Query 016144
Match_columns 394
No_of_seqs 143 out of 1581
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1289 Amino acid transporter 100.0 2.6E-51 5.6E-56 387.6 29.2 373 1-390 148-524 (550)
2 TIGR00907 2A0304 amino acid pe 100.0 2.5E-46 5.4E-51 371.2 37.1 365 3-383 114-482 (482)
3 TIGR03428 ureacarb_perm permea 100.0 9.1E-40 2E-44 323.2 36.1 321 32-370 141-473 (475)
4 PRK15049 L-asparagine permease 100.0 1.9E-39 4.1E-44 321.6 33.3 321 34-378 143-471 (499)
5 TIGR03813 put_Glu_GABA_T putat 100.0 1E-38 2.2E-43 315.8 34.0 341 30-389 118-470 (474)
6 PRK10249 phenylalanine transpo 100.0 4.8E-37 1E-41 302.2 33.6 318 34-376 134-456 (458)
7 TIGR00908 2A0305 ethanolamine 100.0 1.3E-36 2.9E-41 298.5 33.8 312 36-381 122-435 (442)
8 PRK11357 frlA putative fructos 100.0 1.3E-36 2.7E-41 298.8 32.5 314 33-379 125-438 (445)
9 TIGR00913 2A0310 amino acid pe 100.0 1.7E-36 3.7E-41 300.7 33.0 301 40-353 123-440 (478)
10 TIGR00910 2A0307_GadC glutamat 100.0 2E-36 4.3E-41 300.4 33.3 336 26-379 114-464 (507)
11 TIGR00906 2A0303 cationic amin 100.0 3.3E-36 7.2E-41 301.2 33.2 306 37-381 163-556 (557)
12 PRK11049 D-alanine/D-serine/gl 100.0 3.8E-36 8.2E-41 296.8 32.8 289 37-344 136-435 (469)
13 KOG1287 Amino acid transporter 100.0 1.1E-36 2.3E-41 288.2 26.9 285 26-336 126-411 (479)
14 TIGR01773 GABAperm gamma-amino 100.0 5.8E-36 1.3E-40 294.7 33.3 320 34-378 125-451 (452)
15 PRK10238 aromatic amino acid t 100.0 1.1E-35 2.3E-40 292.5 33.5 290 36-344 127-422 (456)
16 PRK10655 potE putrescine trans 100.0 2.3E-35 5E-40 289.5 33.8 281 29-336 117-400 (438)
17 PRK11387 S-methylmethionine tr 100.0 1.9E-35 4E-40 292.2 33.3 315 37-378 131-458 (471)
18 PRK10197 gamma-aminobutyrate t 100.0 4.9E-35 1.1E-39 286.9 35.2 296 33-345 104-405 (446)
19 PRK10746 putative transport pr 100.0 3.9E-35 8.5E-40 288.5 34.3 288 35-341 124-421 (461)
20 PRK10836 lysine transporter; P 100.0 3.6E-35 7.8E-40 291.3 33.5 293 37-341 132-435 (489)
21 PRK10644 arginine:agmatin anti 100.0 6E-35 1.3E-39 286.9 34.1 281 30-339 120-403 (445)
22 PRK10580 proY putative proline 100.0 6.4E-35 1.4E-39 287.5 34.3 314 38-378 126-449 (457)
23 COG0833 LysP Amino acid transp 100.0 1.2E-35 2.5E-40 282.2 27.6 334 33-377 158-501 (541)
24 TIGR00911 2A0308 L-type amino 100.0 6.1E-35 1.3E-39 290.8 33.4 277 26-328 156-434 (501)
25 COG1113 AnsP Gamma-aminobutyra 100.0 8.3E-35 1.8E-39 271.0 25.7 326 28-379 120-453 (462)
26 TIGR00909 2A0306 amino acid tr 100.0 5E-34 1.1E-38 279.5 31.1 269 37-338 135-404 (429)
27 TIGR00905 2A0302 transporter, 100.0 9.6E-34 2.1E-38 280.2 33.0 287 31-340 125-412 (473)
28 PRK10435 cadB lysine/cadaverin 100.0 1.6E-33 3.5E-38 275.6 31.4 305 32-381 118-429 (435)
29 TIGR03810 arg_ornith_anti argi 100.0 5.5E-33 1.2E-37 274.4 33.6 285 33-341 121-408 (468)
30 PRK11021 putative transporter; 100.0 1E-32 2.2E-37 268.3 30.1 248 31-306 111-358 (410)
31 PRK15238 inner membrane transp 100.0 3.6E-32 7.8E-37 270.4 30.1 332 36-378 136-490 (496)
32 PF13520 AA_permease_2: Amino 100.0 8.1E-32 1.8E-36 263.8 28.3 306 26-357 109-419 (426)
33 TIGR00930 2a30 K-Cl cotranspor 100.0 1.8E-30 3.9E-35 271.0 32.7 294 35-340 203-516 (953)
34 COG0531 PotE Amino acid transp 100.0 2.4E-30 5.2E-35 256.3 30.3 284 33-336 132-418 (466)
35 KOG1286 Amino acid transporter 100.0 6.1E-30 1.3E-34 251.4 24.5 323 41-379 161-500 (554)
36 PF00324 AA_permease: Amino ac 100.0 1.5E-31 3.2E-36 265.3 13.1 296 37-344 119-431 (478)
37 KOG1288 Amino acid transporter 99.8 8.1E-17 1.8E-21 155.2 23.4 306 3-332 161-496 (945)
38 TIGR00837 araaP aromatic amino 99.7 6.3E-16 1.4E-20 149.2 23.8 265 33-330 112-377 (381)
39 KOG2082 K+/Cl- cotransporter K 99.7 8E-16 1.7E-20 149.5 22.3 212 112-341 412-625 (1075)
40 TIGR00796 livcs branched-chain 99.6 5.1E-13 1.1E-17 126.6 23.5 245 33-320 109-365 (378)
41 KOG2083 Na+/K+ symporter [Inor 99.3 8.6E-11 1.9E-15 113.1 15.4 261 31-303 144-408 (643)
42 PF03222 Trp_Tyr_perm: Tryptop 99.1 1.7E-07 3.6E-12 90.4 27.8 183 36-234 121-303 (394)
43 TIGR00912 2A0309 spore germina 99.1 7.5E-08 1.6E-12 92.2 23.8 179 33-233 113-293 (359)
44 TIGR00814 stp serine transport 98.9 7.7E-07 1.7E-11 85.7 22.3 184 35-237 122-312 (397)
45 PRK15132 tyrosine transporter 98.8 1.4E-05 3.1E-10 76.9 27.6 253 38-326 123-376 (403)
46 PRK10483 tryptophan permease; 98.7 1.3E-05 2.8E-10 77.1 26.5 185 37-236 129-313 (414)
47 PRK09664 tryptophan permease T 98.6 3.6E-05 7.9E-10 74.0 26.4 184 38-234 129-312 (415)
48 COG0814 SdaC Amino acid permea 98.4 0.00042 9E-09 67.5 27.9 129 33-171 126-255 (415)
49 PRK13629 threonine/serine tran 98.3 0.00041 8.9E-09 67.0 24.4 255 34-303 137-408 (443)
50 PF05525 Branch_AA_trans: Bran 98.1 0.00077 1.7E-08 65.1 20.7 232 30-300 113-348 (427)
51 COG1114 BrnQ Branched-chain am 98.1 0.007 1.5E-07 57.3 26.2 236 31-301 116-351 (431)
52 PHA02764 hypothetical protein; 97.9 0.0012 2.7E-08 59.8 16.6 104 111-258 182-285 (399)
53 KOG1303 Amino acid transporter 97.6 0.015 3.3E-07 56.6 21.6 143 51-222 179-321 (437)
54 PRK11375 allantoin permease; P 97.5 0.11 2.5E-06 51.7 29.3 116 36-158 159-275 (484)
55 PF03845 Spore_permease: Spore 97.5 0.016 3.4E-07 54.6 19.7 181 30-233 108-289 (320)
56 KOG1304 Amino acid transporter 97.5 0.071 1.5E-06 51.6 23.6 172 30-234 174-348 (449)
57 PRK15433 branched-chain amino 97.3 0.2 4.3E-06 48.7 24.5 186 33-234 120-308 (439)
58 PLN03074 auxin influx permease 96.9 0.17 3.6E-06 50.3 20.3 59 110-169 233-291 (473)
59 COG3949 Uncharacterized membra 96.8 0.21 4.6E-06 46.1 18.3 88 124-227 193-280 (349)
60 COG1953 FUI1 Cytosine/uracil/t 96.8 0.63 1.4E-05 45.6 25.5 152 4-167 136-297 (497)
61 COG1457 CodB Purine-cytosine p 96.6 0.75 1.6E-05 44.8 28.0 97 32-140 127-224 (442)
62 PTZ00206 amino acid transporte 96.6 0.48 1E-05 47.1 21.1 59 111-169 257-316 (467)
63 PF01490 Aa_trans: Transmembra 96.4 0.00044 9.5E-09 67.4 -1.9 61 109-169 191-253 (409)
64 TIGR02119 panF sodium/pantothe 96.4 1.2 2.7E-05 44.2 24.5 90 130-231 256-345 (471)
65 PF02705 K_trans: K+ potassium 96.2 1.6 3.4E-05 43.6 22.4 226 35-294 132-364 (534)
66 COG0733 Na+-dependent transpor 95.9 1.9 4E-05 41.9 22.1 188 32-238 141-333 (439)
67 PF01235 Na_Ala_symp: Sodium:a 95.7 1.3 2.7E-05 43.0 17.8 191 34-236 138-338 (416)
68 PLN00149 potassium transporter 95.4 2.1 4.5E-05 44.6 18.9 231 33-294 196-434 (779)
69 COG1914 MntH Mn2+ and Fe2+ tra 95.3 3.1 6.7E-05 40.4 22.6 28 56-83 145-172 (416)
70 TIGR00794 kup potassium uptake 95.3 2.3 4.9E-05 43.8 18.8 227 34-294 167-401 (688)
71 PF01566 Nramp: Natural resist 95.3 2.9 6.3E-05 40.0 22.7 43 194-236 243-285 (358)
72 PLN00150 potassium ion transpo 95.2 1.3 2.7E-05 46.0 16.8 226 35-294 214-447 (779)
73 PRK09442 panF sodium/panthothe 95.2 3.8 8.3E-05 40.9 28.8 85 135-231 262-346 (483)
74 PLN00148 potassium transporter 95.1 1.4 3.1E-05 45.7 16.9 224 35-292 197-428 (785)
75 PLN00151 potassium transporter 95.0 1.8 3.9E-05 45.1 17.3 227 34-294 273-507 (852)
76 PF00209 SNF: Sodium:neurotran 94.5 0.7 1.5E-05 46.7 13.1 112 42-160 187-299 (523)
77 PF13906 AA_permease_C: C-term 94.2 0.19 4.1E-06 33.0 5.5 50 317-379 1-50 (51)
78 TIGR00813 sss transporter, SSS 94.2 5.8 0.00013 38.6 19.0 87 136-232 229-322 (407)
79 PRK10745 trkD potassium transp 94.1 3.3 7.2E-05 42.0 16.4 226 35-294 143-375 (622)
80 KOG1305 Amino acid transporter 93.7 7.4 0.00016 37.9 22.3 59 111-169 195-254 (411)
81 COG4858 Uncharacterized membra 93.3 1.6 3.4E-05 36.7 10.5 91 260-353 101-195 (226)
82 PRK00701 manganese transport p 93.0 9.9 0.00022 37.4 20.6 27 310-336 400-426 (439)
83 PF00474 SSF: Sodium:solute sy 93.0 1.5 3.3E-05 42.6 12.1 33 201-233 289-321 (406)
84 TIGR02711 symport_actP cation/ 91.7 17 0.00036 37.0 23.6 24 137-161 288-311 (549)
85 PF06570 DUF1129: Protein of u 90.8 2.3 4.9E-05 37.2 9.5 15 367-381 190-204 (206)
86 TIGR00800 ncs1 NCS1 nucleoside 90.4 19 0.00042 35.5 24.2 50 110-160 207-257 (442)
87 PRK12488 acetate permease; Pro 89.6 26 0.00056 35.7 26.9 38 121-159 272-309 (549)
88 TIGR02121 Na_Pro_sym sodium/pr 89.3 25 0.00055 35.1 25.7 32 201-232 315-346 (487)
89 PRK11017 codB cytosine permeas 88.8 24 0.00053 34.3 27.6 100 41-153 126-226 (404)
90 PF02028 BCCT: BCCT family tra 88.4 29 0.00063 34.6 24.3 68 4-78 195-263 (485)
91 PRK10484 putative transporter; 86.2 40 0.00088 34.0 30.3 31 202-232 325-355 (523)
92 PRK09950 putative transporter; 86.0 40 0.00087 33.8 24.8 89 205-302 400-490 (506)
93 TIGR00835 agcS amino acid carr 85.6 38 0.00082 33.2 21.1 187 35-235 166-364 (425)
94 PRK15238 inner membrane transp 85.3 5.2 0.00011 40.1 9.3 53 219-273 323-377 (496)
95 PRK09395 actP acetate permease 84.7 49 0.0011 33.7 24.3 22 136-158 289-310 (551)
96 KOG3659 Sodium-neurotransmitte 83.5 55 0.0012 33.2 17.8 136 27-169 246-382 (629)
97 COG3158 Kup K+ transporter [In 82.7 57 0.0012 32.9 14.8 27 35-61 148-174 (627)
98 PF02133 Transp_cyt_pur: Perme 82.0 41 0.00088 33.0 14.0 33 39-71 141-173 (440)
99 PRK15419 proline:sodium sympor 81.3 63 0.0014 32.4 27.1 31 201-231 322-352 (502)
100 COG4147 DhlC Predicted symport 72.0 1.1E+02 0.0023 30.4 22.3 66 202-274 341-410 (529)
101 PRK03356 L-carnitine/gamma-but 71.4 1.2E+02 0.0026 30.6 24.7 90 205-302 403-492 (504)
102 PRK09928 choline transport pro 70.2 1.4E+02 0.0031 31.1 22.3 90 205-302 407-496 (679)
103 KOG3660 Sodium-neurotransmitte 68.6 1.1E+02 0.0024 31.7 13.0 55 28-82 209-263 (629)
104 COG4145 PanF Na+/panthothenate 65.5 1.3E+02 0.0029 28.9 14.0 39 124-163 249-287 (473)
105 PRK03557 zinc transporter ZitB 63.5 1.3E+02 0.0028 28.1 12.4 41 295-335 59-99 (312)
106 COG1115 AlsT Na+/alanine sympo 58.8 1.9E+02 0.0041 28.5 15.2 189 34-236 182-382 (452)
107 COG0591 PutP Na+/proline sympo 58.6 2E+02 0.0044 28.8 27.3 33 202-234 323-355 (493)
108 PRK06638 NADH:ubiquinone oxido 53.0 1.5E+02 0.0033 25.6 11.3 10 255-264 26-35 (198)
109 PF01102 Glycophorin_A: Glycop 50.5 12 0.00026 29.5 2.1 20 362-381 76-95 (122)
110 PHA02680 ORF090 IMV phosphoryl 50.4 86 0.0019 23.0 6.1 33 361-393 55-87 (91)
111 PF05297 Herpes_LMP1: Herpesvi 49.8 5.4 0.00012 36.0 0.0 24 249-272 13-36 (381)
112 PRK09509 fieF ferrous iron eff 45.8 2.3E+02 0.0049 26.2 10.2 38 294-331 50-87 (299)
113 TIGR00842 bcct choline/carniti 44.8 3.3E+02 0.0071 27.1 24.5 98 190-303 343-445 (453)
114 TIGR03648 Na_symport_lg probab 43.7 3.7E+02 0.008 27.4 26.6 29 203-231 365-393 (552)
115 COG0053 MMT1 Predicted Co/Zn/C 42.4 1.1E+02 0.0025 28.4 7.5 44 298-341 56-99 (304)
116 COG0598 CorA Mg2+ and Co2+ tra 41.2 71 0.0015 30.0 6.1 57 322-378 261-320 (322)
117 TIGR01167 LPXTG_anchor LPXTG-m 40.9 50 0.0011 19.1 3.3 7 370-376 24-30 (34)
118 PRK09546 zntB zinc transporter 39.2 75 0.0016 29.8 5.9 23 324-346 265-287 (324)
119 PF11998 DUF3493: Protein of u 39.0 75 0.0016 22.7 4.4 35 130-164 7-41 (75)
120 PRK11056 hypothetical protein; 38.3 1.9E+02 0.0042 22.6 8.4 9 345-353 85-93 (120)
121 PF11174 DUF2970: Protein of u 37.2 1.1E+02 0.0025 20.4 4.8 44 114-160 3-46 (56)
122 TIGR00383 corA magnesium Mg(2+ 37.1 68 0.0015 29.9 5.3 26 322-347 257-282 (318)
123 PF04235 DUF418: Protein of un 36.1 2.4E+02 0.0053 23.1 8.1 18 369-386 137-154 (163)
124 PRK11085 magnesium/nickel/coba 36.1 1E+02 0.0022 28.9 6.1 27 322-348 255-281 (316)
125 TIGR02358 thia_cytX probable h 33.5 4.5E+02 0.0097 25.3 31.0 103 45-163 122-225 (386)
126 PRK00968 tetrahydromethanopter 31.7 57 0.0012 28.3 3.3 30 134-163 205-235 (240)
127 PF05767 Pox_A14: Poxvirus vir 31.5 2.2E+02 0.0047 21.1 5.9 21 358-378 51-71 (92)
128 PF10754 DUF2569: Protein of u 31.3 2.7E+02 0.0059 22.7 7.3 22 359-380 123-144 (149)
129 PRK10921 twin-arginine protein 30.9 1.4E+02 0.003 27.1 6.0 10 297-306 169-178 (258)
130 PRK06433 NADH dehydrogenase su 30.7 2.2E+02 0.0048 21.0 6.3 18 255-272 26-43 (88)
131 PF08693 SKG6: Transmembrane a 30.6 39 0.00084 20.9 1.6 16 363-378 24-39 (40)
132 KOG2466 Uridine permease/thiam 27.8 6.4E+02 0.014 25.4 13.8 222 3-249 150-381 (572)
133 PLN02351 cytochromes b561 fami 26.2 4.8E+02 0.01 23.4 8.5 22 357-378 202-223 (242)
134 PF01545 Cation_efflux: Cation 25.3 2.9E+02 0.0064 24.9 7.3 39 303-341 47-85 (284)
135 PHA02898 virion envelope prote 25.1 2.7E+02 0.0058 20.5 5.3 21 358-378 51-71 (92)
136 TIGR01297 CDF cation diffusion 24.9 1.9E+02 0.0041 26.0 5.9 34 301-334 36-69 (268)
137 PF05545 FixQ: Cbb3-type cytoc 24.0 85 0.0018 20.1 2.5 8 371-378 26-33 (49)
138 COG4060 MtrD Tetrahydromethano 23.6 1E+02 0.0023 25.8 3.4 30 134-163 195-225 (230)
139 COG3333 Uncharacterized protei 23.4 7.2E+02 0.016 24.7 9.4 43 40-82 364-406 (504)
140 PHA03049 IMV membrane protein; 23.2 1.3E+02 0.0029 20.7 3.3 19 362-380 10-28 (68)
141 PHA03048 IMV membrane protein; 23.1 3E+02 0.0066 20.3 5.2 20 359-378 51-70 (93)
142 PF09930 DUF2162: Predicted tr 22.2 3.4E+02 0.0074 24.0 6.6 14 279-292 57-70 (224)
143 PF06609 TRI12: Fungal trichot 22.0 9E+02 0.019 25.1 14.7 20 357-376 275-294 (599)
144 PRK05482 potassium-transportin 21.9 8.7E+02 0.019 24.9 13.8 59 211-273 482-540 (559)
145 COG4025 Predicted membrane pro 20.8 3.2E+02 0.007 24.3 5.9 16 227-242 55-70 (284)
No 1
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-51 Score=387.57 Aligned_cols=373 Identities=34% Similarity=0.630 Sum_probs=346.9
Q ss_pred CcchhhhHHHHHHHHHHHhccCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016144 1 MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 80 (394)
Q Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~ 80 (394)
.||++|..++++++++.+.| |+|+.+.|+.+.+..++..+..++|+.+.|...+++.+...+.++.+++..|...
T Consensus 148 ~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~ll 222 (550)
T KOG1289|consen 148 VASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLL 222 (550)
T ss_pred chhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999998 9999999999999999999999999999999999999999999999999988887
Q ss_pred hccccc---ccccccccceeecCCCCCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHH
Q 016144 81 LVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIF 157 (394)
Q Consensus 81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~ 157 (394)
+..+++ ++.+..|+++ + |.++|++.|++++.++....|.+.|+|+++|++||+|||+|+.||||+.++.+..++
T Consensus 223 a~~~~k~gFns~~~iF~~f-~--N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~ 299 (550)
T KOG1289|consen 223 AASSKKTGFNSGSFIFGKF-N--NYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFIL 299 (550)
T ss_pred hccCCCCCCCCCceeeecc-c--ccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHH
Confidence 765543 4566778888 7 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-ChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016144 158 GWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 236 (394)
Q Consensus 158 y~l~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 236 (394)
.....+.+..++| +.+.+.+++. ++|+++.+.+.+|+. +..++..+.+++.+.+..+.+.+.||+.|+.+
T Consensus 300 gw~~~I~i~~~i~~D~~~v~ns~~----g~p~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afa 370 (550)
T KOG1289|consen 300 GWIIIIGIAYTIPDDLDAVLNSSL----GQPIVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRLVYAFA 370 (550)
T ss_pred HHHHHHHHHHhccchHHHHhcCCC----CChHHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 9999999999997 5667777666 799999999998554 45777888889999999999999999999999
Q ss_pred cCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 016144 237 RDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGP 316 (394)
Q Consensus 237 ~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (394)
|||.+|+|++++|+||++++|.+|+++..++++++.++.+++..+++.+++.+.+..+++|.++..+.+...|++.++.|
T Consensus 371 RDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp 450 (550)
T KOG1289|consen 371 RDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGP 450 (550)
T ss_pred ccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888777889999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhccceeeeCCccccCCC
Q 016144 317 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE 390 (394)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (394)
|+++|++.+.+++++.|.+++.+++++|...|++.++|||+.++.+..+++..++|+..+||++++|+...+|+
T Consensus 451 ~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~ 524 (550)
T KOG1289|consen 451 FNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE 524 (550)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766555
No 2
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2.5e-46 Score=371.22 Aligned_cols=365 Identities=32% Similarity=0.624 Sum_probs=297.9
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCC--cccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016144 3 TQAYAGSQTLQSIILLCTGTNKDGG--YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP 80 (394)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~ 80 (394)
+.++..+.++.++..+.+ ++ +.+++|+...+..+++++.+++|++|+|..++++++..+++++.++++++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l 188 (482)
T TIGR00907 114 STDLSVAQLILGIVSLTT-----PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLL 188 (482)
T ss_pred HHHHHHHHHHHHHHHhcC-----CCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555566666555443 43 66778888888899999999999999999999999999999888876665554
Q ss_pred hcccc-cccccccccceeecCCCC-CCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHH
Q 016144 81 LVALT-TQSASYVFTHFEMSPEAT-GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFG 158 (394)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y 158 (394)
...++ .++.++.++++ . ++. +|.+++.+++.++....|+|.|+|.+++++||+||||||+|||+..++.+..++|
T Consensus 189 ~~~~~~~~~~~~~~~~~-~--~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~ 265 (482)
T TIGR00907 189 ACKSPKFNDGKFVFTNF-N--NSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTG 265 (482)
T ss_pred ccCCCCCCChhhhheee-e--CCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHH
Confidence 43221 22333345555 3 332 5655566788888889999999999999999999999999999999999888776
Q ss_pred HHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC
Q 016144 159 WALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 238 (394)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 238 (394)
.+..+......++.+++.+++. ++|..+.+.+.+ |.+++..++....+++.+++.++.+.+.||++++||||
T Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 266 FCFNIVLFFSMGDIDSLISSTT----GQPIAQIFYNAL----GNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred HHHHHHHHhcCCCHHHHhcCCC----CChHHHHHHHHh----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6655555555545666655544 468878777665 44456777888888999999999999999999999999
Q ss_pred CCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcc
Q 016144 239 KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFY 318 (394)
Q Consensus 239 ~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
|.+|++++|+|+|||+|+|++|++++.+++.++.+...++.+.++.+.+.++...++.|.++..+.+++||+++++||||
T Consensus 338 g~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~~~~~~~f~ 417 (482)
T TIGR00907 338 GGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPFW 417 (482)
T ss_pred CCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 99999999999999889999999999999988776666667899999999999999999998887766655556788999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhccceeeeCC
Q 016144 319 LGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP 383 (394)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
.+++++.++.++++++.+..+..++|...|.+.++++|..++++.+++++.++|+.++||++++|
T Consensus 418 lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp 482 (482)
T TIGR00907 418 LGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482 (482)
T ss_pred CCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence 98789999999999999999999999988888999999999999999999999999999999886
No 3
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=9.1e-40 Score=323.24 Aligned_cols=321 Identities=20% Similarity=0.280 Sum_probs=253.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCC-CchH
Q 016144 32 KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGIS-SKPY 110 (394)
Q Consensus 32 ~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (394)
.|+..+++.+++++.+.+|++|+|..+++|++...++++.++++++.++...+ ++....+++. . .++. +...
T Consensus 141 ~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~-~----~~~~~~~~~ 213 (475)
T TIGR03428 141 AANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTS-V----TGASPGYYG 213 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeecC-C----CCCCccHHH
Confidence 46778888889999999999999999999999999999888777766554332 2222222221 1 1111 1134
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..+....+|+|.|+|.+++++||+||||||+|||+..++.+++++|.+..+......++.++...+++ +.| .
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p--~ 287 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAE----GLP--Y 287 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCC----chH--H
Confidence 6777888899999999999999999999999999999999999999888888877777654443322222 233 3
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.+.+.. |.+++ ..+....+++.+++.++.+.+.+|+++++||||.+|++++|+|+|||+++|++|+++..+++.+
T Consensus 288 ~~~~~~----g~~~~-~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~ 362 (475)
T TIGR03428 288 VLSAVL----DSPWG-TVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIG 362 (475)
T ss_pred HHHHHh----CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHH
Confidence 344444 44444 3445666788999999999999999999999999997779999999999999999999999998
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c------cCCcCCCcccccchhHHHHHHHHHHHHHHHHhcc
Q 016144 271 LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA-E------QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLL 343 (394)
Q Consensus 271 ~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (394)
+.++..+++..++.+.+++++..+++|.++....+.+| | ++.+++||+++|+++.+++++++++++..+..++
T Consensus 363 ~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~ 442 (475)
T TIGR03428 363 ILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSW 442 (475)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHC
Confidence 88777677789999999999999999998755443332 1 2247789999999999999999999999999999
Q ss_pred CCCCCCCC----CCccchHHHHHHHHHHHHH
Q 016144 344 PTFYPISW----DTFNYAPVALGVGLGLIML 370 (394)
Q Consensus 344 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 370 (394)
|...+.+. ++|||+.++++.++++.+.
T Consensus 443 P~~~~~~~~~~~~~mny~~~~~~~~~~~~~~ 473 (475)
T TIGR03428 443 PRPEVYDPSGDGPIMLWSAPIFVGAVLLLGI 473 (475)
T ss_pred CCCCCCCCCCcccccchHHHHHHHHHHHHHh
Confidence 98877766 6999998888777776553
No 4
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.9e-39 Score=321.58 Aligned_cols=321 Identities=13% Similarity=0.136 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---ccccccceeecCCCCCCCCchH
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS---ASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
+.+.++++++++.+.+|++|+|.++++|.+++.+|++.++.+++.++.....+++ ....+.++ . +++..++++..
T Consensus 143 ~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~-~-~~~~~~p~g~~ 220 (499)
T PRK15049 143 PQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLI-T-DNGGFFPHGLL 220 (499)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccc-c-CCCCcccccHH
Confidence 3345677788899999999999999999999999999988887766542211111 11122222 1 12233443344
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
+++.++...+|+|.|+|.+++++||+|||+||+|||+..++..+.++|++...+....+ +++++... ..|..+
T Consensus 221 ~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~-p~~~~~~~------~sP~~~ 293 (499)
T PRK15049 221 PALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLL-PWSAYQAG------QSPFVT 293 (499)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-chhccCcC------CCHHHH
Confidence 66777788999999999999999999999999999999999999999999999988888 67666433 357766
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
++... |.++...++.+..+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|++|++++.+++++
T Consensus 294 ~~~~~-----g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~-k~~~P~~Ail~~~~i~~l 365 (499)
T PRK15049 294 FFSKL-----GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMS-RQHVPYAGILATLVVYVV 365 (499)
T ss_pred HHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhC-CCCCCHHHHHHHHHHHHH
Confidence 65332 666788999999999999999999999999999999999999 9999999 889999999999888665
Q ss_pred Hhh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-C---CcCCCcccccchhHHHHHHHHHHHHHHHHhccCC
Q 016144 271 LGL-PILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-K---FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPT 345 (394)
Q Consensus 271 ~~l-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (394)
..+ ....+.+.++.+.++++...++.|.+++.+.+..||+ + ..++|||.| .++..++++++++++..+...+.
T Consensus 366 ~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~-~~p~~~~~~l~~~~~~~~~~~~~- 443 (499)
T PRK15049 366 GVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP-GAPFTSWLTLLFLLSVLVLMAFD- 443 (499)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-CccHHHHHHHHHHHHHHHHHHHc-
Confidence 433 2334568899999999999999999988866544432 2 235799999 68999999998888877776652
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 346 FYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
. +++++..+....+.++..+.|+.++||
T Consensus 444 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (499)
T PRK15049 444 -Y----PNGTYTIAALPIIGILLVIGWFGVRKR 471 (499)
T ss_pred -C----cchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 155777777777777777777664443
No 5
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1e-38 Score=315.81 Aligned_cols=341 Identities=15% Similarity=0.135 Sum_probs=257.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHhhhhhcccccccccc--cccceeecCCCCCCC
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWW-QVAGGLVIIIMLPLVALTTQSASY--VFTHFEMSPEATGIS 106 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~-~i~~l~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 106 (394)
.++|....+.++++++.+.+|++|+|..+++|++...+ +++.++++++.++.....+++.+. .++++ . |+..++.
T Consensus 118 ~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~-~-p~~~~~~ 195 (474)
T TIGR03813 118 GNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDA-F-PDFTNFD 195 (474)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHh-C-CCccccc
Confidence 45666667788888889999999999999999987554 455555555554432111111111 11222 1 0112222
Q ss_pred CchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCC
Q 016144 107 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 186 (394)
Q Consensus 107 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (394)
++..+ ...+|+|.|+|.++..+||+||||||+|||+..+..+++++|++..++..... ++++...+ +
T Consensus 196 ----~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~-------~ 262 (474)
T TIGR03813 196 ----NVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFII-PREDISLT-------Q 262 (474)
T ss_pred ----cHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc-CHhhcccc-------c
Confidence 23222 24579999999999999999999999999999999999999999999998888 55554322 2
Q ss_pred cHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHH
Q 016144 187 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 266 (394)
Q Consensus 187 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ 266 (394)
+..+.+.+.++.. |.++...++.+...++.+++.++.+.+.+|++++++|||.+| ++|+|+| |+|+|+++++++.+
T Consensus 263 ~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~-k~~~P~~a~~~~~~ 338 (474)
T TIGR03813 263 SLLVAFDNAFHWA-GLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTN-KNGMPIHIMFVQGI 338 (474)
T ss_pred cHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccC-CCCCcHHHHHHHHH
Confidence 2333344444333 566677788888888999999999999999999999999999 9999999 78999999999998
Q ss_pred HHHHHhhhcc--cc-HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcccc--cc-hhHHHHHHHHHHHHHHH
Q 016144 267 ICIILGLPIL--KV-NVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLG--KA-SRPICLIAFLWICYTCS 339 (394)
Q Consensus 267 ls~i~~l~~~--~~-~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 339 (394)
++.++.++.. .+ .+.++.+.++++....+.|.+++.+. ++|+|+++.+||||.| ++ .+.+++++.+++++..+
T Consensus 339 ~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~ 418 (474)
T TIGR03813 339 AVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFV 418 (474)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHh
Confidence 8765544322 22 46789999999999999999887755 4454667788999995 33 45799999999999999
Q ss_pred HhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhcccee--eeCCccccCC
Q 016144 340 VFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW--FTGPVRNIDN 389 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 389 (394)
..++|+..+.+.++++|..++++..+++..++|+.|+||+ +++|.++.++
T Consensus 419 ~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (474)
T TIGR03813 419 LSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYARRKPHWRDPNSNFEP 470 (474)
T ss_pred eeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCccccccC
Confidence 9999999999999999999998888888888888877665 7777554443
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=4.8e-37 Score=302.16 Aligned_cols=318 Identities=14% Similarity=0.078 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccccccccccceeecCCCCCCCCchHHH
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL-TTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
+...+.++++++.+.+|++|+|..+++|.+++.+|++.++.+++.++.... .++.....+.+... ++..++++..++
T Consensus 134 ~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~ 211 (458)
T PRK10249 134 PTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWR--YGGFFATGWNGL 211 (458)
T ss_pred cHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccC--CCCCCCCcHHHH
Confidence 344567788889999999999999999999999999888887776554211 11111122222101 111122233478
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 192 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (394)
..++...+|+|.|+|.+++.+||+||||||+|||++.+...+.++|++......... ++++...+ ++|..+.+
T Consensus 212 ~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~p~~~~~ 284 (458)
T PRK10249 212 ILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALY-PWVEVKSN------SSPFVMIF 284 (458)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheec-cccccCcc------CCcHHHHH
Confidence 899999999999999999999999999999999999999999999999888888777 55554322 35777765
Q ss_pred HHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHh
Q 016144 193 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG 272 (394)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~ 272 (394)
.+. +.+++..++.+..+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|++|++++.+++.+..
T Consensus 285 ~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~~P~~All~~~~i~~l~~ 356 (458)
T PRK10249 285 HNL-----DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVS-RRGVPINSLMLSGAITSLVV 356 (458)
T ss_pred HHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhC-CCCCCHHHHHHHHHHHHHHH
Confidence 544 455578888888999999999999999999999999999999 9999999 77999999999999998876
Q ss_pred hhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCcCCCcccccchhHHHHHHHHHHHHHHHHhccCCCCC
Q 016144 273 LPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMA---EQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 348 (394)
Q Consensus 273 l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (394)
+.. ..+++.++.+.++++...++.|.+++.+.+..| +++..++|||.+ ++|..++++++++.+..+...
T Consensus 357 l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~-~~p~~~~~~l~~~~~~~v~~~------ 429 (458)
T PRK10249 357 LINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL-LYPFGNYLCIAFLGMILLLMC------ 429 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC-CccHHHHHHHHHHHHHHHHHH------
Confidence 553 455678999999999999999999877554433 344457899987 899999999988888776653
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhcc
Q 016144 349 ISWDTFNYAPVALGVGLGLIMLWWLLDA 376 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (394)
..++++|..+..+.+.+...+.|..++
T Consensus 430 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (458)
T PRK10249 430 -TMDDMRLSAILLPVWIVFLFVAFKTLR 456 (458)
T ss_pred -HcchHHHHHHHHHHHHHHHHHHHHhee
Confidence 245678877777777776666666543
No 7
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.3e-36 Score=298.54 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch-HHHHH
Q 016144 36 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP-YAVIL 114 (394)
Q Consensus 36 ~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 114 (394)
+.++++++++.+.+|++|+|..+++|.+++.++++.++++++... .+.++.+....++ . +..++.+.+ .+++.
T Consensus 122 ~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 195 (442)
T TIGR00908 122 WLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMV---PHFDSANLFNGPQ-T--GASSFLPGAYVGVFA 195 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---ccCCHHHhccCCc-c--CCCCCCCccHHHHHH
Confidence 356667778889999999999999999999998887665544322 1112222211212 2 223343333 37888
Q ss_pred HHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHH
Q 016144 115 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD 194 (394)
Q Consensus 115 ~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (394)
++..++|+|.|+|.+++++||+||||||+|||++.+..++.++|+.......... +++++.+. ..|..+.+.+
T Consensus 196 ~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~-~~~~l~~~------~~p~~~~~~~ 268 (442)
T TIGR00908 196 AIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAA-DAKELMGS------NNPLPEALES 268 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHhCCC------cchHHHHHHH
Confidence 8999999999999999999999999999999999999999999998777665555 66777544 2477777776
Q ss_pred HhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhh
Q 016144 195 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP 274 (394)
Q Consensus 195 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~ 274 (394)
.++ +..+...++.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+|+|++|++++.++++++.+.
T Consensus 269 ~~g---~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~ 342 (442)
T TIGR00908 269 IYG---GSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVN-RKKAPVLAIVVPGVIGFGLSLT 342 (442)
T ss_pred HhC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhC-CCCCcHHHHHHHHHHHHHHHHh
Confidence 664 223456677777788889999999999999999999999999 9999999 9999999999999998877553
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 016144 275 ILKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDT 353 (394)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (394)
+ ..+.+.++.++...+.|.+.+... ++|+++++.+||||.| .++..++++.+.+++..+..+...
T Consensus 343 --~---~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p-~~~~~~~l~~~~~~~~l~~~~~~~-------- 408 (442)
T TIGR00908 343 --G---QTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTP-GGILTPGVALVLACVALVTGFYVD-------- 408 (442)
T ss_pred --c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCC-CcchHHHHHHHHHHHHHHHHHHcC--------
Confidence 2 245677888888889999887754 4555667778999998 666777766666555544332210
Q ss_pred ccchHHHHHHHHHHHHHHhhhccceeee
Q 016144 354 FNYAPVALGVGLGLIMLWWLLDARKWFT 381 (394)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
.........+.++..++|+.++|+|++
T Consensus 409 -~~~~~~~~~~~~~~~~~~~l~~~~~~~ 435 (442)
T TIGR00908 409 -PRVVVGAVAIFVVLIGYYFLYSRHHLV 435 (442)
T ss_pred -hHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 111223455566667777777665544
No 8
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.3e-36 Score=298.85 Aligned_cols=314 Identities=15% Similarity=0.069 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
+....++.+++.+.+.+|.+|+|..+++|++++++|++.++++++.++....+++..+. . . ...+..++..++
T Consensus 125 ~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~----~-~--~~~~~~g~~~~~ 197 (445)
T PRK11357 125 LLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAP----T-T--TAIGATGSFMAL 197 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC----C-c--ccccccchHHHH
Confidence 34456677778889999999999999999999999999888877776543222111000 0 0 000111113478
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 192 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (394)
..++...+|+|.|+|.+++++||+||||||+|||+..++.+++++|++.+.+..... +++++.+++ .|..+.+
T Consensus 198 ~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~-~~~~l~~~~------~p~~~~~ 270 (445)
T PRK11357 198 LAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLM-PFDKLANSE------TPISDAL 270 (445)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCC------chHHHHH
Confidence 889999999999999999999999999999999999999999999999999888887 778776543 4666665
Q ss_pred HHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHh
Q 016144 193 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG 272 (394)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~ 272 (394)
... + ..|. +...++.+..+++.+++.++.+.+.+|++++|+|||.+| ++|+|+|||+|+|++|++++.++++++.
T Consensus 271 ~~~-~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~~~~~ 345 (445)
T PRK11357 271 TWI-P-ALGS-TAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALGIFFI 345 (445)
T ss_pred HHH-H-hcch-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 442 1 1122 255666777888899999999999999999999999999 9999999999999999999999998876
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 016144 273 LPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWD 352 (394)
Q Consensus 273 l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (394)
+. ..++.+.+..+....+.|.+........||+++.+||||.| ..+.+++++.+.+++.........
T Consensus 346 ~~-----~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p-~~~~~~~~~~~~~~~~~~~~~~~~------- 412 (445)
T PRK11357 346 FV-----SDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTP-AFGLMTTLAIASSLILVASTFVWA------- 412 (445)
T ss_pred HH-----cCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccC-CchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 53 34566777777777777887666554444555567899998 677777777666655544322211
Q ss_pred CccchHHHHHHHHHHHHHHhhhcccee
Q 016144 353 TFNYAPVALGVGLGLIMLWWLLDARKW 379 (394)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
+ .........+.+++...|+.++||+
T Consensus 413 ~-~~~~~~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 413 P-IPGLICAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred c-HHHHHHHHHHHHHhhhHHhheechh
Confidence 1 1112333444555555566555553
No 9
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.7e-36 Score=300.65 Aligned_cols=301 Identities=15% Similarity=0.142 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccccccceeecCCCCCCCCc-----hHHH
Q 016144 40 IGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT--TQSASYVFTHFEMSPEATGISSK-----PYAV 112 (394)
Q Consensus 40 ~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 112 (394)
.+++++.+++|++|+|..+++|++.+.+|+..++.+++.++..... +++....+.++ . ++.+++++ ..++
T Consensus 123 ~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 199 (478)
T TIGR00913 123 AIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYW-H--DPGAFAGGTIGGRFKGV 199 (478)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-C--CCCCCCCCCccchHHHH
Confidence 3455678899999999999999999999998888877766543211 11111222222 2 22233322 4588
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChh--hhhcCCC-CccCCCcHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFS--YLYDKSN-ETAGAFVPA 189 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~--~~~~~~~-~~~~~~p~~ 189 (394)
..++...+|+|.|+|.+++++||+||||||+|||++.+..+++++|++..++..... +++ ++.++.. ....++|..
T Consensus 200 ~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~-p~~~~~l~~~~~~~~~~~~p~~ 278 (478)
T TIGR00913 200 CSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLV-PYNDPRLLSSSSSSDSAASPFV 278 (478)
T ss_pred HHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeec-cCCChhhcccccCCCcCCCcHH
Confidence 899999999999999999999999999999999999999999999999888877777 433 2322211 000025654
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 269 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~ 269 (394)
.. .+.. |.+++..++.++.+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|++|++++.+++.
T Consensus 279 ~~-~~~~----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~-~~~~P~~Ai~~~~~~~~ 350 (478)
T TIGR00913 279 IA-IQNH----GIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVD-RRGVPYVAVIVSSLFGL 350 (478)
T ss_pred HH-HHHc----CCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhC-CCCCCHHHHHHHHHHHH
Confidence 33 2222 666688899999999999999999999999999999999999 9999999 77999999999999877
Q ss_pred HHhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------cCCcCCCcccccchhHHHHHHHHHHHHHHHHhc
Q 016144 270 ILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE------QKFNAGPFYLGKASRPICLIAFLWICYTCSVFL 342 (394)
Q Consensus 270 i~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (394)
+..+.. ...++.++.+.++++...++.|.+.+.+.+..|| +++.+||||.+ +++..++++.+++++..+..+
T Consensus 351 l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~ 429 (478)
T TIGR00913 351 LAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQ-TGPYGSYYALFFNILILIAQG 429 (478)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCC-CcchHHHHHHHHHHHHHHHHH
Confidence 544322 2345789999999999999999988775443332 23457899997 899999999999888888888
Q ss_pred cCCCCCCCCCC
Q 016144 343 LPTFYPISWDT 353 (394)
Q Consensus 343 ~~~~~~~~~~~ 353 (394)
++...|.+.+.
T Consensus 430 ~~~~~p~~~~~ 440 (478)
T TIGR00913 430 YVAFAPVKFSA 440 (478)
T ss_pred HHHHccCCCCH
Confidence 77766654443
No 10
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2e-36 Score=300.37 Aligned_cols=336 Identities=13% Similarity=0.069 Sum_probs=241.8
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhccccccccc--ccccceeecCCC
Q 016144 26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALTTQSAS--YVFTHFEMSPEA 102 (394)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~-l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~ 102 (394)
|++..++|...+..++++++.+++|++|.|..++++++..++.++. .+++++.+......+++.+ ...+++ . +
T Consensus 114 ~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~-~--p- 189 (507)
T TIGR00910 114 PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAF-F--P- 189 (507)
T ss_pred chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhc-C--C-
Confidence 4555667778888888899999999999999999999876655444 3333333333222122111 111122 1 1
Q ss_pred CCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCc
Q 016144 103 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 182 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~ 182 (394)
++.+ .+....+...+|+|.|+|.+++.+||+||||||+|||++.+++++.++|.+..+++...+ |++++...+
T Consensus 190 -~~~~--~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~-p~~~~~~~~--- 262 (507)
T TIGR00910 190 -DFSK--VGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVI-PGKEINLSA--- 262 (507)
T ss_pred -Cccc--ccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheec-Chhhcccch---
Confidence 1111 133445555689999999999999999999999999999999999999999888777777 555543221
Q ss_pred cCCCcHHHHHHHHhcccc-CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHH
Q 016144 183 AGAFVPAQILYDAFHGRY-HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV 261 (394)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al 261 (394)
+..+.+........ +..+...++.+..+++.+++.++++.+.+|+++++||||.+| ++|+|+| |+|+|++++
T Consensus 263 ----~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~n-k~~~P~~a~ 335 (507)
T TIGR00910 263 ----GVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMN-KHEVPVPLV 335 (507)
T ss_pred ----HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhC-cCCCcHHHH
Confidence 12233332222111 224566778888899999999999999999999999999999 9999999 889999999
Q ss_pred HHHHHHHHHHhhhcc----ccHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCcCCCccccc---chhHHHHHHHHH
Q 016144 262 WLCAAICIILGLPIL----KVNVVFTAITSICTIGWVGGYAVPIF-ARMVMAEQKFNAGPFYLGK---ASRPICLIAFLW 333 (394)
Q Consensus 262 ~~~~~ls~i~~l~~~----~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 333 (394)
+++++++.++.+... ++...++.+.++++....+.|.+.+. ..++|+|+++.+||||.|. ....++.+++++
T Consensus 336 ~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~ 415 (507)
T TIGR00910 336 IIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLL 415 (507)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHH
Confidence 999999887654321 23456777788899999999998765 4455667777889999962 235888999999
Q ss_pred HHHHHHHhccCCCCCCCCCCccchHHHH---HHHHHHHHHHhhhcccee
Q 016144 334 ICYTCSVFLLPTFYPISWDTFNYAPVAL---GVGLGLIMLWWLLDARKW 379 (394)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 379 (394)
+++..+..++|+..+...+.++|..+.+ .++.++..++|..++||+
T Consensus 416 ~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 416 SIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKG 464 (507)
T ss_pred HHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987777777788865554 334445566676665554
No 11
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=3.3e-36 Score=301.23 Aligned_cols=306 Identities=18% Similarity=0.173 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCC-chHHHHHH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISS-KPYAVILS 115 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 115 (394)
.++++++++.+.+|++|+|.++++|++++.+|++.++++++.++...+.. ++..... . +.+++.+ +..+++.+
T Consensus 163 ~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~-~--~~~~f~p~g~~g~l~g 236 (557)
T TIGR00906 163 FFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA---NWSITEE-K--GAGGFMPYGFTGVLSG 236 (557)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch---hcccccc-c--cCCCCCCcchHHHHHH
Confidence 45677778889999999999999999999999999998888887653321 1111111 1 1223322 23478999
Q ss_pred HHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHH
Q 016144 116 FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDA 195 (394)
Q Consensus 116 ~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 195 (394)
+...+|+|.|+|.+++++||+|||+||+|||++.++.+++++|++++++..... +++++..+ .|+..++..
T Consensus 237 ~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~v-p~~~l~~~-------~p~~~a~~~- 307 (557)
T TIGR00906 237 AATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMM-PYYLLDPD-------APFPVAFEY- 307 (557)
T ss_pred HHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccc-cHHHhCcC-------cHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999888 66665322 456555432
Q ss_pred hccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhc
Q 016144 196 FHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI 275 (394)
Q Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~ 275 (394)
.|.++...++.++.+++.+++.++.+++.+|++++|||||.+| ++|+|+|||+|+|++|+++.++++.++.++.
T Consensus 308 ----~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ail~~~iv~~il~~~~ 381 (557)
T TIGR00906 308 ----VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINATVVSGAIAALMAFLF 381 (557)
T ss_pred ----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 2666688888899999999999999999999999999999999 9999999999999999999999998876642
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---------------------------------------------
Q 016144 276 LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ--------------------------------------------- 310 (394)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------------------- 310 (394)
.++.+.++.++..++.|.+...+....|++
T Consensus 382 -----~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (557)
T TIGR00906 382 -----DLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLIL 456 (557)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 346677778888888888776644333311
Q ss_pred ----------------------------------------CCc--CCCcccccchhHHHHHHHHHHHHHHHHhccCCCCC
Q 016144 311 ----------------------------------------KFN--AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 348 (394)
Q Consensus 311 ----------------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (394)
|+. +++||.| +.|.++.+++..+++++... +
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p-~~p~~p~~~i~~~~~l~~~l------~ 529 (557)
T TIGR00906 457 GLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVP-LVPFLPALSILINIFLMVQL------D 529 (557)
T ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CchHHHHHHHHHHHHHHHcC------C
Confidence 222 5678888 88888888888887766432 0
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhccceeee
Q 016144 349 ISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 381 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
..++..+.+++.++.+.|+.|++||.+
T Consensus 530 ------~~~~~~~~~w~~~g~~~y~~yg~~~s~ 556 (557)
T TIGR00906 530 ------ADTWVRFAIWMAIGFLIYFLYGIRHSL 556 (557)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 336788999999999999999998864
No 12
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=3.8e-36 Score=296.84 Aligned_cols=289 Identities=14% Similarity=0.185 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccccc---cccccceeecCCCCCC-CCchHH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVAL-TTQSA---SYVFTHFEMSPEATGI-SSKPYA 111 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 111 (394)
..+++++++.+++|++|+|..+++|++.+.+|+..++++++.++.... +.++. ...+.++ . ++.++ +++..+
T Consensus 136 ~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~p~g~~~ 212 (469)
T PRK11049 136 VASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-W--NDGGMFPKGLSG 212 (469)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-C--CCCCCCcccHHH
Confidence 445567778899999999999999999999999999998887765321 11111 1123332 1 22233 222346
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
+..++...+|+|.|+|.+++++||+||||||+|||+..+.+.+.++|++......... +++++.++ ..|..+.
T Consensus 213 ~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~------~~p~~~~ 285 (469)
T PRK11049 213 FFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVT-PWSSVVPD------KSPFVEL 285 (469)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeec-CccccCcc------CCcHHHH
Confidence 8999999999999999999999999999999999999888899999999888877666 77776543 2466665
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 271 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~ 271 (394)
+.+. |.++...++.++.+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+|+|++|++++.++..+.
T Consensus 286 ~~~~-----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~tP~~Ai~~~~~~~~~~ 357 (469)
T PRK11049 286 FVLV-----GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLS-KRAVPAKGLTFSCICLLGG 357 (469)
T ss_pred HHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhC-CCCCCHHHHHHHHHHHHHH
Confidence 4332 566688889999999999999999999999999999999999 9999999 5599999999998776542
Q ss_pred h-hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcC--CCcccccchhHHHHHHHHHHHHHHHHhccC
Q 016144 272 G-LPILKV--NVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNA--GPFYLGKASRPICLIAFLWICYTCSVFLLP 344 (394)
Q Consensus 272 ~-l~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (394)
. +....+ .+.++.+.+.+++...+.|.+++... ++|||+|+.+ +|||.| .++..++++++++++..+...++
T Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p-~~~~~~~~~~~~~~~~~~~~~~~ 435 (469)
T PRK11049 358 VVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMP-LGKLMCWVCMAFFAFVLVLLTLE 435 (469)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCc-CcchHHHHHHHHHHHHHHHHHHc
Confidence 2 222222 35789999999999999999877644 4444444433 689997 78888888888887776665444
No 13
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=288.24 Aligned_cols=285 Identities=16% Similarity=0.186 Sum_probs=234.6
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCC
Q 016144 26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGI 105 (394)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (394)
|+...+.+...+++...+++.+.+|+.++|+..++|++++..|++.+.++++.+++....++..++...++ .++++
T Consensus 126 p~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f----~g~~~ 201 (479)
T KOG1287|consen 126 PLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF----EGSDT 201 (479)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccc----ccCcC
Confidence 34467888999999999999999999999999999999999999999999999987433222222211113 12222
Q ss_pred CCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCC
Q 016144 106 SSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGA 185 (394)
Q Consensus 106 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (394)
+...+..++...+|+|.|||...+.+||+|||+||+|||+..++.+++++|++.+++...++ ++|++.+++.
T Consensus 202 --~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vl-s~~e~l~S~a----- 273 (479)
T KOG1287|consen 202 --DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVL-SPDEILSSDA----- 273 (479)
T ss_pred --chHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEec-CHHHhcccch-----
Confidence 23468899999999999999999999999999999999999999999999999999999999 8888866654
Q ss_pred CcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHH
Q 016144 186 FVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCA 265 (394)
Q Consensus 186 ~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~ 265 (394)
.+.. +++..++.+. +++.+.+.++.+++.|+.+++.||+++++||+|++| +.|+..|+++.||+.+++++.
T Consensus 274 --Vav~----Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP--~~~s~i~~~~~TP~~allf~~ 344 (479)
T KOG1287|consen 274 --VAVT----FADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP--AFFSMISVRRFTPRPALLFSG 344 (479)
T ss_pred --HHHH----HHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc--HHHHhhcCCCCCChHHHHHHH
Confidence 2222 3333355544 999999999999999999999999999999999999 999999988889999999999
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCcCCCcccccchhHHHHHHHHHHHH
Q 016144 266 AICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFA-RMVMAEQKFNAGPFYLGKASRPICLIAFLWICY 336 (394)
Q Consensus 266 ~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (394)
.++++..+. +.++++++..++.....+.+.+.. ..+|+|+|+.+||+|.|...|.+-.+.++.++.
T Consensus 345 ~~~i~~~~~-----~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvv 411 (479)
T KOG1287|consen 345 LLSIVLSLI-----GDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVV 411 (479)
T ss_pred HHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhh
Confidence 999998776 478899999999999888888774 455667788999999995555555554444444
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=5.8e-36 Score=294.72 Aligned_cols=320 Identities=16% Similarity=0.172 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--ccccccceeecCCCCCCCCch-H
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS--ASYVFTHFEMSPEATGISSKP-Y 110 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 110 (394)
+.++++.+++++.+.+|++|+|..+++|++++.+|++.++.+++.++......++ ....++++ . ++.++.+++ .
T Consensus 125 ~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~g~~ 201 (452)
T TIGR01773 125 PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNL-T--GKGGFFPNGIG 201 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-c--CCCCcCcccHH
Confidence 3456778888889999999999999999999999999988887766532211111 11123333 2 223332233 4
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++...+|+|.|+|.+++++||+||||||+|||+..+...++++|++......... ++++....+. .|..+
T Consensus 202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-p~~~~~~~~~-----~p~~~ 275 (452)
T TIGR01773 202 AVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALL-PWNSPNLLEV-----GSYVA 275 (452)
T ss_pred HHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEe-CCCCcccccC-----CcHHH
Confidence 79999999999999999999999999999999999999999999999999877777666 4443222211 25544
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.. +.. |.+++..++.++.+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+|+|++|++++.+++++
T Consensus 276 ~~-~~~----g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~-~~~~P~~Ail~~~~~~~~ 347 (452)
T TIGR01773 276 VL-ELL----GIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKLN-KKGVPVQAVLASTFFSFL 347 (452)
T ss_pred HH-HHc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHH
Confidence 43 222 666678888889999999999999999999999999999999 9999999 779999999999999987
Q ss_pred Hhhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCcCCCccccc-chhHHHHHHHHHHHHHHHHhc-cCCC
Q 016144 271 LGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARM-VMAEQKFNAGPFYLGK-ASRPICLIAFLWICYTCSVFL-LPTF 346 (394)
Q Consensus 271 ~~l~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (394)
..+... .+++.++.+++..+...++.|.+.+...+ +|+++++.++||+.+. .+|..++++++++.+..+... +|..
T Consensus 348 ~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~ 427 (452)
T TIGR01773 348 TVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSM 427 (452)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccc
Confidence 765432 34678899999988888899998766543 4444455567777653 588888888888777776663 3321
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 347 YPISWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
.+..+....+.++...+|+.++||
T Consensus 428 --------~~~~~~~~~~~~~~~~~y~~~~~~ 451 (452)
T TIGR01773 428 --------RDEVLLTGLLTIIVLCSYLVFARR 451 (452)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555556666666665554
No 15
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-35 Score=292.47 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccccccccccceeecCCCCCCCCc-hHHHH
Q 016144 36 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-ALTTQSASYVFTHFEMSPEATGISSK-PYAVI 113 (394)
Q Consensus 36 ~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 113 (394)
+...++++++.+.+|++|+|..+++|.+++.+|++.++++++.++.. ..+.+.+...+.++ . ++.+|.++ ..++.
T Consensus 127 ~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~g~~~~~ 203 (456)
T PRK10238 127 WVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNL-W--DQGGFLPHGFTGLV 203 (456)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccc-C--CCCCCccccHHHHH
Confidence 34556667789999999999999999999999999888777654432 11111111122222 1 23344322 34677
Q ss_pred HHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHH
Q 016144 114 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILY 193 (394)
Q Consensus 114 ~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (394)
.++....|+|.|+|.+++.+||+||||||+|||+..+...+.+.|+.......... |++++.++ +.|..+.+.
T Consensus 204 ~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~-p~~~l~~~------~sP~~~~~~ 276 (456)
T PRK10238 204 MMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLM-PWTRVTAD------TSPFVLIFH 276 (456)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ChhccCCC------CCcHHHHHH
Confidence 77888999999999999999999999999999999999999999998777766566 77776433 357766654
Q ss_pred HHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhh
Q 016144 194 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l 273 (394)
+. |.++...++++..+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+|+|++|++++.+++.+..+
T Consensus 277 ~~-----g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~-~~~~P~~Ail~~~~i~~l~~l 348 (456)
T PRK10238 277 EL-----GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVD-KRGVPVNTILVSALVTALCVL 348 (456)
T ss_pred Hc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCcHHHHHHHHHHHHHHHH
Confidence 33 566678888999999999999999999999999999999999 9999999 669999999999999887766
Q ss_pred h-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCc--CCCcccccchhHHHHHHHHHHHHHHHHhccC
Q 016144 274 P-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFN--AGPFYLGKASRPICLIAFLWICYTCSVFLLP 344 (394)
Q Consensus 274 ~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (394)
. ..++.+.++.++++++...+++|.+++.+.+++||+ ++. +++|+.+ +++..++++++++.+..+...+.
T Consensus 349 ~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 422 (456)
T PRK10238 349 INYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPAL-LYPLGNWICLLFMAAVLVIMLMT 422 (456)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHc
Confidence 5 356678999999999999999999998866555443 222 3445544 89999999999998888877654
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=2.3e-35 Score=289.46 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=219.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCc
Q 016144 29 FAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSK 108 (394)
Q Consensus 29 ~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (394)
..++++..++.++++++.+.+|++|+|..+++|++.+..+++.++++++.++...+.+ .+ .+.+ + +.+.+ .
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~---~~-~~~~-~---~~~~~-~ 187 (438)
T PRK10655 117 TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPS---LY-VAAW-N---PHHLP-F 187 (438)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---cc-cCCc-C---ccCCc-h
Confidence 3456777888888899999999999999999999999999888888777665432211 11 1112 1 11111 1
Q ss_pred hHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcH
Q 016144 109 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 188 (394)
Q Consensus 109 ~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (394)
..++..++...+|+|.|+|.+++++||+||||||+|||++.+..+++++|++...+..... +++++.+++ .|.
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~-~~~~l~~~~------~p~ 260 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIV-PNMELANST------APF 260 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhhcc------chH
Confidence 3477888889999999999999999999999999999999999999999999888888777 667765442 467
Q ss_pred HHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHH
Q 016144 189 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC 268 (394)
Q Consensus 189 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls 268 (394)
.+.+.+.++ +++..++.+..+++.+++.++++.+.+|++++|+|||.+| ++|+|+| |+|+|+++++++++++
T Consensus 261 ~~~~~~~~g-----~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~-~~~tP~~all~~~~i~ 332 (438)
T PRK10655 261 GLAFAQMFN-----PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVT-KVDAPVQGMLIIVVIQ 332 (438)
T ss_pred HHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhC-cCCCCHHHHHHHHHHH
Confidence 676666653 2366777888889999999999999999999999999999 9999999 6799999999999988
Q ss_pred HHHhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcccccchhHHHHHHHHHHHH
Q 016144 269 IILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKASRPICLIAFLWICY 336 (394)
Q Consensus 269 ~i~~l~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (394)
.++.+....+ .+.++.+.++.++...+.|.+++.+. ++|+|+++.+||||.+ +.++.++.+.+++
T Consensus 333 ~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~---~~~~~~~~~~~~~ 400 (438)
T PRK10655 333 SLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVA---NFIAFVGALYSFY 400 (438)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH---HHHHHHHHHHHHH
Confidence 8766543222 36799999999999999999988755 4555556667888865 3444455444443
No 17
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.9e-35 Score=292.21 Aligned_cols=315 Identities=15% Similarity=0.120 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-----cccccccccceeecCCCCCC-CCchH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT-----TQSASYVFTHFEMSPEATGI-SSKPY 110 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (394)
...+++.++.+.+|++|+|..+++|.+++.+|++.++.+++.++..... .++....++++ +..+| +++..
T Consensus 131 ~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ 206 (471)
T PRK11387 131 PWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL----TAEGWFPHGGL 206 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc----CCCCCCcccHH
Confidence 3344556678899999999999999999999999988877766542110 01111122333 22344 33345
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++...+|+|.|+|.+++.+||+||||||+|||++.++.++.++|++..++..... ++++...+ ..|..+
T Consensus 207 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~~~~~------~~p~~~ 279 (471)
T PRK11387 207 PILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI-PMQQAGVE------KSPFVL 279 (471)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-CccccCcc------CChHHH
Confidence 78888899999999999999999999999999999999999999999999999888888 55555332 246666
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
++.+. |.+++..++.++.+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|++|+++..+++++
T Consensus 280 ~~~~~-----g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~-~~~~P~~Ail~~~~~~~l 351 (471)
T PRK11387 280 VFEKV-----GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLT-KRGIPLTALSVSMLGGLL 351 (471)
T ss_pred HHHHc-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhC-CCCCcHHHHHHHHHHHHH
Confidence 54432 667788899999999999999999999999999999999999 9999999 679999999988776654
Q ss_pred Hhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCC-----cCCCcccccchhHHHHHHHHHHHHHHHHhcc
Q 016144 271 LGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKF-----NAGPFYLGKASRPICLIAFLWICYTCSVFLL 343 (394)
Q Consensus 271 ~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (394)
..+.. ..+++.++.+.++.+...++.|...+... ++||++++ .+||||.+ ..+.+++++++.+++.+....+
T Consensus 352 ~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 430 (471)
T PRK11387 352 ALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAP-WYPLTPILGFVLCLLACVGLAF 430 (471)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCC-CccHHHHHHHHHHHHHHHHHHh
Confidence 43321 23456788889999999999999886644 34443332 35789987 6667777776666555543322
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 344 PTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
+. +. .........+++++...|+.++|+
T Consensus 431 ~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 431 DP------SQ-RIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred hH------HH-HHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 11 112233444444566666665554
No 18
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=4.9e-35 Score=286.94 Aligned_cols=296 Identities=16% Similarity=0.099 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc--cccccceeecCCCCCCCCchH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA--SYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 110 (394)
.....++.+++++.+.+|++|+|..+++|.+++.+|++.++.+++.++....+.++. ...+.+..+ ++..++++..
T Consensus 104 ~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~--~~~~~p~g~~ 181 (446)
T PRK10197 104 IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWD--SGGFMPNGFG 181 (446)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCC--CCCCCcccHH
Confidence 345677888899999999999999999999999999999988887766533221111 111111101 1111232334
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++...+|+|.|+|.+++.+||+||||||+|||+..+...+.++|++..+...... ++++. +.+. ..+...
T Consensus 182 ~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~-p~~~~-~~~~----~~~~~~ 255 (446)
T PRK10197 182 AVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALI-PWNMP-GLKA----VGSYRS 255 (446)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheec-CcCcc-cccc----cCcHHH
Confidence 89999999999999999999999999999999999999999999999999999988888 55542 2211 123333
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.. +.. |.+++..++++..+++.+++.++++++.+|+++++||||.+| ++|+|+| |+|+|++|++++.+++++
T Consensus 256 ~~-~~~----g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~~~~l 327 (446)
T PRK10197 256 VL-ELL----NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP--AVMGKIN-RSKTPYVAVLLSTGAAFL 327 (446)
T ss_pred HH-HHc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-cCCCcHHHHHHHHHHHHH
Confidence 32 222 666788899999999999999999999999999999999999 9999999 889999999999888776
Q ss_pred Hhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cCCcCCCcccccchhHHHHHHHHHHHHHHHHhccCC
Q 016144 271 LGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE---QKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPT 345 (394)
Q Consensus 271 ~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (394)
..+.. ..+.+.++.+.+..+....+.|.+.+.+.++.|| +++.++|||.+ ++|..++++++++.+..+...+++
T Consensus 328 ~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~-~~p~~~~~~i~~~~~~~~~~~~~~ 405 (446)
T PRK10197 328 TVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMW-LYPWLTWLVIGFITFVLVVMLFRP 405 (446)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CcchHHHHHHHHHHHHHHHHHHCc
Confidence 65432 2335689999999999999999988775544333 23346688877 888999988888877776665553
No 19
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=3.9e-35 Score=288.46 Aligned_cols=288 Identities=16% Similarity=0.104 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc--cc-ccccccccccceeecCCCCCC-CCchH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV--AL-TTQSASYVFTHFEMSPEATGI-SSKPY 110 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (394)
......+++++.+.+|++|+|..+++|.+++.+|+..++++++.++.. .. +++.....++++ . ++.++ +++..
T Consensus 124 ~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~-~--~~~g~~~~g~~ 200 (461)
T PRK10746 124 QWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNL-T--EHGGFFAGGWK 200 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccc-c--CCCCcCcccHH
Confidence 344556667788899999999999999999999999888888766532 11 111112233444 2 22222 33345
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++..++|+|.|+|.+++.+||+||||||+|||+..+...+.++|++..+...... |++++..+ +.|+.+
T Consensus 201 g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~-p~~~~~~~------~sp~v~ 273 (461)
T PRK10746 201 GFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIF-PWNEIGSN------GSPFVL 273 (461)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCCCC------CCcHHH
Confidence 88899999999999999999999999999999999999999999999999988888888 77776443 357777
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.+.+. |.+....++++..+++.+++.++.+++.||++++|||||.+| ++|+|+| |+|+|++|++++.+...+
T Consensus 274 ~~~~~-----g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP--~~~~~~~-~~g~P~~al~~~~~~~~l 345 (461)
T PRK10746 274 TFAKI-----GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLP--AAMAKVS-RHGVPVAGVAVSILILLV 345 (461)
T ss_pred HHHHh-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHHhC-CCCCcHHHHHHHHHHHHH
Confidence 75543 566577888999999999999999999999999999999999 9999999 789999999988654433
Q ss_pred Hh---hhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCC--cCCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 271 LG---LPILKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKF--NAGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 271 ~~---l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
.. +........++.+.+++++..++.|...+.+. ++||++++ +++|||.+ ++|...+++++.++...+..
T Consensus 346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~ 421 (461)
T PRK10746 346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSI-LFPWANYLTMAFLICVLIGM 421 (461)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 21 11223456799999999999999999887754 44443332 46799976 88888888777776665554
No 20
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=3.6e-35 Score=291.34 Aligned_cols=293 Identities=15% Similarity=0.104 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccccccceeecCCCCCCCCchHHHHH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT--TQSASYVFTHFEMSPEATGISSKPYAVIL 114 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (394)
....+++++.+.+|++|+|..+++|.+++..|+..++.+++.++..... .+..+..++++ .+ ++..++++..+++.
T Consensus 132 ~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~~~~~~ 209 (489)
T PRK10836 132 IWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNW-TI-GDAPFAGGFAAMIG 209 (489)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccC-CC-CCCCCcccHHHHHH
Confidence 3456667778999999999999999999999999888877665543111 11111222333 20 11122222335565
Q ss_pred HHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhh--cCCCCccCCCcHHHHH
Q 016144 115 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLY--DKSNETAGAFVPAQIL 192 (394)
Q Consensus 115 ~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~ 192 (394)
+....+|+|.|+|.+++.+||+||||||+|||+..++..+.++|++........+ +.++.. .++.......|....+
T Consensus 210 ~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v-p~~~~~~~~~~~~~~~~sp~~~~~ 288 (489)
T PRK10836 210 VAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLII-PYTDPSLLRNDVKDISVSPFTLVF 288 (489)
T ss_pred HHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec-CCCChhhhccccccccCCcHHHHH
Confidence 6666789999999999999999999999999999999999999999998888888 433321 1111000035665554
Q ss_pred HHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHh
Q 016144 193 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG 272 (394)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~ 272 (394)
.+. |.++...++.++.+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+|+|++|++++.+++++..
T Consensus 289 ~~~-----g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~-~~~~P~~All~~~~~~~l~~ 360 (489)
T PRK10836 289 QHA-----GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLS-RGGVPRNALYATTVIAGLCF 360 (489)
T ss_pred HHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHH
Confidence 432 555678888999999999999999999999999999999999 9999999 67999999999999988776
Q ss_pred hh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cCCc-CCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 273 LP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE-----QKFN-AGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 273 l~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
+. ..+++..++++.++++...++.|...+.+.++.|| +++. ++|||.| ..|..++++.+.+++.....
T Consensus 361 l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p-~~p~~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 361 LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSG-FFPLGPIFAFVLCLIITLGQ 435 (489)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 54 33445678889999999999999988775444333 2343 4799998 77777777777776665543
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=6e-35 Score=286.86 Aligned_cols=281 Identities=17% Similarity=0.146 Sum_probs=219.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
.++++..++..+++++.+.+|++|+|..+++|++.+.+|++.++.+++.++...++++ + ...+ +..+++ +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~---~-~~~~----~~~~~~-~~ 190 (445)
T PRK10644 120 KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGET---Y-MAAW----NVSGLG-TF 190 (445)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---c-cCCc----cccccc-hH
Confidence 3467777788888889999999999999999999999999888877776654322111 0 1112 111221 23
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
.++..++...+|+|.|+|.+++++||+||||||+|||++.++.+++++|++..++..... +.+++..+ ..|..
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~-~~~~l~~~------~~p~~ 263 (445)
T PRK10644 191 GAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI-PNAALRVS------ASPFG 263 (445)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcC------CChHH
Confidence 467778889999999999999999999999999999999999999999999999998888 66666543 25777
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 269 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~ 269 (394)
++..+.+++ ++..++.+...++.+++.++.+...+|++++|+|||.+| ++|+|+| |+|+|++|++++++++.
T Consensus 264 ~~~~~~~g~-----~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~-~~~tP~~Ai~~~~~i~~ 335 (445)
T PRK10644 264 DAARMALGD-----TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLLIVGVLMT 335 (445)
T ss_pred HHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHHH
Confidence 776666532 366777778888899999999999999999999999999 9999999 57999999999999998
Q ss_pred HHhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCcCCCcccccchhHHHHHHHHHHHHHHH
Q 016144 270 ILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGKASRPICLIAFLWICYTCS 339 (394)
Q Consensus 270 i~~l~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (394)
++.+....+ .+.++.+.+++++..++.|.+++.+..+.||+ ++.++| +.+.+++++++++++...
T Consensus 336 l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 336 IFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP-----AYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc-----chhHHHHHHHHHHHHHHH
Confidence 876543222 35799999999999999999988866554433 322232 456777777777777654
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=6.4e-35 Score=287.48 Aligned_cols=314 Identities=13% Similarity=0.155 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc--cc--ccccccccccceeecCCCCCCCCchHHHH
Q 016144 38 MYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV--AL--TTQSASYVFTHFEMSPEATGISSKPYAVI 113 (394)
Q Consensus 38 i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (394)
..++++++.+.+|++|+|..+++|.+++.+|+..++++++.++.. .. ..++.......+ . ++..++++..+++
T Consensus 126 ~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~g~~~~~ 202 (457)
T PRK10580 126 WVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLW-S--NGGFFSNGWLGMV 202 (457)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccC-C--CCCCCCcchHHHH
Confidence 355666788999999999999999999999999888777655321 11 111111111112 2 2233443344888
Q ss_pred HHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHH
Q 016144 114 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILY 193 (394)
Q Consensus 114 ~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (394)
.++...+|+|.|+|.+++.+||+||||||+|||++.+..++.++|++......... |++++... +.|.....
T Consensus 203 ~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~i~~~------~~p~~~~~- 274 (457)
T PRK10580 203 MSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIY-PWNQVGTN------GSPFVLTF- 274 (457)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ccCCCCcc------CChHHHHH-
Confidence 89999999999999999999999999999999999999999999999888877777 66666432 35665543
Q ss_pred HHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhh
Q 016144 194 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l 273 (394)
+.. |.++...++.+..+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|++|++++.++..+..+
T Consensus 275 ~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~ 347 (457)
T PRK10580 275 QHM----GITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTS-RRGIPWVTVLVMTTALLFAVY 347 (457)
T ss_pred HHc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHHHHHHHHHHHHH
Confidence 222 666677888888889999999999999999999999999999 9999999 579999999999776554332
Q ss_pred h-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCcCCCcccccchhHHHHHHHHHHHHHHHHh-ccCCCC
Q 016144 274 P-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ----KFNAGPFYLGKASRPICLIAFLWICYTCSVF-LLPTFY 347 (394)
Q Consensus 274 ~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 347 (394)
. ...+.+.++.+.++++....+.|.+++......||+ +.+++|||.| .++..++++++++.+..... .+|..
T Consensus 348 ~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~- 425 (457)
T PRK10580 348 LNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVP-GGVATTIGGLIFLVFIIGLIGYHPDT- 425 (457)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC-CccHHHHHHHHHHHHHHHHHHHCccH-
Confidence 2 234457789999999999999999887755443332 2344689998 88999999988888877664 33321
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 348 PISWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
.........+++++.+.|..++|+
T Consensus 426 -------~~~~~~~~~~~~~~~~~y~~~~~~ 449 (457)
T PRK10580 426 -------RISLYVGFAWIVLLLIGWMFKRRH 449 (457)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223355555666666667665543
No 23
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=282.16 Aligned_cols=334 Identities=14% Similarity=0.107 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-ccccccceeecCCCCCCCCchHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS-ASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.+..+...++++++.++|.+|+|.++..+.+++.+|+++++.+++.++...-+..+ ..+...++.. ++..+.++..+
T Consensus 158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~--~pg~F~~gf~g 235 (541)
T COG0833 158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWH--DPGAFAGGFKG 235 (541)
T ss_pred CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeec--CCCCCCcchHH
Confidence 35566667888899999999999999999999999999999999988764322222 2222233314 44556666779
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccC-hhhhhcCCCCccCCCcHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQD-FSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~ 190 (394)
++..+..+.|+|.|.|.+...++|.|||+|++|||+......+.++|++..+.+...+|. .+++.+++.++....|+.-
T Consensus 236 ~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvi 315 (541)
T COG0833 236 FCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVI 315 (541)
T ss_pred HHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhH
Confidence 999999999999999999999999999999999999999999999999999999988852 2234433322222468776
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
++.+. |.+..+.+++..++++.+++.|+.+++.||++++||+||..| |+|+|+| |+|+|++|++++.+++.+
T Consensus 316 a~~~~-----Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~AP--k~f~~~~-r~GvP~~al~vt~~fg~l 387 (541)
T COG0833 316 AIKNA-----GIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAP--KIFAKVD-RRGVPLVALLVTLLFGLL 387 (541)
T ss_pred hHHhc-----CCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCc--hHHHhhC-CCCCchHHHHHHHHHHHH
Confidence 65544 778899999999999999999999999999999999999999 9999999 779999999999999988
Q ss_pred Hhhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------CCcCCCcccccchhHHHHHHHHHHHHHHHHhcc
Q 016144 271 LGLPIL-KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ------KFNAGPFYLGKASRPICLIAFLWICYTCSVFLL 343 (394)
Q Consensus 271 ~~l~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (394)
..+-.. ..+..|+++.+++++..++.|...+++.++.||. ...+-|||.| .+|..++.+++.+++..+.-.+
T Consensus 388 afl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~-~~p~g~~~~~~~~~li~i~q~y 466 (541)
T COG0833 388 AFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSP-FGPYGPIYGLILCILILIGQGY 466 (541)
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCC-CccHHHHHHHHHHHHHHHHcch
Confidence 665322 3445999999999999999999887765544322 2345689998 8888888888888887777555
Q ss_pred CCCCCCCCCCcc-chHHHHHHHHHHHHHHhhhccc
Q 016144 344 PTFYPISWDTFN-YAPVALGVGLGLIMLWWLLDAR 377 (394)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 377 (394)
....|.....-+ ...+....++++..+.|.+++|
T Consensus 467 ~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 467 VAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred heeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 555554333111 1223334444444455555554
No 24
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=6.1e-35 Score=290.84 Aligned_cols=277 Identities=14% Similarity=0.120 Sum_probs=213.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc-ceeecCCCCC
Q 016144 26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFT-HFEMSPEATG 104 (394)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 104 (394)
|++..+.|...+++++++++.+.+|++|+|..+++|.+.+.+|++.++++++.++.....++..+.... .+ . +
T Consensus 156 ~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f-~---~-- 229 (501)
T TIGR00911 156 PDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAF-E---G-- 229 (501)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccccc-C---C--
Confidence 556667788888999999999999999999999999999999999988888877654322111111111 11 1 1
Q ss_pred CCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccC
Q 016144 105 ISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 184 (394)
Q Consensus 105 ~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (394)
..++..++..++...+|+|.|+|.+++++||+|||+||+|||+..++.+++++|++..++..... +.+++.+++.
T Consensus 230 ~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~-~~~~l~~~~~---- 304 (501)
T TIGR00911 230 TETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL-SPEELLASLA---- 304 (501)
T ss_pred CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcChH----
Confidence 11234588889999999999999999999999999999999999999999999999999988888 7777754421
Q ss_pred CCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHH
Q 016144 185 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLC 264 (394)
Q Consensus 185 ~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~ 264 (394)
+........+ | +...++.++..++.+++.++.+.+.+|++++|||||.+| ++|+|+|||+++|++++++.
T Consensus 305 --~~~~~~~~~~----g--~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~v~~~~~~P~~all~~ 374 (501)
T TIGR00911 305 --VAVDFGERLL----G--VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP--SLLSMIHVKRLTPLPSLLIV 374 (501)
T ss_pred --HHHHHHHHHh----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhcCCCCCCHHHHHHH
Confidence 1112222222 3 256677888888999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCcCCCcccccchhHHHH
Q 016144 265 AAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIF-ARMVMAEQKFNAGPFYLGKASRPICL 328 (394)
Q Consensus 265 ~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (394)
.+++++.... + .+..+.++.+....+.|.+... ..++|+|+++.+||||.|.+.+.++.
T Consensus 375 ~~i~~l~~~~--~---~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~ 434 (501)
T TIGR00911 375 CTLTLLMLFS--G---DIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFL 434 (501)
T ss_pred HHHHHHHHcc--C---CHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHH
Confidence 8888765432 2 2344666777888888988765 55666677888999999843344333
No 25
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-35 Score=270.99 Aligned_cols=326 Identities=15% Similarity=0.174 Sum_probs=260.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc-ccccccceeecCCCCC
Q 016144 28 YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT--TQS-ASYVFTHFEMSPEATG 104 (394)
Q Consensus 28 ~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 104 (394)
++.+..+.++.+++.+++...+|..++|.++..|..+..+|++.++.+++.+...... +.+ ....+++. . ++.+
T Consensus 120 ~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl-~--~hGG 196 (462)
T COG1113 120 FWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNL-W--DHGG 196 (462)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccc-c--cCCC
Confidence 4445558888899999999999999999999999999999999999999987653211 111 13344554 2 3344
Q ss_pred -CCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCcc
Q 016144 105 -ISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA 183 (394)
Q Consensus 105 -~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (394)
++++..+++.++...+|+|.|.|.+...++|+|||||++|||+-.-...+.++|+.....+.... ||+++..+
T Consensus 197 ffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~-PW~~~~~~----- 270 (462)
T COG1113 197 FFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLY-PWNQIGED----- 270 (462)
T ss_pred cCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheec-cccccCCC-----
Confidence 45555799999999999999999999999999999999999999999999999999888888888 99887554
Q ss_pred CCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHH
Q 016144 184 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 263 (394)
Q Consensus 184 ~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~ 263 (394)
++|+.+.+... |.++...++++.++.+.+++.|+.+++.+|++|++|+||..| |.|+|+| |+++|++++++
T Consensus 271 -~SPFV~~f~~i-----Gi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~AP--k~~~kls-k~gVP~~ai~~ 341 (462)
T COG1113 271 -GSPFVTVFSLI-----GIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFAKLS-KRGVPVNAILL 341 (462)
T ss_pred -CCcHHHHHHHc-----CCcccccceeEEEeechhhcccccccccchHHHHHhhcCccc--HhHhhcc-ccCCCHHHHHH
Confidence 46888776554 888899999999999999999999999999999999999999 9999999 88999999999
Q ss_pred HHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CCcCCCcccccchhHHHHHHHHHHHHHHH
Q 016144 264 CAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ---KFNAGPFYLGKASRPICLIAFLWICYTCS 339 (394)
Q Consensus 264 ~~~ls~i~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (394)
+.+...+..++. ..+.+.|+.+.+.++...+..|.+.+.+....||. ..++.+||.+ +.|..+++.+++.+...+
T Consensus 342 s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~-~~p~~~~l~l~fl~~vlv 420 (462)
T COG1113 342 SAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMP-LYPFTNYLTLAFLAFVLV 420 (462)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccc-cccHHHHHHHHHHHHHHH
Confidence 998888766543 34678999999999999999999888866554442 2345678888 888888888888877777
Q ss_pred HhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhcccee
Q 016144 340 VFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 379 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
...+.... ........+++++..+.|+.++||+
T Consensus 421 ~m~~~~~t-------~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 421 LMLFDPDT-------RISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHcCccc-------chHHHHHHHHHHHHHHHHHHhhhhh
Confidence 76554221 2233444455555555565554443
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=5e-34 Score=279.50 Aligned_cols=269 Identities=16% Similarity=0.167 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSF 116 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (394)
+.+++++++.+.+|++|+|..+|+|.+++.+|++.++++++.++...+ .. .+.++ .+. +..++..++
T Consensus 135 ~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~---~~--~~~~~----~~~----~~~~~~~~~ 201 (429)
T TIGR00909 135 LPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFA---SN--NYTPF----MPM----GFGGVGAAT 201 (429)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCc---HH--hcCCC----CCC----cHHHHHHHH
Confidence 456778889999999999999999999999999988877766554321 11 11222 111 233788889
Q ss_pred HHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHh
Q 016144 117 LVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAF 196 (394)
Q Consensus 117 ~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 196 (394)
...+|+|.|+|.+++++||+|||+|++||++..+..++.++|++..+...... +.+++.+++ .|......+.
T Consensus 202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~- 273 (429)
T TIGR00909 202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAV-PWRQLAGST------APLSLVGYDL- 273 (429)
T ss_pred HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHhCCCC------cHHHHHHHHh-
Confidence 99999999999999999999999999999999999999999999998888777 777765543 4555554432
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhcc
Q 016144 197 HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPIL 276 (394)
Q Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~ 276 (394)
+++++..++.+...++.+++.++.+.+.+|++++++|||.+| ++|+|+|||+++|++|++++.++++++...
T Consensus 274 ----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~-- 345 (429)
T TIGR00909 274 ----GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAALLASL-- 345 (429)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHH--
Confidence 556688899999999999999999999999999999999999 999999999999999999999998876543
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHH
Q 016144 277 KVNVVFTAITSICTIGWVGGYAVPIF-ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTC 338 (394)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (394)
..++.+.++.+....+.|.+.+. ..++|+|+++.+||||.+ ..+..+.+....+.+..
T Consensus 346 ---~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 404 (429)
T TIGR00909 346 ---VPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP-LVPVLPVLVVSYCIYLL 404 (429)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cchHHHHHHHHHHHHHH
Confidence 24678888899999999998766 445566677788999998 67777766655555533
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=9.6e-34 Score=280.17 Aligned_cols=287 Identities=15% Similarity=0.085 Sum_probs=222.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 31 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
++++..+.+++++++.+.+|++|+|..+|+|++++.+|++.++++++.++...+.+ .+. .++.. ....++++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~---~~~-~~~~~-~~~p~~~~~~~ 199 (473)
T TIGR00905 125 NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLD---LFT-ADFWG-HDVPSLGSVFS 199 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hcc-cccCc-cCCCcccchHH
Confidence 45677778888888999999999999999999999999999888888776542211 111 11101 00112222345
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCc-HH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV-PA 189 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 189 (394)
++..++...+|+|.|+|.+++++||+|| |||+|||+..+..+++++|++...+..... +++++.+.+ .| ..
T Consensus 200 ~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~-~~~~l~~~~------~p~~~ 271 (473)
T TIGR00905 200 QVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVL-PQQELANLP------NPSMA 271 (473)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhhCC------CchHH
Confidence 7888899999999999999999999999 999999999999999999999999888877 777876553 46 44
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 269 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~ 269 (394)
+...... ++++..++.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+|| +|+|++|++++.+++.
T Consensus 272 ~~~~~~~-----g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~~-~~tP~~Ai~~~~~i~~ 343 (473)
T TIGR00905 272 AVLEMIV-----GKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVNK-NGAPSVALLLTNILIQ 343 (473)
T ss_pred HHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhCc-cCCCHHHHHHHHHHHH
Confidence 5544443 33477888888999999999999999999999999999999 99999995 4999999999999988
Q ss_pred HHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHH
Q 016144 270 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV 340 (394)
Q Consensus 270 i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (394)
++.+......+.++.+.++.+...++.|.+++......||+++.++ .+. ++.+.++.++.+++++....
T Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~ 412 (473)
T TIGR00905 344 LFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK-IKN-RKALIVGVIACVYSIWLLYA 412 (473)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-ccc-chHHHHHHHHHHHHHHHHHH
Confidence 7665544456789999999999999999998875544433321111 122 26678888888877776543
No 28
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.6e-33 Score=275.64 Aligned_cols=305 Identities=14% Similarity=0.070 Sum_probs=227.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHH
Q 016144 32 KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 32 ~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
++...+++.+++++.+.+|.+|+|..++++.+.++++++.++.+++.+....+ +... ..++ . + .+ +++..+
T Consensus 118 ~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~---~~~~-~~~~-~--~-~~-~~~~~~ 188 (435)
T PRK10435 118 PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFD---AATY-AANW-N--T-SD-TTDGHA 188 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---HHhh-cccc-c--C-CC-CchHHH
Confidence 45555667778889999999999999999999998888776666555543221 1111 1222 1 1 11 123558
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
+..++...+|+|.|+|.+++.+||+||||||+|||+..+..+++++|++..+...... |++++.++ +.|....
T Consensus 189 ~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~-p~~~~~~~------~~p~~~~ 261 (435)
T PRK10435 189 IIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMF-PASVMAAS------GAPFAIS 261 (435)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcC------CCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888 77777544 3577766
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 271 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~ 271 (394)
+.+. +.+++..+++++.+++++++.+++++..+|..++|||||.+| |+|+|+| |+|+|++|++++++++.++
T Consensus 262 ~~~~-----~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~n-k~g~P~~Al~~~~~~~~~l 333 (435)
T PRK10435 262 ASTI-----LGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVD-KNGIPKKGLLLAAVKMTAL 333 (435)
T ss_pred HHHH-----hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHHHHH
Confidence 6544 444578888888899999999999999999999999999999 9999999 7899999999998877664
Q ss_pred hhh----ccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHhccC
Q 016144 272 GLP----ILK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLP 344 (394)
Q Consensus 272 ~l~----~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (394)
... ... ..+.++.+.++++...++.|.+.+...++. |++ ++|.+ ..+.++.++.+++++.....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~-~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~--- 404 (435)
T PRK10435 334 MILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRF-EGV----NIRNF-VSLICSVLGCVFCFIALMGA--- 404 (435)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----chhHH-HHHHHHHHHHHHHHHHHHHh---
Confidence 421 111 246899999999999999999988876543 222 12322 45677777777777755321
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHhhhccceeee
Q 016144 345 TFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT 381 (394)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
. +..+...+.+..+.|+.|.|||.+
T Consensus 405 ----------~--~~~~~~~~~~~~~~~~~~~~~~~~ 429 (435)
T PRK10435 405 ----------S--SFELAGTFIVSLIILMFYARKMHE 429 (435)
T ss_pred ----------h--HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 233444444555555556655443
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=5.5e-33 Score=274.38 Aligned_cols=285 Identities=16% Similarity=0.084 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
.....++.+++++.+.+|++|+|..+++|++.+.+|+++++++++.++....++...+..+.+. . +...+++...++
T Consensus 121 ~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 197 (468)
T TIGR03810 121 PPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNA-N--GGFSLGSVMTQV 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccc-c--ccCccccHHHHH
Confidence 4455667777888999999999999999999999999999888887665322211100001110 0 011122223467
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCc-HHHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV-PAQI 191 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~ 191 (394)
..++...+|+|.|+|.+++++||.|| |||+||++..+...+.++|++..+...... +.+++.+.+ .| ....
T Consensus 198 ~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~-~~~~l~~~~------~p~~~~~ 269 (468)
T TIGR03810 198 KNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIM-TQAQLAGLK------NPSMAYV 269 (468)
T ss_pred HHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhcCC------CchHHHH
Confidence 78888999999999999999999998 899999999999999999999999888888 777776543 34 4444
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 271 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~ 271 (394)
..+.. ++++..++.++.+++.+++.++++.+.+|++++|||||.+| ++|+|+| |+|+|+++++++.+++.++
T Consensus 270 ~~~~~-----g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~-~~~tP~~al~~~~~i~~~~ 341 (468)
T TIGR03810 270 LEHMV-----GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP--KYFGKEN-ANGAPTNALWLTNGLIQIF 341 (468)
T ss_pred HHHHc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-CCCCCHHHHHHHHHHHHHH
Confidence 44443 34588899999999999999999999999999999999999 9999999 7799999999999998776
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccC-CcCCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 272 GLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA-EQK-FNAGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 272 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
.+....+.+.++.+.++++...++.|.+++.+..+.| |++ .++|++ .+.++.++.+++++.....
T Consensus 342 ~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ 408 (468)
T TIGR03810 342 LLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRK-----QLLIGLVALLYAVWLIYAA 408 (468)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh-----hHHHHHHHHHHHHHHHHHh
Confidence 6544445688999999999999999998877544333 332 112222 2456667766666665543
No 30
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1e-32 Score=268.33 Aligned_cols=248 Identities=19% Similarity=0.173 Sum_probs=186.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 31 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
+++....++.+++++.+.+|++|+|..+|+|.+.+.+.+..+..+ .. .++.++.+..+.+. .+.++ .
T Consensus 111 ~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~----~~-~~~~~~~~~~~~~~----~~~~~----~ 177 (410)
T PRK11021 111 SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI----WW-AGDIKPADIPFPAP----GSIEW----S 177 (410)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HH-HcCCchhcCCCCCC----CCccH----H
Confidence 345566777888888999999999999999998876544332221 11 11112222211111 11223 3
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++...+|+|.|+|.+++++||+||||||+|||++.+..+++++|++.+.+..... ++++..++ +.|..+
T Consensus 178 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~-~~~~~~~~------~~~~~~ 250 (410)
T PRK11021 178 GLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFP-AYGDKQAA------AASLPG 250 (410)
T ss_pred HHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhc------cccHHH
Confidence 78889999999999999999999999999999999999999999999999888776555 44333222 245666
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.+.+.++ .. +..++.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+|+|+++++++.+++.+
T Consensus 251 ~~~~~~G----~~-~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~k~~-~~~tP~~ail~~~~i~~~ 322 (410)
T PRK11021 251 IFVQLFG----GY-ALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP--SYLARLS-ARGVPVNALNAVLGCCAV 322 (410)
T ss_pred HHHHHhC----ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHhhc-cCCCcHHHHHHHHHHHHH
Confidence 6555553 32 55677888889999999999999999999999999999 9999999 679999999999988877
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016144 271 LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMV 306 (394)
Q Consensus 271 ~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 306 (394)
..+........++.+.+.++...++.|.+......+
T Consensus 323 ~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~ 358 (410)
T PRK11021 323 SILLIYALGLNLEALIAYANGIFVLIYLLCMLAACK 358 (410)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654422223467888888888889999988665443
No 31
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=3.6e-32 Score=270.36 Aligned_cols=332 Identities=14% Similarity=0.149 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh---hhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 36 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIML---PLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 36 ~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
.++++.++++.+.+|.+|+|..+++|++.+.+++...+++++.. +...++....+...+++ .+.++.++.+ +.++
T Consensus 136 ~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~ 213 (496)
T PRK15238 136 GILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSF-VTSPNPAYQS-PIAV 213 (496)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhc-ccCCCCcccc-chHH
Confidence 35566666789999999999999999998888776543333221 11111111111111222 1001223332 3578
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 192 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (394)
+.++..+.|+|.|+|..++.+||+||||||+|||+..+..+++++|++..+...... |+++...+++......|.. .
T Consensus 214 ~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~ 290 (496)
T PRK15238 214 LSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVST-NWQQVLSNKSVNLGNITYV--L 290 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcC-chhhcCCccccchhccHHH--H
Confidence 888888999999999999999999999999999999999999999999877666655 6666544322000011111 1
Q ss_pred HHHhcc----ccC---------CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHH
Q 016144 193 YDAFHG----RYH---------NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN 259 (394)
Q Consensus 193 ~~~~~~----~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~ 259 (394)
.+.++. ..| ..++..++++..+++.+++.+++.++.+|.+++.+|||++| |+|+|+| |+|+|++
T Consensus 291 ~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k~n-k~g~P~~ 367 (496)
T PRK15238 291 MNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTKLN-KNGMPAN 367 (496)
T ss_pred HHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHhhC-cCCCcHH
Confidence 121111 111 13445567788899999999999999999999999999999 9999999 8899999
Q ss_pred HHHHHHHHHHHHhh-hccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccc---cchhHHHHHHHH
Q 016144 260 AVWLCAAICIILGL-PILK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLG---KASRPICLIAFL 332 (394)
Q Consensus 260 al~~~~~ls~i~~l-~~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 332 (394)
|++++.+++.++.+ ...+ .++.|+.+.++++...++.|.+.+.+.+++||+++.+|||+.+ +++..++.+.++
T Consensus 368 a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~ 447 (496)
T PRK15238 368 AMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVFKTKKSTLIATIVVVL 447 (496)
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceecCCcceehhHHHHHHH
Confidence 99999988886643 2323 2445899999999999999999988776666667778887773 366777777777
Q ss_pred HHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 333 WICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
++++.....++++. ..+++++.....+...++..+.|..|++|
T Consensus 448 ~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 490 (496)
T PRK15238 448 VVGFANVFTIIQPV---IEGDYQSTFWMIGGPVFFSILAWIIYQNY 490 (496)
T ss_pred HHHHHHHHheeCCC---cCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77776655555442 22446666555555555566666655444
No 32
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=8.1e-32 Score=263.76 Aligned_cols=306 Identities=25% Similarity=0.324 Sum_probs=231.5
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHhhhhhccccccccc--ccccceeecCCC
Q 016144 26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQV-AGGLVIIIMLPLVALTTQSAS--YVFTHFEMSPEA 102 (394)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i-~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~ 102 (394)
+++.+++|+..+++++++++.+.+|++|.|..+|+|++.+.+++ ..++++++.++...+.+.... ....+. .+
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~ 184 (426)
T PF13520_consen 109 PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTF----FP 184 (426)
T ss_dssp GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCS----SC
T ss_pred cccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccccccccccccccc----CC
Confidence 45556678899999999999999999999999999999999999 576777777766543221110 111111 33
Q ss_pred CCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCc
Q 016144 103 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 182 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~ 182 (394)
++++ +++.++...+|+|.|+|.+++++||.|| ||+|||+..+.+++.++|.+..++..... ++++....++.
T Consensus 185 ~~~~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~-~~~~~~~~~~~- 256 (426)
T PF13520_consen 185 SGWP----GFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGAL-PDDELANSSNS- 256 (426)
T ss_dssp SSSS----HHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-THCHHHTTTCH-
T ss_pred cccc----chhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecc-cchhhhccccc-
Confidence 3444 5788999999999999999999999877 89999999999999999999999999999 66666443220
Q ss_pred cCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHH
Q 016144 183 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVW 262 (394)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~ 262 (394)
.++.... .+.. +++++..++.+...++.+++.++.+.+.+|++++|+|||.+| ++|+|+| |+|+|+++++
T Consensus 257 --~~~~~~~-~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-k~~~P~~a~~ 326 (426)
T PF13520_consen 257 --PSPFAVL-ASAV----GGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP--KWFAKVN-KFGTPYNAII 326 (426)
T ss_dssp --HCHHHHH-HHHH----HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTS-SSSSCHHHHH
T ss_pred --ccccchh-hccc----cccccccccccccccccccccchhhcchhhcccccccccchh--hhhhhcc-ccCCceeeeh
Confidence 1122222 2222 445689999999999999999999999999999999999999 9999999 9999999999
Q ss_pred HHHHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHH
Q 016144 263 LCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV 340 (394)
Q Consensus 263 ~~~~ls~i~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (394)
+..+++.++.+.. ..+++.++.+.+..++...+.|.+..... +.|+|+++++| .+ ..+.+++++.+.+++....
T Consensus 327 ~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~-~~~~~~i~~~~~~~~~~~~ 402 (426)
T PF13520_consen 327 LVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR---IP-YRPPVGIIGIIIILFVIIA 402 (426)
T ss_dssp HHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH----H-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC---CC-cchHHHHHHHHHHHHHHHH
Confidence 9999997665432 22346788999999999999999887644 44444444433 11 2356777777777777777
Q ss_pred hccCCCCCCCCCCccch
Q 016144 341 FLLPTFYPISWDTFNYA 357 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~ 357 (394)
.++|...+...+.+.+.
T Consensus 403 ~~~~~~~~~~~~~~~~~ 419 (426)
T PF13520_consen 403 SFFPLINPATWASLIYA 419 (426)
T ss_dssp CCCHHSHCCCC-HCCHH
T ss_pred HHHhccccchhhhhhEE
Confidence 77765544444444443
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.8e-30 Score=271.03 Aligned_cols=294 Identities=15% Similarity=0.071 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---ccccccceeecCCCCCCCCchHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQS---ASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
..+++.+++++++++|++|+|..+|+|.++++++++.++.+++.++........ ..+..+.+..+ ...++++...+
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n-~~p~~~~~~~~ 281 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSEN-FIPGIPGPEGG 281 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhc-cCCCCCCcccH
Confidence 567888999999999999999999999999999999988887766542211000 00111111000 01122211124
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCcc---CC---
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA---GA--- 185 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~---~~--- 185 (394)
+...+...+++|+|+|+.++++||+|||+|++|||++.++.+++++|+++.+++..+. +.+...+.+.... .+
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~-~~d~~~~~~~~l~~~~~g~~~ 360 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACV-VRDATGDKNDTLVTNCTSAAC 360 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccc-cHhhhcccchhhhcccccchh
Confidence 7777777888999999999999999999999999999999999999999988777666 4333221110000 00
Q ss_pred ------CcHHHHHH---HHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCC
Q 016144 186 ------FVPAQILY---DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKV 256 (394)
Q Consensus 186 ------~p~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~ 256 (394)
.|....+. ..... .. ....++.++.+++++++.++++.+++|++++|||||.+|+.++|+|+|+|+++
T Consensus 361 f~~~~~~p~~~gL~~~~~~~~~--~~-~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~t 437 (953)
T TIGR00930 361 FSECAHNTCSYGLMNNLQVMSL--VS-PFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGE 437 (953)
T ss_pred hhhhcccchhhhhcchHHHHhh--hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCC
Confidence 01111110 11111 11 14578888999999999999999999999999999999988899999999999
Q ss_pred hHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCcCCC-cccccchhHHHHHHHHHH
Q 016144 257 PSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMV-MAEQKFNAGP-FYLGKASRPICLIAFLWI 334 (394)
Q Consensus 257 P~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 334 (394)
|++|+++++++++++.++ ..++.+..+.+.+++++|.+..++.+. +++++...|| ||. +.+++++++.+.+
T Consensus 438 P~~Alllt~iIa~l~ili-----~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~--~~~~~sllG~l~c 510 (953)
T TIGR00930 438 PLRAYLLTAFIAEGFILI-----AELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKY--YHWWLSLLGASLC 510 (953)
T ss_pred cHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc--chHHHHHHHHHHH
Confidence 999999999999988765 457888888999999999988775443 3333222233 443 3556666666666
Q ss_pred HHHHHH
Q 016144 335 CYTCSV 340 (394)
Q Consensus 335 ~~~~~~ 340 (394)
++.++.
T Consensus 511 ~~lmf~ 516 (953)
T TIGR00930 511 CAIMFL 516 (953)
T ss_pred HHHHHH
Confidence 665544
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-30 Score=256.29 Aligned_cols=284 Identities=23% Similarity=0.285 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
|....++.+++++.+++|++|+|..++++.+.+.++++.++++++.++...+.+. ...+... +. ..+...++
T Consensus 132 ~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~--~~~~~~~----~~--~~~~~~~~ 203 (466)
T COG0531 132 LLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN--GNLFAPF----NP--GGGSFGGI 203 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--cccCCCc----cc--ccchHHHH
Confidence 8899999999999999999999999999999999999999999998877644322 1111111 11 11123378
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL 192 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (394)
..++...+|+|.|+|.+++.+||+|||||++||++..+.+.++++|++.+.+..... +.+++..... ..|..+..
T Consensus 204 ~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~----~~p~~~~~ 278 (466)
T COG0531 204 LAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVL-PAGDLAASAP----SAPLALAA 278 (466)
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHhccCC----CccHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998 6555544311 14666665
Q ss_pred HHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHh
Q 016144 193 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG 272 (394)
Q Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~ 272 (394)
.... +.++..++.+..+++.+++.+++..+.+|.+++|+|||.+| ++|+|+|+|+++|+++++++.+++.++.
T Consensus 279 ~~~~-----g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~~~~~~~~~P~~a~~~~~ii~~~l~ 351 (466)
T COG0531 279 LFGG-----GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGIISLILL 351 (466)
T ss_pred HHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4443 25689999999999999999999999999999999999999 9999999999999999999999999332
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcccccch--hHHHHHHHHHHHH
Q 016144 273 LPILKVNVVFTAITSICTIGWVGGYAVPIFAR-MVMAEQKFNAGPFYLGKAS--RPICLIAFLWICY 336 (394)
Q Consensus 273 l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 336 (394)
+........++.+.++++...++.|.+...+. .+++|++++++++|.++.. +.++.+....++.
T Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (466)
T COG0531 352 LLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLY 418 (466)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence 22111145789999999999999999987755 4444556677888887322 3444444444444
No 35
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=6.1e-30 Score=251.44 Aligned_cols=323 Identities=16% Similarity=0.172 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc---ccc-ccceeecCCCCCCCCc-hHHHHHH
Q 016144 41 GLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA---SYV-FTHFEMSPEATGISSK-PYAVILS 115 (394)
Q Consensus 41 ~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 115 (394)
.++++...+|+.|+|..+..+......|++..+.+++.+++..-+..+. ++. ++.+ . ++..+.+. ..+++.+
T Consensus 161 ~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~-~--~~g~F~p~gf~Gv~s~ 237 (554)
T KOG1286|consen 161 DFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYW-H--DPGAFFPFGFKGVLSG 237 (554)
T ss_pred HHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCcccc-C--CCCCcCCCCcceeeHH
Confidence 4445566667777776666666666666666666666555432111111 222 2223 2 23333333 5599999
Q ss_pred HHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhh--hhcCCCCccCCCcHHHHHH
Q 016144 116 FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSY--LYDKSNETAGAFVPAQILY 193 (394)
Q Consensus 116 ~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~ 193 (394)
+..++|+|.|+|..+..+||+|||||++|+|+..++.++.++|++..+.+...+ |+++ +.++. +....+.
T Consensus 238 ~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~v-py~~~~L~~~~-------~~~spF~ 309 (554)
T KOG1286|consen 238 AATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLV-PYNDPRLDPGA-------ALASPFV 309 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEe-ccCccccCCCC-------ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 5554 43332 2333333
Q ss_pred HHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhh
Q 016144 194 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l 273 (394)
-..+.. +.+..+.+++++.+++..++.|+.+++.+|.+++||+||++| |+|+++||| |+|++|++++.+++.+..+
T Consensus 310 iai~~~-~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~P--k~f~~v~~~-g~P~~a~~v~~~~~~l~~~ 385 (554)
T KOG1286|consen 310 IAIGNA-GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAP--KFFARVDRR-GVPLVAVLVSGLFGALAAL 385 (554)
T ss_pred HHHhcc-CccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcc--hHHhhcCCC-CCchhHHHHHHHHHHHHHH
Confidence 233333 555567799999999999999999999999999999999999 999999966 9999999999999998776
Q ss_pred h-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC------CcCCCcccccchhHHHHHHHHHHHHHHHHhccCCC
Q 016144 274 P-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK------FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF 346 (394)
Q Consensus 274 ~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (394)
. .....+.+++++++.+++.++.|...+.+.+.+|+.. ..+.+|+.+ ..+...+.+.+...+.....++...
T Consensus 386 ~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~ 464 (554)
T KOG1286|consen 386 NFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAF 464 (554)
T ss_pred HhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCC-CCCchhHHHHHHHHHHHHHHHhccc
Confidence 4 2334578999999999999999999988877766542 233456664 3444444444444444444444333
Q ss_pred CCCC--CCCccc-hHHHHHHHHHHHHHHhhhcccee
Q 016144 347 YPIS--WDTFNY-APVALGVGLGLIMLWWLLDARKW 379 (394)
Q Consensus 347 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
.+.. .+.... ..+....+.++..+.+..++|.+
T Consensus 465 ~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~ 500 (554)
T KOG1286|consen 465 FPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPT 500 (554)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHHHheeeccc
Confidence 3322 111111 11222223444445555566554
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.97 E-value=1.5e-31 Score=265.33 Aligned_cols=296 Identities=20% Similarity=0.179 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh-hhcccccccccc-------cccceeecCCC--CCCC
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIML-PLVALTTQSASY-------VFTHFEMSPEA--TGIS 106 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~-~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~ 106 (394)
+++.+++++.+.+|++|+|..+++|.++..+|++.++.+++.+ .....+.++.+. .+.+... ++ ..-.
T Consensus 119 ~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (478)
T PF00324_consen 119 LIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFP--PGFTDPSG 196 (478)
T ss_pred hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccc--cccccccc
Confidence 4577788899999999999999999999999999999998887 322111111111 0011101 10 0001
Q ss_pred CchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCC
Q 016144 107 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 186 (394)
Q Consensus 107 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (394)
.+..+++.++..++++|.|+|..+..+||+||||||+|||+..++++++++|++..++..... ++++....++... +.
T Consensus 197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~-~~~~~~~~~~~~~-~s 274 (478)
T PF00324_consen 197 GGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAV-PYDNLGLTAASNS-AS 274 (478)
T ss_pred cchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhccccc-Cccchhhcccccc-cc
Confidence 114589999999999999999999999999999999999999999999999999999999888 5555433321000 12
Q ss_pred cHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHH
Q 016144 187 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 266 (394)
Q Consensus 187 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ 266 (394)
|+...... .+.++...+++++.+++.+++.++.+++.+|++++|+|||.+| +.+.++|+|+|+|++|++++.+
T Consensus 275 p~~~~~~~-----~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~ 347 (478)
T PF00324_consen 275 PFVIAAQY-----SGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP--KKFFARHPKNGVPYVAILVSSI 347 (478)
T ss_pred chhhhhhh-----cccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh--hhhhhhhhcCCceEEEEeeehh
Confidence 44444322 2677789999999999999999999999999999999999999 9999989999999999999999
Q ss_pred HHHHHhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCC-----cCCCcccccchhHHHHHHHHHHHHHHH
Q 016144 267 ICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARM-VMAEQKF-----NAGPFYLGKASRPICLIAFLWICYTCS 339 (394)
Q Consensus 267 ls~i~~l~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (394)
++++..+.. ....+.++.+.+..++..++.|.+.+.... +|++.+. .+.+++.+ ..+...+.....+.....
T Consensus 348 i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i 426 (478)
T PF00324_consen 348 ISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSP-FGPMFAILGIAALIIILI 426 (478)
T ss_pred chheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhh-hhHHhHHHHHHHHHHHhh
Confidence 988876532 222357788888888888899998777544 3332121 12356655 555555555544444444
Q ss_pred HhccC
Q 016144 340 VFLLP 344 (394)
Q Consensus 340 ~~~~~ 344 (394)
...+.
T Consensus 427 ~~~~~ 431 (478)
T PF00324_consen 427 FLGFY 431 (478)
T ss_pred hhhhc
Confidence 44333
No 37
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.77 E-value=8.1e-17 Score=155.17 Aligned_cols=306 Identities=15% Similarity=0.086 Sum_probs=210.7
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCC----cccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 016144 3 TQAYAGSQTLQSIILLCTGTNKDGG----YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIM 78 (394)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~ 78 (394)
.++..+..++..+.....-+++++. ....+|..++.+..+..++..+++.|...++|..++..++..+.+....+.
T Consensus 161 ~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS 240 (945)
T KOG1288|consen 161 NCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPIS 240 (945)
T ss_pred cchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhhe
Confidence 3455666777777776654444422 346788999999999999999999999999999988877766665555554
Q ss_pred hhhccccccc----------ccccccceeec-----------CC-CCCCC-CchHHHHHHHHHhhHHhhcccchhhhhhh
Q 016144 79 LPLVALTTQS----------ASYVFTHFEMS-----------PE-ATGIS-SKPYAVILSFLVSQYSLYGYDSAAHLTEE 135 (394)
Q Consensus 79 ~~~~~~~~~~----------~~~~~~~~~~~-----------~~-~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E 135 (394)
.++..+.... .+..+.++ .+ +. ..+.. ..-..|-..+...+-+-+|+-+.+++++|
T Consensus 241 ~ifvgp~~~~ip~~~~p~~sn~t~~~~y-TG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgE 319 (945)
T KOG1288|consen 241 FIFVGPFKDPIPVPGDPILSNTTLFVHY-TGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGE 319 (945)
T ss_pred eEEeccccCCCCCCCCccccCcceeeee-cCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcc
Confidence 4443221111 00011111 00 00 00000 11125556666667788999999999999
Q ss_pred hcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHHHHHHH
Q 016144 136 TKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWG 215 (394)
Q Consensus 136 ~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 215 (394)
.|+|.|.+||+.+.++....+.|+++.+...... +...+.++-. ++.++ ...+.++.++.+-
T Consensus 320 Lk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~-~r~~Lq~dy~----------v~~~i-------sl~p~fi~iGi~s 381 (945)
T KOG1288|consen 320 LKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTV-PRTLLQNDYD----------VMMHI-------SLHPPFILIGILS 381 (945)
T ss_pred ccCccccCCccchHHHHHHHHHHHHHHHHhccCc-chHHhhhchh----------heeec-------cccchHHHHHHHH
Confidence 9999999999999999999999999888777666 4444433211 11111 1135667778888
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Q 016144 216 SFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVG 295 (394)
Q Consensus 216 ~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i 295 (394)
..+.+..+.+..++|++.++|||+.+|-...|+|...+.+.|++|+.+...+..+..+. +.++-+.++.++.+++
T Consensus 382 ttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~-----g~~N~iA~~it~~FLl 456 (945)
T KOG1288|consen 382 TTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLW-----GDINKIASMITMTFLL 456 (945)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHH-----hhHHHHHHHHHHHHHH
Confidence 88899999999999999999999999976788898878899999999999999887665 5778888999999999
Q ss_pred HHHHHHH-HHhhhccc-CCcCCCcccc-cchhHHHHHHHH
Q 016144 296 GYAVPIF-ARMVMAEQ-KFNAGPFYLG-KASRPICLIAFL 332 (394)
Q Consensus 296 ~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 332 (394)
+|....+ |+.+.... |+-+..||+- +....++.+..+
T Consensus 457 ty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~ 496 (945)
T KOG1288|consen 457 TYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSL 496 (945)
T ss_pred HHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHH
Confidence 9997755 55444322 3333336653 223334444333
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.74 E-value=6.3e-16 Score=149.17 Aligned_cols=265 Identities=11% Similarity=0.050 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
++.....+++.++...+|.+|.|..+|+|.+++..+++.++++++.+..+.+. ++ +.+... +..++ .++
T Consensus 112 ~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~---~~--~~~~~~--~~~~~----~~~ 180 (381)
T TIGR00837 112 WSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKG---DL--LLDVAL--DTSYW----PYI 180 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---HH--HhcCcc--ccccH----HHH
Confidence 34455667777888899999999999999999999999888877766543221 11 111100 11122 267
Q ss_pred HHHHHHhhHHhhccc-chhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 113 ILSFLVSQYSLYGYD-SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 113 ~~~~~~~~~af~G~e-~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
..++...+++| |+| ..+...+|.||++|++||++..+..++.++|++......+.. +.+++.+.........+..+.
T Consensus 181 ~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~-~~~~l~~~~~~~~~~~~l~~~ 258 (381)
T TIGR00837 181 LSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNL-PRSEFLPIIAKGGNLDGLVNA 258 (381)
T ss_pred HHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCCChHHHHHH
Confidence 77888888888 665 588889999877999999999999999999999999999999 777765321100001233344
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 271 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~ 271 (394)
..... |.++...++.++..++..++.+++..+.++. ++ +.+.+.+++++ |..+.++..+..+++
T Consensus 259 ~~~~~----~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~--~~~~~~~~~~~-~~~~~~~~~~~pl~~ 322 (381)
T TIGR00837 259 LQGVL----KSSAIELALELFSNFALASSFLGVTLGLFDY---------LA--DLFKFDDSKKG-RFKTGLLTFLPPLVF 322 (381)
T ss_pred HHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH--HHhCCCcccCC-CchhhhhhHHhHHHH
Confidence 44333 5666788888899999999999988887744 33 44444443433 567777777777666
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHH
Q 016144 272 GLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIA 330 (394)
Q Consensus 272 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (394)
.... +...+..+...+....++...++.......||+ +.+.+||.| .++....+.
T Consensus 323 a~~~--p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~-~~~~~~~~~-~~~~~~~~~ 377 (381)
T TIGR00837 323 ALFY--PEGFLYAIGYAGLAATIWAVIIPALLAWKARKK-FPNAGYRVW-GGNKLLLLV 377 (381)
T ss_pred HHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc-CChHHHHHH
Confidence 5432 223335555555555545555665543333332 223589998 666665543
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8e-16 Score=149.50 Aligned_cols=212 Identities=17% Similarity=0.099 Sum_probs=156.0
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
|-.-+.+-+-+.+|+-+.++.|++.|||+|++|.+.+.+.+....+|+...+.+..++ .-.-+.+.-+ +.+-.
T Consensus 412 FtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i-~~~vLRDKfG-----~sv~g- 484 (1075)
T KOG2082|consen 412 FTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACI-EGVVLRDKFG-----QSVGG- 484 (1075)
T ss_pred HHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhh-cchhhhhhhh-----hhccC-
Confidence 3333444456789999999999999999999999999999999999999888888877 3212211110 00000
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL 271 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~ 271 (394)
....+....+ -++++.++.++|++++.++++.++.|++++.|||+.+||.+.|+|.. +++.|.+|++++.+++...
T Consensus 485 -~lVva~laWP--sPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~g 560 (1075)
T KOG2082|consen 485 -NLVVATLAWP--SPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECG 560 (1075)
T ss_pred -cEEEEEecCC--CceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhh
Confidence 0001111112 46778899999999999999999999999999999999999999987 7899999999999999998
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-hcccCCcCCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 272 GLPILKVNVVFTAITSICTIGWVGGYAVPIF-ARMV-MAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 272 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
+++ .+.+.+..+.+++++.+|....+ |... ..|.|+.+..||.. -+.++++++..++...+..
T Consensus 561 ILi-----gslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyy--HW~LSflG~sLC~~iMF~~ 625 (1075)
T KOG2082|consen 561 ILI-----GSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYY--HWSLSFLGASLCLAIMFIS 625 (1075)
T ss_pred hee-----echhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhh--hhHHHHHHHHHHHHHHHHH
Confidence 776 45677777777888888886644 3222 22556655556663 5567777776666666554
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.58 E-value=5.1e-13 Score=126.59 Aligned_cols=245 Identities=13% Similarity=0.060 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
....+..+++..+..++|+++.|...+++++++-++++.++++++.++....+. .+....+ .. +...+
T Consensus 109 ~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~--~~~~~~~---------~~-~~~~f 176 (378)
T TIGR00796 109 LALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGP--ILAASGA---------YA-SQQAF 176 (378)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC--cCCcccc---------cc-cccHH
Confidence 445667778888888899999999999999999999999999999998763211 1110011 11 00257
Q ss_pred HHHHHHhhHHhh-------cccchhhhhh-hhcchhhchhHHHHHHH-HHHHHHHHHHHHHHHhhccChhhhhcCCCCcc
Q 016144 113 ILSFLVSQYSLY-------GYDSAAHLTE-ETKGADKTGPIAILSSI-GIISIFGWALILALCFSIQDFSYLYDKSNETA 183 (394)
Q Consensus 113 ~~~~~~~~~af~-------G~e~~~~~~~-E~k~p~k~ip~a~~~s~-~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (394)
..++.-..+.++ |+-.+..+.+ |.|||||+.|+++..++ ..+...|+...++..+.. +.+++.+.++
T Consensus 177 ~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~-~~~~~~~~~~--- 252 (378)
T TIGR00796 177 SKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGAT-SAAAAGDAVN--- 252 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHhhhcccCC---
Confidence 777777888888 9998888888 99999999999999998 677777777778877777 5454433211
Q ss_pred CCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHH
Q 016144 184 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 263 (394)
Q Consensus 184 ~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~ 263 (394)
+.+...+.....+|+. +..++.+.+.++|+++.++.+.+.+ ++|+|.++| .|+++.++
T Consensus 253 ~~~~l~~~a~~~~G~~-----G~~ll~i~v~lACLtT~iGli~~~a---------------~~f~~~~~k--~~y~~~v~ 310 (378)
T TIGR00796 253 GAQILSAYSQHLFGSL-----GSFLLGLIITLACLTTAVGLTTACS---------------EYFHKLVPK--LSYKTWVI 310 (378)
T ss_pred cHHHHHHHHHHHcchh-----HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcCC--CCHHHHHH
Confidence 0344555555566443 8999999999999999999998833 678888755 99999888
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccCCcCCCcccc
Q 016144 264 CAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR---MVMAEQKFNAGPFYLG 320 (394)
Q Consensus 264 ~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~ 320 (394)
...+....... ..++.+.+++.-...+.|-+..... +.+++.++.+++||.+
T Consensus 311 ~~~l~s~~ia~-----~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 311 VFTLFSFIVAN-----LGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred HHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehH
Confidence 77776665443 3457777776666666666554422 2444556668888875
No 41
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.28 E-value=8.6e-11 Score=113.10 Aligned_cols=261 Identities=18% Similarity=0.102 Sum_probs=177.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc--cccccceeecCCCCCCCCc
Q 016144 31 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSA--SYVFTHFEMSPEATGISSK 108 (394)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 108 (394)
+.+...-++.+..++...+|..|+++..|.|.++..+..+.+.-+.+..+......+.. .+..+.+.++ ...++. +
T Consensus 144 s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n-~~~~~~-~ 221 (643)
T KOG2083|consen 144 SKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVEN-LNPDID-P 221 (643)
T ss_pred cHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccC-CCCCcC-C
Confidence 33444458888888999999999999999999999888888888877766543211111 1111112010 112222 2
Q ss_pred hHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCC-Ccc-CCC
Q 016144 109 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN-ETA-GAF 186 (394)
Q Consensus 109 ~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 186 (394)
+.+++..+..-+-+.+|.-+.+++++..|||++++|++-..++.....+|.....-..... ..+.+.+... .+. -+.
T Consensus 222 ~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~-~r~~~~~~~~~~~~~c~~ 300 (643)
T KOG2083|consen 222 GYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATP-VRDALENWNDTSTKSCPI 300 (643)
T ss_pred CCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHH-HHHHhccchhhccCCCcc
Confidence 4577777777888999999999999999999999999999999999999988655444333 2222211110 000 000
Q ss_pred cHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHH
Q 016144 187 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 266 (394)
Q Consensus 187 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ 266 (394)
-..+. .+..... ......+..+...+..++..+.+.++.++++++.+|+..|--.++.|-.++.+.|.+...+...
T Consensus 301 gl~~~-~qv~smv---S~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~ 376 (643)
T KOG2083|consen 301 GLTNY-LQVMSMV---STFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFL 376 (643)
T ss_pred chHHH-HHHHHhH---hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHH
Confidence 01111 1111100 0123344566777888889999999999999999999999666888999999999999999999
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016144 267 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFA 303 (394)
Q Consensus 267 ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 303 (394)
.+..++.+ +..+.+..+...+...+|......
T Consensus 377 ~av~fi~i-----geln~iapiis~FfL~syAlinf~ 408 (643)
T KOG2083|consen 377 TAVSFIAI-----GELNIIAPIISNFFLLSYALINFS 408 (643)
T ss_pred hHheeEEe-----cccceeccchhhhhhhhhhccchh
Confidence 88877654 234555566677777888876543
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.09 E-value=1.7e-07 Score=90.44 Aligned_cols=183 Identities=11% Similarity=0.008 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHH
Q 016144 36 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILS 115 (394)
Q Consensus 36 ~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
....+.+..+...+-..|.|...|++..+...+++.++.+++.++-+.+..+ . ..... ...++ ...+.+
T Consensus 121 ~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~---L--~~~~~--~~~~~----~~~~~~ 189 (394)
T PF03222_consen 121 WLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSN---L--LDAPP--SPSDW----SYILPA 189 (394)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHH---h--hcccc--ccccH----HHHHHH
Confidence 3444455666677778899999999999999999888888777664332111 1 11101 22223 377889
Q ss_pred HHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHH
Q 016144 116 FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDA 195 (394)
Q Consensus 116 ~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 195 (394)
++..+++|.-...++.+....++-+|.+.|++..+..+..++|++...+..+.+ |.++..+-.+. +.+... ....
T Consensus 190 lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l-~~~~~~~~~~~---~~~~~~-~~~~ 264 (394)
T PF03222_consen 190 LPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSL-PREQFAEAIAQ---GGNVSA-LVSA 264 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHhc---CCChHH-HHHH
Confidence 999999999999999999999876788999999999999999999999988888 55544322110 112212 2233
Q ss_pred hccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016144 196 FHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 234 (394)
Q Consensus 196 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 234 (394)
+++..++++......+...++..++..+...+..+.+..
T Consensus 265 ~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 265 LANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343336677777778888888888888888887776644
No 43
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.05 E-value=7.5e-08 Score=92.24 Aligned_cols=179 Identities=11% Similarity=-0.008 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHhhhhhcccccccccccccceeecCCCCCCCCchHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGG-LVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.+...+.+.+++++...+..|+|..+|++.++..+++... +++..... +..+. ....+. .+.++. .
T Consensus 113 tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~---~~~~~--~~l~P~----~~~g~~----~ 179 (359)
T TIGR00912 113 TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAP---KLGNI--KNLLPV----LENGLS----P 179 (359)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccH--HHccCc----cccCcH----H
Confidence 3455667778888889999999999999999988877663 32222211 11111 112222 122333 5
Q ss_pred HHHHHH-HhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 112 VILSFL-VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 112 ~~~~~~-~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
...+.. ...|+|.|+|......+|.|||| +.||++..+..+++++|.+......... ++++..+.. .|..+
T Consensus 180 ~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~l-g~~~~~~~~------~P~~~ 251 (359)
T TIGR00912 180 ILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVF-GGNVTKNLY------WPTLE 251 (359)
T ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHhee-cHHHhhhhc------ccHHH
Confidence 666665 78899999999999999999965 5999999999999999999999988888 777765542 56666
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 233 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 233 (394)
.....--..+-.+ .-.++...-..+.+.....++++.++.+.
T Consensus 252 ~~~~i~~~~f~eR-~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 252 LIKLINIGDFIER-FELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443310000001 12333334445555666677777777643
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.85 E-value=7.7e-07 Score=85.73 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVIL 114 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (394)
..+.++.++++...++..|.|...|++.++...+++.++.+.+...-..+ .++....|...+ ....++.
T Consensus 122 ~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~--------~~~L~~~p~~~~---~~~~i~~ 190 (397)
T TIGR00814 122 RGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWN--------GANLTTFPSFNG---FLKTLWL 190 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------HHHHhcCCcccc---hHHHHHH
Confidence 44667777778889999999999999999999888777777666553221 111101001111 1247899
Q ss_pred HHHHhhHHhhcccchhhhh----hhhcch---hhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCc
Q 016144 115 SFLVSQYSLYGYDSAAHLT----EETKGA---DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV 187 (394)
Q Consensus 115 ~~~~~~~af~G~e~~~~~~----~E~k~p---~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (394)
++...+|+|.|+|..+.++ +|-||| +|..-|++..+..+..++|+...++..+.. +.++..+.... +.+
T Consensus 191 alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l-~~~~~~~a~~~---nis 266 (397)
T TIGR00814 191 TIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSL-SPAEAVAAKEQ---NIS 266 (397)
T ss_pred HHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHc---CcH
Confidence 9999999999999999998 666654 677899999999999999999999999999 66665432210 112
Q ss_pred HHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 016144 188 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSR 237 (394)
Q Consensus 188 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 237 (394)
. ...+.+....++...+..+...++...+..+...+....+..+-+
T Consensus 267 ---~-Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 267 ---I-LSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred ---H-HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2 222333335555666666666667777777777777776666653
No 45
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.76 E-value=1.4e-05 Score=76.91 Aligned_cols=253 Identities=9% Similarity=-0.035 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHH
Q 016144 38 MYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFL 117 (394)
Q Consensus 38 i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (394)
-.+.+.++...+-+.|.|...|++.++...+++.++.......-..+ .++. . + .++.+ . ....+++
T Consensus 123 ~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~--------~~~L-~--~-~~~~~-~-~~~~~iP 188 (403)
T PRK15132 123 GVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIH--------KVNL-L--T-LPLQQ-G-LALSAIP 188 (403)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHH-h--c-CCccc-c-HHHHHHH
Confidence 33444455555778899999999999999888887655554432211 1222 1 1 01111 1 4778888
Q ss_pred HhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhc
Q 016144 118 VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 197 (394)
Q Consensus 118 ~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 197 (394)
..+++|.=-..++.+....++-+|.+.|++..+..+..++|++...+..+.. +.+++.+...+ +.+..+. .+.+.
T Consensus 189 vl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l-~~~~~~~~~~~---~~~~~~~-l~~l~ 263 (403)
T PRK15132 189 VIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSI-DSTTFMGLLAN---HAGLNGL-LQALR 263 (403)
T ss_pred HHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHc---cCchHHH-HHHHH
Confidence 8899999888999999998877788999999999999999999999999999 55554221100 1111111 22233
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccc
Q 016144 198 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILK 277 (394)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~ 277 (394)
+..+.++...+..+...++...+..+...+..+.+..+-+.+. +++.+.. ...++.+-..++...+
T Consensus 264 ~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~----------~~~~r~~--~~~l~flppli~a~~~-- 329 (403)
T PRK15132 264 EVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN----------TVGGRLQ--TGLITFLPPLAFALFY-- 329 (403)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc----------cccCCch--hehhhHHHHHHHHHHh--
Confidence 3336667777778888888888888888887777766543211 1111211 2223333333333322
Q ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCcCCCcccccchhHH
Q 016144 278 VNVVFTAITSICTI-GWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPI 326 (394)
Q Consensus 278 ~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
.+.|....+.+.. ...+.+.+|.......|+++ ++++||.+ .++..
T Consensus 330 -P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~-~~~~y~v~-gg~~~ 376 (403)
T PRK15132 330 -PRGFVMALGYAGVALAVLALLLPSLLVWQSRKQN-PQAGYRVK-GGRPA 376 (403)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCccCC-CChHH
Confidence 2455555555443 33345556655333322222 14578876 45443
No 46
>PRK10483 tryptophan permease; Provisional
Probab=98.74 E-value=1.3e-05 Score=77.07 Aligned_cols=185 Identities=12% Similarity=-0.018 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHH
Q 016144 37 CMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSF 116 (394)
Q Consensus 37 ~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (394)
.-.+.+..+...+-+.|.|...|+++++...+++..+..+...+-..+. ........ . +...++ ..+.++
T Consensus 129 ~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~---~~L~~~~~-~--~~~~~~----~~~~al 198 (414)
T PRK10483 129 AAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQP---ATLFNVAE-S--NASYAP----YLLMTL 198 (414)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH---HHHhcccc-c--cchhHH----HHHHHH
Confidence 4556666778888888999999999999999988887666554332211 11100011 1 111122 567888
Q ss_pred HHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHh
Q 016144 117 LVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAF 196 (394)
Q Consensus 117 ~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 196 (394)
+..+.+|.=-..++.+.+..++-+|.+.|++..+..+..++|++...+..+.+ +.+++.+...+ +.+. +...+.+
T Consensus 199 Pvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l-~~~~~~~~~~~---~~ni-~~L~~~l 273 (414)
T PRK10483 199 PFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNI-PRPEFIGIAEK---GGNI-DVLVQAL 273 (414)
T ss_pred HHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc---CCCh-HHHHHHH
Confidence 88889998888899998888764458999999999999999999999999999 55554321000 1122 2333344
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016144 197 HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 236 (394)
Q Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 236 (394)
++..+.++...+..+...++...+..+...+....+..+-
T Consensus 274 ~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~ 313 (414)
T PRK10483 274 SGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF 313 (414)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443566666777777777777777777777776665543
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.65 E-value=3.6e-05 Score=73.96 Aligned_cols=184 Identities=8% Similarity=-0.118 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHH
Q 016144 38 MYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFL 117 (394)
Q Consensus 38 i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (394)
.++.+.++...+-+.|.|...|++.++...+++..+..+..+.-+.+. ... .+. . ...+.+......+.+++
T Consensus 129 ~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~---~~L--~~~-~--~~~~~~~~~~~i~~alP 200 (415)
T PRK09664 129 VGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFQVDY---SIL--RDA-T--STTAGTSYFPYIFMALP 200 (415)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccH---HHH--hcC-c--cccccchHHHHHHHHHH
Confidence 446777788888899999999999999988888877666655432221 111 110 0 01100000114667888
Q ss_pred HhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhc
Q 016144 118 VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 197 (394)
Q Consensus 118 ~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 197 (394)
..+.+|.=-..++.+..-.++-.|.++|++..+..+..++|++...++.+.+ |.+++.+.... +.+..+......+
T Consensus 201 Vl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~l-p~~~~~~~~~~---g~nv~~l~~s~~~ 276 (415)
T PRK09664 201 VCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNI-PRESFKAIISS---GGNVDSLVKSFLG 276 (415)
T ss_pred HHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc---CCCchHHHHHHHh
Confidence 8888888788888888888766678999999999999999999999999988 55554211100 1223333333333
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016144 198 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 234 (394)
Q Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 234 (394)
.. ..++...+..+...++...+..+...+....+..
T Consensus 277 ~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 277 TK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred hc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 4555666767777777777766666666665554
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.44 E-value=0.00042 Score=67.51 Aligned_cols=129 Identities=12% Similarity=-0.038 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
+.+.+..+++......+...|.+...|.+..+...+++.++++........+. ...... +..+ +.....+
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~-----~~l~~~----~~~~-~~~~~~~ 195 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNP-----ANLFAL----PSAS-QSFWKYL 195 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCH-----HHHhcc----cccc-hhhHHHH
Confidence 66677777777788889999999999999999999998888877766544221 111111 1111 1223488
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchhhc-hhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGADKT-GPIAILSSIGIISIFGWALILALCFSIQD 171 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~k~-ip~a~~~s~~~~~i~y~l~~~~~~~~~~~ 171 (394)
+.++....++|.+.-....+..|.|+++|. ++|++..+..+..++|+........+.++
T Consensus 196 ~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~ 255 (415)
T COG0814 196 LLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS 255 (415)
T ss_pred HHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999987776 99999999999999999999999999853
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.32 E-value=0.00041 Score=67.01 Aligned_cols=255 Identities=10% Similarity=0.009 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHH
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVI 113 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (394)
+..+.+++++.+...+-..|.|...|++.++...+++.++.+.+..+-+.+..+-.+...+.. ++.+-.......+
T Consensus 137 ~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~----~~~~~~~~~~~l~ 212 (443)
T PRK13629 137 NRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSL----SLTGHDGILVTVW 212 (443)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccc----cccccccHHHHHH
Confidence 466788888899999999999999999999999999998888877665433211110000000 0000000012577
Q ss_pred HHHHHhhHHhhcccchhhhhhh----h------cchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCcc
Q 016144 114 LSFLVSQYSLYGYDSAAHLTEE----T------KGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA 183 (394)
Q Consensus 114 ~~~~~~~~af~G~e~~~~~~~E----~------k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (394)
.+++...++|.=.-.++.++.. . ++.+|...|++..+..+..++|++..++..+.. +++++.+....
T Consensus 213 ~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsL-s~~~l~~a~~q-- 289 (443)
T PRK13629 213 LGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTL-SPQNMAEAKAQ-- 289 (443)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHh--
Confidence 7888888888655555555444 3 223577999999999999999999999999999 66665422110
Q ss_pred CCCcHHHHHHHHhccccCC-----chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC-CCCCcccccccccccCCCh
Q 016144 184 GAFVPAQILYDAFHGRYHN-----STGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD-KGIPFSSIWRQLHPKHKVP 257 (394)
Q Consensus 184 ~~~p~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d-~~lP~~~~f~~~~~~~~~P 257 (394)
+.+....+.+.++...+. ++...+..+...++...+..+...+..-.+..+.+. ...+ + =.|.|+| ..-
T Consensus 290 -n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~-~~~~~~~-~~~ 364 (443)
T PRK13629 290 -NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKG--D-KTKVSLG-KLN 364 (443)
T ss_pred -CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ccccCHH-HHH
Confidence 245444445555443222 445666666666777777777777777777777643 1111 1 0123311 122
Q ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 016144 258 SNAVWLCAAICIILGLPILKVNVVFTAITSI-CTIGWVGGYAVPIFA 303 (394)
Q Consensus 258 ~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~ 303 (394)
+...++..+.+-+.... +.+.++-+-++ +-+...+.|++|...
T Consensus 365 ~~~~~~~~~~~w~~~~~---np~il~~i~~~~gPiia~il~l~P~y~ 408 (443)
T PRK13629 365 TISMIFIMGSTWVVAYA---NPNILDLIEAMGAPIIASLLCLLPMYA 408 (443)
T ss_pred HHHHHHHHHHHHHHHHh---CccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22233333222222222 22344544434 446666777887654
No 50
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.08 E-value=0.00077 Score=65.08 Aligned_cols=232 Identities=16% Similarity=0.090 Sum_probs=124.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
++.+...+..+++..+..++.+..-|...++-.+++=+.++.++++++.++....+... +. -+.+.+++-..|+- .|
T Consensus 113 ~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~-~~-~~~y~~~~f~~Gf~-eG 189 (427)
T PF05525_consen 113 NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQ-AP-SGAYASNPFFKGFL-EG 189 (427)
T ss_pred ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-cc-chhhhhhHHHHHHH-HH
Confidence 45677888889999999999999999999999999999988888888888875332111 10 01110000001111 01
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcc---hhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCC
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKG---ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 186 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~---p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (394)
+.-+-++. ...|...-.-+-.....|| -+|..-++-..+...-.++|....+.-.... +...+.++ +++
T Consensus 190 Y~TMD~la--al~Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~---~~~~~~~~---g~~ 261 (427)
T PF05525_consen 190 YQTMDALA--ALAFGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSS---GSFPDDIN---GAE 261 (427)
T ss_pred HhhhhHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ccccCCCC---HHH
Confidence 11111122 2223332222222232333 3444555555555555666665444322211 11111111 012
Q ss_pred cHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHH-HHHHHH
Q 016144 187 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN-AVWLCA 265 (394)
Q Consensus 187 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~-al~~~~ 265 (394)
-+.+...+.+ |.. +..++.+.+.++|+.+..+-..+.+.. |.+..| +.+|. .+.+..
T Consensus 262 lL~~i~~~~~----G~~-G~~ll~iiv~lACLTTaIGL~~a~a~y---------------f~~~~~--kisY~~~v~i~~ 319 (427)
T PF05525_consen 262 LLSQIANHLF----GSA-GQILLGIIVFLACLTTAIGLISACAEY---------------FSELFP--KISYKVWVIIFT 319 (427)
T ss_pred HHHHHHHHHc----Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhc--ccChHHHHHHHH
Confidence 2334444444 333 889999999999999999999888865 444443 23333 333344
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016144 266 AICIILGLPILKVNVVFTAITSICTIGWVGGYAVP 300 (394)
Q Consensus 266 ~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~ 300 (394)
++|.++.-. .++.+.+++.=...+.|-+.
T Consensus 320 i~S~~ian~------Gl~~Ii~~s~PiL~~iYP~~ 348 (427)
T PF05525_consen 320 IFSFIIANL------GLDQIIKISVPILMFIYPVA 348 (427)
T ss_pred HHHHHHHHh------CHHHHHHHHHHHHHHHhHHH
Confidence 555544332 34566666555555555543
No 51
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.08 E-value=0.007 Score=57.33 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=122.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 31 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
+.+...+...++..+..++.+..-|...++-.+++=++++.++++.+..+....+. .+..-+++.+.|-..|+. +
T Consensus 116 ~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~--~~~a~~~y~~~pf~~Gfl-e-- 190 (431)
T COG1114 116 SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGP--ISAASGAYQSQPFSKGFL-E-- 190 (431)
T ss_pred cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC--cccccHHHHhChHHHHHh-c--
Confidence 55667788888899999999999999999999999999988888888766543221 111111110000112221 1
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
|+...=..+..+|...-.-+.-+...+++| +..|-.+.+-++..+.-.+.-....+..+..++.....+ +|++-+.+
T Consensus 191 GY~TMDaLAal~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~--nG~~IL~~ 267 (431)
T COG1114 191 GYLTMDALAALAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAA--NGGQILSA 267 (431)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhccccc--chHHHHHH
Confidence 111112233445555444444444445544 333333333333322222222222222211122111111 11233444
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.....+|.. +..++...+.++|+.+..+.+.+.+. +|+|.-||-.-..++. +..+++.+
T Consensus 268 ~s~~~fG~~-----G~~lL~~iv~lACLTTaiGLi~a~ae---------------fF~~~~p~~SY~~~v~-if~i~sfl 326 (431)
T COG1114 268 YSQHLFGSY-----GSILLGLIVFLACLTTAVGLIVACAE---------------FFSKLVPKLSYKTWVI-IFTLISFL 326 (431)
T ss_pred HHHHHhchh-----hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhcccccHHHHHH-HHHHHHHH
Confidence 444445443 78888899999999999888887774 5555554433333333 33334443
Q ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 016144 271 LGLPILKVNVVFTAITSICTIGWVGGYAVPI 301 (394)
Q Consensus 271 ~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 301 (394)
+.- ..++.+..++.=.....|-+.+
T Consensus 327 van------~GL~~Ii~isvPvL~~iYPiaI 351 (431)
T COG1114 327 VAN------LGLEQIIKISVPVLTAIYPIAI 351 (431)
T ss_pred HHH------hhHHHHHHHHHHHHHHHhHHHH
Confidence 322 3456666665555555555443
No 52
>PHA02764 hypothetical protein; Provisional
Probab=97.88 E-value=0.0012 Score=59.79 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=74.5
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
....++....-+|.=.|+..+.++|.||.+|....+-..|..++.++-+... ++. .
T Consensus 182 t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s---------y~n-------------~-- 237 (399)
T PHA02764 182 TLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS---------YSN-------------L-- 237 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh---------hhh-------------H--
Confidence 6666777777778889999999999999999988887777766555433311 100 0
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 258 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~ 258 (394)
.+....+.+..++-.....--.||++++|+-|+.+| ++|+|.|| ++|.
T Consensus 238 ----------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lp--e~f~k~~~--nv~~ 285 (399)
T PHA02764 238 ----------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLP--EKFSKINP--NVLL 285 (399)
T ss_pred ----------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhch--HHHhccCC--Ccee
Confidence 111122444555666666677899999999999999 99999983 6787
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.64 E-value=0.015 Score=56.61 Aligned_cols=143 Identities=10% Similarity=0.064 Sum_probs=87.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhhHHhhcccchh
Q 016144 51 TFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAA 130 (394)
Q Consensus 51 ~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 130 (394)
....+...++.....+..+....+..+.+....-+.+......... ++.+ ....++....|+|.|-....
T Consensus 179 lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~----~~~~------~~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 179 LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL----GTIP------TVFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC----CCCc------chhhhhhheeeeecCCeeee
Confidence 3344445556655556665555555555554321111111111111 1111 11567788889999999999
Q ss_pred hhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHH
Q 016144 131 HLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILL 210 (394)
Q Consensus 131 ~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~ 210 (394)
..-..+|+|+| ++|+...+..+++.+|+.+++.-....++. ..+ -+...+. .++|.....+
T Consensus 249 eIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~--~~~-------------~il~s~~---~p~~~~~~an 309 (437)
T KOG1303|consen 249 EIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDS--VPD-------------NILLSLQ---PPTWLIALAN 309 (437)
T ss_pred ehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccc--cch-------------hhhhccc---CchhHHHHHH
Confidence 99999999998 999999999999999999888776666321 101 1112221 3556677777
Q ss_pred HHHHHHHHHHHH
Q 016144 211 IVIWGSFFFGGL 222 (394)
Q Consensus 211 ~~~~~~~~~~~~ 222 (394)
+++.+-.+++.-
T Consensus 310 i~i~~h~i~s~~ 321 (437)
T KOG1303|consen 310 ILIVLHLIGSYQ 321 (437)
T ss_pred HHHHHHHhhhhh
Confidence 777666655443
No 54
>PRK11375 allantoin permease; Provisional
Probab=97.54 E-value=0.11 Score=51.69 Aligned_cols=116 Identities=7% Similarity=-0.093 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHH
Q 016144 36 LCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILS 115 (394)
Q Consensus 36 ~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
.+...++.++.+.+...|.|...+++.+...+..+..+...+..+...+ ........+- +.....+....+..+
T Consensus 159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g--~~~~~~~~~~----~~~~~~~~~~~~~~~ 232 (484)
T PRK11375 159 LITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG--IGPIFDYIPS----GIQKAENSGFLFLVV 232 (484)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhhccCcc----cccCCcchHHHHHHH
Confidence 3444455567777778899999998887777766655554444333321 1100000000 011111123455555
Q ss_pred HHHhhHHhh-cccchhhhhhhhcchhhchhHHHHHHHHHHHHHH
Q 016144 116 FLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFG 158 (394)
Q Consensus 116 ~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y 158 (394)
+...+=++. +.-..+.++...|++| +.-++...+..+...+.
T Consensus 233 i~~vig~~~~~~~~~~D~tRy~k~~~-~~~~~~~~g~~i~~~~~ 275 (484)
T PRK11375 233 INAVVAVWAAPAVSASDFTQNAHSFR-AQALGQTLGLVVAYILF 275 (484)
T ss_pred HHHHHHHHHHHHccccchhcccCChh-hhHHHHHHHHHHHHHHH
Confidence 433333333 4445778888888865 45556666665555443
No 55
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.53 E-value=0.016 Score=54.56 Aligned_cols=181 Identities=13% Similarity=0.046 Sum_probs=117.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
.++.+...+.+.+++.+......|.+..+|.........++.++.+..... ++.+. ....+. .+.+ .
T Consensus 108 lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~---~~~~~--~~l~P~----~~~g----~ 174 (320)
T PF03845_consen 108 LPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSI---PNIDW--DNLLPV----LESG----I 174 (320)
T ss_pred cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCH--HHeeCc----ccCC----h
Confidence 455567777788888999999999999999776666655555444333222 11111 112222 1223 3
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
..++.+.....+.|.|.|....+...+||||| ..|+...+...++++|.+......... +.+...+. ..|..
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vf-G~~~~~~~------~~P~~ 246 (320)
T PF03845_consen 175 KPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVF-GPELAKKL------TYPVL 246 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHhce------ecHHH
Confidence 37788888888999999999999999999765 789999999999999999888888888 65555443 25655
Q ss_pred HHHHHH-hccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016144 190 QILYDA-FHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 233 (394)
Q Consensus 190 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 233 (394)
+....+ +++ +-.+ .-.++...-..+.+......++++++.+.
T Consensus 247 ~~~~~i~i~~-fieR-ld~~~i~~w~~~~~~~~~~~~~~~~~~~~ 289 (320)
T PF03845_consen 247 ELARSIEIGD-FIER-LDSIFILIWIIGIFIKISLYLYAASEGLS 289 (320)
T ss_pred HHHHHhHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333 110 0011 22333334444555566677777777544
No 56
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.50 E-value=0.071 Score=51.63 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
..++......+..+.....+|.. |..+++.-......++.++.+.++......+.. +. .+. +.-.++.
T Consensus 174 ~~~~s~~~~i~~~~~~~lll~~I--r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~--~~~---~~~~~~~--- 241 (449)
T KOG1304|consen 174 PGVLSVRLYILIQLPPLLLLNLI--RNLKILSPFSLFANVFILVGLAIIMYYLVQDLP--PT--SDL---PAVTGWS--- 241 (449)
T ss_pred CCCccHHHHHHHHHHHHHHHHHH--HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--Cc--ccc---ccccchh---
Confidence 34444444444444444444443 334444444445555555555554443221111 11 000 0112233
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchh---HHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCC
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP---IAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF 186 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip---~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (394)
++...+..++|||.|...+--+=+|+|+|++ .| ..+-.+..+++++|...-..-....++ +..++
T Consensus 242 -~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~--~v~~s-------- 309 (449)
T KOG1304|consen 242 -GLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD--DVKGS-------- 309 (449)
T ss_pred -hhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccc--cccce--------
Confidence 6777888889999999999999999999986 67 888889999999998766544444421 11111
Q ss_pred cHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016144 187 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 234 (394)
Q Consensus 187 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 234 (394)
...+.+..+....+-++..++.+.+..-..+-.-+++..
T Consensus 310 ---------ITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 310 ---------ITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred ---------EEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 111112234566666777777766666666677777665
No 57
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.29 E-value=0.2 Score=48.70 Aligned_cols=186 Identities=11% Similarity=0.056 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHH
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAV 112 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
....+..+++..+..++..+.-|...++-++++=+.++.++++++.++....+. . +...+.+.+++-..|+- +|+.-
T Consensus 120 ~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~-~-~~~~~~y~~~~f~~Gf~-eGY~T 196 (439)
T PRK15433 120 LPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGS-I-STATEAYQNAAFSNGFV-NGYLT 196 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CCcchhhhhhhHHHHHH-hhHHH
Confidence 455678888889999999999999999999999888888888888888753221 1 00001110100111221 12222
Q ss_pred HHHHHHhhHHhhcccchhhhhhhhcchh---hchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 113 ILSFLVSQYSLYGYDSAAHLTEETKGAD---KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 113 ~~~~~~~~~af~G~e~~~~~~~E~k~p~---k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
+-++....|+ ..-.-+--....||+| |..-++-.++.....++|....+.-.... +...+.++ -.
T Consensus 197 MDalaal~Fg--~iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~---~~~~~~~~-------g~ 264 (439)
T PRK15433 197 MDTLGAMVFG--IVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA---SLVDQSAN-------GA 264 (439)
T ss_pred HHHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccccCCCc-------Hh
Confidence 3333332233 2222222233344433 33444555555555666665444332221 11211111 11
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 234 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 234 (394)
+.......+.+|+ ++..++.+.+.++++.+..+...+.++.+..
T Consensus 265 ~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 265 AILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222223333233 3899999999999999999999998876443
No 58
>PLN03074 auxin influx permease; Provisional
Probab=96.92 E-value=0.17 Score=50.31 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 169 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~ 169 (394)
..+..++....|+|.|.-....+-.|+|||+| .++....+...+...|+...+......
T Consensus 233 ~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~f 291 (473)
T PLN03074 233 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAF 291 (473)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHeeeeee
Confidence 35666777789999999999999999999975 888888888888888887666544444
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.83 E-value=0.21 Score=46.11 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=56.8
Q ss_pred hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCc
Q 016144 124 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 203 (394)
Q Consensus 124 ~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 203 (394)
........+++|+|+ +|+..+|-..+-++.+++-.+......... +++.+.| -|..++..+. + +
T Consensus 193 ~~~avLv~lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~---~~v~~~d------IP~l~i~~~~-----~-~ 256 (349)
T COG3949 193 VAVAVLVPLGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALY---DKVVNYD------IPLLTIAKNF-----S-P 256 (349)
T ss_pred hHhHhhhhhcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhc---chhhccC------CcHHHHHHhc-----c-H
Confidence 344556677899998 667888888888887777777677666555 3444442 5766664433 2 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 016144 204 TGAIILLIVIWGSFFFGGLSVTTS 227 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
....++.+..++....+..+.+++
T Consensus 257 ~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 257 LIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666677777777666655
No 60
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.76 E-value=0.63 Score=45.62 Aligned_cols=152 Identities=10% Similarity=-0.032 Sum_probs=87.5
Q ss_pred hhhhHHHHHHHHHHHhccCCCCCCcc-cc--------hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016144 4 QAYAGSQTLQSIILLCTGTNKDGGYF-AP--------KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLV 74 (394)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~ 74 (394)
.+|.++..+..+..... |.+. ++ +....+...++-++...+-..|.+...|++.+-..+..+..+.
T Consensus 136 qty~Gg~av~llL~~i~-----~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~g 210 (497)
T COG1953 136 QTYAGGLAVNLLLGSIF-----PSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLG 210 (497)
T ss_pred HHHHhHHHHHHHHHHhc-----cccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHH
Confidence 46777777777776544 3321 11 2234444555566677777889999999999999988888888
Q ss_pred HHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhh-HHhhcccchhhhhhhhcchhhchhHHHHHHHHH
Q 016144 75 IIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQ-YSLYGYDSAAHLTEETKGADKTGPIAILSSIGI 153 (394)
Q Consensus 75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~ 153 (394)
+.+-...++++.+......... . ..++ ..+.++.++.... +-=+..-..+.++.+.|+|| +.-++...++.+
T Consensus 211 l~Iw~~~~a~g~~~~~~~p~~~-~--~~~~---~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~-~~~~gq~~gLPv 283 (497)
T COG1953 211 LAIWALVKAGGSSILGELPAGT-V--SGSN---SSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQK-AQIWGQLVGLPV 283 (497)
T ss_pred HHHHHHHhcCCcCccccCCCCC-C--Ccch---hHHHHHHHHHHHHHHHHHHhcCCchhhcccCChh-hhhhccchhhhH
Confidence 8887777665432221111111 0 1111 1223433332111 11234445678888888854 455566777777
Q ss_pred HHHHHHHHHHHHHh
Q 016144 154 ISIFGWALILALCF 167 (394)
Q Consensus 154 ~~i~y~l~~~~~~~ 167 (394)
...+..+..+....
T Consensus 284 ~~~l~~ligvv~ts 297 (497)
T COG1953 284 NFALFSLIGVVVTS 297 (497)
T ss_pred HHHHHHHHHhhHHH
Confidence 66666555544443
No 61
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.75 Score=44.82 Aligned_cols=97 Identities=8% Similarity=0.031 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHH
Q 016144 32 KWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 32 ~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
+.+.....+++-+++++..++|.|...+++.+......+..+......+-... . .+.. .++..+.+. +
T Consensus 127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~-~------~~~~-~~~~~~~~~----~ 194 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKG-G------LDAL-WVKGPTSPL----S 194 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c------ccee-eccCCCcch----h
Confidence 33444444555667888888999999999998888776665555444332111 1 0111 101223333 5
Q ss_pred HHHHHHHhhHHhhccc-chhhhhhhhcchh
Q 016144 112 VILSFLVSQYSLYGYD-SAAHLTEETKGAD 140 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e-~~~~~~~E~k~p~ 140 (394)
+..++..++=.+..|- .++..+.-.|+||
T Consensus 195 fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 195 FLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 6666655554454443 3466666666655
No 62
>PTZ00206 amino acid transporter; Provisional
Probab=96.63 E-value=0.48 Score=47.12 Aligned_cols=59 Identities=8% Similarity=-0.104 Sum_probs=50.4
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcch-hhchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGA-DKTGPIAILSSIGIISIFGWALILALCFSI 169 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p-~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~ 169 (394)
....++....++|.+-......-+|+||| +|+..+....+..++.++|.+..+.-....
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~f 316 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDF 316 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 57788899999999999999999999986 467888999999999999998777655555
No 63
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=96.41 E-value=0.00044 Score=67.37 Aligned_cols=61 Identities=11% Similarity=0.002 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhHHhhcccchhhhhhhhcchhh--chhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016144 109 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADK--TGPIAILSSIGIISIFGWALILALCFSI 169 (394)
Q Consensus 109 ~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k--~ip~a~~~s~~~~~i~y~l~~~~~~~~~ 169 (394)
..++..++....++|.+........+|+|+|+| ++.|....+..++.++|.+.........
T Consensus 191 ~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 253 (409)
T PF01490_consen 191 FSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAF 253 (409)
T ss_pred hhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhccccee
Confidence 348888999999999999999999999999875 4669999999999999999777655554
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.37 E-value=1.2 Score=44.24 Aligned_cols=90 Identities=14% Similarity=-0.026 Sum_probs=47.7
Q ss_pred hhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHH
Q 016144 130 AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 209 (394)
Q Consensus 130 ~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~ 209 (394)
....-..|| +|+..|+...+.+....++....+.-.....-..+..+.| ..+.....+. -+++..-++
T Consensus 256 ~~R~~aak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d------~~~p~~~~~~-----lp~~~~gl~ 323 (471)
T TIGR02119 256 AVRCMSYKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPD------KVIPLLAIKV-----LPPILAGIF 323 (471)
T ss_pred HHHHHhcCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc------chHHHHHHHH-----chHHHHHHH
Confidence 334555676 5678899888877666655443332211110011121122 1232333332 345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 016144 210 LIVIWGSFFFGGLSVTTSAARV 231 (394)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~sR~ 231 (394)
..+++.+..++..+.+.+.+-.
T Consensus 324 ~a~llaA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 324 LAAPMAAIMSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777776654
No 65
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.18 E-value=1.6 Score=43.61 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---cccccccccceeecCCCCCCCCchHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT---TQSASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
...+++++++..+.+.-+|....++.---...+=++.+..+.+..+...+. .-++.+..+-+ . +.++. +
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~-~---~~~~~----~ 203 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFF-I---RNGWI----G 203 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHH-H---HcCCc----h
Confidence 456778888888999999987766653333333333333332322222111 00111222222 1 11111 1
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
+..+...+.+.+|-|+.-. +-=+-.||++.++-..-+.-+.++--+.+-+....- ++. ..+-
T Consensus 204 -~~~LG~V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~--p~~-------------~~np 265 (534)
T PF02705_consen 204 -FFVLGAVFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSH--PEA-------------VSNP 265 (534)
T ss_pred -hhhcchHHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcC--cch-------------hhhH
Confidence 2244456678999996543 222335677776655533333332222232222222 111 1122
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccC--C--ChHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH--K--VPSNAVWLCAAI 267 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~--~--~P~~al~~~~~l 267 (394)
++... +.|..+.+.+...++..-+.=+.+.++--+....-+-|.+|.- ...+++++. | .|.. .|+..+.
T Consensus 266 Ff~~~-----P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYIP~v-Nw~L~i~ 338 (534)
T PF02705_consen 266 FFLLI-----PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRL-KIVHTSEKEEGQIYIPEV-NWLLMIG 338 (534)
T ss_pred HHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce-EEEECCcccCCcEechHH-HHHHHHH
Confidence 33332 2235555445544444444444555555566667788999932 223444333 2 4432 3334444
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 268 CIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 268 s~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
++.+.+ .+.+.+.......++....+
T Consensus 339 ~i~vvl-~F~~S~~la~AYGiAVt~tM 364 (534)
T PF02705_consen 339 VIAVVL-GFRSSSNLAAAYGIAVTGTM 364 (534)
T ss_pred HHhhhe-EECChHHHHHHHHHHHHHHH
Confidence 443333 44555666666666555444
No 66
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.88 E-value=1.9 Score=41.86 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 32 KWLFLCMYIGLTIIWAVLNTFALEV-IAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 32 ~~~~~~i~~~~~~~~~~in~~g~~~-~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
++.....-+.++.+..++-.+|++. ..|.+.++.=+-.+.++++.+..+...+. .... +.+.. |+-+... +..
T Consensus 141 ~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA--~~G~--~f~l~-PD~s~l~-~~~ 214 (439)
T COG0733 141 PGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGA--MEGL--KFLFK-PDFSKLT-DPK 214 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccH--HHHH--HHHhc-CCHHHcC-chh
Confidence 5555556677777888888899987 77788777666666655555555442111 1111 11101 1111121 133
Q ss_pred HHHHHHHHhhHHhh-cccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhcc--ChhhhhcCCCCccCCCc
Q 016144 111 AVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ--DFSYLYDKSNETAGAFV 187 (394)
Q Consensus 111 ~~~~~~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~--~~~~~~~~~~~~~~~~p 187 (394)
.++.++.+++|+.. |+..--.+++=.++ |.|+++.-......-..+-++.-+.+.-... ..+ .++ |.-
T Consensus 215 v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~----~~~----Gpg 285 (439)
T COG0733 215 VWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD----ASQ----GPG 285 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCC----CCe
Confidence 77888899999985 88877777777765 7889988777666665555543333322220 111 111 111
Q ss_pred -HHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC
Q 016144 188 -PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRD 238 (394)
Q Consensus 188 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 238 (394)
....+-.++++. + ...++.+..+++...+.++...+.-..+-+.-.|
T Consensus 286 L~Fi~LP~if~~m-p---~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~ 333 (439)
T COG0733 286 LVFIVLPAVFNQM-P---LGTLFGILFFLLLLFAALTSAISMLEVLVAALID 333 (439)
T ss_pred eehhHHHHHHHhC-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223334332 2 4555556655555555555555555555543333
No 67
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=95.68 E-value=1.3 Score=43.03 Aligned_cols=191 Identities=14% Similarity=0.046 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--ccccceeecCCCCCCCCc-hH
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSAS--YVFTHFEMSPEATGISSK-PY 110 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 110 (394)
+.+..++++..+..++-.-|+|..+++...+.=+..+.-++.++..+...-+.-+.. ..+....+ ++.-...- +.
T Consensus 138 ~~~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~--~~aa~GG~~G~ 215 (416)
T PF01235_consen 138 PPWITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFT--PKAAFGGFAGS 215 (416)
T ss_pred cHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcC--CccchhhHHHH
Confidence 345566777777788888899988887776655554444444443333211111111 11221102 22222100 11
Q ss_pred HHH----HHHHHhhHHh---hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCcc
Q 016144 111 AVI----LSFLVSQYSL---YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA 183 (394)
Q Consensus 111 ~~~----~~~~~~~~af---~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (394)
.+. .++.=..|+= .|....++.+.|+++|.|+=-.++.-..+=..++-.+..+.+...- .++...+
T Consensus 216 ~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~------ 288 (416)
T PF01235_consen 216 TIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSG------ 288 (416)
T ss_pred HHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCc------
Confidence 111 1111112222 3555667777788999887665554443322222222222222221 2211111
Q ss_pred CCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016144 184 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 236 (394)
Q Consensus 184 ~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 236 (394)
..-.+.....+.+..| +++..++.+++++..+++..++.+..-|-+.-+.
T Consensus 289 --~~g~~l~~~Af~~~~g-~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 289 --LEGAALTQAAFSTVLG-SWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred --chHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122334445554434 5688899999999999999999998888776654
No 68
>PLN00149 potassium transporter; Provisional
Probab=95.37 E-value=2.1 Score=44.60 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----ccccccccceeecCCCCCCCCc
Q 016144 33 WLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT----QSASYVFTHFEMSPEATGISSK 108 (394)
Q Consensus 33 ~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 108 (394)
+....+++++++..+.+.-+|....+++-.-...+=++.+..+.+.-+...++. -++.+...-+ ...+..+|.
T Consensus 196 ~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~-~~~~~~g~~-- 272 (779)
T PLN00149 196 YVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFL-KKTQRGGWM-- 272 (779)
T ss_pred ceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHH-HHCCCceeE--
Confidence 444568889999999999999876665543333333333333333333322110 1122222222 101223343
Q ss_pred hHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcH
Q 016144 109 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 188 (394)
Q Consensus 109 ~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (394)
.+.-.+.+.+|-|+. +++==+-.+|.+-+|-..-+.-+.++--+.+-++..-- ++...+- .+|+
T Consensus 273 ------~LGgV~L~iTG~EAL--yADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~--p~~~~~~------~~pF 336 (779)
T PLN00149 273 ------SLGGILLCITGSEAM--FADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKH--HVIESDY------RIGF 336 (779)
T ss_pred ------eecchhhcccchhhh--hhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcC--cchhccc------cCcH
Confidence 333445788999965 33333446677776655444444333333343333222 1111111 1243
Q ss_pred HHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCC----ChHHHHHHH
Q 016144 189 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK----VPSNAVWLC 264 (394)
Q Consensus 189 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~----~P~~al~~~ 264 (394)
+.. .+++..+-+.+...++.+-+.=+.+.++-.+....-+-|.+|.-| ..+++++.. .|. ..|+.
T Consensus 337 ----y~~-----iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvk-IvhTS~~~~GQIYIP~-vNw~L 405 (779)
T PLN00149 337 ----YVS-----VPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVK-IVHTSSKIHGQIYIPE-INWTL 405 (779)
T ss_pred ----HHh-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-EEecCcccCCceeeHH-HHHHH
Confidence 333 233455555555555555444455555556666777789999332 233343332 443 34444
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 265 AAICIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 265 ~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
.+.++++.+ .+.+.+.+..-..++....+
T Consensus 406 mv~~i~vv~-~F~~s~~l~~AYGiAV~~vM 434 (779)
T PLN00149 406 MLLCLAVTV-GFRDTKRLGNASGLAVITVM 434 (779)
T ss_pred HHHHHhhee-EecChHHHHHHhhhhhehHH
Confidence 555554444 33444555555555444333
No 69
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.29 E-value=3.1 Score=40.44 Aligned_cols=28 Identities=0% Similarity=0.037 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016144 56 VIAFIDIISMWWQVAGGLVIIIMLPLVA 83 (394)
Q Consensus 56 ~~~~~~~~~~~~~i~~l~~~~i~~~~~~ 83 (394)
...+++.+...+.+...+.+....+...
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~~~ 172 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFVAP 172 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4556777666666666666666555543
No 70
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.28 E-value=2.3 Score=43.83 Aligned_cols=227 Identities=12% Similarity=-0.014 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccc---cccccccccceeecCCCCCCCCch
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV-ALT---TQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
....+++++++..+.+.-+|....++.-.-...+=++.+..+.+..+.. .+. .-++.+...-+ ...+..+|-
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~-~~~~~~~~~--- 242 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFF-IEYGTVGWV--- 242 (688)
T ss_pred eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHH-HHCCCceee---
Confidence 3466788888899999999987666654433333333333333333332 111 00112222222 100112222
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
.+...+.+.+|-|+.-. +-=+-.||++-+|-..-+.-+.++--+.+-+....- ++.. ..|+
T Consensus 243 -----~LG~V~L~iTGaEALyA--DmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~--p~~~---------~NpF- 303 (688)
T TIGR00794 243 -----SLGGVVLSITGVEAMFA--DLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKH--PEAI---------KNPF- 303 (688)
T ss_pred -----eccchhheeccHhhhhc--ccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcC--cchh---------cCcH-
Confidence 34445678899996532 323335666666655333333332222233322221 1111 1233
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccC--C--ChHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH--K--VPSNAVWLCA 265 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~--~--~P~~al~~~~ 265 (394)
+.. -++|..+.+.++..++..-+.=+.+.++-.+....-+-|.+|.- ...+++++. | .|.. .|+..
T Consensus 304 ---f~~-----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYiP~v-Nw~Lm 373 (688)
T TIGR00794 304 ---FLS-----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRV-KIIHTSEKYHGQIYIPFV-NWLLM 373 (688)
T ss_pred ---HHh-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCCccCCceeeHHH-HHHHH
Confidence 333 23445555555555554444445555555666677788999932 233444332 2 3432 33334
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 266 AICIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 266 ~ls~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
+.++++.+ .+.+.+.+..-..++....+
T Consensus 374 v~~i~vvl-~F~~S~~la~AYGiaVt~tM 401 (688)
T TIGR00794 374 LGVIAVTA-GFRDTNNLGAAYGIAVTGTF 401 (688)
T ss_pred HHHHheeE-EecChHHHHHHhhhhhhhhh
Confidence 44443333 34455555555555444443
No 71
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.27 E-value=2.9 Score=39.95 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016144 194 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 236 (394)
Q Consensus 194 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 236 (394)
+.+.+..|.++...++.++.+.+.+++......+.++.+.+.-
T Consensus 243 ~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 243 QALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 3344443556689999999999999999988888888766544
No 72
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.20 E-value=1.3 Score=46.03 Aligned_cols=226 Identities=11% Similarity=0.068 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----ccccccccceeecCCCCCCCCchH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT----QSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
...+++++++..+.+.-+|....++.-.-...+=++.+..+.+.-+...++. -++.+...-+ ...+..+|-
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff-~~~~~~g~~---- 288 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFF-IRNGRQGWE---- 288 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHH-HhCCCceEE----
Confidence 4567888888999999999876665443333333333333333333322110 1122222222 101223332
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
.+...+.+.+|-|+.- ++==+-.+|.+-.|-..-+.-+.++--+.+-+...-- ++.. .+|
T Consensus 289 ----~LG~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~--p~~~---------~np--- 348 (779)
T PLN00150 289 ----SLGGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKH--MEDV---------NDP--- 348 (779)
T ss_pred ----Eecceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcC--cccc---------cCc---
Confidence 3334457889999652 3333335666666654333333333222233332221 1111 123
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCC----ChHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK----VPSNAVWLCAA 266 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~----~P~~al~~~~~ 266 (394)
++.. .+++..+.+.+...++.+-+.=+.+.++-.+....-+-|.+|.-| ..+++++.. .|. ..|+..+
T Consensus 349 -Ff~~-----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvk-I~hTS~~~~GQIYIP~-vNw~Lmv 420 (779)
T PLN00150 349 -FYRS-----LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVK-IVHTSNKVHGQVYIPE-INWILMV 420 (779)
T ss_pred -HHHh-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-EEecCcccCCceeeHH-HHHHHHH
Confidence 3333 233455555555555555444455555656666777789999322 233343333 443 3444445
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 267 ICIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 267 ls~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
.++++.+ .+.+.+.+..-..++....+
T Consensus 421 ~~i~vv~-~F~~s~~l~~AYGiAV~~vM 447 (779)
T PLN00150 421 LCLVITA-GFRDTDEIGNAYGIAVVGVM 447 (779)
T ss_pred HHHhheE-EecChHHHHHHhhhheehhh
Confidence 5554444 34455555555555444333
No 73
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=95.19 E-value=3.8 Score=40.91 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=43.7
Q ss_pred hhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHHHHHH
Q 016144 135 ETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIW 214 (394)
Q Consensus 135 E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~ 214 (394)
..|| +|+..|+...+......++....+.-.....-.++..+.+ ........+. -+++..-++..+++
T Consensus 262 aaks-~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~------~~~p~l~~~~-----lp~~l~gl~~a~~~ 329 (483)
T PRK09442 262 SYKD-SKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPD------KVIPTLMLKV-----LPPFAAGIFLAAPM 329 (483)
T ss_pred HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc------chHHHHHHHH-----cCHHHHHHHHHHHH
Confidence 3566 4567888887776666655543332111110001111111 1222333332 45566777777777
Q ss_pred HHHHHHHHHHHHHHhHH
Q 016144 215 GSFFFGGLSVTTSAARV 231 (394)
Q Consensus 215 ~~~~~~~~~~~~~~sR~ 231 (394)
-+..++..+.+.+.+-.
T Consensus 330 aA~mST~~s~l~~~ss~ 346 (483)
T PRK09442 330 AAIMSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666553
No 74
>PLN00148 potassium transporter; Provisional
Probab=95.12 E-value=1.4 Score=45.74 Aligned_cols=224 Identities=10% Similarity=0.041 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----ccccccccceeecCCCCCCCCchH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT----QSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
...+++++++..+.+.-+|....+++-.-...+=++.+..+.+..+...++. -++.+...-+ ...+..+|.
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff-~~~~~~g~~---- 271 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFF-RVTGKDGWI---- 271 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHH-HhCCCceEE----
Confidence 4567888888999999999876666544333333333333333333332110 1122222222 111223343
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
.+...+.+.+|-|+. +++==+-.+|.+-+|-..-+.-+.++--+.+-++..-- +++. .+|
T Consensus 272 ----~LGgV~L~iTGaEAL--yADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~--p~~~---------~np--- 331 (785)
T PLN00148 272 ----SLGGILLSITGTEAM--FADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKN--IPSI---------PNS--- 331 (785)
T ss_pred ----eecchheeccchhhh--hhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcC--cccc---------cCc---
Confidence 333445788999965 33333345666766654443333333333333333222 1111 123
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCC----ChHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK----VPSNAVWLCAA 266 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~----~P~~al~~~~~ 266 (394)
++.. .+++..+-+.+...++.+-+.=+.+.++--+....-+-|.+|.-| ..+++++.. .|. ..|+..+
T Consensus 332 -Ff~~-----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvk-IvhTS~~~~GQIYIP~-vNw~Lmv 403 (785)
T PLN00148 332 -FYDS-----IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVK-VVHTSKHIYGQIYIPE-INWILMI 403 (785)
T ss_pred -HHHh-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCce-EEecCCccCCceeeHH-HHHHHHH
Confidence 3333 233355555555555554444455555556666677789999332 233343432 443 3444445
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHH
Q 016144 267 ICIILGLPILKVNVVFTAITSICTIG 292 (394)
Q Consensus 267 ls~i~~l~~~~~~~~~~~l~~~~~~~ 292 (394)
.++++.+. +.+.+.+..-..++...
T Consensus 404 ~~i~vv~~-F~~s~~la~AYGiAV~~ 428 (785)
T PLN00148 404 LTLAVTIG-FRDTTLIGNAYGLACMT 428 (785)
T ss_pred HHHHhhee-eccchhHHHhhhhheee
Confidence 55544443 34444555555544433
No 75
>PLN00151 potassium transporter; Provisional
Probab=95.02 E-value=1.8 Score=45.10 Aligned_cols=227 Identities=10% Similarity=0.053 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccc----ccccccccceeecCCCCCCCCch
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT----QSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
....+++++++..+.+.-+|....+++-.-...+=++.+..+.+.-++..++. -++.+...-+ ...+..+|.
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff-~~~~~~gw~--- 348 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFF-KRNSTKAWS--- 348 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHH-HhCCCceEE---
Confidence 34568888889999999999876666543333333333333333333322110 1122222222 111223343
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
.+.-.+.+.+|-|+.- |+==+-.+|.+-.|-..-+.-+.++--+.+-++..-- ++.. ..|
T Consensus 349 -----~LGgVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~--p~~~---------~np-- 408 (852)
T PLN00151 349 -----ALGGCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKN--PDSA---------EQI-- 408 (852)
T ss_pred -----Eecceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcC--cccc---------cCc--
Confidence 3334457889999652 3333335666666654433333333333333333222 1111 123
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCC----ChHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK----VPSNAVWLCA 265 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~----~P~~al~~~~ 265 (394)
++.. .+++..+-+.+...++.+-+.=+.+.++--+....-+-|.+|.-|. .+++++.. .|. ..|+..
T Consensus 409 --Fy~s-----vP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkI-vHTS~~~~GQIYIP~-vNw~Lm 479 (852)
T PLN00151 409 --FFSS-----VPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKI-IHTSRKFMGQIYIPV-INWFLL 479 (852)
T ss_pred --HHHh-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceE-EeCCCccCCceeeHH-HHHHHH
Confidence 3333 2333555555555555444444555555566666677899993322 33343432 443 344455
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 266 AICIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 266 ~ls~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
+.++++.+ .+.+.+.+..-..++....+
T Consensus 480 v~~i~v~l-~F~~s~~l~~AYGiAV~~vM 507 (852)
T PLN00151 480 VMCLVVVC-SFRSITDIGNAYGIAEVGVM 507 (852)
T ss_pred HHHHhhee-eecCHHHHHHHhhhhhhhhh
Confidence 55555444 33444555555555444333
No 76
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.48 E-value=0.7 Score=46.69 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhhH
Q 016144 42 LTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQY 121 (394)
Q Consensus 42 ~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (394)
...+....-..|+|..+|+......+-.+.++++.+.++...+..+ ....+.. |+-+... +......++..++|
T Consensus 187 ~w~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~----Gl~~~~~-pd~~~l~-~~~vW~~A~~Q~ff 260 (523)
T PF00209_consen 187 VWLIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASE----GLKFLFT-PDWSKLL-DPKVWIAALGQVFF 260 (523)
T ss_dssp HHHHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHH----HHHHHHS-B-TTGTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCC----ceEEEec-CCcchhh-HHHHHHHHHHHHhh
Confidence 3344555566799998888776665555555555554443211111 1111101 1222222 23466788889999
Q ss_pred Hhh-cccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHH
Q 016144 122 SLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 160 (394)
Q Consensus 122 af~-G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l 160 (394)
+.. |+.....++.-.|+ ++|++|........-..+.++
T Consensus 261 sl~ig~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 261 SLSIGFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp HTTTTSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcceEEEEcCcCCC-CccccccceEEEcCchhhhHh
Confidence 985 88888888888876 778888766665555555444
No 77
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=94.23 E-value=0.19 Score=33.01 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=38.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhcccee
Q 016144 317 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW 379 (394)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
||.| +.|.+..+++...+++....- ..+++-+++++.++.+.|+.|++||
T Consensus 1 F~vP-~vP~~P~~si~~ni~Lm~~L~------------~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVP-LVPFLPALSILINIYLMAQLS------------ALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhh------------HhHHHHHHHHHHHHHHHHHheeeec
Confidence 4566 777888888888877765431 3356888999999999999998876
No 78
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=94.22 E-value=5.8 Score=38.57 Aligned_cols=87 Identities=16% Similarity=0.022 Sum_probs=45.8
Q ss_pred hcchhhchhHHHHHHHHHHHHHHHHHHHHHHhh---ccC-hhhhhc---CCCCccCCCcHHHHHHHHhccccCCchhhHH
Q 016144 136 TKGADKTGPIAILSSIGIISIFGWALILALCFS---IQD-FSYLYD---KSNETAGAFVPAQILYDAFHGRYHNSTGAII 208 (394)
Q Consensus 136 ~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~---~~~-~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 208 (394)
.|| +|+..|+...+.....+++.+..+.-... .++ ..+... .+. ...+.....+. -+++..-+
T Consensus 229 ~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~----~~~~p~~~~~~-----lp~~l~gl 298 (407)
T TIGR00813 229 AKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNS----DQAYPLLVQEL-----MPPGLAGL 298 (407)
T ss_pred cCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCCh----hhHHHHHHHHH-----cCcchHHH
Confidence 355 56788998888776666654433222211 111 011110 111 11122222222 45557777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 016144 209 LLIVIWGSFFFGGLSVTTSAARVV 232 (394)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~sR~l 232 (394)
+..+++.+..++..+.+.+.+-.+
T Consensus 299 ~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 299 FLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Confidence 777777778888888877776654
No 79
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=94.10 E-value=3.3 Score=41.98 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---cccccccccceeecCCCCCCCCchHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALT---TQSASYVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (394)
...+++++++..+.+.-+|....++.---...+=++.+.+..+..+...+. .-++.+...-+ ...+..+|
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~-~~~~~~gf------ 215 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFF-LEYKTVSF------ 215 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHH-HhCCCceE------
Confidence 466888888889999999987666654433333333333333333332111 00111222222 10011222
Q ss_pred HHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHH
Q 016144 112 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI 191 (394)
Q Consensus 112 ~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (394)
..+...+.+.+|-|+.- ++-=+-.||++.+|-..-+.-+.++--+.+-+....- ++.. .+|+
T Consensus 216 --~~LG~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~--p~~~---------~NpF--- 277 (622)
T PRK10745 216 --FALGAVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKN--PEAI---------KNPF--- 277 (622)
T ss_pred --EEecceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcC--chhh---------cCcH---
Confidence 23344567889999653 3333345677777665444333332222233322211 1111 1243
Q ss_pred HHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccC--C--ChHHHHHHHHHH
Q 016144 192 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH--K--VPSNAVWLCAAI 267 (394)
Q Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~--~--~P~~al~~~~~l 267 (394)
+.. -++|..+.+.++..++..-+.=+.+.++-.+....-+-|.+|.- ...+++++. | .|.. .|+..+.
T Consensus 278 -f~~-----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl-~I~hTS~~~~GQIYIP~v-Nw~Lmv~ 349 (622)
T PRK10745 278 -FLL-----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPM-RIIHTSEMESGQIYIPFV-NWLLYVA 349 (622)
T ss_pred -HHh-----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCc-eEEeCCCccCCceeeHHH-HHHHHHH
Confidence 333 23345555555544444444444455555556666778999932 223334332 2 3432 3333333
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHHHH
Q 016144 268 CIILGLPILKVNVVFTAITSICTIGWV 294 (394)
Q Consensus 268 s~i~~l~~~~~~~~~~~l~~~~~~~~~ 294 (394)
++.+.+ .+.+.+....-..++....+
T Consensus 350 ~i~~vl-~F~sS~~La~AYGiAVt~tM 375 (622)
T PRK10745 350 VVIVIV-SFEHSSNLAAAYGIAVTGTM 375 (622)
T ss_pred HHeeEE-EecCchHHHHHhhhhheeHh
Confidence 333333 34444555555555443333
No 80
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=93.70 E-value=7.4 Score=37.92 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=50.4
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchh-hchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSI 169 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~-k~ip~a~~~s~~~~~i~y~l~~~~~~~~~ 169 (394)
++..++....++|..-+.....-.|.|||+ |++-+....+...+..+|......-....
T Consensus 195 ~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~F 254 (411)
T KOG1305|consen 195 SLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTF 254 (411)
T ss_pred hhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 788899999999999999999999999984 68888889999999999998776655555
No 81
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=1.6 Score=36.73 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhhcc--ccHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHH
Q 016144 260 AVWLCAAICIILGLPIL--KVNVVFTAI--TSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWIC 335 (394)
Q Consensus 260 al~~~~~ls~i~~l~~~--~~~~~~~~l--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (394)
++++.++++++-.+..+ .+...+.-+ .-.+..+.+.+|++-- +..+.|.++.+||+..+ ..........+|+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~--y~yr~~ad~sqr~~~~K-~~lv~~~sm~lWi~ 177 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYY--YAYRMRADNSQRPGTWK-YLLVAVLSMLLWIA 177 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHH--HHHHhhcccccCCchHH-HHHHHHHHHHHHHH
Confidence 66777766666544211 111222222 2223344444444422 22222333445554433 22333334456777
Q ss_pred HHHHHhccCCCCCCCCCC
Q 016144 336 YTCSVFLLPTFYPISWDT 353 (394)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~ 353 (394)
+.++..+.|.+.+.+.++
T Consensus 178 v~i~t~~lPtslN~~L~p 195 (226)
T COG4858 178 VMIATVFLPTSLNPQLPP 195 (226)
T ss_pred HHHHHhhCCCcCCcCCch
Confidence 777777778777666554
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=93.03 E-value=9.9 Score=37.44 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=16.1
Q ss_pred cCCcCCCcccccchhHHHHHHHHHHHH
Q 016144 310 QKFNAGPFYLGKASRPICLIAFLWICY 336 (394)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (394)
+++..++||.+++...++++..+.++.
T Consensus 400 ~~~imG~~~~~~~~~~~~~~~~~~i~~ 426 (439)
T PRK00701 400 DRKLMGELVNPRWVKIIAWIIAVLIVA 426 (439)
T ss_pred CHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 334456677776666666666555444
No 83
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=92.96 E-value=1.5 Score=42.59 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=23.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016144 201 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY 233 (394)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 233 (394)
-+++..-++..+++-+..++..+.+.+.+-.+.
T Consensus 289 ~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~ 321 (406)
T PF00474_consen 289 LPPGLAGLFLAGILAAIMSTADSLLLAISSIFS 321 (406)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHhhhhhhhh
Confidence 456677777777777788888888888777543
No 84
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=91.73 E-value=17 Score=37.05 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=17.1
Q ss_pred cchhhchhHHHHHHHHHHHHHHHHH
Q 016144 137 KGADKTGPIAILSSIGIISIFGWAL 161 (394)
Q Consensus 137 k~p~k~ip~a~~~s~~~~~i~y~l~ 161 (394)
|| +|+..|+..++......+|+..
T Consensus 288 ks-~k~ar~s~~~~~~~~~~~~~~~ 311 (549)
T TIGR02711 288 SD-AKEARKSVFYATGFMGYFYILT 311 (549)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5678888888877766666553
No 85
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=90.79 E-value=2.3 Score=37.21 Aligned_cols=15 Identities=20% Similarity=0.218 Sum_probs=7.4
Q ss_pred HHHHHhhhccceeee
Q 016144 367 LIMLWWLLDARKWFT 381 (394)
Q Consensus 367 ~~~~~~~~~~~~~~~ 381 (394)
..++.|++++|.+.+
T Consensus 190 ~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 190 AFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHhCCC
Confidence 334445555555543
No 86
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=90.45 E-value=19 Score=35.45 Aligned_cols=50 Identities=8% Similarity=-0.097 Sum_probs=26.2
Q ss_pred HHHHHHHHHhh-HHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHH
Q 016144 110 YAVILSFLVSQ-YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 160 (394)
Q Consensus 110 ~~~~~~~~~~~-~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l 160 (394)
..++.++.... +...+....+.++...|++|. -.++...+.....+...+
T Consensus 207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~-~~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 207 WAFLYALSLVIGSFATWATNAPDFTRFGKSKKT-AIWGQFLALPGGFTLTCF 257 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc-hHHHHHHHHHHHHHHHHH
Confidence 35555544433 223444567788888887554 444455554444443333
No 87
>PRK12488 acetate permease; Provisional
Probab=89.61 E-value=26 Score=35.69 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=20.1
Q ss_pred HHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHH
Q 016144 121 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 159 (394)
Q Consensus 121 ~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~ 159 (394)
+.+.|.......---.|| +|+..|+..++......+|.
T Consensus 272 lg~~~~p~~~qR~~aaks-~k~ar~s~~~~~~~~~~~~~ 309 (549)
T PRK12488 272 FGTAGLPHILMRFFTVSD-AREARKSVLYATGFIGYFYL 309 (549)
T ss_pred HHhccCcHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 334444333332223366 56788888877655554443
No 88
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=89.31 E-value=25 Score=35.14 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=22.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016144 201 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 232 (394)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 232 (394)
-+++..-++..+++-+..++..+.+.+.+-.+
T Consensus 315 ~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 315 FHPWIAGILLAAILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777778888888888777653
No 89
>PRK11017 codB cytosine permease; Provisional
Probab=88.81 E-value=24 Score=34.30 Aligned_cols=100 Identities=9% Similarity=-0.010 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhh
Q 016144 41 GLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQ 120 (394)
Q Consensus 41 ~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (394)
++.++.......|.|...+++++...+..+..+...+..+...+ +..+. .+. . +.+. ..+..++....
T Consensus 126 i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~--g~~~~--~~~-~--~~~~-----~~~~~a~~~~~ 193 (404)
T PRK11017 126 LSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVG--GLDGL--KAI-V--PAEP-----LDFSAALTLVV 193 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhh--hcC-C--CCCc-----ccHHHHHHHHH
Confidence 34455666777888888888888776665544443332222211 11111 111 1 1111 13333333222
Q ss_pred -HHhhcccchhhhhhhhcchhhchhHHHHHHHHH
Q 016144 121 -YSLYGYDSAAHLTEETKGADKTGPIAILSSIGI 153 (394)
Q Consensus 121 -~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~ 153 (394)
+...+.-..+.++...|++|+.. .+...+..+
T Consensus 194 g~~~~~~~~~~DysRy~k~~~~~~-~~~~lg~~i 226 (404)
T PRK11017 194 GSFISGGTLTADFVRFGRSAKIAV-LATMVAFFL 226 (404)
T ss_pred HHHHHhHhcCCChHhhccCcccee-ehhHHHHHH
Confidence 22344556778888888866433 454444433
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=88.36 E-value=29 Score=34.64 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHhccCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhh
Q 016144 4 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEV-IAFIDIISMWWQVAGGLVIIIM 78 (394)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~-~~~~~~~~~~~~i~~l~~~~i~ 78 (394)
..++..+.-..+-.+ .+.+++......+..++.++.+.-...|+|. .+++.+.-..+.+..++.+.+.
T Consensus 195 lGlg~~qi~~gl~~~-------~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~ 263 (485)
T PF02028_consen 195 LGLGVPQISAGLSSL-------FGIPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLF 263 (485)
T ss_dssp HHHHHHHHHHHHHHH-------CTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH-------cCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444 3466677777777777778888888888865 5666666555555555444443
No 91
>PRK10484 putative transporter; Provisional
Probab=86.21 E-value=40 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=20.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016144 202 NSTGAIILLIVIWGSFFFGGLSVTTSAARVV 232 (394)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 232 (394)
+++..-++..+++-+..++..+.+.+.+-.+
T Consensus 325 p~~l~Gl~~a~ilAA~mST~~s~l~s~st~~ 355 (523)
T PRK10484 325 PVPLVGFFAAVLFGAILSTFNGFLNSASTLF 355 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666677777777777776653
No 92
>PRK09950 putative transporter; Provisional
Probab=86.00 E-value=40 Score=33.81 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCccccccccc-ccCCChHHHHHHHHHHHHHHhhhcccc-HHHH
Q 016144 205 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLH-PKHKVPSNAVWLCAAICIILGLPILKV-NVVF 282 (394)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~-~~~~~P~~al~~~~~ls~i~~l~~~~~-~~~~ 282 (394)
...++....++.++....+..-+++-.+-.++.+|.-+ +- | +|.+.=.+++.+.. ++..+ +..+. .+..
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~--~~----~P~~~~ri~W~i~~g~-ia~~L--l~~gG~l~~l 470 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE--GD----DPDRGLRLFWCVVITL-IPLSI--LFTGASLDTM 470 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC--CC----CCCcchhHHHHHHHHH-HHHHH--HHhCCcHHHH
Confidence 45555555555555566666666777777766655432 10 1 12222234443332 22222 22233 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016144 283 TAITSICTIGWVGGYAVPIF 302 (394)
Q Consensus 283 ~~l~~~~~~~~~i~~~~~~~ 302 (394)
+...-+..+...+...+.+.
T Consensus 471 Q~~~ii~alP~~~i~~l~~~ 490 (506)
T PRK09950 471 KTTVVLTALPFLVILLIKVY 490 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66555555555544444444
No 93
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=85.61 E-value=38 Score=33.17 Aligned_cols=187 Identities=15% Similarity=0.069 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc---ccccceeecCCCCCCCCchHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSAS---YVFTHFEMSPEATGISSKPYA 111 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.+..++.+.++...+-.=|+|..+++...+.-......+...+..... +..+-++ ..+++..+ ++.... +..+
T Consensus 166 ~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~-n~~~lp~~~~~If~~AF~--~~a~~G-G~~G 241 (425)
T TIGR00835 166 KLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIM-NIEQLPAVISLIFRSAFG--GDAAAG-GFAG 241 (425)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCC--chhhHh-HHHH
Confidence 445555566666666555999988888877766666554444432221 1111111 11121101 111111 0011
Q ss_pred ------HHHHHHHhhHHh---hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCc
Q 016144 112 ------VILSFLVSQYSL---YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 182 (394)
Q Consensus 112 ------~~~~~~~~~~af---~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~ 182 (394)
+..++.=..|+= .|....++.+.|+++|.|+=-.++.-..+=..++-.+..+.+.... .+++- +..+
T Consensus 242 ~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg-~~~~~-~~~~-- 317 (425)
T TIGR00835 242 STVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSG-VWNNG-EGLS-- 317 (425)
T ss_pred HHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccCCC-CCCc--
Confidence 111222222332 3445556667788889886555544433322222222222222111 22210 0101
Q ss_pred cCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 016144 183 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYAL 235 (394)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 235 (394)
+ .+.....+++..| .|+..++.+.+++..+++..++.+..-+-+.-+
T Consensus 318 --g---~~lt~~af~~~~g-~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 318 --G---AQLTQQALSYGLG-SFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred --H---HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2233444555433 357889999999999999999998888876665
No 94
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=85.27 E-value=5.2 Score=40.12 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHhhcC--CCCCcccccccccccCCChHHHHHHHHHHHHHHhh
Q 016144 219 FGGLSVTTSAARVVYALSRD--KGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 219 ~~~~~~~~~~sR~l~a~a~d--~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l 273 (394)
....+...+..|..++.+|+ ...+ .+.+-|.=.|.+ .+..-.-...++.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~ 377 (496)
T PRK15238 323 SMFLAYTGAFFTLSYSPLKQLIEGTP-KALWPKKMTKLN-KNGMPANAMWLQCIIVS 377 (496)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCc-cCcccHHHHhhC-cCCCcHHHHHHHHHHHH
Confidence 34445566666777777765 4443 123434333545 44444444444443333
No 95
>PRK09395 actP acetate permease; Provisional
Probab=84.72 E-value=49 Score=33.69 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=13.1
Q ss_pred hcchhhchhHHHHHHHHHHHHHH
Q 016144 136 TKGADKTGPIAILSSIGIISIFG 158 (394)
Q Consensus 136 ~k~p~k~ip~a~~~s~~~~~i~y 158 (394)
.|| +|+..|+...+......+|
T Consensus 289 aks-~k~ar~~~~~~~~~~~~~~ 310 (551)
T PRK09395 289 VSD-AKEARKSVFYATGFIGYFY 310 (551)
T ss_pred cCC-hHHHHHhHHHHHHHHHHHH
Confidence 355 5567788777655444444
No 96
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=83.45 E-value=55 Score=33.24 Aligned_cols=136 Identities=9% Similarity=0.030 Sum_probs=78.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCC
Q 016144 27 GYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGIS 106 (394)
Q Consensus 27 ~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (394)
|+..+.|...+..+.+.+++.+....|.|.++|+.-+++.+-.+++.++.+.+... ++. ++..... .+++...+-
T Consensus 246 d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l-~ga---~~g~~y~-~~~~~~kl~ 320 (629)
T KOG3659|consen 246 DLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTL-PGA---KNGIQYY-LTPDIEKLK 320 (629)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccc-ccc---ccchhhe-ecccHHHHh
Confidence 45567788888888888888899999999999996666666644444444444421 111 1111111 101111111
Q ss_pred CchHHHHHHHHHhhHHh-hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016144 107 SKPYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI 169 (394)
Q Consensus 107 ~~~~~~~~~~~~~~~af-~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~ 169 (394)
.......+...++++. .|+.....++.-.|- +.|.-|=-.+...+....+++...+.....
T Consensus 321 -~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviFsvL 382 (629)
T KOG3659|consen 321 -EPSVWIDAATQIFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIFSVL 382 (629)
T ss_pred -hHHHHHHHHHHHHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1335666777777775 488888777776654 555655555555555555555444444333
No 97
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=82.73 E-value=57 Score=32.89 Aligned_cols=27 Identities=4% Similarity=0.116 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016144 35 FLCMYIGLTIIWAVLNTFALEVIAFID 61 (394)
Q Consensus 35 ~~~i~~~~~~~~~~in~~g~~~~~~~~ 61 (394)
...+++++++..+.+.-+|....+++-
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~~F 174 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGKLF 174 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 445777888888889889987666653
No 98
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=82.04 E-value=41 Score=33.02 Aligned_cols=33 Identities=6% Similarity=0.170 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016144 39 YIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG 71 (394)
Q Consensus 39 ~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~ 71 (394)
.+++-++.......|.+...+++.+...+..+.
T Consensus 141 ~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~ 173 (440)
T PF02133_consen 141 FFIFWLIQTLFAIYGMKALRRLAVIAAPILLVV 173 (440)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhh
Confidence 334445566677788888878777665544433
No 99
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=81.27 E-value=63 Score=32.45 Aligned_cols=31 Identities=19% Similarity=-0.030 Sum_probs=22.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016144 201 HNSTGAIILLIVIWGSFFFGGLSVTTSAARV 231 (394)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 231 (394)
.+++..-++..+++-+..++..+.+.+.+-.
T Consensus 322 lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 322 FNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777888888888877754
No 100
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=71.97 E-value=1.1e+02 Score=30.38 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=34.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHH----hHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhh
Q 016144 202 NSTGAIILLIVIWGSFFFGGLSVTTSA----ARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLP 274 (394)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~ 274 (394)
++|..-++..+.+-..+++.-+...+. ++=+|++--++- .++.. +-..-+.+....++++..+...
T Consensus 341 g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~------ase~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 341 GPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKG------ATEKK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred CceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC------CCccc-eehhHHHHHHHHHHHHHHheec
Confidence 466666666555555555544444433 344444333322 33322 4455666777777777766554
No 101
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=71.41 E-value=1.2e+02 Score=30.56 Aligned_cols=90 Identities=7% Similarity=-0.107 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHH
Q 016144 205 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 284 (394)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~ 284 (394)
...++....++..+....+..-+++-.+-.++.+|.-+ +- + .|+.+.=.+++.+. +++..+. ..+..+..+.
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~--~~--~-p~~~~ri~W~v~ig-~ia~~Ll--~~GGl~~lQt 474 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRD--GE--E-PPLLVRIGWSILVG-IIGIVLL--ALGGLKPIQT 474 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC--CC--C-CCcchhhHHHHHHH-HHHHHHH--HhcCHHHHHH
Confidence 34455555555555555666666777777777765322 10 0 01222223444332 2333322 2244455555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016144 285 ITSICTIGWVGGYAVPIF 302 (394)
Q Consensus 285 l~~~~~~~~~i~~~~~~~ 302 (394)
...+..+...+...+.+.
T Consensus 475 ~sii~alPf~~i~~l~~~ 492 (504)
T PRK03356 475 AIIAGGCPLFFVNIMVTL 492 (504)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555544444333
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=70.15 E-value=1.4e+02 Score=31.08 Aligned_cols=90 Identities=9% Similarity=-0.129 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHH
Q 016144 205 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTA 284 (394)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~ 284 (394)
+..++....++..+.-..+..-+.+-.+-.++..|.-| +- + .|+.+.=.+++++.. +++.+. ..|..+.++.
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~--~~--~-pp~~~RifW~v~ig~-la~~LL--~~GGL~aLQt 478 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDI--NS--D-APNWLRVFWSVAIGL-LTLGML--MTNGISALQN 478 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCC--CC--C-CCcceeeHHHHHHHH-HHHHHH--HhcCHHHHHH
Confidence 34444444444444444455555566666666655322 00 0 012223335544333 233222 2244556666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016144 285 ITSICTIGWVGGYAVPIF 302 (394)
Q Consensus 285 l~~~~~~~~~i~~~~~~~ 302 (394)
..-+..+...+...+.+.
T Consensus 479 ~sii~alPf~~I~ll~~~ 496 (679)
T PRK09928 479 TTVIMGLPFSFVIFFVMA 496 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555544444333
No 103
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=68.64 E-value=1.1e+02 Score=31.70 Aligned_cols=55 Identities=7% Similarity=-0.069 Sum_probs=42.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016144 28 YFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 82 (394)
Q Consensus 28 ~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~ 82 (394)
.-..+|+..+.-.+.-+++.++-.+|+|..+|+..+...+-.+.++++.+.++.-
T Consensus 209 ~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL 263 (629)
T KOG3660|consen 209 FGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTL 263 (629)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccC
Confidence 3456677766555666667788889999999999998888888888888877754
No 104
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=65.49 E-value=1.3e+02 Score=28.86 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=25.2
Q ss_pred hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHH
Q 016144 124 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 163 (394)
Q Consensus 124 ~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~ 163 (394)
.|.-..+...-.-|| +|.+.++|+++..++.++-+.+-+
T Consensus 249 lglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl 287 (473)
T COG4145 249 LGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHL 287 (473)
T ss_pred hcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHH
Confidence 333333333334477 678999999999988887665443
No 105
>PRK03557 zinc transporter ZitB; Provisional
Probab=63.50 E-value=1.3e+02 Score=28.08 Aligned_cols=41 Identities=5% Similarity=-0.015 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHH
Q 016144 295 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWIC 335 (394)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (394)
++..+.....++.+|+++++.||-.+|..+..+.+..+.++
T Consensus 59 ~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 59 AALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 34444445555555666667777776665555554444333
No 106
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=58.76 E-value=1.9e+02 Score=28.46 Aligned_cols=189 Identities=15% Similarity=0.082 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc---ccc-ceeecCCCCCCCC-c
Q 016144 34 LFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASY---VFT-HFEMSPEATGISS-K 108 (394)
Q Consensus 34 ~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~-~ 108 (394)
+....++++..+...+-.-|+|..+++.....=..-+.-++..+..+...- ++-++. .+. .| . .+..... .
T Consensus 182 ~~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~-~~iP~~i~~If~sAF-~--~~aa~GG~~ 257 (452)
T COG1115 182 PPLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNI-SQIPAVIALIFSSAF-G--PKAAAGGFA 257 (452)
T ss_pred cHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhhHHHHHHHHHhcC-C--chhhhhhhh
Confidence 355667777778888888999988887665433332222222222222111 111111 111 11 1 1111110 0
Q ss_pred hH----HHHHHHHHhhHHh-hcccch--hhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCC
Q 016144 109 PY----AVILSFLVSQYSL-YGYDSA--AHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE 181 (394)
Q Consensus 109 ~~----~~~~~~~~~~~af-~G~e~~--~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~ 181 (394)
+. .+..++.=..|+= .|..++ ++.+.+++||-|+=-..+.-..+=..++--...+.+. ..+.++.-.. .
T Consensus 258 G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL-~sg~~~~~~~-~-- 333 (452)
T COG1115 258 GYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIIL-LSGAWNSGGG-L-- 333 (452)
T ss_pred hHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHH-HcCCcccCCC-C--
Confidence 11 2233333334443 244444 5556666777764433332222211111111111111 1112221110 0
Q ss_pred ccCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016144 182 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS 236 (394)
Q Consensus 182 ~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 236 (394)
.-.+.....+.+..|+ ++..++.+.+++-.+++..++.+..-|-+.-+-
T Consensus 334 -----~G~~ltq~A~~~~~g~-~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 334 -----SGAALTQAAFSSHLGS-WGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred -----chHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223445556555444 689999999999999999999988888765544
No 107
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=58.60 E-value=2e+02 Score=28.78 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=20.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016144 202 NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 234 (394)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 234 (394)
++|..-++....+-+..++..+.+.+.+-.+-.
T Consensus 323 p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~ 355 (493)
T COG0591 323 PPWIAGLLLAAILAAVMSTASSQLLVASSAITR 355 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444566655566666666776666666654433
No 108
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=52.99 E-value=1.5e+02 Score=25.60 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=5.6
Q ss_pred CChHHHHHHH
Q 016144 255 KVPSNAVWLC 264 (394)
Q Consensus 255 ~~P~~al~~~ 264 (394)
+.|+++.+..
T Consensus 26 ~n~v~s~l~L 35 (198)
T PRK06638 26 RNPVHSALFL 35 (198)
T ss_pred ccHHHHHHHH
Confidence 3577765443
No 109
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.50 E-value=12 Score=29.52 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhccceeee
Q 016144 362 GVGLGLIMLWWLLDARKWFT 381 (394)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (394)
+++.++++++|+++|+|++.
T Consensus 76 GvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 33444455666666655544
No 110
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=50.40 E-value=86 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhccceeeeCCccccCCCCCC
Q 016144 361 LGVGLGLIMLWWLLDARKWFTGPVRNIDNENGK 393 (394)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 393 (394)
++.+++++.+.|-.|++-..+.+....+..|+|
T Consensus 55 lG~vl~lGilifs~y~~C~~~~~~~r~n~s~ie 87 (91)
T PHA02680 55 VGAVLLLGLFVFSMYRKCSGSMPYERLNNTDIE 87 (91)
T ss_pred HHHHHHHHHHHHHHhcccCCCceeecccCCccc
Confidence 344555566666666643333333334444443
No 111
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=49.76 E-value=5.4 Score=35.97 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=0.0
Q ss_pred cccccCCChHHHHHHHHHHHHHHh
Q 016144 249 QLHPKHKVPSNAVWLCAAICIILG 272 (394)
Q Consensus 249 ~~~~~~~~P~~al~~~~~ls~i~~ 272 (394)
+++||.-.|..++++...+-++.+
T Consensus 13 ~r~pr~p~~~a~l~~~~llll~ai 36 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLLLLVAI 36 (381)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcchhHHHHHHHHHHHH
Confidence 456666666666666555444433
No 112
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=45.77 E-value=2.3e+02 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHH
Q 016144 294 VGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAF 331 (394)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (394)
.+...+.....++.+|+++++.||-.+|..+..+.+..
T Consensus 50 ~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 50 IAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 34444445555555566666777777665555555443
No 113
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=44.80 E-value=3.3e+02 Score=27.06 Aligned_cols=98 Identities=14% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC-C---CCcccccccccccCCChHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDK-G---IPFSSIWRQLHPKHKVPSNAVWLCA 265 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~-~---lP~~~~f~~~~~~~~~P~~al~~~~ 265 (394)
....+.+++. | ...++....++..+....+..-+++-.+-.++.++ . =| + |.+.=.+++.. +
T Consensus 343 ~a~~~~l~~l---P-~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep--~-------~~~ri~W~v~i-g 408 (453)
T TIGR00842 343 RALFGLLQAL---P-LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGEEP--P-------KWVRVFWAVAI-G 408 (453)
T ss_pred hHHHHHHHHC---c-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCC--C-------cccchHHHHHH-H
Confidence 3444555433 2 44455555555455555555556666666553322 2 24 2 22333355544 3
Q ss_pred HHHHHHhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016144 266 AICIILGLPILKV-NVVFTAITSICTIGWVGGYAVPIFA 303 (394)
Q Consensus 266 ~ls~i~~l~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~ 303 (394)
.++..+.+ .+. .+..+....+..+...+...+.+..
T Consensus 409 ~~a~~ll~--~gG~l~~lQ~~~ii~alP~~~i~~l~~~s 445 (453)
T TIGR00842 409 LIALVLLF--SGGSLAALQTTAIIAALPFSLVMLVVMAS 445 (453)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 233 4555555555555555444444443
No 114
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=43.67 E-value=3.7e+02 Score=27.36 Aligned_cols=29 Identities=0% Similarity=-0.277 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 016144 203 STGAIILLIVIWGSFFFGGLSVTTSAARV 231 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 231 (394)
++..-++..+.+-+..++..+.+.+.+-.
T Consensus 365 ~~l~gl~~ag~~aA~mSt~~s~l~a~st~ 393 (552)
T TIGR03648 365 YWVIGLVAAGGLAAALSTAAGLLLVISSA 393 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777777666554
No 115
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=42.40 E-value=1.1e+02 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 298 AVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
.+..+..++.+|+++.+.||-.+|...+.+.+..+.+.+..+..
T Consensus 56 i~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i 99 (304)
T COG0053 56 LIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEI 99 (304)
T ss_pred HHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666777777788776655555554444444433333
No 116
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=41.22 E-value=71 Score=30.00 Aligned_cols=57 Identities=7% Similarity=0.037 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHHHHHHHhccCCCCCC---CCCCccchHHHHHHHHHHHHHHhhhccce
Q 016144 322 ASRPICLIAFLWICYTCSVFLLPTFYPI---SWDTFNYAPVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
..+.+++++.++.-..++..++..+.+. ..+...|..+....+++.++.+|+.++|+
T Consensus 261 imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~ 320 (322)
T COG0598 261 IMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKG 320 (322)
T ss_pred HHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777777777777777766665542 23333333333333333444444444443
No 117
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=40.95 E-value=50 Score=19.08 Aligned_cols=7 Identities=29% Similarity=-0.083 Sum_probs=2.5
Q ss_pred HHhhhcc
Q 016144 370 LWWLLDA 376 (394)
Q Consensus 370 ~~~~~~~ 376 (394)
..++.++
T Consensus 24 ~~~~~~~ 30 (34)
T TIGR01167 24 GGLLLRK 30 (34)
T ss_pred HHHHhee
Confidence 3333333
No 118
>PRK09546 zntB zinc transporter; Reviewed
Probab=39.23 E-value=75 Score=29.80 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHhccCCC
Q 016144 324 RPICLIAFLWICYTCSVFLLPTF 346 (394)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (394)
+.+.+++.+++-..++..++..+
T Consensus 265 ~~Ltilt~IflPlT~IaGiyGMN 287 (324)
T PRK09546 265 YTMSLMAMVFLPTTFLTGLFGVN 287 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 44555555555544554444444
No 119
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=39.04 E-value=75 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=29.5
Q ss_pred hhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHH
Q 016144 130 AHLTEETKGADKTGPIAILSSIGIISIFGWALILA 164 (394)
Q Consensus 130 ~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~ 164 (394)
..+=+|++.|=|.+.+-...+...++.+..++...
T Consensus 7 ~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~ 41 (75)
T PF11998_consen 7 ARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLF 41 (75)
T ss_pred HHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999998888776554
No 120
>PRK11056 hypothetical protein; Provisional
Probab=38.29 E-value=1.9e+02 Score=22.59 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 016144 345 TFYPISWDT 353 (394)
Q Consensus 345 ~~~~~~~~~ 353 (394)
..+|...++
T Consensus 85 aeyPeiGSN 93 (120)
T PRK11056 85 AEYPEIGSN 93 (120)
T ss_pred hcCcccccc
Confidence 344444443
No 121
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=37.16 E-value=1.1e+02 Score=20.41 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=24.5
Q ss_pred HHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHH
Q 016144 114 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWA 160 (394)
Q Consensus 114 ~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l 160 (394)
..+-...|+|.|...-.+.-++.++ .=|...+..-++.+++++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~---~~p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQ---GSPVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHc---CCCchHHHHHHHHHHHHHH
Confidence 3455677999998876666555533 2244444444444444333
No 122
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=37.05 E-value=68 Score=29.88 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHhccCCCC
Q 016144 322 ASRPICLIAFLWICYTCSVFLLPTFY 347 (394)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (394)
..+.+.+++.++.-..++..++..+.
T Consensus 257 ~mk~LTvvt~IflP~t~IaGiyGMNf 282 (318)
T TIGR00383 257 IMKILTVVSTIFIPLTFIAGIYGMNF 282 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44566777777776666666665544
No 123
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=36.11 E-value=2.4e+02 Score=23.12 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=10.2
Q ss_pred HHHhhhccceeeeCCccc
Q 016144 369 MLWWLLDARKWFTGPVRN 386 (394)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (394)
.++-..+.|+.++||-+.
T Consensus 137 ~~~s~~W~~~f~~GPlE~ 154 (163)
T PF04235_consen 137 LLFSYLWLRRFRRGPLEW 154 (163)
T ss_pred HHHHHHHHHhcCcCcHHH
Confidence 333334566677787653
No 124
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=36.10 E-value=1e+02 Score=28.94 Aligned_cols=27 Identities=4% Similarity=0.017 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHHHhccCCCCC
Q 016144 322 ASRPICLIAFLWICYTCSVFLLPTFYP 348 (394)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (394)
..+.+.+++.+++-..++..++..+.+
T Consensus 255 ~mk~lTv~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 255 IIKIFSVVSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 345666666666666666666655543
No 125
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=33.48 E-value=4.5e+02 Score=25.34 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhhHH-h
Q 016144 45 IWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYS-L 123 (394)
Q Consensus 45 ~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-f 123 (394)
+.......|.|...+++.+...+..+..+...+....+.+ .. ... + ++... ++..+.....-. -
T Consensus 122 l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-----~~~-~--~~~~~-----s~~~~~~~~~~~~~ 186 (386)
T TIGR02358 122 LVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD--LS-----ELW-N--RAGDM-----SFAVAVELVIAMPL 186 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hh-----hhc-C--CCCCc-----cHHHHHHHHHHHHH
Confidence 5666777899999999988777666655554443332211 11 011 1 11111 222222211111 1
Q ss_pred hcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHH
Q 016144 124 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALIL 163 (394)
Q Consensus 124 ~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~ 163 (394)
.+....+.++...|+||| .-++...+..+...+-.+...
T Consensus 187 swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~ 225 (386)
T TIGR02358 187 SWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGL 225 (386)
T ss_pred HHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHH
Confidence 122236777888887554 556666665555554444333
No 126
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=31.67 E-value=57 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.5
Q ss_pred hhhcchh-hchhHHHHHHHHHHHHHHHHHHH
Q 016144 134 EETKGAD-KTGPIAILSSIGIISIFGWALIL 163 (394)
Q Consensus 134 ~E~k~p~-k~ip~a~~~s~~~~~i~y~l~~~ 163 (394)
|--+||| |..||+.+.+.+.+.+..+....
T Consensus 205 EGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 205 EGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred ecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 5568898 88999999999888777665433
No 127
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.52 E-value=2.2e+02 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhccce
Q 016144 358 PVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~ 378 (394)
..+++.++.++.+.|-.|.|+
T Consensus 51 ~FI~giil~lG~~i~s~ygr~ 71 (92)
T PF05767_consen 51 CFILGIILTLGIVIFSMYGRY 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345566666777777777554
No 128
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=31.28 E-value=2.7e+02 Score=22.70 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhccceee
Q 016144 359 VALGVGLGLIMLWWLLDARKWF 380 (394)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
....++.....+-|+.+.||.+
T Consensus 123 l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 123 LLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred HHHHHHHHHHHHHHHHHhHHhh
Confidence 3333444444455666555533
No 129
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=30.89 E-value=1.4e+02 Score=27.08 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=4.0
Q ss_pred HHHHHHHHhh
Q 016144 297 YAVPIFARMV 306 (394)
Q Consensus 297 ~~~~~~~~~~ 306 (394)
+-++.....+
T Consensus 169 FelPli~~~L 178 (258)
T PRK10921 169 FEVPVAIVLL 178 (258)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 130
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=30.69 E-value=2.2e+02 Score=21.00 Aligned_cols=18 Identities=0% Similarity=-0.095 Sum_probs=9.7
Q ss_pred CChHHHHHHHHHHHHHHh
Q 016144 255 KVPSNAVWLCAAICIILG 272 (394)
Q Consensus 255 ~~P~~al~~~~~ls~i~~ 272 (394)
+.|.++.+..........
T Consensus 26 kn~v~svl~l~~~~~~~a 43 (88)
T PRK06433 26 RDVWHSALYLGVALFSVA 43 (88)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 356676665555544443
No 131
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=30.57 E-value=39 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhccce
Q 016144 363 VGLGLIMLWWLLDARK 378 (394)
Q Consensus 363 ~~~~~~~~~~~~~~~~ 378 (394)
+.++++.+.|+.|+|+
T Consensus 24 I~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 24 IIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHhheEEecc
Confidence 3333344444444443
No 132
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=27.85 E-value=6.4e+02 Score=25.36 Aligned_cols=222 Identities=10% Similarity=0.008 Sum_probs=101.9
Q ss_pred chhhhHHHHHHHHHHHhccCC-CCCCccc---chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 016144 3 TQAYAGSQTLQSIILLCTGTN-KDGGYFA---PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIM 78 (394)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~ 78 (394)
+.++.+++.++-+..-..... +-|+... .+-..++...++-++...+-.++.....++...-.++.....+.+.+.
T Consensus 150 ~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw 229 (572)
T KOG2466|consen 150 VNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIW 229 (572)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHH
Confidence 456677777777665332000 0011111 111122233333344444555576666666666666666666666666
Q ss_pred hhhcccccccccccccceeecCCCCCCCCchHHHHHHHHHhhHHhhccc----chhhhhhhhcchhhchhHHHHHHHHHH
Q 016144 79 LPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYD----SAAHLTEETKGADKTGPIAILSSIGII 154 (394)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e----~~~~~~~E~k~p~k~ip~a~~~s~~~~ 154 (394)
.+.++++-++ . +++- . ..++.. ..+.+..++ ...+.+|. ..+..+.=.|+|.+ .+...+.++.+.
T Consensus 230 ~l~kAhG~G~--l-~~~~-s--t~~gs~-~aWa~~~~i---~~~~~~fstl~~N~pDFsRF~ksp~a-~~~~Ql~alp~~ 298 (572)
T KOG2466|consen 230 LLKKAHGLGH--L-FDSK-S--TVSGSA-HAWAFVRSI---MSCIANFSTLIVNAPDFSRFAKSPNA-IWWGQLIALPLP 298 (572)
T ss_pred HHHhcCCccc--c-ccCC-C--cccccc-hhHHHHHHH---HHHHhccchhhccCchhHhhcCCCCc-cchhhhhhhhhh
Confidence 6655543211 1 1111 1 112221 123444433 34444444 34555556677654 444444444443
Q ss_pred HHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHHHHHHHhcccc--CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016144 155 SIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRY--HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 232 (394)
Q Consensus 155 ~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 232 (394)
..+-.+.-+.... .-+.+-+..- ..| .+++.+.+++.+ |.+.+..++.++..++.++...+.- -+-
T Consensus 299 ~~l~~liGVlv~s---a~~~iYG~~~----W~P-ldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISan----~va 366 (572)
T KOG2466|consen 299 FGLTPLIGVLVTS---ASKIIYGTNY----WSP-LDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNISAN----SVA 366 (572)
T ss_pred hhhhhheeeEehh---hhhhhhcccc----cCH-HHHHHHHhccccccccchhhhHHHHHHHHHHHhcchhcc----ccc
Confidence 3322221111111 1122222221 223 244455554422 5566777777777777766554332 223
Q ss_pred HHhhcCCCCCccccccc
Q 016144 233 YALSRDKGIPFSSIWRQ 249 (394)
Q Consensus 233 ~a~a~d~~lP~~~~f~~ 249 (394)
.++.-.+++| |++.-
T Consensus 367 agnDl~~L~P--kyinI 381 (572)
T KOG2466|consen 367 AGNDLSALLP--KYINI 381 (572)
T ss_pred cchhhHhhCc--ceEEe
Confidence 3445557889 77655
No 133
>PLN02351 cytochromes b561 family protein
Probab=26.17 E-value=4.8e+02 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHhhhccce
Q 016144 357 APVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~ 378 (394)
....+.+++..+.+.|...+.+
T Consensus 202 N~~Glliv~fG~~Vv~~~~~p~ 223 (242)
T PLN02351 202 NGLGLGLALLSGIVILAAVLPK 223 (242)
T ss_pred HHHHHHHHHHHHHHHHhhcCcc
Confidence 3444555555556666654433
No 134
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=25.31 E-value=2.9e+02 Score=24.93 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=19.8
Q ss_pred HHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHh
Q 016144 303 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVF 341 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
.....+|.+.++.||-.+|..+..+....+..+...+..
T Consensus 47 ~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~~~~~~ 85 (284)
T PF01545_consen 47 ALRIASKPPDKRYPFGYGRLEPLAALIVSILLIFLGLFL 85 (284)
T ss_dssp HHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCccccccchhhhhhHhhhhhhhhHhhhHHHH
Confidence 333334555666677666665655555544444433333
No 135
>PHA02898 virion envelope protein; Provisional
Probab=25.11 E-value=2.7e+02 Score=20.53 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhccce
Q 016144 358 PVALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~ 378 (394)
..+++.+++++.+.|-.|+|+
T Consensus 51 ~FIlgivl~lG~~ifs~y~r~ 71 (92)
T PHA02898 51 SFILAIILILGIIFFKGYNMF 71 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 355566667777777766654
No 136
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=24.95 E-value=1.9e+02 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHhhhcccCCcCCCcccccchhHHHHHHHHHH
Q 016144 301 IFARMVMAEQKFNAGPFYLGKASRPICLIAFLWI 334 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (394)
....+..+|++.++.||-.+|..+..+.+..+.+
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l 69 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLNGLFL 69 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 3344444566666677766655555554443333
No 137
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.05 E-value=85 Score=20.11 Aligned_cols=8 Identities=0% Similarity=-0.325 Sum_probs=3.1
Q ss_pred Hhhhccce
Q 016144 371 WWLLDARK 378 (394)
Q Consensus 371 ~~~~~~~~ 378 (394)
.++.++++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33344433
No 138
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=23.59 E-value=1e+02 Score=25.76 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=22.6
Q ss_pred hhhcchh-hchhHHHHHHHHHHHHHHHHHHH
Q 016144 134 EETKGAD-KTGPIAILSSIGIISIFGWALIL 163 (394)
Q Consensus 134 ~E~k~p~-k~ip~a~~~s~~~~~i~y~l~~~ 163 (394)
|.-+||| |.+||+.+.+.+...+..++..+
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 5568897 88999999998887766555433
No 139
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.43 E-value=7.2e+02 Score=24.67 Aligned_cols=43 Identities=16% Similarity=-0.062 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016144 40 IGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLV 82 (394)
Q Consensus 40 ~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~ 82 (394)
.+.-+...++|..-++...|+..+--.+-.-.++.+|.++.+.
T Consensus 364 ~i~Ni~llilnlp~i~l~akll~iP~~~L~p~I~~f~~iG~Y~ 406 (504)
T COG3333 364 IIGNIMLLILNLPLIGLFAKLLRIPYSVLYPIILAFCAIGVYA 406 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCcHHHHHHHHHHHHHhhhhh
Confidence 3344667889999999999999998888888888888887764
No 140
>PHA03049 IMV membrane protein; Provisional
Probab=23.15 E-value=1.3e+02 Score=20.72 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhccceee
Q 016144 362 GVGLGLIMLWWLLDARKWF 380 (394)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (394)
+.+.+.+.+.|-.|+|++.
T Consensus 10 ICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3444456666777776643
No 141
>PHA03048 IMV membrane protein; Provisional
Probab=23.07 E-value=3e+02 Score=20.29 Aligned_cols=20 Identities=25% Similarity=0.332 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhccce
Q 016144 359 VALGVGLGLIMLWWLLDARK 378 (394)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~ 378 (394)
++++.++.++.+.|..|+|+
T Consensus 51 FIlgivl~lG~~ifsmy~r~ 70 (93)
T PHA03048 51 FVLGIVMTIGMLIYSMWGRY 70 (93)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45566667777777777654
No 142
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=22.19 E-value=3.4e+02 Score=24.04 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 016144 279 NVVFTAITSICTIG 292 (394)
Q Consensus 279 ~~~~~~l~~~~~~~ 292 (394)
.+.++.+.......
T Consensus 57 ~~~~~~i~~yg~~~ 70 (224)
T PF09930_consen 57 MEIYEFILRYGMVI 70 (224)
T ss_pred HHHHHHHHHHhHHH
Confidence 44555555554433
No 143
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.01 E-value=9e+02 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHhhhcc
Q 016144 357 APVALGVGLGLIMLWWLLDA 376 (394)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ 376 (394)
..++.+...+..++.|-.+.
T Consensus 275 a~lviG~~~Lv~F~~wE~~~ 294 (599)
T PF06609_consen 275 APLVIGFVLLVAFVVWEWFG 294 (599)
T ss_pred hhHHHHHHHHHHHHHhhhhc
Confidence 45666666666666665443
No 144
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=21.95 E-value=8.7e+02 Score=24.86 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHHHhh
Q 016144 211 IVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l 273 (394)
+...+..+..=...+...--+.-++++.+..| +--+.. ++++|....++.+++-++..+
T Consensus 482 iil~~~M~iGR~Gpit~~lAlAgsla~kk~~p--~~~gtl--~t~~~~F~~ll~~~ilivgaL 540 (559)
T PRK05482 482 LTLGIAMLLGRFLPIIPVLAIAGSLAAKKRVP--ESAGTL--PTDGPLFVGLLIGVILIVGAL 540 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCcc--cCCChHHHHHHHHHHHHHHHH
Confidence 33333344333444444444566889999999 666543 568899988888777666555
No 145
>COG4025 Predicted membrane protein [Function unknown]
Probab=20.82 E-value=3.2e+02 Score=24.31 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.3
Q ss_pred HHhHHHHHhhcCCCCC
Q 016144 227 SAARVVYALSRDKGIP 242 (394)
Q Consensus 227 ~~sR~l~a~a~d~~lP 242 (394)
+.-|-..++.||+++|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4567888999999988
Done!