Your job contains 1 sequence.
>016147
MHALLLLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIE
RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVR
AQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNN
DYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSE
IPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILV
VSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDIL
NSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016147
(394 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176100 - symbol:RPN5B "AT5G64760" species:370... 1627 2.9e-167 1
TAIR|locus:2178138 - symbol:EMB2107 "AT5G09900" species:3... 1213 2.1e-123 1
DICTYBASE|DDB_G0281051 - symbol:psmD12 "26S proteasome no... 529 9.5e-80 2
ZFIN|ZDB-GENE-030131-617 - symbol:psmd12 "proteasome (pro... 767 3.9e-76 1
UNIPROTKB|F1NPQ0 - symbol:LOC100859465 "Uncharacterized p... 760 2.1e-75 1
UNIPROTKB|O00232 - symbol:PSMD12 "26S proteasome non-ATPa... 756 5.7e-75 1
UNIPROTKB|Q5RBI3 - symbol:PSMD12 "26S proteasome non-ATPa... 756 5.7e-75 1
UNIPROTKB|F1RSM2 - symbol:PSMD12 "Uncharacterized protein... 754 9.3e-75 1
UNIPROTKB|Q2KJ25 - symbol:PSMD12 "26S proteasome non-ATPa... 753 1.2e-74 1
RGD|1359305 - symbol:Psmd12 "proteasome (prosome, macropa... 748 4.0e-74 1
MGI|MGI:1914247 - symbol:Psmd12 "proteasome (prosome, mac... 745 8.4e-74 1
UNIPROTKB|G5EHP6 - symbol:MGCH7_ch7g327 "26S proteasome r... 443 4.2e-69 2
ASPGD|ASPL0000076235 - symbol:AN4775 species:162425 "Emer... 695 1.7e-68 1
SGD|S000002306 - symbol:RPN5 "Subunit of the CSN and 26S ... 440 1.1e-66 2
FB|FBgn0028690 - symbol:Rpn5 "Regulatory particle non-ATP... 322 3.2e-64 3
POMBASE|SPAC1420.03 - symbol:rpn501 "19S proteasome regul... 385 7.8e-60 2
POMBASE|SPAPB8E5.02c - symbol:rpn502 "19S proteasome regu... 385 7.8e-60 2
WB|WBGene00004461 - symbol:rpn-5 species:6239 "Caenorhabd... 350 5.4e-57 2
GENEDB_PFALCIPARUM|PF10_0174 - symbol:PF10_0174 "26s prot... 387 7.2e-36 1
UNIPROTKB|Q8IJM0 - symbol:PF10_0174 "26s proteasome subun... 387 7.2e-36 1
FB|FBgn0027054 - symbol:CSN4 "COP9 complex homolog subuni... 155 1.2e-10 2
RGD|1302952 - symbol:Cops4 "COP9 signalosome subunit 4" s... 138 1.7e-08 2
UNIPROTKB|D6RAX7 - symbol:COPS4 "COP9 signalosome complex... 140 2.3e-08 2
UNIPROTKB|Q3SZA0 - symbol:COPS4 "COP9 signalosome complex... 138 3.5e-08 2
UNIPROTKB|E2RT55 - symbol:COPS4 "Uncharacterized protein"... 138 3.5e-08 2
UNIPROTKB|Q9BT78 - symbol:COPS4 "COP9 signalosome complex... 138 3.5e-08 2
UNIPROTKB|A7Y521 - symbol:COPS4 "COP9 signalosome complex... 138 3.5e-08 2
UNIPROTKB|Q5ZJV0 - symbol:COPS4 "Uncharacterized protein"... 138 3.6e-08 2
WB|WBGene00000816 - symbol:csn-4 species:6239 "Caenorhabd... 154 3.7e-08 1
UNIPROTKB|Q9N359 - symbol:csn-4 "COP9 signalosome complex... 154 3.7e-08 1
MGI|MGI:1349414 - symbol:Cops4 "COP9 (constitutive photom... 138 4.4e-08 2
ZFIN|ZDB-GENE-030131-4317 - symbol:cops4 "COP9 constituti... 133 8.0e-08 2
UNIPROTKB|D6RD63 - symbol:COPS4 "COP9 signalosome complex... 137 1.2e-06 1
DICTYBASE|DDB_G0293844 - symbol:csn4 "proteasome componen... 127 3.6e-06 2
TAIR|locus:2159961 - symbol:COP8 "AT5G42970" species:3702... 128 2.8e-05 1
>TAIR|locus:2176100 [details] [associations]
symbol:RPN5B "AT5G64760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0030163 "protein catabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 EMBL:CP002688 Gene3D:1.10.10.10
InterPro:IPR011991 UniGene:At.27199 UniGene:At.71233 GO:GO:0030163
GO:GO:0000502 eggNOG:COG5071 KO:K03035 OMA:CDEKIPL EMBL:AY062093
EMBL:AY062113 EMBL:AY124872 EMBL:AY230833 IPI:IPI00543192
RefSeq:NP_568994.2 ProteinModelPortal:Q8VWK0 SMR:Q8VWK0
IntAct:Q8VWK0 STRING:Q8VWK0 PaxDb:Q8VWK0 PRIDE:Q8VWK0
EnsemblPlants:AT5G64760.1 GeneID:836597 KEGG:ath:AT5G64760
ProtClustDB:CLSN2687519 Genevestigator:Q8VWK0 Uniprot:Q8VWK0
Length = 442
Score = 1627 (577.8 bits), Expect = 2.9e-167, P = 2.9e-167
Identities = 309/364 (84%), Positives = 343/364 (94%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
YIDQT D++TRIELIKTLN+V+AGKIYVEIERARL K LAKIKEEQGLIAEAADLMQEVA
Sbjct: 78 YIDQTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQGLIAEAADLMQEVA 137
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VETFGAMAKTEKIAFILEQVRLCLD++D+VRAQILSRKI+PRVFDAD +KEKKKPKEG+N
Sbjct: 138 VETFGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINPRVFDADTTKEKKKPKEGEN 197
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
+VEEAPADIP+LL LKRIYYELMIRYYSHNN+Y+EICR YKAIY+IP +KE+P QW+PVL
Sbjct: 198 MVEEAPADIPTLLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQWIPVL 257
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
RKICW+L LAPHDPMQSSLLN+TLEDK LSEIP+F++LLKQ+VTMEVIQWTSLWN YKDE
Sbjct: 258 RKICWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDE 317
Query: 270 FENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLS 329
FENE NM+GGSLG KA EDL+ RIIEHNILVVSKYYSRIT KRLAELLCL+ +EAEKHLS
Sbjct: 318 FENEKNMIGGSLGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLS 377
Query: 330 DMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 389
+MVVSKAL+AKIDRP GI+CFQ+ KDSN+ILNSWA NLEKLLDLVEKSCHQIHKETMVHK
Sbjct: 378 EMVVSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSCHQIHKETMVHK 437
Query: 390 TALK 393
AL+
Sbjct: 438 VALR 441
>TAIR|locus:2178138 [details] [associations]
symbol:EMB2107 "AT5G09900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007275 "multicellular
organismal development" evidence=IMP] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0046686
"response to cadmium ion" evidence=RCA] [GO:0051510 "regulation of
unidimensional cell growth" evidence=RCA] [GO:0051788 "response to
misfolded protein" evidence=RCA] [GO:0080129 "proteasome core
complex assembly" evidence=RCA] GO:GO:0007275 GO:GO:0005829
GO:GO:0009506 GO:GO:0005634 EMBL:CP002688 EMBL:AB016893
GO:GO:0000502 eggNOG:COG5071 HOGENOM:HOG000194265 KO:K03035
IPI:IPI00891946 RefSeq:NP_001119202.1 UniGene:At.20339
ProteinModelPortal:B3H6B0 STRING:B3H6B0 PaxDb:B3H6B0 PRIDE:B3H6B0
EnsemblPlants:AT5G09900.3 GeneID:830850 KEGG:ath:AT5G09900
TAIR:At5g09900 OMA:ANNDTIR PhylomeDB:B3H6B0 Genevestigator:B3H6B0
Uniprot:B3H6B0
Length = 462
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 231/267 (86%), Positives = 253/267 (94%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
YIDQTPD++TRIELIKTLN+VSAGKIYVEIERARL KKLAKIKEEQG IAEAADLMQEVA
Sbjct: 78 YIDQTPDIETRIELIKTLNNVSAGKIYVEIERARLTKKLAKIKEEQGQIAEAADLMQEVA 137
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VETFGAMAKTEKIAFILEQVRLCLDRQD+VRAQILSRKI+PRVFDAD K+KKKPKEGDN
Sbjct: 138 VETFGAMAKTEKIAFILEQVRLCLDRQDFVRAQILSRKINPRVFDADTKKDKKKPKEGDN 197
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
+VEEAPADIP+LLELKRIYYELMIRYYSHNN+Y+EICR YKAIY+IP +KE P QW+PVL
Sbjct: 198 MVEEAPADIPTLLELKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKETPEQWIPVL 257
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
RKICW+LVLAPHDPMQSSLLN+TLEDKNLSEIP+F++LLKQ+VTMEVIQWTSLWN YKDE
Sbjct: 258 RKICWFLVLAPHDPMQSSLLNATLEDKNLSEIPDFKMLLKQVVTMEVIQWTSLWNKYKDE 317
Query: 270 FENETNMLGGSLGAKAAEDLRQRIIEH 296
FE E +M+GGSLG KA EDL+ RIIEH
Sbjct: 318 FEKEKSMIGGSLGDKAGEDLKLRIIEH 344
>DICTYBASE|DDB_G0281051 [details] [associations]
symbol:psmD12 "26S proteasome non-ATPase regulatory
subunit 12" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0281051 GenomeReviews:CM000152_GR EMBL:AAFI02000040
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 eggNOG:COG5071
GO:GO:0005838 KO:K03035 OMA:WDALNEN RefSeq:XP_640786.1
ProteinModelPortal:Q54UJ0 STRING:Q54UJ0 PRIDE:Q54UJ0
EnsemblProtists:DDB0232995 GeneID:8622839 KEGG:ddi:DDB_G0281051
ProtClustDB:CLSZ2729043 Uniprot:Q54UJ0
Length = 447
Score = 529 (191.3 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 104/227 (45%), Positives = 152/227 (66%)
Query: 163 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHD 222
+LK Y++ MIRY+SH+ +Y+EI RCY +IY+ P +++D Q + L+ IC Y++L+
Sbjct: 222 DLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSVEKDTPQLLQTLKYICIYVILSASS 281
Query: 223 PMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLG 282
QS LLN E K L++I N++ LL Q T+E+I+W++ + K E +++T
Sbjct: 282 NEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQTVF---KTE 338
Query: 283 AKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342
A EDLR+R+IEHNI V+S YY +I+ RLAELL LS+ E+EK +SD+V +K + AKID
Sbjct: 339 PNAWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKID 398
Query: 343 RPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 389
RP GI F D N +LN+WA N+ LLDLVEK+ H + +E M+HK
Sbjct: 399 RPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
Score = 291 (107.5 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 52/113 (46%), Positives = 84/113 (74%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++
Sbjct: 112 YVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQ 171
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142
VET+G M K EKI F ++Q+R+C++ +D++RAQ++ K++ + D +++ K
Sbjct: 172 VETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224
>ZFIN|ZDB-GENE-030131-617 [details] [associations]
symbol:psmd12 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 12" species:7955 "Danio rerio" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-617 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GeneTree:ENSGT00530000063471
CTD:5718 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:CR759902
EMBL:BC042325 IPI:IPI00511230 RefSeq:NP_963872.1 UniGene:Dr.51730
STRING:Q8AW07 Ensembl:ENSDART00000126186 GeneID:321898
KEGG:dre:321898 InParanoid:Q8AW07 NextBio:20807575 Uniprot:Q8AW07
Length = 456
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 166/366 (45%), Positives = 235/366 (64%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+D DL ++ LI TL +V+AGKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVDAMTDLSIKLRLIDTLRTVTAGKIYVEIERARLTKTLAHIKEQSGDVKEAAAILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K EK FILEQ+RLC+ +DY+R QI+S+KI+ + F +EG
Sbjct: 171 VETYGSMEKKEKAEFILEQMRLCIAVKDYIRTQIISKKINTKFFQ----------EEG-- 218
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
EE L+LK YY LMI+ H YL IC+ Y+AIY+ P I ED ++W L
Sbjct: 219 -TEE--------LKLK--YYNLMIQVDLHEGSYLSICKHYRAIYDTPCILEDSSKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
+ + Y++LAP+D QS L++ DK L EIP +R LLKQ TME+++W+S+ Y E
Sbjct: 268 KSVVLYVILAPYDNEQSDLVHRISTDKKLEEIPKYRDLLKQFTTMELMRWSSVVEDYGKE 327
Query: 270 FEN------ETNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
+T++ + G K +DL+ R++EHNI +++KYY+ IT+ R+A LL LS+
Sbjct: 328 LREGSMGTPDTDVFTCTEEGEKRWKDLKNRVVEHNIRIMAKYYTSITMGRMAALLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E+ LS++VV+K + AK+DR GI+ FQ KD ND+LN W+ L L+ LV K+ H I
Sbjct: 388 ESEEFLSNLVVNKTIYAKVDRLAGIINFQRPKDPNDLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|F1NPQ0 [details] [associations]
symbol:LOC100859465 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00530000063471
KO:K03035 OMA:WDALNEN EMBL:AADN02030024 IPI:IPI00589463
RefSeq:XP_003642387.1 Ensembl:ENSGALT00000005864 GeneID:100859465
KEGG:gga:100859465 Uniprot:F1NPQ0
Length = 456
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 161/366 (43%), Positives = 235/366 (64%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y++ DL ++ LI TL +V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEDITDLPVKLRLIDTLRTVTEGKIYVEIERARLTKTLATIKEQNGEVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
+ + Y++L+P+D QS L++ DK L EIP ++ LLK TME+++WT+L Y E
Sbjct: 268 KSVVLYVILSPYDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWTALVEEYGKE 327
Query: 270 FEN------ETNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
T++ G + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LREGSLDSPATDVFGCTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E+ LS++VV+K + AK+DR GI+ FQ KD N+ILN W+ L L+ LV K+ H I
Sbjct: 388 ESEEFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNILNDWSHKLNSLMALVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|O00232 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9606 "Homo sapiens" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0051436
EMBL:CH471099 GO:GO:0000216 GO:GO:0000209 GO:GO:0000084
GO:GO:0031145 GO:GO:0051437 GO:GO:0006521 Reactome:REACT_383
eggNOG:COG5071 GO:GO:0005838 CTD:5718 HOGENOM:HOG000194265
HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN EMBL:AB003103
EMBL:AK091198 EMBL:AK222679 EMBL:AC110921 EMBL:BC019062
EMBL:BC065826 IPI:IPI00185374 IPI:IPI00335069 PIR:PC6501
RefSeq:NP_002807.1 RefSeq:NP_777360.1 UniGene:Hs.592689
ProteinModelPortal:O00232 SMR:O00232 DIP:DIP-27549N IntAct:O00232
MINT:MINT-5003729 STRING:O00232 PhosphoSite:O00232 PaxDb:O00232
PeptideAtlas:O00232 PRIDE:O00232 DNASU:5718 Ensembl:ENST00000356126
Ensembl:ENST00000357146 GeneID:5718 KEGG:hsa:5718 UCSC:uc002jfy.3
GeneCards:GC17M065334 HGNC:HGNC:9557 HPA:HPA023119 MIM:604450
neXtProt:NX_O00232 PharmGKB:PA33903 InParanoid:O00232
OrthoDB:EOG46DM2P PhylomeDB:O00232 GenomeRNAi:5718 NextBio:22216
ArrayExpress:O00232 Bgee:O00232 CleanEx:HS_PSMD12
Genevestigator:O00232 GermOnline:ENSG00000197170 Uniprot:O00232
Length = 456
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 161/366 (43%), Positives = 233/366 (63%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY--- 266
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGME 327
Query: 267 --KDEFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
K E+ + GS G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|Q5RBI3 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9601 "Pongo abelii" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0022624
CTD:5718 HOVERGEN:HBG053739 KO:K03035 EMBL:CR858665
RefSeq:NP_001125501.1 UniGene:Pab.487 ProteinModelPortal:Q5RBI3
PRIDE:Q5RBI3 GeneID:100172410 KEGG:pon:100172410 InParanoid:Q5RBI3
Uniprot:Q5RBI3
Length = 456
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 161/366 (43%), Positives = 233/366 (63%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY--- 266
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGME 327
Query: 267 --KDEFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
K E+ + GS G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|F1RSM2 [details] [associations]
symbol:PSMD12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00530000063471 KO:K03035
OMA:WDALNEN EMBL:CU466377 RefSeq:XP_003483009.1
Ensembl:ENSSSCT00000018803 GeneID:100524394 KEGG:ssc:100524394
Uniprot:F1RSM2
Length = 456
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 161/366 (43%), Positives = 235/366 (64%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY--- 266
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGME 327
Query: 267 --KDEFENE-TNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
K E+ T++ G + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|Q2KJ25 [details] [associations]
symbol:PSMD12 "26S proteasome non-ATPase regulatory subunit
12" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0022624
EMBL:BC105555 IPI:IPI00702341 RefSeq:NP_001039893.1
UniGene:Bt.59590 ProteinModelPortal:Q2KJ25 STRING:Q2KJ25
PRIDE:Q2KJ25 Ensembl:ENSBTAT00000003145 GeneID:538204
KEGG:bta:538204 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN NextBio:20877306 Uniprot:Q2KJ25
Length = 456
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 161/366 (43%), Positives = 235/366 (64%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTY--- 266
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGME 327
Query: 267 --KDEFENE-TNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
K E+ T++ G + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>RGD|1359305 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0022624 "proteasome
accessory complex" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1359305
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502
GeneTree:ENSGT00530000063471 eggNOG:COG5071 CTD:5718
HOGENOM:HOG000194265 HOVERGEN:HBG053739 KO:K03035 OMA:WDALNEN
OrthoDB:EOG46DM2P EMBL:BC083758 IPI:IPI00198978
RefSeq:NP_001005875.1 UniGene:Rn.15873 IntAct:Q5XIC6 STRING:Q5XIC6
Ensembl:ENSRNOT00000004283 GeneID:287772 KEGG:rno:287772
UCSC:RGD:1359305 InParanoid:Q5XIC6 NextBio:626983
Genevestigator:Q5XIC6 Uniprot:Q5XIC6
Length = 456
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 158/366 (43%), Positives = 232/366 (63%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + + EK
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE-NTEK-------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y E
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVE 327
Query: 270 FEN------ETNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
T++ + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSSETPATDVFSSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR G++ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>MGI|MGI:1914247 [details] [associations]
symbol:Psmd12 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 12" species:10090 "Mus musculus" [GO:0000502
"proteasome complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0022624 "proteasome accessory complex"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1914247 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CH466558
GeneTree:ENSGT00530000063471 eggNOG:COG5071 EMBL:AL645687
GO:GO:0022624 CTD:5718 HOGENOM:HOG000194265 HOVERGEN:HBG053739
KO:K03035 OMA:WDALNEN OrthoDB:EOG46DM2P EMBL:AK007619 EMBL:AK007680
EMBL:AK009969 EMBL:AK017843 EMBL:AK151242 EMBL:AL683815
EMBL:BC004694 IPI:IPI00318982 RefSeq:NP_080170.1 UniGene:Mm.21667
ProteinModelPortal:Q9D8W5 SMR:Q9D8W5 IntAct:Q9D8W5 STRING:Q9D8W5
PhosphoSite:Q9D8W5 PaxDb:Q9D8W5 PRIDE:Q9D8W5
Ensembl:ENSMUST00000021063 GeneID:66997 KEGG:mmu:66997
InParanoid:Q9CQT4 NextBio:323262 Bgee:Q9D8W5 Genevestigator:Q9D8W5
GermOnline:ENSMUSG00000020720 Uniprot:Q9D8W5
Length = 456
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/366 (42%), Positives = 231/366 (63%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+
Sbjct: 111 YVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F + ++
Sbjct: 171 VETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEN--------- 221
Query: 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVL 209
L+LK YY LMI+ H YL IC+ Y+AIY+ P I+ + +W L
Sbjct: 222 ------------LKLK--YYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQAL 267
Query: 210 RKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDE 269
+ + Y++LAP D QS L++ DK L EIP ++ LLK TME+++W++L Y E
Sbjct: 268 KSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVE 327
Query: 270 FEN------ETNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322
T++ + G K +DL+ R++EHNI +++KYY+RIT+KR+A+LL LS+
Sbjct: 328 LRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVD 387
Query: 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
E+E LS++VV+K + AK+DR G++ FQ KD N++LN W+ L L+ LV K+ H I
Sbjct: 388 ESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTTHLIA 447
Query: 383 KETMVH 388
KE M+H
Sbjct: 448 KEEMIH 453
>UNIPROTKB|G5EHP6 [details] [associations]
symbol:MGCH7_ch7g327 "26S proteasome regulatory subunit
RPN5" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502 EMBL:CM000230
EMBL:CM001237 KO:K03035 RefSeq:XP_003721188.1
ProteinModelPortal:G5EHP6 EnsemblFungi:MGG_02608T0 GeneID:2682348
KEGG:mgr:MGG_02608 Uniprot:G5EHP6
Length = 507
Score = 443 (161.0 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 96/248 (38%), Positives = 154/248 (62%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
++D TP+L+T++ +I+TL +V+ GKI+VE+ERAR+ K L+ IK+EQG + A D++ E+
Sbjct: 102 FLDSTPNLETKLSVIETLRTVTEGKIFVEVERARVTKILSDIKKEQGDLKAATDILCELQ 161
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK-----EK--- 141
VETFG+M + EK F+L+QV LC++ D+ +A ILSRKIS + P K EK
Sbjct: 162 VETFGSMERREKTQFLLDQVALCIESGDWTQAGILSRKISTKYLARKPKKTPEQLEKEKQ 221
Query: 142 ---KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYI 198
KK K+GD VV E D + L+L+ YYE + H + YL++C+ Y+ + + +
Sbjct: 222 EREKKAKKGD-VVPEVEVDDTTDLKLR--YYEQQVILSQHEDKYLDVCKHYRQVLDTEAV 278
Query: 199 KEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQ 258
+EDPA+ VL+++ ++++L+PHD Q LL+ D S+I LLK E+++
Sbjct: 279 EEDPAKLRAVLQRVIYFIILSPHDNEQHDLLHRIHRDTRNSQIQLDAELLKLFTVHELMR 338
Query: 259 WTSLWNTY 266
W + T+
Sbjct: 339 WPEVAKTF 346
Score = 276 (102.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 53/104 (50%), Positives = 77/104 (74%)
Query: 284 KAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR 343
K EDLR+R+IEHN+ V+++YY+RI + RL ELL L+ +E EK++SD+V SK + AKIDR
Sbjct: 382 KRWEDLRKRVIEHNVRVIARYYTRIRMDRLTELLDLAEEETEKYISDLVTSKTVYAKIDR 441
Query: 344 PQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMV 387
P IV F +D++D+LN W+ N++ LL L+E+ H I KE M+
Sbjct: 442 PARIVNFAKPRDADDVLNEWSSNMKSLLGLLERIDHLITKEEMM 485
Score = 40 (19.1 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 29/130 (22%), Positives = 49/130 (37%)
Query: 134 DADPSKEKKKPKEGDNVVEEAP----ADIPSLLELKRIYYELMIRYYSHNNDYLEICRCY 189
DA EK KE D ++ EA +DI +E K E R S ++
Sbjct: 3 DAAFKPEKDFSKEADKLIPEAEKLAKSDIQGAIE-KLSVLEKQARQAS------DLATTS 55
Query: 190 KAIYEIPYIKEDPAQWMPVLRKICWYLVLAP-HDPMQSSLLNSTLEDKN-LSEIPNFRLL 247
+ + I I +D W + ++ LVL+ H ++ ++ L PN
Sbjct: 56 RVLVAIVTICKDEGDWSLLNDQV---LVLSKKHSQLKQAITKMVQTVVTFLDSTPNLETK 112
Query: 248 LKQLVTMEVI 257
L + T+ +
Sbjct: 113 LSVIETLRTV 122
>ASPGD|ASPL0000076235 [details] [associations]
symbol:AN4775 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0043248
"proteasome assembly" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031144 "proteasome localization" evidence=IEA] [GO:0010388
"cullin deneddylation" evidence=IEA] [GO:0008541 "proteasome
regulatory particle, lid subcomplex" evidence=IEA] [GO:0034399
"nuclear periphery" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0034515 "proteasome storage granule" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 EMBL:BN001303 EMBL:AACD01000081
eggNOG:COG5071 HOGENOM:HOG000194265 KO:K03035 OrthoDB:EOG41G6CN
RefSeq:XP_662379.1 ProteinModelPortal:Q5B3V5 STRING:Q5B3V5
EnsemblFungi:CADANIAT00005647 GeneID:2872576 KEGG:ani:AN4775.2
OMA:ILANHDY Uniprot:Q5B3V5
Length = 487
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 145/374 (38%), Positives = 238/374 (63%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
++D+TP+++T++ +I+TL +V+ GKI+VE+ERAR+ + L++IK+ QG + AAD++ E+
Sbjct: 101 FLDETPNMETKLSVIQTLRTVTEGKIFVEVERARVTRILSQIKKSQGDLNAAADILCELQ 160
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE-------KK 142
VETFG+M + EK FILEQV LC++R D+ +A +LSRKI+ R F P K KK
Sbjct: 161 VETFGSMTRREKTEFILEQVALCIERGDWTQATVLSRKINKRYFARKPKKSAEEIEKLKK 220
Query: 143 KPKEGDNV--VEEAPADIPS-LLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIK 199
+ +E + +EAP ++ + +LK YYE I +H+ YL++C+ Y+ + + ++
Sbjct: 221 EAEEREKTRAPDEAPMEVDDDVTDLKLRYYEQQIILANHDYKYLDVCKHYREVLDTDSVQ 280
Query: 200 EDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQW 259
E+P Q VL +I +Y+VL+P+D QS LL+ +D LS +P L+K E+++W
Sbjct: 281 ENPEQLRAVLARIVYYIVLSPYDNEQSDLLHRIQQDTRLSAVPVESRLVKLFTVPELMRW 340
Query: 260 TSLWNTY------KDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRL 313
+ + D F + + + +DLR+R+IEHN+ VV+KYY+RI + RL
Sbjct: 341 PIVAEQFGPHLCNTDVFSPKPSQSAEDRPYRRWQDLRKRVIEHNVRVVAKYYTRIEMGRL 400
Query: 314 AELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDL 373
+LL L+ +E EK++S++V SK + AKIDRP +V F +D++D+LN W+ ++ LL L
Sbjct: 401 TQLLDLTEEETEKYISELVTSKTIYAKIDRPARLVNFAKPRDADDVLNEWSSDMRSLLGL 460
Query: 374 VEKSCHQIHKETMV 387
+E+ H I KE M+
Sbjct: 461 LERIDHLITKEEMM 474
>SGD|S000002306 [details] [associations]
symbol:RPN5 "Subunit of the CSN and 26S proteasome lid
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0010388 "cullin deneddylation" evidence=IMP] [GO:0008180
"signalosome" evidence=IDA] [GO:0034515 "proteasome storage
granule" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IEA;IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
SGD:S000002306 EMBL:BK006938 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008541 GO:GO:0006511 GO:GO:0008180 EMBL:X97751 GO:GO:0010388
GeneTree:ENSGT00530000063471 eggNOG:COG5071 GO:GO:0034515 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000194265 KO:K03035 OMA:WDALNEN
OrthoDB:EOG41G6CN EMBL:Z74195 PIR:S67695 RefSeq:NP_010134.1
ProteinModelPortal:Q12250 SMR:Q12250 DIP:DIP-1578N IntAct:Q12250
MINT:MINT-391026 STRING:Q12250 PaxDb:Q12250 PeptideAtlas:Q12250
EnsemblFungi:YDL147W GeneID:851408 KEGG:sce:YDL147W NextBio:968585
Genevestigator:Q12250 GermOnline:YDL147W Uniprot:Q12250
Length = 445
Score = 440 (159.9 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 87/230 (37%), Positives = 140/230 (60%)
Query: 159 PSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVL 218
P LK YY L+++ H +YLE+ + + IY+ IK D A+W PVL I ++LVL
Sbjct: 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270
Query: 219 APHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLG 278
+P+ +Q+ L++ D NL ++ + L+K T E+++W + TY+ + G
Sbjct: 271 SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFG 330
Query: 279 GSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338
G EDL++R+IEHN+ V+S+YYSRITL RL ELL L+ + E ++SD+V +
Sbjct: 331 GEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIY 390
Query: 339 AKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 388
AK++RP IV F+ K+S+ +LN W+ N+++LL+ +E H I KE ++H
Sbjct: 391 AKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440
Score = 256 (95.2 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 54/108 (50%), Positives = 78/108 (72%)
Query: 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA 95
DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+
Sbjct: 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170
Query: 96 MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143
M +EKI FILEQ+ L + + DY +A +LSRKI + F +P E K
Sbjct: 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK-NPKYESLK 217
>FB|FBgn0028690 [details] [associations]
symbol:Rpn5 "Regulatory particle non-ATPase 5" species:7227
"Drosophila melanogaster" [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:AE014297 GO:GO:0006508 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004175 GO:GO:0008541 GeneTree:ENSGT00530000063471
eggNOG:COG5071 BRENDA:3.4.25.1 KO:K03035 OMA:WDALNEN EMBL:AF145315
EMBL:AY058339 RefSeq:NP_649588.1 UniGene:Dm.3426 SMR:Q9V3Z4
IntAct:Q9V3Z4 MINT:MINT-1656415 STRING:Q9V3Z4
EnsemblMetazoa:FBtr0078629 GeneID:40717 KEGG:dme:Dmel_CG1100
UCSC:CG1100-RA CTD:40717 FlyBase:FBgn0028690 InParanoid:Q9V3Z4
OrthoDB:EOG4HT77K GenomeRNAi:40717 NextBio:820233 Uniprot:Q9V3Z4
Length = 502
Score = 322 (118.4 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 66/116 (56%), Positives = 89/116 (76%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+D+TPD +T+++LI TL SV+ GKIYVEIERARL K LA IKE G +A AA +M+E+
Sbjct: 111 YVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILADIKEADGDVAGAATVMEELQ 170
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145
VET+G+M K EK+ ILEQ+RLCL ++DYV QI+++KIS + FD DP++ K K
Sbjct: 171 VETYGSMDKREKVELILEQMRLCLLKEDYVSTQIIAKKISIKFFD-DPAQHDLKLK 225
Score = 315 (115.9 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 73/210 (34%), Positives = 117/210 (55%)
Query: 190 KAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLK 249
+A EI +E + L Y VLAP D QS ++ ++K L E+P ++ +L+
Sbjct: 295 EAEVEIELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYKEILR 354
Query: 250 QLVTMEVIQWTSLWNTYKDEF-----ENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKY 304
++ E+I + +T+ +F ENE G K +L+ R+IEHNI +++ Y
Sbjct: 355 LFMSKELINF----DTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLIEHNIRIIAMY 410
Query: 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 364
YSR+ L R++ELL L E++LS + + + KIDRP GI+ F K ++DILN+WA
Sbjct: 411 YSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRPAGIIYFTQKKSASDILNNWA 470
Query: 365 MNLEKLLDLVEKSCHQIHKETMVHKTALKV 394
++ +L+ LV K+CH I+KE V+ V
Sbjct: 471 TDVNQLMSLVNKTCHLINKEECVYSVMCAV 500
Score = 56 (24.8 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 157 DIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196
D P+ +LK +Y LMI+ + + +L R Y+AI E P
Sbjct: 215 DDPAQHDLKLKFYYLMIQL-NRDTSFLNTSRHYQAIAEPP 253
>POMBASE|SPAC1420.03 [details] [associations]
symbol:rpn501 "19S proteasome regulatory subunit Rpn501"
species:4896 "Schizosaccharomyces pombe" [GO:0000502 "proteasome
complex" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IC] [GO:0031144
"proteasome localization" evidence=IGI] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0043248 "proteasome assembly" evidence=IGI] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c PomBase:SPAC1420.03
GO:GO:0005829 GO:GO:0007346 GO:GO:0005635 EMBL:CU329670
GO:GO:0043161 GenomeReviews:CU329670_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248 GO:GO:0034399
GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035 EMBL:U97377 PIR:T37666
RefSeq:NP_593278.1 RefSeq:NP_594776.1 ProteinModelPortal:Q9UTM3
STRING:Q9UTM3 PRIDE:Q9UTM3 EnsemblFungi:SPAC1420.03.1
EnsemblFungi:SPAPB8E5.02c.1 GeneID:2542907 GeneID:2543347
KEGG:spo:SPAC1420.03 KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL
OrthoDB:EOG41G6CN NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 385 (140.6 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 82/233 (35%), Positives = 131/233 (56%)
Query: 157 DIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYL 216
D+ SL +LK YYE IR H++ YL++C+ Y+A+Y+ ++EDP +W +L + +
Sbjct: 206 DVQSL-KLK--YYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENVVCFA 262
Query: 217 VLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE-NETN 275
+L P+D Q+ LL+ D L+ +P + L+K + E+++W + Y N
Sbjct: 263 LLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSNPVF 322
Query: 276 MLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSK 335
G K +LR+R+IEHNI VV+ YYSRI RL LL +S E E+ L D++
Sbjct: 323 AENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLIAKH 382
Query: 336 ALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 388
AKIDRP ++ F+ +++ + LN W N+ +LL +EK I KE M++
Sbjct: 383 HFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMN 435
Score = 246 (91.7 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 52/113 (46%), Positives = 76/113 (67%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++
Sbjct: 99 YLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEP 158
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142
VET+G+ EK+AFIL+QVRL L R DY A ++KI+ + F+ + + K
Sbjct: 159 VETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211
Score = 41 (19.5 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 31 IDQTPDLDTR---IELIKTLNSVSAGKIYVEIERARLIKK 67
++Q P++D EL K+LN+++ I +E+ + +K
Sbjct: 1 MEQKPEVDYSEKFAELQKSLNNLNTIDIDANLEKLLIFEK 40
>POMBASE|SPAPB8E5.02c [details] [associations]
symbol:rpn502 "19S proteasome regulatory subunit
Rpn502" species:4896 "Schizosaccharomyces pombe" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0031144 "proteasome localization" evidence=IGI]
[GO:0034399 "nuclear periphery" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IGI] [GO:0043248 "proteasome assembly" evidence=IGI]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 PomBase:SPAPB8E5.02c
PomBase:SPAC1420.03 GO:GO:0005829 GO:GO:0007346 GO:GO:0005635
EMBL:CU329670 GO:GO:0043161 GenomeReviews:CU329670_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000502 GO:GO:0043248
GO:GO:0034399 GO:GO:0031144 HOGENOM:HOG000194265 KO:K03035
EMBL:U97377 PIR:T37666 RefSeq:NP_593278.1 RefSeq:NP_594776.1
ProteinModelPortal:Q9UTM3 STRING:Q9UTM3 PRIDE:Q9UTM3
EnsemblFungi:SPAC1420.03.1 EnsemblFungi:SPAPB8E5.02c.1
GeneID:2542907 GeneID:2543347 KEGG:spo:SPAC1420.03
KEGG:spo:SPAPB8E5.02c OMA:CDEKIPL OrthoDB:EOG41G6CN
NextBio:20803946 Uniprot:Q9UTM3
Length = 443
Score = 385 (140.6 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 82/233 (35%), Positives = 131/233 (56%)
Query: 157 DIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYL 216
D+ SL +LK YYE IR H++ YL++C+ Y+A+Y+ ++EDP +W +L + +
Sbjct: 206 DVQSL-KLK--YYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENVVCFA 262
Query: 217 VLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE-NETN 275
+L P+D Q+ LL+ D L+ +P + L+K + E+++W + Y N
Sbjct: 263 LLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSNPVF 322
Query: 276 MLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSK 335
G K +LR+R+IEHNI VV+ YYSRI RL LL +S E E+ L D++
Sbjct: 323 AENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLIAKH 382
Query: 336 ALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 388
AKIDRP ++ F+ +++ + LN W N+ +LL +EK I KE M++
Sbjct: 383 HFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMN 435
Score = 246 (91.7 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 52/113 (46%), Positives = 76/113 (67%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I A +++
Sbjct: 99 YLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEP 158
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142
VET+G+ EK+AFIL+QVRL L R DY A ++KI+ + F+ + + K
Sbjct: 159 VETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211
Score = 41 (19.5 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 31 IDQTPDLDTR---IELIKTLNSVSAGKIYVEIERARLIKK 67
++Q P++D EL K+LN+++ I +E+ + +K
Sbjct: 1 MEQKPEVDYSEKFAELQKSLNNLNTIDIDANLEKLLIFEK 40
>WB|WBGene00004461 [details] [associations]
symbol:rpn-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0009792
GO:GO:0000003 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:FO081114
GeneTree:ENSGT00530000063471 eggNOG:COG5071 HOGENOM:HOG000194265
KO:K03035 OMA:WDALNEN PIR:F88130 RefSeq:NP_494835.1
ProteinModelPortal:Q19324 SMR:Q19324 STRING:Q19324 PaxDb:Q19324
EnsemblMetazoa:F10G7.8.1 EnsemblMetazoa:F10G7.8.2
EnsemblMetazoa:F10G7.8.3 GeneID:173807 KEGG:cel:CELE_F10G7.8
UCSC:F10G7.8.1 CTD:173807 WormBase:F10G7.8 InParanoid:Q19324
NextBio:881195 Uniprot:Q19324
Length = 490
Score = 350 (128.3 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 84/243 (34%), Positives = 133/243 (54%)
Query: 156 ADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWY 215
+D + LK YY+ MIR H+ +YL++CR ++ IYE IK D A+ LR Y
Sbjct: 239 SDEDEVQNLKLKYYDSMIRIGLHDGNYLDVCRHHREIYETKKIKADSAKATSHLRSAIVY 298
Query: 216 LVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWT-SLWNTYKDEFEN-- 272
+LAPH Q LLN + L +P+++++L + E+I + ++ Y+
Sbjct: 299 CLLAPHTNEQWDLLNRIAIQRELETVPDYKIILDLFINQELISFKGTIVAKYEKLLRRGT 358
Query: 273 ----ETNMLGGSL-GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKH 327
+T + S G K DL R+ EHN+ +++KYY++IT +RLAELL + E E
Sbjct: 359 TSSPDTGIFDKSTEGEKRWSDLHLRVGEHNMRMIAKYYTQITFERLAELLDFPVDEMESF 418
Query: 328 LSDMVVSKALV-AKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETM 386
+ +++V+ + AK+ RP IV ++ K + + L+ WA N+ KL D + K H I KE M
Sbjct: 419 VCNLIVTGQITGAKLHRPSRIVNLRLKKANVEQLDVWASNVHKLTDTLNKVSHLILKEQM 478
Query: 387 VHK 389
VHK
Sbjct: 479 VHK 481
Score = 254 (94.5 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 52/115 (45%), Positives = 79/115 (68%)
Query: 31 IDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 90
ID+ P D +++LI+TL +V+AGKIYVE+ERARL + K E +G + EAA ++ E+ V
Sbjct: 134 IDKMPTEDLKMKLIETLRTVTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQV 193
Query: 91 ETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145
ET+G+M EK+ ++LEQ+R L R D+VRA I+S+KI+ + F+ E + K
Sbjct: 194 ETYGSMEMREKVQYLLEQMRYSLVRNDFVRATIISKKINIKFFNKSDEDEVQNLK 248
>GENEDB_PFALCIPARUM|PF10_0174 [details] [associations]
symbol:PF10_0174 "26s proteasome subunit p55,
putative" species:5833 "Plasmodium falciparum" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0004175 GO:GO:0006511 EMBL:AE014185
GO:GO:0005838 HOGENOM:HOG000194265 KO:K03035 OMA:CDEKIPL
RefSeq:XP_001347459.1 ProteinModelPortal:Q8IJM0 PRIDE:Q8IJM0
EnsemblProtists:PF10_0174:mRNA GeneID:810332 KEGG:pfa:PF10_0174
EuPathDB:PlasmoDB:PF3D7_1017900 ProtClustDB:CLSZ2433075
Uniprot:Q8IJM0
Length = 467
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 83/235 (35%), Positives = 142/235 (60%)
Query: 163 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHD 222
+LK YY MI+YY + YL++ +CY+ + + D W+ ++ +L+L+P+D
Sbjct: 226 DLKLKYYMYMIQYYINEESYLDVAKCYEERFHTDIVLNDRNLWIDEMKCYIIFLILSPYD 285
Query: 223 PMQSSLLNST-LEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGS- 280
Q+ L N ++ K L EIP ++ L++ + ++IQW Y+ E N + S
Sbjct: 286 EQQNKLSNLLKMQKKKLKEIPIYQNLVQDFIEQDLIQWPL---PYQQELFNFF-IFDDSI 341
Query: 281 -LGAKAAEDL-RQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338
LG + +DL +++++ HNI V+S Y +I+L RLA+LL SI+++E LS++V +K +
Sbjct: 342 FLGGQNRKDLFKKKVMHHNIHVISNCYDQISLNRLAQLLNASIEDSENLLSELVSAKFIN 401
Query: 339 AKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALK 393
+KIDR GI+ F K+ ++LNSW++ + +LDL+E+S H I KE M+H+ LK
Sbjct: 402 SKIDRLNGIIKFGQKKNPENLLNSWSLQINDILDLLEESSHLIQKERMLHEAKLK 456
Score = 259 (96.2 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 63/174 (36%), Positives = 108/174 (62%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
+I+ + + ++ LI TL VS GKI+VE+ER+ +I+ L+KIKEE G I EAA+++Q+V
Sbjct: 116 WIEDIQNKEEKLNLINTLCLVSEGKIFVEVERSEVIRMLSKIKEEDGNIEEAANILQDVQ 175
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VETF +M K +K +ILEQ+RL L R+D++R ++SRKI+P + + + + K
Sbjct: 176 VETFISMNKRDKTEYILEQMRLVLLRKDFIRCHVISRKINPSLLNTEEFADLKLKYYMYM 235
Query: 150 VV----EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI--PY 197
+ EE+ D+ E +R + ++++ + N +++ +CY I+ I PY
Sbjct: 236 IQYYINEESYLDVAKCYE-ERFHTDIVL---NDRNLWIDEMKCY-IIFLILSPY 284
>UNIPROTKB|Q8IJM0 [details] [associations]
symbol:PF10_0174 "26s proteasome subunit p55, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004175 GO:GO:0006511 EMBL:AE014185 GO:GO:0005838
HOGENOM:HOG000194265 KO:K03035 OMA:CDEKIPL RefSeq:XP_001347459.1
ProteinModelPortal:Q8IJM0 PRIDE:Q8IJM0
EnsemblProtists:PF10_0174:mRNA GeneID:810332 KEGG:pfa:PF10_0174
EuPathDB:PlasmoDB:PF3D7_1017900 ProtClustDB:CLSZ2433075
Uniprot:Q8IJM0
Length = 467
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 83/235 (35%), Positives = 142/235 (60%)
Query: 163 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHD 222
+LK YY MI+YY + YL++ +CY+ + + D W+ ++ +L+L+P+D
Sbjct: 226 DLKLKYYMYMIQYYINEESYLDVAKCYEERFHTDIVLNDRNLWIDEMKCYIIFLILSPYD 285
Query: 223 PMQSSLLNST-LEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGS- 280
Q+ L N ++ K L EIP ++ L++ + ++IQW Y+ E N + S
Sbjct: 286 EQQNKLSNLLKMQKKKLKEIPIYQNLVQDFIEQDLIQWPL---PYQQELFNFF-IFDDSI 341
Query: 281 -LGAKAAEDL-RQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338
LG + +DL +++++ HNI V+S Y +I+L RLA+LL SI+++E LS++V +K +
Sbjct: 342 FLGGQNRKDLFKKKVMHHNIHVISNCYDQISLNRLAQLLNASIEDSENLLSELVSAKFIN 401
Query: 339 AKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALK 393
+KIDR GI+ F K+ ++LNSW++ + +LDL+E+S H I KE M+H+ LK
Sbjct: 402 SKIDRLNGIIKFGQKKNPENLLNSWSLQINDILDLLEESSHLIQKERMLHEAKLK 456
Score = 259 (96.2 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 63/174 (36%), Positives = 108/174 (62%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
+I+ + + ++ LI TL VS GKI+VE+ER+ +I+ L+KIKEE G I EAA+++Q+V
Sbjct: 116 WIEDIQNKEEKLNLINTLCLVSEGKIFVEVERSEVIRMLSKIKEEDGNIEEAANILQDVQ 175
Query: 90 VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149
VETF +M K +K +ILEQ+RL L R+D++R ++SRKI+P + + + + K
Sbjct: 176 VETFISMNKRDKTEYILEQMRLVLLRKDFIRCHVISRKINPSLLNTEEFADLKLKYYMYM 235
Query: 150 VV----EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI--PY 197
+ EE+ D+ E +R + ++++ + N +++ +CY I+ I PY
Sbjct: 236 IQYYINEESYLDVAKCYE-ERFHTDIVL---NDRNLWIDEMKCY-IIFLILSPY 284
>FB|FBgn0027054 [details] [associations]
symbol:CSN4 "COP9 complex homolog subunit 4" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome"
evidence=ISS;NAS;IMP;TAS;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001751 "compound eye photoreceptor cell
differentiation" evidence=IMP] [GO:0000338 "protein deneddylation"
evidence=IMP] [GO:0019781 "NEDD8 activating enzyme activity"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0005737 GO:GO:0007095
GO:GO:0050821 GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0044212 GO:GO:0046331 GO:GO:0008180 GO:GO:0001751
GO:GO:0032435 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG298640
KO:K12178 OMA:YNELSYR GeneTree:ENSGT00530000063471 EMBL:AF129082
EMBL:BT004883 RefSeq:NP_001163080.1 RefSeq:NP_477444.1
UniGene:Dm.3377 ProteinModelPortal:Q9V345 SMR:Q9V345 IntAct:Q9V345
MINT:MINT-279079 STRING:Q9V345 PaxDb:Q9V345 PRIDE:Q9V345
EnsemblMetazoa:FBtr0088859 EnsemblMetazoa:FBtr0301230 GeneID:35759
KEGG:dme:Dmel_CG8725 CTD:35759 FlyBase:FBgn0027054
InParanoid:Q9V345 OrthoDB:EOG441NSS PhylomeDB:Q9V345
GenomeRNAi:35759 NextBio:795082 Bgee:Q9V345 GermOnline:CG8725
Uniprot:Q9V345
Length = 407
Score = 155 (59.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 59/231 (25%), Positives = 103/231 (44%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDYL-EICRCYKAIYEIPYIK- 199
++ D+V E + SLL+ + EL + Y Y+ DY + + E+ Y K
Sbjct: 164 EDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRRKFIEAAQRYNELSYRKI 223
Query: 200 EDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQW 259
D + M L+K VLA +S +L + +D+ +P + +L K + +I+
Sbjct: 224 VDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYGILEKMYLE-RIIRR 282
Query: 260 TSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL 319
+ L EFE + + + L + + EHN+L SK Y+ IT + L LL +
Sbjct: 283 SEL-----QEFEALLQDHQKAATSDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDI 337
Query: 320 SIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+AEK S M+ + ID+ IV F+ + ++L W ++ L
Sbjct: 338 PAVKAEKIASQMITEGRMNGHIDQISAIVHFE----NRELLPQWDRQIQSL 384
Score = 63 (27.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 46 TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTE-KIAF 104
TL V+ I E + A + LA I E +AA ++ + +ET E K+
Sbjct: 95 TLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGT 154
Query: 105 ILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141
L+ RL L+ D V+A++ + S + A+ + E+
Sbjct: 155 YLKIARLYLEDNDSVQAELFINRAS--LLQAETNSEE 189
>RGD|1302952 [details] [associations]
symbol:Cops4 "COP9 signalosome subunit 4" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1302952
GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:BC079384 IPI:IPI00193349
RefSeq:NP_001004275.1 UniGene:Rn.7506 ProteinModelPortal:Q68FS2
SMR:Q68FS2 STRING:Q68FS2 PhosphoSite:Q68FS2 PRIDE:Q68FS2
Ensembl:ENSRNOT00000003046 GeneID:360915 KEGG:rno:360915
InParanoid:Q68FS2 NextBio:674575 Genevestigator:Q68FS2
GermOnline:ENSRNOG00000023650 Uniprot:Q68FS2
Length = 406
Score = 138 (53.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 61 (26.5 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
++ PD + TL V I E + A + ++LA I E++ AA ++ +
Sbjct: 72 HLPNLPDSTAKEVYHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIP 131
Query: 90 VETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 132 LETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|D6RAX7 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 OMA:YNELSYR HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966770 ProteinModelPortal:D6RAX7 SMR:D6RAX7
Ensembl:ENST00000511653 ArrayExpress:D6RAX7 Bgee:D6RAX7
Uniprot:D6RAX7
Length = 420
Score = 140 (54.3 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 56/226 (24%), Positives = 99/226 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSW 363
+ +AEK S M+ + ID+ GIV F+ + + I W
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETSGNHQSIFCLW 374
Score = 58 (25.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 130
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 131 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|Q3SZA0 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR EMBL:BC103017 IPI:IPI00700909
RefSeq:NP_001029866.1 UniGene:Bt.48928 ProteinModelPortal:Q3SZA0
SMR:Q3SZA0 STRING:Q3SZA0 PRIDE:Q3SZA0 Ensembl:ENSBTAT00000009128
GeneID:540223 KEGG:bta:540223 CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 InParanoid:Q3SZA0
OrthoDB:EOG4MGS7F NextBio:20878499 Uniprot:Q3SZA0
Length = 406
Score = 138 (53.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 58 (25.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 130
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 131 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|E2RT55 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008180 "signalosome" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12178 OMA:YNELSYR
GeneTree:ENSGT00530000063471 EMBL:AAEX03016729
RefSeq:XP_003640149.1 ProteinModelPortal:E2RT55 SMR:E2RT55
PRIDE:E2RT55 Ensembl:ENSCAFT00000014418 GeneID:100856586
KEGG:cfa:100856586 NextBio:20853792 Uniprot:E2RT55
Length = 406
Score = 138 (53.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 58 (25.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 130
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 131 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|Q9BT78 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0010388 "cullin
deneddylation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471057 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF100757 EMBL:AK001210 EMBL:AK024005
EMBL:BC004302 EMBL:BC009292 EMBL:BC093007 IPI:IPI00171844
RefSeq:NP_001244935.1 RefSeq:NP_057213.2 UniGene:Hs.190384
ProteinModelPortal:Q9BT78 SMR:Q9BT78 DIP:DIP-34516N IntAct:Q9BT78
MINT:MINT-1464138 STRING:Q9BT78 PhosphoSite:Q9BT78 DMDM:55976582
OGP:Q9BT78 REPRODUCTION-2DPAGE:IPI00171844 PaxDb:Q9BT78
PeptideAtlas:Q9BT78 PRIDE:Q9BT78 Ensembl:ENST00000264389
GeneID:51138 KEGG:hsa:51138 UCSC:uc003hoa.3 GeneCards:GC04P083955
HGNC:HGNC:16702 HPA:HPA036894 neXtProt:NX_Q9BT78 PharmGKB:PA26756
InParanoid:Q9BT78 PhylomeDB:Q9BT78 ChiTaRS:COPS4 GenomeRNAi:51138
NextBio:53990 ArrayExpress:Q9BT78 Bgee:Q9BT78 CleanEx:HS_COPS4
Genevestigator:Q9BT78 GermOnline:ENSG00000138663 Uniprot:Q9BT78
Length = 406
Score = 138 (53.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 58 (25.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 130
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 131 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|A7Y521 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:EF635914
RefSeq:NP_001098774.1 UniGene:Ssc.5658 ProteinModelPortal:A7Y521
SMR:A7Y521 STRING:A7Y521 PRIDE:A7Y521 Ensembl:ENSSSCT00000010121
GeneID:100125960 KEGG:ssc:100125960 Uniprot:A7Y521
Length = 406
Score = 138 (53.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 58 (25.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 130
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 131 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|Q5ZJV0 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008180 "signalosome" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:AADN02009032
EMBL:AJ720334 IPI:IPI00578250 RefSeq:NP_001006447.1
UniGene:Gga.6980 SMR:Q5ZJV0 IntAct:Q5ZJV0 STRING:Q5ZJV0
Ensembl:ENSGALT00000018144 GeneID:422594 KEGG:gga:422594
InParanoid:Q5ZJV0 NextBio:20825204 Uniprot:Q5ZJV0
Length = 411
Score = 138 (53.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 162 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSI 221
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 222 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 278
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 279 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 333
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 334 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 389
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 390 LEKI-SQTAPEWTA 402
Score = 58 (25.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 30 YIDQTPDLDTRIELIK-TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88
++ PD T E+ TL + I E + A + + LA I E++ AA ++ +
Sbjct: 77 HLPSLPD-STAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGI 135
Query: 89 AVETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 136 PLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 177
>WB|WBGene00000816 [details] [associations]
symbol:csn-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0030154 GO:GO:0002119 GO:GO:0040011
GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000910
GO:GO:0040035 GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 GeneTree:ENSGT00530000063471 EMBL:FO081813
RefSeq:NP_500034.1 ProteinModelPortal:Q9N359 SMR:Q9N359
DIP:DIP-27076N IntAct:Q9N359 MINT:MINT-1078091 STRING:Q9N359
PaxDb:Q9N359 PRIDE:Q9N359 EnsemblMetazoa:Y55F3AM.15.1
EnsemblMetazoa:Y55F3AM.15.2 GeneID:176927 KEGG:cel:CELE_Y55F3AM.15
UCSC:Y55F3AM.15 CTD:176927 WormBase:Y55F3AM.15 InParanoid:Q9N359
OMA:LCNKYLP NextBio:894618 Uniprot:Q9N359
Length = 412
Score = 154 (59.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 171 LMIRYYSHNNDYLEICRCYKAIYEIPYIKEDP-AQWMPVLRKICWYLVLAPHDPMQSSLL 229
L R ++E + Y YE+ ++ P + + L K ++LA P +S LL
Sbjct: 203 LQARVSDAKRRFVEAAQRY---YELSATEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLL 259
Query: 230 NSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGA-KAAED 288
+D+ + +F L+ K +T +VI +KDE E + L A + E
Sbjct: 260 TLIFKDERAPKCASFELIAKMYLT-KVI--------HKDELEEFEHQLQDHQKADEHGES 310
Query: 289 LRQRII-EHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347
+ + +I EHNI +S+ Y I+ K L +LL + + AE +M+ S+ L ID+ GI
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGI 370
Query: 348 VCFQVAKDSNDILNSWAMNLEKLLDLVEK 376
+ F+ DSN + W + L+ + K
Sbjct: 371 LHFE---DSNP-MRVWDSQILSTLEQINK 395
>UNIPROTKB|Q9N359 [details] [associations]
symbol:csn-4 "COP9 signalosome complex subunit 4"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0030154
GO:GO:0002119 GO:GO:0040011 GO:GO:0048477 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000910 GO:GO:0040035 GO:GO:0008180
eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
GeneTree:ENSGT00530000063471 EMBL:FO081813 RefSeq:NP_500034.1
ProteinModelPortal:Q9N359 SMR:Q9N359 DIP:DIP-27076N IntAct:Q9N359
MINT:MINT-1078091 STRING:Q9N359 PaxDb:Q9N359 PRIDE:Q9N359
EnsemblMetazoa:Y55F3AM.15.1 EnsemblMetazoa:Y55F3AM.15.2
GeneID:176927 KEGG:cel:CELE_Y55F3AM.15 UCSC:Y55F3AM.15 CTD:176927
WormBase:Y55F3AM.15 InParanoid:Q9N359 OMA:LCNKYLP NextBio:894618
Uniprot:Q9N359
Length = 412
Score = 154 (59.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 57/209 (27%), Positives = 97/209 (46%)
Query: 171 LMIRYYSHNNDYLEICRCYKAIYEIPYIKEDP-AQWMPVLRKICWYLVLAPHDPMQSSLL 229
L R ++E + Y YE+ ++ P + + L K ++LA P +S LL
Sbjct: 203 LQARVSDAKRRFVEAAQRY---YELSATEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLL 259
Query: 230 NSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGA-KAAED 288
+D+ + +F L+ K +T +VI +KDE E + L A + E
Sbjct: 260 TLIFKDERAPKCASFELIAKMYLT-KVI--------HKDELEEFEHQLQDHQKADEHGES 310
Query: 289 LRQRII-EHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347
+ + +I EHNI +S+ Y I+ K L +LL + + AE +M+ S+ L ID+ GI
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGI 370
Query: 348 VCFQVAKDSNDILNSWAMNLEKLLDLVEK 376
+ F+ DSN + W + L+ + K
Sbjct: 371 LHFE---DSNP-MRVWDSQILSTLEQINK 395
>MGI|MGI:1349414 [details] [associations]
symbol:Cops4 "COP9 (constitutive photomorphogenic) homolog,
subunit 4 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349414 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF071314 EMBL:AK009955 IPI:IPI00131871
RefSeq:NP_036131.1 UniGene:Mm.957 PDB:1UFM PDBsum:1UFM
ProteinModelPortal:O88544 SMR:O88544 IntAct:O88544 STRING:O88544
PhosphoSite:O88544 REPRODUCTION-2DPAGE:O88544 PaxDb:O88544
PRIDE:O88544 Ensembl:ENSMUST00000045993 GeneID:26891 KEGG:mmu:26891
InParanoid:O88544 EvolutionaryTrace:O88544 NextBio:304719
Bgee:O88544 Genevestigator:O88544 GermOnline:ENSMUSG00000035297
Uniprot:O88544
Length = 406
Score = 138 (53.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 62/254 (24%), Positives = 110/254 (43%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 57 (25.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 24/101 (23%), Positives = 44/101 (43%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
++ PD + TL + I E + A + + LA I E++ AA ++ +
Sbjct: 72 HLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIP 131
Query: 90 VETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 132 LETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRAS 172
>ZFIN|ZDB-GENE-030131-4317 [details] [associations]
symbol:cops4 "COP9 constitutive photomorphogenic
homolog subunit 4 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-030131-4317 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0008180
HOGENOM:HOG000158382 KO:K12178 OMA:YNELSYR CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F
EMBL:BC056527 EMBL:BC065617 IPI:IPI00488179 RefSeq:NP_991119.1
UniGene:Dr.77245 ProteinModelPortal:Q6P0H6 SMR:Q6P0H6 STRING:Q6P0H6
PRIDE:Q6P0H6 Ensembl:ENSDART00000064215 GeneID:325592
KEGG:dre:325592 eggNOG:COG5071 InParanoid:Q6P0H6 NextBio:20809371
Bgee:Q6P0H6 Uniprot:Q6P0H6
Length = 406
Score = 133 (51.9 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 62/254 (24%), Positives = 109/254 (42%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E + + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--TERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L V
Sbjct: 329 EIPPAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREPLPTWDKQIQSLCFQVNNL 384
Query: 378 CHQIHKETMVHKTA 391
+I +T TA
Sbjct: 385 LEKI-SQTAPEWTA 397
Score = 60 (26.2 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 30 YIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA 89
++ PD ++ TL + I E + A + + LA I E+Q AA ++ +
Sbjct: 72 HLPNLPDDIAKVVCHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIP 131
Query: 90 VETFGAMAKTE-KIAFILEQVRLCLDRQDYVRAQILSRKIS 129
+ET + K+ L+ RL L+ D V+A+ + S
Sbjct: 132 LETGQKQYNVDYKLDTYLKIARLYLEDDDPVQAEAYINRAS 172
>UNIPROTKB|D6RD63 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966084 ProteinModelPortal:D6RD63 SMR:D6RD63
Ensembl:ENST00000509317 ArrayExpress:D6RD63 Bgee:D6RD63
Uniprot:D6RD63
Length = 275
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 57/233 (24%), Positives = 103/233 (44%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 45 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 104
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 105 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 161
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 162 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 216
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F+ + + L +W ++ L
Sbjct: 217 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE----TREALPTWDKQIQSL 265
>DICTYBASE|DDB_G0293844 [details] [associations]
symbol:csn4 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0293844 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 KO:K12178 OMA:YNELSYR EMBL:DQ309432
EMBL:AAFI02000222 RefSeq:XP_628938.1 HSSP:O88544
ProteinModelPortal:Q54B82 SMR:Q54B82 STRING:Q54B82 PRIDE:Q54B82
EnsemblProtists:DDB0233102 GeneID:8629446 KEGG:ddi:DDB_G0293844
ProtClustDB:CLSZ2429214 Uniprot:Q54B82
Length = 393
Score = 127 (49.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L + +IEHN+L SK Y+ IT L LL + ++AEK S MV + L+ ID+ + ++
Sbjct: 296 LDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLI 355
Query: 349 CFQVAKDSNDILNSWAMNLEKL 370
F+ DS L W +E L
Sbjct: 356 QFENVGDS---LTQWDKKIEGL 374
Score = 50 (22.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 28/141 (19%), Positives = 62/141 (43%)
Query: 38 DTRIEL-IKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM 96
D ++EL I L+ + + E + + + LAK+ E Q E+A + + +++ +
Sbjct: 76 DIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLIAIPLDSSQRV 135
Query: 97 AKTE-KIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAP 155
E K+ ++ RL L+ ++ +A+ + S D K K ++
Sbjct: 136 ISPEYKVKIYVKIARLFLEEEESGQAETYINRAS------DSLHLVKNQK----LILAHK 185
Query: 156 ADIPSLLELKRIYYELMIRYY 176
+++ KR++ + +RYY
Sbjct: 186 TCFARIMDYKRMFLKASLRYY 206
>TAIR|locus:2159961 [details] [associations]
symbol:COP8 "AT5G42970" species:3702 "Arabidopsis
thaliana" [GO:0008180 "signalosome" evidence=IDA;TAS;IPI]
[GO:0009640 "photomorphogenesis" evidence=RCA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010388 "cullin deneddylation"
evidence=RCA;IMP] [GO:0010971 "positive regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043234
"protein complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000085
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009585 EMBL:AB008264
GO:GO:0008180 GO:GO:0010388 EMBL:AF176089 EMBL:AF395060
EMBL:AY087068 EMBL:AK176360 IPI:IPI00545035 PIR:T52302
RefSeq:NP_199111.1 UniGene:At.23570 ProteinModelPortal:Q8L5U0
SMR:Q8L5U0 IntAct:Q8L5U0 STRING:Q8L5U0 PaxDb:Q8L5U0 PRIDE:Q8L5U0
EnsemblPlants:AT5G42970.1 GeneID:834312 KEGG:ath:AT5G42970
GeneFarm:4497 TAIR:At5g42970 eggNOG:NOG298640 HOGENOM:HOG000158382
InParanoid:Q8L5U0 KO:K12178 OMA:YNELSYR PhylomeDB:Q8L5U0
ProtClustDB:CLSN2686637 Genevestigator:Q8L5U0 GermOnline:AT5G42970
Uniprot:Q8L5U0
Length = 397
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 52/210 (24%), Positives = 96/210 (45%)
Query: 161 LLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAP 220
+L++KR + E +RYY + +E + I + I E+ + C +LA
Sbjct: 186 ILDMKRKFLEAALRYYGISQ--IE----QRQIGD-EEIDENALEQALSAAVTC--TILAG 236
Query: 221 HDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGS 280
P +S +L + +D+ S++ + +L K V +E I + + +E S
Sbjct: 237 AGPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRRPEIDAFSEELRPHQK---AS 291
Query: 281 LGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340
L K+ L + +IEHN+L SK Y+ I L LL + ++AEK ++M+ +
Sbjct: 292 LPDKSTV-LDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGS 350
Query: 341 IDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
ID+ + ++ F+ D + L W + L
Sbjct: 351 IDQEEAVIHFE---DDVEELQQWDQQISGL 377
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 394 382 0.00091 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 613 (65 KB)
Total size of DFA: 246 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.78u 0.10s 33.88t Elapsed: 00:00:02
Total cpu time: 33.79u 0.10s 33.89t Elapsed: 00:00:02
Start: Fri May 10 12:20:20 2013 End: Fri May 10 12:20:22 2013