Query 016144
Match_columns 394
No_of_seqs 143 out of 1581
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 100.0 2.9E-39 9.8E-44 322.3 28.5 330 26-375 121-464 (511)
2 3l1l_A Arginine/agmatine antip 100.0 2.6E-35 9E-40 288.6 28.7 318 31-388 121-440 (445)
3 3gia_A Uncharacterized protein 100.0 7.9E-33 2.7E-37 270.9 28.2 273 30-340 120-392 (444)
4 2jln_A MHP1; hydantoin, transp 97.5 0.082 2.8E-06 51.6 27.5 41 41-81 148-188 (501)
5 2a65_A Leutaa, Na(+):neurotran 97.2 0.034 1.2E-06 54.3 19.5 125 32-159 165-291 (519)
6 3dh4_A Sodium/glucose cotransp 96.0 1.1 3.7E-05 44.0 21.5 67 201-273 317-386 (530)
7 2xq2_A Sodium/glucose cotransp 93.2 7.2 0.00025 38.6 21.1 32 201-232 346-377 (593)
8 2ks1_B Epidermal growth factor 57.8 13 0.00046 22.6 3.6 12 367-378 27-38 (44)
9 2l2t_A Receptor tyrosine-prote 56.7 6.9 0.00024 23.8 2.2 10 369-378 28-37 (44)
10 3rko_J NADH-quinone oxidoreduc 51.4 99 0.0034 25.3 9.2 11 255-265 23-33 (184)
11 2wsw_A BCCT family betaine/car 46.6 2.1E+02 0.007 27.5 23.9 63 4-73 213-276 (509)
12 3j1z_P YIIP, cation efflux fam 42.1 62 0.0021 28.7 7.1 45 280-330 44-88 (306)
13 4ev6_A Magnesium transport pro 38.1 35 0.0012 30.9 4.8 25 323-347 279-303 (339)
14 2iub_A CORA, divalent cation t 36.4 46 0.0016 30.5 5.4 26 322-347 302-327 (363)
15 3h90_A Ferrous-iron efflux pum 30.8 1.6E+02 0.0055 25.5 7.9 31 302-332 51-81 (283)
16 4ain_A Glycine betaine transpo 28.4 4.1E+02 0.014 25.6 12.5 45 3-54 213-258 (539)
17 2ww9_C Protein transport prote 20.8 61 0.0021 22.8 2.4 39 13-53 44-82 (87)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2.9e-39 Score=322.28 Aligned_cols=330 Identities=13% Similarity=0.073 Sum_probs=254.0
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhccccccccc--ccccceeecCCC
Q 016144 26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALTTQSAS--YVFTHFEMSPEA 102 (394)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~-l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~ 102 (394)
|++..++|+..+++++++++.+.+|++|+|..+++|.+.+.++++. ++++++.++.....+++.+ ...+++ . ++
T Consensus 121 p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~ 197 (511)
T 4djk_A 121 PALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF-F--PD 197 (511)
T ss_dssp GGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC-C--CC
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc-C--CC
Confidence 6777788999999999999999999999999999999998886554 5555555554322222111 111222 1 11
Q ss_pred CCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCc
Q 016144 103 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET 182 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~ 182 (394)
... .+.+.++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++..++..... +.++...+
T Consensus 198 ~~~----~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~---- 268 (511)
T 4djk_A 198 FSK----VGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLS---- 268 (511)
T ss_dssp TTS----TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSS----
T ss_pred ccc----chHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhcccc----
Confidence 100 123345667789999999999999999999999999999999999999999999999988 55554332
Q ss_pred cCCCcHHHHHHHHhccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHH
Q 016144 183 AGAFVPAQILYDAFHGRYH--NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNA 260 (394)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~a 260 (394)
.+..+.+...++.. | .++...++.+..+++.+++.++.+.+.+|++++|||||.+| ++|+|+| |+++|+++
T Consensus 269 ---~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~a 341 (511)
T 4djk_A 269 ---AGVMQTFTVLMSHV-APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTL 341 (511)
T ss_dssp ---STHHHHHHHHHSSS-CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCC-SSSCCCHH
T ss_pred ---chHHHHHHHHHHHh-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcC-CCCCcHHH
Confidence 23455555555544 6 56788899999999999999999999999999999999999 9999999 57999999
Q ss_pred HHHHHHHHHHHhhhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCcCCCcccc--cch-hHHHHHHH
Q 016144 261 VWLCAAICIILGLPILKV-----NVVFTAITSICTIGWVGGYAVPIFA-RMVMAEQKFNAGPFYLG--KAS-RPICLIAF 331 (394)
Q Consensus 261 l~~~~~ls~i~~l~~~~~-----~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 331 (394)
++++..+..+..+ ..++ .+.++.+.++.++..+++|.+++.. .++|+|+++.+||||.+ +++ +.+++++.
T Consensus 342 i~~~~~~~~l~~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (511)
T 4djk_A 342 VISQLVITSIALI-ILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL 420 (511)
T ss_dssp HHHHHHHHHHHHH-HHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHH
Confidence 9998554443322 2233 5679999999999999999988774 45555666778999997 444 56788889
Q ss_pred HHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhc
Q 016144 332 LWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLD 375 (394)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (394)
+++++..+..++|...+.+.+.++|.....+.++++..++|+.+
T Consensus 421 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 421 LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888889998877777777777777663
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.6e-35 Score=288.62 Aligned_cols=318 Identities=16% Similarity=0.124 Sum_probs=237.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 31 PKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
++|+..+++++++++.+.+|++|+|..++++.+++.++++.++++++.++...+.++ ..+++ . +.+++ +..
T Consensus 121 ~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~----~~~~~-~---~~~~~-~~~ 191 (445)
T 3l1l_A 121 DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGET----YMAAW-N---VSGLG-TFG 191 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCC----CCCC---------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh----ccccc-C---ccCCc-cHH
Confidence 457888899999999999999999999999999999999999888887765432211 11223 1 11221 234
Q ss_pred HHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHHH
Q 016144 111 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ 190 (394)
Q Consensus 111 ~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (394)
++..++...+|+|.|+|..++++||+|||||++|||+..+..+++++|++..++..... +++++.+. ..|..+
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~p~~~ 264 (445)
T 3l1l_A 192 AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMI-PNAALRVS------ASPFGD 264 (445)
T ss_dssp -HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSCST------TCTHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcc------CcHHHH
Confidence 78889999999999999999999999999999999999999999999999999988888 66665443 357777
Q ss_pred HHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHHH
Q 016144 191 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII 270 (394)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i 270 (394)
.+.... ++++..++.+..+++.+++.++.+++.+|++++|||||.+| ++|+|+| |+++|+++++++.+++.+
T Consensus 265 ~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~-~~~~P~~a~~~~~~~~~~ 336 (445)
T 3l1l_A 265 AARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLIIVGILMTI 336 (445)
T ss_dssp HHHHHH-----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCC-TTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcC-CCCCCHHHHHHHHHHHHH
Confidence 766664 34478888999999999999999999999999999999999 9999999 579999999999998887
Q ss_pred Hhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHHhccCCCCC
Q 016144 271 LGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP 348 (394)
Q Consensus 271 ~~l~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (394)
+.+...++ .+.++.+.++.++...+.|.+++......||++.++ |.+ ..+.++.++.+.+++.....
T Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~---r~~-~~~~~~~~~~~~~~~~~~~~------- 405 (445)
T 3l1l_A 337 FQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGK---ARP-AYLAVTTIAFLYCIWAVVGS------- 405 (445)
T ss_dssp HHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGG---GCT-TTHHHHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---ccc-hhHHHHHHHHHHHHHHHHHc-------
Confidence 76544333 246889999999999999998877554443332222 333 56777777777776655432
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhhccceeeeCCccccC
Q 016144 349 ISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNID 388 (394)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (394)
. ........++.+.+..+|+.++||++++++.+.+
T Consensus 406 ----~-~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~ 440 (445)
T 3l1l_A 406 ----G-AKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA 440 (445)
T ss_dssp ----C-HHHHHHHHHHHHHHHHHHHHHHSTTCCCSSCCCC
T ss_pred ----C-HHHHHHHHHHHHHHHHHHHHHhhhcccCcccccc
Confidence 1 1122334445555666666655555544444433
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=7.9e-33 Score=270.95 Aligned_cols=273 Identities=14% Similarity=0.140 Sum_probs=214.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCch
Q 016144 30 APKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKP 109 (394)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
+++|...+++++++++.+.+|++|+|..++++.+++.+|++.++++++.++...+.+ ++ . + ..++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~--------~~-~--~-~~~~~g~ 187 (444)
T 3gia_A 120 INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPS--------YV-I--P-DLAPSAV 187 (444)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG--------GT-S--C-CCSHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh--------hc-C--C-CCCCcch
Confidence 456777788999999999999999999999999999999999999888877653211 11 1 1 1111112
Q ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCccCCCcHH
Q 016144 110 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA 189 (394)
Q Consensus 110 ~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (394)
.+++.+....+|+|.|+|.+++++||+|||+|++||++..+..+++++|++..++..... +++++.+++. .|..
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~l~~~~~-----~~~~ 261 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNL-PIDELIKASE-----NALA 261 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTGG-----GHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcccc-----hhHH
Confidence 378888889999999999999999999999999999999999999999999999998888 7777755432 4666
Q ss_pred HHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHHHHHHHHHHH
Q 016144 190 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 269 (394)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~ 269 (394)
+...+..+ +++..++.+..+++.+++.++.+++.+|++++|||||.+| ++|+|+| | ++|+++++++.+++.
T Consensus 262 ~~~~~~~g-----~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~-~-~~P~~a~~~~~~~~~ 332 (444)
T 3gia_A 262 VAAKPFLG-----NLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP--EFFERKV-W-FKSTEGLYITSALGV 332 (444)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTS-C-CSCTHHHHHHHHHHH
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCC-C-CCCcHHHHHHHHHHH
Confidence 66655553 3477888999999999999999999999999999999999 9999988 4 569999999999998
Q ss_pred HHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHHHHHHHHHHHH
Q 016144 270 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV 340 (394)
Q Consensus 270 i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (394)
++.+.. .++.+.++.+...++.|.+.+......||++.. + ++.+.++.+.+++.++....
T Consensus 333 ~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 392 (444)
T 3gia_A 333 LFALLF-----NMEGVASITSAVFMVIYLFVILSHYILIDEVGG-R-----KEIVIFSFIVVLGVFLLLLY 392 (444)
T ss_dssp HHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC-C-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-c-----chHHHHHHHHHHHHHHHHHH
Confidence 876652 367888999999999999887755444333211 1 14555666555555544433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.51 E-value=0.082 Score=51.62 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016144 41 GLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPL 81 (394)
Q Consensus 41 ~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~~ 81 (394)
++.++...+...|.|...+++.+...+.++..+.+.+..+.
T Consensus 148 i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~ 188 (501)
T 2jln_A 148 IFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLD 188 (501)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788999999999998887777776666555543
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.17 E-value=0.034 Score=54.28 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccceeecCCCCCCCCchH
Q 016144 32 KWLFLCMYIGLTIIWAVLNTFAL-EVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPY 110 (394)
Q Consensus 32 ~~~~~~i~~~~~~~~~~in~~g~-~~~~~~~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
+|+..+..++..++..++..+|+ |..+|...++.-+-.+.++++.+.++...++.+++......+.. |+-+... +..
T Consensus 165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~-Pd~s~L~-~~~ 242 (519)
T 2a65_A 165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT-PDFEKLK-DPG 242 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS-CCTTSTT-CHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-CCHHHhC-CHH
Confidence 47777666777788888999999 67999999888777777777777665432210001111111101 1222222 234
Q ss_pred HHHHHHHHhhHHhh-cccchhhhhhhhcchhhchhHHHHHHHHHHHHHHH
Q 016144 111 AVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW 159 (394)
Q Consensus 111 ~~~~~~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~ 159 (394)
....+...++|+.. |+.....++.=.|+ +.|++|.-......-..+-+
T Consensus 243 vw~~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 243 VWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 67888999999996 98888888887775 77888876665555444433
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.00 E-value=1.1 Score=43.98 Aligned_cols=67 Identities=10% Similarity=-0.022 Sum_probs=37.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCccccccc-ccccC--CChHHHHHHHHHHHHHHhh
Q 016144 201 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ-LHPKH--KVPSNAVWLCAAICIILGL 273 (394)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~-~~~~~--~~P~~al~~~~~ls~i~~l 273 (394)
-+++..-++..+++-+..++..+.+.+.+-.+. +|=.-| .+++ .++|+ +.-+.+.++.+++++++..
T Consensus 317 lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~---~Diy~~---~~~~~~s~~~~~~v~R~~~v~~~i~a~~~a~ 386 (530)
T 3dh4_A 317 LPVGVKGVVFAALAAAIVSSLASMLNSTATIFT---MDIYKE---YISPDSGDHKLVNVGRTAAVVALIIACLIAP 386 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCCC---CCCSCSCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777888888888888777543 343322 2211 11111 1224556666666666553
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=93.21 E-value=7.2 Score=38.64 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=23.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016144 201 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV 232 (394)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 232 (394)
-+++..-++..+.+-+..++..+.+.+.+-.+
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777778888888877777654
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=57.84 E-value=13 Score=22.57 Aligned_cols=12 Identities=17% Similarity=0.096 Sum_probs=4.9
Q ss_pred HHHHHhhhccce
Q 016144 367 LIMLWWLLDARK 378 (394)
Q Consensus 367 ~~~~~~~~~~~~ 378 (394)
++..+|++.+||
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 334444444443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.75 E-value=6.9 Score=23.84 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=3.8
Q ss_pred HHHhhhccce
Q 016144 369 MLWWLLDARK 378 (394)
Q Consensus 369 ~~~~~~~~~~ 378 (394)
..+|++.+||
T Consensus 28 ~~~~~~~RRR 37 (44)
T 2l2t_A 28 LTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3333333333
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=51.44 E-value=99 Score=25.26 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=6.2
Q ss_pred CChHHHHHHHH
Q 016144 255 KVPSNAVWLCA 265 (394)
Q Consensus 255 ~~P~~al~~~~ 265 (394)
+.|+++.+...
T Consensus 23 ~n~v~s~l~Li 33 (184)
T 3rko_J 23 TNPVHALLYLI 33 (184)
T ss_dssp CSHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 35777655433
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=46.56 E-value=2.1e+02 Score=27.53 Aligned_cols=63 Identities=11% Similarity=-0.032 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHhccCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Q 016144 4 QAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFAL-EVIAFIDIISMWWQVAGGL 73 (394)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~-~~~~~~~~~~~~~~i~~l~ 73 (394)
..++..+.-..+-.+.+ .+++......+..++.++.+.-...|+ |-.+++.++-..+.++.++
T Consensus 213 LGlg~~qi~~Gl~~lfG-------i~~~~~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~ 276 (509)
T 2wsw_A 213 LGLATPLVTECIQYLFG-------IPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLG 276 (509)
T ss_dssp HHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-------CCCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444432 344445555555555555555555666 3344444443344333333
No 12
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=42.12 E-value=62 Score=28.75 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcccccchhHHHHHH
Q 016144 280 VVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIA 330 (394)
Q Consensus 280 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (394)
+++..+.+..+. .+.....+..+|+++++.||-.+|.....+.+.
T Consensus 44 Da~hsl~D~~s~------~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 44 SLTDSFADTLAS------IINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp HHHHTTHHHHHH------HHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence 455555554332 222334445556666777777666544444433
No 13
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=38.08 E-value=35 Score=30.93 Aligned_cols=25 Identities=0% Similarity=0.026 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCC
Q 016144 323 SRPICLIAFLWICYTCSVFLLPTFY 347 (394)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (394)
.+.+.+++.+++-..++..++..+.
T Consensus 279 mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 279 MKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcC
Confidence 3456666666665555556555544
No 14
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=36.37 E-value=46 Score=30.46 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHhccCCCC
Q 016144 322 ASRPICLIAFLWICYTCSVFLLPTFY 347 (394)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (394)
..+.+.+++.+++-..++..++..+.
T Consensus 302 imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 34567777777777766666665543
No 15
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=30.85 E-value=1.6e+02 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=17.9
Q ss_pred HHHhhhcccCCcCCCcccccchhHHHHHHHH
Q 016144 302 FARMVMAEQKFNAGPFYLGKASRPICLIAFL 332 (394)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (394)
...+..+|+++++.||-.+|..+..+.+..+
T Consensus 51 ~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 51 LVVRYSLQPADDNHSFGHGKAESLAALAQSM 81 (283)
T ss_dssp HHHHHHTCCCCSSCSSCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 3444455666777787777655555544433
No 16
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=28.39 E-value=4.1e+02 Score=25.65 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=19.8
Q ss_pred chhhhHHHHHHHHHHHhccCCCCCCcc-cchHHHHHHHHHHHHHHHHHHHhhh
Q 016144 3 TQAYAGSQTLQSIILLCTGTNKDGGYF-APKWLFLCMYIGLTIIWAVLNTFAL 54 (394)
Q Consensus 3 s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~in~~g~ 54 (394)
|..++..+.-..+-.+.+ .+ ++......+..++.++.+.-...|+
T Consensus 213 SLGlg~~Qi~~Gl~~lfG-------i~~~~~~~qi~ii~vit~i~~~Sa~sGl 258 (539)
T 4ain_A 213 SLGLGALQIGAGLSAANI-------IEDPSDWTIVGIVSVLTLAFIFSAISGV 258 (539)
T ss_dssp HHHHHHHHHHHHHHHHC---------CCCSTTTTTHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhcC-------CCCCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555555555555432 33 3334444444444455555555555
No 17
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=20.84 E-value=61 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=18.7
Q ss_pred HHHHHHhccCCCCCCcccchHHHHHHHHHHHHHHHHHHHhh
Q 016144 13 QSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFA 53 (394)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g 53 (394)
..+..++. -+.+++..++....++++++++...+++.+|
T Consensus 44 ~gllrfYt--dds~GlKV~P~~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 44 SSILKLYT--DEANGFRVDSLVVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHhh--cCCCceEEcCeeehhhHHHHHHHHHHHHHhh
Confidence 34444443 2346677888888999999999999888876
Done!