BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016142
         (394 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
 pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
 pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
           Magnesium Chelatase Based On Single-Particle Cryo-Em
           Reconstruction At 7.5 Ang
          Length = 350

 Score = 31.6 bits (70), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 248 RQLHPKHKVPSNAVWLCAAICIILG 272
           R+  PK + P+ A++ CAA+CI LG
Sbjct: 260 RERLPKVEAPNTALYDCAALCIALG 284


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,839,358
Number of Sequences: 62578
Number of extensions: 477352
Number of successful extensions: 920
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 2
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)