Query 016145
Match_columns 394
No_of_seqs 120 out of 781
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1479 Nucleoside transporter 100.0 5E-77 1.1E-81 579.6 28.0 385 2-394 1-404 (406)
2 TIGR00939 2a57 Equilibrative N 100.0 5.1E-73 1.1E-77 570.3 30.2 363 25-393 1-432 (437)
3 PF01733 Nucleoside_tran: Nucl 100.0 2.7E-57 5.8E-62 439.0 -0.7 266 124-393 1-308 (309)
4 PF02487 CLN3: CLN3 protein; 100.0 2.3E-30 5E-35 255.0 19.4 345 22-392 2-394 (402)
5 KOG3880 Predicted small molecu 99.9 7.4E-26 1.6E-30 210.6 9.4 343 21-391 13-400 (409)
6 PRK11551 putative 3-hydroxyphe 98.4 2.1E-05 4.7E-10 78.3 19.7 298 57-389 53-364 (406)
7 TIGR00895 2A0115 benzoate tran 98.4 3.2E-05 6.9E-10 76.0 19.5 106 278-389 288-394 (398)
8 KOG4255 Uncharacterized conser 98.4 7E-06 1.5E-10 78.1 13.7 192 20-214 11-214 (439)
9 PRK10213 nepI ribonucleoside t 98.4 8.2E-05 1.8E-09 74.4 22.2 286 62-389 63-360 (394)
10 PRK10489 enterobactin exporter 98.3 3.9E-05 8.4E-10 77.0 19.0 303 57-389 55-368 (417)
11 PF07690 MFS_1: Major Facilita 98.3 8.4E-06 1.8E-10 78.8 12.9 322 35-385 11-351 (352)
12 PRK11663 regulatory protein Uh 98.3 6.8E-05 1.5E-09 75.9 20.0 102 57-171 61-167 (434)
13 TIGR00881 2A0104 phosphoglycer 98.3 2.6E-05 5.6E-10 76.0 16.3 328 34-388 9-365 (379)
14 TIGR00900 2A0121 H+ Antiporter 98.3 4.3E-05 9.3E-10 74.1 17.3 307 57-389 37-357 (365)
15 TIGR00890 2A0111 Oxalate/Forma 98.3 5.3E-05 1.1E-09 73.7 17.7 335 20-388 4-350 (377)
16 TIGR00893 2A0114 d-galactonate 98.3 4.9E-05 1.1E-09 74.1 17.3 325 37-388 11-366 (399)
17 PRK03545 putative arabinose tr 98.2 0.00027 6E-09 70.2 22.7 306 43-389 32-349 (390)
18 TIGR00892 2A0113 monocarboxyla 98.2 7.3E-05 1.6E-09 76.3 17.7 107 278-388 279-388 (455)
19 PRK08633 2-acyl-glycerophospho 98.2 8.7E-05 1.9E-09 84.0 19.5 308 61-389 54-378 (1146)
20 TIGR00710 efflux_Bcr_CflA drug 98.2 0.00032 6.9E-09 68.9 20.8 325 33-389 18-356 (385)
21 TIGR00891 2A0112 putative sial 98.2 0.0011 2.3E-08 65.5 24.4 126 34-172 26-157 (405)
22 TIGR00879 SP MFS transporter, 98.1 0.00029 6.3E-09 70.7 20.4 104 58-171 75-183 (481)
23 COG2814 AraJ Arabinose efflux 98.1 0.00044 9.5E-09 68.9 20.3 293 62-390 56-356 (394)
24 PRK05122 major facilitator sup 98.1 0.00074 1.6E-08 67.1 21.2 336 13-387 10-356 (399)
25 PRK11273 glpT sn-glycerol-3-ph 98.0 0.0006 1.3E-08 69.4 19.9 95 62-165 71-170 (452)
26 cd06174 MFS The Major Facilita 98.0 0.0011 2.3E-08 63.6 20.5 298 33-389 12-321 (352)
27 PRK09874 drug efflux system pr 98.0 0.00035 7.5E-09 69.4 17.4 105 279-389 262-367 (408)
28 TIGR00885 fucP L-fucose:H+ sym 98.0 0.00045 9.7E-09 69.7 17.6 138 20-171 7-150 (410)
29 PRK11652 emrD multidrug resist 97.9 0.0015 3.2E-08 64.9 21.0 55 334-389 300-354 (394)
30 TIGR00883 2A0106 metabolite-pr 97.9 0.00043 9.4E-09 67.7 16.9 286 81-382 59-362 (394)
31 PRK12382 putative transporter; 97.8 0.004 8.7E-08 61.7 20.7 102 281-389 255-358 (392)
32 TIGR00886 2A0108 nitrite extru 97.7 0.0023 5E-08 62.4 18.2 106 34-151 15-122 (366)
33 TIGR00712 glpT glycerol-3-phos 97.7 0.0024 5.3E-08 64.6 18.8 124 35-169 42-172 (438)
34 PLN00028 nitrate transmembrane 97.7 0.0046 9.9E-08 63.6 20.8 21 279-299 292-312 (476)
35 TIGR00711 efflux_EmrB drug res 97.7 0.0026 5.7E-08 64.7 18.4 122 34-168 16-143 (485)
36 PRK10133 L-fucose transporter; 97.7 0.0048 1E-07 62.8 19.7 134 23-170 33-172 (438)
37 PRK15011 sugar efflux transpor 97.6 0.0031 6.8E-08 62.8 17.8 52 337-389 309-360 (393)
38 TIGR00898 2A0119 cation transp 97.6 0.013 2.8E-07 60.3 22.7 81 59-152 132-213 (505)
39 PRK15402 multidrug efflux syst 97.6 0.0068 1.5E-07 60.4 19.5 54 334-388 310-363 (406)
40 COG0738 FucP Fucose permease [ 97.5 0.00069 1.5E-08 67.0 10.9 140 13-167 10-156 (422)
41 PRK12307 putative sialic acid 97.5 0.019 4.1E-07 57.5 21.3 115 42-169 40-160 (426)
42 PF05977 MFS_3: Transmembrane 97.5 0.0082 1.8E-07 62.6 18.9 331 19-389 9-363 (524)
43 PRK10642 proline/glycine betai 97.5 0.016 3.4E-07 59.8 20.6 99 69-172 72-175 (490)
44 TIGR00899 2A0120 sugar efflux 97.5 0.0094 2E-07 58.2 18.0 54 335-389 290-343 (375)
45 TIGR00792 gph sugar (Glycoside 97.4 0.08 1.7E-06 53.1 24.6 105 280-389 262-374 (437)
46 PRK03699 putative transporter; 97.4 0.0073 1.6E-07 60.1 16.7 95 61-168 49-148 (394)
47 PRK10091 MFS transport protein 97.4 0.042 9.2E-07 54.4 21.8 116 42-170 25-146 (382)
48 PRK10504 putative transporter; 97.3 0.012 2.6E-07 60.0 17.6 52 338-389 358-409 (471)
49 TIGR01299 synapt_SV2 synaptic 97.3 0.035 7.6E-07 60.3 21.7 183 21-216 165-360 (742)
50 PRK11043 putative transporter; 97.3 0.063 1.4E-06 53.3 22.0 110 29-151 15-126 (401)
51 TIGR00887 2A0109 phosphate:H+ 97.3 0.1 2.3E-06 53.8 24.1 109 57-172 59-172 (502)
52 PRK14995 methyl viologen resis 97.3 0.013 2.9E-07 60.3 17.4 56 334-389 352-407 (495)
53 PRK06814 acylglycerophosphoeth 97.3 0.01 2.2E-07 67.6 17.6 256 120-389 108-390 (1140)
54 PRK09556 uhpT sugar phosphate 97.2 0.0073 1.6E-07 61.7 14.2 122 42-171 51-178 (467)
55 PRK11102 bicyclomycin/multidru 97.2 0.021 4.6E-07 56.0 16.9 100 59-171 31-135 (377)
56 COG2271 UhpC Sugar phosphate p 97.2 0.034 7.4E-07 55.6 17.7 316 37-388 46-398 (448)
57 TIGR02718 sider_RhtX_FptX side 97.1 0.091 2E-06 52.1 21.2 28 22-49 3-30 (390)
58 TIGR02332 HpaX 4-hydroxyphenyl 97.1 0.13 2.7E-06 51.8 22.4 118 42-172 30-153 (412)
59 PRK10077 xylE D-xylose transpo 97.1 0.15 3.2E-06 51.8 23.1 110 58-170 59-175 (479)
60 PRK03893 putative sialic acid 97.1 0.041 8.9E-07 56.3 18.9 119 41-172 41-165 (496)
61 PF06609 TRI12: Fungal trichot 97.1 0.044 9.5E-07 57.8 19.0 103 282-389 356-461 (599)
62 PRK10473 multidrug efflux syst 97.1 0.08 1.7E-06 52.4 20.0 107 32-151 15-123 (392)
63 TIGR00901 2A0125 AmpG-related 97.1 0.018 3.9E-07 56.2 15.0 41 334-374 310-350 (356)
64 TIGR00896 CynX cyanate transpo 97.0 0.044 9.5E-07 53.5 17.2 115 42-170 22-141 (355)
65 PRK03633 putative MFS family t 97.0 0.075 1.6E-06 52.5 18.9 71 57-140 44-114 (381)
66 PRK11128 putative 3-phenylprop 96.9 0.032 7E-07 55.3 15.5 56 332-388 292-348 (382)
67 PRK15403 multidrug efflux syst 96.9 0.34 7.5E-06 48.7 22.8 99 60-171 57-160 (413)
68 PRK11902 ampG muropeptide tran 96.8 0.26 5.6E-06 49.1 21.5 136 24-172 3-151 (402)
69 TIGR00902 2A0127 phenyl propri 96.8 0.047 1E-06 54.1 15.6 99 280-389 245-349 (382)
70 TIGR00897 2A0118 polyol permea 96.8 0.14 3.1E-06 51.1 19.1 105 280-389 262-370 (402)
71 TIGR00894 2A0114euk Na(+)-depe 96.8 0.066 1.4E-06 54.5 16.7 101 59-170 81-186 (465)
72 PF11700 ATG22: Vacuole efflux 96.7 0.19 4.1E-06 51.9 19.7 312 56-383 69-427 (477)
73 PRK09669 putative symporter Ya 96.7 0.33 7.2E-06 49.1 21.4 56 334-389 320-382 (444)
74 PRK11646 multidrug resistance 96.6 0.47 1E-05 47.4 21.7 53 336-388 300-352 (400)
75 PF13347 MFS_2: MFS/sugar tran 96.5 0.16 3.6E-06 51.1 17.5 61 331-391 313-380 (428)
76 PRK09705 cynX putative cyanate 96.5 0.17 3.7E-06 50.4 17.0 132 24-169 13-150 (393)
77 PRK11195 lysophospholipid tran 96.4 0.63 1.4E-05 46.4 20.8 79 57-151 41-120 (393)
78 TIGR00882 2A0105 oligosacchari 96.3 0.22 4.7E-06 49.5 16.7 36 332-367 306-341 (396)
79 TIGR00903 2A0129 major facilit 96.3 0.38 8.1E-06 47.7 18.2 158 36-214 7-169 (368)
80 PRK11010 ampG muropeptide tran 96.3 0.44 9.6E-06 49.2 19.3 138 22-172 14-164 (491)
81 KOG2533 Permease of the major 96.1 0.13 2.8E-06 53.2 14.5 226 56-300 83-334 (495)
82 PRK09952 shikimate transporter 96.0 0.57 1.2E-05 47.4 18.2 90 81-172 88-182 (438)
83 PRK10054 putative transporter; 95.9 0.52 1.1E-05 47.0 17.6 96 63-171 52-152 (395)
84 TIGR01272 gluP glucose/galacto 95.9 0.12 2.7E-06 50.0 12.6 54 119-172 9-67 (310)
85 KOG2504 Monocarboxylate transp 95.9 0.2 4.4E-06 52.1 14.5 100 280-385 338-440 (509)
86 PRK09848 glucuronide transport 95.8 0.21 4.5E-06 50.7 13.9 117 20-147 228-346 (448)
87 PRK09528 lacY galactoside perm 95.7 0.12 2.5E-06 51.9 11.9 35 334-368 316-350 (420)
88 KOG3764 Vesicular amine transp 95.6 0.057 1.2E-06 53.7 8.4 94 60-163 109-203 (464)
89 KOG2532 Permease of the major 95.5 1.5 3.3E-05 45.1 19.1 105 57-172 76-181 (466)
90 TIGR00889 2A0110 nucleoside tr 95.5 0.3 6.5E-06 49.2 13.9 108 279-389 255-365 (418)
91 PRK10429 melibiose:sodium symp 95.5 3.2 7E-05 42.4 21.7 135 30-170 16-162 (473)
92 PF13347 MFS_2: MFS/sugar tran 95.3 0.39 8.4E-06 48.4 13.9 118 19-147 224-342 (428)
93 PRK15034 nitrate/nitrite trans 95.0 3.3 7.2E-05 42.5 19.6 75 69-151 85-159 (462)
94 COG2211 MelB Na+/melibiose sym 94.9 2.8 6E-05 43.0 18.5 254 120-390 112-391 (467)
95 KOG2563 Permease of the major 94.9 1.7 3.7E-05 44.1 16.5 126 16-152 41-173 (480)
96 TIGR00792 gph sugar (Glycoside 94.8 1.3 2.8E-05 44.3 16.2 110 25-146 227-337 (437)
97 TIGR01301 GPH_sucrose GPH fami 94.8 3.9 8.4E-05 42.2 19.6 150 17-171 3-172 (477)
98 PRK11462 putative transporter; 94.5 6.3 0.00014 40.3 22.1 144 23-171 12-166 (460)
99 PRK09669 putative symporter Ya 94.4 0.44 9.5E-06 48.2 11.7 77 59-146 269-345 (444)
100 PRK09584 tppB putative tripept 94.3 7.7 0.00017 40.1 22.4 58 331-388 380-437 (500)
101 PRK10406 alpha-ketoglutarate t 94.2 6.7 0.00015 39.4 22.3 100 69-173 78-182 (432)
102 PRK10429 melibiose:sodium symp 94.1 0.35 7.7E-06 49.5 10.4 120 20-147 231-351 (473)
103 KOG2325 Predicted transporter/ 93.8 1.2 2.6E-05 45.8 13.2 129 41-178 56-192 (488)
104 PRK15075 citrate-proton sympor 93.7 8.4 0.00018 38.7 22.4 97 71-172 73-174 (434)
105 TIGR00806 rfc RFC reduced fola 93.6 2.4 5.1E-05 43.8 14.8 119 42-173 48-172 (511)
106 PRK10207 dipeptide/tripeptide 93.1 12 0.00026 38.6 20.7 58 332-389 378-435 (489)
107 TIGR00805 oat sodium-independe 92.8 9.3 0.0002 40.9 18.7 128 42-172 55-229 (633)
108 cd06174 MFS The Major Facilita 92.4 0.61 1.3E-05 44.3 8.5 109 276-391 35-145 (352)
109 PRK09848 glucuronide transport 92.1 14 0.00031 37.1 24.8 54 336-389 322-382 (448)
110 PF03825 Nuc_H_symport: Nucleo 91.5 11 0.00024 37.9 16.5 50 340-389 308-358 (400)
111 PRK10504 putative transporter; 91.0 3 6.6E-05 42.3 12.3 35 63-100 306-340 (471)
112 TIGR00902 2A0127 phenyl propri 91.0 6.5 0.00014 38.8 14.3 98 62-172 248-350 (382)
113 PRK03699 putative transporter; 90.7 4.1 8.8E-05 40.3 12.6 44 42-88 228-272 (394)
114 PRK10213 nepI ribonucleoside t 90.3 1.6 3.4E-05 43.5 9.3 104 280-389 60-164 (394)
115 PRK11646 multidrug resistance 89.8 0.75 1.6E-05 45.9 6.4 141 242-389 13-155 (400)
116 TIGR00924 yjdL_sub1_fam amino 89.2 29 0.00062 35.6 22.4 60 331-390 379-438 (475)
117 TIGR00900 2A0121 H+ Antiporter 89.1 1.3 2.9E-05 42.4 7.4 113 276-390 35-149 (365)
118 PRK12382 putative transporter; 89.1 1.4 3.1E-05 43.4 7.8 148 242-389 18-168 (392)
119 TIGR00879 SP MFS transporter, 89.0 2.6 5.6E-05 42.0 9.7 111 276-389 72-183 (481)
120 PRK09528 lacY galactoside perm 88.8 4.6 0.0001 40.3 11.3 77 63-152 271-348 (420)
121 PRK05122 major facilitator sup 88.6 1.3 2.8E-05 43.8 7.1 149 241-389 17-168 (399)
122 TIGR00898 2A0119 cation transp 88.4 3.9 8.5E-05 41.9 10.7 112 274-391 126-238 (505)
123 PRK09584 tppB putative tripept 88.3 8 0.00017 40.0 13.0 86 81-167 344-434 (500)
124 PF07690 MFS_1: Major Facilita 87.2 2.1 4.5E-05 40.9 7.4 105 280-391 37-143 (352)
125 KOG0569 Permease of the major 87.2 40 0.00087 34.9 18.5 143 58-216 64-210 (485)
126 PTZ00207 hypothetical protein; 87.1 5.3 0.00012 42.4 10.9 82 81-166 85-170 (591)
127 TIGR00788 fbt folate/biopterin 86.8 40 0.00086 34.5 20.4 55 335-389 353-407 (468)
128 PRK11462 putative transporter; 86.8 7 0.00015 39.9 11.4 54 32-88 240-294 (460)
129 PLN00028 nitrate transmembrane 86.4 4.9 0.00011 41.2 10.0 31 123-153 351-381 (476)
130 TIGR00895 2A0115 benzoate tran 85.8 2.8 6.2E-05 40.6 7.6 105 279-389 56-161 (398)
131 TIGR00710 efflux_Bcr_CflA drug 85.7 3.8 8.2E-05 39.8 8.5 105 279-389 44-149 (385)
132 TIGR00886 2A0108 nitrite extru 85.4 3.4 7.3E-05 40.0 8.0 105 279-389 41-146 (366)
133 KOG1330 Sugar transporter/spin 85.4 7.1 0.00015 39.9 10.1 137 56-217 70-215 (493)
134 PRK11551 putative 3-hydroxyphe 85.4 13 0.00027 36.7 12.2 82 58-152 259-341 (406)
135 PRK10489 enterobactin exporter 85.1 14 0.00031 36.6 12.5 80 60-152 265-345 (417)
136 TIGR00889 2A0110 nucleoside tr 85.0 14 0.0003 37.2 12.4 103 61-172 258-366 (418)
137 TIGR00880 2_A_01_02 Multidrug 84.7 2.3 5E-05 34.2 5.5 56 334-389 52-107 (141)
138 KOG0569 Permease of the major 84.6 4.7 0.0001 41.7 8.7 147 57-211 308-455 (485)
139 PRK11102 bicyclomycin/multidru 84.5 16 0.00035 35.4 12.4 34 60-96 236-269 (377)
140 TIGR00893 2A0114 d-galactonate 84.4 3.1 6.8E-05 40.0 7.2 105 279-390 33-139 (399)
141 TIGR00887 2A0109 phosphate:H+ 84.4 3.8 8.1E-05 42.2 8.1 109 279-390 60-172 (502)
142 PF03209 PUCC: PUCC protein; 83.2 54 0.0012 33.0 19.8 106 278-388 247-360 (403)
143 KOG3098 Uncharacterized conser 83.1 45 0.00097 34.3 15.0 52 121-172 103-158 (461)
144 TIGR00891 2A0112 putative sial 83.0 6.6 0.00014 38.3 8.9 106 279-390 51-157 (405)
145 PRK11273 glpT sn-glycerol-3-ph 82.9 8 0.00017 39.1 9.7 101 280-382 68-169 (452)
146 PRK09874 drug efflux system pr 81.8 8.9 0.00019 37.7 9.4 104 279-389 58-162 (408)
147 TIGR00712 glpT glycerol-3-phos 81.6 11 0.00023 38.0 10.0 51 336-386 121-171 (438)
148 TIGR00892 2A0113 monocarboxyla 81.1 11 0.00024 38.3 9.9 33 120-152 333-366 (455)
149 PF07672 MFS_Mycoplasma: Mycop 80.7 18 0.00039 34.2 10.2 217 155-381 10-251 (267)
150 PRK10077 xylE D-xylose transpo 80.6 21 0.00046 36.0 11.9 44 59-105 311-354 (479)
151 PRK03633 putative MFS family t 80.4 5.3 0.00011 39.3 7.2 108 276-389 42-150 (381)
152 PRK09556 uhpT sugar phosphate 80.3 41 0.00088 34.1 13.8 53 32-87 270-324 (467)
153 PF03825 Nuc_H_symport: Nucleo 80.0 14 0.0003 37.2 10.1 138 63-213 252-397 (400)
154 PRK10207 dipeptide/tripeptide 79.9 37 0.00081 35.0 13.5 84 85-168 344-432 (489)
155 PRK10091 MFS transport protein 79.8 7.4 0.00016 38.3 8.0 103 279-387 42-145 (382)
156 TIGR00880 2_A_01_02 Multidrug 79.8 16 0.00035 29.0 8.9 93 63-168 7-104 (141)
157 COG2223 NarK Nitrate/nitrite t 79.3 39 0.00085 34.1 12.6 197 1-207 193-401 (417)
158 PRK10054 putative transporter; 79.1 6.2 0.00014 39.2 7.3 144 241-391 9-154 (395)
159 PRK08633 2-acyl-glycerophospho 78.0 38 0.00082 38.6 14.0 83 58-153 273-356 (1146)
160 KOG0255 Synaptic vesicle trans 78.0 88 0.0019 32.2 17.8 83 59-154 123-206 (521)
161 PRK10473 multidrug efflux syst 77.9 27 0.00059 34.2 11.4 42 60-104 245-286 (392)
162 PRK09705 cynX putative cyanate 77.8 71 0.0015 31.5 14.4 63 35-102 220-285 (393)
163 PF06813 Nodulin-like: Nodulin 77.6 11 0.00023 35.5 7.8 145 57-214 40-185 (250)
164 PRK11663 regulatory protein Uh 77.3 11 0.00023 38.0 8.4 104 279-388 62-166 (434)
165 KOG0255 Synaptic vesicle trans 76.7 15 0.00032 37.9 9.4 113 273-391 116-229 (521)
166 TIGR02332 HpaX 4-hydroxyphenyl 76.6 9.4 0.0002 38.2 7.7 104 280-389 48-152 (412)
167 PRK15403 multidrug efflux syst 76.0 11 0.00024 37.7 8.1 104 280-389 56-160 (413)
168 TIGR00924 yjdL_sub1_fam amino 75.9 58 0.0013 33.3 13.5 147 21-171 273-437 (475)
169 PRK03545 putative arabinose tr 75.8 14 0.0003 36.4 8.6 58 333-390 97-154 (390)
170 TIGR00894 2A0114euk Na(+)-depe 75.7 23 0.0005 35.8 10.4 107 279-389 80-187 (465)
171 TIGR00897 2A0118 polyol permea 75.6 10 0.00022 37.6 7.6 107 279-388 52-161 (402)
172 PRK15011 sugar efflux transpor 74.9 81 0.0018 31.0 13.9 17 194-210 374-390 (393)
173 PRK15462 dipeptide/tripeptide 74.2 1E+02 0.0022 32.1 14.6 139 20-159 268-416 (493)
174 PRK09952 shikimate transporter 74.1 37 0.0008 34.2 11.4 27 126-152 349-376 (438)
175 TIGR01272 gluP glucose/galacto 72.8 18 0.00039 34.8 8.4 96 59-168 183-281 (310)
176 KOG2325 Predicted transporter/ 71.9 16 0.00035 37.7 8.0 151 238-390 33-190 (488)
177 TIGR00881 2A0104 phosphoglycer 71.6 6.6 0.00014 37.7 5.0 101 279-386 34-136 (379)
178 PRK15402 multidrug efflux syst 70.5 83 0.0018 30.9 12.8 70 64-141 261-330 (406)
179 TIGR00711 efflux_EmrB drug res 70.2 16 0.00034 36.9 7.7 103 281-389 43-146 (485)
180 PRK11902 ampG muropeptide tran 69.7 52 0.0011 32.5 11.1 23 129-151 316-339 (402)
181 COG2814 AraJ Arabinose efflux 69.2 14 0.0003 37.2 6.7 141 239-386 13-154 (394)
182 PRK11195 lysophospholipid tran 69.0 11 0.00023 37.5 6.0 53 337-389 92-144 (393)
183 PF01306 LacY_symp: LacY proto 69.0 63 0.0014 32.7 11.4 173 22-213 222-403 (412)
184 TIGR01299 synapt_SV2 synaptic 68.9 14 0.00031 40.4 7.3 105 280-390 207-312 (742)
185 TIGR00901 2A0125 AmpG-related 68.6 26 0.00057 33.7 8.6 55 337-391 87-141 (356)
186 COG2211 MelB Na+/melibiose sym 68.5 1.5E+02 0.0032 30.6 14.8 129 34-175 250-380 (467)
187 KOG0254 Predicted transporter 68.1 1.3E+02 0.0028 31.0 14.1 82 57-151 92-173 (513)
188 PRK12307 putative sialic acid 67.2 29 0.00063 34.3 8.8 105 279-389 57-162 (426)
189 PRK11128 putative 3-phenylprop 66.8 1E+02 0.0022 30.2 12.4 77 63-152 249-325 (382)
190 TIGR00890 2A0111 Oxalate/Forma 65.6 64 0.0014 30.7 10.6 43 59-104 245-287 (377)
191 PRK11652 emrD multidrug resist 65.2 37 0.0008 33.3 9.0 103 280-388 48-151 (394)
192 TIGR00883 2A0106 metabolite-pr 62.7 54 0.0012 31.4 9.6 54 336-389 99-152 (394)
193 TIGR00899 2A0120 sugar efflux 62.2 1.5E+02 0.0032 28.4 12.6 26 126-151 294-320 (375)
194 PRK10642 proline/glycine betai 62.0 35 0.00076 34.9 8.4 29 63-94 295-323 (490)
195 KOG0252 Inorganic phosphate tr 61.9 76 0.0016 32.8 10.2 84 18-104 36-131 (538)
196 PRK15034 nitrate/nitrite trans 61.0 53 0.0011 33.8 9.3 105 281-387 76-181 (462)
197 PF00083 Sugar_tr: Sugar (and 60.6 1.6 3.4E-05 44.0 -1.9 113 276-391 47-160 (451)
198 PRK06814 acylglycerophosphoeth 60.1 28 0.0006 39.8 7.9 85 303-391 81-166 (1140)
199 PF11368 DUF3169: Protein of u 58.5 58 0.0013 30.4 8.5 24 151-174 10-33 (248)
200 PF01306 LacY_symp: LacY proto 58.3 32 0.0007 34.8 7.1 33 331-363 310-342 (412)
201 PRK11010 ampG muropeptide tran 58.1 1.1E+02 0.0024 31.4 11.3 40 130-169 330-370 (491)
202 KOG3762 Predicted transporter 57.5 44 0.00095 35.1 7.8 115 20-152 375-492 (618)
203 TIGR00882 2A0105 oligosacchari 57.3 1.3E+02 0.0028 29.4 11.4 73 67-152 267-340 (396)
204 KOG2532 Permease of the major 57.1 66 0.0014 33.1 9.3 183 21-217 259-456 (466)
205 PF03209 PUCC: PUCC protein; 57.1 2.2E+02 0.0048 28.7 13.7 144 58-213 248-400 (403)
206 PRK03893 putative sialic acid 55.4 59 0.0013 32.9 8.7 104 280-389 60-164 (496)
207 KOG4686 Predicted sugar transp 54.5 2.2E+02 0.0047 27.9 12.8 55 14-68 258-315 (459)
208 TIGR00885 fucP L-fucose:H+ sym 50.7 54 0.0012 32.8 7.4 57 334-390 95-151 (410)
209 PRK10406 alpha-ketoglutarate t 49.9 47 0.001 33.3 6.8 55 335-389 126-180 (432)
210 KOG0254 Predicted transporter 49.6 71 0.0015 33.0 8.3 106 279-390 93-199 (513)
211 PRK14995 methyl viologen resis 48.9 86 0.0019 32.1 8.7 81 303-389 70-151 (495)
212 PRK15075 citrate-proton sympor 48.7 1.4E+02 0.003 29.9 10.0 53 337-389 121-173 (434)
213 PRK11043 putative transporter; 47.9 1.1E+02 0.0023 30.1 8.9 132 248-386 15-147 (401)
214 PF05978 UNC-93: Ion channel r 45.5 1.5E+02 0.0033 25.6 8.4 108 275-392 41-148 (156)
215 TIGR00896 CynX cyanate transpo 44.3 1.8E+02 0.0039 27.8 9.8 41 58-101 236-277 (355)
216 TIGR01301 GPH_sucrose GPH fami 44.2 3.3E+02 0.0072 28.1 12.1 91 57-150 308-410 (477)
217 KOG3098 Uncharacterized conser 42.6 4E+02 0.0087 27.5 12.2 38 119-156 352-390 (461)
218 COG0738 FucP Fucose permease [ 40.0 1.3E+02 0.0029 30.4 7.9 131 23-171 244-378 (422)
219 PRK11404 putative PTS system 38.2 66 0.0014 33.3 5.8 44 129-175 380-424 (482)
220 TIGR00806 rfc RFC reduced fola 38.0 1.2E+02 0.0025 31.7 7.4 101 280-391 71-172 (511)
221 PRK10133 L-fucose transporter; 37.9 1E+02 0.0022 31.2 7.1 106 278-389 64-173 (438)
222 PF05977 MFS_3: Transmembrane 36.4 5.2E+02 0.011 27.0 12.3 83 57-152 257-340 (524)
223 KOG2504 Monocarboxylate transp 35.4 1.3E+02 0.0028 31.4 7.5 131 24-167 299-440 (509)
224 TIGR00805 oat sodium-independe 35.1 63 0.0014 34.6 5.3 54 336-389 175-228 (633)
225 TIGR00903 2A0129 major facilit 35.0 1.2E+02 0.0025 29.9 6.9 58 333-391 79-136 (368)
226 PRK10478 putative PTS system f 34.9 26 0.00056 34.7 2.1 43 129-174 254-297 (359)
227 TIGR02718 sider_RhtX_FptX side 34.6 4.4E+02 0.0095 25.6 11.7 24 69-95 259-282 (390)
228 PF06912 DUF1275: Protein of u 34.2 3.4E+02 0.0074 24.2 9.9 110 83-208 75-184 (209)
229 COG2270 Permeases of the major 32.3 5.6E+02 0.012 26.2 17.6 127 10-146 6-144 (438)
230 KOG2533 Permease of the major 32.0 6E+02 0.013 26.4 12.3 59 23-85 276-337 (495)
231 KOG2615 Permease of the major 32.0 5.6E+02 0.012 26.1 19.8 53 314-370 337-389 (451)
232 KOG2816 Predicted transporter 27.9 2E+02 0.0042 29.7 7.2 50 342-391 119-170 (463)
233 PF11700 ATG22: Vacuole efflux 24.4 7.3E+02 0.016 25.5 10.7 122 35-166 296-427 (477)
234 PF04276 DUF443: Protein of un 23.0 3.8E+02 0.0082 24.1 7.4 20 233-252 135-154 (199)
No 1
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=100.00 E-value=5e-77 Score=579.64 Aligned_cols=385 Identities=40% Similarity=0.644 Sum_probs=334.8
Q ss_pred cccccCCCCCCCCCCcccchhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCC
Q 016145 2 EAAKSAGDQPVEPRDTYKVAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWG 81 (394)
Q Consensus 2 ~~~~~~~~~~~~p~d~~~~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (394)
++|+.+.+++ +|||+++.+|+.|+++|+|+|+|||+++|+.|||+++|++++..+.|+..|++.+.+..+++..+ .
T Consensus 1 ~~~~~~~~~~-~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~---n 76 (406)
T KOG1479|consen 1 QQDEVELDSP-EPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLL---N 76 (406)
T ss_pred CCccccccCC-CcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3566667778 99999999999999999999999999999999999999988766666666655555555554444 3
Q ss_pred cccCcceehhHHHHHHHHHHHHHhhhhccc--ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhc
Q 016145 82 SKLSYRLRMNLGFSMFALSLLVTPIIDWAR--NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAG 159 (394)
Q Consensus 82 ~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G 159 (394)
-+.+.|.|...+..+....++++++++... .+.+...+|.++|++++..|.++|+.|||++|+++.||+||+||+++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G 156 (406)
T KOG1479|consen 77 AFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG 156 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc
Confidence 334444555556555555555555555544 667889999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhcc-------c-----
Q 016145 160 TASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDD-------A----- 227 (394)
Q Consensus 160 ~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~-------~----- 227 (394)
|++||+++|++|+++|++.+| .++++.+||.++.+++++|.++|..++|+|++|+|.+++.++ +
T Consensus 157 ~a~aG~l~Sl~~i~tka~~~~----~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~ 232 (406)
T KOG1479|consen 157 QALAGTLTSLLRILTKAAFSD----SRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDS 232 (406)
T ss_pred chhHhHHHHHHHHHHHHhcCC----CCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhccccccccccccccccc
Confidence 999999999999999999854 349999999999999999999999999999999997654321 1
Q ss_pred --cccchhHHHHHHHhhHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHH-HhhHHhhhhhhhcccccccch
Q 016145 228 --LSSRQAIWRVGRRIRLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITV-YNVSDFVGKSLTAVYVPKSIK 304 (394)
Q Consensus 228 --~~~~~~~~~v~k~i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~-fn~gD~iGR~~~~~~~~~~~~ 304 (394)
++++.+.|+++||+++++++++++|++|+++|||+..+.++++..++|++.+...+ ||++|++||.++.+.+++++|
T Consensus 233 ~~~~~~~~~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r 312 (406)
T KOG1479|consen 233 SLSNEDDSLWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPR 312 (406)
T ss_pred ccccccchHHHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCc
Confidence 11234689999999999999999999999999999998766666679999888888 999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--CCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHH
Q 016145 305 KAAWACTGRLVFYPLFAACLH--GPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGL 382 (394)
Q Consensus 305 ~l~i~s~~R~~fiplf~~~~~--~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi 382 (394)
++++++++|++|+|+|.+||+ .|.++++|+++++++.++|+||||++++.|+++|++++++|||.||++|++++..|+
T Consensus 313 ~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl 392 (406)
T KOG1479|consen 313 KLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGL 392 (406)
T ss_pred eehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC
Q 016145 383 VGGSVLGWVWMI 394 (394)
Q Consensus 383 ~~Gs~~s~~~~~ 394 (394)
++|++++++|.+
T Consensus 393 ~~G~~~s~l~~~ 404 (406)
T KOG1479|consen 393 ALGSLLSWVFVI 404 (406)
T ss_pred HHhhHHHHHHHH
Confidence 999999999863
No 2
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=5.1e-73 Score=570.34 Aligned_cols=363 Identities=32% Similarity=0.524 Sum_probs=318.4
Q ss_pred HHHHhhhchhHHHHhhcchHhhhcccCCC--C-------------ccchhhhHhHHHHHHHHHHHHHhccCCcccCccee
Q 016145 25 HFLLGAGNLLPWNAFITAVDYFGYLYPAK--H-------------VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLR 89 (394)
Q Consensus 25 f~l~G~~~llpwN~~ita~~yf~~~~~~~--~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 89 (394)
|+++|+|+|+|||+++||.|||+++|+++ + ++++++++.++++++..+.+... .+|+|.+.|
T Consensus 1 f~llG~~~L~pWN~fitA~~Yf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~---~~~i~~~~R 77 (437)
T TIGR00939 1 FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLLFNSLNLFL---IFRIPVTVR 77 (437)
T ss_pred CEEEeeeccchhHHHhhHHHHHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCccch
Confidence 57899999999999999999999887643 1 35567779999999999999999 999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchhhHHHH
Q 016145 90 MNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSI 169 (394)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~ 169 (394)
+..++++.++.+++..++.. .+.++..+|+++|+++++.|+++|+.|++.+|+++.||++|+|++++|||+||+++++
T Consensus 78 i~~~lv~~~~~~~~~~~l~~--~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~ 155 (437)
T TIGR00939 78 LLGGLVILLVVVILVMVLVK--VQTSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSL 155 (437)
T ss_pred hHHHHHHHHHHHHHHhheee--ecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHH
Confidence 99998876666555544322 2345667999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhh----------------cc-------
Q 016145 170 LRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLI----------------DD------- 226 (394)
Q Consensus 170 l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~----------------~~------- 226 (394)
+|++++++.+|++ ++++++++||+++++++++|+++|..++|+|++|+|.++++ ||
T Consensus 156 ~~ii~~a~~~~~~-~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (437)
T TIGR00939 156 AMILVKASGNDSH-GLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHG 234 (437)
T ss_pred HHHHHHHhcCCcc-chhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccccccccccccccccccccccccc
Confidence 9999999887765 78999999999999999999999999999999998865321 01
Q ss_pred -c---------------------cccchhHHHHHHHhhHhHHHHHHHHhhhhccccceeeeeccccc-CCC-chHHHHHH
Q 016145 227 -A---------------------LSSRQAIWRVGRRIRLPAFGVILIYIVTLSIFPGFIGEDLESKL-LRD-WYPVLLIT 282 (394)
Q Consensus 227 -~---------------------~~~~~~~~~v~k~i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~-~~~-w~~~~~~~ 282 (394)
+ ++.+.++++++||+|++++++|++|++|+++|||++.+..+++. .++ |+++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~ 314 (437)
T TIGR00939 235 GDQPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFL 314 (437)
T ss_pred cccccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHH
Confidence 0 00135788999999999999999999999999999987544432 345 59999999
Q ss_pred HHhhHHhhhhhhhcccccccch--hHHHHHHHHHHHHHHHHHHhcCCC-----CCccchhHHHHHHHHhhccccchheee
Q 016145 283 VYNVSDFVGKSLTAVYVPKSIK--KAAWACTGRLVFYPLFAACLHGPK-----WLKTEVPVLVLTSMLGFTNGYLTSVIM 355 (394)
Q Consensus 283 ~fn~gD~iGR~~~~~~~~~~~~--~l~i~s~~R~~fiplf~~~~~~~~-----~~~~d~~~~il~~l~gltnGy~~t~~m 355 (394)
+||+||++||.++.++.+|++| ++++++++|++|||+|++||++|+ ++++|++++++++++|+||||+++++|
T Consensus 315 ~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m 394 (437)
T TIGR00939 315 LFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSM 394 (437)
T ss_pred HHHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999888776555 899999999999999999999642 689999999999999999999999999
Q ss_pred eecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016145 356 ILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWVWM 393 (394)
Q Consensus 356 i~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~~~ 393 (394)
+++|++++++|||.||++|++++..|+++||++++++-
T Consensus 395 ~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 395 CLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999863
No 3
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=2.7e-57 Score=439.03 Aligned_cols=266 Identities=33% Similarity=0.536 Sum_probs=4.0
Q ss_pred hHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHH
Q 016145 124 VASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCC 203 (394)
Q Consensus 124 li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~ 203 (394)
|+.+++.|.++|+.|+|.+|+++.+|++|+|++++|||+||++++++|+++++..+ +++.++++||++++++.++|
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~----~~~~~a~~yF~~a~~i~i~~ 76 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGS----DVKTSAFIYFIIAVLIVILC 76 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhh----ccchhhhhHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999864 37899999999999999999
Q ss_pred HHHHHhhccchHHHHHHHhh-----h---c-----cccc----------c--------chhHHHHHHHhhHhHHHHHHHH
Q 016145 204 CLGSNLLHKLPVMQQHYRLL-----I---D-----DALS----------S--------RQAIWRVGRRIRLPAFGVILIY 252 (394)
Q Consensus 204 ~~~~~~l~r~p~~~~~~~~~-----~---~-----~~~~----------~--------~~~~~~v~k~i~~~~~~~fl~f 252 (394)
+++|..+.|+|++|+|.+++ + | ++++ + ..++++++||+|+++++++++|
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~f 156 (309)
T PF01733_consen 77 IILYFILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLVF 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886544 0 0 0000 0 1145789999999999999999
Q ss_pred hhhhccccceeeeeccc--ccCCCchH-HHHHHHHhhHHhhhhhhhcccccc--cchhHHHHHHHHHHHHHHHHHHhcCC
Q 016145 253 IVTLSIFPGFIGEDLES--KLLRDWYP-VLLITVYNVSDFVGKSLTAVYVPK--SIKKAAWACTGRLVFYPLFAACLHGP 327 (394)
Q Consensus 253 ~vTl~vFPgv~~~~~~~--~~~~~w~~-~~~~~~fn~gD~iGR~~~~~~~~~--~~~~l~i~s~~R~~fiplf~~~~~~~ 327 (394)
++|+++||+++.....+ +..++||. ++++++||+||++||.++.++++| ++|++++++++|++|+|+|++||++|
T Consensus 157 ~vTl~~FP~it~~v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p 236 (309)
T PF01733_consen 157 FVTLSVFPGITSAVQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQP 236 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hheeeeccceeeeeeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999996543222 11133554 688999999999999999999987 78899999999999999999999863
Q ss_pred ------CCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016145 328 ------KWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWVWM 393 (394)
Q Consensus 328 ------~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~~~ 393 (394)
..++||++++++++++|+||||++|++|+++|++++++|||.||++|++++..|+++||++|+++.
T Consensus 237 ~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~~ 308 (309)
T PF01733_consen 237 RPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLLV 308 (309)
T ss_dssp ------------------------------HHHH--------------------------------------
T ss_pred ccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999999999999999999999999999999999874
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.97 E-value=2.3e-30 Score=254.96 Aligned_cols=345 Identities=17% Similarity=0.179 Sum_probs=260.2
Q ss_pred hhHHHHHhhhchhHHHHhhcch-Hhhhccc------------C------------CCCccchhhhHhHHHHHHHHHHHHH
Q 016145 22 YIIHFLLGAGNLLPWNAFITAV-DYFGYLY------------P------------AKHVEKVFSVAYMTSSLLVLVLVIC 76 (394)
Q Consensus 22 y~~f~l~G~~~llpwN~~ita~-~yf~~~~------------~------------~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (394)
|+.|+++|+.++.+|..+++|. |--+++. | ++-.+....++..+|.++..++.++
T Consensus 2 ~~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~ 81 (402)
T PF02487_consen 2 YVAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPF 81 (402)
T ss_pred hhHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHh
Confidence 6899999999999999999865 6665221 1 0001233678899999999999999
Q ss_pred hccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHH
Q 016145 77 WGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAV 156 (394)
Q Consensus 77 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~ 156 (394)
+ .||+|++.|+..+..++.+++++++.. ...+..++.+++.|+++|+.|.+++++++.+|++.+++|
T Consensus 82 f---i~~v~y~~Ri~~~~~l~~~g~l~va~~----------~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~~l~~w 148 (402)
T PF02487_consen 82 F---IHRVPYWIRILICVALSAAGMLLVAFS----------PSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKSSLSAW 148 (402)
T ss_pred h---hhhccchHHHHHHHHHHHHHHhheeec----------cchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCccccccc
Confidence 9 999999999999999998888877542 136789999999999999999999999999999999999
Q ss_pred HhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHH-HHHhhh-----cc----
Q 016145 157 FAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQ-HYRLLI-----DD---- 226 (394)
Q Consensus 157 ~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~-~~~~~~-----~~---- 226 (394)
.+|+|.||+++++.+...+.. .-+++... .+...+-.+..++|+.+.+.|-.++ ..+.++ |+
T Consensus 149 ssGTG~aGl~Ga~~y~~lT~~----g~s~~~tl----l~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (402)
T PF02487_consen 149 SSGTGGAGLVGALYYLGLTTL----GLSPRTTL----LIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLES 220 (402)
T ss_pred cCCcChhhHHHHHHHHHHHHh----CcCHHHHH----HHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccccccccc
Confidence 999999999999999955442 13444443 3333344445555665444332211 111100 00
Q ss_pred c----cc------cchhHHHHHHHhhHhHHHHHHHHhhhhccccceeeee---cccccCCCchHHHHHHHHhhHHhhhhh
Q 016145 227 A----LS------SRQAIWRVGRRIRLPAFGVILIYIVTLSIFPGFIGED---LESKLLRDWYPVLLITVYNVSDFVGKS 293 (394)
Q Consensus 227 ~----~~------~~~~~~~v~k~i~~~~~~~fl~f~vTl~vFPgv~~~~---~~~~~~~~w~~~~~~~~fn~gD~iGR~ 293 (394)
+ ++ ...+.++..|+..++++.++++|+.++.+-+|+..-. ....+..+.|+ ...++||+|.|++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~-~Y~~~YQ~GVFISRS 299 (402)
T PF02487_consen 221 ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYR-WYQLLYQLGVFISRS 299 (402)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHH-HHHHHHHHHHhhhhc
Confidence 0 00 0123455677777799999999999998888775421 11112234444 347899999999999
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHH
Q 016145 294 LTAVYVPKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIV 373 (394)
Q Consensus 294 ~~~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~ 373 (394)
...+.+. |++|++++++.+..-++ +.+...+++++.|..+++++.-|+..|-...+++....++++++|||.+.+.
T Consensus 300 S~~~~ri---r~lwils~LQ~~nl~~~-~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~ 375 (402)
T PF02487_consen 300 SLPFFRI---RRLWILSLLQVINLVFL-LLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGA 375 (402)
T ss_pred ceeeeeh---hhHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9887764 68999999998876544 3444457788888899999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016145 374 MILSLGIGLVGGSVLGWVW 392 (394)
Q Consensus 374 ~~~~l~~Gi~~Gs~~s~~~ 392 (394)
.+++.+.|+.+++++++.+
T Consensus 376 vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 376 VSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998753
No 5
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=99.93 E-value=7.4e-26 Score=210.56 Aligned_cols=343 Identities=15% Similarity=0.145 Sum_probs=254.4
Q ss_pred hhhHHHHHhhhchhHHHHhhcch-HhhhcccCCCC---------------ccchhhhHhHHHHHHHHHHHHHhccCCccc
Q 016145 21 AYIIHFLLGAGNLLPWNAFITAV-DYFGYLYPAKH---------------VEKVFSVAYMTSSLLVLVLVICWGGWGSKL 84 (394)
Q Consensus 21 ~y~~f~l~G~~~llpwN~~ita~-~yf~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (394)
.+++|+++|++++..|..+++|. |-..++-++.. -+.....+-++|+++..+...++ .||+
T Consensus 13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff---~~rf 89 (409)
T KOG3880|consen 13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFF---IHRF 89 (409)
T ss_pred cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhh---hhhc
Confidence 78999999999999999999865 66655543110 14566788999999999999999 9999
Q ss_pred CcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchh
Q 016145 85 SYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSG 164 (394)
Q Consensus 85 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sG 164 (394)
++..|+.....+...++.+++.. ...+.++..+.+.++++|+.|-+++++++.+|+.-...|++|+|-||
T Consensus 90 pf~~Ri~~~v~~sa~s~~lVafs----------~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~~i~~WSSGTGgAG 159 (409)
T KOG3880|consen 90 PFGFRIALVVLLSALSFFLVAFS----------NSVPMSLLGVVFASISSGLGEITFLALSSRYPSIVIAGWSSGTGGAG 159 (409)
T ss_pred ccchHHHHHHHHHhcceEEEEec----------cchhHHHhhhhhhhhcCCcceeehhhhhccCCCceeccccCCCCcch
Confidence 99999988877777666665431 13678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhc--------------ccc--
Q 016145 165 VLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLID--------------DAL-- 228 (394)
Q Consensus 165 v~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~--------------~~~-- 228 (394)
++++.-+...+-.. +-++|...++...+. .+-.++|+++.|.|-..+....+++ |+.
T Consensus 160 liGa~SYa~lT~~~---~~spk~Tlli~l~lP----~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~~~~~~a~e~~sv 232 (409)
T KOG3880|consen 160 LIGASSYAFLTSWA---NLSPKSTLLIMLFLP----ALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQYLPFEAAEEKSV 232 (409)
T ss_pred hhhhhHHHHHhhhc---CCChhhHHHHHHHHH----HHHHHHHHheeCCCccccCCCcCccceeccCCCCcccccccccC
Confidence 99999998443322 256777775555555 4446677777666644331111110 001
Q ss_pred cc-chhHHH---HHHHhhHhHHHHHHHHhhhhccccce----eeeecc----c-ccCCCchHHHHHHHHhhHHhhhhhhh
Q 016145 229 SS-RQAIWR---VGRRIRLPAFGVILIYIVTLSIFPGF----IGEDLE----S-KLLRDWYPVLLITVYNVSDFVGKSLT 295 (394)
Q Consensus 229 ~~-~~~~~~---v~k~i~~~~~~~fl~f~vTl~vFPgv----~~~~~~----~-~~~~~w~~~~~~~~fn~gD~iGR~~~ 295 (394)
++ +...++ .+|...++++.+.++|+-++.+--|+ .....+ + +...+||. ..||+|.|++|+..
T Consensus 233 ~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyq----vlYQlGVFiSRSS~ 308 (409)
T KOG3880|consen 233 PSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQ----VLYQLGVFISRSSI 308 (409)
T ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhh----eeeeeeEEEEeccc
Confidence 11 122333 34444558889999998877643333 221111 1 11246885 48999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHH
Q 016145 296 AVYVPKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMI 375 (394)
Q Consensus 296 ~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~ 375 (394)
++.+.| .+|.+.++|++..-.|++ .....+.++.+..+++++.-|+.+|-...+.+..-.++++|++||.|....+
T Consensus 309 ~~~~~p---~l~~LailQ~vNl~ff~~-~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs 384 (409)
T KOG3880|consen 309 NLFTMP---YLWLLAILQFVNLLFFLL-QAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVS 384 (409)
T ss_pred eEEech---HHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhhe
Confidence 988875 889999999887654433 3222345677788999999999999888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 016145 376 LSLGIGLVGGSVLGWV 391 (394)
Q Consensus 376 ~~l~~Gi~~Gs~~s~~ 391 (394)
.+.+.|+.+++.++.-
T Consensus 385 ~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 385 ISDSIGIFLAGLLALP 400 (409)
T ss_pred ecchhhHHHHHHHhcc
Confidence 9999999999998863
No 6
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.43 E-value=2.1e-05 Score=78.31 Aligned_cols=298 Identities=13% Similarity=0.098 Sum_probs=138.8
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
......+.+...+.....-.+ .+|+..|.-+..+..+..+..+..+.. ..++..++.-++.|++.+.
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~~~~ 119 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRL---ADRIGRKRILIVSVALFGLFSLATAQA----------WDFPSLLVARLLTGVGLGG 119 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHhhHHH
Confidence 344445556666666666666 777777665666655554444333321 1255556677778888777
Q ss_pred hchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 016145 137 VGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLH 211 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~ 211 (394)
......++.. .+|++. ++-...|..+++.++..+.... .+ ...+.. .|...+.+..+.+......++
T Consensus 120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 191 (406)
T PRK11551 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA---AG----DAAWRH-IFYVGGVGPLLLVPLLMRWLP 191 (406)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc----ccCHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 7666655444 566543 3334556666666655443221 11 111222 233333322233333334445
Q ss_pred cchHHHHHHHhhhccccccchhHHHHHH-----HhhHhHHHHHHH---HhhhhccccceeeeecccccCCCchHHHHHHH
Q 016145 212 KLPVMQQHYRLLIDDALSSRQAIWRVGR-----RIRLPAFGVILI---YIVTLSIFPGFIGEDLESKLLRDWYPVLLITV 283 (394)
Q Consensus 212 r~p~~~~~~~~~~~~~~~~~~~~~~v~k-----~i~~~~~~~fl~---f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~ 283 (394)
+.|..+. +++++++ ++...+..+| +.+...+..+.. +.......|-...+ ...++...-.....
T Consensus 192 ~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~g~s~~~~~~~~~~ 263 (406)
T PRK11551 192 ESRAFAQ--AAGAGKQ--RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG----QGLSRSQAGLVQIA 263 (406)
T ss_pred CChhHHh--ccCcchh--hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCChhhhhHHHHH
Confidence 5442211 1111111 1111111111 112111221221 11111123332211 11112222345678
Q ss_pred HhhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCC
Q 016145 284 YNVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTV 362 (394)
Q Consensus 284 fn~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v 362 (394)
++++..+|+....+...+ ++|+.......-.. +-+..+ .. .++.+...+..++.|+..+-..+..+...++..
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (406)
T PRK11551 264 FNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL-ASLAAL-AA----APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY 337 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHH-Hh----cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 889999999987664332 23333332221111 111111 11 122234445566667665444455555667777
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 363 PVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 363 ~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++++|..+..+.......|..+|..+.
T Consensus 338 p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 338 PTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred chhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 788888887777777777777776653
No 7
>TIGR00895 2A0115 benzoate transport.
Probab=98.39 E-value=3.2e-05 Score=75.95 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHHHhhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 278 VLLITVYNVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
......++++..+|+.+..+...+ ++|++......-.+.. +.+... .++.+...+..+++|+..|-.......
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (398)
T TIGR00895 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA--VLVGST----LFSPTLLLLLGAIAGFFVNGGQSGLYA 361 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH--HHHHHH----hhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999887654432 2332222222111111 111111 123344566777888887766666666
Q ss_pred ecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+..+..++++|..+-.+.......|..+|..+.
T Consensus 362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 777777888888887777777778877776653
No 8
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=7e-06 Score=78.11 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=131.9
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhcccCC-CCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPA-KHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFA 98 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~ 98 (394)
.....-.++|+|+...-|.+....+-.-...++ .+..++.+++.++.++...++.++.++..-+++.-.-|..-+.+..
T Consensus 11 ~t~llvalfG~gswa~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla~lgpLi~tllhk~~~~~i~~VPiif~ll~~a~ 90 (439)
T KOG4255|consen 11 LTHLLVALFGMGSWAGVNGLWVELPLLVKELPEGWSLPSYLSVVVQLANLGPLIVTLLHKGAPGTIPTVPIIFVLLLLAC 90 (439)
T ss_pred HHHHHHHHHccchHhhhcceeeehhHHHhhcCcccccchHHHHHHHHHcchhHHHHHHHhhCCCcCCCCCchhHHHHHHH
Confidence 455667789999988888877766655444443 4567899999999999887666655333333333322222222222
Q ss_pred HHHHHHhhhhcccccCCC---cchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHH
Q 016145 99 LSLLVTPIIDWARNYSGS---NGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSILRIITK 175 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~---~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~ 175 (394)
++-+.++ ..+++.++ ...-+..+.+.+..++.++..+..++...+++||.|.+++..|||+||++++++.++.-
T Consensus 91 v~~l~la---flW~~ts~V~g~~hS~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLSaLlPsllaLaQG 167 (439)
T KOG4255|consen 91 VCQLGLA---FLWHDTSPVFGALHSWAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLSALLPSLLALAQG 167 (439)
T ss_pred HHHHHHH---HHHhcchhhhcCcchHHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 3333332 22322221 11234556777888889999999999999999999999999999999999999988754
Q ss_pred Hh---CCCC-----CCCcchhhHHHHHHHHHHHHHHHHHHHhhccch
Q 016145 176 AS---LPQT-----PQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLP 214 (394)
Q Consensus 176 ~~---~~~~-----~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p 214 (394)
.. ++++ +--++.+..+||.+-..+...|.++|+.+.|++
T Consensus 168 tg~~~C~~n~t~~r~fP~rFs~s~FFl~l~~~~~~alaAF~vL~r~~ 214 (439)
T KOG4255|consen 168 TGRLECDLNGTPGRPFPPRFSVSTFFLALFAFTCAALAAFFVLYRLG 214 (439)
T ss_pred CCceeecCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32 2221 123578899999999999999999999887764
No 9
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.37 E-value=8.2e-05 Score=74.42 Aligned_cols=286 Identities=13% Similarity=0.140 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh
Q 016145 62 AYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~ 141 (394)
.+.+...+.+...-.+ .+|++.|.-+..+..+..+..+..... ..++..++.-.+.|++.+......
T Consensus 63 ~~~~~~~~~~~~~g~l---~Dr~grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~~g~~~~~~ 129 (394)
T PRK10213 63 VTAFVAMFASLFITQT---IQATDRRYVVILFAVLLTLSCLLVSFA----------NSFSLLLIGRACLGLALGGFWAMS 129 (394)
T ss_pred HHHHHHHHHHHHHHHH---hcccCcHHHHHHHHHHHHHHHHHHHHH----------ChHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455555555555566 788777654556666655544443321 125556666677888877776666
Q ss_pred hhhcC-CCCHHH----HHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHH-HhhccchH
Q 016145 142 IGSAG-KLPKQY----MQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGS-NLLHKLPV 215 (394)
Q Consensus 142 ~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~-~~l~r~p~ 215 (394)
.++.+ .+|++. .+-+..+.+++.+++..+--..... .+ +.. .|...+ ++.+++.+.. ...++.|
T Consensus 130 ~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-----~g--w~~-~f~~~~-~l~~~~~l~~~~~~p~~~- 199 (394)
T PRK10213 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-----IG--WRN-VFNAAA-VMGVLCIFWIIKSLPSLP- 199 (394)
T ss_pred HHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cC--HHH-HHHHHH-HHHHHHHHHHHHHCCCCC-
Confidence 66643 566542 3334555555555544444322111 11 222 222222 2222222211 1122111
Q ss_pred HHHHHHhhhccccccchhHHHHHHH--hhHhHHHHHHHHhhh---hccccceeeeecccccCCCchHHHHHHHHhhHHhh
Q 016145 216 MQQHYRLLIDDALSSRQAIWRVGRR--IRLPAFGVILIYIVT---LSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFV 290 (394)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~k~--i~~~~~~~fl~f~vT---l~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~i 290 (394)
+ ++++..++.++++|+ .|...+..++.+... ...+|....+ + ...+....-.....+.++..+
T Consensus 200 --------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~-~g~s~~~~g~~~~~~~~~~ii 267 (394)
T PRK10213 200 --------G-EPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN--L-AGFGVDGLTLVLLSFGIASFV 267 (394)
T ss_pred --------c-ccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-cCCChhHHHHHHHHHHHHHHH
Confidence 0 111112223444433 444333333333322 1222222211 1 111111223457788899999
Q ss_pred hhhhhcccccccchhHHHH-HHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhH
Q 016145 291 GKSLTAVYVPKSIKKAAWA-CTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEI 369 (394)
Q Consensus 291 GR~~~~~~~~~~~~~l~i~-s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ 369 (394)
|+.+..+...+.+++..+. ...-.+.. +.+.... ++.+......+++|+..|..........-+.. +++++.
T Consensus 268 g~~~~~~l~~r~~~~~l~~~~~~~~~~~-~~l~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~ 340 (394)
T PRK10213 268 GTSLSSFILKRSVKLALAGAPLVLAVSA-LVLTLWG-----SDKIVATGVAIIWGLTFALVPVGWSTWITRSL-ADQAEK 340 (394)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHH-HHHHHHh-----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC-cccHHH
Confidence 9988766544333333222 22111110 1111111 12344456777788887766654443322333 345666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016145 370 AAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 370 ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++........+|..+|+.++
T Consensus 341 ~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 341 AGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665566677777777554
No 10
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.34 E-value=3.9e-05 Score=77.00 Aligned_cols=303 Identities=10% Similarity=-0.025 Sum_probs=135.7
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
......+.++..+.+...-.+ .+|++.+.-+..+..+..+........... ....++..++..++.|++.+.
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l---~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~ 126 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVL---ADRYDRKKLILLARGTCGLGFIGLALNAFL-----PEPSLLAIYLLGLWDGFFGSL 126 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHH---hhhcCCceEEEehHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHHH
Confidence 344455666666666665566 788777766666655555444443322111 112345555666667777776
Q ss_pred hchhhhhhcC-CCCHHHH----HHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 016145 137 VGGSLIGSAG-KLPKQYM----QAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLH 211 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~~~----~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~ 211 (394)
......++.. ..|++.. .....+.+++.+++..+.-...... +.+ ..|. +..+..+++.++...++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-----~~~---~~~~-~~~~~~~~~~~~~~~l~ 197 (417)
T PRK10489 127 GVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-----GVA---WNYG-LAAAGTFITLLPLLRLP 197 (417)
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-----hhH---HHHH-HHHHHHHHHHHHHHhCC
Confidence 6665555443 4565442 2333455555555554433221111 111 2222 22233333333333333
Q ss_pred cchHHHHHHHhhhccc-cccchhHHHHHHH--hhHhHHHHHHHH-h-hhhccccceeeeecccccCCCchHHHHHHHHhh
Q 016145 212 KLPVMQQHYRLLIDDA-LSSRQAIWRVGRR--IRLPAFGVILIY-I-VTLSIFPGFIGEDLESKLLRDWYPVLLITVYNV 286 (394)
Q Consensus 212 r~p~~~~~~~~~~~~~-~~~~~~~~~v~k~--i~~~~~~~fl~f-~-vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~ 286 (394)
+.+-.+ ++++++ ++.++..+.+.|+ .+...+..+... . .....+|....+..+ .+.-..-.....+.+
T Consensus 198 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g---~~~~~~g~~~~~~~~ 270 (417)
T PRK10489 198 ALPPPP----QPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQ---MGAAQIGLLYAAVPL 270 (417)
T ss_pred CCCCCC----cccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccC---CChhHhHHHHHHHHH
Confidence 221000 000000 0111122222221 122111111111 1 111233432221111 112122234567788
Q ss_pred HHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCch
Q 016145 287 SDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVA 365 (394)
Q Consensus 287 gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ 365 (394)
|..+|+....+...+ ++++.+.... .+....+++.... ++.+...+.++++|+..|........+..+..+++
T Consensus 271 g~~ig~~~~~~l~~~~~~~~~l~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 344 (417)
T PRK10489 271 GAALGALTSGWLAHSARPGLLMLLST--LGSFLAVGLFGLM----PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE 344 (417)
T ss_pred HHHHHHHHHHHhhhccCcchHHHHHH--HHHHHHHHHHHcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 898888887654332 2233322222 1111111111111 22234456777788877665554444444556667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 366 EGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 366 ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+|..+..+.......|..+|..+.
T Consensus 345 ~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 345 MLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHH
Confidence 788888777777777777776654
No 11
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.30 E-value=8.4e-06 Score=78.78 Aligned_cols=322 Identities=13% Similarity=0.131 Sum_probs=154.8
Q ss_pred HHHHhhcchH-hhhcccC-CCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc
Q 016145 35 PWNAFITAVD-YFGYLYP-AKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN 112 (394)
Q Consensus 35 pwN~~ita~~-yf~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
.++.+....+ ++.+++. +......+...+.++..+.+...-.+ .+|++.|.-+..+.++..++.++.. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~l~~~~~~~~~~~~~~~-~~---- 82 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYL---SDRFGRRRVLIIGLLLFALGSLLLA-FA---- 82 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHH---HHHS-HHHHHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCeeeEeehhhhhhhHHHHhh-hh----
Confidence 3444444445 6666553 22233445556777777777777777 7787766555555555555522222 11
Q ss_pred cCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCH-H---HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcch
Q 016145 113 YSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPK-Q---YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRT 187 (394)
Q Consensus 113 ~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~-~---~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~ 187 (394)
..++..++..++.|++.+........+.. .+|+ + ..+-...+.+++.+++..+. ....+ ..+ +
T Consensus 83 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~---~~l~~--~~~--~ 150 (352)
T PF07690_consen 83 -----SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLG---GFLIS--YFG--W 150 (352)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHH---HHCCC--HCH--H
T ss_pred -----hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchh---hhhhh--ccc--c
Confidence 11446677788899998888888877655 5665 3 33444444555554443333 22211 011 1
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHhhccchHHHHHHHhhhcc--ccccchh-HHHHHHH--hhHhHHHHHHH---Hhhhhcc
Q 016145 188 SAHFYFIVSTIIMLCCCLG-SNLLHKLPVMQQHYRLLIDD--ALSSRQA-IWRVGRR--IRLPAFGVILI---YIVTLSI 258 (394)
Q Consensus 188 ~~~~yF~i~~~~~~~~~~~-~~~l~r~p~~~~~~~~~~~~--~~~~~~~-~~~v~k~--i~~~~~~~fl~---f~vTl~v 258 (394)
.. . |.+..++.+++.++ ...+++.|..++..++++++ +..+..+ .+.+.|+ .|......++. +......
T Consensus 151 ~~-~-~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF07690_consen 151 RW-A-FLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF 228 (352)
T ss_dssp CC-H-HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-c-cccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence 11 2 33333333443333 22333322222111111110 1111122 2333322 23122222222 2222333
Q ss_pred ccceeeeecccccCC-CchHHHHHHHHhhHHhhhhhhhccccc--ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchh
Q 016145 259 FPGFIGEDLESKLLR-DWYPVLLITVYNVSDFVGKSLTAVYVP--KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVP 335 (394)
Q Consensus 259 FPgv~~~~~~~~~~~-~w~~~~~~~~fn~gD~iGR~~~~~~~~--~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~ 335 (394)
.|....+ ....+ ............++..+|+....+... .+++...+....-.+....+..... ..+..+
T Consensus 229 ~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 301 (352)
T PF07690_consen 229 LPLYLQE---VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----SSSPVW 301 (352)
T ss_dssp HHHHCCH---HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----HCHHHH
T ss_pred cchhhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----hhhHHH
Confidence 3432211 11112 233344567777888777766554332 2222222222222221111111111 123355
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGG 385 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~G 385 (394)
..+..++.|+..|........+..+..+++++..+..+....-.+|-.+|
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 56678888998888877777778887878888888888888777777665
No 12
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.30 E-value=6.8e-05 Score=75.92 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=55.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
..+...+.++..+.+...-++ .+|++.+.-+..+.++..++.+..+..+ .++..++.-++.|++.+.
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~g~~~g~ 127 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIV---SDRSNARYFMGIGLIATGIINILFGFSS----------SLWAFALLWVLNAFFQGW 127 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHH---HhhcCCchhHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHc
Confidence 344455666666666666666 7787766445555555555544444321 133333444455666665
Q ss_pred hchhhhhh-cCCCCHHH----HHHHHhcccchhhHHHHHH
Q 016145 137 VGGSLIGS-AGKLPKQY----MQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 137 ~q~s~~~l-a~~fp~~~----~~a~~~G~g~sGv~~s~l~ 171 (394)
.......+ ...+|++. ++.+..+++++++++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 128 GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 34567643 3444566667776655433
No 13
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.30 E-value=2.6e-05 Score=75.97 Aligned_cols=328 Identities=13% Similarity=0.083 Sum_probs=154.1
Q ss_pred hHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc
Q 016145 34 LPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN 112 (394)
Q Consensus 34 lpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
...+.+-.+.+++++++.-+. ....+...+.+...+.....-.+ .+|++.|.-+..+..+..++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~---- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSV---SDRSNPRVFLPIGLILCAIVNLFFGFST---- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHH---HHhhCCeehhHHHHHHHHHHHHHHHHhh----
Confidence 345555556667766653222 23344455666666666666666 8888877767777766665555554321
Q ss_pred cCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHH-HHHHHHHHhCCCCCCCcc
Q 016145 113 YSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVS-ILRIITKASLPQTPQGLR 186 (394)
Q Consensus 113 ~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s-~l~ii~~~~~~~~~~~~~ 186 (394)
.++..++.-++.|++.+.......++.+ .+|++. .+-...++.++++++. ++....... .+.+
T Consensus 82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~ 150 (379)
T TIGR00881 82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWH 150 (379)
T ss_pred ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCch
Confidence 2555666677778888877777776554 456543 3445566667776666 232222111 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhh---cc--c----c-cc----chhHHHHHH--HhhHhHHHHHH
Q 016145 187 TSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLI---DD--A----L-SS----RQAIWRVGR--RIRLPAFGVIL 250 (394)
Q Consensus 187 ~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~---~~--~----~-~~----~~~~~~v~k--~i~~~~~~~fl 250 (394)
..|...+.+..+.+++.+...++.|..+...+.++ ++ + + ++ +...++.+| ..|...+..++
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
T TIGR00881 151 ---WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227 (379)
T ss_pred ---hHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence 22333333333344444444443332211100000 00 0 0 00 111223332 33444444444
Q ss_pred HHhhhh---ccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc--ccchhHHHHHHHHH-HHHHHHHHHh
Q 016145 251 IYIVTL---SIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP--KSIKKAAWACTGRL-VFYPLFAACL 324 (394)
Q Consensus 251 ~f~vTl---~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~--~~~~~l~i~s~~R~-~fiplf~~~~ 324 (394)
.+.... ...|....+ ....+.-........++++..+|+.+..+... .++|+.......-. ....+.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 228 VYVVRTGILDWSPLYLTQ---EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 333322 122322211 11111122234567888999999988765332 11222111111111 1111111111
Q ss_pred cCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 325 HGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 325 ~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
.+ ..+.+...+..+.+|+..+-..........+..++++|..+..+.+.....|-.+|..+
T Consensus 305 -~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 365 (379)
T TIGR00881 305 -NP--AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365 (379)
T ss_pred -Cc--chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence 11 12223344555555654322222222334555677888888888888777777776654
No 14
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.28 E-value=4.3e-05 Score=74.10 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=145.5
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
......+.++..+.+...-.+ .+|++.|.-+..+..+..+.....+..+.. +...++..++...+.|++.+.
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~~ 108 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGAL---ADRYDRKKVMIGADLIRAVLVAVLPFVALL-----GGLNIWQVYVLAGILAIAQAF 108 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHH---HHhhchhHHHHHHHHHHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHHHH
Confidence 344455566666665555555 777776654555555544444444433321 112456666777778888888
Q ss_pred hchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 016145 137 VGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLH 211 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~ 211 (394)
......++.. ..|++ ..+....+.+++++++..+.-...... +. . ..| .+..+..+++.+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----g~--~-~~~-~~~~~~~~~~~~~~~~~- 178 (365)
T TIGR00900 109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-----GI--K-WAI-WVDAVGFAISALLIVSV- 178 (365)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----hH--H-HHH-HHHHHHHHHHHHHHHhc-
Confidence 8887777665 45643 234445566666666555443222111 11 1 122 22222222222222222
Q ss_pred cchHHHHHHHhhhc-cc-cccchhHHHHHH--HhhHhHHHHHHHHhhh---h-ccccceeeeecccccCCCchHHHHHHH
Q 016145 212 KLPVMQQHYRLLID-DA-LSSRQAIWRVGR--RIRLPAFGVILIYIVT---L-SIFPGFIGEDLESKLLRDWYPVLLITV 283 (394)
Q Consensus 212 r~p~~~~~~~~~~~-~~-~~~~~~~~~v~k--~i~~~~~~~fl~f~vT---l-~vFPgv~~~~~~~~~~~~w~~~~~~~~ 283 (394)
|.|..++..+++.+ +. ++.++..+...| ..+...+..++..+.. . ..+|-...+. ...+....-.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 255 (365)
T TIGR00900 179 RIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY---LGRGSTHYGWVLAA 255 (365)
T ss_pred ccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hCCchHHHHHHHHH
Confidence 11110000000000 00 001112222332 2222222222222221 1 3344332210 11112222345677
Q ss_pred HhhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCC
Q 016145 284 YNVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTV 362 (394)
Q Consensus 284 fn~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v 362 (394)
++++..+|+....+...+ ++++....... +.-+.++.+... ++ +.+...+..+++|+..|........+..+.+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (365)
T TIGR00900 256 FGLGALLGALLLGLLGRYFKRMALMTGAIF-VIGLAILVVGLT-PP---NFPLFLVLWFAIGVGYGPINVPQGTLLQRRV 330 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhh-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888999998887643322 23333222210 111111111111 11 2344567788889888877766666677777
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 363 PVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 363 ~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++++|..+..+.......|-.+|..++
T Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 331 PAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777777776654
No 15
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.27 E-value=5.3e-05 Score=73.70 Aligned_cols=335 Identities=14% Similarity=0.130 Sum_probs=151.4
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFA 98 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~ 98 (394)
.+-..+.+..+.... .+.+-.-.+++++.+.-+ .........+.+...+.+...-.+ .+|+..|.-+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l---~d~~G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 4 YVLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLL---ADKFGPRAVAMLGGILYG 79 (377)
T ss_pred EEeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHH---HHHcCccchhHHhHHHHH
Confidence 333444444444433 223333345555554321 122333445555655666555555 677776655666666655
Q ss_pred HHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCH---HHHHHHHhcccchhhHHHH-HHHH
Q 016145 99 LSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPK---QYMQAVFAGTASSGVLVSI-LRII 173 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~---~~~~a~~~G~g~sGv~~s~-l~ii 173 (394)
+..+.....+ .++..++.-.+.|++.+....+...... .+|+ +.......|.++++++... ...+
T Consensus 80 ~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 80 LGFTFYAIAD----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 5554444322 2444455555777777766555544433 2443 3455666677776654332 2212
Q ss_pred HHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHHH--hhHhHHHHHHH
Q 016145 174 TKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGRR--IRLPAFGVILI 251 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k~--i~~~~~~~fl~ 251 (394)
.. ..+ +. ..|...+....+.+...+..+++.|. +. ++++++..+++.+.++.+|+ .|...+..+..
T Consensus 150 ~~------~~~--~~-~~f~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (377)
T TIGR00890 150 IN------LEG--VP-AAFIYMGIIFLLVIVLGAFLIGYPPG-QL--IKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLN 217 (377)
T ss_pred Hh------ccc--HH-HHHHHHHHHHHHHHHHHHHheecCch-hc--cccCcccchhhhhHHHHHcCccHHHHHHHHHHH
Confidence 11 011 11 12233333333333333443432221 10 01111111112233444442 33333322222
Q ss_pred Hhhhh---ccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCC
Q 016145 252 YIVTL---SIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGP 327 (394)
Q Consensus 252 f~vTl---~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~ 327 (394)
.+... ..+|... ++...++.........+++++.+||....+...+ ++|+...... ++.....++....+
T Consensus 218 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 218 AVSGLLLIGLYKPYG----QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVF--GISAVGMAAMLFIP 291 (377)
T ss_pred hHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHcc
Confidence 22211 1122111 1111122233445778999999999887664322 2333322221 11111111111111
Q ss_pred CCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 328 KWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 328 ~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
.. +.+..+...++.|+..|-..+....+.++..++++|..+-.+.......|-.+|..+
T Consensus 292 ~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 292 ML--NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred cc--hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 11 222333455667777776655544455566667778777777777777777776654
No 16
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.26 E-value=4.9e-05 Score=74.11 Aligned_cols=325 Identities=11% Similarity=0.041 Sum_probs=149.9
Q ss_pred HHhhcchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCC
Q 016145 37 NAFITAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSG 115 (394)
Q Consensus 37 N~~ita~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
+.+-.+.+++++++.-+ .........+.+...+...+.-.+ .+|++.|.-+..+.++..+.....+..+
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l---~d~~g~r~~~~~~~~~~~~~~~~~~~~~------- 80 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWL---LDRFGARKTLAVFIVIWGVFTGLQAFAG------- 80 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHH---HHhcCcceeeHHHHHHHHHHHHHHHHHc-------
Confidence 33344556666655322 222444555666666766666666 7777766556666655555544443321
Q ss_pred CcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhH
Q 016145 116 SNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAH 190 (394)
Q Consensus 116 ~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~ 190 (394)
.++..++.-++.|++.+........+.+ .+|++ ..+-...+.+++++++..+.-..... .+. ..
T Consensus 81 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~---~~ 149 (399)
T TIGR00893 81 ---AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSW---QW 149 (399)
T ss_pred ---CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCc---hH
Confidence 2555566677788888887777766665 45654 34455666667766665544322111 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHH---HHhh----h---c--cc---cccchhHHHHHH--HhhHhHHHHHHHHh
Q 016145 191 FYFIVSTIIMLCCCLGSNLLHKLPVMQQH---YRLL----I---D--DA---LSSRQAIWRVGR--RIRLPAFGVILIYI 253 (394)
Q Consensus 191 ~yF~i~~~~~~~~~~~~~~l~r~p~~~~~---~~~~----~---~--~~---~~~~~~~~~v~k--~i~~~~~~~fl~f~ 253 (394)
.|...+....+..+..+...++.|..++. .+++ + + ++ ++++.+.++.+| +.+...+..++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T TIGR00893 150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI 229 (399)
T ss_pred HHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence 23223333333333333334333321100 0000 0 0 00 111223444443 33333333333332
Q ss_pred hhh---ccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccccc-cchh--HHHH-HHHHHHHH-HHHHHHhc
Q 016145 254 VTL---SIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVPK-SIKK--AAWA-CTGRLVFY-PLFAACLH 325 (394)
Q Consensus 254 vTl---~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~-~~~~--l~i~-s~~R~~fi-plf~~~~~ 325 (394)
... ..+|....+ ....+..........+.++..+|+....+...+ .+|+ +... ...-...+ ........
T Consensus 230 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HHHHHHHHHHHHHHH---HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 222 123322211 111111122234566777778887776543221 1221 1111 11001100 00111111
Q ss_pred CCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 326 GPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 326 ~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
...++.+.......+.++..| .......+..+..++++|..+..+.......|-.+|..+
T Consensus 307 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i 366 (399)
T TIGR00893 307 --NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366 (399)
T ss_pred --ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 111222333344444455555 555556666777788888888888887777777776654
No 17
>PRK03545 putative arabinose transporter; Provisional
Probab=98.25 E-value=0.00027 Score=70.19 Aligned_cols=306 Identities=16% Similarity=0.138 Sum_probs=142.6
Q ss_pred hHhhhcccCCCCc-cchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhh
Q 016145 43 VDYFGYLYPAKHV-EKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYG 121 (394)
Q Consensus 43 ~~yf~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 121 (394)
.+...+++.-++. .......+.+...+.+...-.+ .+|++.|.-+..+..+..+..+.....+ .++
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~ 98 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLL---TSNVERRKLLIGLFVLFIASHVLSALAW----------NFT 98 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHHHHHHHhc----------cHH
Confidence 3555555532221 1233334555555555555566 8888888666666666555544443321 255
Q ss_pred hhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Q 016145 122 VTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVS 196 (394)
Q Consensus 122 ~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~ 196 (394)
..++.-.+.|++.+.......++.. .+|++ .++.+..|.+++.+++..+.-..... .+.+ ..|...+
T Consensus 99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-----~gw~---~~f~~~~ 170 (390)
T PRK03545 99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-----LGWR---TTFLAIG 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-----hcHH---HHHHHHH
Confidence 5566666777777776666666555 45643 44556777777777765544322111 1111 2233333
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHHHh--hHhHHHHHHH---Hhhhhccccceeeeeccccc
Q 016145 197 TIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGRRI--RLPAFGVILI---YIVTLSIFPGFIGEDLESKL 271 (394)
Q Consensus 197 ~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k~i--~~~~~~~fl~---f~vTl~vFPgv~~~~~~~~~ 271 (394)
.+..+..+..+..+++.| ++++++.++.++++|+- |...+..++. ++.+....|....+ + ..
T Consensus 171 ~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~g 237 (390)
T PRK03545 171 GGALITLLLLIKLLPLLP----------SEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ--V-AG 237 (390)
T ss_pred HHHHHHHHHHHHhCCCCC----------CCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-cC
Confidence 322222233333333321 01111122344454432 2222211111 11222222322211 1 11
Q ss_pred CCCchHHHHHHHHhhHHhhhhhhhccccccc-chhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccc
Q 016145 272 LRDWYPVLLITVYNVSDFVGKSLTAVYVPKS-IKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYL 350 (394)
Q Consensus 272 ~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~~-~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~ 350 (394)
.+..........+.++..+|+....+...+. +|.+...... .....+.+... .++.+...+..+++|+.++..
T Consensus 238 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~--~~~~~~~l~~~----~~~~~~~~~~~~l~g~~~~~~ 311 (390)
T PRK03545 238 LSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIAL--LLVCLLLLLPA----ANSEWHLSVLSIFWGIAIMCI 311 (390)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH--HHHHHHHHHHH----hchHHHHHHHHHHHHHHHhcc
Confidence 1122223346778889999998876544322 2322222221 11111111111 122344556777888877655
Q ss_pred hheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 351 TSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 351 ~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.........+ ..|++|..+..+.+.....|..+|..++
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 312 GLAMQVKVLK-LAPDATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred hHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433233223 2345666666666666677777776653
No 18
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.20 E-value=7.3e-05 Score=76.32 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHHHHHhhHHhhhhhhhcccccc---cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 278 VLLITVYNVSDFVGKSLTAVYVPK---SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~~~---~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
-....++.+++.++|....+...+ ++++......+-+.....++++.. .++.+...+..+++|+.+|-.....
T Consensus 279 g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 279 AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhchHHHHH
Confidence 345677889999988766543221 122222222222322222222222 1233445677889999988777766
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
.....+.++++++..+..+.+.....|-.+|..+
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 6666666777788888777777777777776644
No 19
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.18 E-value=8.7e-05 Score=84.02 Aligned_cols=308 Identities=14% Similarity=0.047 Sum_probs=139.4
Q ss_pred hHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchh
Q 016145 61 VAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGS 140 (394)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s 140 (394)
.++.++..+.+...=.+ .+|+..+.-+..+..+.++..+...+... ...++..++..++.|++.+.....
T Consensus 54 ~~~~l~~~l~~~~~G~l---~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 54 ALFLLPFLLLSSPAGFL---ADKFSKNRVIRIVKLFEVGLTLLIVLAYY-------LGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHhhhHhhh---cccccHHHHHHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHHHhhchH
Confidence 34455555555444455 88887775555555544443333332211 112666777778889999988888
Q ss_pred hhhhcCC-CCHH----HHHHHHhcccchhhHHHHHHHHH-HHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccch
Q 016145 141 LIGSAGK-LPKQ----YMQAVFAGTASSGVLVSILRIIT-KASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLP 214 (394)
Q Consensus 141 ~~~la~~-fp~~----~~~a~~~G~g~sGv~~s~l~ii~-~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p 214 (394)
..++.+. +|++ ..+-...+.+++.+++.++.-.. ....++..++.......++.+.....++.++....+++.|
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 7777664 4543 34455555566666655544322 2211000111111222233333333333333333343333
Q ss_pred HHHHHHHhhhcccccc----chhHHHHHH--HhhHhHHHHHHHHhh---hhccccceeeeecccccCCCc-hHHHHHHHH
Q 016145 215 VMQQHYRLLIDDALSS----RQAIWRVGR--RIRLPAFGVILIYIV---TLSIFPGFIGEDLESKLLRDW-YPVLLITVY 284 (394)
Q Consensus 215 ~~~~~~~~~~~~~~~~----~~~~~~v~k--~i~~~~~~~fl~f~v---Tl~vFPgv~~~~~~~~~~~~w-~~~~~~~~f 284 (394)
..+.. ++++++... ...++.++| ..|...+..++.++. ....+|....+. ...+.. ..-.+...+
T Consensus 204 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~g~~~~~~ 278 (1146)
T PRK08633 204 AAAPE--VFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV---LGLDNTFQVQYLLAAS 278 (1146)
T ss_pred CCCcc--cccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 11100 000000111 112222322 223333333332222 222344332211 111122 223456777
Q ss_pred hhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCC
Q 016145 285 NVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVP 363 (394)
Q Consensus 285 n~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~ 363 (394)
.+|-.+|..+..+...+ .+++....... +..+-++++... .+.+..++..+++|+..|........+..+..+
T Consensus 279 ~ig~~~g~~~~g~l~~r~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 352 (1146)
T PRK08633 279 AIGIGIGSLLAGRLSGRHIELGLVPLGAL-GLALSLFLLPTA-----PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAP 352 (1146)
T ss_pred HHHHHHHHHHHHHHhCCceEccchhHHHH-HHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Confidence 78888888776654332 22222222211 111111122111 233455677788888887666555555555566
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 364 VAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 364 ~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+++|..+..+.++...+|..+|..++
T Consensus 353 ~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 353 EKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 67777766666665555554444433
No 20
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.16 E-value=0.00032 Score=68.85 Aligned_cols=325 Identities=13% Similarity=0.005 Sum_probs=143.9
Q ss_pred hhHHHHhhcchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc
Q 016145 33 LLPWNAFITAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR 111 (394)
Q Consensus 33 llpwN~~ita~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.+..+......+.+.+.+..+ .........+.+...+.+.+.-.+ .+|.+.|.-+..+.++..+..+.....+
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~d~~g~r~~~~~~~~~~~~~~~~~~~~~--- 91 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPL---SDRYGRRPVLLLGLFIFALSSLGLALSN--- 91 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhH---HHhcCChHHHHHHHHHHHHHHHHHHHHc---
Confidence 344555555666666555322 122344455566666666665555 7777765445555555554444433211
Q ss_pred ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcc
Q 016145 112 NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILRIITKASLPQTPQGLR 186 (394)
Q Consensus 112 ~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~ 186 (394)
.++..++..++.|++.+.......++.. .+|++. .+....+..+++.++..+.-..... .+.
T Consensus 92 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~- 158 (385)
T TIGR00710 92 -------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----LSW- 158 (385)
T ss_pred -------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCH-
Confidence 2445556667788888877777766665 456443 2223333344444433332211111 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHH--HhhHhHHHHHHHHh---hhhccccc
Q 016145 187 TSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGR--RIRLPAFGVILIYI---VTLSIFPG 261 (394)
Q Consensus 187 ~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k--~i~~~~~~~fl~f~---vTl~vFPg 261 (394)
...|...+....+.++..+...++.+..+ +++++++...+.+++.| +.|...+...+.+. ......|-
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (385)
T TIGR00710 159 --HAIFAFLSLAGILLSALIFFILPETLPYE-----ARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF 231 (385)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCCCCCc-----ccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence 12233333333233333333333221000 00011111223333333 23333332222221 12223333
Q ss_pred eeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccccc-cchhH-HHHHHHHHHHHHHHHHHhcCCCCCccchhHHHH
Q 016145 262 FIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVPK-SIKKA-AWACTGRLVFYPLFAACLHGPKWLKTEVPVLVL 339 (394)
Q Consensus 262 v~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~-~~~~l-~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il 339 (394)
...+ ....++...-.....++++..+|+.+..+...+ ++|+. ......-.+...++..... +. .++.......
T Consensus 232 ~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 306 (385)
T TIGR00710 232 VYID---IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-LG-LGSWAMIIGP 306 (385)
T ss_pred HHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-hc-cchHHHHHHH
Confidence 2211 111122223345667888999999887654322 23332 2222222222222211111 11 0112233455
Q ss_pred HHHHhhccccchheeeeecCCCCCchhhhHHHHH-HHHHHHHHHHHHHHHH
Q 016145 340 TSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIV-MILSLGIGLVGGSVLG 389 (394)
Q Consensus 340 ~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~-~~~~l~~Gi~~Gs~~s 389 (394)
..+.|+.+|......+.+..+.. |+++..+..+ ..+....|...|..++
T Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 307 MMFVGIGNSMISSIAMAYALEDF-PHVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888877777777666543 3455444433 3344445555565554
No 21
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.15 E-value=0.0011 Score=65.46 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=70.0
Q ss_pred hHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc
Q 016145 34 LPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN 112 (394)
Q Consensus 34 lpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
+-+..+-...+.+++.+.-++ ........+.+...+.+.+.-.+ .+|+..|.-+..+.++..+..+.....
T Consensus 26 ~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l---~Dr~g~r~~~~~~~~~~~~~~~~~~~~----- 97 (405)
T TIGR00891 26 FDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLW---GDRYGRRLPMVTSIVLFSAGTLACGFA----- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHh-----
Confidence 344444445556665553221 22334445666666666666666 777766655555555544444443321
Q ss_pred cCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHHH
Q 016145 113 YSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 113 ~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~i 172 (394)
..++..++.-++.|++.+.......++.. .+|++. .+....|.+++.+++..+.-
T Consensus 98 -----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 98 -----PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred -----ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12555666777888888877776666543 556543 34455566666666555443
No 22
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.14 E-value=0.00029 Score=70.66 Aligned_cols=104 Identities=6% Similarity=0.072 Sum_probs=58.9
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLV 137 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~ 137 (394)
.....+.+...+.+.+.-.+ .+|+..|.-+..+..+..+..++...... ...++..++.-.+.|++.+..
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l---~d~~grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~l~G~~~~~~ 144 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWL---SDRFGRKKSLLIIALLFVIGAILMGLAAF-------ALSVEMLIVGRVLLGIGVGIA 144 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHh---hhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHH
Confidence 34445555555555555555 77777655555555555544444432221 223456677778888888888
Q ss_pred chhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHH
Q 016145 138 GGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 138 q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ 171 (394)
+.....+.+ .+|++. ...+..+.+++++++.++.
T Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 776666554 566553 3334455555555555544
No 23
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.00044 Score=68.86 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=169.0
Q ss_pred HhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh
Q 016145 62 AYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~ 141 (394)
.|-....+...+...+ ..|++.|.-....+.+++++-++..+. +.|...++.=++.|++.|..-+..
T Consensus 56 ~yAl~~ai~ap~l~~l---t~r~~Rr~lLl~~l~lFi~~n~l~alA----------p~f~~Ll~aR~~~g~a~G~f~~i~ 122 (394)
T COG2814 56 AYALGVALGAPLLALL---TGRLERRRLLLGLLALFIVSNLLSALA----------PSFAVLLLARALAGLAHGVFWSIA 122 (394)
T ss_pred HHHHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667777777 777777766666666676666665542 248888888888999999888888
Q ss_pred hhhcCC-CCHH----HHHHHHhcccchhhHHHHHHH-HHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchH
Q 016145 142 IGSAGK-LPKQ----YMQAVFAGTASSGVLVSILRI-ITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPV 215 (394)
Q Consensus 142 ~~la~~-fp~~----~~~a~~~G~g~sGv~~s~l~i-i~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~ 215 (394)
.++++. -||+ -+.-++.|..+|=+++.-+-. +-+.. -+.. .|+.++.+-.+..+..+..++ |
T Consensus 123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~--------GWR~-~F~~ia~l~ll~~~~~~~~lP--~- 190 (394)
T COG2814 123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--------GWRA-TFLAIAVLALLALLLLWKLLP--P- 190 (394)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh--------hHHH-HHHHHHHHHHHHHHHHHHhCC--C-
Confidence 888875 4543 356677777777776544444 33322 1222 244444333333333344343 0
Q ss_pred HHHHHHhhhccccccchhHHHHHH--HhhHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhh
Q 016145 216 MQQHYRLLIDDALSSRQAIWRVGR--RIRLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKS 293 (394)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~k--~i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~ 293 (394)
++.++++..+..+..+++| ++|...+..++.+.-.+..|.-+.+--.+....+.-......+.|.+|-++|-.
T Consensus 191 -----~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~ 265 (394)
T COG2814 191 -----SEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNL 265 (394)
T ss_pred -----ccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHH
Confidence 0111111122223444444 566667666776666666665443321111111222445568899999999998
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHH
Q 016145 294 LTAVYVPKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIV 373 (394)
Q Consensus 294 ~~~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~ 373 (394)
+......+++++..+...+ +..+.+..+... + ++.+..+..++++|++++-....--+..-+ ..||.+|.++.+
T Consensus 266 ~gGrl~dr~~~~~l~~~~~-l~a~~~l~l~~~-~---~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl 339 (394)
T COG2814 266 LGGRLADRGPRRALIAALL-LLALALLALTFT-G---ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSL 339 (394)
T ss_pred HHhhhccccchhHHHHHHH-HHHHHHHHHHHh-c---chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHH
Confidence 8876555445544333321 111122222221 1 222445666667888875433333222222 457899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016145 374 MILSLGIGLVGGSVLGW 390 (394)
Q Consensus 374 ~~~~l~~Gi~~Gs~~s~ 390 (394)
+.-..++|+.+|+.++=
T Consensus 340 ~~aa~nlgia~GA~lGG 356 (394)
T COG2814 340 NVAAFNLGIALGAALGG 356 (394)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 24
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.06 E-value=0.00074 Score=67.14 Aligned_cols=336 Identities=14% Similarity=0.063 Sum_probs=148.3
Q ss_pred CCCCcccchhhHHHHHhhhchhHHHHhhcchH-hhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceeh
Q 016145 13 EPRDTYKVAYIIHFLLGAGNLLPWNAFITAVD-YFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRM 90 (394)
Q Consensus 13 ~p~d~~~~~y~~f~l~G~~~llpwN~~ita~~-yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri 90 (394)
.+||+++.. .+.+......+.........+ |.++++..+ ........++.++..+.+...-.+ .+|+..|.-+
T Consensus 10 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l---~Dr~g~r~~l 84 (399)
T PRK05122 10 GLRLTLRIV--SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY---ADTLGPKKAV 84 (399)
T ss_pred cCcccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhH---HhccCCcchH
Confidence 455555433 233333333333333333333 344444322 222344455666666666665566 8888877777
Q ss_pred hHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhh-cCCCCHHH-HHH---HHhcccchhh
Q 016145 91 NLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGS-AGKLPKQY-MQA---VFAGTASSGV 165 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~l-a~~fp~~~-~~a---~~~G~g~sGv 165 (394)
..+..+..+..+......... ......++..++.-++.|++.+......... ....|++. .++ ...+...+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 162 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLA--AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA 162 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhh--ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH
Confidence 777666554433332221110 1112235555666678888888877766554 34566443 222 2233333434
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHHHhhHhH
Q 016145 166 LVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGRRIRLPA 245 (394)
Q Consensus 166 ~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k~i~~~~ 245 (394)
++..+--..... .+.+ ..+.+..++.++ ......+.|.. +++ ++++.+.++.+|+.|...
T Consensus 163 ~g~~l~~~l~~~-----~g~~----~~~~~~~~~~~~---~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~ 222 (399)
T PRK05122 163 IGAPLGVLLYHW-----GGLA----GLGLLIMLLALL---GLLLARPRPAV-----PPV---KGERLPFRRVLGRVWPYG 222 (399)
T ss_pred HHHHHHHHHHHc-----ccHH----HHHHHHHHHHHH---HHHHHhcCCCC-----CCC---CccchhHHHHHHHHHHHH
Confidence 433333221111 1111 122222222222 22222222210 000 111223455566655543
Q ss_pred HHHHHH---HhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHH
Q 016145 246 FGVILI---YIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFA 321 (394)
Q Consensus 246 ~~~fl~---f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~ 321 (394)
....+. +.......|.... +.+ .++ .......+.++..+||....+... .++|+...... .+....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~--~~~~~~~~ 294 (399)
T PRK05122 223 MGLALASIGFGTIATFITLYYA---ARG-WDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSL--LVEILGLL 294 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---Hcc-ccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHH
Confidence 322111 1111111121111 111 011 112345778888888887655332 23344333222 22222111
Q ss_pred HHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 016145 322 ACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSV 387 (394)
Q Consensus 322 ~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~ 387 (394)
..... ++.+...+..+++|+..|-.........-+..++++|..+..+++.....|..+|..
T Consensus 295 ~~~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 295 LLWLA----PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred HHHHh----ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 223445566777888776444333233335566777888887777777777655443
No 25
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.01 E-value=0.0006 Score=69.40 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh
Q 016145 62 AYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~ 141 (394)
.+.+...+.+...-.+ .+|+..|.-+..+.++..+.......... ....++..+++-.+.|++.+......
T Consensus 71 ~~~i~~~~~~~~~G~l---~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~l~gi~~g~~~~~~ 141 (452)
T PRK11273 71 GISIAYGFSKFIMGSV---SDRSNPRVFLPAGLILAAAVMLFMGFVPW------ATSSIAVMFVLLFLCGWFQGMGWPPC 141 (452)
T ss_pred HHHHHHHHHHhhhhhh---hhccCCchhHHHHHHHHHHHHHHHHhhhc------ccccHHHHHHHHHHHHHHHhccchHH
Confidence 3444444445454455 88887765555565555555444433211 11124444555566777776665533
Q ss_pred h-hhcCCCCHHHH----HHHHhcccchhh
Q 016145 142 I-GSAGKLPKQYM----QAVFAGTASSGV 165 (394)
Q Consensus 142 ~-~la~~fp~~~~----~a~~~G~g~sGv 165 (394)
. -....+|++.. +-+..|.+++|.
T Consensus 142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 170 (452)
T PRK11273 142 GRTMVHWWSQKERGGIVSVWNCAHNVGGG 170 (452)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhhhh
Confidence 3 33446776643 334456666553
No 26
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.00 E-value=0.0011 Score=63.60 Aligned_cols=298 Identities=18% Similarity=0.194 Sum_probs=155.8
Q ss_pred hhHHHHhhcchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc
Q 016145 33 LLPWNAFITAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR 111 (394)
Q Consensus 33 llpwN~~ita~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 111 (394)
-..++......+.+.+++..+ .........+.+...+.....-.+ .+|.+.|.-+..+.....+..+.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~d~~g~r~~~~~~~~~~~~~~~~~~~~---- 84 (352)
T cd06174 12 GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYL---SDRFGRRRVLLLGLLLFALGSLLLAFA---- 84 (352)
T ss_pred HHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhCCchhhHHHHHHHHHHHHHHHHh----
Confidence 334444444444444443211 223344455666666666665566 777776665666666665555554432
Q ss_pred ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcc
Q 016145 112 NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLR 186 (394)
Q Consensus 112 ~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~ 186 (394)
..++...+...+.|++.+..+....++.. .+|++ ..+-...+.++++.++..+.-..... .+.
T Consensus 85 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~- 152 (352)
T cd06174 85 ------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGW- 152 (352)
T ss_pred ------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhH-
Confidence 12555666777788888888887777666 34542 23444455555555555444322211 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHHHhhHhHHHHHHHHhh---hhcccccee
Q 016145 187 TSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGRRIRLPAFGVILIYIV---TLSIFPGFI 263 (394)
Q Consensus 187 ~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k~i~~~~~~~fl~f~v---Tl~vFPgv~ 263 (394)
...|...+ ++.+++.+....++ |+.+...+..+..... .....|...
T Consensus 153 --~~~~~~~~-~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T cd06174 153 --RWLFLILA-ILGLLLALLLLFLL---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYL 202 (352)
T ss_pred --HHHHHHHH-HHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11222222 22222222222111 2333333333333322 222333222
Q ss_pred eeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchh-HHHHHHHHHHH-HHHHHHHhcCCCCCccchhHHHHH
Q 016145 264 GEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKK-AAWACTGRLVF-YPLFAACLHGPKWLKTEVPVLVLT 340 (394)
Q Consensus 264 ~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~-l~i~s~~R~~f-iplf~~~~~~~~~~~~d~~~~il~ 340 (394)
.+ ..+.++...-.....+.++..+|+....+... .++|+ ...... .+. +..+..... ++.+...+..
T Consensus 203 ~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~-----~~~~~~~~~~ 272 (352)
T cd06174 203 QE---VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL--LLAALGLLLLALA-----PSLALLLVAL 272 (352)
T ss_pred HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHh-----ccHHHHHHHH
Confidence 11 10112333445678888999999988765322 12333 322221 221 111112111 2234567788
Q ss_pred HHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 341 SMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 341 ~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++.|+..|........+..+..++++|..+..+.......|-.+|..+.
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999888888888888888888998888888888888887777664
No 27
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.99 E-value=0.00035 Score=69.41 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=48.1
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.++..+++....+... .++|+....... +....++.... .++.+...+..++.|+.+|-........
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALI--FSVLLLIPMSF----VQTPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH--HHHHHHHHHHH----hccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 3445667778777765443221 123333322221 11111111111 1223445566677888887655443333
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..+++++..+-.+.......|..+|..++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 33334445555444444444555555555443
No 28
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.95 E-value=0.00045 Score=69.66 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=84.1
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFA 98 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~ 98 (394)
.+...|++.|... +......+.+++.+.-++ -.......+.....+.....-.+ .+|+.+|.-+..++.+..
T Consensus 7 ~~~~~f~~~G~~~----~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l---~~r~G~r~~~~~g~~l~~ 79 (410)
T TIGR00885 7 LITSLFALWGFAN----DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIF---MKKLSYKAGILLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCchHHHHHHHHHHH
Confidence 4556788888765 223233355566553322 22344556666667777777777 889888888888888877
Q ss_pred HHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHH
Q 016145 99 LSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ 171 (394)
+..+....... ...++..++..++.|.+.+..|.+.-.+.. ..|++. ++-...++++++.++..+.
T Consensus 80 ~g~~l~~~~~~-------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 80 LGAFLFWPAAE-------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHHHHHHHh-------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555432111 123666677788899999999987655543 334432 3444445566665555443
No 29
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.95 E-value=0.0015 Score=64.95 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.......+.|+..|-.....+.+..+.. |+++..++.+.+.....|-.+|+.++
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 300 WTLLVPAALFFFGAGMLFPLATSGAMEPF-PYLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777765555555444433 35667777777766677777777653
No 30
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.94 E-value=0.00043 Score=67.68 Aligned_cols=286 Identities=16% Similarity=0.125 Sum_probs=124.3
Q ss_pred CcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcc--hhhhhhHHHHhhccchhhhchhhhhhcC-CCCH----HHH
Q 016145 81 GSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNG--AYGVTVASVVTCGLADGLVGGSLIGSAG-KLPK----QYM 153 (394)
Q Consensus 81 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~----~~~ 153 (394)
.+|+..|.-+..+..+..+..++.+..+.. ++.. .....++.-++.|++.+..+.....+.+ .+|+ +..
T Consensus 59 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 134 (394)
T TIGR00883 59 GDRIGRKKTLVITLLMMGIGTLLIGLLPSY----ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYG 134 (394)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCCh----hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHH
Confidence 778777665666666666555555442211 1100 1123445556777777776665555554 3443 245
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchh
Q 016145 154 QAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQA 233 (394)
Q Consensus 154 ~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~ 233 (394)
.....|.+++.++..++........+++. ....+-...|.+..++.+++......+++.|..+.. ++++++++.+
T Consensus 135 ~~~~~~~~~G~~i~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 209 (394)
T TIGR00883 135 SFQQVGAPVGLLLAALTVLLLSYLLGDDA-LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKA----QEKHKKKRGP 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHH-hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHH----HhccccccCC
Confidence 55666666666666555443322121110 001112223344444444444333333333322111 1111222334
Q ss_pred HHHHHHHhh----HhHHHHHHHHhhh---hccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchh
Q 016145 234 IWRVGRRIR----LPAFGVILIYIVT---LSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKK 305 (394)
Q Consensus 234 ~~~v~k~i~----~~~~~~fl~f~vT---l~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~ 305 (394)
.++.+|+-+ ......+...... ....|-...+ ....++.........+.++..+++.+..+... .++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ---TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP 286 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 445544432 1111111111111 1123322211 11111122223456777888888877654332 12333
Q ss_pred HHH-HHHHHHHH-HHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHH-HHHHHHHHH
Q 016145 306 AAW-ACTGRLVF-YPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIV-MILSLGIGL 382 (394)
Q Consensus 306 l~i-~s~~R~~f-iplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~-~~~~l~~Gi 382 (394)
... ....-.+. .+.+..... + .+.+......++.|+..|-..+......++..++++|..+..+ .++....|-
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~ 362 (394)
T TIGR00883 287 VLIIFTVLAALLAVPLLMALLD-S---GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG 362 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-C---CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence 322 22222211 122211111 1 1223344566777887776766666666776676777655433 333333443
No 31
>PRK12382 putative transporter; Provisional
Probab=97.77 E-value=0.004 Score=61.73 Aligned_cols=102 Identities=16% Similarity=-0.038 Sum_probs=55.0
Q ss_pred HHHHhhHHhhhhhhhccccc-ccchh-HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 281 ITVYNVSDFVGKSLTAVYVP-KSIKK-AAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 281 ~~~fn~gD~iGR~~~~~~~~-~~~~~-l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
...+.++..+|+....+... .++|+ +........+...+ +... ++.+...+..++.|+..|..........
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL--LWLA-----PTAWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH--HHHc-----ccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677788888776544222 22333 33222322222111 1111 2234445667777888775544333333
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+..++++|..+..+.+.....|-.+|..+.
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888877777777777777776543
No 32
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.74 E-value=0.0023 Score=62.44 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred hHHHHhhcchH-hhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc
Q 016145 34 LPWNAFITAVD-YFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR 111 (394)
Q Consensus 34 lpwN~~ita~~-yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.-|..+-...+ |+++.+.-+ .....+...+.+...+.+...-.+ .+|+..|..+..+..+..+..+.....+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~i~~~~~~~~~--- 88 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFL---VDKFGPRYTTTLSLLLLAIPCLWAGLAV--- 88 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHHHHHHHh---
Confidence 33444444444 455554322 223455556677777777776667 7887777666677766666555544322
Q ss_pred ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHH
Q 016145 112 NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQ 151 (394)
Q Consensus 112 ~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~ 151 (394)
+ .++..++.-++.|++.+......--++..+|++
T Consensus 89 ----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 89 ----Q--SYSVLLLLRLFIGIAGGSFASCMPWISFFFPKK 122 (366)
T ss_pred ----h--hHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHh
Confidence 0 244444555556665554433333344456654
No 33
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.74 E-value=0.0024 Score=64.63 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=59.6
Q ss_pred HHHHhhcchHhhhcccCCCC--ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc
Q 016145 35 PWNAFITAVDYFGYLYPAKH--VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN 112 (394)
Q Consensus 35 pwN~~ita~~yf~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
....+....++.++. +-+ ........+.+...+.+...-.+ .+|++.+.-+..+..+..++.+.......
T Consensus 42 ~~~~~~~~~p~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l---~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--- 113 (438)
T TIGR00712 42 VRKNFALAMPYLVEQ--GFSKGELGFALSAISIAYGFSKFIMGSV---SDRSNPRVFLPAGLILSAAVMLLMGFVPW--- 113 (438)
T ss_pred HhccHHhhhHHHHHc--CCCHhHhHHHHHHHHHHHHHhhhccchh---hhccCCceehHHHHHHHHHHHHHHhcccc---
Confidence 333344445566542 222 12233334555555555555555 78887665555565555555444332211
Q ss_pred cCCCcchhhhhhHHHHhhccchhhhchhhh-hhcCCCCHH----HHHHHHhcccchhhHHHH
Q 016145 113 YSGSNGAYGVTVASVVTCGLADGLVGGSLI-GSAGKLPKQ----YMQAVFAGTASSGVLVSI 169 (394)
Q Consensus 113 ~~~~~~~f~~~li~~~~~g~~~~~~q~s~~-~la~~fp~~----~~~a~~~G~g~sGv~~s~ 169 (394)
....+....+...+.|++.+...+... .+...+|++ .++.+..+.+++|.++..
T Consensus 114 ---~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 114 ---ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred ---ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 011233334444556666555444322 233457653 344455666777766544
No 34
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.72 E-value=0.0046 Score=63.55 Aligned_cols=21 Identities=0% Similarity=0.165 Sum_probs=15.3
Q ss_pred HHHHHHhhHHhhhhhhhcccc
Q 016145 279 LLITVYNVSDFVGKSLTAVYV 299 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~ 299 (394)
....+++++..+||.+..+..
T Consensus 292 ~~~~~~~~~~~ig~~~~G~ls 312 (476)
T PLN00028 292 AIAASFGLMNLFARPAGGYLS 312 (476)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 456778889999998766543
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.69 E-value=0.0026 Score=64.72 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=69.5
Q ss_pred hHHHHhhcchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc
Q 016145 34 LPWNAFITAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN 112 (394)
Q Consensus 34 lpwN~~ita~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
+..+....+.+.+.+.+..+ ....+....+.++..+...+.-++ .+|++.|.-+..+.++..+..+.....
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~----- 87 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWL---AKRFGTRRLFLISTFAFTLGSLLCGVA----- 87 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHH---HHHhCcHHHHHHHHHHHHHHHHHHhCc-----
Confidence 33344445566666665432 223455666777777777777777 777776655556655555444443321
Q ss_pred cCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHH
Q 016145 113 YSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVS 168 (394)
Q Consensus 113 ~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s 168 (394)
..+...++.-++.|++.+........+.. .+|++. .+-+..+..+++.++.
T Consensus 88 -----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 88 -----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred -----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 12555566677788888877776666554 566543 2333344444444443
No 36
>PRK10133 L-fucose transporter; Provisional
Probab=97.67 E-value=0.0048 Score=62.76 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=78.5
Q ss_pred hHHHHHhhhchhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHH
Q 016145 23 IIHFLLGAGNLLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSL 101 (394)
Q Consensus 23 ~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 101 (394)
..|++.|+.... .-.-.+.+++.+.-++ -.......+.+...+.+...-.+ .+|+..|.-+..++.+..++.
T Consensus 33 ~~~~~~~~~~~~----~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l---~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 33 SLFFLWAVANNL----NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL---MKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHHH
Confidence 455555655422 2222344566554322 22334455666666777766666 788777776777777776665
Q ss_pred HHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHH-----HHHHhcccchhhHHHHH
Q 016145 102 LVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYM-----QAVFAGTASSGVLVSIL 170 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~-----~a~~~G~g~sGv~~s~l 170 (394)
++...... ...+...++.-++.|++.+..+.....+....+++.. +....+.++++.++.++
T Consensus 106 ~l~~~~~~-------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 106 ALFWPAAE-------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321111 1236677778888999999998888777655554332 33455555566555544
No 37
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.65 E-value=0.0031 Score=62.83 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=28.0
Q ss_pred HHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 337 LVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 337 ~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+.+++.++..|........+..+ ..|++|+.+..+.+.....|..+|+.++
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554443333222222 2345677777776666677777777654
No 38
>TIGR00898 2A0119 cation transport protein.
Probab=97.64 E-value=0.013 Score=60.28 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=46.2
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
....+.+...+...+.-.+ .+|+..|.-+..+.++..++.+..... ..++..++.-++.|++.+...
T Consensus 132 ~~s~~~~g~~~g~~~~g~l---~Dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 132 TQSCFFVGVLLGSFVFGYL---SDRFGRKKVLLLSTLVTAVSGVLTAFS----------PNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred HHHHHHHHHHHHHHhHHHh---hhhccchHHHHHHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHhhccchH
Confidence 3344555555555555555 777665543444444444443333321 125666677778888888777
Q ss_pred hhhhhhcC-CCCHHH
Q 016145 139 GSLIGSAG-KLPKQY 152 (394)
Q Consensus 139 ~s~~~la~-~fp~~~ 152 (394)
.....+.+ .+|++.
T Consensus 199 ~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQ 213 (505)
T ss_pred HHHHHHhheecChhh
Confidence 76666655 567654
No 39
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.60 E-value=0.0068 Score=60.44 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
++..+.+.++|+..|......+... ...++++|..+..+++.....|-.+|+.+
T Consensus 310 ~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 363 (406)
T PRK15402 310 LWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIEL 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778887776554433322 22344677777777777766676666554
No 40
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.00069 Score=67.04 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=92.5
Q ss_pred CCCCcccchhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCcc-chhhhHhHHHHHHHHHHHHHhccCCcccCcceehh
Q 016145 13 EPRDTYKVAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVE-KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMN 91 (394)
Q Consensus 13 ~p~d~~~~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~ 91 (394)
.+|-.+...+..|++.|+...+ .-.-.+-+++.|+-++.+ +.+-.++....++..+-.-.+ .+|++++.-+.
T Consensus 10 ~~~~~~v~~t~lFfl~G~~~~l----~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~---~kk~gyk~gi~ 82 (422)
T COG0738 10 SVKLAFVLLTSLFFLWGFITCL----NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLL---IKKLGYKAGIV 82 (422)
T ss_pred CceeHHHHHHHHHHHHHHHhhc----chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHH---HHHhhhHHHHH
Confidence 6666777788899999975443 111235555555433333 334456666667777777788 99999999999
Q ss_pred HHHHHHHHHHHHH-hhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHH--H---HHHHHhcccchhh
Q 016145 92 LGFSMFALSLLVT-PIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQ--Y---MQAVFAGTASSGV 165 (394)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~--~---~~a~~~G~g~sGv 165 (394)
.|+.++++...+. |.. ....|...++..+++|.+-+.+|.+.=.+.+...++ - ++-...=.++++.
T Consensus 83 lgL~l~avg~~lF~pAa--------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~ 154 (422)
T COG0738 83 LGLLLYAVGAALFWPAA--------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI 154 (422)
T ss_pred HHHHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH
Confidence 9999988764443 331 123467777888999999999999988888766543 2 3334444455554
Q ss_pred HH
Q 016145 166 LV 167 (394)
Q Consensus 166 ~~ 167 (394)
++
T Consensus 155 ~g 156 (422)
T COG0738 155 LG 156 (422)
T ss_pred HH
Confidence 44
No 41
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.51 E-value=0.019 Score=57.46 Aligned_cols=115 Identities=8% Similarity=-0.006 Sum_probs=65.7
Q ss_pred chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchh
Q 016145 42 AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAY 120 (394)
Q Consensus 42 a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 120 (394)
+.+++++.+.-++ ........+.++..+.+...-.+ .+|++.|.-+..+.++..++.......+ .+
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l---~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~ 106 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLL---ADKFGRKPLMMWSIVAYSVGTGLSGLAS----------GV 106 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHHHh----------HH
Confidence 3344444443222 22334445666666666666666 7777776666667666666555544322 24
Q ss_pred hhhhHHHHhhccchhhhchhhhhh-cCCCCHHH----HHHHHhcccchhhHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGS-AGKLPKQY----MQAVFAGTASSGVLVSI 169 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~l-a~~fp~~~----~~a~~~G~g~sGv~~s~ 169 (394)
+..++.-++.|++.+........+ ...+|++. .+.+..|.++++++...
T Consensus 107 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence 555666677787777666555554 34566543 44556677777766543
No 42
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.50 E-value=0.0082 Score=62.57 Aligned_cols=331 Identities=15% Similarity=0.079 Sum_probs=159.6
Q ss_pred cchhhHHHHHhhhchhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHH
Q 016145 19 KVAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMF 97 (394)
Q Consensus 19 ~~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~ 97 (394)
+..|-.+++--..+++.......+...+..+..++. .......+..+|.++..+..=.+ .+|++.|.-+..+-++.
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~l---aDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGAL---ADRFDRRRILILSQLLR 85 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccchHHHHHHHHHH
Confidence 345555666666677776666666666654443322 22333445555665555554455 88887776566665555
Q ss_pred HHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHHH-HH-----------HHhcccchh
Q 016145 98 ALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQYM-QA-----------VFAGTASSG 164 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~~-~a-----------~~~G~g~sG 164 (394)
.+..+.+++... .+....+..++..++.|+++++.+.+..++.. +.|++.. +| -.+|-+++|
T Consensus 86 ~~~~~~L~~l~~-----~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 86 ALVALLLAVLAF-----FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred HHHHHHHHHHHH-----hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 544444444332 12344677788899999999999988888775 5676442 22 223444444
Q ss_pred hHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccccccchhHHHHHH-----
Q 016145 165 VLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVGR----- 239 (394)
Q Consensus 165 v~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~k----- 239 (394)
++.+..... .. |.+.++..++.+.+.... |.+. ++++.+++.-..++++-+|
T Consensus 161 ~Lva~~G~~----------------~~-f~inalsfl~~i~~l~~~-~~~~-----~~~~~~~e~~~~~l~~G~ryv~~~ 217 (524)
T PF05977_consen 161 ILVAFFGAA----------------AA-FLINALSFLISILALLRW-KPPP-----PPSSLPRERFFSALREGLRYVRSS 217 (524)
T ss_pred HHHHHHHHH----------------HH-HHHHHHHHHHHHHHHHHc-cccc-----cccccchhhhhhhHHHHHHHHhcc
Confidence 443332221 11 122211111122222112 2110 0000000111112222221
Q ss_pred -HhhHhHHHHHHHHhh---hhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHH
Q 016145 240 -RIRLPAFGVILIYIV---TLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRL 314 (394)
Q Consensus 240 -~i~~~~~~~fl~f~v---Tl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~ 314 (394)
.++..++..++.++. -..+.|-+..+ .-+.....| -++..++.+|-.+|-.+....+. .+++++...+. +
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~--~l~~~a~~y-Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~--~ 292 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARD--VLGGGASGY-GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS--L 292 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHH--HhCCcHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH--H
Confidence 111111111111111 12344533211 111112234 34578999999999998765433 23334333322 2
Q ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 315 VFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 315 ~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+....+... ..++.+..++.+++.|.......+......-+.++++.|..+..+.......|..+|+++.
T Consensus 293 ~~a~~~~~la----l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 293 LFALALLLLA----LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred HHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111111 1233455567777888877655544433333445667787777777777777777776653
No 43
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.47 E-value=0.016 Score=59.76 Aligned_cols=99 Identities=12% Similarity=-0.031 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-C
Q 016145 69 LVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-K 147 (394)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~ 147 (394)
+.+++.-.+ .+|+..|.-+..+.+++.++.+......... .. ........++.=++.|++.|....+...+.+ .
T Consensus 72 ig~~~~G~l---~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~-~~-g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~ 146 (490)
T PRK10642 72 LGGLFFGML---GDKYGRQKILAITIVIMSISTFCIGLIPSYA-TI-GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEY 146 (490)
T ss_pred HHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHhcccHH-HH-HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHh
Confidence 333343444 7887777767777777776666655422100 00 0001122445556677777766666655554 4
Q ss_pred CCHH----HHHHHHhcccchhhHHHHHHH
Q 016145 148 LPKQ----YMQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 148 fp~~----~~~a~~~G~g~sGv~~s~l~i 172 (394)
+|++ ....+..|..++.++++.+..
T Consensus 147 ~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 147 SPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6643 444555555555555554443
No 44
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.46 E-value=0.0094 Score=58.21 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 335 PVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 335 ~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
...+...+.|+..|......+.+..+. .|+++..+..+.+.....|..+|..++
T Consensus 290 ~~~~~~~~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 290 ALLMLQLLNAIFIGILAGIGMLYFQDL-MPGRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777776655554444443 344555666666655566766666543
No 45
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.42 E-value=0.08 Score=53.06 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
......++-.+|..+..+... .++|+++..... +..+....+... + ++.+...+.+++.|+..|-.........
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL-LMVLGYLIFFFA-G---SNLPLILVLIILAGFGQNFVTGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHc-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888776544222 234444333321 111111111111 1 2223445666777777776655544444
Q ss_pred CCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVP-------VAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~-------~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++.++ ++.+..+..+.+++...|..+|..+.
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 22234555666777777777776554
No 46
>PRK03699 putative transporter; Provisional
Probab=97.40 E-value=0.0073 Score=60.14 Aligned_cols=95 Identities=8% Similarity=0.049 Sum_probs=48.6
Q ss_pred hHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchh
Q 016145 61 VAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGS 140 (394)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s 140 (394)
..+.+...+.+.+.-++ .+|++.|.-+..+..+..+..+..... + .++..++.-.+.|++.+...+.
T Consensus 49 s~~~~~~~i~~~~~g~l---~dr~g~r~~~~~~~~~~~i~~~l~~~~-------~---~~~~~~~~~~l~G~~~g~~~~~ 115 (394)
T PRK03699 49 TFLNAGILISIFLNAWL---MEIIPLKRQLIFGFALMILAVAGLMFS-------H---SLALFSIAMFVLGVVSGITMSI 115 (394)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-------c---hHHHHHHHHHHHHHhhHhhccc
Confidence 34555555666666666 777766655555555555444443321 1 2444455556677766665544
Q ss_pred hhhh-cCCCCHHHHH----HHHhcccchhhHHH
Q 016145 141 LIGS-AGKLPKQYMQ----AVFAGTASSGVLVS 168 (394)
Q Consensus 141 ~~~l-a~~fp~~~~~----a~~~G~g~sGv~~s 168 (394)
...+ ...+|++.-. ....+.+++|.+..
T Consensus 116 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 116 GTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 4333 3456654322 22234455555443
No 47
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.38 E-value=0.042 Score=54.39 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=63.9
Q ss_pred chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchh
Q 016145 42 AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAY 120 (394)
Q Consensus 42 a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 120 (394)
..+.+++++.-++ ..+.....+.+...+.+...-.+ .+|++.|.-+..+..+..+..+.....+ .+
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~l~~~~~----------~~ 91 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALF---SSRYSLKHILLFLVALCVIGNAMFTLSS----------SY 91 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHH---HccCccHHHHHHHHHHHHHHHHHHHHhC----------cH
Confidence 3344555543221 23445556777777777777777 8888776656666666555544443211 24
Q ss_pred hhhhHHHHhhccchhhhchhhhhhc-CCCCHHH----HHHHHhcccchhhHHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGSA-GKLPKQY----MQAVFAGTASSGVLVSIL 170 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~la-~~fp~~~----~~a~~~G~g~sGv~~s~l 170 (394)
+..++.-++.|++.+........+. ..+|++. .+.+..|+++++.++..+
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 5555566677777666554443333 3456542 334446666666665443
No 48
>PRK10504 putative transporter; Provisional
Probab=97.33 E-value=0.012 Score=59.96 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 338 VLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 338 il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+..++.|+..|..........++.++++++..+..+.++....|..+|..+.
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4455667777665555555556667778888888888888877877776554
No 49
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.32 E-value=0.035 Score=60.25 Aligned_cols=183 Identities=9% Similarity=0.057 Sum_probs=91.0
Q ss_pred hhhHHHHHhhhchh-HHHHhh--cchHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHH
Q 016145 21 AYIIHFLLGAGNLL-PWNAFI--TAVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSM 96 (394)
Q Consensus 21 ~y~~f~l~G~~~ll-pwN~~i--ta~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~ 96 (394)
.+..+++++++.+. .+.... ...++....+.-+ .....+..++.+...++.++.-++ .+|+..+..+..+.++
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~L---sDR~GRR~~lii~lil 241 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGL---ADKLGRKQCLLICLSV 241 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHH
Confidence 34455555555443 222221 2334444443221 123345555666666777666666 7777777666666655
Q ss_pred HHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHHH----HHHHhcccchhhHHHHHH
Q 016145 97 FALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQYM----QAVFAGTASSGVLVSILR 171 (394)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~~----~a~~~G~g~sGv~~s~l~ 171 (394)
..+..++..... .++..++.-++.|++.+........+.+ .+|++.- ..+..+.+++++++..+.
T Consensus 242 ~~i~~ll~afa~----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 242 NGFFAFFSSFVQ----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444433211 2455556667778777776677766666 5676543 334445555555554433
Q ss_pred HHHHHhCCC---CCCCc-chhhHHHHHHHHHHHHHHHHHHHhhccchHH
Q 016145 172 IITKASLPQ---TPQGL-RTSAHFYFIVSTIIMLCCCLGSNLLHKLPVM 216 (394)
Q Consensus 172 ii~~~~~~~---~~~~~-~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~ 216 (394)
.......+- ..... ..+--..+.+.++..+++++.++.++.+|..
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw 360 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 221111100 00000 1112234445555555566666667766643
No 50
>PRK11043 putative transporter; Provisional
Probab=97.29 E-value=0.063 Score=53.32 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=54.3
Q ss_pred hhhchhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhh
Q 016145 29 GAGNLLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPII 107 (394)
Q Consensus 29 G~~~llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 107 (394)
+......++......+.+++.+.-++ -.......+.++..+.+...-.+ .+|++.|.-+..+..+..+..+.....
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPL---SDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhH---HhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 44445567777666555555543211 12233334555555555555555 777766655555554444443333221
Q ss_pred hcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhc-CCCCHH
Q 016145 108 DWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSA-GKLPKQ 151 (394)
Q Consensus 108 ~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la-~~fp~~ 151 (394)
+ .++..++.-.+.|++.+......-++. ..+|++
T Consensus 92 -------~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 126 (401)
T PRK11043 92 -------E---SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ 126 (401)
T ss_pred -------c---CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence 1 244444555566665554444333333 356654
No 51
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.28 E-value=0.1 Score=53.78 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=62.6
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
..+...+.+...+..++.-++ .+|+..|.-+..+.++..+..++...... ......+...++.-++.|++.+.
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l---~d~~Grr~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWL---ADKLGRKRVYGMELIIMIIATVASGLSPG----SSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHHHccC----cccchHHHHHHHHHHHHHHHHhh
Confidence 345566777777777777777 77776665555555555554443332110 11112255566777788888887
Q ss_pred hchhhhhhcC-CCCHHHH----HHHHhcccchhhHHHHHHH
Q 016145 137 VGGSLIGSAG-KLPKQYM----QAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~~~----~a~~~G~g~sGv~~s~l~i 172 (394)
.......+.+ .+|++.- .-...++.++.+++..+..
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666655 6776543 3333444555555554444
No 52
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.28 E-value=0.013 Score=60.34 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.....+++.|+..|..........-+.++++++..++.+.+..-.+|-.+|..++
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889988877665555555567788899999999999888888877654
No 53
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.26 E-value=0.01 Score=67.59 Aligned_cols=256 Identities=18% Similarity=0.093 Sum_probs=124.8
Q ss_pred hhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHH
Q 016145 120 YGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFI 194 (394)
Q Consensus 120 f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~ 194 (394)
++..+++.++.|++.+.......++.. .+|++ -++..+.+.+++.+++.++.-...... +....|.
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---------~~~~~~~ 178 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---------NFVILVA 178 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---------ccHHHHH
Confidence 667778888899999988888877765 45643 356667777777777766655443321 1122233
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHhhhccc--cccchhHHHHHH--HhhHhHHHHHHHH---hhhhccccceeeeec
Q 016145 195 VSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDA--LSSRQAIWRVGR--RIRLPAFGVILIY---IVTLSIFPGFIGEDL 267 (394)
Q Consensus 195 i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~--~~~~~~~~~v~k--~i~~~~~~~fl~f---~vTl~vFPgv~~~~~ 267 (394)
.+.++.++++++...+++.+-.+. +.+.+.+ ++....++.+.| ..|...+..++.+ ......+|....+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 256 (1140)
T PRK06814 179 LLMGIAVLGWLASLFIPKTGNAAP--DLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETL 256 (1140)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCC--CCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 333333444444433433221000 0000000 000112222222 2333333322222 223334554432211
Q ss_pred ccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhH-HHHHHH-HHHHHHHHHH-HhcCC--C-------CC--cc
Q 016145 268 ESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKA-AWACTG-RLVFYPLFAA-CLHGP--K-------WL--KT 332 (394)
Q Consensus 268 ~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l-~i~s~~-R~~fiplf~~-~~~~~--~-------~~--~~ 332 (394)
..+....-.+...+.+|-.+|.....+... ..+++. ....++ -+..+.+.+. ....+ . +. .+
T Consensus 257 ---g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 257 ---GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 112222334567888888898888765432 112222 111111 1111111110 00000 0 01 34
Q ss_pred chhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 333 EVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 333 d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+..++..+++|+..|..........-+..+++++..+....++...+|..+|+.+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 455667777888888776655544444556677888777777777777777777654
No 54
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.19 E-value=0.0073 Score=61.72 Aligned_cols=122 Identities=10% Similarity=0.014 Sum_probs=67.2
Q ss_pred chHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchh
Q 016145 42 AVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAY 120 (394)
Q Consensus 42 a~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 120 (394)
+.+.+++.+.-+ .-...+..++.+...+.+...-.+ .+|++.|.-+..+.++..+.....+..... ....+
T Consensus 51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l---~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 122 (467)
T PRK09556 51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYY---ADGKNTKQFLPFLLILSAICMLGFGASLGS-----GSVSL 122 (467)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhH---hhccCccchHHHHHHHHHHHHHHHHHHHhc-----ccchH
Confidence 345555555322 222344455666666666666666 888887766666666655544444432111 11235
Q ss_pred hhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ 171 (394)
+..++.-++.|++.+..-.....+.+ .+|++ .++.+..|.++++.++.++.
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 55566666677776665555545444 56754 23445566666666665544
No 55
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.17 E-value=0.021 Score=55.95 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=52.7
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
....+.+...+.....-.+ .+|.+.|.-+..+.++..+..+.....+ .++..++..++.|++.+...
T Consensus 31 ~~~~~~~~~~~~~~~~g~l---~d~~g~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~ 97 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPM---ADSFGRKPVILGGTLVFALAAVACALAQ----------TIDQLIYMRFLHGLAAAAAS 97 (377)
T ss_pred HHHHHHHHHHHHHHhhchH---HhhcCChHHHHHHHHHHHHHHHHHHHHc----------cHHHHHHHHHHHHHHHHHHH
Confidence 3344555555655555555 7777655445555555554444443321 24444555666777777665
Q ss_pred hhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHH
Q 016145 139 GSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 139 ~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ 171 (394)
....++.. .+|++. .+-...+.++++.++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444 456542 2333455555555555443
No 56
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.034 Score=55.62 Aligned_cols=316 Identities=14% Similarity=0.139 Sum_probs=154.8
Q ss_pred HHhhcchHhhhccc-CCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCC
Q 016145 37 NAFITAVDYFGYLY-PAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSG 115 (394)
Q Consensus 37 N~~ita~~yf~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
|.+--|.++..+.+ -++.-...+..++.++.=+...++=.+ .+|.+.|.=+..|+.+..++.++....+
T Consensus 46 knF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~---sDr~npr~fm~~gLilsai~nil~Gfs~------- 115 (448)
T COG2271 46 KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVL---SDRSNPRYFMAFGLILSAIVNILFGFSP------- 115 (448)
T ss_pred HhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh---cccCCCceeehHHHHHHHHHHHHHhhhh-------
Confidence 44444555555443 122211233334444444556666667 8888888777777777666655554321
Q ss_pred CcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhH
Q 016145 116 SNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAH 190 (394)
Q Consensus 116 ~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~ 190 (394)
..++..++.++.|+.++..-.......+ -+|++ ..+-|.+-..++|-+...+-.+ +.+.++ .+- ..+
T Consensus 116 ---s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~~-~~w-~~~- 187 (448)
T COG2271 116 ---SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL--AFFAFH-GGW-RAA- 187 (448)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH--HHHHhc-cch-hHH-
Confidence 4555566666777777766655544433 45543 2333334444444444433322 111110 111 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchH------HHHHHHhhh---ccccccc-hhHHHHH-------HHhhHhHHHHHHHHh
Q 016145 191 FYFIVSTIIMLCCCLGSNLLHKLPV------MQQHYRLLI---DDALSSR-QAIWRVG-------RRIRLPAFGVILIYI 253 (394)
Q Consensus 191 ~yF~i~~~~~~~~~~~~~~l~r~p~------~~~~~~~~~---~~~~~~~-~~~~~v~-------k~i~~~~~~~fl~f~ 253 (394)
|+.-+++.+++++++++.++.+|- .+++.++.. +++++++ -+.|+++ |-+|..+++.+++|+
T Consensus 188 -f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 188 -FYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 233344455567777777765553 333322211 1112211 3334333 568899999999999
Q ss_pred hhhccc---cceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc--c-cchhHHHHHHHHHHHHHHHHHHhc--
Q 016145 254 VTLSIF---PGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP--K-SIKKAAWACTGRLVFYPLFAACLH-- 325 (394)
Q Consensus 254 vTl~vF---Pgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~--~-~~~~l~i~s~~R~~fiplf~~~~~-- 325 (394)
+=+.+- |-...+..+. +.--.-..+.+|-++-+.|-.+..|... . .+|........=.+++ .++.+
T Consensus 267 vR~gi~dW~p~YL~e~k~~---s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~---~~~~~w~ 340 (448)
T COG2271 267 VRYGINDWGPLYLSEVKGF---SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITA---SLVLYWL 340 (448)
T ss_pred HHHHHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHH---HHHHHHc
Confidence 876432 1111121111 1112233478999999999999988654 2 3333221111111111 11222
Q ss_pred CCCCCccchhHHHHHHHHhhccccchheeeeecCCC------CCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 326 GPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKT------VPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 326 ~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~------v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
.|. .|.+...++.+++|+. +|+|+- .+-.-|+.||+...+-=..|=..|+.+
T Consensus 341 ~~~--~~~~l~~~~l~~iGf~---------IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~ 398 (448)
T COG2271 341 APN--GSYLLDAILLFIIGFL---------IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL 398 (448)
T ss_pred CCC--ccHHHHHHHHHHHHHH---------HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHh
Confidence 222 1324445555666653 455552 333456666666655555555545444
No 57
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.14 E-value=0.091 Score=52.06 Aligned_cols=28 Identities=18% Similarity=-0.030 Sum_probs=21.6
Q ss_pred hhHHHHHhhhchhHHHHhhcchHhhhcc
Q 016145 22 YIIHFLLGAGNLLPWNAFITAVDYFGYL 49 (394)
Q Consensus 22 y~~f~l~G~~~llpwN~~ita~~yf~~~ 49 (394)
+..++.++...=+|++......+++-++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~ 30 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE 30 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5667777777888999999888777544
No 58
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.14 E-value=0.13 Score=51.76 Aligned_cols=118 Identities=8% Similarity=-0.072 Sum_probs=63.3
Q ss_pred chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchh
Q 016145 42 AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAY 120 (394)
Q Consensus 42 a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 120 (394)
+.+..++.+.-++ -......++.+...+.++..-.+ .+|+..|.-+..+.++..+..+..+..+ .+
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l---~dr~G~r~~~~~~~~~~~~~~~~~~~~~----------~~ 96 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIM---LAIIGARRWIAGIMVLWGIASTATMFAT----------GP 96 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHH---HHHhChHHHHHHHHHHHHHHHHHHHHhc----------CH
Confidence 4456665553221 12333344555555555555555 6666665545555555555544444321 13
Q ss_pred hhhhHHHHhhccchhhhchhhhhh-cCCCCHH----HHHHHHhcccchhhHHHHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGS-AGKLPKQ----YMQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~l-a~~fp~~----~~~a~~~G~g~sGv~~s~l~i 172 (394)
+..++.-++.|++.+....+...+ ...+|++ .++.+..|.+++++++..+.-
T Consensus 97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556777776665555553 4467864 345666777777777665543
No 59
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.13 E-value=0.15 Score=51.84 Aligned_cols=110 Identities=11% Similarity=0.029 Sum_probs=62.1
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc--ccCCCcchhhhhhHHHHhhccchh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR--NYSGSNGAYGVTVASVVTCGLADG 135 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~li~~~~~g~~~~ 135 (394)
.....+.+...+.+++.-.+ .+|+..|.-+..+.+++.++.+......... ...++...+...++.=++.|++.+
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l---~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYC---SNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVG 135 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHh
Confidence 44556667777777777777 7887776666666666655544433211100 001112234444566678889888
Q ss_pred hhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHH
Q 016145 136 LVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSIL 170 (394)
Q Consensus 136 ~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l 170 (394)
.......++.+ .+|++. +.....|.++++++..+.
T Consensus 136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~ 175 (479)
T PRK10077 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV 175 (479)
T ss_pred HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887777754 667653 333344444454444433
No 60
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.11 E-value=0.041 Score=56.29 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=62.7
Q ss_pred cchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcch
Q 016145 41 TAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGA 119 (394)
Q Consensus 41 ta~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (394)
...+++.+++.-+. ....+...+.+...+.....-.+ .+|+..|.-+..+.++..+..+...... .
T Consensus 41 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~ 107 (496)
T PRK03893 41 LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAM---GDRYGRRLAMVISIVLFSVGTLACGFAP----------G 107 (496)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHHHHHHh----------H
Confidence 34455555553221 12333344555555555555566 7776665545555555544444433211 2
Q ss_pred hhhhhHHHHhhccchhhhchhhhhh-cCCCCHHH----HHHHHhcccchhhHHHHHHH
Q 016145 120 YGVTVASVVTCGLADGLVGGSLIGS-AGKLPKQY----MQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 120 f~~~li~~~~~g~~~~~~q~s~~~l-a~~fp~~~----~~a~~~G~g~sGv~~s~l~i 172 (394)
++..++...+.|++.+..++....+ ...+|++. .+.+..|.+++++++..+.-
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677787777666655554 34567653 24455556666665554443
No 61
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.10 E-value=0.044 Score=57.78 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHhhHHhhhhhhhcc--cccccchhH-HHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 282 TVYNVSDFVGKSLTAV--YVPKSIKKA-AWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 282 ~~fn~gD~iGR~~~~~--~~~~~~~~l-~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
..+++|=..|-.+... .+.++.|+. .+.++...+++-+... .+|+- ++ ..+.+.++.|+.-|+....++..+
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~--~~~~n-~~--~~i~~~~l~g~giG~~~~~~~~~~ 430 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA--VRPDN-KN--AAIAFLVLAGFGIGGILVPAIVIA 430 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH--ccCCC-cc--hHHHHHHHHHHhHHHHHHHHHHee
Confidence 3455565555543322 122334554 3445555555544322 23332 11 234667788888899988888777
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.-.+++++-..+..++...=.+|=.+|..+-
T Consensus 431 ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 431 QLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred EeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5556667777777777777777777776554
No 62
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.07 E-value=0.08 Score=52.42 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=56.5
Q ss_pred chhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcc
Q 016145 32 NLLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWA 110 (394)
Q Consensus 32 ~llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 110 (394)
.....+....+.+.+.+++..++ ........+.+...+.+...-.+ .+|++.|.-+..+.+...+........
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l---~Dr~g~r~~l~~~~~~~~i~~~~~~~~--- 88 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKI---ADRSGRKPVAIPGAALFIIASLLCSLA--- 88 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHH---HHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 34445555566666666553222 22333444555555655555555 777766544455554444444333221
Q ss_pred cccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH
Q 016145 111 RNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ 151 (394)
Q Consensus 111 ~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~ 151 (394)
+ .++..++.-.+.|++.+..+....++.. .+|++
T Consensus 89 ----~---~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 123 (392)
T PRK10473 89 ----E---TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR 123 (392)
T ss_pred ----C---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH
Confidence 1 1333444556677777777766666655 56654
No 63
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.05 E-value=0.018 Score=56.16 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=27.8
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVM 374 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~ 374 (394)
+.....+++.++.+|......+.+..+..++++|...-.+.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 33455677778888888777777777766777766544443
No 64
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.01 E-value=0.044 Score=53.50 Aligned_cols=115 Identities=9% Similarity=0.078 Sum_probs=58.2
Q ss_pred chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchh
Q 016145 42 AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAY 120 (394)
Q Consensus 42 a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 120 (394)
..+.+++.+.-+. ........+.+...+.....-++ .+|+..|.-+..+.+...+..+.. . .+ .+
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~-~-------~~---~~ 87 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWL---ARRFGEERSVAAGLLLIAAGILIR-S-------AP---GT 87 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhCchHHHHHHHHHHHHHHHHH-H-------hc---cH
Confidence 4455665553221 22334445666666666666666 777776655555554443333221 1 01 13
Q ss_pred hhhhHHHHhhccchhhhchhhhhhcC-CCCHH---HHHHHHhcccchhhHHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ---YMQAVFAGTASSGVLVSIL 170 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~---~~~a~~~G~g~sGv~~s~l 170 (394)
+..++...+.|++.+..+...-.+.. .+|++ ..+.+..++++++.++..+
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666665544433333 33332 3455556666666655544
No 65
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.99 E-value=0.075 Score=52.53 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=41.6
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
......+.+...+.+.+.-.+ .+|+..|..+..+..+..+........+ .++..++.-++.|++.+.
T Consensus 44 G~~~s~~~l~~~~~~~~~g~l---~dr~g~k~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~G~~~~~ 110 (381)
T PRK03633 44 GVVSSSYFTGNLVGTLLAGYV---IKRIGFNRSYYLASLIFAAGCAGLGLMV----------GFWSWLAWRFVAGIGCAM 110 (381)
T ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666 7777776666666666555544433211 255556666777777666
Q ss_pred hchh
Q 016145 137 VGGS 140 (394)
Q Consensus 137 ~q~s 140 (394)
....
T Consensus 111 ~~~~ 114 (381)
T PRK03633 111 IWVV 114 (381)
T ss_pred HHHH
Confidence 5443
No 66
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.91 E-value=0.032 Score=55.25 Aligned_cols=56 Identities=18% Similarity=0.018 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHH-HHHHHHHHHHHHHHHHHH
Q 016145 332 TEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIA-AIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 332 ~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~a-g~~~~~~l~~Gi~~Gs~~ 388 (394)
+.+..++..+++|++.|......+.+..+. +++++..+ +....+....|..+|..+
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999988777766665554 33333332 222234444555555543
No 67
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.88 E-value=0.34 Score=48.65 Aligned_cols=99 Identities=9% Similarity=0.049 Sum_probs=54.9
Q ss_pred hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhch
Q 016145 60 SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGG 139 (394)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~ 139 (394)
...+.+...+.++..-.+ .+|+..|.-+..+..+..++.+..... ..++..++.-++.|++.+....
T Consensus 57 ~s~~~~~~~~~~~~~G~l---~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r~l~Gi~~~~~~~ 123 (413)
T PRK15403 57 VSLYLAGGMALQWLLGPL---SDRIGRRPVLITGALIFTLACAATLFT----------TSMTQFLIARFIQGTSICFIAT 123 (413)
T ss_pred HHHHHHHHHHHHHhhhHH---HHHcCchHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665566 777777665666665555544444321 1244555666667777766555
Q ss_pred hhhhhc-CCCCHHH----HHHHHhcccchhhHHHHHH
Q 016145 140 SLIGSA-GKLPKQY----MQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 140 s~~~la-~~fp~~~----~~a~~~G~g~sGv~~s~l~ 171 (394)
..+... ..+|++. ++.+..+.+++.+++.++-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443 3566532 3344555555666554443
No 68
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.84 E-value=0.26 Score=49.10 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=68.2
Q ss_pred HHHHHhhhchhHHHHhhcchHhh-hcc-cCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccC-----ccee-hhHHHH
Q 016145 24 IHFLLGAGNLLPWNAFITAVDYF-GYL-YPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLS-----YRLR-MNLGFS 95 (394)
Q Consensus 24 ~f~l~G~~~llpwN~~ita~~yf-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~r-i~~~~~ 95 (394)
.|+.++...=+|.....++.+.| +++ ++.++.. .+..... + .+.+.+.-.+ .+|.+ .|.| +..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~-~-~~~~~l~g~~---~Dr~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 3 AMLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQ-A-YIFKFLWAPL---MDRYTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH-H-HHHHHHHHHH---HHcccccCCCcchhHHHHHHH
Confidence 37788888889999999887666 332 2222221 1122222 2 3444444444 77763 2333 334444
Q ss_pred HHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHH
Q 016145 96 MFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSIL 170 (394)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l 170 (394)
...+++..+.... +...++...+..++.+...+......-+++. ..|++ +....+.|++++.+++..+
T Consensus 77 ~~~l~~~~l~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 77 GLAASIAAMAFCP-------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 4444444433211 1122333344434445555544444333333 34543 5566677888877776655
Q ss_pred HH
Q 016145 171 RI 172 (394)
Q Consensus 171 ~i 172 (394)
-.
T Consensus 150 ~~ 151 (402)
T PRK11902 150 AL 151 (402)
T ss_pred HH
Confidence 44
No 69
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.79 E-value=0.047 Score=54.10 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=57.8
Q ss_pred HHHHHhhHHhhhhhhhcc-cccccchhHHHH----HHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 280 LITVYNVSDFVGKSLTAV-YVPKSIKKAAWA----CTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~-~~~~~~~~l~i~----s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
......++..++...... .++.++|+++.. ..+|....+ +.++.+..+..+.+.|++-|-+....
T Consensus 245 l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 245 LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG----------AIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH----------hHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777766543 233344544332 223332221 12344556778999999999999998
Q ss_pred eeecCCCCCchhhhHHHHH-HHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIV-MILSLGIGLVGGSVLG 389 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~-~~~~l~~Gi~~Gs~~s 389 (394)
|.+..+. ++++|..+-.+ ...+...|..+|+.++
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765 55555443333 2345566666666554
No 70
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.78 E-value=0.14 Score=51.05 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=55.1
Q ss_pred HHHHHhhHHhhhhhhhcccccc-cchhHH-H-HHHHHHHH-HHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheee
Q 016145 280 LITVYNVSDFVGKSLTAVYVPK-SIKKAA-W-ACTGRLVF-YPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIM 355 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~~-~~~~l~-i-~s~~R~~f-iplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~m 355 (394)
....+.++..+|+....+...+ ++|+.. . ..++-.+. +.+...-. ..-++.+...+..+++|+..|.......
T Consensus 262 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 338 (402)
T TIGR00897 262 IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ---HFGHSFAVALIIAIALGIFLAGYVPLAA 338 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899998887654332 223322 1 11222211 11111111 1112344455667777877765433221
Q ss_pred eecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 356 ILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 356 i~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+ +.+|++|..+..+.+.....|-.+|..+.
T Consensus 339 -~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 339 -VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred -HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 34567888888888888887777766544
No 71
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.75 E-value=0.066 Score=54.46 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
+...+.+...+.+...-.+ .+|+..|.-+..+..+..+..++.+.... ..++..++.-++.|++.+...
T Consensus 81 ~~s~~~~~~~~~~~~~g~l---~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYL---AGKYVFKWSIGIGMFLSSVISIVIPWAAG--------GGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred HHHHHHHHHHHHHcchHHH---HHHhCcchhhHHHHHHHHHHHHHHHHHHH--------cCchHHHHHHHHHHHhcccch
Confidence 3445666666666666666 77776665555555554444444332111 124445556667777777777
Q ss_pred hhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHH
Q 016145 139 GSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSIL 170 (394)
Q Consensus 139 ~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l 170 (394)
.....+.+ .+|++. .+....|..++++++..+
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l 186 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555 567543 344445555555555444
No 72
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.72 E-value=0.19 Score=51.86 Aligned_cols=312 Identities=16% Similarity=0.142 Sum_probs=145.6
Q ss_pred cchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHH-HHHHhhhhcccccCCCcchhhhhhHHHHhhcc--
Q 016145 56 EKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALS-LLVTPIIDWARNYSGSNGAYGVTVASVVTCGL-- 132 (394)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~-- 132 (394)
++..+.+..+..++..++.+.+|+..++-++|.|+...+.+..+. ......++ .+ . ++..+++.++..+
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-----~~-~--~~~~~~l~iia~v~~ 140 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-----PG-Q--WWLALVLFIIANVGY 140 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-----cc-h--HHHHHHHHHHHHHHH
Confidence 455567778888888888899988888888888887766554432 22222111 11 1 2333333333333
Q ss_pred -chhhhchhhhhhcCCCCHH---------------------------HHHHHHhccc-chhhHHHHHHHHHHHhCCCCCC
Q 016145 133 -ADGLVGGSLIGSAGKLPKQ---------------------------YMQAVFAGTA-SSGVLVSILRIITKASLPQTPQ 183 (394)
Q Consensus 133 -~~~~~q~s~~~la~~fp~~---------------------------~~~a~~~G~g-~sGv~~s~l~ii~~~~~~~~~~ 183 (394)
++-+.-++.+...+.-.++ -++++-.+-| ++|++.-++.+......+++.+
T Consensus 141 ~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~ 220 (477)
T PF11700_consen 141 EASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTAS 220 (477)
T ss_pred HHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 3344445555544443333 3444444444 3344444444433222222211
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccc--cccchhHHHHHHHhh------HhHHHHHH--HHh
Q 016145 184 GLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDA--LSSRQAIWRVGRRIR------LPAFGVIL--IYI 253 (394)
Q Consensus 184 ~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~--~~~~~~~~~v~k~i~------~~~~~~fl--~f~ 253 (394)
+.......+...++-..+.++..++.+++.|--+. .++.++ ....+++++.+|+++ .++++-++ .=.
T Consensus 221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~---~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~ 297 (477)
T PF11700_consen 221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRP---LPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGV 297 (477)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---CCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22222333445555566777777777765432100 000000 011233444444333 22222111 000
Q ss_pred hhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc---ccchhHHHHHHHHHHHHHHHHHHhcCCCC-
Q 016145 254 VTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP---KSIKKAAWACTGRLVFYPLFAACLHGPKW- 329 (394)
Q Consensus 254 vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~---~~~~~l~i~s~~R~~fiplf~~~~~~~~~- 329 (394)
.|...+=++... +.-..+.--..+..++=|+.-.+|-.+..+... +++++.+..++.=...+|+.-+.-..+..
T Consensus 298 ~ti~~~~~i~a~--~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~ 375 (477)
T PF11700_consen 298 NTIISFAGIYAT--EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF 375 (477)
T ss_pred HHHHHHHHHHHH--HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 122111111111 000011112344556667777777766554322 22235555555444455554332112222
Q ss_pred -CccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHH
Q 016145 330 -LKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLV 383 (394)
Q Consensus 330 -~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~ 383 (394)
+++.+.++++-.+.|+..|-..+.+=.+-.+ .-|++|| +.+.+++-..|=.
T Consensus 376 g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~-LiP~g~e--~efFgly~i~gk~ 427 (477)
T PF11700_consen 376 GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSR-LIPPGRE--AEFFGLYAITGKA 427 (477)
T ss_pred CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hCCCchh--hHHHHHHHHHHHH
Confidence 4666778888899999998777665333223 2334454 5555555555543
No 73
>PRK09669 putative symporter YagG; Provisional
Probab=96.71 E-value=0.33 Score=49.13 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhh-------hHHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEG-------EIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~er-------e~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+..++..++.|+..|-.........++.+|.+|. .......+++..+|..+|..++
T Consensus 320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888876666655555665553332 1334566667777877776654
No 74
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.65 E-value=0.47 Score=47.42 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=31.6
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
..+...+++...|-..........+.+++++|..+..+.++....|-.+|..+
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 33445566665553333333334455667788877777787777777766543
No 75
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.51 E-value=0.16 Score=51.09 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHhhccccchheeeeecCCCCCchhh-------hHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 331 KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEG-------EIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 331 ~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~er-------e~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
++.+..++...+.|+..|-........-++.++.+|+ .....+.++..-.|..+|..+...
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4556778889999999988887777777776664332 244556666777777776665543
No 76
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.46 E-value=0.17 Score=50.42 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=75.8
Q ss_pred HHHHHhhhchhHHHHhhc-chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHH
Q 016145 24 IHFLLGAGNLLPWNAFIT-AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSL 101 (394)
Q Consensus 24 ~f~l~G~~~llpwN~~it-a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 101 (394)
...+.|+ +..++...++ ..+-.++++.-++ ........+.+...+.+...-.+ .+|+..|.-+..+..+..++.
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l---~dr~G~r~~l~~~~~l~~~~~ 88 (393)
T PRK09705 13 VLVLIGL-NMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWL---HQHVSERRSVAISLLLIAVGA 88 (393)
T ss_pred HHHHHHH-HcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHH---HHHhCchHHHHHHHHHHHHHH
Confidence 3444454 3334554443 4566666664222 22334444556666666666666 788777777778887777777
Q ss_pred HHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCC-CCHH---HHHHHHhcccchhhHHHH
Q 016145 102 LVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGK-LPKQ---YMQAVFAGTASSGVLVSI 169 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~-fp~~---~~~a~~~G~g~sGv~~s~ 169 (394)
+..+..+ .+...++.-++.|++.+..+.....+... +|++ .++.+..|+..++.+...
T Consensus 89 ~~~~~a~----------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~ 150 (393)
T PRK09705 89 LMRELYP----------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAA 150 (393)
T ss_pred HHHHHCc----------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHH
Confidence 7666432 24455667778888888877776666554 4433 334444444444444433
No 77
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.39 E-value=0.63 Score=46.36 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=47.6
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
......+.++..+.+.+.=.+ .+|++.|.-+..+..+..+..+...... + . ++.-++.|++.+.
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~l---aDr~grr~vl~~~~~~~~~~~~~~~~~~------~----~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAF---ADSFPKGRVMFIANGIKLLGCLLMLFGI------H----P---LLAYGLVGIGAAA 104 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHh---hhccCCchhhHHHHHHHHHHHHHHHHHH------H----H---HHHHHHHHHHHHH
Confidence 444556666666665555555 8888877666666666554433322110 1 1 2334567888888
Q ss_pred hchhhhhhcC-CCCHH
Q 016145 137 VGGSLIGSAG-KLPKQ 151 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~ 151 (394)
......++.. .+|++
T Consensus 105 ~~pa~~a~i~~~~~~~ 120 (393)
T PRK11195 105 YSPAKYGILTELLPGE 120 (393)
T ss_pred HHHHHHHHHHHHcCHH
Confidence 8888887765 57754
No 78
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.28 E-value=0.22 Score=49.45 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHhhccccchheeeeecCCCCCchhh
Q 016145 332 TEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEG 367 (394)
Q Consensus 332 ~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~er 367 (394)
+.+...+..++.|+..+......+-+.++..+++.+
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLS 341 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceE
Confidence 334455666777777666655555555555444433
No 79
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.27 E-value=0.38 Score=47.75 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=76.5
Q ss_pred HHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccC
Q 016145 36 WNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYS 114 (394)
Q Consensus 36 wN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 114 (394)
|-.+--..+..++++.-++ -......++.+...+.++..-.+ .+|+. |.|+..+.....+.... ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l---~Dr~g-rr~~~~~~~~~~~~~~~-~~~~------ 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLL---LDRAF-KRWFLFGSLATFAAAAG-RLLD------ 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcc-chHHHHHHHHHHHHHHH-HHHH------
Confidence 4444444444455442211 12233444555555555555555 66665 33443333222221111 1110
Q ss_pred CCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhH
Q 016145 115 GSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAH 190 (394)
Q Consensus 115 ~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~ 190 (394)
...+...++.-++.|++.+..-.+....+..+|++ .++-+..|++++++++.++.-..... . .+..
T Consensus 76 --~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~--gWr~- 145 (368)
T TIGR00903 76 --PFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----G--GLQL- 145 (368)
T ss_pred --hccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c--chHH-
Confidence 01366666777777877776555555566778854 34555677777777776554433211 1 1332
Q ss_pred HHHHHHHHHHHHHHHHHHhhccch
Q 016145 191 FYFIVSTIIMLCCCLGSNLLHKLP 214 (394)
Q Consensus 191 ~yF~i~~~~~~~~~~~~~~l~r~p 214 (394)
.|+..+.+-.+.+++.+..++++|
T Consensus 146 ~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 146 LIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333334444344455555565544
No 80
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.27 E-value=0.44 Score=49.18 Aligned_cols=138 Identities=11% Similarity=0.037 Sum_probs=69.5
Q ss_pred hhHHHHHhhhchhHHHHhhcchHhhhcccCCCCcc--chhhhHhHHHHHHHHHHHHHhccCCccc-----Cccee-hhHH
Q 016145 22 YIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVE--KVFSVAYMTSSLLVLVLVICWGGWGSKL-----SYRLR-MNLG 93 (394)
Q Consensus 22 y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~r-i~~~ 93 (394)
+..++++|..+-+|+-......+.+.... +.+.. ..++. ...+ .+.+.+.-.+ .+|. ..|.+ +..+
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~-~~~~-~~~~~l~gpl---~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSL-VGQA-YVFKFLWSPL---MDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHH-HHHHHHHHHH---HHcccccCCCCchHHHHHH
Confidence 67888999999999987776554442221 22221 11111 1111 1333443344 5554 22222 3344
Q ss_pred HHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHH
Q 016145 94 FSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVS 168 (394)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s 168 (394)
.+...+++......+ +...++...+...+.|++.+..+...-++.. .+|++ ..+....|..++.+++.
T Consensus 88 ~i~~~~~~~~~a~~~-------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~ 160 (491)
T PRK11010 88 QLLLLVAIAAMGFLE-------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSG 160 (491)
T ss_pred HHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 444434433333211 1233555555666677777766666655554 46633 34456667777766665
Q ss_pred HHHH
Q 016145 169 ILRI 172 (394)
Q Consensus 169 ~l~i 172 (394)
.+-.
T Consensus 161 ~l~~ 164 (491)
T PRK11010 161 GLAL 164 (491)
T ss_pred HHHH
Confidence 5443
No 81
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.13 Score=53.21 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=116.4
Q ss_pred cchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchh
Q 016145 56 EKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADG 135 (394)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~ 135 (394)
-+.....+.++..++++....+ .+|+|. .| ++....++-.++.++... .-.++..+++=++.|...+
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L---~~r~~l-s~---~l~~~~~~w~~~~~~~~~------~~s~~~~ialr~llGl~es 149 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLL---GDRFPL-SK---GLSVSGILWGLFGFLTAA------VHSFPGLIALRFLLGLFES 149 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHH---HHhCCh-HH---HHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHhc
Confidence 3445555666666677766677 888882 22 222222222222211111 1125555566666776666
Q ss_pred hhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhh-HHHHHHHHHHHHHHHHHHHh
Q 016145 136 LVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSA-HFYFIVSTIIMLCCCLGSNL 209 (394)
Q Consensus 136 ~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~-~~yF~i~~~~~~~~~~~~~~ 209 (394)
..=.+.-.+.+ -|.++ -+.-+.+.++++++++++++--..-.. ......+- +.|...+++.....+++|+.
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~---~~~~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN---GSGGLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc---CCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence 55555555555 45532 357788888888888888876432221 11111222 23444455555667788888
Q ss_pred hccchHHHH---HHH------hhh-ccc-----cccchhHHHHHH--HhhHhHHHHHHHHhhhhccc---cceeeeeccc
Q 016145 210 LHKLPVMQQ---HYR------LLI-DDA-----LSSRQAIWRVGR--RIRLPAFGVILIYIVTLSIF---PGFIGEDLES 269 (394)
Q Consensus 210 l~r~p~~~~---~~~------~~~-~~~-----~~~~~~~~~v~k--~i~~~~~~~fl~f~vTl~vF---Pgv~~~~~~~ 269 (394)
++..|.... ..+ +.+ +++ +.++..+++.+| ++|++.++.+....+...++ |-+..+ .
T Consensus 227 lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~---~ 303 (495)
T KOG2533|consen 227 LPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS---N 303 (495)
T ss_pred ecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc---C
Confidence 998887321 111 111 111 123455667766 67888888777777655221 212111 0
Q ss_pred ccCCCchHHHHHHHHhhHHhhhhhhhccccc
Q 016145 270 KLLRDWYPVLLITVYNVSDFVGKSLTAVYVP 300 (394)
Q Consensus 270 ~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~ 300 (394)
...++-..-.+...+-+++.+|-.++.+...
T Consensus 304 ~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsd 334 (495)
T KOG2533|consen 304 GGYSELQANLLSTPYDVGGIVGLILAGYLSD 334 (495)
T ss_pred CCcChHHhccccchHHhhhHHHHHHHHHHHH
Confidence 0011112223345566677777777766543
No 82
>PRK09952 shikimate transporter; Provisional
Probab=95.98 E-value=0.57 Score=47.44 Aligned_cols=90 Identities=20% Similarity=0.091 Sum_probs=46.0
Q ss_pred CcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHH
Q 016145 81 GSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQA 155 (394)
Q Consensus 81 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a 155 (394)
.+|+..|.-+..+..+..++.+......... ..........+++=.+.|++.+..-.+...+.+ .+|++ +...
T Consensus 88 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~ 165 (438)
T PRK09952 88 GDRLGRKRMLMLTVWMMGIATALIGLLPSFS--TIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSG 165 (438)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHH
Confidence 6676666556666666665555544322100 000001123344455677766655444444443 46654 4566
Q ss_pred HHhcccchhhHHHHHHH
Q 016145 156 VFAGTASSGVLVSILRI 172 (394)
Q Consensus 156 ~~~G~g~sGv~~s~l~i 172 (394)
...|.+++.+++..+-.
T Consensus 166 ~~~g~~~G~~l~~~~~~ 182 (438)
T PRK09952 166 VQVGYGVGLLLSTGLVS 182 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777655443
No 83
>PRK10054 putative transporter; Provisional
Probab=95.95 E-value=0.52 Score=46.98 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhh
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLI 142 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~ 142 (394)
+.+...+.+...-.+ .+|+..|.-+..+.....+..+..+..+ .++..+++..+.|.+.+......-
T Consensus 52 ~~~~~~~~~~~~G~l---~Dr~g~k~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 52 ALTIGVVFSLGFGIL---ADKFDKKRYMLLAITAFASGFIAIPLVN----------NVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred HHHHHHHHHHHHHHH---HhhcCcchhHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 7887776555555555544444443322 133333333444544444443343
Q ss_pred hhc-CCCCHHHH----HHHHhcccchhhHHHHHH
Q 016145 143 GSA-GKLPKQYM----QAVFAGTASSGVLVSILR 171 (394)
Q Consensus 143 ~la-~~fp~~~~----~a~~~G~g~sGv~~s~l~ 171 (394)
... ...|++.. +-...+..+++.++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 34555432 223344445555544433
No 84
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.94 E-value=0.12 Score=49.95 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=39.6
Q ss_pred hhhhhhHHHHhhccchhhhchhhhhhcCCC-CH----HHHHHHHhcccchhhHHHHHHH
Q 016145 119 AYGVTVASVVTCGLADGLVGGSLIGSAGKL-PK----QYMQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 119 ~f~~~li~~~~~g~~~~~~q~s~~~la~~f-p~----~~~~a~~~G~g~sGv~~s~l~i 172 (394)
.|...++..++.|.+.++.|.+.=.+.+.. |+ +.++-...-+|++.+++.++--
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~ 67 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG 67 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 488889999999999999999998888755 43 3345555556666666555444
No 85
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.2 Score=52.07 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=60.0
Q ss_pred HHHHHhhHHhhhhhhhcccccc---cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 280 LITVYNVSDFVGKSLTAVYVPK---SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~~---~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
+..+-++.|.+||....+.... +++++...++.......+++-.. ++-+..+....++|++-|+..++.-.
T Consensus 338 l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------~~~~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 338 LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA------TTYVGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998875542 23334444444443333222111 22245778889999999999888865
Q ss_pred ecCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMILSLGIGLVGG 385 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~~~l~~Gi~~G 385 (394)
...+-+..++-.-|-.+..++..++..+|
T Consensus 412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g 440 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGLLLLFQGIGALVG 440 (509)
T ss_pred HHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence 55555554444555555555555444444
No 86
>PRK09848 glucuronide transporter; Provisional
Probab=95.76 E-value=0.21 Score=50.66 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=56.9
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhh-hcccCCCCccchh-hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYF-GYLYPAKHVEKVF-SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMF 97 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf-~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~ 97 (394)
..+..+.+........+..+.+...|| ++.+..++....+ .....+..++...+..++ .+|++.+..+..+.++.
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~r~g~~~~~~~g~~~~ 304 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGM---VARIGKKNTFLIGALLG 304 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHH
Confidence 334444444444555555555555555 4333322211111 122233344444455556 77777666566666655
Q ss_pred HHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCC
Q 016145 98 ALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGK 147 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~ 147 (394)
.+..+..... + ...++...+...+.|++.+.......++.+.
T Consensus 305 ~i~~~~~~~~-------~-~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~ 346 (448)
T PRK09848 305 TCGYLLFFWV-------S-VWSLPVALVALAIASIGQGVTMTVMWALEAD 346 (448)
T ss_pred HHHHHHHHHc-------C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433321 1 1123334444556677777777666666543
No 87
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.73 E-value=0.12 Score=51.91 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=19.0
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhh
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGE 368 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere 368 (394)
+.......+.|+..+-.....+.+.++..+++.+.
T Consensus 316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a 350 (420)
T PRK09528 316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA 350 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee
Confidence 44445566666666555554455555555555444
No 88
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.057 Score=53.69 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=65.6
Q ss_pred hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhch
Q 016145 60 SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGG 139 (394)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~ 139 (394)
.+.+-.-.++-.+++...|-..+|+.++.-+..|++.+..+.++...-+ .+..+.+.=.+-|++++....
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~----------sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN----------SYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc----------hhHHHHHHHHHhhhhHHHHHh
Confidence 3333333444445566665557889999999999999988888876522 356667777889999999999
Q ss_pred hhhhhcC-CCCHHHHHHHHhcccch
Q 016145 140 SLIGSAG-KLPKQYMQAVFAGTASS 163 (394)
Q Consensus 140 s~~~la~-~fp~~~~~a~~~G~g~s 163 (394)
+.+++.+ .||++--.+-..|.+.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialg 203 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALG 203 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHH
Confidence 9999877 78877754444444433
No 89
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.51 E-value=1.5 Score=45.11 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=70.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
+.+-.++....+++++-.-.+ .+|+..|..+..+..+..+..+++|..... .++..+++=++.|++.+.
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l---~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~--------~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYL---ADKFGARRVFFISGLISALLTLLTPLAASI--------GFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHH---HHHcCchHHHHHHHHHHHHHHHHHHHHHHh--------cchhhHHHHHHhHHHHhH
Confidence 444556667777777766666 777777777778888888889999986541 244557777788888888
Q ss_pred hchhhhhhcCCCCHHHHHHHHhcccchhh-HHHHHHH
Q 016145 137 VGGSLIGSAGKLPKQYMQAVFAGTASSGV-LVSILRI 172 (394)
Q Consensus 137 ~q~s~~~la~~fp~~~~~a~~~G~g~sGv-~~s~l~i 172 (394)
.-.++-++.+...|.--.+...+...+|- +++++.+
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~m 181 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITM 181 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887655444444444444444 4444444
No 90
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.50 E-value=0.3 Score=49.22 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=60.1
Q ss_pred HHHHHHhhHHhhhhhhhcccc-cccchhHHHHHH-HHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYV-PKSIKKAAWACT-GRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~-~~~~~~l~i~s~-~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
....+..+++.+++....+.. ..++|+++..+. .-.+.. ..+....+.. .+.+..++..++.|+..|........
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~--~l~~~~~~~~-~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRF--GFFAYGDPEY-FGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH--HHHHHcCcch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888887765422 223454443333 221111 1111111111 11123455677888888777666666
Q ss_pred ecCCCCCchhhhHHHHHHH-HHHHHHHHHHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMI-LSLGIGLVGGSVLG 389 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~-~~l~~Gi~~Gs~~s 389 (394)
+..+..++++|..+-.+.+ ....+|..+|..++
T Consensus 332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6667777788887777775 45566766666554
No 91
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.48 E-value=3.2 Score=42.40 Aligned_cols=135 Identities=7% Similarity=0.034 Sum_probs=61.5
Q ss_pred hhchhHHHHhhc-chHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcc--e-e--hhHHHHHHHHHHHH
Q 016145 30 AGNLLPWNAFIT-AVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYR--L-R--MNLGFSMFALSLLV 103 (394)
Q Consensus 30 ~~~llpwN~~it-a~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~-r--i~~~~~~~~~~~~~ 103 (394)
++..+.|+.+.+ ..-||.+.+ +-+ .........++.+.-.+..+..|...+|.+.| . | +..+.+...+++.+
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~-Gls-~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVV-GLS-VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 445566666555 334544432 111 12334445555555555555665555544222 1 2 33343333333222
Q ss_pred HhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCH----HH-HHHH-HhcccchhhHHHHH
Q 016145 104 TPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPK----QY-MQAV-FAGTASSGVLVSIL 170 (394)
Q Consensus 104 ~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~----~~-~~a~-~~G~g~sGv~~s~l 170 (394)
+-... +.++...++..++...+.+++.+..+....++.+.+-+ +- ..++ +.+..++|.+.+.+
T Consensus 94 lf~~p----~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 94 LFSAH----LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHcCC----CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21000 11222233333444445566777766666666554432 11 2444 56666666766554
No 92
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.28 E-value=0.39 Score=48.39 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=78.0
Q ss_pred cchhhHHHHHhhhchhHHHHhhcchHhhhcc-cCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHH
Q 016145 19 KVAYIIHFLLGAGNLLPWNAFITAVDYFGYL-YPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMF 97 (394)
Q Consensus 19 ~~~y~~f~l~G~~~llpwN~~ita~~yf~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~ 97 (394)
|.-+..++..-....+.++...+...||.+. ..+++..+.+...+.++.++...+..++ .+|+..+.-...+..+.
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l---~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRL---SKRFGKKKVYIIGLLLA 300 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHH---HHHccceeehhhhHHHH
Confidence 3444555555555566777777666777544 4444556667777888888888888888 88888877777777777
Q ss_pred HHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCC
Q 016145 98 ALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGK 147 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~ 147 (394)
++..+....+.. ...+..++..++.|++.+.......++.+-
T Consensus 301 ~~~~~~~~~~~~--------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad 342 (428)
T PF13347_consen 301 ALGFLLLFFLGP--------GSPWLVLILFILAGIGYGAFFVIPWAMLAD 342 (428)
T ss_pred HHHHHHHHHHHh--------hhHHHHHHHHHHhHhhhccccccccccccc
Confidence 776666554331 234556677777777777776666555553
No 93
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.98 E-value=3.3 Score=42.54 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCC
Q 016145 69 LVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKL 148 (394)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~f 148 (394)
+.++..-.+ .+|+..|.-...+..+..+..+..+.... +....+...+++-++.|++.+..-++.-.....|
T Consensus 85 l~rip~G~l---~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~-----~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wf 156 (462)
T PRK15034 85 LLRVPYSFM---VPIFGGRRWTVFSTAILIIPCVWLGIAVQ-----NPNTPFGIFIVIALLCGFAGANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHHHHc-----ccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHC
Confidence 334444444 77766665445555444444444443110 1123477777777888887554444444445568
Q ss_pred CHH
Q 016145 149 PKQ 151 (394)
Q Consensus 149 p~~ 151 (394)
|++
T Consensus 157 p~~ 159 (462)
T PRK15034 157 PKA 159 (462)
T ss_pred CHh
Confidence 876
No 94
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=94.90 E-value=2.8 Score=43.05 Aligned_cols=254 Identities=13% Similarity=0.029 Sum_probs=114.7
Q ss_pred hhhhhHHHHhhccchhhhchhhhhhcCCCCH------HHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 016145 120 YGVTVASVVTCGLADGLVGGSLIGSAGKLPK------QYMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYF 193 (394)
Q Consensus 120 f~~~li~~~~~g~~~~~~q~s~~~la~~fp~------~~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF 193 (394)
....++.=.+.+.+-+...-.-=++.+.+-+ +..+.-+.+.+.++.++++.-.......++++ ...-|+
T Consensus 112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~-----~~~g~~ 186 (467)
T COG2211 112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD-----KALGYQ 186 (467)
T ss_pred hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----chhhHH
Confidence 3333444444555555555544445544432 23456677777777888888864444433221 134444
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHhhhc---cccccchhHH---HHHHHhhHhHHHH--HHHHh----hhhccccc
Q 016145 194 IVSTIIMLCCCLGSNLLHKLPVMQQHYRLLID---DALSSRQAIW---RVGRRIRLPAFGV--ILIYI----VTLSIFPG 261 (394)
Q Consensus 194 ~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~---~~~~~~~~~~---~v~k~i~~~~~~~--fl~f~----vTl~vFPg 261 (394)
....++.++.++++..--++ ..|+..| .+++.+.+.+ ...+++++...-+ ++.++ +.-++++-
T Consensus 187 ~~~~~~~vi~~i~~l~~~~~-----v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~y 261 (467)
T COG2211 187 GTALVLGVIGVILLLFCFFN-----VKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVY 261 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 44444444333332221111 1111111 1111233333 3334555443322 22222 22223322
Q ss_pred eeeeecccccCCCchHHHHHHHHhhHHhhhhhh-hcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHH
Q 016145 262 FIGEDLESKLLRDWYPVLLITVYNVSDFVGKSL-TAVYVPKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLT 340 (394)
Q Consensus 262 v~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~-~~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~ 340 (394)
..... -+..++.+.........+-.+|-.+ +.+.++..+|+++.... ++.+..-......| -++-+..++..
T Consensus 262 y~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~--~~~~i~~~~~~f~~--~~~~~l~~~~~ 334 (467)
T COG2211 262 YVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL--LLLAVGYLLLYFTP--AGSVVLIVVAL 334 (467)
T ss_pred eEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH--HHHHHHHHHHHhhc--CcchHHHHHHH
Confidence 22221 1123555555555555555554443 22333334555544432 11110000000112 12333444555
Q ss_pred HHHhhccccchheeeeecCCCCCchh-h------hHHHHHHHHHHHHHHHHHHHHHH
Q 016145 341 SMLGFTNGYLTSVIMILAPKTVPVAE-G------EIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 341 ~l~gltnGy~~t~~mi~~p~~v~~~e-r------e~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
++.++-.|-...+.-..-|+.+|.+| | .+.-..++|+.=.|..+|+.+.-
T Consensus 335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666788777433 1 35566788888888888775543
No 95
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=94.87 E-value=1.7 Score=44.12 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=86.6
Q ss_pred CcccchhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHH
Q 016145 16 DTYKVAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFS 95 (394)
Q Consensus 16 d~~~~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~ 95 (394)
.|++.+-+.|-++-.++-+-|+.+-.-.||.++.|.+.+..-++++.|++..+...+...++ .+|...|.-...+-+
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~---ldk~GLR~a~llgt~ 117 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWI---LDKFGLRTALLLGTV 117 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHh---hcccchHHHHHHHHH
Confidence 35667778888999989899999999999998888766677899999999999999999999 888888777777766
Q ss_pred HHHHHHHHHhhhhcccccCCCcchhh--hhhHHHHhhccchhhhchhhhhh-----cCCCCHHH
Q 016145 96 MFALSLLVTPIIDWARNYSGSNGAYG--VTVASVVTCGLADGLVGGSLIGS-----AGKLPKQY 152 (394)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~f~--~~li~~~~~g~~~~~~q~s~~~l-----a~~fp~~~ 152 (394)
+..+.-.+=.+.. +..-...|+ +++..-.+ ++..|.-++++ +.-||++-
T Consensus 118 ln~iGa~Ir~iss----~p~v~~~f~~~l~~~Gq~i----aa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 118 LNGIGAWIRLISS----LPFVPPLFRRPLTHTGQSI----AAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred HHHHHHHHhhhcc----CccccccchhhhhHHhHHH----HHHhhhHhhccccHHHHhhCCcch
Confidence 6655433322211 110112333 55555444 44556556666 23466543
No 96
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.84 E-value=1.3 Score=44.30 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHhhhchhHHHHhhcchHhhhc-ccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHH
Q 016145 25 HFLLGAGNLLPWNAFITAVDYFGY-LYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLV 103 (394)
Q Consensus 25 f~l~G~~~llpwN~~ita~~yf~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 103 (394)
..+..+.....++...+-..||.+ .+.+.+....+.....++.++...+..++ .+|+..+..+..+..+.++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l---~~r~g~~~~~~~~~~~~~~~~~~ 303 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRL---VKKFGRKILFAGGILLMVLGYLI 303 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHH
Confidence 333333334445544444455533 22222222334444566666666666677 77777655555565555444433
Q ss_pred HhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC
Q 016145 104 TPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG 146 (394)
Q Consensus 104 ~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~ 146 (394)
.... + ...+..++...+.|++.+..+....++.+
T Consensus 304 ~~~~-------~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (437)
T TIGR00792 304 FFFA-------G--SNLPLILVLIILAGFGQNFVTGLVWALVA 337 (437)
T ss_pred HHHc-------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 1 11233344555666776666666666644
No 97
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=94.77 E-value=3.9 Score=42.24 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=73.9
Q ss_pred cccchhhHHHHHhhhchhHHHHhhcch-HhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcc----cCcceehh
Q 016145 17 TYKVAYIIHFLLGAGNLLPWNAFITAV-DYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSK----LSYRLRMN 91 (394)
Q Consensus 17 ~~~~~y~~f~l~G~~~llpwN~~ita~-~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ri~ 91 (394)
+++++.+++..+|+ -+.|....+-. .|.++ +.- .............+...+..+..|...+| +..|....
T Consensus 3 ~~~li~~~~~~~Gi--q~~~~l~~~~l~~yl~~-lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i 77 (477)
T TIGR01301 3 LRKLLRVASVAAGV--QFGWALQLSLLTPYVQE-LGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI 77 (477)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-cCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH
Confidence 35577788888887 44577666533 45433 221 12344455555556666666666555553 33332222
Q ss_pred H-HHHHHHHHHHHHhhhhccc---cc----CCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH--H---HHH-H
Q 016145 92 L-GFSMFALSLLVTPIIDWAR---NY----SGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ--Y---MQA-V 156 (394)
Q Consensus 92 ~-~~~~~~~~~~~~~~~~~~~---~~----~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~--~---~~a-~ 156 (394)
. +....++++++++...... .+ .+.....+..++...+..++....|+..-++.+ ..|++ . -.+ .
T Consensus 78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~ 157 (477)
T TIGR01301 78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF 157 (477)
T ss_pred HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence 2 3344444444444322110 00 000111233444555566788888888877776 45643 2 122 2
Q ss_pred HhcccchhhHHHHHH
Q 016145 157 FAGTASSGVLVSILR 171 (394)
Q Consensus 157 ~~G~g~sGv~~s~l~ 171 (394)
....+++++++.++-
T Consensus 158 ~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 158 SFFMAIGNVLGYAAG 172 (477)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555554443
No 98
>PRK11462 putative transporter; Provisional
Probab=94.55 E-value=6.3 Score=40.27 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=61.4
Q ss_pred hHHHHHhhhchhHHHHhhcchHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcc---ee--hhHHHHHH
Q 016145 23 IIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYR---LR--MNLGFSMF 97 (394)
Q Consensus 23 ~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~r--i~~~~~~~ 97 (394)
+.+-+-.++....|+.+-+=..||-....+-++ ........++-+.-.+..+..|...+|.+.| .| +..+-+..
T Consensus 12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~ 90 (460)
T PRK11462 12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF 90 (460)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH
Confidence 444444445566676666533333221112111 2233344444444444455555555554332 12 33332232
Q ss_pred HHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCH------HHHHHHHhcccchhhHHHHHH
Q 016145 98 ALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPK------QYMQAVFAGTASSGVLVSILR 171 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~------~~~~a~~~G~g~sGv~~s~l~ 171 (394)
.+++.++-... +.++...+....+.-.+...+-+..+-...++.+.+-+ +....-+.|..+++.+++++-
T Consensus 91 ~i~~~llf~~p----~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 91 GIVCVLAYSTP----DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHhCC----CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211000 11222222223333334466666666666666665543 233444555555555555543
No 99
>PRK09669 putative symporter YagG; Provisional
Probab=94.41 E-value=0.44 Score=48.23 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=37.7
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
+.....++.++...+..++ .+|+..+.....+.+...+........ + ....+..++..++.|++.+..+
T Consensus 269 ~~~~~~i~~ii~~~~~~~l---~~r~gk~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~i~g~~~~~~~ 337 (444)
T PRK09669 269 FLVTGMIAGLFGALLSERL---LGKFDRVRAFKWTIVAFVILSALIFFI-------P-PSNVWLIFALNILFNFIQNLTT 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHHHh-------C-cchHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555556 666655444444443333222211111 1 1124444555566777777776
Q ss_pred hhhhhhcC
Q 016145 139 GSLIGSAG 146 (394)
Q Consensus 139 ~s~~~la~ 146 (394)
....++.+
T Consensus 338 ~~~~am~a 345 (444)
T PRK09669 338 PLQWSMFS 345 (444)
T ss_pred HHHHHHHH
Confidence 66666665
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=94.26 E-value=7.7 Score=40.14 Aligned_cols=58 Identities=5% Similarity=-0.048 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 331 KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 331 ~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
-|.++.....+++|+..+.++...+-...+..+++.|..+..+..++...|-..|+.+
T Consensus 380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888899999998888777766666666777777666655555555555444
No 101
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=94.25 E-value=6.7 Score=39.39 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=50.9
Q ss_pred HHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-C
Q 016145 69 LVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-K 147 (394)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~ 147 (394)
+++++.-.+ .+|+..|.-+..+..++.+..+......... ..........+++=++.|++.+........+.+ .
T Consensus 78 ig~~~~G~l---~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 78 IGGWLFGRI---ADKHGRKKSMLISVCMMCFGSLVIACLPGYE--TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 334444445 7777666656666666665555544322100 000111233445556778777766666666655 4
Q ss_pred CCHH----HHHHHHhcccchhhHHHHHHHH
Q 016145 148 LPKQ----YMQAVFAGTASSGVLVSILRII 173 (394)
Q Consensus 148 fp~~----~~~a~~~G~g~sGv~~s~l~ii 173 (394)
+|++ .......|+..+.+++.++..+
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5643 3444445555554555444333
No 102
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.15 E-value=0.35 Score=49.51 Aligned_cols=120 Identities=12% Similarity=-0.054 Sum_probs=54.6
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhccc-CCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYLY-PAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFA 98 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~ 98 (394)
..+..++...+......+...+...||-+.. .+++....+.....++.++...+..++ .+|+..+.....+..+.+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l---~~r~gkk~~~~~~~~~~~ 307 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRL---VKSLSRRILWAGASIFPV 307 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCcHHHHHHHHHHHH
Confidence 3334444333333344454444444553332 222222223333345555666666666 777776655555555444
Q ss_pred HHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCC
Q 016145 99 LSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGK 147 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~ 147 (394)
+..+........ + ....+..++...+.|++.+.......++.+-
T Consensus 308 ~~~~~~~~~~~~----~-~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad 351 (473)
T PRK10429 308 LSCGVLLLMGLA----A-PHNALLIVIAGILLNIGTALFWVLQVIMVAD 351 (473)
T ss_pred HHHHHHHHHhcc----C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333332221110 1 1123344445555666666666555554443
No 103
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=93.76 E-value=1.2 Score=45.79 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=63.8
Q ss_pred cchHhhhcc--cCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCc-ceehhHHHHHHHHH-HHHHhhhhcccccCCC
Q 016145 41 TAVDYFGYL--YPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSY-RLRMNLGFSMFALS-LLVTPIIDWARNYSGS 116 (394)
Q Consensus 41 ta~~yf~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ri~~~~~~~~~~-~~~~~~~~~~~~~~~~ 116 (394)
++-+|.++. =.+.++-.+..-++.+...+..++.-.+ .+|... +.=.+.|+.+.+++ ++-..+ +. .+
T Consensus 56 s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~W---s~k~~~~k~Pli~s~ii~~~g~llY~~l-~~----~~- 126 (488)
T KOG2325|consen 56 SMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIW---SNKTGSVKKPLIVSFLIAIIGNLLYLAL-AY----VP- 126 (488)
T ss_pred ecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccc---ccccCCcccCHHHHHHHHHHHHHHHHHH-Hh----cc-
Confidence 455776542 1122233333334555555555444444 666443 32255555555443 333232 22 12
Q ss_pred cchhhhhhHHHHhhccchh-hhchhhhhhcCCCCHH---HHHHHHhcccchhhHHHHHHHHHHHhC
Q 016145 117 NGAYGVTVASVVTCGLADG-LVGGSLIGSAGKLPKQ---YMQAVFAGTASSGVLVSILRIITKASL 178 (394)
Q Consensus 117 ~~~f~~~li~~~~~g~~~~-~~q~s~~~la~~fp~~---~~~a~~~G~g~sGv~~s~l~ii~~~~~ 178 (394)
+..-+..|++=++.|++.+ ..--=.|.-++..+++ -..+..-|+.++=+++..++.+.....
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg 192 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLG 192 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhc
Confidence 2256777888778887632 2222223334444543 344444555566677888887665543
No 104
>PRK15075 citrate-proton symporter; Provisional
Probab=93.74 E-value=8.4 Score=38.72 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhh-hcCCCC
Q 016145 71 LVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIG-SAGKLP 149 (394)
Q Consensus 71 ~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~-la~~fp 149 (394)
+++.-.+ .+|+..|.-+..+..+..++.+......... ..+ .......++.-++.|++.+..-..... .+..+|
T Consensus 73 ~~~~G~l---~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 73 AIVLGAY---IDRVGRRKGLIVTLSIMASGTLLIAFVPGYA-TIG-LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred HHHHHHH---hhhhchHHHHHHHHHHHHHHHHHHHhCCcHH-HHH-HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 3444455 7787777777777776666555554322100 000 000112344455667666654433323 444566
Q ss_pred HH----HHHHHHhcccchhhHHHHHHH
Q 016145 150 KQ----YMQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 150 ~~----~~~a~~~G~g~sGv~~s~l~i 172 (394)
++ .++-...++.++..++..+-.
T Consensus 148 ~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 148 PGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 333333444444444444333
No 105
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.56 E-value=2.4 Score=43.77 Aligned_cols=119 Identities=16% Similarity=0.002 Sum_probs=65.1
Q ss_pred chHhhhccc--CCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcch
Q 016145 42 AVDYFGYLY--PAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGA 119 (394)
Q Consensus 42 a~~yf~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (394)
+.+|+.+.+ .+++..+.+.-+...+..+.++..-.+ .+|+.+|.-+..+.+...+..++.+... .
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlL---aDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------S 114 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLL---TDYLRYKPVLVLQALSFVCVWLLLLLGT----------S 114 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 445665433 222212222223444444444444455 5565666656666656555555554321 2
Q ss_pred hhhhhHHHHhhccchhhhchhhhhhcCCCCHHH----HHHHHhcccchhhHHHHHHHH
Q 016145 120 YGVTVASVVTCGLADGLVGGSLIGSAGKLPKQY----MQAVFAGTASSGVLVSILRII 173 (394)
Q Consensus 120 f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~----~~a~~~G~g~sGv~~s~l~ii 173 (394)
+....++=++.|++.|..-+..--+...+|++. ++-+.+|+.+++++++++.-.
T Consensus 115 l~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677788877766644455566789643 455666777777766655554
No 106
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.09 E-value=12 Score=38.61 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 332 TEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 332 ~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.++.....++.|+..+..+...+-.+-+..+++.+..+..+..+....|-.+|+.++
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888899999999998888777777888888988888888888888888776
No 107
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=92.76 E-value=9.3 Score=40.91 Aligned_cols=128 Identities=11% Similarity=0.150 Sum_probs=75.8
Q ss_pred chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccc--------
Q 016145 42 AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARN-------- 112 (394)
Q Consensus 42 a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~-------- 112 (394)
+.+-++.+|.-++ -...+...|.+++.+..+...++ ..|.+.+.-+..+.+++.+..++.++-+....
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~---~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~ 131 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYF---GTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTV 131 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHh---hcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccc
Confidence 4455566664222 23456668889998888888888 77766555566677676666555543221000
Q ss_pred ----------------c---------------CCC--cchhhhhhHHHHhhccchhhhchhhhhhcCC-CCH----HHHH
Q 016145 113 ----------------Y---------------SGS--NGAYGVTVASVVTCGLADGLVGGSLIGSAGK-LPK----QYMQ 154 (394)
Q Consensus 113 ----------------~---------------~~~--~~~f~~~li~~~~~g~~~~~~q~s~~~la~~-fp~----~~~~ 154 (394)
. ..+ ...+...++.-++.|++.+........+... +|+ ++.+
T Consensus 132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~ 211 (633)
T TIGR00805 132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG 211 (633)
T ss_pred cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence 0 000 1134555667788888888777776666653 453 4566
Q ss_pred HHHhcccchhhHHHHHHH
Q 016145 155 AVFAGTASSGVLVSILRI 172 (394)
Q Consensus 155 a~~~G~g~sGv~~s~l~i 172 (394)
.+..+..++..++.++--
T Consensus 212 i~~~~~~iG~~lG~llgg 229 (633)
T TIGR00805 212 ILESIAVFGPAFGYLLGS 229 (633)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 666666666666655443
No 108
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=92.42 E-value=0.61 Score=44.32 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=71.2
Q ss_pred hHHHHHHHHhhHHhhhhhhhccccc-ccchh-HHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhe
Q 016145 276 YPVLLITVYNVSDFVGKSLTAVYVP-KSIKK-AAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSV 353 (394)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~-l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~ 353 (394)
........+.+++.+++........ .++|+ +.+..+...+...+..+. ++.+..++..++.|+..|.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~ 107 (352)
T cd06174 35 QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPA 107 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcccccccHh
Confidence 3344567777888887776554322 12333 344444444333222221 23355667788889988888777
Q ss_pred eeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 354 IMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 354 ~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
...+.++..++|||..+..+.......|..+|..++-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred HHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777887788899999999888888888888776543
No 109
>PRK09848 glucuronide transporter; Provisional
Probab=92.14 E-value=14 Score=37.15 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchh-------hhHHHHHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAE-------GEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~e-------re~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++.+++.|+..|..........++.++++| +.....+.++...+|-.+|..+.
T Consensus 322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777666666555544445444333 24556677787778888776654
No 110
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=91.47 E-value=11 Score=37.93 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=37.2
Q ss_pred HHHHhhccccchheeeeecCCCCCchhhhHHHHH-HHHHHHHHHHHHHHHH
Q 016145 340 TSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIV-MILSLGIGLVGGSVLG 389 (394)
Q Consensus 340 ~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~-~~~~l~~Gi~~Gs~~s 389 (394)
+.+.|+|-|.....++.|..+.++++.|..+-.+ ..+...+|..+|+.++
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4568999999999999999888877777666443 4456677777777654
No 111
>PRK10504 putative transporter; Provisional
Probab=91.04 E-value=3 Score=42.25 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHH
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALS 100 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 100 (394)
+.+..+....+..++ .+|++.+.-+..+.....+.
T Consensus 306 ~~~~~~~~~~~~~~l---~~r~g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 306 MVLGSMGMKRIVVQV---VNRFGYRRVLVATTLGLALV 340 (471)
T ss_pred HHHHHHHHHHHHHHH---HHHcCchHHHHHHHHHHHHH
Confidence 334444444445555 66766554444455444433
No 112
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.99 E-value=6.5 Score=38.75 Aligned_cols=98 Identities=7% Similarity=-0.027 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh
Q 016145 62 AYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~ 141 (394)
...+...+...+.-++ .+|++.+.-+..+.+...+.....+..+ ..+..+....+-|++-++...+.
T Consensus 248 ~~~~~~i~~~~~~~~l---~~r~g~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKL---FQNCSARDLLLISAIACVGRWAIIGAIE----------AFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred HHHHHHHHHHHHhHHH---HhhCCHHHHHHHHHHHHHHHHHHHHhHh----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566 7787776666666666655544443211 24555666778888888888888
Q ss_pred hhhcCCCCHHHH---HHHH--hcccchhhHHHHHHH
Q 016145 142 IGSAGKLPKQYM---QAVF--AGTASSGVLVSILRI 172 (394)
Q Consensus 142 ~~la~~fp~~~~---~a~~--~G~g~sGv~~s~l~i 172 (394)
+.+.+..|++.. |++. .+.|+++.+++++.=
T Consensus 315 ~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G 350 (382)
T TIGR00902 315 MRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAG 350 (382)
T ss_pred HHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887776553 4432 244555555554443
No 113
>PRK03699 putative transporter; Provisional
Probab=90.75 E-value=4.1 Score=40.34 Aligned_cols=44 Identities=2% Similarity=-0.029 Sum_probs=24.3
Q ss_pred chHhhhcccCCC-CccchhhhHhHHHHHHHHHHHHHhccCCcccCcce
Q 016145 42 AVDYFGYLYPAK-HVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRL 88 (394)
Q Consensus 42 a~~yf~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 88 (394)
...|.++.+.-+ .....+...+.+...+..++.-.+ .+|++.+.
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l---~dr~~~~~ 272 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFI---VRFFDLQR 272 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHH---HHHhchhh
Confidence 456665554211 122333444556667777777777 77776653
No 114
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=90.32 E-value=1.6 Score=43.51 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=62.3
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....+.++-.+|+........ .++|+.++.+. +++....+++.. .++.+..++.-++.|+.+|-.........
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQTIQATDRRYVVILFA--VLLTLSCLLVSF----ANSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH--HHHHHHHHHHHH----HChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666777777666543222 23455433332 222222223322 13335566777889999988777777677
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++..++++|..+-.......+.|..+|..++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 164 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLG 164 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888887777776777776666554
No 115
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=89.76 E-value=0.75 Score=45.95 Aligned_cols=141 Identities=11% Similarity=0.006 Sum_probs=75.2
Q ss_pred hHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccc-cccchhHHHH-HHHHHHHHHH
Q 016145 242 RLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYV-PKSIKKAAWA-CTGRLVFYPL 319 (394)
Q Consensus 242 ~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~-~~~~~~l~i~-s~~R~~fipl 319 (394)
+......++..+....++|-....-.+....+....-.....+++++.+.+....... ..++|++.+. .+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~--- 89 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAG--- 89 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHH---
Confidence 4445556666666666677433211121111222333445666666655544432211 1234444333 3333222
Q ss_pred HHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 320 FAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 320 f~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++.+... ++.+..++..++.|+.+|..........++..++++|..+..+.......|..+|..++
T Consensus 90 ~~~~~~~----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 155 (400)
T PRK11646 90 FATMAIA----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG 155 (400)
T ss_pred HHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 23345566777888888766554444455666778888888888888888887776654
No 116
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=89.20 E-value=29 Score=35.62 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=48.4
Q ss_pred ccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 331 KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 331 ~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
.+.+|..+.++++++..+...........+..+++.|.....+.......|-.+|+.++-
T Consensus 379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438 (475)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999998888888777777777788988888888888888888877654
No 117
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=89.11 E-value=1.3 Score=42.44 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=69.1
Q ss_pred hHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhe
Q 016145 276 YPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSV 353 (394)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~ 353 (394)
..-....++.++..++......... .++|+.++.+ +...+..-+.......+. .+.+..++..++.|+.+|.....
T Consensus 35 ~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 35 VLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG--LNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777666543222 2345544333 333322211112221111 23355667788889988887777
Q ss_pred eeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 354 IMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 354 ~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
...+.++..+++||..+..+.......|..+|..++-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7777788788889999988888888888888776653
No 118
>PRK12382 putative transporter; Provisional
Probab=89.11 E-value=1.4 Score=43.38 Aligned_cols=148 Identities=13% Similarity=-0.005 Sum_probs=79.8
Q ss_pred hHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHH
Q 016145 242 RLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPL 319 (394)
Q Consensus 242 ~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fipl 319 (394)
+...+..++.+...-...|-+.....++...+.+..-.....+.++..+++........ ..+|+.+... +...+..-.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 44445555555544444553322111111223445556678888888887666554332 2345554433 322221111
Q ss_pred HHHHhcCCCCC-ccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 320 FAACLHGPKWL-KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 320 f~~~~~~~~~~-~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.++...+... .+.+..++.-++.|+..|..........++..+++||..+......+...|..+|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~ 168 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG 168 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 22222212111 22233455667778877765555555566777788898888888888888887777665
No 119
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=89.00 E-value=2.6 Score=41.96 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 276 YPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
..-.....+.++-.+|......... ..+|+.+.... +++....+++...+. ..+.+..++..++.|+..|-.....
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA--LLFVIGAILMGLAAF-ALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH--HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHhHH
Confidence 3344566777777777776654332 23455444333 222222222322111 1122345677888899888777777
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..+..++++|..+..+...+...|..+|..++
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777888999999999988999999988877
No 120
>PRK09528 lacY galactoside permease; Reviewed
Probab=88.76 E-value=4.6 Score=40.29 Aligned_cols=77 Identities=4% Similarity=-0.038 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhh
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLI 142 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~ 142 (394)
..+...+.+...-++ .+|++.+..+..+..+..+........+ + .+.......+.|++.+.......
T Consensus 271 ~~~~~~~~~~~~g~l---~dr~g~~~~~~~~~~l~~~~~~l~~~~~--------~--~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 271 QVFLEALIMFFAPFI---INRIGAKNALLLAGTIMAVRIIGSGFAT--------G--PLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred HHHHHHHHHHHHHHH---HHHhCcchhhHHHHHHHHHHHHHHHhcc--------c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555565666 7777776555555555544444433211 1 22223334445556666555555
Q ss_pred hhcC-CCCHHH
Q 016145 143 GSAG-KLPKQY 152 (394)
Q Consensus 143 ~la~-~fp~~~ 152 (394)
.+.. .+|++.
T Consensus 338 ~~~~~~~~~~~ 348 (420)
T PRK09528 338 KYITLNFDVRL 348 (420)
T ss_pred HHHHHHcCccc
Confidence 5543 467654
No 121
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=88.60 E-value=1.3 Score=43.77 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=78.3
Q ss_pred hhHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHH-HHHHHHH
Q 016145 241 IRLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACT-GRLVFYP 318 (394)
Q Consensus 241 i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~-~R~~fip 318 (394)
+....+..++.++..-...|.+.....+....++...-....++.++..++......... ..+|++++.+. ...+...
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 334445555555554444443322111111112333445577888888887776654332 34555554443 3322211
Q ss_pred HHHHHhcCCCCC-ccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 319 LFAACLHGPKWL-KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 319 lf~~~~~~~~~~-~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
...+....+++. .+-+..++.-++.|+..|..........++..+++||..+..+.......|..+|..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 168 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG 168 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence 111111111111 12233456667888888776665555556777778888887777777777777766654
No 122
>TIGR00898 2A0119 cation transport protein.
Probab=88.37 E-value=3.9 Score=41.86 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=76.4
Q ss_pred CchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchh
Q 016145 274 DWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTS 352 (394)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t 352 (394)
++..-....+|.+|-.+|..+...... ..+|+.++.+. ++.....+++... ++.+..++.-++.|+..|-...
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~--~~~~i~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~ 199 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLST--LVTAVSGVLTAFS----PNYTVFLVFRLLVGMGIGGIWV 199 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH--HHHHHHHHHHHHc----ccHHHHHHHHHHHHhhccchHH
Confidence 455556678888888888877665433 23454443333 2221111222221 3335567788899999998888
Q ss_pred eeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 353 VIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 353 ~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
....+..|..++++|..++.+...+...|..+|..++..
T Consensus 200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999999999988999998888877654
No 123
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=88.32 E-value=8 Score=40.03 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=54.6
Q ss_pred CcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCC-CHH----HHHH
Q 016145 81 GSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKL-PKQ----YMQA 155 (394)
Q Consensus 81 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~f-p~~----~~~a 155 (394)
.+|.+...|+..|+++..++++..+...... +.+.....+.......+.|++-.......++++... |++ +++.
T Consensus 344 ~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~-~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~ 422 (500)
T PRK09584 344 GDRLPMPHKFAIGMVLCSGAFLVLPLGAKFA-NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGS 422 (500)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHH
Confidence 7788888899999999988887766543211 111222333455566778888888888888887655 543 3444
Q ss_pred HHhcccchhhHH
Q 016145 156 VFAGTASSGVLV 167 (394)
Q Consensus 156 ~~~G~g~sGv~~ 167 (394)
+..++++++.+.
T Consensus 423 ~~l~~a~g~~~~ 434 (500)
T PRK09584 423 WFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHH
Confidence 454444455444
No 124
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=87.18 E-value=2.1 Score=40.92 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHH-HHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAA-WACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~-i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
....+.++-.++......... .++|+.. +..+.+.+.. ++.... ++.+..++..++.|+.+|........+
T Consensus 37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~ 109 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS--LLLAFA-----SNFWLLLIARFLLGIGSGFFSPASNAL 109 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH--HHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH--HHhhhh-----hhHHHHhhhcccccccccccccccccc
Confidence 455666666666666544322 2344443 3344444331 111111 334567788889999998888888777
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
.++..+++||+.+..+.......|..+|..++-.
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 7787788899999999999999999888776543
No 125
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.16 E-value=40 Score=34.91 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=78.0
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLV 137 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~ 137 (394)
....++.+...++.+....+ .+|+..|.-...+..+.+++.+....... ...+-..++.=.+.|+.+++.
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~l---a~~~GRK~~l~~~~~l~~~~~~~~~~s~~-------~~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLL---ADRFGRKNALLLSNLLAVLAALLMGLSKS-------APSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhcchHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhHHH
Confidence 34456677777777777777 77666664444444444433333322211 223555566677788888877
Q ss_pred chhhhhhcCCC-CHHHHHHHHhcccchhhHHHHHHHHH--HHhCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHhhccc
Q 016145 138 GGSLIGSAGKL-PKQYMQAVFAGTASSGVLVSILRIIT--KASLPQTPQGLRTSAH-FYFIVSTIIMLCCCLGSNLLHKL 213 (394)
Q Consensus 138 q~s~~~la~~f-p~~~~~a~~~G~g~sGv~~s~l~ii~--~~~~~~~~~~~~~~~~-~yF~i~~~~~~~~~~~~~~l~r~ 213 (394)
.+..-=+.+-. |+++=++..+=+.++..++.++..+. ....+. ...+ ..+....+..++..+...+++.+
T Consensus 134 ~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt------~~~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 134 TGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT------EDLWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred HHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC------CcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 77664444444 45555665555555555555554322 122221 1223 33445555556666666777777
Q ss_pred hHH
Q 016145 214 PVM 216 (394)
Q Consensus 214 p~~ 216 (394)
|.+
T Consensus 208 Pk~ 210 (485)
T KOG0569|consen 208 PKY 210 (485)
T ss_pred cch
Confidence 754
No 126
>PTZ00207 hypothetical protein; Provisional
Probab=87.12 E-value=5.3 Score=42.36 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=46.8
Q ss_pred CcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh-hhhcCCCCHH---HHHHH
Q 016145 81 GSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL-IGSAGKLPKQ---YMQAV 156 (394)
Q Consensus 81 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~-~~la~~fp~~---~~~a~ 156 (394)
.+|++.+.-+..+.++..+..++..+.... .-...++..++.-++.|.+.+....+. ......||++ .++.+
T Consensus 85 ~Dr~G~R~vllig~ll~~iG~ll~ala~~~----~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~ 160 (591)
T PTZ00207 85 YDYLGPRPIFVLSMTVFCLGTLLFALTFQE----VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIM 160 (591)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhcc----cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHH
Confidence 667777766777777777776666553110 001235555556667777766554443 3345567754 34555
Q ss_pred HhcccchhhH
Q 016145 157 FAGTASSGVL 166 (394)
Q Consensus 157 ~~G~g~sGv~ 166 (394)
..+.|+++.+
T Consensus 161 ~~~~gLGsaI 170 (591)
T PTZ00207 161 KTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 127
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=86.79 E-value=40 Score=34.51 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 335 PVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 335 ~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.....++.++..|....-.+.+.-+.++++++...-.+.+...++|-.+|+.++
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778887766666666665655555554444444444466666655543
No 128
>PRK11462 putative transporter; Provisional
Probab=86.76 E-value=7 Score=39.92 Aligned_cols=54 Identities=17% Similarity=0.021 Sum_probs=27.6
Q ss_pred chhHHHHhhcchHhhhcccC-CCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcce
Q 016145 32 NLLPWNAFITAVDYFGYLYP-AKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRL 88 (394)
Q Consensus 32 ~llpwN~~ita~~yf~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 88 (394)
..+..+...+..-||-..+- +++....+...+.+++++...+..++ .+|+..+.
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l---~~r~gkk~ 294 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPL---TDWKCKVT 294 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHH
Confidence 33444444444555543332 22222344556667777776666677 66655443
No 129
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=86.42 E-value=4.9 Score=41.19 Aligned_cols=31 Identities=6% Similarity=0.153 Sum_probs=19.4
Q ss_pred hhHHHHhhccchhhhchhhhhhcCCCCHHHH
Q 016145 123 TVASVVTCGLADGLVGGSLIGSAGKLPKQYM 153 (394)
Q Consensus 123 ~li~~~~~g~~~~~~q~s~~~la~~fp~~~~ 153 (394)
..+...+.+++.+..++..+++...++++..
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVSRRSL 381 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccChhhc
Confidence 3344455566666667777777777776643
No 130
>TIGR00895 2A0115 benzoate transport.
Probab=85.75 E-value=2.8 Score=40.65 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.++..+|......... .++|+.+.... ++.....+++... ++.+..++..++.|+..|........+
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI--LLFSVFTLLCALA----TNVTQLLILRFLAGLGLGGLMPNLNAL 129 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHc----cchHHHHHHHHHHhcccccchhhHHHH
Confidence 3456777777777766544322 23444333322 1111111122211 223445667788888888777777777
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..++++|..+..+.......|..+|..++
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 77777778888888888888888888887665
No 131
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=85.70 E-value=3.8 Score=39.81 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=62.0
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.++..+|......... .++|+.+.... ++.....+.+... ++.+..++..++.|+..|...+.....
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~ 117 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL--FIFALSSLGLALS----NNIETLLVLRFVQAFGASAGSVISQAL 117 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHHH----ccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 4466777777777766554322 23444333222 2221111222211 233445667788888888777766666
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++..+++||..+..+.......|..+|..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 149 (385)
T TIGR00710 118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLG 149 (385)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67767778888888888777777777776654
No 132
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=85.45 E-value=3.4 Score=39.96 Aligned_cols=105 Identities=12% Similarity=-0.030 Sum_probs=55.7
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.+++.++.....+... ..+|+...... ++.....+++...++ +.+..++..++.|+.+|... ....+
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~-~~~~~ 114 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAIPCLWAGLAVQ---SYSVLLLLRLFIGIAGGSFA-SCMPW 114 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhchhhH-hHHHH
Confidence 3456777777777766554332 23344333322 222211122222110 33445667777888876543 23444
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..+++||..+..+.......|..+|..++
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45556678888887777766666666555543
No 133
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=85.36 E-value=7.1 Score=39.92 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=81.8
Q ss_pred cchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchh
Q 016145 56 EKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADG 135 (394)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~ 135 (394)
.-.++.+.++...++.=+.-++ ++|.+.+.-+.+|.++..++++....+. .||..+++-.+.|++-|
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyL---adryNR~~v~~vG~~iW~~Av~~~~fs~----------~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYL---ADRYNRKRVIAVGIFIWTLAVFASGFSN----------HFWQVLLCRGFVGIGEA 136 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHH---HhhcCcceEEeeHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhccchh
Confidence 3445555555555555555566 8888888888899988887777766542 38888888888888766
Q ss_pred hhchhhhhhcC-CCCHHHH--------HHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 016145 136 LVGGSLIGSAG-KLPKQYM--------QAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLG 206 (394)
Q Consensus 136 ~~q~s~~~la~-~fp~~~~--------~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~ 206 (394)
...+..=++.+ .||.+-= =+.-.|.|++++.++.+.-.+- .=|.+ |..+.++.+++.++
T Consensus 137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--------~Wr~a----f~~~avl~vi~~~L 204 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--------WWRWA----FRGSAVLGVIVGLL 204 (493)
T ss_pred hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--------ceEEE----EEeehHHHHHHHHH
Confidence 66655544444 4554221 1233566666666554321110 11122 24555566666666
Q ss_pred HHhhccchHHH
Q 016145 207 SNLLHKLPVMQ 217 (394)
Q Consensus 207 ~~~l~r~p~~~ 217 (394)
-+.+.|.|..+
T Consensus 205 ~~~f~~eP~rg 215 (493)
T KOG1330|consen 205 VFLFVREPERG 215 (493)
T ss_pred HHhhccCcccc
Confidence 66666767544
No 134
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=85.35 E-value=13 Score=36.69 Aligned_cols=82 Identities=17% Similarity=0.072 Sum_probs=40.4
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLV 137 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~ 137 (394)
.....+.+...+..++.-++ .+|...+..+..+++...+.+...... + ..+...+..++.|++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l---~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~g~~~~~~ 325 (406)
T PRK11551 259 LVQIAFNIGGALGSLLIGAL---MDRLRPRRVVLLIYAGILASLAALAAA-------P---SFAGMLLAGFAAGLFVVGG 325 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhc-------C---cHHHHHHHHHHHHHHHHhH
Confidence 34445566666777766666 666655433333333333333322211 1 1222233445556655555
Q ss_pred chhhhhhcC-CCCHHH
Q 016145 138 GGSLIGSAG-KLPKQY 152 (394)
Q Consensus 138 q~s~~~la~-~fp~~~ 152 (394)
++...++.. .+|++.
T Consensus 326 ~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 326 QSVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHHHHcchhh
Confidence 666665544 456654
No 135
>PRK10489 enterobactin exporter EntS; Provisional
Probab=85.08 E-value=14 Score=36.62 Aligned_cols=80 Identities=11% Similarity=-0.055 Sum_probs=40.6
Q ss_pred hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhch
Q 016145 60 SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGG 139 (394)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~ 139 (394)
...+.+..++..++..+. .+|.+.+..+..+.+...+.++.... .+ ..+...++..+.|++.+..+.
T Consensus 265 ~~~~~~g~~ig~~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~g~~~~~~~~ 331 (417)
T PRK10489 265 YAAVPLGAALGALTSGWL---AHSARPGLLMLLSTLGSFLAVGLFGL--------MP--MWILAVLCLALFGYLSAISSL 331 (417)
T ss_pred HHHHHHHHHHHHHHHHHh---hhccCcchHHHHHHHHHHHHHHHHHc--------cc--hHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666566 55533322233444444333333221 11 133444556667777777666
Q ss_pred hhhhhc-CCCCHHH
Q 016145 140 SLIGSA-GKLPKQY 152 (394)
Q Consensus 140 s~~~la-~~fp~~~ 152 (394)
...++. ...|+++
T Consensus 332 ~~~~~~~~~~p~~~ 345 (417)
T PRK10489 332 LQYTLLQTQTPDEM 345 (417)
T ss_pred HHHHHHHhhCCHHH
Confidence 666664 4567765
No 136
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=85.04 E-value=14 Score=37.18 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=55.6
Q ss_pred hHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchh
Q 016145 61 VAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGS 140 (394)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s 140 (394)
...++...+.+....++ .+|++.+.-+..+.+...+........+ +....++...+..++.|++.+.....
T Consensus 258 ~~~~i~~i~~~~~~g~l---~dr~g~r~~l~~~~~~~~v~~~l~~~~~------~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFF---LKRFGIKKVMLLSLVAWALRFGFFAYGD------PEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHHHHHcC------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666 7777766556666655555443333211 11112344445566677777777666
Q ss_pred hhhh-cCCCCHHHH---HHHH--hcccchhhHHHHHHH
Q 016145 141 LIGS-AGKLPKQYM---QAVF--AGTASSGVLVSILRI 172 (394)
Q Consensus 141 ~~~l-a~~fp~~~~---~a~~--~G~g~sGv~~s~l~i 172 (394)
...+ +..+|++.. +++. ..+++++.+++.+.-
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G 366 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG 366 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555 446786532 2223 345666666655553
No 137
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.68 E-value=2.3 Score=34.21 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=43.4
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+...+..++.|+..|........+.++..++++|..+..........|..+|..++
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 107 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhH
Confidence 44567788899999888777777777777788888888888877777777776554
No 138
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=84.57 E-value=4.7 Score=41.66 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=83.2
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcch-hhhhhHHHHhhccchh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGA-YGVTVASVVTCGLADG 135 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~li~~~~~g~~~~ 135 (394)
.+.+......+++..++.+++ .+|.+.|.....++.++.+..+++.+........++... ..+..++..+.+.+.|
T Consensus 308 ~~an~~~g~v~~~~t~~~~~l---id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G 384 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLVSPFL---IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG 384 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC
Confidence 456677778888888888888 999998888888888877665555443222111111111 2234445555666677
Q ss_pred hhchhhhhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 016145 136 LVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLH 211 (394)
Q Consensus 136 ~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~ 211 (394)
..--..+=-+-++|++.-.+. +++++..-.+.++++...++.-. -..+.+.|+...+...+..+..|++++
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa---~s~~~~~~w~~~fiv~~~fp~l~--~~~g~~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAA---QSVATAVNWLSNFIVGFAFPPLQ--NVIGPYVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred CCchhHHHHHHhCCccchHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHhcchhhHHHHHHHHHHHHHHHHhCc
Confidence 666666777778887654322 34555566666665554443211 112333333333333344444555554
No 139
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=84.48 E-value=16 Score=35.41 Aligned_cols=34 Identities=3% Similarity=0.050 Sum_probs=18.8
Q ss_pred hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHH
Q 016145 60 SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSM 96 (394)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~ 96 (394)
.....+...+...+..++ .+|++.+..+..+...
T Consensus 236 ~~~~~~~~~~~~~~~g~l---~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 236 FALNIVFLFVMTIINSRF---VRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHH
Confidence 334555555666666666 7776655444445443
No 140
>TIGR00893 2A0114 d-galactonate transporter.
Probab=84.44 E-value=3.1 Score=40.02 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=66.7
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHH-HHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAA-WACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~-i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
.....+.++..++.....+... .++|+.+ +..+...+... .+... ++-+..++..++.|+..|........
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~ 105 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG---LQAFA----GAYVSLYILRVLLGAAEAPFFPGIIL 105 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHH---HHHHH----cCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4566777777777776554322 2234332 22222222211 11111 13355677788889998888777777
Q ss_pred ecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
+.++..+++||..+..+.......|..+|..++-
T Consensus 106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 7788788889999988888888888888876654
No 141
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=84.38 E-value=3.8 Score=42.23 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=73.3
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHHHHHHhcCCC--CCccchhHHHHHHHHhhccccchhee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPLFAACLHGPK--WLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fiplf~~~~~~~~--~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
.....+++|-.+|.....+... ..+|+.+... +.-.+.. +++...+. ...+.+..++.-++.|+..|-.....
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 136 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIAT---VASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLS 136 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4577788888888887765443 2345443332 2122211 12221111 11112456788889999999888888
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
..+..|..++++|..+..++..+...|...|..++.
T Consensus 137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999988887764
No 142
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=83.18 E-value=54 Score=33.02 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHHhhHHhhhhhhhccccccc--chhH-HHHHHH-HHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhe
Q 016145 278 VLLITVYNVSDFVGKSLTAVYVPKS--IKKA-AWACTG-RLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSV 353 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~~~~--~~~l-~i~s~~-R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~ 353 (394)
+-+...+..|-++|-....+...++ +++. .+.+.. =..|. +.+++ .+..+.+..-.-++++|+.||.+++-
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~-lii~a----~~~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA-LIILA----GPLGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHH----HhcccchHHHHHHHHHHHhhhHHHHH
Confidence 4567888999999988877644332 2221 122221 12222 11122 22355667778899999999998776
Q ss_pred eeeecCCCCCchhh----hHHHHHHHHHHHHHHHHHHHH
Q 016145 354 IMILAPKTVPVAEG----EIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 354 ~mi~~p~~v~~~er----e~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
+.-..-+-.++++. ..-|..=..+-.+|..+|..+
T Consensus 322 als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 322 ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53222111112211 233444445556666666543
No 143
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=45 Score=34.30 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=32.8
Q ss_pred hhhhHHHHhhccchhhhchhhhhhcCCCCH----HHHHHHHhcccchhhHHHHHHH
Q 016145 121 GVTVASVVTCGLADGLVGGSLIGSAGKLPK----QYMQAVFAGTASSGVLVSILRI 172 (394)
Q Consensus 121 ~~~li~~~~~g~~~~~~q~s~~~la~~fp~----~~~~a~~~G~g~sGv~~s~l~i 172 (394)
+......++.|++.|++-.+-=++....++ +-..+.+++.+-++.+.-..-+
T Consensus 103 y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 103 YYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 455678888999999854444344443332 2346788888877777654444
No 144
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=82.99 E-value=6.6 Score=38.27 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=63.4
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.+++.+|.....+... ..+|+.+.... ++..-..+++... ++.+..++..++.|+..|-.......+
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSI--VLFSAGTLACGFA----PGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHh----ccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3456667777777666554332 23455444332 2222112222221 233445667788888877666666666
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
..+..+++||..+..+.......|..+|..++-
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888988888888888888877776653
No 145
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=82.89 E-value=8 Score=39.13 Aligned_cols=101 Identities=10% Similarity=-0.103 Sum_probs=46.8
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....+.++..+|......... ..+|+.++... ++.......+...+..-.+.+..++..++.|+..|..........
T Consensus 68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~ 145 (452)
T PRK11273 68 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 145 (452)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH--HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 345566666666555443222 23444443332 222221222221111111223345556677877765433222223
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGL 382 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi 382 (394)
.+..++++|..+..+.......|.
T Consensus 146 ~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 146 VHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HHhCChHHHHHHHHHHHHHHHhhh
Confidence 344456778777777666655553
No 146
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=81.77 E-value=8.9 Score=37.68 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=52.4
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
....++.+++.++......... .++|+.++... ++.....+++... ++.+..++..++.|+.+|+... ....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~-~~~~ 130 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA--LGMGIVMVLMGLA----QNIWQFLILRALLGLLGGFVPN-ANAL 130 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH--HHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHh-HHHH
Confidence 4566777777777665443222 23344433222 2222212222211 2234455666777887776433 2233
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++..+++||..+..........|..+|..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777776666666666665554443
No 147
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=81.56 E-value=11 Score=38.00 Aligned_cols=51 Identities=14% Similarity=-0.066 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGS 386 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs 386 (394)
.++..++.|+..|-..........+..+++||..+..+.......|-.+|.
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 345566777777655443333444555677888887777666665555443
No 148
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=81.12 E-value=11 Score=38.34 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=18.2
Q ss_pred hhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH
Q 016145 120 YGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY 152 (394)
Q Consensus 120 f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~ 152 (394)
++...+...+.|++.+..+....++.. ..|++.
T Consensus 333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~ 366 (455)
T TIGR00892 333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR 366 (455)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH
Confidence 344444555667666666665555544 456543
No 149
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=80.73 E-value=18 Score=34.23 Aligned_cols=217 Identities=13% Similarity=0.140 Sum_probs=94.8
Q ss_pred HHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHhhh--ccccccc
Q 016145 155 AVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKL-PVMQQHYRLLI--DDALSSR 231 (394)
Q Consensus 155 a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~-p~~~~~~~~~~--~~~~~~~ 231 (394)
.=..|=.++++++.+.-++..-. .+..++.-..-+.+..++..+-++.|..+.+. +..+.. ++++ +.+.+++
T Consensus 10 ~n~~gf~iG~ii~~ipF~~~~~~----~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~~~~~~~~ 84 (267)
T PF07672_consen 10 FNPWGFNIGTIIVNIPFLISSSV----VIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKENSTLSKK 84 (267)
T ss_pred eccccchhhHHHHHhhHHhcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccccccccccccc
Confidence 33445566666666654443111 12223332233444555555566667666433 222211 1111 1123445
Q ss_pred hhHHHHHHHhhHhHHHHHHHHhhhhccccceeeee-----cc--------cccCCCchHHHHHHHHhhHHhhhhhhhccc
Q 016145 232 QAIWRVGRRIRLPAFGVILIYIVTLSIFPGFIGED-----LE--------SKLLRDWYPVLLITVYNVSDFVGKSLTAVY 298 (394)
Q Consensus 232 ~~~~~v~k~i~~~~~~~fl~f~vTl~vFPgv~~~~-----~~--------~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~ 298 (394)
++.++++|+=--+...+......-.++||-..... .. +...-+|.-.+..-+|..|-++|=..-...
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~ 164 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLW 164 (267)
T ss_pred chHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccc
Confidence 67777776433223333333333455777322210 00 011123444445667777888885554332
Q ss_pred c-c-ccchhHHHHHH--HHHHHHHHHHHHhc--CCCCCccchhHHHHHHHHhhccccch---heeeeecCCCCCchhhhH
Q 016145 299 V-P-KSIKKAAWACT--GRLVFYPLFAACLH--GPKWLKTEVPVLVLTSMLGFTNGYLT---SVIMILAPKTVPVAEGEI 369 (394)
Q Consensus 299 ~-~-~~~~~l~i~s~--~R~~fiplf~~~~~--~~~~~~~d~~~~il~~l~gltnGy~~---t~~mi~~p~~v~~~ere~ 369 (394)
. . .+||+. +..+ +-.++..+-.+|.+ ++ +++. -.-.+.++|+-.|.+. --.+.+-|..-++.+.+.
T Consensus 165 nkt~~kRk~f-i~~~~~~gi~~~~l~~~~~~~~g~---~~~~-~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~ 239 (267)
T PF07672_consen 165 NKTNYKRKPF-IHFIISLGIVFFVLSIVVVYFVGP---GNAA-GFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKK 239 (267)
T ss_pred hhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhCc---chHH-HHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcce
Confidence 2 2 123332 2222 22444444445543 22 2221 1223555555555443 222344566555555566
Q ss_pred HHHHHHHHHHHH
Q 016145 370 AAIVMILSLGIG 381 (394)
Q Consensus 370 ag~~~~~~l~~G 381 (394)
+|.+-++.=.+|
T Consensus 240 ig~~Fg~iWGfG 251 (267)
T PF07672_consen 240 IGIQFGLIWGFG 251 (267)
T ss_pred ehhHHHHHHHHH
Confidence 665555444444
No 150
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=80.65 E-value=21 Score=35.98 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=26.9
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHh
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTP 105 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 105 (394)
......+.+.+..++..++ .+|++.+.-...+..+..++...+.
T Consensus 311 ~~~~~~~~~~i~~~~~g~l---~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMT---VDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcChHHHHHhHHHHHHHHHHHH
Confidence 3344555666666666666 7777666556666666666555544
No 151
>PRK03633 putative MFS family transporter protein; Provisional
Probab=80.43 E-value=5.3 Score=39.28 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhHHhhhhhhhcccccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 276 YPVLLITVYNVSDFVGKSLTAVYVPK-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~~~~~~~~~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
..-.....+.++..+|.....+...+ .+|+.+.... ++.......+... ++.+...+..++.|+..|-.....
T Consensus 42 ~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~ 115 (381)
T PRK03633 42 QVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS--LIFAAGCAGLGLM----VGFWSWLAWRFVAGIGCAMIWVVV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888887775543322 2344333322 2333223333321 233445566777788876544332
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.....+..++++|..+..........|-.+|..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 116 ESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222334556777777777777777777776654
No 152
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=80.26 E-value=41 Score=34.14 Aligned_cols=53 Identities=8% Similarity=-0.198 Sum_probs=25.2
Q ss_pred chhHHHHhhc-chHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcc
Q 016145 32 NLLPWNAFIT-AVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYR 87 (394)
Q Consensus 32 ~llpwN~~it-a~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 87 (394)
...+++.+.+ ...|+++.+.-+. -.........+...+..++.-++ .+|+..+
T Consensus 270 ~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~l---sDr~g~r 324 (467)
T PRK09556 270 LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWL---SDLANGR 324 (467)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCC
Confidence 3344444443 3457765542211 11233344555556666665555 6665444
No 153
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=80.00 E-value=14 Score=37.16 Aligned_cols=138 Identities=13% Similarity=0.132 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcch-hhhhhHHHHhhccchhhhchhh
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGA-YGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~li~~~~~g~~~~~~q~s~ 141 (394)
..++.+.......++ .+|++.+.-+..+.+..++=..+.+... ++... ..+.+....+=|+.-+....+.
T Consensus 252 ~~~aEi~~f~~~~~~---~~r~g~~~ll~~a~~~~~vR~~l~a~~~------~~~~~~~~~~~l~q~lhG~tf~~~~~a~ 322 (400)
T PF03825_consen 252 GVVAEIPFFFFSGRF---LKRFGIKWLLLLALVAYAVRWLLYAYFS------DPWPFIVALQLLGQLLHGLTFGLFHAAS 322 (400)
T ss_pred HHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445555666666677 7887776555555555444333333210 11111 1222222345677777777666
Q ss_pred hhhcC-CCCHHH---HHHHHh--cccchhhHHHHHHHH-HHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 016145 142 IGSAG-KLPKQY---MQAVFA--GTASSGVLVSILRII-TKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKL 213 (394)
Q Consensus 142 ~~la~-~fp~~~---~~a~~~--G~g~sGv~~s~l~ii-~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~ 213 (394)
..+.. ..|++. .|++.. ..|+++.+++++.=. -+.... ++ ......++.+.+++.++..+.+..+-|.
T Consensus 323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~---~~-~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA---RG-MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc---hh-hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 66665 467654 466554 457777777665542 222211 11 1223345666666666666666655443
No 154
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=79.91 E-value=37 Score=35.01 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=44.7
Q ss_pred CcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhc
Q 016145 85 SYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAG 159 (394)
Q Consensus 85 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G 159 (394)
+...|+..|+++..++++...+......+.+.....+.....-.+.|++-+......++.+. .-|+++ ++.++.-
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34447888888877666544321111111122233444445566678888888777766665 456655 3344433
Q ss_pred ccchhhHHH
Q 016145 160 TASSGVLVS 168 (394)
Q Consensus 160 ~g~sGv~~s 168 (394)
+++++.++.
T Consensus 424 ~~ig~~lg~ 432 (489)
T PRK10207 424 QAAAFLLGG 432 (489)
T ss_pred HHHHHHHHH
Confidence 344444443
No 155
>PRK10091 MFS transport protein AraJ; Provisional
Probab=79.81 E-value=7.4 Score=38.28 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=55.4
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....++++-.+|+....+... .++|+...... ++.....+++... ++.+...+..++.|+..|-........
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~ 115 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLV--ALCVIGNAMFTLS----SSYLMLAIGRLVSGFPHGAFFGVGAIV 115 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH--HHHHHHHHHHHHh----CcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3466777788888777654332 23444433332 2222222233321 233556677788888877655444444
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSV 387 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~ 387 (394)
..+..++++|..+..........|..+|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 445555666766666555555555555443
No 156
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=79.76 E-value=16 Score=28.99 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhh
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLI 142 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~ 142 (394)
+.+...+.....-+. .+|.+.+..+..+.....+..+..... ..++..++...+.|++.+..+....
T Consensus 7 ~~~~~~~~~~~~g~~---~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~ 73 (141)
T TIGR00880 7 YALGQLIYSPLSGLL---TDRFGRKPVLLVGLFIFVLSTAMFALS----------SNITVLIIARFLQGFGAAFALVAGA 73 (141)
T ss_pred ehhHHHHHHhhHHHH---HhhcchhHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555555555566 666665554544544444443333221 1244555566777777777766665
Q ss_pred hhcC-CCCHHH----HHHHHhcccchhhHHH
Q 016145 143 GSAG-KLPKQY----MQAVFAGTASSGVLVS 168 (394)
Q Consensus 143 ~la~-~fp~~~----~~a~~~G~g~sGv~~s 168 (394)
.+.. .+|++. .+....++.+++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 104 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGP 104 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhH
Confidence 5543 456543 3333444444444443
No 157
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=79.26 E-value=39 Score=34.09 Aligned_cols=197 Identities=12% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCC-------cccchhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCccc-hhhhHhHHHHHHHHH
Q 016145 1 MEAAKSAGDQPVEPRD-------TYKVAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHVEK-VFSVAYMTSSLLVLV 72 (394)
Q Consensus 1 ~~~~~~~~~~~~~p~d-------~~~~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~~~-~~~~~~~~~~~~~~l 72 (394)
|+|+++...+..+.++ +.+.++...++-....=---=.-..-..|++++|...+.+. .++...-.+..+..-
T Consensus 193 ~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp 272 (417)
T COG2223 193 MNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARP 272 (417)
T ss_pred hCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHH
Q 016145 73 LVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQY 152 (394)
Q Consensus 73 ~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~ 152 (394)
+-=++ .+|+.-+.-....++.++++..+........ .....+..........+++.++.+++.|.+....=++.
T Consensus 273 ~GG~L---sDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~ 346 (417)
T COG2223 273 LGGWL---SDRIGGRRVTLAVFVGMALAAALLSLFLTGF---GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE 346 (417)
T ss_pred ccchh---hhhccchhHHHHHHHHHHHHHHHHHcccccc---ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh
Q ss_pred H----HHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 016145 153 M----QAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGS 207 (394)
Q Consensus 153 ~----~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~ 207 (394)
+ +-+....|++|......--.++... .+....-.++..+.++..+.....|
T Consensus 347 ~G~v~G~vga~G~lGGf~lp~~~g~~~~~t----g~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 347 TGAVTGIVGAIGGLGGFFLPLAFGVSLDLT----GSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hhHHHHHHHHhccccccchhHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHHHH
No 158
>PRK10054 putative transporter; Provisional
Probab=79.15 E-value=6.2 Score=39.22 Aligned_cols=144 Identities=13% Similarity=-0.020 Sum_probs=66.7
Q ss_pred hhHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHH-HHHHHHHHHHH
Q 016145 241 IRLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAA-WACTGRLVFYP 318 (394)
Q Consensus 241 i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~-i~s~~R~~fip 318 (394)
.+...+..++..+....+.|-......+....++...-.....+.++..+++........ ..+|+.. +..+...+-..
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 444555555555555555553322111111112222223345556666665555443222 2234433 33333332222
Q ss_pred HHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 319 LFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 319 lf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
++ ... ++.+..++...+.|...+-.........++..++++|..+-.+.....++|..+|..++-.
T Consensus 89 ~~--~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 89 AI--PLV-----NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HH--HHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 1222223333344443332222233334566677788888778888888888887766543
No 159
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=78.03 E-value=38 Score=38.55 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=46.5
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLV 137 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~ 137 (394)
.+...+.+..+++.++.-++ .+|...+..+..+.++..++++.+.... ..+..++..++.|++.+..
T Consensus 273 ~~~~~~~ig~~~g~~~~g~l---~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~ 339 (1146)
T PRK08633 273 YLLAASAIGIGIGSLLAGRL---SGRHIELGLVPLGALGLALSLFLLPTAP----------SLASVLVLFFLFGFSAGLF 339 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCceEccchhHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666 6776555455555555544444433211 2445556667777777777
Q ss_pred chhhhhhcC-CCCHHHH
Q 016145 138 GGSLIGSAG-KLPKQYM 153 (394)
Q Consensus 138 q~s~~~la~-~fp~~~~ 153 (394)
......+.. ..|++..
T Consensus 340 ~~~~~~~~~~~~p~~~r 356 (1146)
T PRK08633 340 IVPLNALIQFRAPEKEL 356 (1146)
T ss_pred hHHHHHHHhhcCCccch
Confidence 666666554 4455543
No 160
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=77.96 E-value=88 Score=32.16 Aligned_cols=83 Identities=7% Similarity=0.002 Sum_probs=52.1
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
....+.+...++.++.-.+ ..++..|.-...++++.+++-+..+.. ..+...+++=++.|++.+-..
T Consensus 123 ~~s~~~~G~~vG~~i~g~l---sD~~GRk~~~~~~~~~~~i~~~~~a~a----------~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPL---SDRFGRKPVLLVSLLLFIIFGILTAFA----------PNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred HHHHHHHHHHHHHhhheeh---HhhcccHHHHHHHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHhhccchh
Confidence 3445666666666655455 667666655666766666555444432 237777788888888777777
Q ss_pred hhhhhhcC-CCCHHHHH
Q 016145 139 GSLIGSAG-KLPKQYMQ 154 (394)
Q Consensus 139 ~s~~~la~-~fp~~~~~ 154 (394)
...+++.+ .+++++-+
T Consensus 190 ~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHhHhhheeecCcchhh
Confidence 77777665 66766543
No 161
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=77.94 E-value=27 Score=34.22 Aligned_cols=42 Identities=12% Similarity=-0.114 Sum_probs=24.8
Q ss_pred hhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHH
Q 016145 60 SVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVT 104 (394)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 104 (394)
...+.+...+......++ .+|++.+.....+..+..+..+..
T Consensus 245 ~~~~~~~~i~~~~~~~~l---~~r~g~~~~~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 245 MALTAGVSMTVSFSTPFA---LGIFKPRTLMLTSQVLFLAAGITL 286 (392)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666777 778776655555555544444333
No 162
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=77.81 E-value=71 Score=31.49 Aligned_cols=63 Identities=6% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHhhc-chHhhhcccCCCC--ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHH
Q 016145 35 PWNAFIT-AVDYFGYLYPAKH--VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLL 102 (394)
Q Consensus 35 pwN~~it-a~~yf~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 102 (394)
.++.+.+ ..+|+++ + +.+ ........+.+...+...+..+. .+|.+.+..+..++.+..+...
T Consensus 220 ~~~~~~~~lp~~l~~-~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l---~~r~~~~~~~~~~~~l~~~~~~ 285 (393)
T PRK09705 220 GYASLIAWLPAFYIE-I-GASAQYSGSLLALMTLGQAAGALLMPAM---ARHQDRRKLLMLALVLQLVGFC 285 (393)
T ss_pred HHHHHHHHHHHHHHH-c-CCChhhhhHHHHHHHHHHHHHHHHHHHH---HhhccchHHHHHHHHHHHHHHH
Confidence 4444443 3456554 2 222 12334445667777888888788 8887766555555544444433
No 163
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=77.65 E-value=11 Score=35.49 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=81.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
+.+..+-++...+. +..=.+ -++.+++.-...|.+...+....+-.... +.-+...++...+...+.|.+++.
T Consensus 40 ~~l~~~~~~G~~~G-~~~G~l---~d~~gp~~~l~iG~~~~~~GY~~~~l~~~---~~i~~~~~~~~~~~~~l~~~s~~~ 112 (250)
T PF06813_consen 40 NTLSTAGDIGSYFG-ILAGLL---YDRFGPWVVLLIGAVLGFVGYGLLWLAVS---GRIPSLPVWLMCLFLFLGGNSSCW 112 (250)
T ss_pred HHHHHHHHHHhhcc-HHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHHHHh---CccCccchHHHHHHHHHHcccHHH
Confidence 44444445544433 222233 45566666666777666666555543221 111224566766777777778777
Q ss_pred hchhh-hhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccch
Q 016145 137 VGGSL-IGSAGKLPKQYMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLP 214 (394)
Q Consensus 137 ~q~s~-~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p 214 (394)
.+.+. ..-...||.+--.++..=.|.-|+-++++..+..+.+++| .+.+++| ++.....+|++.-..++..|
T Consensus 113 ~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-----~~~fll~-la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 113 FNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-----PSSFLLF-LAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCC-----hHHHHHH-HHHHHHHHHHHHhhheeccC
Confidence 66554 5566788864333444445667778888888888888653 2344433 44444455555544454444
No 164
>PRK11663 regulatory protein UhpC; Provisional
Probab=77.28 E-value=11 Score=38.05 Aligned_cols=104 Identities=12% Similarity=-0.042 Sum_probs=55.0
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.....+.++-.+++....+... .++|+....+. ++.....+++... ++.+..++.-++.|+..|-........
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL--IATGIINILFGFS----SSLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH--HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3455666776666666554322 23444433332 2222111222211 222334445556677776544444444
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
..+..+++||..+..+.......|..+|..+
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888877777777777654
No 165
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=76.67 E-value=15 Score=37.93 Aligned_cols=113 Identities=13% Similarity=0.035 Sum_probs=79.3
Q ss_pred CCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccch
Q 016145 273 RDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLT 351 (394)
Q Consensus 273 ~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~ 351 (394)
++|.......+|.+|..+|-.+-..... -.||.+++.+. ++.+..=+.+... ++-+.++++-++-|+..+-..
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~--~~~~i~~~~~a~a----~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSL--LLFIIFGILTAFA----PNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHH--HHHHHHHHHHHHh----CcHHHHHHHHHHHHhhccchh
Confidence 3566677788999999999888654332 34566555555 2222111222222 334567899999999998888
Q ss_pred heeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 352 SVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 352 t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
+....+.-|-+++++|..++.+..+....|...-...+++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~ 229 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYI 229 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999777777777776666654
No 166
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=76.62 E-value=9.4 Score=38.17 Aligned_cols=104 Identities=9% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHHHHhhHHhhhhhhhcccc-cccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYV-PKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~-~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....|.++=.+|.....+.. ...+|+...... +++....+++... ++.+..++.-++.|+.+|-.....+.+.
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIM--VLWGIASTATMFA----TGPESLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH--HHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555555555554443222 123455443333 2222222222221 2334556777888999886665555555
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+..+++||..+..+.......|..+|..++
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778898988888888888888877665
No 167
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=75.99 E-value=11 Score=37.67 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....|.+|-.+|......... ..+|+++.... +++....+.|... ++.+..++.-++.|+.+|..........
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~~~~~~~~~~~~a----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA--LIFTLACAATLFT----TSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655433221 23444443332 3443333344332 2334556677888888887666555555
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++..+++|+..+..+......+|-.+|..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666665555555555555555444
No 168
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=75.92 E-value=58 Score=33.34 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=77.6
Q ss_pred hhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCc------cchhhhHhHHHHHHHHHHHH----HhccCCcc---cCcc
Q 016145 21 AYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHV------EKVFSVAYMTSSLLVLVLVI----CWGGWGSK---LSYR 87 (394)
Q Consensus 21 ~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~----~~~~~~~~---~~~~ 87 (394)
.++.+++..+.....|+-..+....|+.+.-+.+. ...+...+.+..++.+-+.. .. .+| .+..
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l---~~~~~~~~~~ 349 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRL---GRKGKDPTTP 349 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHH---HhCCCCCCcH
Confidence 44556666666666666666655444333212221 11222222222222222211 33 332 3444
Q ss_pred eehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCC-CHH----HHHHHHhcccc
Q 016145 88 LRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKL-PKQ----YMQAVFAGTAS 162 (394)
Q Consensus 88 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~f-p~~----~~~a~~~G~g~ 162 (394)
.|+..|.++..+++....+..... +.+....++......++.+++-........++.+.. |++ +++.+..+.++
T Consensus 350 ~k~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 350 LKFTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 577889888877766655432211 111233455566677788888888888888888765 543 44555555556
Q ss_pred hhhHHHHHH
Q 016145 163 SGVLVSILR 171 (394)
Q Consensus 163 sGv~~s~l~ 171 (394)
+..++..+.
T Consensus 429 g~~l~~~~~ 437 (475)
T TIGR00924 429 GSLLGGYLA 437 (475)
T ss_pred HHHHHHHHH
Confidence 555554433
No 169
>PRK03545 putative arabinose transporter; Provisional
Probab=75.83 E-value=14 Score=36.38 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=42.1
Q ss_pred chhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 333 EVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 333 d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
-+...+.-++.|+.+|........+.++..+++||..+..+.......|..+|..++-
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 3455566678888888766665555566667788988888888888888877766653
No 170
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=75.71 E-value=23 Score=35.79 Aligned_cols=107 Identities=9% Similarity=-0.022 Sum_probs=65.8
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.+...|.++-.+|.....+... ..+|+.+....+=....++....... .+-+..++.-++.|+..|-.......+
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~~~G~~~~~~~~~~~~~ 155 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG----GGIALVVFCRVIQGLAQGSVSPATHKI 155 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHhcccchhhHHHH
Confidence 3566777777777766554322 23444333322111122211111111 112345667788899998888887778
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++..+++||..+..+......+|..+|..++
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~ 187 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS 187 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999998888888888777664
No 171
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=75.62 E-value=10 Score=37.65 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=53.3
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
.....|.++..++......... .++|+.+... +.-.+..-++....... ++.+...+.-++.|+..|-.......
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~i~G~g~~~~~~~~~~ 128 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH---ANYPLILLFYGIRGLGYPLFAYSFLV 128 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC---ccHHHHHHHHHHHHcchHHHHhHHHH
Confidence 3456777777777666554322 2345543332 22221111111101100 12223344555556655443333333
Q ss_pred ecCCCCCchhhhHHHHHHHHHHHHHH-HHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMILSLGIGL-VGGSVL 388 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~~~l~~Gi-~~Gs~~ 388 (394)
..++..+++||..+..+.......|. ..|..+
T Consensus 129 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678899999888887777776 356554
No 172
>PRK15011 sugar efflux transporter B; Provisional
Probab=74.94 E-value=81 Score=31.00 Aligned_cols=17 Identities=0% Similarity=0.061 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016145 194 IVSTIIMLCCCLGSNLL 210 (394)
Q Consensus 194 ~i~~~~~~~~~~~~~~l 210 (394)
.++.++.+++++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 374 WFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444445555555444
No 173
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=74.19 E-value=1e+02 Score=32.06 Aligned_cols=139 Identities=7% Similarity=0.045 Sum_probs=72.0
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhcccCCCCc------cchhhhHhHHHHHHHH-HHHHHhccCC--c-ccCccee
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYLYPAKHV------EKVFSVAYMTSSLLVL-VLVICWGGWG--S-KLSYRLR 89 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~~~~~~~------~~~~~~~~~~~~~~~~-l~~~~~~~~~--~-~~~~~~r 89 (394)
.+++.++++++....-|+=.-+....|.++.-|.+. .+++...+-+..++.. ++...+.... + ..+...+
T Consensus 268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K 347 (493)
T PRK15462 268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH
Confidence 466777777777777777777777777766544332 2233222222222111 1111211111 1 2344457
Q ss_pred hhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhc
Q 016145 90 MNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAG 159 (394)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G 159 (394)
+..|+.+..++++++.+-..... .+.....+-.+..-.+.+++==......+++.+..-|+..++.+.|
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~-~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg 416 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSA-MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTG 416 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHH
Confidence 88898888888766654332211 1122233333444555677777777777887776655443333333
No 174
>PRK09952 shikimate transporter; Provisional
Probab=74.14 E-value=37 Score=34.16 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=14.7
Q ss_pred HHHhhccchhhhchhhhhhc-CCCCHHH
Q 016145 126 SVVTCGLADGLVGGSLIGSA-GKLPKQY 152 (394)
Q Consensus 126 ~~~~~g~~~~~~q~s~~~la-~~fp~~~ 152 (394)
...+.+++.+...+....+. ..+|++.
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcch
Confidence 34445566555555554444 4577755
No 175
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=72.82 E-value=18 Score=34.75 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=52.6
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhc
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVG 138 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q 138 (394)
....+.....+..++..++ .+|++.+.-+..+..+.++..++... . +. ......+.+.|++.+..-
T Consensus 183 ~~s~~~~~~~iGr~~~~~l---~~r~g~~~~l~~~~~l~~~~~~l~~~--~-----~~----~~~~~~~~l~g~~~s~i~ 248 (310)
T TIGR01272 183 FTAYTWGGAMVGRFIGSAV---MPMISQGRYLAFNAFLAVLLSIGAAL--T-----HG----YVAMWFVLALGLFNSIMF 248 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHH--c-----CC----HHHHHHHHHHHHHHHHHH
Confidence 3445666666777788888 88877554444444444333322221 1 11 112334557888888888
Q ss_pred hhhhhhcCC-CCHH--HHHHHHhcccchhhHHH
Q 016145 139 GSLIGSAGK-LPKQ--YMQAVFAGTASSGVLVS 168 (394)
Q Consensus 139 ~s~~~la~~-fp~~--~~~a~~~G~g~sGv~~s 168 (394)
...++.+.. +|++ ...+++....++|.+..
T Consensus 249 P~~~s~a~~~~~~~~~~asai~~~~~~Gg~i~P 281 (310)
T TIGR01272 249 PTIFSLALNALGRHTSQGSGILCLAIVGGAIVP 281 (310)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHhcchHHH
Confidence 888888765 5543 22334333334444443
No 176
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=71.90 E-value=16 Score=37.74 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=77.8
Q ss_pred HHHhhHhHHHHHHHHhhhhccccceeeeeccccc-CCCchHHHHHHHHhhHHhhhhhhhcccccccchhHHHHHHHHHHH
Q 016145 238 GRRIRLPAFGVILIYIVTLSIFPGFIGEDLESKL-LRDWYPVLLITVYNVSDFVGKSLTAVYVPKSIKKAAWACTGRLVF 316 (394)
Q Consensus 238 ~k~i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~-~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~~~~~l~i~s~~R~~f 316 (394)
+|-+|...++-|+..+-...++|+.-+...+-++ .++-+.-+......+|-.++-..-.+..-++.+.-+.+...|++.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 4557888888888888888888876554322111 122233344677888888887765554433332234555566554
Q ss_pred HH-HHHH-Hhc-CCCCCccchhHHHHHHHHhhccccchheeeee-cCCCCCchhhhHHHHHH--HHHHHHHHHHHHHHHH
Q 016145 317 YP-LFAA-CLH-GPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL-APKTVPVAEGEIAAIVM--ILSLGIGLVGGSVLGW 390 (394)
Q Consensus 317 ip-lf~~-~~~-~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~-~p~~v~~~ere~ag~~~--~~~l~~Gi~~Gs~~s~ 390 (394)
+. =.+. |.. .|. ++-|..++-=++.|+.+|-.+.+=-.. ....++++-|..|+.-. .++..+|-.+|..++.
T Consensus 113 ~~g~llY~~l~~~~~--~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPN--GVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHhccc--chHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 32 1111 222 222 133444555566777765444332211 22233444455554444 5555555555555543
No 177
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=71.57 E-value=6.6 Score=37.69 Aligned_cols=101 Identities=10% Similarity=-0.116 Sum_probs=61.2
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMI 356 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi 356 (394)
.+...+.++..++.....+... .++|+.+... +.-.+.. +++... ++.+..++..++.|+..|........
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN---LFFGFS----TSLWVMAALWALNGIFQGMGWPPCGR 106 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH---HHHHHh----hhHHHHHHHHHHHHhhccccCCchHH
Confidence 4566778888887777654332 2344443332 2222221 112111 23345667778888888877777777
Q ss_pred ecCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 016145 357 LAPKTVPVAEGEIAAIVMILSLGIGLVGGS 386 (394)
Q Consensus 357 ~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs 386 (394)
+.++..+++||..+..+.......|..+|.
T Consensus 107 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 107 TVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred HHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 777777778888777777777777776666
No 178
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=70.51 E-value=83 Score=30.94 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhh
Q 016145 64 MTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSL 141 (394)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~ 141 (394)
.....+...+.-++ .+|.+.+..+..+.....+.+......... . ....+...+...+.|.+.+......
T Consensus 261 ~~~~~~g~~~~g~l---~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~----~-~~~~~~~~~~~~~~g~g~~~~~~~~ 330 (406)
T PRK15402 261 FGALIAGNLTLARL---TSRRPLRSLIRMGLWPMVAGLLLAALATVI----S-SHAYLWLTAGLSLYAFGIGLANAGL 330 (406)
T ss_pred HHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHHHHc----c-cccHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444555555566 666665544445554444444433322110 0 1112233445555666666555444
No 179
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=70.16 E-value=16 Score=36.90 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecC
Q 016145 281 ITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAP 359 (394)
Q Consensus 281 ~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p 359 (394)
...|.++..++.....+... .++|+.++... +++....+.|... ++....++..++.|+..|........+.+
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~ 116 (485)
T TIGR00711 43 ITSYMLANAISIPLTGWLAKRFGTRRLFLIST--FAFTLGSLLCGVA----PNLELMIIFRVIQGFGGGPLIPLSFSTLL 116 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH--HHHHHHHHHHhCc----CCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45666666666655443222 23455443333 2332223334332 23345667788889999988888877778
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 360 KTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 360 ~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+..++++|..+..+.......|..+|..++
T Consensus 117 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 117 NIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 878888999888888888888777776554
No 180
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=69.66 E-value=52 Score=32.49 Aligned_cols=23 Identities=9% Similarity=0.123 Sum_probs=14.2
Q ss_pred hhccchhhhchhhhhhcCCC-CHH
Q 016145 129 TCGLADGLVGGSLIGSAGKL-PKQ 151 (394)
Q Consensus 129 ~~g~~~~~~q~s~~~la~~f-p~~ 151 (394)
..|.+.+........+.... |.+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSAT 339 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHH
Confidence 45566666677777777754 433
No 181
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=69.20 E-value=14 Score=37.16 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=84.4
Q ss_pred HHhhHhHHHHHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHH
Q 016145 239 RRIRLPAFGVILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFY 317 (394)
Q Consensus 239 k~i~~~~~~~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fi 317 (394)
+.++...++.|..=..++..=+ +.++.-++-..+.=-.-.+...|.++-.+|--+...... .+||+++.... .+|+
T Consensus 13 ~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l--~lFi 89 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL--ALFI 89 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH--HHHH
Confidence 4566777776666555664332 332211111111112223467888888888776544332 34555544443 3333
Q ss_pred HHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 016145 318 PLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGS 386 (394)
Q Consensus 318 plf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs 386 (394)
-==++|...|+ .+..++-=++.|+++|-+-+.....+.+-++|++|..|-.++...+++...+|.
T Consensus 90 ~~n~l~alAp~----f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~Gv 154 (394)
T COG2814 90 VSNLLSALAPS----FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV 154 (394)
T ss_pred HHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhc
Confidence 22223333332 244567778999999999999999999999999999888888776666655543
No 182
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=68.99 E-value=11 Score=37.48 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 337 LVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 337 ~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+.-++.|+..|......+...|+.++++||..+..++......|..+|..++
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456779999988888888889989999999998888888877777776654
No 183
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=68.97 E-value=63 Score=32.72 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=88.5
Q ss_pred hhHHHHHhhhchhHHHHhhcc-hHhhhcccCCCCcc----chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHH
Q 016145 22 YIIHFLLGAGNLLPWNAFITA-VDYFGYLYPAKHVE----KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSM 96 (394)
Q Consensus 22 y~~f~l~G~~~llpwN~~ita-~~yf~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~ 96 (394)
.+.+.++=+|+---|+.+-.. ..||...+++.... .++...-...+.+......++ .+|+..+.-...+.++
T Consensus 222 fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~l---i~rig~k~~Lllag~i 298 (412)
T PF01306_consen 222 FWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWL---INRIGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHH---HHhcChHhHHHHHHHH
Confidence 344444433343445555543 35666666554322 223333444455555566777 8887776444444333
Q ss_pred HHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHHH-HHHHhc-ccchhhHHHHHHHH
Q 016145 97 FALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQYM-QAVFAG-TASSGVLVSILRII 173 (394)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~~-~a~~~G-~g~sGv~~s~l~ii 173 (394)
+.+=....... +.-+...+.=.+=|+--++.--+.+-+.+ .+|+|.. +.++.| |-..|+...+++.+
T Consensus 299 ~~iRi~~~~~~----------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~ 368 (412)
T PF01306_consen 299 MAIRIIGSGFA----------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPL 368 (412)
T ss_dssp HHHHHHHHHT------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33222221111 11223333344445555555555666554 6888875 567776 55566666666665
Q ss_pred HHHhCCCCCCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc
Q 016145 174 TKASLPQTPQGLRTS-AHFYFIVSTIIMLCCCLGSNLLHKL 213 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~-~~~yF~i~~~~~~~~~~~~~~l~r~ 213 (394)
.-...| +.+ .-.|+.++.+.....+++.+.++|.
T Consensus 369 ~G~lyd------~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 369 AGYLYD------RIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHhhHh------hcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 544431 222 2368888888877888888777653
No 184
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=68.95 E-value=14 Score=40.37 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=63.9
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
+...+.+|-.+|..+..+..- ..+|+.++... +++....+++... ++.+..++.-++.|+..|-.......+.
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l--il~~i~~ll~afa----~s~~~llv~R~l~G~g~g~~~p~~~~~i 280 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL--SVNGFFAFFSSFV----QGYGFFLFCRLLSGFGIGGAIPIVFSYF 280 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777654332 23444433332 2222111222211 2234566777888888877777777777
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
.+..++++|..+..++..+..+|..+|..++.
T Consensus 281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888877777888777776553
No 185
>TIGR00901 2A0125 AmpG-related permease.
Probab=68.56 E-value=26 Score=33.72 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 337 LVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 337 ~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
..+.++.++..+........+.++..+++||..+..+...+...|..+|..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 141 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALV 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333334456777888999999999999999999988887743
No 186
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=68.47 E-value=1.5e+02 Score=30.59 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=68.8
Q ss_pred hHHHHhhcchHhhhcc-cCCCCccc-hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc
Q 016145 34 LPWNAFITAVDYFGYL-YPAKHVEK-VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR 111 (394)
Q Consensus 34 lpwN~~ita~~yf~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 111 (394)
...|..-+..-||-+. ..+++... .....+....+++..+.+.+ .+|+..+.-...+.++.++.-...-..
T Consensus 250 ~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L---~~~~gkk~~~~~~~~~~~i~~~~~~f~---- 322 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRL---VKKFGKKKLFLIGLLLLAVGYLLLYFT---- 322 (467)
T ss_pred HHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhchHHHHHHHHHHHHHHHHHHHhh----
Confidence 3456666666777443 33333333 34455555555656777777 888777665666655554443333221
Q ss_pred ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHH
Q 016145 112 NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSILRIITK 175 (394)
Q Consensus 112 ~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~ 175 (394)
+....++.++..++.+++.+....-.-++.+--++ ..-+-+|.=..|+.-+......|
T Consensus 323 ----~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD--yge~~TG~R~eGi~~s~~tF~~K 380 (467)
T COG2211 323 ----PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD--YGEWKTGVRREGIVYSGMTFFRK 380 (467)
T ss_pred ----cCcchHHHHHHHHHHHHHhhccccccHHHhcchhh--HHHHHhCCCchhhHHHHHHHHHH
Confidence 12234555555566666666665555444443321 23355566666666555544444
No 187
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=68.09 E-value=1.3e+02 Score=31.02 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=56.8
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
+++...+.+.+.++.++.-.+ .+++..|.-+..+.++.++..++..... .+...+++=++.|++.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l---~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRL---GDRIGRKKTLLLAVVLFLIGAIIIALAP----------SWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhccchhh
Confidence 577788888888888887777 7777777777777777766655554321 356666777788888888
Q ss_pred hchhhhhhcCCCCHH
Q 016145 137 VGGSLIGSAGKLPKQ 151 (394)
Q Consensus 137 ~q~s~~~la~~fp~~ 151 (394)
.+...--+.+-..|+
T Consensus 159 ~~~~~piy~sEiap~ 173 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPA 173 (513)
T ss_pred hhhcchhhHhhcCCh
Confidence 776665555544443
No 188
>PRK12307 putative sialic acid transporter; Provisional
Probab=67.21 E-value=29 Score=34.33 Aligned_cols=105 Identities=11% Similarity=0.027 Sum_probs=59.5
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
....++.++-.+|.....+... ..+|+.+.... ++.......+... ++.+..++.-++.|+..|-.......+
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~ 130 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI--VAYSVGTGLSGLA----SGVIMLTLSRFIVGMGMAGEYACASTY 130 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455666666666655443222 23454443332 2222111122211 223445666778888877666665556
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..++++|..+..+...+..+|..+|..+.
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 66666778888888888877777877776543
No 189
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=66.79 E-value=1e+02 Score=30.17 Aligned_cols=77 Identities=8% Similarity=-0.129 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhh
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLI 142 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~ 142 (394)
..+..+..+.+.-++ .+|.+.+..+..+.+...+..+..... ...+..++..++.|++.++.+....
T Consensus 249 ~~~~~~~~~~~~g~l---~~r~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 249 GVVAEVLIFAFSNRL---FRRWSARDLLLLSAICGVVRWGLMGST----------TALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred HHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455 666665554555555544444333221 1244445567777888888888888
Q ss_pred hhcCCCCHHH
Q 016145 143 GSAGKLPKQY 152 (394)
Q Consensus 143 ~la~~fp~~~ 152 (394)
.+....+++.
T Consensus 316 ~~~~~~~~~~ 325 (382)
T PRK11128 316 RYIAARPGSE 325 (382)
T ss_pred HHHHHCCHhh
Confidence 8776666544
No 190
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=65.58 E-value=64 Score=30.69 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=24.3
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHH
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVT 104 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 104 (394)
+...+.+...+...+..++ .+|++.+.-+..+.....+..+..
T Consensus 245 ~~~~~~~~~~~~~~~~g~l---~dr~g~~~~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 245 AVSISSIFNGGGRPFLGAL---SDKIGRQKTMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3445566666666666677 777665544455555544444433
No 191
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=65.23 E-value=37 Score=33.26 Aligned_cols=103 Identities=7% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....+.++..++......... .++|+.+.... +......+.+... ++.+..++..++.|+..|..........
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 121 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM--SIFILGTLVALFA----HSLTVLIAASAIQGLGTGVGGVMARTLP 121 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHHH----ccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345566666655555433221 23444433322 2332222222221 2223455666777887776555444444
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVL 388 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~ 388 (394)
++..+++++..+......+...|..+|..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 122 RDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666555555443
No 192
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=62.72 E-value=54 Score=31.40 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++.-++.|+..|........+..+..++++|..+..+.......|..+|..++
T Consensus 99 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 152 (394)
T TIGR00883 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV 152 (394)
T ss_pred HHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777766666666667777788998998888888888888887654
No 193
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=62.20 E-value=1.5e+02 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=11.6
Q ss_pred HHHhhccchhhhchhhhhhcC-CCCHH
Q 016145 126 SVVTCGLADGLVGGSLIGSAG-KLPKQ 151 (394)
Q Consensus 126 ~~~~~g~~~~~~q~s~~~la~-~fp~~ 151 (394)
...+.|++.+..+........ ..|++
T Consensus 294 ~~~~~g~~~g~~~~~~~~~~~~~~~~~ 320 (375)
T TIGR00899 294 LQLLNAIFIGILAGIGMLYFQDLMPGR 320 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 334445555554444444333 34544
No 194
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=62.04 E-value=35 Score=34.92 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhccCCcccCcceehhHHH
Q 016145 63 YMTSSLLVLVLVICWGGWGSKLSYRLRMNLGF 94 (394)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~ 94 (394)
..+...+...+.-++ .+|+..+.-+..+.
T Consensus 295 ~~~~~~~~~~~~g~l---~dr~grr~~~~~~~ 323 (490)
T PRK10642 295 IMIGMLFVQPVMGLL---SDRFGRRPFVILGS 323 (490)
T ss_pred HHHHHHHHHHHHHHH---HHHhccHHHHHHHH
Confidence 344444444444455 66665544333343
No 195
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=61.89 E-value=76 Score=32.83 Aligned_cols=84 Identities=12% Similarity=0.221 Sum_probs=46.7
Q ss_pred ccchhhHHHHHhhhchh-HHHHhhc--chHhhhcccCCCC------cc---chhhhHhHHHHHHHHHHHHHhccCCcccC
Q 016145 18 YKVAYIIHFLLGAGNLL-PWNAFIT--AVDYFGYLYPAKH------VE---KVFSVAYMTSSLLVLVLVICWGGWGSKLS 85 (394)
Q Consensus 18 ~~~~y~~f~l~G~~~ll-pwN~~it--a~~yf~~~~~~~~------~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 85 (394)
.+.-+-+..+-|+|.+. .|-.+.- -..-+.+.|.+.+ +. .....+-++.++..|+..=++ ++++.
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~l---gD~~G 112 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWL---GDKFG 112 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH---Hhhhc
Confidence 34455778888888765 3332221 1222233332211 22 334455566667888887777 77777
Q ss_pred cceehhHHHHHHHHHHHHH
Q 016145 86 YRLRMNLGFSMFALSLLVT 104 (394)
Q Consensus 86 ~~~ri~~~~~~~~~~~~~~ 104 (394)
.+.-....+++++++.++.
T Consensus 113 RK~vYG~~liImIi~t~~~ 131 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALS 131 (538)
T ss_pred chhhhhHHHHHHHHHHHHh
Confidence 6655555666666666633
No 196
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=60.97 E-value=53 Score=33.80 Aligned_cols=105 Identities=13% Similarity=-0.007 Sum_probs=51.1
Q ss_pred HHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecC
Q 016145 281 ITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAP 359 (394)
Q Consensus 281 ~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p 359 (394)
..++.++=-++|........ ..+|+....+.+ +..+|.+......++..++-+..+++-++.|+..+.. ...+-...
T Consensus 76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l-l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f-~~~~~~vs 153 (462)
T PRK15034 76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA-ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANF-ASSMGNIS 153 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 33444454555655443221 234444333331 2345555433221222244445667788888874433 33444444
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 016145 360 KTVPVAEGEIAAIVMILSLGIGLVGGSV 387 (394)
Q Consensus 360 ~~v~~~ere~ag~~~~~~l~~Gi~~Gs~ 387 (394)
+--+++||..|-.+..-.-+.|..++..
T Consensus 154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 154 FFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 4455677887777765444445544433
No 197
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=60.62 E-value=1.6 Score=43.97 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 276 YPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 276 ~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
..-.....+.+|-.+|-....+... ..||+.+..+. ++.+.--+++...+.. .+.+...+.-++.|+..|-..+..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~--~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA--LLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccc--cccccccccccccccc-cccccccccccccccccccccccc
Confidence 3345678888999999888775443 34454443333 1111111111111211 244556677789999999999999
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
.++..|..+++.|.....+...+...|..+|+.++..
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 160 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI 160 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 9999998889999999999999999999988877654
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=60.10 E-value=28 Score=39.84 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=60.4
Q ss_pred chhHH-HHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHH
Q 016145 303 IKKAA-WACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIG 381 (394)
Q Consensus 303 ~~~l~-i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~G 381 (394)
+|+++ .+..++++...+..++... ++-+..++..++.|+.++..........|+..+++++..|..+......+|
T Consensus 81 rk~~~~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig 156 (1140)
T PRK06814 81 KAKLAKILKFAEIGIAALAIYGFHL----NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIA 156 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence 34432 3334455544433333331 344567788899999999888888888899889999999999999999999
Q ss_pred HHHHHHHHHh
Q 016145 382 LVGGSVLGWV 391 (394)
Q Consensus 382 i~~Gs~~s~~ 391 (394)
..+|..++=.
T Consensus 157 ~~igp~l~g~ 166 (1140)
T PRK06814 157 ILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHH
Confidence 9888777643
No 199
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=58.52 E-value=58 Score=30.37 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=13.8
Q ss_pred HHHHHHHhcccchhhHHHHHHHHH
Q 016145 151 QYMQAVFAGTASSGVLVSILRIIT 174 (394)
Q Consensus 151 ~~~~a~~~G~g~sGv~~s~l~ii~ 174 (394)
++.--+..|.-++|+++......-
T Consensus 10 ~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 10 RFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555444
No 200
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=58.30 E-value=32 Score=34.80 Aligned_cols=33 Identities=3% Similarity=-0.034 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHhhccccchheeeeecCCCCC
Q 016145 331 KTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVP 363 (394)
Q Consensus 331 ~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~ 363 (394)
++.+...++..+.|++=+.+-...|-|-.+..|
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd 342 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFD 342 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445667889999999988888888877655444
No 201
>PRK11010 ampG muropeptide transporter; Validated
Probab=58.06 E-value=1.1e+02 Score=31.37 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=18.3
Q ss_pred hccchhhhchhhhhhcCC-CCHHHHHHHHhcccchhhHHHH
Q 016145 130 CGLADGLVGGSLIGSAGK-LPKQYMQAVFAGTASSGVLVSI 169 (394)
Q Consensus 130 ~g~~~~~~q~s~~~la~~-fp~~~~~a~~~G~g~sGv~~s~ 169 (394)
.|.+.+........+... ++.+..+...+..++++.+.+.
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~ 370 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGP 370 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 4444444444445555554433
No 202
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=57.50 E-value=44 Score=35.13 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred chhhHHHHHhhhchhHHHHhhcchHhhhcc-cCC-CCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHH
Q 016145 20 VAYIIHFLLGAGNLLPWNAFITAVDYFGYL-YPA-KHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMF 97 (394)
Q Consensus 20 ~~y~~f~l~G~~~llpwN~~ita~~yf~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~ 97 (394)
+..+.-++.|.+..+-||+. ||.-+ +.+ +.......+..-...+..-...-++ -+|+...--+..++...
T Consensus 375 lff~~av~mG~g~~lv~tFL-----fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~kl---I~kiGHv~v~~lgLa~~ 446 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFL-----FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKL---IEKIGHVNVMYLGLACN 446 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHH-----HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHH---HHHhcccceeeehhhHH
Confidence 34456678899999999998 66433 111 1122222322222333333333344 55555443345555555
Q ss_pred HHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCC-CCHHH
Q 016145 98 ALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGK-LPKQY 152 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~-fp~~~ 152 (394)
.+=++..+... .-|.++.+=++-|+..+..=..+.++++. .||+.
T Consensus 447 ~~Rf~~~S~L~----------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 447 VGRFLYYSYLQ----------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred HHHHHHHHHhc----------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 54455544322 25777888888888888888888777774 56654
No 203
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=57.32 E-value=1.3e+02 Score=29.42 Aligned_cols=73 Identities=3% Similarity=-0.032 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC
Q 016145 67 SLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG 146 (394)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~ 146 (394)
..+......++ .+|++.+..+..+..+..+........+ ..+..++...+.|++....+.....+..
T Consensus 267 ~~~~~~~~g~l---~~r~g~~~~l~~~~~l~~l~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 267 NALIMFCAPLI---INRIGAKNALLIAGTIMSVRIIGSSFAT----------TALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHH---HHHhccchhHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455 7777766555555555544443322211 1222234445566666666655555544
Q ss_pred C-CCHHH
Q 016145 147 K-LPKQY 152 (394)
Q Consensus 147 ~-fp~~~ 152 (394)
. .|++.
T Consensus 334 ~~~~~~~ 340 (396)
T TIGR00882 334 SQFDVRL 340 (396)
T ss_pred HhCCcce
Confidence 3 44443
No 204
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=57.13 E-value=66 Score=33.11 Aligned_cols=183 Identities=12% Similarity=0.069 Sum_probs=85.6
Q ss_pred hhhHHHHHhhhchhHHHHhhc-chHhhhcccCC----CCccchhhhH-hHHHHHHHHHHHHHhccCCcc-cCcce-e-hh
Q 016145 21 AYIIHFLLGAGNLLPWNAFIT-AVDYFGYLYPA----KHVEKVFSVA-YMTSSLLVLVLVICWGGWGSK-LSYRL-R-MN 91 (394)
Q Consensus 21 ~y~~f~l~G~~~llpwN~~it-a~~yf~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~~~-r-i~ 91 (394)
..++-++--.+.++....+++ ..-|+++.+.- +-+-+.++.. ..+..++...+.-++ ..| +|.+. | +.
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l---~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL---TFRILSETTVRKIF 335 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCchHhHHHHH
Confidence 446677777778888888887 55677654321 1133333322 222233444444455 332 33332 2 22
Q ss_pred H--HHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccchhhHHHH
Q 016145 92 L--GFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTASSGVLVSI 169 (394)
Q Consensus 92 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~sGv~~s~ 169 (394)
- ++....++++.++.++ .+.. +..+++..+.-...|...++++.=.-..-|+|..-++.-....|-++.+
T Consensus 336 n~i~~~~~ai~l~~l~~~~------~~~~--~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~ 407 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVLAFTS------DEHR--LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGF 407 (466)
T ss_pred HhHHHHHHHHHHHeeeecC------CCcc--hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 2222333333333322 1111 2222222222233444455554444443667776666554444444433
Q ss_pred HH-HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhc---cchHHH
Q 016145 170 LR-IITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLH---KLPVMQ 217 (394)
Q Consensus 170 l~-ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~---r~p~~~ 217 (394)
+. .+.....+|+ .+.+-...|.+.+++.+++.+.|...- ++|+.+
T Consensus 408 ~~P~~vg~~~~~~---t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~ 456 (466)
T KOG2532|consen 408 IAPLLVGIIVTDN---TREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTK 456 (466)
T ss_pred HHHHheeeEeCCC---CHHHHHHHHHHHHHHHHHhchheeEeecCcccCccC
Confidence 33 2344444321 234444567777777777776676552 455554
No 205
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=57.07 E-value=2.2e+02 Score=28.73 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=79.2
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhh
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLV 137 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~ 137 (394)
-++-......++...+.-+. ..++.+.+.-...|+...++++..+..... ..+ -+..-..++++|+++|+.
T Consensus 248 ~Lta~~~~G~L~G~~~~g~~--l~~~~~~~~~a~~G~~~~~~~f~lii~a~~----~~~---~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 248 RLTAFWGGGTLLGMLLAGFL--LSRRLGKKRTAALGCLLGALAFALIILAGP----LGS---PWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHHHHHHHHHHHHh----ccc---chHHHHHHHHHHHhhhHH
Confidence 34444445555554443333 133444333334566666666655544332 111 344455667788888888
Q ss_pred chhhhhhcCCCC-----HHHHHHHHhcc----cchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 016145 138 GGSLIGSAGKLP-----KQYMQAVFAGT----ASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSN 208 (394)
Q Consensus 138 q~s~~~la~~fp-----~~~~~a~~~G~----g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~ 208 (394)
..+.++..=-+- .-++++|-.-| |++++++..++-+.+...++ ++..+.-.-|.+-++..++++....
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---SPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 776654433222 23777776554 56677777788887777542 2333444456777777777776665
Q ss_pred hhccc
Q 016145 209 LLHKL 213 (394)
Q Consensus 209 ~l~r~ 213 (394)
.+.|+
T Consensus 396 ~l~~~ 400 (403)
T PF03209_consen 396 RLDRR 400 (403)
T ss_pred Hhhhh
Confidence 44443
No 206
>PRK03893 putative sialic acid transporter; Provisional
Probab=55.37 E-value=59 Score=32.91 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=56.2
Q ss_pred HHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
....+.++-.+|.....+... ..+|+.+..+. ++.....+.+... ++-+..++..++.|+..|-.......+.
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYGRRLAMVISI--VLFSVGTLACGFA----PGYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666555443222 23444333322 2222222222221 2234456677788887765555444555
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+..++++|..+..+......+|-.+|..++
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888877777777777777666544
No 207
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=54.51 E-value=2.2e+02 Score=27.87 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCcccchhhHHHHHhhhchhHHHHhhc-chHhhhcccCCC--CccchhhhHhHHHHH
Q 016145 14 PRDTYKVAYIIHFLLGAGNLLPWNAFIT-AVDYFGYLYPAK--HVEKVFSVAYMTSSL 68 (394)
Q Consensus 14 p~d~~~~~y~~f~l~G~~~llpwN~~it-a~~yf~~~~~~~--~~~~~~~~~~~~~~~ 68 (394)
++.++...++.-.+.-+.....|--+++ +..+|++||.-+ .-.+..+.+|-++..
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav 315 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAV 315 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhh
Confidence 3344445555555555555667777776 678999998422 234555566655544
No 208
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=50.75 E-value=54 Score=32.79 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 334 VPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 334 ~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
+..++..++.|+..|.+.+..-.+..+..++++|+.+.++......+|..+|..++-
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888887655555545455667777778877888888887776653
No 209
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=49.86 E-value=47 Score=33.27 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 335 PVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 335 ~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..++.=++.|+..|-....+..+..|..++++|..+..+.......|..+|..+.
T Consensus 126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667889988876666666767777778888888877777778877776553
No 210
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=49.57 E-value=71 Score=32.98 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=74.8
Q ss_pred HHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeee
Q 016145 279 LLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMIL 357 (394)
Q Consensus 279 ~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~ 357 (394)
.+..++++|-.+|......... -.+|+.++.+. +.++--.+++...+ +.+...+-=++.|+.-|......-+|
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~--~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV--VLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcchhh
Confidence 4567888888888887665332 23455544444 33333333333322 44566777788898889999888889
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 358 APKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 358 ~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
..|..+++.|..-......+.+.|+..|-+.+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888889999999999999999999866554
No 211
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=48.85 E-value=86 Score=32.11 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCC-CCchhhhHHHHHHHHHHHHH
Q 016145 303 IKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKT-VPVAEGEIAAIVMILSLGIG 381 (394)
Q Consensus 303 ~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~-v~~~ere~ag~~~~~~l~~G 381 (394)
+|+.+.... +++..-.+.|... ++.+..++.-++.|+.+|......+...++. .+++||..+..+.......|
T Consensus 70 rk~~l~~~~--~~~~~~~~~~~~a----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 70 FKRLLMLGG--TLFGLASLAAAFS----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred cHHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 455444433 4444434445542 2334455566778888776655444333343 35678888888888888888
Q ss_pred HHHHHHHH
Q 016145 382 LVGGSVLG 389 (394)
Q Consensus 382 i~~Gs~~s 389 (394)
-.+|..++
T Consensus 144 ~~~gp~lg 151 (495)
T PRK14995 144 AAFGPLVG 151 (495)
T ss_pred HHHHHHHH
Confidence 88777765
No 212
>PRK15075 citrate-proton symporter; Provisional
Probab=48.68 E-value=1.4e+02 Score=29.87 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 337 LVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 337 ~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
++.-++.|+..|........+..|..++++|..+..+.......|..+|..++
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778887766555556677778888998888776666555555554443
No 213
>PRK11043 putative transporter; Provisional
Probab=47.93 E-value=1.1e+02 Score=30.08 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=55.9
Q ss_pred HHHHHhhhhccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHhcC
Q 016145 248 VILIYIVTLSIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAACLHG 326 (394)
Q Consensus 248 ~fl~f~vTl~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~~~~ 326 (394)
.++.|+.+-...|..... .++...++...-....++.++-.+|......... .++|+.+.... ++.....+.+...
T Consensus 15 ~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~ 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAI-QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL--SLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH--HHHHHHHHHHHHh
Confidence 445556666666654221 1111112222233455666666666666544322 23444433322 2222112222221
Q ss_pred CCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 016145 327 PKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGS 386 (394)
Q Consensus 327 ~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs 386 (394)
++.+..++..++.|+..|...........+..+++++..+-.........|..+|.
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (401)
T PRK11043 92 ----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAP 147 (401)
T ss_pred ----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455566777766544433333334444555554443333333333434443
No 214
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=45.52 E-value=1.5e+02 Score=25.59 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=59.3
Q ss_pred chHHHHHHHHhhHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 275 WYPVLLITVYNVSDFVGKSLTAVYVPKSIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 275 w~~~~~~~~fn~gD~iGR~~~~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
....++...|.++-+++-.+.++ -.+|+.+++.. +.+ +++..++..| +.+..++--.+.|+.-+.+-+--
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~---lg~K~sm~lg~--~~y-~~y~~~~~~~----~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK---LGPKWSMILGS--LGY-AIYIASFFYP----NSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH---HhhHHHHHHHH--HHH-HHHHHHHHhh----hHHHHHHHHHHHhhhhHHhhHhh
Confidence 34456677787787776444332 23565544443 333 3455666533 34556666778888876555543
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWVW 392 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~~ 392 (394)
-.+--+..++++||.-..+-.-....+...|.+..++.
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333445555444444444456778887777654
No 215
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=44.27 E-value=1.8e+02 Score=27.85 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=22.4
Q ss_pred hhhhHhHHHHHHHHHHHHHhccCCcccCcceeh-hHHHHHHHHHH
Q 016145 58 VFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRM-NLGFSMFALSL 101 (394)
Q Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri-~~~~~~~~~~~ 101 (394)
.+...+.+...+..++.-++ .+|++.+.|. ..+..+..++.
T Consensus 236 ~~~~~~~~~~i~~~~~~g~l---~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 236 SLLALMQLAQAASALLIPAL---ARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HhhhccchHHHHHHHHHHHHHH
Confidence 34445666667777766666 7776444333 34444444443
No 216
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=44.22 E-value=3.3e+02 Score=28.09 Aligned_cols=91 Identities=7% Similarity=-0.055 Sum_probs=58.8
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceeh-hHHHHHHHHHHHHHhhhhccccc----------CCCcch-hhhhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRM-NLGFSMFALSLLVTPIIDWARNY----------SGSNGA-YGVTV 124 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-f~~~l 124 (394)
+.-...+.+.+.+..++..++ .|+++.+.|. ..+.++..+++..+..++....+ ..+... .+..+
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l---~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKL---CRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASAL 384 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHH
Confidence 334456677777777778888 7777655555 45666667777776654431100 001111 36677
Q ss_pred HHHHhhccchhhhchhhhhhcCCCCH
Q 016145 125 ASVVTCGLADGLVGGSLIGSAGKLPK 150 (394)
Q Consensus 125 i~~~~~g~~~~~~q~s~~~la~~fp~ 150 (394)
++....|++-+...+-=|++.+..-+
T Consensus 385 ~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 385 IVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 88888999999999988888887555
No 217
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.57 E-value=4e+02 Score=27.46 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.5
Q ss_pred hhhhhhHHHHhhccchhhhchhhhhhcCC-CCHHHHHHH
Q 016145 119 AYGVTVASVVTCGLADGLVGGSLIGSAGK-LPKQYMQAV 156 (394)
Q Consensus 119 ~f~~~li~~~~~g~~~~~~q~s~~~la~~-fp~~~~~a~ 156 (394)
.+.+.+++..+.|++++..|+..+.+.+. +|++-.|+.
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~f 390 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAF 390 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 47888999999999999999999888774 455555543
No 218
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=40.00 E-value=1.3e+02 Score=30.40 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=70.0
Q ss_pred hHHHHHhhhchhHHHHhhcchHhhhccc-CCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHH
Q 016145 23 IIHFLLGAGNLLPWNAFITAVDYFGYLY-PAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSL 101 (394)
Q Consensus 23 ~~f~l~G~~~llpwN~~ita~~yf~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 101 (394)
..|+-.|. -..-|+.+.+-. .+.. .++.....+...+...-.++.++...+ .+|++...-.....+..++..
T Consensus 244 ~~FlYVG~-Eva~gsfl~~y~---~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l---m~~~~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 244 AIFLYVGA-EVAIGSFLVSYL---EELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL---MSRIKPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHhH-HHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHH
Confidence 45666665 333466666532 2211 123334455555666667778777777 777666533222222222222
Q ss_pred HHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHH---HHHhcccchhhHHHHHH
Q 016145 102 LVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQ---AVFAGTASSGVLVSILR 171 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~---a~~~G~g~sGv~~s~l~ 171 (394)
+.+... +. .+.+..+.++|...+.+-.+.++++-.-=+++++ +...=..++|.+...++
T Consensus 317 ~~~~l~-------~g----~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGAiiP~l~ 378 (422)
T COG0738 317 LAVALI-------GG----VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQ 378 (422)
T ss_pred HHHHHh-------cC----hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecchHHHHHH
Confidence 222221 11 4456667778899999999999988753335544 33333444554444444
No 219
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=38.19 E-value=66 Score=33.31 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=34.0
Q ss_pred hhccchhhhchhh-hhhcCCCCHHHHHHHHhcccchhhHHHHHHHHHH
Q 016145 129 TCGLADGLVGGSL-IGSAGKLPKQYMQAVFAGTASSGVLVSILRIITK 175 (394)
Q Consensus 129 ~~g~~~~~~q~s~-~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~~ 175 (394)
+.|++ ++.|+.+ |+..-++ .+..+.++|.+++|.++.+...-..
T Consensus 380 i~gl~-GITEpAIPfgv~~p~--~~i~a~~iG~avgGa~~~~~gv~~~ 424 (482)
T PRK11404 380 VVGAT-VATEPAIPYALAAPL--PMITANTLAGGITGVLVIAFGIKRL 424 (482)
T ss_pred HHHHH-hcCcchhHHHHcCch--HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34433 7889999 8888776 6788889999999999888776443
No 220
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=38.01 E-value=1.2e+02 Score=31.70 Aligned_cols=101 Identities=15% Similarity=-0.022 Sum_probs=64.8
Q ss_pred HHHHHhhHHhhhhhhhcccccccchhHHHH-HHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeec
Q 016145 280 LITVYNVSDFVGKSLTAVYVPKSIKKAAWA-CTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILA 358 (394)
Q Consensus 280 ~~~~fn~gD~iGR~~~~~~~~~~~~~l~i~-s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~ 358 (394)
.+..|-++-+.|-.+++... .|++++. .++-.++--+..+. ++.+...+.-+++|+..|-.. ...-+.
T Consensus 71 F~ysYal~qIp~GlLaDrlG---~K~vL~l~~l~Wsl~t~L~~fa-------~Sl~~L~i~R~llGvaEA~~~-A~~syI 139 (511)
T TIGR00806 71 LPYSHLAVLVPVFLLTDYLR---YKPVLVLQALSFVCVWLLLLLG-------TSVWHMQLMEVFYSVTMAARI-AYSSYI 139 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45566666666666665543 3443332 23233322222221 234556788999999997666 444555
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 359 PKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 359 p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
.+.++++||..+..+...+..+|-++|+.++=.
T Consensus 140 ~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 140 FSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888999999999999999999888877643
No 221
>PRK10133 L-fucose transporter; Provisional
Probab=37.93 E-value=1e+02 Score=31.17 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=55.5
Q ss_pred HHHHHHHhhHHhhhhhhhcccc-cccchhHHHHHHHHHHHHHHHHHH---hcCCCCCccchhHHHHHHHHhhccccchhe
Q 016145 278 VLLITVYNVSDFVGKSLTAVYV-PKSIKKAAWACTGRLVFYPLFAAC---LHGPKWLKTEVPVLVLTSMLGFTNGYLTSV 353 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~-~~~~~~l~i~s~~R~~fiplf~~~---~~~~~~~~~d~~~~il~~l~gltnGy~~t~ 353 (394)
-.....|.+|=.++-....... ...+|+...... .++.--.+++ ... ++-+..++..++.|+..|...+.
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~--~~~~~~~~l~~~~~~a----~~~~~ll~~r~l~G~g~g~~~~~ 137 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWPAAEI----MNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666655544322 123455443333 2222111122 111 22234556778889999888777
Q ss_pred eeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 354 IMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 354 ~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
...+..+..++++|+...+........|..+|..++
T Consensus 138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554443445555555666666666776666553
No 222
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=36.45 E-value=5.2e+02 Score=27.00 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=50.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhh
Q 016145 57 KVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGL 136 (394)
Q Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~ 136 (394)
..+..+.-+..+++.++...+ .++++...-+..+.+...++++.+.+. ...+..++..++.|.+...
T Consensus 257 Gll~a~~gvGai~Gal~~~~l---~~~~~~~~lv~~~~~~~a~~~~~lal~----------~~~~~~~~~l~l~G~~~~~ 323 (524)
T PF05977_consen 257 GLLLAAFGVGAILGALLLPRL---RRRLSSRRLVLLASLLFALALLLLALS----------PSFWLALIALFLAGAAWII 323 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcccCcchhhHHHHHHHHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHH
Confidence 345556777888888888888 777776544555555555444444332 2356666677778877776
Q ss_pred hchhhhhhcC-CCCHHH
Q 016145 137 VGGSLIGSAG-KLPKQY 152 (394)
Q Consensus 137 ~q~s~~~la~-~fp~~~ 152 (394)
..++.-...- .-|+++
T Consensus 324 ~~~~~~t~~Q~~~P~~~ 340 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWV 340 (524)
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 6655544333 345554
No 223
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=35.44 E-value=1.3e+02 Score=31.39 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=64.1
Q ss_pred HHHHHhhhchh---HHHHhhc-chHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHH-
Q 016145 24 IHFLLGAGNLL---PWNAFIT-AVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFA- 98 (394)
Q Consensus 24 ~f~l~G~~~ll---pwN~~it-a~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~- 98 (394)
.|.++..+..+ .++.... -.+|-+++.-+++-.+.+.....+.+.++.++.-.. ..+.+.+.+....+.+.+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~l---aD~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLL---ADKPGIRALVLFLLTLLIA 375 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhh---cCccccchHHHHHHHHHHH
Confidence 44444444444 3333332 234444332233333444555777778888877777 555554444444433333
Q ss_pred -HHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhh-hhcCCCC-HHHHHHH---HhcccchhhHH
Q 016145 99 -LSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLI-GSAGKLP-KQYMQAV---FAGTASSGVLV 167 (394)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~-~la~~fp-~~~~~a~---~~G~g~sGv~~ 167 (394)
++.+..|.. ..++..+....+.|.+.|...+-.. -+....+ +++.+++ +.-+|++.+++
T Consensus 376 gl~~~~~p~~----------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g 440 (509)
T KOG2504|consen 376 GLARLFLPFA----------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVG 440 (509)
T ss_pred HHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence 333344432 2256666666677776666555442 3333444 3454443 33444444443
No 224
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=35.14 E-value=63 Score=34.60 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 336 VLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 336 ~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.++..++.|+..|-..+....+..+..++++|..+..+......+|-.+|-+++
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 456788999999888888888888888889999888888888887777775554
No 225
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=35.05 E-value=1.2e+02 Score=29.93 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=41.3
Q ss_pred chhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 333 EVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 333 d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
.....+.-++.|+..|.. ........+..+++||..+..+...+..+|..+|..++..
T Consensus 79 ~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 79 YEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred HHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889888743 2233333455677899999999999998998888776554
No 226
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=34.92 E-value=26 Score=34.75 Aligned_cols=43 Identities=16% Similarity=0.409 Sum_probs=33.9
Q ss_pred hhccchhhhchhh-hhhcCCCCHHHHHHHHhcccchhhHHHHHHHHH
Q 016145 129 TCGLADGLVGGSL-IGSAGKLPKQYMQAVFAGTASSGVLVSILRIIT 174 (394)
Q Consensus 129 ~~g~~~~~~q~s~-~~la~~fp~~~~~a~~~G~g~sGv~~s~l~ii~ 174 (394)
+.|.+ ++.|..+ |+..-++ +-.-+.++|.+++|.+..+...-.
T Consensus 254 isgl~-GITEpAIPFgv~~p~--r~i~a~~iGsaVgGal~~~~gv~~ 297 (359)
T PRK10478 254 VMGCV-GVTEGAIPFAAADPL--RVIPSIMVGSVCGAVTAALFGAQC 297 (359)
T ss_pred HHHHH-hcCccchHHHHhcch--HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444 7999999 9988877 677888999999999988877543
No 227
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=34.57 E-value=4.4e+02 Score=25.57 Aligned_cols=24 Identities=13% Similarity=-0.136 Sum_probs=11.6
Q ss_pred HHHHHHHHhccCCcccCcceehhHHHH
Q 016145 69 LVLVLVICWGGWGSKLSYRLRMNLGFS 95 (394)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~ri~~~~~ 95 (394)
+..++.-++ .+|++.+.-+..+..
T Consensus 259 ~g~~~~g~l---~~r~g~~~~l~~~~~ 282 (390)
T TIGR02718 259 LGCGGGAWL---VRRAGLWRTFILGVG 282 (390)
T ss_pred HHHHHHHHH---HHHhhHHHHHHHHHH
Confidence 334444455 667665433333443
No 228
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=34.23 E-value=3.4e+02 Score=24.20 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=50.7
Q ss_pred ccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCCCHHHHHHHHhcccc
Q 016145 83 KLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKLPKQYMQAVFAGTAS 162 (394)
Q Consensus 83 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~g~ 162 (394)
+.+.+.+....+....+.++....+.... ++.. ...+...+.+++.|...+.+-.+.+. .+...+++|
T Consensus 75 ~~~~~~~~~~~l~~~~~ll~~~~~~~~~~---~~~~---~~~~~~~~lafamg~Qn~~~~~~~g~---~~~Tt~~TG--- 142 (209)
T PF06912_consen 75 RRRRRRWYRILLLLEAILLLIAALLPPAF---PPHG---HRILAIFLLAFAMGMQNAAFRRLGGV---SIRTTFMTG--- 142 (209)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhc---ccch---HHHHHHHHHHHHHHHHHHHHHHcCCC---cccchhhHh---
Confidence 33344455555555555555554443321 1111 33344445555566555544444432 333344443
Q ss_pred hhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 016145 163 SGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSN 208 (394)
Q Consensus 163 sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~ 208 (394)
-+..+.+-+.....++++ .+.....|+.+-..+...+++...
T Consensus 143 --~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~f~~Ga~~ga~ 184 (209)
T PF06912_consen 143 --NLTDLGIDLARYLRGKDR--ALRRALRYLLIILSFFIGAILGAL 184 (209)
T ss_pred --hHHHHHHHHHHHHhCCch--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244454545554443322 345555666655555555555443
No 229
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=32.31 E-value=5.6e+02 Score=26.17 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCCCCCcccchhhHHHHHhhhchhHHHHhhcch---HhhhcccCC-----CCccchhhhHhHHHHHHHHHHHHHhccCC
Q 016145 10 QPVEPRDTYKVAYIIHFLLGAGNLLPWNAFITAV---DYFGYLYPA-----KHVEKVFSVAYMTSSLLVLVLVICWGGWG 81 (394)
Q Consensus 10 ~~~~p~d~~~~~y~~f~l~G~~~llpwN~~ita~---~yf~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (394)
+++.|+-+++..-|.++=.|. -|++++.+.. .||++...+ .+-+++...++.++.++..++.+.+|...
T Consensus 6 ~~~~~~~~~~~~sWilyD~~~---~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~ia 82 (438)
T COG2270 6 RSRMPKLRKGIKSWILYDWGS---SPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIA 82 (438)
T ss_pred hhhcccccccceeEEEeeccC---CceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334555666666566665554 4778877653 788776543 23466777888889898888888887777
Q ss_pred cccCcceehhHHHHHHH-HHHHHHhhhhcccccCCCcchhhhhh---HHHHhhccchhhhchhhhhhcC
Q 016145 82 SKLSYRLRMNLGFSMFA-LSLLVTPIIDWARNYSGSNGAYGVTV---ASVVTCGLADGLVGGSLIGSAG 146 (394)
Q Consensus 82 ~~~~~~~ri~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~l---i~~~~~g~~~~~~q~s~~~la~ 146 (394)
++-..|.+...-++... +++..+..+. +. ...+..+ ++..+..-++.+.+++++.-..
T Consensus 83 D~~g~Rk~~~~~f~~i~i~~~~~L~~i~------~~-s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~ 144 (438)
T COG2270 83 DYPGPRKKFFGFFTAIGIISTFLLWFIP------PG-SYLLLLLLFLILASIGFEFSNVFYDSMLPRLT 144 (438)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhC------CC-chHHHHHHHHHHHHHhcchhheehhhHhhhhc
Confidence 77666666554444433 2222222211 11 2233222 3333334456667777766433
No 230
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.03 E-value=6e+02 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=38.0
Q ss_pred hHHHHHhhhchhHHHHhhcchHhhhcc---cCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccC
Q 016145 23 IIHFLLGAGNLLPWNAFITAVDYFGYL---YPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLS 85 (394)
Q Consensus 23 ~~f~l~G~~~llpwN~~ita~~yf~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 85 (394)
+.|.+...+.-++=|.+.+-.+++-.. |.. .-.+.+++.+-+..++..++...+ ..|+.
T Consensus 276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~-~~a~~ls~~~~~~g~v~~i~ag~l---sdr~~ 337 (495)
T KOG2533|consen 276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSE-LQANLLSTPYDVGGIVGLILAGYL---SDRLK 337 (495)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHcCCCcCh-HHhccccchHHhhhHHHHHHHHHH---HHHHh
Confidence 566666667777777676655555333 211 124567778888888888887777 77654
No 231
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=32.02 E-value=5.6e+02 Score=26.07 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHH
Q 016145 314 LVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIA 370 (394)
Q Consensus 314 ~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~a 370 (394)
.+.+|.+++....+. ......-+.+.+++.--..|..+....+..+++||..+
T Consensus 337 ~~~vP~~llls~~~~----~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~ 389 (451)
T KOG2615|consen 337 LLIVPAFLLLSLART----PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTL 389 (451)
T ss_pred HHHHHHHHHHhcccc----chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHH
Confidence 567888766554221 12234556666777777777777766666667777544
No 232
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=27.86 E-value=2e+02 Score=29.69 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHhhccccchheeee--ecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 342 MLGFTNGYLTSVIMI--LAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 342 l~gltnGy~~t~~mi--~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
+.|++.|+....+-. +.++..+.++|-.+-.+++-+...|+.+|..++-.
T Consensus 119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 889999888887754 45676778899888888888788888777776654
No 233
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=24.37 E-value=7.3e+02 Score=25.52 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=59.6
Q ss_pred HHHHhhcch-HhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcce--ehhHHHHHHHHHHHHHhhhhcc
Q 016145 35 PWNAFITAV-DYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRL--RMNLGFSMFALSLLVTPIIDWA 110 (394)
Q Consensus 35 pwN~~ita~-~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--ri~~~~~~~~~~~~~~~~~~~~ 110 (394)
..|++++.. -|-++.+.-++ -...+.+..++....+.++.-++ .+|+..+. -+..++++.. ++++....
T Consensus 296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l---~~r~g~k~~~~l~~~l~~~~----~i~~~g~~ 368 (477)
T PF11700_consen 296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWL---QDRFGPKTKRTLLISLILWI----IIPLYGLF 368 (477)
T ss_pred HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCchhHHHHHHHHHHH----HHHHHHHH
Confidence 567777644 44333332111 12344566777777777777788 99988884 2333333332 11111111
Q ss_pred -----cccCCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHHHHHHHhcccchhhH
Q 016145 111 -----RNYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQYMQAVFAGTASSGVL 166 (394)
Q Consensus 111 -----~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~~~a~~~G~g~sGv~ 166 (394)
..+..+..-| .+...+.|.+.|-.|+..=++.+ +.|+...+-+..=-++.|=.
T Consensus 369 G~~~~~~g~~~~~~f---~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 369 GFWPSFFGLKSPWEF---WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred HhhhcccCcccHHHH---HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 0011111123 34455567777777776655555 45655544444333333333
No 234
>PF04276 DUF443: Protein of unknown function (DUF443) ; InterPro: IPR005915 The members of this family share 50 % or greater sequence identity. They are found as eleven tandem genes, arranged head-to-tail, in Staphylococcus aureus (strain COL). Distant full-length homologs are found in a Staphylococcus haemolyticus plasmid and in Bacillus halodurans. The function of these proteins is unknown.
Probab=23.04 E-value=3.8e+02 Score=24.08 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=12.3
Q ss_pred hHHHHHHHhhHhHHHHHHHH
Q 016145 233 AIWRVGRRIRLPAFGVILIY 252 (394)
Q Consensus 233 ~~~~v~k~i~~~~~~~fl~f 252 (394)
+.+..++.+..+.+..+++.
T Consensus 135 ~~K~~~~~lf~yi~~~~~~i 154 (199)
T PF04276_consen 135 TFKNFFKNLFAYIFFLFFSI 154 (199)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 67777777776655444433
Done!