -+.+.++++.|+++|+.+|.|=.
T Consensus 183 ~~~~le~a~~~a~~~~~~-vk~lll~n----P~NPtG~~~s---~e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 183 TPQALEAAYQEAEAANIR-VRGVLITN----PSNPLGATVQ---RSVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred CHHHHHHHHHHHHHhCCC-eeEEEEeC----CCCCcCcccC---HHHHHHHHHHHHHCCCEEEEecc
Confidence 456677777777777766 46533332 1111112455 45677889999999999999853
No 265
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=24.62 E-value=1.3e+02 Score=25.71 Aligned_cols=82 Identities=22% Similarity=0.213 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHhhccC----CCCCCCcEEEe-CCeEEECCeEEEEEeeecccccc-------ccCCCcchhhHHHH
Q 016140 6 AKFSFLWAIALLLHLASAQT----LPAQAGFVQTR-GTQFVLNGSPFLFNGFNSYWMMN-------VASQPSQRYKVSDV 73 (394)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~-g~~~~~~G~~~~~~G~N~~~~~~-------~~~~~~~~~~~~~d 73 (394)
||-+.|++++++++...+-+ .....|.|.+. .+.|+++|+.+.+.--|...+.. .......++.-...
T Consensus 1 Mkk~~l~~~~~~~~p~~~~AHnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~l 80 (184)
T COG3054 1 MKKRKLLALLCLLLPMMASAHNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATL 80 (184)
T ss_pred CchhhHHHHHHHHhHHHHHHhhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHH
Confidence 44455555554443322111 23556777775 45888888766444333111100 00011134555677
Q ss_pred HHHHHHcCCCEEEE
Q 016140 74 FRQAAAAGLSVCRT 87 (394)
Q Consensus 74 ~~~lk~~G~N~vRi 87 (394)
++.+|+..++..|.
T Consensus 81 ieaIk~a~fp~~~Y 94 (184)
T COG3054 81 IEAIKSAKFPHDRY 94 (184)
T ss_pred HHHHHhccCChHHc
Confidence 88899998887775
No 266
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.46 E-value=2.9e+02 Score=27.05 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=58.9
Q ss_pred CeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCC-------EEEEccccC---CCCCCcccC---CCCCC-hhh
Q 016140 44 GSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLS-------VCRTWAFSD---GGYGALQQS---PGVYN-EPV 109 (394)
Q Consensus 44 G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N-------~vRi~~~~~---~~~~~~~~~---~g~~~-~~~ 109 (394)
.+...+.|=+.- .+.+...+.-+.+++++.. ++|++..-+ .+|..+... +|.++ +..
T Consensus 52 ~rllvIvGPCSI---------hd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~G 122 (356)
T PRK12822 52 PRLLVIIGPCSI---------HDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKG 122 (356)
T ss_pred CCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHH
Confidence 355556665521 1557788888899999998 599965432 136655333 35666 789
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 110 FQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
|..+.+++....+.||-+.-++++.
T Consensus 123 L~i~R~ll~~~~~~GlPvatE~ld~ 147 (356)
T PRK12822 123 LRLARQLLLSINTLGLATATEFLDT 147 (356)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeccc
Confidence 9999999999999999999888763
No 267
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=24.40 E-value=2.5e+02 Score=28.92 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..-+...++.+++.|++-|+++.|-+|+- ..| ..++.+|.++.+.+++.|..-|-++.
T Consensus 123 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD----~~p----~s~~~~~~~l~~~~~~~~~~~iasv~ 180 (501)
T TIGR01307 123 IDHLIALIELAAERGIEKVVLHAFTDGRD----TAP----KSAESYLEQLQAFLKEIGNGRIATIS 180 (501)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCC----CCc----hhHHHHHHHHHHHHHHhCCEEEEEEe
Confidence 45678889999999999999999888742 112 55688888888888887876666663
No 268
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=24.29 E-value=1.5e+02 Score=30.09 Aligned_cols=60 Identities=12% Similarity=-0.038 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcC-CEEEEecCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYG-IRLILSLSN 133 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~G-i~vii~l~~ 133 (394)
-++.++.+++.|+|-|-+-+-+ +. +.+...-|+ ....+.+.+.++.++++| +.|.+|+..
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQS-f~-d~vLk~lgR--~~~~~~~~~~i~~l~~~g~~~v~~DlI~ 222 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQS-FN-TQVRRRAGR--KDDREEVLARLEELVARDRAAVVCDLIF 222 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCc-CC-HHHHHHhCC--CCCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 3567999999999966663211 00 000000011 112455667888999999 788898853
No 269
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=3.1e+02 Score=24.66 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=52.7
Q ss_pred cEEEeCCeEEECCeEEEEE--eeecc--ccc--cccC----CCcchhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccC
Q 016140 32 FVQTRGTQFVLNGSPFLFN--GFNSY--WMM--NVAS----QPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQS 101 (394)
Q Consensus 32 ~v~~~g~~~~~~G~~~~~~--G~N~~--~~~--~~~~----~~~~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~ 101 (394)
|-++.|....+.-..+|++ |.|+. |-. .... .++.....++.++.+++.+...-=+ .+. |+ +
T Consensus 10 F~siQGEG~~~Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V-~lT-GG------E 81 (212)
T COG0602 10 FDSIQGEGKNIGRPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGV-SLT-GG------E 81 (212)
T ss_pred EEEEecCcccccceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceE-EEe-CC------c
Confidence 3455666555554556666 99842 211 1111 2346677888899999977664422 222 22 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 102 PGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 102 ~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
| -....+..+++..++.|+++.+.-
T Consensus 82 P-----~~~~~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 82 P-----LLQPNLLELLELLKRLGFRIALET 106 (212)
T ss_pred C-----CCcccHHHHHHHHHhCCceEEecC
Confidence 2 112357889999999999999986
No 270
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=24.08 E-value=1.9e+02 Score=26.30 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
...++..++.++++|+++|-+ ++|. .++ ..+..-++++.|.+.|+.|.-.+.
T Consensus 89 ~~kvdeyl~e~~~lGfe~iEI---S~G~-i~m----------~~eek~~lIe~a~d~Gf~vlsEvG 140 (258)
T COG1809 89 QDKVDEYLNEAKELGFEAIEI---SNGT-IPM----------STEEKCRLIERAVDEGFMVLSEVG 140 (258)
T ss_pred cccHHHHHHHHHHcCccEEEe---cCCe-eec----------chHHHHHHHHHHHhcccEEehhhc
Confidence 456889999999999999998 3431 111 145566889999999999987763
No 271
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=23.70 E-value=6.2e+02 Score=23.81 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHcCCCEEEE-cc--ccCCCCCCcccCCCCCChh--hHHHHHHHHHHHHHcCCEEEEecC
Q 016140 76 QAAAAGLSVCRT-WA--FSDGGYGALQQSPGVYNEP--VFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 76 ~lk~~G~N~vRi-~~--~~~~~~~~~~~~~g~~~~~--~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+.+-.+++|-| |+ +..++++.+.-....-... ....|-.-|..|++.|++|+|.+.
T Consensus 19 ~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 19 YCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred HhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEcc
Confidence 345566899988 32 2222233222111110100 245788889999999999999984
No 272
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.48 E-value=1.3e+02 Score=28.30 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+|++.+.+.|+..|+++..... .. .+.+-+.--+..++.+...++.|+++|+.|.+.+-
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd-~~-~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~ 135 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASE-TF-SQKNINCSIAESLERFEPVAELAKAAGLRVRGYVS 135 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 56899999999999999653211 00 00011111266788999999999999999988774
No 273
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=23.15 E-value=2.7e+02 Score=29.21 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHHcCCCEEEEc--cccCCCCCCcccCCC----CC-----ChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTW--AFSDGGYGALQQSPG----VY-----NEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~--~~~~~~~~~~~~~~g----~~-----~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.+..++.|+.|+++.+|.|-++ .+..- .++-..++ .+ .+-..+.+...|+.|+++||+++.--
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~--~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHH--KPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTT--B-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccC--CcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 45789999999999999999993 22110 11211111 11 13457889999999999999998763
No 274
>PTZ00445 p36-lilke protein; Provisional
Probab=23.07 E-value=2.5e+02 Score=25.47 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=42.3
Q ss_pred chhhHHHHHHHHHHcCCCEEEEcccc-------CCCCCCcccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFS-------DGGYGALQQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~-------~~~~~~~~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..+..+...+.+++.|+++|=+ -++ .|+|. .+. .-.+-...-..+..++..+.++||.|+|..++
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~-D~DnTlI~~HsgG~~--~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIAS-DFDLTMITKHSGGYI--DPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEe-cchhhhhhhhccccc--CCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 4577888899999999999877 111 12231 111 10111123455677899999999999998765
No 275
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=23.06 E-value=1.9e+02 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=15.0
Q ss_pred CCCCCcEEEeCCeEEEC--CeEEEEEe
Q 016140 27 PAQAGFVQTRGTQFVLN--GSPFLFNG 51 (394)
Q Consensus 27 ~~~~~~v~~~g~~~~~~--G~~~~~~G 51 (394)
......|.++.+++..+ +....|.|
T Consensus 26 ~d~~~pI~I~AD~~~~~~~~~~~~~tG 52 (180)
T PRK10894 26 GDTDQPIHIDSDQQSLDMQGNVVTFTG 52 (180)
T ss_pred cccCCCEEEEeCceEeeccCCEEEEEe
Confidence 35566788887777632 34444555
No 276
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.78 E-value=2.5e+02 Score=26.33 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+.+..--+..|+.|++.+|--.|-+ +. +|-.|.--..+.|..+-..++++|+.|+-.+-+
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKP-RT-----SPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKP-RT-----SPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCC-CC-----CcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 567788888899999999999854432 11 121121222477778888999999999988753
No 277
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.73 E-value=2e+02 Score=26.47 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
.+.+++-+..++++|+.+|-+-.++. .+++.+-.-.....+.|...+++|.++++.+-+.+-
T Consensus 95 leiM~KaI~LA~dLGIRtIQLAGYDV----YYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 95 LEIMEKAIQLAQDLGIRTIQLAGYDV----YYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHHhCceeEeecccee----eeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeec
Confidence 35567788889999999999954432 134433222245668888999999999998888764
No 278
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.69 E-value=1.7e+02 Score=23.37 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhccCC
Q 016140 10 FLWAIALLLHLASAQTL 26 (394)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (394)
.++++++++++++|...
T Consensus 5 ~ll~~~~~~lL~gCs~~ 21 (109)
T PRK11372 5 KLLIICLPVLLTGCSAY 21 (109)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35566666667777753
No 279
>PRK09810 entericidin A; Provisional
Probab=22.48 E-value=83 Score=20.42 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHhhccCC
Q 016140 6 AKFSFLWAIALLLHLASAQTL 26 (394)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (394)
||-..++++++++++++|.+.
T Consensus 2 Mkk~~~l~~~~~~~L~aCNTv 22 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCNTA 22 (41)
T ss_pred hHHHHHHHHHHHHHHhhhhhc
Confidence 444444444445555666643
No 280
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.34 E-value=2.9e+02 Score=25.59 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecCC
Q 016140 111 QGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 111 ~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
..+..+++.|++.|+-+++++|+
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 57889999999999999999986
No 281
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.16 E-value=2.7e+02 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=36.0
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCCh--hhHHHHHHHHHHHHHcCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNE--PVFQGLDFVISEARKYGI 125 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~--~~l~~ld~~l~~a~~~Gi 125 (394)
+...+..-.+.+.+.|+-++|+. | +.+..+.|.||. ..++....+++|++++.=
T Consensus 45 ~nkvv~~la~~l~~~G~atlRfN-f-----RgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp 100 (210)
T COG2945 45 NNKVVQTLARALVKRGFATLRFN-F-----RGVGRSQGEFDNGIGELEDAAAALDWLQARHP 100 (210)
T ss_pred CCHHHHHHHHHHHhCCceEEeec-c-----cccccccCcccCCcchHHHHHHHHHHHHhhCC
Confidence 44677888889999999999993 2 223334555543 235666677777776643
No 282
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=22.15 E-value=1.1e+02 Score=24.66 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=12.9
Q ss_pred CCcEEEeCCeEEECCeEE
Q 016140 30 AGFVQTRGTQFVLNGSPF 47 (394)
Q Consensus 30 ~~~v~~~g~~~~~~G~~~ 47 (394)
.+-|+++..++...|...
T Consensus 27 ~g~i~v~~~~~~~~gd~L 44 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSL 44 (115)
T ss_pred CCcEEEEeeEEEEECCEE
Confidence 467888888888766643
No 283
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=22.13 E-value=3.8e+02 Score=26.18 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=38.5
Q ss_pred chhhHHHHHHHHHHcC----CCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 66 QRYKVSDVFRQAAAAG----LSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G----~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
+.+++++..+.+++.+ .-.|++-.+.+ +...+..|.+..-+.+..+.+..+++|+.|.+--
T Consensus 262 s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~-----~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~ 326 (347)
T PRK14453 262 SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNS-----TDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRT 326 (347)
T ss_pred CHHHHHHHHHHHhhccccCCcceEEEecCCC-----CCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 4567888888888763 34566533332 1111112333345778889999999999998864
No 284
>PRK10318 hypothetical protein; Provisional
Probab=21.91 E-value=72 Score=25.97 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=10.8
Q ss_pred CcEEEeCCeEEECCe
Q 016140 31 GFVQTRGTQFVLNGS 45 (394)
Q Consensus 31 ~~v~~~g~~~~~~G~ 45 (394)
++|.-++=.|+.||.
T Consensus 34 ~~~~~s~c~FiRNG~ 48 (121)
T PRK10318 34 GLAQKKDCTFVRNGD 48 (121)
T ss_pred HHHhcCCCEEEECCC
Confidence 345556778999987
No 285
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.88 E-value=1.3e+02 Score=28.41 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
..+|++.+.+.|++.|-+++... ... .+.+-+.--++.++.+..+++.|+++|++|.+.+-
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S-~~~-~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVS-DYH-IFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCC-HHH-HHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45788999999999988854211 000 01111222377899999999999999999998873
No 286
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.79 E-value=1.9e+02 Score=27.64 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCc-ccC--CCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGAL-QQS--PGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~-~~~--~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.+++.+.++.+++.|+.+==+++ .. .|... ... .-.+|++.+....++++..++.|++|++.++-
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~l-d~-~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHL-SS-GYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE-ec-cccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 57889999999999986544433 11 12211 000 12457777888999999999999999997754
No 287
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=21.76 E-value=3e+02 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCC
Q 016140 74 FRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNY 135 (394)
Q Consensus 74 ~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~ 135 (394)
.+...+.|.|.+=+-... -...+...+..|+++|.++.+++.+.|
T Consensus 73 ~~ma~~aGAd~~tV~g~A-----------------~~~TI~~~i~~A~~~~~~v~iDl~~~~ 117 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA-----------------DDATIKKAIKVAKEYGKEVQIDLIGVW 117 (217)
T ss_pred HHHHHHcCCCEEEEEecC-----------------CHHHHHHHHHHHHHcCCeEEEEeecCC
Confidence 344568899988873221 156778899999999999999997644
No 288
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.63 E-value=1.2e+02 Score=28.21 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHHHHcC----CCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 71 SDVFRQAAAAG----LSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 71 ~~d~~~lk~~G----~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
.++++.+.+.| ++.||++..... . ..+..-+.-.++.++.+...++.|++.|+.|.+..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSD-I-HLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 46777777778 999999642110 0 00111111124568888899999999999988654
No 289
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=21.55 E-value=1.9e+02 Score=30.05 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCccc--CCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ--SPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~--~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
-++.++.|+++|+|.|=+-+-+ + .+.+.. ..| ...+.+.+.++.++++|+.|.+++..
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS-~-~d~VL~~inRg----ht~~~v~~Ai~~lr~~G~~v~~~LM~ 264 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQT-I-YNDILERTKRG----HTVRDVVEATRLLRDAGLKVVYHIMP 264 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECcc-C-CHHHHHHhCCC----CCHHHHHHHHHHHHHcCCeEEEEeec
Confidence 4678999999999966653211 0 000000 111 12566678899999999999998854
No 290
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=21.43 E-value=7.7e+02 Score=24.09 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=60.3
Q ss_pred ccCCC-cEeEEEeccCCccCCC----CCchHHHHHHHHHHHHhhcc--CCCCEEEeccccc-cCCCCCCccCCCCCCCcc
Q 016140 190 YKDDP-TIMAWELINEARCQAD----YSGKTLNNWVQEMASYVKSI--DNKHLLEIGLEGF-YGDSIPDKKQFNPGYQVG 261 (394)
Q Consensus 190 ~~~~p-~I~~wel~NEp~~~~~----~~~~~~~~w~~~~~~~Ir~~--dp~~~V~~g~~g~-~~~~~~~~~~~n~~~~~g 261 (394)
|++.. ..+-|-.+=|++.... .+.+++.+....+...+|.. -+...++....+. -+.. .+.||
T Consensus 174 ~~s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~yspn~~~~~~~-----~yYPG---- 244 (355)
T COG4124 174 YKSNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMYSPNGGFKGLE-----AYYPG---- 244 (355)
T ss_pred hcCCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEEcCCCCcccch-----hcCCC----
Confidence 66321 4566888888876532 24567777788888888876 2333344322211 1110 12232
Q ss_pred ccchhhcCCCCccEEeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC
Q 016140 262 TDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKE 328 (394)
Q Consensus 262 ~~~~~~~~~~~~D~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~ 328 (394)
...+|++.+-.|...-....+... ...+.+.+.......+. .+||+.+.|.|....+
T Consensus 245 --------d~YVDiVGL~~ysd~~~n~~~~~~-~~tyaelt~~gy~~~~~-~nKPf~faElGp~~~~ 301 (355)
T COG4124 245 --------DNYVDIVGLDVYSDDPYNQGDTGR-DKTYAELTGPGYNRVAG-FNKPFGFAELGPEGGG 301 (355)
T ss_pred --------CceeeeeeeeccccCccccccccc-cccHHHHhcCcchhhhh-cCCceeeecccccCCC
Confidence 345777777777542211000000 00000111000112233 7999999999987653
No 291
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.39 E-value=2.8e+02 Score=24.10 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 73 VFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 73 d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.++.+++.|.+.+=++... .-+.++++++.|+++|+++++++.+
T Consensus 69 ~~~~~~~aGad~i~~h~~~-----------------~~~~~~~~i~~~~~~g~~~~v~~~~ 112 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA-----------------PLSTIKKAVKAAKKYGKEVQVDLIG 112 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC-----------------CHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 4688889999988774211 0145678899999999999988653
No 292
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.21 E-value=2e+02 Score=28.46 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHc--CCEEEEecC
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKY--GIRLILSLS 132 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~--Gi~vii~l~ 132 (394)
...++-++.++++|..+|-+|.-..+.-...+......-+...+.|..+.+.|+++ ||++.|...
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 33566778899999999988642211000000000001134557777888888886 588888764
No 293
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.03 E-value=2e+02 Score=28.04 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCE-EEEecC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIR-LILSLS 132 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~-vii~l~ 132 (394)
-++.++.|++.|+|.|-+-+-+ .. +.....-|+ ....+.+.+.++.+++.|+. |.+++.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS-~~-~~~l~~lgR--~~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQS-FR-DDKLLFLGR--QHSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred CHHHHHHHHHcCCCEEEEeccc-CC-hHHHHHhCC--CCCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 3567999999999966663211 00 000000021 12366777899999999995 678875
No 294
>PRK10426 alpha-glucosidase; Provisional
Probab=20.95 E-value=1e+03 Score=25.34 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCccc-----C---CCCCChhhHHHHHHHHHHHHHcCCEEEEecCCCCCCC
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQ-----S---PGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDF 138 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~-----~---~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~~~~~~ 138 (394)
.+++.+.++.+++.|+.+==+|+- .|..... . .-.+|++.+.....+++..++.|+++++-++-+-..
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld---dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~- 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ---DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS- 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe---cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC-
Confidence 456888999999999765545441 1321100 0 114577888889999999999999999887542211
Q ss_pred CChhhhHHHHHHcCCCCC--C-----------Cc--ccccCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEE-Eec
Q 016140 139 GGRPQYVNWARAAGASVN--S-----------DD--EFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAW-ELI 202 (394)
Q Consensus 139 gg~~~y~~w~~~~g~~~~--~-----------~~--~~~~~~~~~~~~~~~~~~lv~r~~~~~~~~~~~~p~I~~w-el~ 202 (394)
+.+.|..=. ..|.-+. . .. -=+++|++++.+.+.+++.... . .|-+| .=+
T Consensus 296 -~~~~y~e~~-~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~--------~----Gvdg~w~D~ 361 (635)
T PRK10426 296 -DGDLCEEAA-EKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIG--------L----GCSGWMADF 361 (635)
T ss_pred -CCHHHHHHH-HCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhh--------c----CCCEEeeeC
Confidence 122333211 1111110 0 01 1157899999888777543322 1 13333 447
Q ss_pred cCCccCCC-----CCch----H-HHHHHHHHHHHhhccCC-CCEEEeccccc
Q 016140 203 NEARCQAD-----YSGK----T-LNNWVQEMASYVKSIDN-KHLLEIGLEGF 243 (394)
Q Consensus 203 NEp~~~~~-----~~~~----~-~~~w~~~~~~~Ir~~dp-~~~V~~g~~g~ 243 (394)
||+..... .+.. . ...|.+.....+++..+ .+++...-+++
T Consensus 362 ~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~ 413 (635)
T PRK10426 362 GEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGY 413 (635)
T ss_pred CCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEcccc
Confidence 88533211 1111 1 23455666777777765 34544433333
No 295
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.91 E-value=1.6e+02 Score=27.51 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEE
Q 016140 68 YKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLIL 129 (394)
Q Consensus 68 ~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii 129 (394)
..+-.+++.+-++|.+.|=+.++. | +.....+++.+-++.+.|+++||-++.
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~-G---------s~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFI-G---------SEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEec-C---------CHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 345556777889999999986652 1 012356899999999999999999887
No 296
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=20.80 E-value=1.8e+02 Score=28.62 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCE-EEEecCC
Q 016140 70 VSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIR-LILSLSN 133 (394)
Q Consensus 70 ~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~-vii~l~~ 133 (394)
.++.++.+++.|+|.|-+-+-+ .. +.....-|+ ....+.+.+.++.+++.|+. |.+|+..
T Consensus 102 ~~~~l~~l~~~G~nrislGvQS-~~-~~~L~~l~R--~~~~~~~~~ai~~~~~~g~~~v~~Dli~ 162 (370)
T PRK06294 102 SESYIRALALTGINRISIGVQT-FD-DPLLKLLGR--THSSSKAIDAVQECSEHGFSNLSIDLIY 162 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcccc-CC-HHHHHHcCC--CCCHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 3577999999999966663211 00 000000011 11245666788999999996 8888753
No 297
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.80 E-value=2.9e+02 Score=25.61 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 66 QRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.+.+.+|++.++++|++-|=+-.. ...|..| .+.+.+++++|. ++.+ ++|-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L---------~~dg~vD---~~~~~~Li~~a~--~~~v--TFHR 122 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL---------DVDGHVD---MPRMRKIMAAAG--PLAV--TFHR 122 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE---------CCCCCcC---HHHHHHHHHHhc--CCce--EEec
Confidence 4577899999999999997766332 2356677 556677788874 5554 4553
No 298
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=20.79 E-value=1.6e+02 Score=31.37 Aligned_cols=130 Identities=21% Similarity=0.311 Sum_probs=52.4
Q ss_pred EEeccCCccCCCCCchHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCccCCCCCCCccccchhh-cCCCCccEEe
Q 016140 199 WELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEGFYGDSIPDKKQFNPGYQVGTDFISN-NMIKEIDFTT 277 (394)
Q Consensus 199 wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~~V~~g~~g~~~~~~~~~~~~n~~~~~g~~~~~~-~~~~~~D~~s 277 (394)
..+.||-... ..|++.+...+.+.+-+.+=.|+..+.+.. . +.++..+ .....+|+++
T Consensus 177 vg~~NEr~~~--------~~~ik~lr~~l~~~gy~~vkiva~D~~~~~-~------------~~~m~~D~~l~~avdvig 235 (669)
T PF02057_consen 177 VGIWNERGFD--------VNYIKWLRKALNSNGYNKVKIVAADNNWES-I------------SDDMLSDPELRNAVDVIG 235 (669)
T ss_dssp E-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STT-H------------HHHHHH-HHHHHH--EEE
T ss_pred echhhccCCC--------hhHHHHHHHHHhhccccceEEEEeCCCccc-h------------hhhhhcCHHHHhcccEec
Confidence 3568887642 467777777777766655444444333210 0 0011111 1234689999
Q ss_pred eecCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCcc
Q 016140 278 IHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNTIYMNIYNLARNGGAI 357 (394)
Q Consensus 278 ~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~kPv~v~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (394)
.| ||.... .+.++. .+|||+-+|=+...+. ..-..-+-|.+-.... ++ ..
T Consensus 236 ~H-Y~~~~~-------------------~~~a~~-~~K~lW~SE~~s~~~~----~~g~g~~ar~ln~~yv----~g-~m 285 (669)
T PF02057_consen 236 YH-YPGTYS-------------------SKNAKL-TGKPLWSSEDYSTFNY----NVGAGCWARILNRNYV----NG-RM 285 (669)
T ss_dssp EE-S-TT----------------------HHHHH-HT-EEEEEEEE-S-TT----HHHHHHHHHHHHHHHH----HH---
T ss_pred cc-cCCCCc-------------------HHHHHH-hCCCeEEcCCcccccC----cCchHHHHHHHHhhhh----cc-ce
Confidence 99 554310 012233 6999999996554332 1222233222221111 11 24
Q ss_pred ccccccccccc----------C----CCCCCCCcEE
Q 016140 358 GGGMVWQLMAE----------G----MQPYFDGYEI 379 (394)
Q Consensus 358 ~G~~~W~~~~~----------g----~~~w~~g~~~ 379 (394)
...+.|.+..- | .++|...|.+
T Consensus 286 T~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v 321 (669)
T PF02057_consen 286 TAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEV 321 (669)
T ss_dssp SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B-
T ss_pred EEEEeehhhhhhcCCCCCCCccceEecCCcccceEe
Confidence 57888888631 1 2788776665
No 299
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.73 E-value=4.4e+02 Score=21.03 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHcC-CCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCE
Q 016140 66 QRYKVSDVFRQAAAAG-LSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIR 126 (394)
Q Consensus 66 ~~~~~~~d~~~lk~~G-~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~ 126 (394)
+.+.+...++.+++.. -..|++ ..+. +.-++.+-++++.|++.|+.
T Consensus 68 ~~~~L~~~l~~~~~~~~~~~v~I--~aD~-------------~~~~~~vv~v~d~~~~aG~~ 114 (122)
T TIGR02803 68 ARETLGTALDALTEGDKDTTIFF--RADK-------------TVDYGDLMKVMNLLRQAGYL 114 (122)
T ss_pred CHHHHHHHHHHHHhcCCCceEEE--EcCC-------------CCCHHHHHHHHHHHHHcCCC
Confidence 3455666777665433 223444 2221 22378899999999999995
No 300
>PRK11443 lipoprotein; Provisional
Probab=20.72 E-value=84 Score=25.79 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhccCCCC
Q 016140 11 LWAIALLLHLASAQTLPA 28 (394)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (394)
+++++++++++.|++.+.
T Consensus 4 ~~~~~~~~lLsgCa~~~~ 21 (124)
T PRK11443 4 FIAPLLALLLSGCQIDPY 21 (124)
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 344444556667776553
No 301
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.60 E-value=2.6e+02 Score=26.05 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 69 KVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 69 ~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
-+++.++.+++.|++-|=++-. | ++..+.+++.|+++||..++-+
T Consensus 107 G~e~F~~~~~~aGvdgviipDL-----------P-------~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL-----------P-------YEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC-----------C-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677888888999888777311 1 3557788999999999988765
No 302
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.59 E-value=1.9e+02 Score=29.32 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEecC
Q 016140 71 SDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLS 132 (394)
Q Consensus 71 ~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l~ 132 (394)
++.++.|++.|++.|-+-+ ..+.-..+..- +. ....+.+.+.++.++++||.+..++.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-ES~s~~~L~~~-~K--~~~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-ESGDQQILKNI-KK--GLTVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHHHHHHh-cC--CCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 5668888888888666522 11110001000 00 11245677899999999999888764
No 303
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.36 E-value=3.7e+02 Score=26.25 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCC-------CEEEEccccC---CCCCCcc--cC-CCCCC-hh
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGL-------SVCRTWAFSD---GGYGALQ--QS-PGVYN-EP 108 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~-------N~vRi~~~~~---~~~~~~~--~~-~g~~~-~~ 108 (394)
+.+...+.|=+.-. +.+...+.-+.+|++|. .++|.+.+-+ .+|..+. |. +|.|+ ++
T Consensus 51 d~rllvI~GPCSIe---------d~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~ 121 (349)
T PRK09261 51 DDRLLVVVGPCSIH---------DPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIND 121 (349)
T ss_pred CCCeEEEEcCCcCC---------CHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHH
Confidence 34556677766211 44556666666666664 6899966432 2365553 32 36777 88
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCC
Q 016140 109 VFQGLDFVISEARKYGIRLILSLSNN 134 (394)
Q Consensus 109 ~l~~ld~~l~~a~~~Gi~vii~l~~~ 134 (394)
.|..+.+++-...+.||.+.-++.+.
T Consensus 122 GL~~~R~ll~~~~e~GlpvatE~ld~ 147 (349)
T PRK09261 122 GLRIARKLLLDINELGLPAATEFLDP 147 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 99999999888999999999888753
No 304
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.27 E-value=4e+02 Score=26.06 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=55.8
Q ss_pred CeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCC-------EEEEccccC---CCCCCcccC---CCCCC-hhh
Q 016140 44 GSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLS-------VCRTWAFSD---GGYGALQQS---PGVYN-EPV 109 (394)
Q Consensus 44 G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N-------~vRi~~~~~---~~~~~~~~~---~g~~~-~~~ 109 (394)
.+...+.|=+.- .+.+...+.-+.+|+++-. ++|.+.+-+ .+|..+... +|.++ ++.
T Consensus 53 ~rllvI~GPCSI---------~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~G 123 (353)
T PRK12755 53 DRLLVVVGPCSI---------HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEG 123 (353)
T ss_pred CCeEEEeCCCCC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHH
Confidence 455666676621 1456677777788887765 889865432 236555333 35666 788
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCC
Q 016140 110 FQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 110 l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
|..+.+++-...+.||.+.-++.+
T Consensus 124 L~~~R~ll~~~~e~Glp~atE~ld 147 (353)
T PRK12755 124 LRIARKLLLDLVELGLPLATEALD 147 (353)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecC
Confidence 999999988899999999988865
No 305
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.24 E-value=3.8e+02 Score=26.13 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCeEEEEEeeeccccccccCCCcchhhHHHHHHHHHHcCCC-------EEEEccccC---CCCCCcccCC---CCCC-hh
Q 016140 43 NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLS-------VCRTWAFSD---GGYGALQQSP---GVYN-EP 108 (394)
Q Consensus 43 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~d~~~lk~~G~N-------~vRi~~~~~---~~~~~~~~~~---g~~~-~~ 108 (394)
+.+...+.|=+.- .+.+...+.-+.+|++|.. ++|.+.+-+ .+|..+-..| |.|+ ++
T Consensus 46 d~rllvIvGPCSI---------hd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~ 116 (344)
T TIGR00034 46 DDRLLVVIGPCSI---------HDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINH 116 (344)
T ss_pred CCCeEEEecCCCC---------CCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHH
Confidence 3455566676621 1456677777888888876 999976543 2476665545 3554 67
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCC
Q 016140 109 VFQGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 109 ~l~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
.|..+.+++-...+.||-+.-.+.+
T Consensus 117 GL~~~R~ll~~i~~~GlPvatE~ld 141 (344)
T TIGR00034 117 GLRIARKLLLDLVNLGLPIAGEFLD 141 (344)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC
Confidence 8888888887789999999988865
No 306
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.18 E-value=3.7e+02 Score=30.96 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHHcCCEEEEec
Q 016140 67 RYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSL 131 (394)
Q Consensus 67 ~~~~~~d~~~lk~~G~N~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vii~l 131 (394)
..-++..++.+++.|++++|+|-.-+ .++.|...++++++.|..+...+
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~lN----------------~~~n~~~~~~~~~~~g~~~~~~i 672 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDSLN----------------WVENMRVGMDAVAEAGKVVEAAI 672 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCc----------------CHHHHHHHHHHHHHcCCEEEEEE
Confidence 35678888899999999999963211 15566666777777777665554
No 307
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.11 E-value=93 Score=26.57 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhccCCCCCC
Q 016140 10 FLWAIALLLHLASAQTLPAQA 30 (394)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (394)
++.+.++||+++.|+++|+..
T Consensus 7 r~~~~v~lL~LagCaTaP~~~ 27 (197)
T COG4764 7 RLVFAVVLLALAGCATAPSQV 27 (197)
T ss_pred HHHHHHHHHHHhhcccCCcCc
Confidence 344555677888888877543
No 308
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=20.00 E-value=2.9e+02 Score=25.70 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCEEEEecCC
Q 016140 111 QGLDFVISEARKYGIRLILSLSN 133 (394)
Q Consensus 111 ~~ld~~l~~a~~~Gi~vii~l~~ 133 (394)
+.|..+++.|++.||-+++.+|+
T Consensus 145 ~~l~~l~~~a~~lGle~lVEVh~ 167 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEVHN 167 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHcCCCeEEEECC
Confidence 45789999999999999999986
Done!