Query 016145
Match_columns 394
No_of_seqs 120 out of 781
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.8 1.3E-07 4.5E-12 93.2 16.8 333 34-389 42-403 (451)
2 3o7q_A L-fucose-proton symport 98.5 3.5E-06 1.2E-10 82.6 16.1 326 36-387 42-399 (438)
3 2gfp_A EMRD, multidrug resista 97.7 2.3E-05 7.8E-10 75.3 5.0 315 33-386 13-343 (375)
4 4aps_A DI-OR tripeptide H+ sym 97.7 0.00036 1.2E-08 69.4 13.3 58 332-389 385-442 (491)
5 4gc0_A D-xylose-proton symport 97.3 0.0079 2.7E-07 59.5 16.7 191 22-216 11-226 (491)
6 2xut_A Proton/peptide symporte 96.8 0.0037 1.3E-07 62.6 9.4 58 332-389 404-461 (524)
7 2cfq_A Lactose permease; trans 92.1 0.093 3.2E-06 51.0 3.8 36 59-97 48-83 (417)
8 1pw4_A Glycerol-3-phosphate tr 91.7 0.58 2E-05 45.0 9.1 109 278-389 65-175 (451)
9 3o7q_A L-fucose-proton symport 89.8 0.46 1.6E-05 45.6 6.3 112 274-391 60-175 (438)
10 2cfq_A Lactose permease; trans 89.4 0.59 2E-05 45.1 6.8 77 64-153 269-346 (417)
11 2xut_A Proton/peptide symporte 88.0 0.8 2.7E-05 45.3 6.8 107 278-389 57-168 (524)
12 4aps_A DI-OR tripeptide H+ sym 87.3 0.57 2E-05 45.9 5.2 107 277-389 56-166 (491)
13 4gc0_A D-xylose-proton symport 86.2 1.2 4E-05 43.6 6.7 44 59-105 317-360 (491)
14 2gfp_A EMRD, multidrug resista 81.4 1.2 4.2E-05 41.7 4.4 107 277-390 37-145 (375)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.79 E-value=1.3e-07 Score=93.17 Aligned_cols=333 Identities=13% Similarity=0.082 Sum_probs=166.0
Q ss_pred hHHHHhhcchHhhhcccCCCCccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccccc
Q 016145 34 LPWNAFITAVDYFGYLYPAKHVEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNY 113 (394)
Q Consensus 34 lpwN~~ita~~yf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 113 (394)
+.++.+....+++.+++.+......+...+.++..+.+...-.+ .+|+..|.-+..+..+..++.+........
T Consensus 42 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l---~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--- 115 (451)
T 1pw4_A 42 LVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSV---SDRSNPRVFLPAGLILAAAVMLFMGFVPWA--- 115 (451)
T ss_dssp HHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHH---HHhcCchHHHHHHHHHHHHHHHHHHhhhhc---
Confidence 34444444455555544222233455556777777777666666 777777655666666666665555431110
Q ss_pred CCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHH----HHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcchh
Q 016145 114 SGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQ----YMQAVFAGTASSGVLVSILRIITKASLPQTPQGLRTS 188 (394)
Q Consensus 114 ~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~----~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~ 188 (394)
...++..++.-++.|++.+.......++.+ .+|++ ..+-...+.+++++++..+.-......+ +.+..
T Consensus 116 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~w~~~ 188 (451)
T 1pw4_A 116 ---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAA 188 (451)
T ss_dssp ---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CSTTC
T ss_pred ---cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHHHH
Confidence 112555666777888888888887777765 45643 3444556666666666555432211111 12222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhc-c--------ccccc---hh--HHHHH--HHhhHhHHHHHHHH
Q 016145 189 AHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLID-D--------ALSSR---QA--IWRVG--RRIRLPAFGVILIY 252 (394)
Q Consensus 189 ~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~-~--------~~~~~---~~--~~~v~--k~i~~~~~~~fl~f 252 (394)
|...+.+..+..++.+..+++.|..+...+.+++ + +++++ .+ .++.+ |+.|...+..++..
T Consensus 189 ---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 189 ---LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY 265 (451)
T ss_dssp ---THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHH
Confidence 2223333323333344445544422110000000 0 00001 11 12222 33444444444444
Q ss_pred hhhh---ccccceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccccc---cchhHHHHH-HHHHHHHHHHHHHhc
Q 016145 253 IVTL---SIFPGFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVPK---SIKKAAWAC-TGRLVFYPLFAACLH 325 (394)
Q Consensus 253 ~vTl---~vFPgv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~---~~~~l~i~s-~~R~~fiplf~~~~~ 325 (394)
+... ...|-...+ ....+....-.....+.++..+|+.+..+...+ ++|+.+... ..-. .+-+.++. .
T Consensus 266 ~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 340 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIVYW-M 340 (451)
T ss_dssp HHHHHHHHHHHHHBTT---BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHH-H
Confidence 3322 233322211 111122333456778889999999887654322 344433222 2111 11111111 1
Q ss_pred CCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHH-HHHHHHHHH
Q 016145 326 GPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGI-GLVGGSVLG 389 (394)
Q Consensus 326 ~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~-Gi~~Gs~~s 389 (394)
.+. .+.+...+..++.|+..|........+..+..++++|..+..+....... |-.+|..+.
T Consensus 341 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 341 NPA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp CCT--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23345667777888877766666556666767778888888888877777 777776553
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.46 E-value=3.5e-06 Score=82.57 Aligned_cols=326 Identities=14% Similarity=0.088 Sum_probs=155.9
Q ss_pred HHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccC
Q 016145 36 WNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYS 114 (394)
Q Consensus 36 wN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 114 (394)
++..-...+++++++.-++ -...+...+.+...+.....-.+ .+|+..|.-+..+.++..+..+.......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l---~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----- 113 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL---MKKLSYKAGIITGLFLYALGAALFWPAAE----- 113 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhcchHHHHHHHHHHHHHHHHHHhccc-----
Confidence 3444445566766663222 22344455666666666666666 77877776677777776666555522111
Q ss_pred CCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHH----HHHHHhcccchhhHHHHHHHHHH-HhCCCCCCC----
Q 016145 115 GSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQY----MQAVFAGTASSGVLVSILRIITK-ASLPQTPQG---- 184 (394)
Q Consensus 115 ~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~sGv~~s~l~ii~~-~~~~~~~~~---- 184 (394)
...++..++.-++.|++.+..+....++.+ .+|++. .+-...+.+++++++..+.-... ...++...+
T Consensus 114 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 191 (438)
T 3o7q_A 114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDK 191 (438)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHH
T ss_pred --cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 123666677788899999988888777766 456443 45666677777777666544333 221110000
Q ss_pred ------cch-------hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhccc-cccchhHHHHHH--HhhHhHHHH
Q 016145 185 ------LRT-------SAHFYFIVSTIIMLCCCLGSNLLHKLPVMQQHYRLLIDDA-LSSRQAIWRVGR--RIRLPAFGV 248 (394)
Q Consensus 185 ------~~~-------~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~-~~~~~~~~~v~k--~i~~~~~~~ 248 (394)
... -...|...+....+..++ +.. .+.|..++ +++++++ .+.+.+.++++| +.|...+..
T Consensus 192 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T 3o7q_A 192 MSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL-IML-TKFPALQS--DNHSDAKQGSFSASLSRLARIRHWRWAVLAQ 267 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-CCCCCCTT--TCCCCSSTTSHHHHHHHHTTCSHHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHH-HcCCcccc--cccccccccchhhhHHHHHhChHHHHHHHHH
Confidence 000 022333333333333222 222 22221110 1111111 122234455543 444444444
Q ss_pred HHHHhhhh---ccccce-eeeecccccCCCchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHH
Q 016145 249 ILIYIVTL---SIFPGF-IGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAAC 323 (394)
Q Consensus 249 fl~f~vTl---~vFPgv-~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~ 323 (394)
++.+.... ...|.. ..+ ....+.-..-.....+.++..+||....+... .++|+.+.... ++.....++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~--~~~~~~~~~~ 342 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEE---IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA--LIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc---cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHH
Confidence 44333222 233333 211 10112222334567788899999988765432 23444332222 2222112222
Q ss_pred hcCCCCCccchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 016145 324 LHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSV 387 (394)
Q Consensus 324 ~~~~~~~~~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~ 387 (394)
... + +.+..+..+++|+..|-.......+..+..+++ +..+..+.... .+|-.+|..
T Consensus 343 ~~~----~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~~ 399 (438)
T 3o7q_A 343 AFA----G-GHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGGGIVTP 399 (438)
T ss_dssp HHC----C-HHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-THHHHHHHH
T ss_pred HHc----C-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-HHHHHHHHH
Confidence 221 1 123344556777777766666666656655544 66665555533 344444443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.72 E-value=2.3e-05 Score=75.32 Aligned_cols=315 Identities=13% Similarity=0.041 Sum_probs=154.7
Q ss_pred hhHHHHhhcchHhhhcccCCCC-ccchhhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhccc
Q 016145 33 LLPWNAFITAVDYFGYLYPAKH-VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWAR 111 (394)
Q Consensus 33 llpwN~~ita~~yf~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 111 (394)
.+.++.+....+.+.+++..++ ........+.+...+.+...-.+ .+|++.|.-+..+..+..+..+.....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l---~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 86 (375)
T 2gfp_A 13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPI---SDRVGRRPVILVGMSIFMLATLVAVTTS--- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHH---HTTSCCCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCchhHHHHHHHHHHHHHHHHHhc---
Confidence 3445555555555555553222 23344555666666666666666 8888877777777777666665554422
Q ss_pred ccCCCcchhhhhhHHHHhhccchhhhchhhhhhcCCC-CH----HHHHHHHhcccchhhHHHHHHHHHHHhCCCCCCCcc
Q 016145 112 NYSGSNGAYGVTVASVVTCGLADGLVGGSLIGSAGKL-PK----QYMQAVFAGTASSGVLVSILRIITKASLPQTPQGLR 186 (394)
Q Consensus 112 ~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~~f-p~----~~~~a~~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~ 186 (394)
.++..++..++.|++.+..+....++.+.. |+ +..+....+.+++++++..+.-. ..+ .
T Consensus 87 -------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~------~ 150 (375)
T 2gfp_A 87 -------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL---LDT------M 150 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH---SSC------H
T ss_pred -------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHH------h
Confidence 255666677778888887777766665532 22 34555666666666665554322 110 0
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHhhccchHHHHHHHhhhccccccchhHHHHH--HHhhHhHHHHHHHHhhhhc---ccc
Q 016145 187 TSAHFYFIVSTIIMLCCCL-GSNLLHKLPVMQQHYRLLIDDALSSRQAIWRVG--RRIRLPAFGVILIYIVTLS---IFP 260 (394)
Q Consensus 187 ~~~~~yF~i~~~~~~~~~~-~~~~l~r~p~~~~~~~~~~~~~~~~~~~~~~v~--k~i~~~~~~~fl~f~vTl~---vFP 260 (394)
.+--.-|.+..++.+++.+ ....+++.|. +++++++.+++.++.+ |+.|...+..++.++.... ..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRP-------VDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSG 223 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCST-------TTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCC-------CCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122333333333322 2233333221 1111112222333333 3455555544444433322 233
Q ss_pred ceeeeecccccCCCchHHHHHHHHhhHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhcC--CCCC--ccchhH
Q 016145 261 GFIGEDLESKLLRDWYPVLLITVYNVSDFVGKSLTAVYVPKSIKKAAWACTGRLVFYPLFAACLHG--PKWL--KTEVPV 336 (394)
Q Consensus 261 gv~~~~~~~~~~~~w~~~~~~~~fn~gD~iGR~~~~~~~~~~~~~l~i~s~~R~~fiplf~~~~~~--~~~~--~~d~~~ 336 (394)
-...+. ...++...-.....+.++..+|+....+...+..++....... ....+..- .... ++.+..
T Consensus 224 ~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 224 VLMGAV---LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVIC------CLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp CSSHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHH------HHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccccHHHH
Confidence 222110 0111122234567788899999988765432211111111110 00000000 0000 123334
Q ss_pred HHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 016145 337 LVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGS 386 (394)
Q Consensus 337 ~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs 386 (394)
++..++.|+..|........+..+..+ ++|..+..+.+.....|-.+|+
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 567778888887776666666666554 6777777777766666665544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.68 E-value=0.00036 Score=69.43 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 332 TEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 332 ~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.++..+..++.|+..|........+..+..++++|..+..+.......|-.+|+.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667788888888887777777777777778888888888888888888877664
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.25 E-value=0.0079 Score=59.49 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=95.2
Q ss_pred hhHHHHHhhhc-hhHHHHhh--cchHhhhcccCCC-C--------ccchhhhHhHHHHHHHHHHHHHhccCCcccCccee
Q 016145 22 YIIHFLLGAGN-LLPWNAFI--TAVDYFGYLYPAK-H--------VEKVFSVAYMTSSLLVLVLVICWGGWGSKLSYRLR 89 (394)
Q Consensus 22 y~~f~l~G~~~-llpwN~~i--ta~~yf~~~~~~~-~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 89 (394)
|.+-++..+|. +..|+.-+ .+.+.+++.+..+ + ....+...+.+...++.++.-.+ .+|+..|.-
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~l---aDr~GRk~~ 87 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYC---SNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH---HHHTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHH
Confidence 33334445544 45776544 2456665544211 1 12233445666666777766666 777776666
Q ss_pred hhHHHHHHHHHHHHHhhhhccccc--------CCCcchhhhhhHHHHhhccchhhhchhhhhhcC-CCCHHHH----HHH
Q 016145 90 MNLGFSMFALSLLVTPIIDWARNY--------SGSNGAYGVTVASVVTCGLADGLVGGSLIGSAG-KLPKQYM----QAV 156 (394)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~~li~~~~~g~~~~~~q~s~~~la~-~fp~~~~----~a~ 156 (394)
+..+.+++.++.+........... ..-...+...++.=++.|++.|........+.+ ..|++.- ...
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 666766666655544321110000 001223556667777888888877777766666 4565443 333
Q ss_pred HhcccchhhHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhccchHH
Q 016145 157 FAGTASSGVLVSILRIITKASLPQTPQGLRTSAHFYFIVSTIIMLCCCLGSNLLHKLPVM 216 (394)
Q Consensus 157 ~~G~g~sGv~~s~l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~ 216 (394)
..+...+.+++...........+.... ....-...+.+..+..++.++....++.+|..
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~ 226 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWL-NTDGWRYMFASECIPALLFLMLLYTVPESPRW 226 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTT-TTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccc-cchhhHHHhhhhhhhhhhhhhhhhcCCCChHH
Confidence 444444555555444433332221111 11222233444444444444445556666643
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.79 E-value=0.0037 Score=62.60 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHhhccccchheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 332 TEVPVLVLTSMLGFTNGYLTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 332 ~d~~~~il~~l~gltnGy~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
+.++..+..+++|+..|........+..+..++++|..+..+.+....+|-.+|..+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788889988888777777776767777888877777777777777776554
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.10 E-value=0.093 Score=50.98 Aligned_cols=36 Identities=22% Similarity=0.033 Sum_probs=21.8
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHH
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMF 97 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~ 97 (394)
....+.+...+.+.+.=.+ .+|+..|..+..+..+.
T Consensus 48 ~~~~~~~~~~i~~~~~G~l---sDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 48 IFAAISLFSLLFQPLFGLL---SDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcchHHHHHHHHHH
Confidence 3344555666666665566 88888776665555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.67 E-value=0.58 Score=45.00 Aligned_cols=109 Identities=10% Similarity=-0.153 Sum_probs=69.6
Q ss_pred HHHHHHHhhHHhhhhhhhccccc-ccchhHHHHH-HHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheee
Q 016145 278 VLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWAC-TGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIM 355 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s-~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~m 355 (394)
-.....+.++..++......... ..+|+.+..+ +...+.. +++...+..-++.+..++..++.|+..|.......
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM---LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH---HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHH
Confidence 34567778888887776654332 2344443333 3222222 22211000012334567778889999988888877
Q ss_pred eecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016145 356 ILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 356 i~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
.+.++..++++|..+..+......+|..+|..++
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999988887776
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=89.75 E-value=0.46 Score=45.62 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=73.2
Q ss_pred CchHHHHHHHHhhHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHH---hcCCCCCccchhHHHHHHHHhhcccc
Q 016145 274 DWYPVLLITVYNVSDFVGKSLTAVYVP-KSIKKAAWACTGRLVFYPLFAAC---LHGPKWLKTEVPVLVLTSMLGFTNGY 349 (394)
Q Consensus 274 ~w~~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l~i~s~~R~~fiplf~~~---~~~~~~~~~d~~~~il~~l~gltnGy 349 (394)
+...-.+...+.++..++......... ..+|+.++... ++.....+++ .. .++.+..++..++.|+..|-
T Consensus 60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~ 133 (438)
T 3o7q_A 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGC 133 (438)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHH
Confidence 333445577888888888777654332 23455433332 2221111222 22 13345567788899999988
Q ss_pred chheeeeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016145 350 LTSVIMILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGWV 391 (394)
Q Consensus 350 ~~t~~mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~~ 391 (394)
.......+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888999998889999999999888876543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=89.39 E-value=0.59 Score=45.14 Aligned_cols=77 Identities=4% Similarity=-0.067 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHhhhhcccccCCCcchhhhhhHHHHhhccchhhhchhhhh
Q 016145 64 MTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTPIIDWARNYSGSNGAYGVTVASVVTCGLADGLVGGSLIG 143 (394)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~li~~~~~g~~~~~~q~s~~~ 143 (394)
.+.+.+..++.-++ .+|+..+..+..+..+..+.++..... ++ .+..++...+.+.+.+..+.....
T Consensus 269 ~~~~~~~~~~~g~l---~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 269 ELLNASIMFFAPLI---INRIGGKNALLLAGTIMSVRIIGSSFA-------TS---ALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHTTC-------CS---HHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHh-------cc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566 777665544555554444443333211 11 122223333344444444444444
Q ss_pred hcC-CCCHHHH
Q 016145 144 SAG-KLPKQYM 153 (394)
Q Consensus 144 la~-~fp~~~~ 153 (394)
+.+ .+|++..
T Consensus 336 ~~~~~~p~~~~ 346 (417)
T 2cfq_A 336 YITSQFEVRFS 346 (417)
T ss_dssp HHHHHSCHHHH
T ss_pred HHHHHCCHHHH
Confidence 444 5677654
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=88.00 E-value=0.8 Score=45.32 Aligned_cols=107 Identities=7% Similarity=-0.018 Sum_probs=62.8
Q ss_pred HHHHHHHhhHHhhhhhhhccccc-c-cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchheee
Q 016145 278 VLLITVYNVSDFVGKSLTAVYVP-K-SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVIM 355 (394)
Q Consensus 278 ~~~~~~fn~gD~iGR~~~~~~~~-~-~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~m 355 (394)
-.....+.++..+|.....+... . .+|+.+.... ++.....+++...+ .+.+..++..++.|+..|.......
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS--LIYCVGHAFLAIFE---HSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH--HHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhccccchhHH
Confidence 34566777788777776554322 2 3455433332 22222122222211 1345566778888999888877777
Q ss_pred eecCCCCCchhhhHHHHH---HHHHHHHHHHHHHHHH
Q 016145 356 ILAPKTVPVAEGEIAAIV---MILSLGIGLVGGSVLG 389 (394)
Q Consensus 356 i~~p~~v~~~ere~ag~~---~~~~l~~Gi~~Gs~~s 389 (394)
.+.++..++++|..+... ......+|..+|..++
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788766655 6666667776666543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=87.31 E-value=0.57 Score=45.89 Aligned_cols=107 Identities=6% Similarity=0.114 Sum_probs=64.5
Q ss_pred HHHHHHHHhhHHhhhhhhhcccccc--cchhHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 277 PVLLITVYNVSDFVGKSLTAVYVPK--SIKKAAWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 277 ~~~~~~~fn~gD~iGR~~~~~~~~~--~~~~l~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
.-.....+.++-.+|+....+...+ .+|+.+.... ++.....+++... ++.+..++..++.|+..|-.....
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~ 129 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG--VLIMLGHIVLALP----FGASALFGSIILIIIGTGFLKPNV 129 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHHHHHHHSC----CSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHhccchH
Confidence 3455677888888887776653322 3455443332 2322222233321 334556778888899988877777
Q ss_pred eeecCCCCCchh--hhHHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAE--GEIAAIVMILSLGIGLVGGSVLG 389 (394)
Q Consensus 355 mi~~p~~v~~~e--re~ag~~~~~~l~~Gi~~Gs~~s 389 (394)
..+..+..++++ |..+.........+|..+|..++
T Consensus 130 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 130 STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 776666666666 55566666677777777766554
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=86.24 E-value=1.2 Score=43.58 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=26.0
Q ss_pred hhhHhHHHHHHHHHHHHHhccCCcccCcceehhHHHHHHHHHHHHHh
Q 016145 59 FSVAYMTSSLLVLVLVICWGGWGSKLSYRLRMNLGFSMFALSLLVTP 105 (394)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 105 (394)
.+....+..++..++...+ .+|+..|.....+.....++++.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l---~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMT---VDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhhcCcchhccchHHHHHHHHHHH
Confidence 3444555556666666666 6676666666666666655555444
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=81.43 E-value=1.2 Score=41.74 Aligned_cols=107 Identities=7% Similarity=0.002 Sum_probs=67.0
Q ss_pred HHHHHHHHhhHHhhhhhhhccccc-ccchhH-HHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHhhccccchhee
Q 016145 277 PVLLITVYNVSDFVGKSLTAVYVP-KSIKKA-AWACTGRLVFYPLFAACLHGPKWLKTEVPVLVLTSMLGFTNGYLTSVI 354 (394)
Q Consensus 277 ~~~~~~~fn~gD~iGR~~~~~~~~-~~~~~l-~i~s~~R~~fiplf~~~~~~~~~~~~d~~~~il~~l~gltnGy~~t~~ 354 (394)
.-.....+.++..+++....+... .++|+. .+..+...+...+.... ++.+..++..++.|+..|......
T Consensus 37 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 37 VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhH
Confidence 345577888888888777655332 233443 33334333332222111 233455677788888888777776
Q ss_pred eeecCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016145 355 MILAPKTVPVAEGEIAAIVMILSLGIGLVGGSVLGW 390 (394)
Q Consensus 355 mi~~p~~v~~~ere~ag~~~~~~l~~Gi~~Gs~~s~ 390 (394)
..+.++..+++||..+..........|..+|..++-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666666566678888888888888888888877653
Done!