BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016147
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/371 (43%), Positives = 243/371 (65%), Gaps = 26/371 (7%)
Query: 19 AVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLI 78
A+ A+VQ++M Y+DQ D+ ++ELI TL ++S GKI+VE ERARL K L+KIKE++G I
Sbjct: 101 AIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDI 160
Query: 79 AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138
A AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++ K++ + D +
Sbjct: 161 ASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDEN 220
Query: 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYI 198
+ +LK Y++ MIRY+SH+ +Y+EI RCY +IY+ P +
Sbjct: 221 Q-----------------------DLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSV 257
Query: 199 KEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQ 258
++D Q + L+ IC Y++L+ QS LLN E K L++I N++ LL Q T+E+I+
Sbjct: 258 EKDTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIR 317
Query: 259 WTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLC 318
W++ + K E +++T A EDLR+R+IEHNI V+S YY +I+ RLAELL
Sbjct: 318 WSTFFELNKPELDSQTVF---KTEPNAWEDLRKRVIEHNIRVISTYYQKISTARLAELLD 374
Query: 319 LSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSC 378
LS+ E+EK +SD+V +K + AKIDRP GI F D N +LN+WA N+ LLDLVEK+
Sbjct: 375 LSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTN 434
Query: 379 HQIHKETMVHK 389
H + +E M+HK
Sbjct: 435 HLVQREFMLHK 445
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 238/378 (62%), Gaps = 30/378 (7%)
Query: 18 QAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGL 77
QAV MVQQ Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G
Sbjct: 99 QAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGD 158
Query: 78 IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137
+ EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F +
Sbjct: 159 VKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN 218
Query: 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPY 197
++ +LK YY LMI+ H YL IC+ Y+AIY+ P
Sbjct: 219 TE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPC 255
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
I+ + +W L+ + Y++LAP D QS L++ DK L EIP ++ LLK TME++
Sbjct: 256 IQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELM 315
Query: 258 QWTSLWNTY-----KDEFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITL 310
+W++L Y K E+ + GS G K +DL+ R++EHNI +++KYY+RIT+
Sbjct: 316 RWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITM 375
Query: 311 KRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L
Sbjct: 376 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
Query: 371 LDLVEKSCHQIHKETMVH 388
+ LV K+ H I KE M+H
Sbjct: 436 MSLVNKTTHLIAKEEMIH 453
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/378 (43%), Positives = 238/378 (62%), Gaps = 30/378 (7%)
Query: 18 QAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGL 77
QAV MVQQ Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G
Sbjct: 99 QAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGD 158
Query: 78 IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137
+ EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F +
Sbjct: 159 VKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN 218
Query: 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPY 197
++ +LK YY LMI+ H YL IC+ Y+AIY+ P
Sbjct: 219 TE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPC 255
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
I+ + +W L+ + Y++LAP D QS L++ DK L EIP ++ LLK TME++
Sbjct: 256 IQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELM 315
Query: 258 QWTSLWNTY-----KDEFENETNMLGGSL--GAKAAEDLRQRIIEHNILVVSKYYSRITL 310
+W++L Y K E+ + GS G K +DL+ R++EHNI +++KYY+RIT+
Sbjct: 316 RWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITM 375
Query: 311 KRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L
Sbjct: 376 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
Query: 371 LDLVEKSCHQIHKETMVH 388
+ LV K+ H I KE M+H
Sbjct: 436 MSLVNKTTHLIAKEEMIH 453
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 315 bits (807), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 238/378 (62%), Gaps = 30/378 (7%)
Query: 18 QAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGL 77
QAV MVQQ Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G
Sbjct: 99 QAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGD 158
Query: 78 IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137
+ EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F +
Sbjct: 159 VKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN 218
Query: 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPY 197
++ +LK YY LMI+ H YL IC+ Y+AIY+ P
Sbjct: 219 TE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPC 255
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
I+ + +W L+ + Y++LAP D QS L++ DK L EIP ++ LLK TME++
Sbjct: 256 IQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELM 315
Query: 258 QWTSLWNTYKDEFEN------ETNMLGGS-LGAKAAEDLRQRIIEHNILVVSKYYSRITL 310
+W++L Y E T++ G + G K +DL+ R++EHNI +++KYY+RIT+
Sbjct: 316 RWSTLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITM 375
Query: 311 KRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
KR+A+LL LS+ E+E LS++VV+K + AK+DR GI+ FQ KD N++LN W+ L L
Sbjct: 376 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSL 435
Query: 371 LDLVEKSCHQIHKETMVH 388
+ LV K+ H I KE M+H
Sbjct: 436 MSLVNKTTHLIAKEEMIH 453
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/378 (42%), Positives = 236/378 (62%), Gaps = 30/378 (7%)
Query: 18 QAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGL 77
QAV MVQQ Y+++ DL ++ LI TL V+ GKIYVEIERARL K LA IKE+ G
Sbjct: 99 QAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGD 158
Query: 78 IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137
+ EAA ++QE+ VET+G+M K E++ FILEQ+RLCL +DY+R QI+S+KI+ + F +
Sbjct: 159 VKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN 218
Query: 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPY 197
++ LK YY LMI+ H YL IC+ Y+AIY+ P
Sbjct: 219 TE-----------------------NLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPC 255
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
I+ + +W L+ + Y++LAP D QS L++ DK L EIP ++ LLK TME++
Sbjct: 256 IQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELM 315
Query: 258 QWTSLWNTYKDEFEN------ETNMLGGS-LGAKAAEDLRQRIIEHNILVVSKYYSRITL 310
+W++L Y E T++ + G K +DL+ R++EHNI +++KYY+RIT+
Sbjct: 316 RWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITM 375
Query: 311 KRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
KR+A+LL LS+ E+E LS++VV+K + AK+DR G++ FQ KD N++LN W+ L L
Sbjct: 376 KRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSL 435
Query: 371 LDLVEKSCHQIHKETMVH 388
+ LV K+ H I KE M+H
Sbjct: 436 MSLVNKTTHLIAKEEMIH 453
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3
Length = 445
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 227/372 (61%), Gaps = 25/372 (6%)
Query: 19 AVTAMVQQAMQYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQG 76
++ M+Q+ M+Y+ + DL+TRI +I+T+ V+ KI+VE+ERAR+ K L +IK+E+G
Sbjct: 92 SIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEG 151
Query: 77 LIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 136
I EAAD++ E+ VET+G+M +EKI FILEQ+ L + + DY +A +LSRKI + F
Sbjct: 152 KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--- 208
Query: 137 PSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196
K PK LK YY L+++ H +YLE+ + + IY+
Sbjct: 209 -----KNPKYES---------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248
Query: 197 YIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEV 256
IK D A+W PVL I ++LVL+P+ +Q+ L++ D NL ++ + L+K T E+
Sbjct: 249 AIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308
Query: 257 IQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAEL 316
++W + TY+ + GG EDL++R+IEHN+ V+S+YYSRITL RL EL
Sbjct: 309 MRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNEL 368
Query: 317 LCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEK 376
L L+ + E ++SD+V + AK++RP IV F+ K+S+ +LN W+ N+++LL+ +E
Sbjct: 369 LDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIET 428
Query: 377 SCHQIHKETMVH 388
H I KE ++H
Sbjct: 429 IGHLITKEEIMH 440
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1
Length = 443
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 212/372 (56%), Gaps = 24/372 (6%)
Query: 18 QAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGL 77
Q++T++VQ M Y+ DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG
Sbjct: 87 QSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGD 146
Query: 78 IAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137
I A +++ VET+G+ EK+AFIL+QVRL L R DY A ++KI+ + F+ +
Sbjct: 147 IKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKE- 205
Query: 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPY 197
D+ S LK YYE IR H++ YL++C+ Y+A+Y+
Sbjct: 206 -------------------DVQS---LKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAV 243
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
++EDP +W +L + + +L P+D Q+ LL+ D L+ +P + L+K + E++
Sbjct: 244 VQEDPEKWKEILENVVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELM 303
Query: 258 QWTSLWNTYKDEF-ENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAEL 316
+W + Y N G K +LR+R+IEHNI VV+ YYSRI RL L
Sbjct: 304 RWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVL 363
Query: 317 LCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEK 376
L +S E E+ L D++ AKIDRP ++ F+ +++ + LN W N+ +LL +EK
Sbjct: 364 LDMSPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGSNITELLGKLEK 423
Query: 377 SCHQIHKETMVH 388
I KE M++
Sbjct: 424 VRQLIIKEEMMN 435
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 46/339 (13%)
Query: 46 TLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTE-KIAF 104
TL V+ I E + A + LA I E +AA ++ + +ET E K+
Sbjct: 95 TLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVECKLGT 154
Query: 105 ILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLEL 164
L+ RL L+ D V+A++ + S + A+ + E EL
Sbjct: 155 YLKIARLYLEDNDSVQAELFINRAS--LLQAETNSE----------------------EL 190
Query: 165 KRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIK-EDPAQWMPVLRKICWYLVLAPHDP 223
+ +Y R + ++E + Y E+ Y K D + M L+K VLA
Sbjct: 191 QVLYKVCYARVLDYRRKFIEAAQRYN---ELSYRKIVDQGERMTALKKALICTVLASAGQ 247
Query: 224 MQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGA 283
+S +L + +D+ +P + +L K + +I+ + L EFE + +
Sbjct: 248 QRSRMLATLFKDERCQHLPAYGILEKMYLE-RIIRRSEL-----QEFEALLQDHQKAATS 301
Query: 284 KAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR 343
+ L + + EHN+L SK Y+ IT + L LL + +AEK S M+ + ID+
Sbjct: 302 DGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQ 361
Query: 344 PQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382
IV F ++ ++L W ++ L C+Q++
Sbjct: 362 ISAIVHF----ENRELLPQWDRQIQSL-------CYQVN 389
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 15/168 (8%)
Query: 193 YEIPYIKEDP-AQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQL 251
YE+ ++ P + + L K ++LA P +S LL +D+ + +F L+ K
Sbjct: 222 YELSATEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMY 281
Query: 252 VTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAED--LRQRIIEHNILVVSKYYSRIT 309
+T + +KDE E + L A + L+ I EHNI +S+ Y I+
Sbjct: 282 LTKVI---------HKDELEEFEHQLQDHQKADEHGESILKGVIQEHNITAISQLYINIS 332
Query: 310 LKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
K L +LL + + AE +M+ S+ L ID+ GI+ F+ DSN
Sbjct: 333 FKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGILHFE---DSN 377
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L + +IEHN+L SK Y+ IT L LL + ++AEK S MV + L+ ID+ + ++
Sbjct: 296 LDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLI 355
Query: 349 CFQVAKDSNDILNSWAMNLEKL 370
F+ DS L W +E L
Sbjct: 356 QFENVGDS---LTQWDKKIEGL 374
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E ++ + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--SERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSL 377
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 161 LLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAP 220
+L++KR + E +RYY I + + I E+ + C +LA
Sbjct: 186 ILDMKRKFLEAALRYYG-------ISQIEQRQIGDEEIDENALEQALSAAVTCT--ILAG 236
Query: 221 HDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGS 280
P +S +L + +D+ S++ + +L K V +E I + + +E S
Sbjct: 237 AGPQRSRVLATLYKDERCSKLKIYPILQK--VYLERILRRPEIDAFSEELRPHQK---AS 291
Query: 281 LGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340
L K+ L + +IEHN+L SK Y+ I L LL + ++AEK ++M+ +
Sbjct: 292 LPDKSTV-LDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGS 350
Query: 341 IDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
ID+ + ++ F+ D + L W + L
Sbjct: 351 IDQEEAVIHFE---DDVEELQQWDQQISGL 377
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 19/233 (8%)
Query: 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRY---YSHNNDY----LEICRCYKAIYEIPY 197
++ D V EA + SLL+ + +L I Y Y+ DY +E + Y +
Sbjct: 157 EDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSI 216
Query: 198 IKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVI 257
+ E + + L+ +LA +S +L + +D+ ++ + +L K + +I
Sbjct: 217 VHE--TERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLD-RII 273
Query: 258 QWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELL 317
+ L EF + A + L + +IEHN+L SK Y+ IT + L LL
Sbjct: 274 RGNQL-----QEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALL 328
Query: 318 CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL 370
+ +AEK S M+ + ID+ GIV F ++ + L +W ++ L
Sbjct: 329 EIPPAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREPLPTWDKQIQSL 377
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 149 NVVEEAPADIPSLLELKRIYYEL-MIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMP 207
N++ D P L ++++L R N +L + Y I P I E+ + +
Sbjct: 190 NIIHNVADDNPVL----NLHFKLSAARIQDSNRQFLAASQSYYEISLSPAIAEE--ERLH 243
Query: 208 VLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQ-----LVTMEVIQWTSL 262
L VLAP P +S +L +D+ + + F +L K L EV ++
Sbjct: 244 TLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLDRLLARAEVEKFAQG 303
Query: 263 WNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-SI 321
+ + T G ++ AKA ++EHN+L VS+ Y I L L L S
Sbjct: 304 LAPH----QLATTSDGSTVLAKA-------MVEHNLLAVSRLYRNIGFDALGSWLGLDSG 352
Query: 322 QEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 351
+AE+ + M+ L ID+ I+ F+
Sbjct: 353 NKAEEITARMIEQGRLAGSIDQIDRIIYFE 382
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 22/183 (12%)
Query: 217 VLAPHDPMQSSLLNSTLEDKNLSEIPNF----RLLLKQLVTMEVIQWTSLWNTYKDEFEN 272
VLAP P +S L + +D + + F ++ L +L+T E + F
Sbjct: 235 VLAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSA----------FAQ 284
Query: 273 ETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-------SIQEAE 325
+ A L + ++EHN++ SK Y I L +L L + ++AE
Sbjct: 285 RLAPHQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAE 344
Query: 326 KHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDI-LNSWAMNLEKLLDLVEKSCHQIHKE 384
+ + MV L ID+ GI+ F+ + + W ++ L + VE+ I +
Sbjct: 345 AYAARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNIAEG 404
Query: 385 TMV 387
+V
Sbjct: 405 HLV 407
>sp|A4R796|EIF3E_MAGO7 Eukaryotic translation initiation factor 3 subunit E OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=INT6 PE=3 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
K ++RI LKRL+E L L++ E EK + +++ L AKID +G V
Sbjct: 368 KIHARIDLKRLSEQLGLNVDEGEKWIVNLIRDTRLDAKIDFQEGTV 413
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDI--LNS 362
Y+R TL +++ + +S+ EA+ LS +++ K L AKID+ G V + A D + +
Sbjct: 370 YTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQESGTVVVESASDVERLRSVEE 429
Query: 363 WAMNLEKLLDLVEKSCHQIHKETMVHKTALKV 394
W +L L + K + + T + +
Sbjct: 430 WNESLRTLWQVTLKDGDGFKNDDVSQPTGIGM 461
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N+ + + +SR+ + +AEL+ L + EK LS M++ K +D QG
Sbjct: 322 LYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLD--QGAG 379
Query: 349 CFQVAKD 355
C + +D
Sbjct: 380 CLIIFED 386
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346
L ++E N+L V + +SR+ + +AEL+ LS + E LS M++ K +D+ G
Sbjct: 324 LYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSG 381
>sp|A8WWU0|EIF3C_CAEBR Eukaryotic translation initiation factor 3 subunit C
OS=Caenorhabditis briggsae GN=eif-3.C PE=3 SV=1
Length = 894
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+L S YS ++LK+LA L LS ++ +S M++ + L A +D P + + S
Sbjct: 744 LLTYSTVYSTVSLKKLASLFDLSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSR 803
Query: 358 DILNSWAMNLEKLLDLVEKSCHQI 381
L A+NL L + ++ QI
Sbjct: 804 --LQMLALNLSDKLQTLAENNEQI 825
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 38/60 (63%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ ++ ++EL+ LS + E+ LS M++ + +D+ +G++
Sbjct: 325 LYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILDQKFHGILDQGEGVL 384
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 261 SLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLS 320
+L N + + F + NM L + L ++ NI ++K + ++L+ +A + LS
Sbjct: 277 NLVNKHSETFTRDNNM---GLVKQCLSSLYKK----NIQRLTKTFLTLSLQDMASRVQLS 329
Query: 321 I-QEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM 365
QEAEK++ M+ + A I++ G+VCF D+ + N+ AM
Sbjct: 330 GPQEAEKYVLHMIEDGEIFASINQKDGMVCFH---DNPEKYNNPAM 372
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 293 IIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
++E N+ + + YSR+ + +AE + L + + EK LS M++ K +D+ +G++
Sbjct: 330 MLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVL 385
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|O02328|EIF3C_CAEEL Eukaryotic translation initiation factor 3 subunit C
OS=Caenorhabditis elegans GN=eif-3.C PE=3 SV=2
Length = 898
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+L S Y+ ++LK+LA+L LS ++ +S M++ + L A +D P + + S
Sbjct: 749 LLTYSTVYATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEPSR 808
Query: 358 DILNSWAMNLEKLLDLVEKSCHQI 381
L A+NL L + ++ QI
Sbjct: 809 --LQMLALNLSDKLQTLAENNEQI 830
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ ++ ++ L+ LS + E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVL 385
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 287 EDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346
ED R +E NIL +S+++ + LA+ LS ++ + ++DMV+ + L A ID+ +G
Sbjct: 289 EDGRH-FLETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEG 347
Query: 347 IVCF 350
+ F
Sbjct: 348 YITF 351
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+ S Y+ I++ LAE+ L +Q+ +S M++++ L+A +D P V ++ S
Sbjct: 759 LFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSR 818
Query: 358 DILNSWAMNL-EKLLDLVE 375
L + AM +K+ +LV+
Sbjct: 819 --LQALAMQFVDKVTNLVD 835
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 297 NILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 355
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFH---D 362
Query: 356 SNDILNSWAM 365
S + N+ AM
Sbjct: 363 SPEKYNNPAM 372
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 266 YKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-SIQEA 324
Y + F + NM L + A L +R NI ++K + ++L +A + L S EA
Sbjct: 298 YSEAFTRDNNM---GLAKQVATSLYKR----NIQRLTKTFLTLSLSDVASRVQLASAVEA 350
Query: 325 EKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM--NLEKLLDLVEKSCHQIH 382
E+++ +M+ S + A I++ G+V F KD + NS M N++ + V QI+
Sbjct: 351 ERYILNMIKSGEIYASINQKDGMVLF---KDDPEKYNSPEMFLNVQNNITHVLDQVRQIN 407
Query: 383 K 383
K
Sbjct: 408 K 408
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 297 NILVVSKYYSRITLKRLAELLCLSI-QEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 355
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKDGMVCFH---D 362
Query: 356 SNDILNSWAM 365
+ + N+ AM
Sbjct: 363 NPEKYNNPAM 372
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ + ++ L+ L E E+ LS M++ K +D+ +G++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMILDKKFHGILDQGEGVL 385
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 297 NILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD 355
NI ++K + ++L+ +A + LS QEAEK++ M+ + A I++ G+VCF D
Sbjct: 306 NIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFH---D 362
Query: 356 SNDILNSWAM 365
+ + N+ AM
Sbjct: 363 NPEKYNNPAM 372
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+ S Y+ I++ LA++ L +Q+ +S M++++ L+A +D P V ++ S
Sbjct: 760 LFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEELMASLDDPTETVVMHRSEPSR 819
Query: 358 DILNSWAMNL-EKLLDLVE 375
L + AM +K+ +LV+
Sbjct: 820 --LQALAMQFVDKVTNLVD 836
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 169 YELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSL 228
Y L+ YS + ++ E+ R K + + +K W+ V K+C ++ P++S
Sbjct: 512 YTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDD 571
Query: 229 LNSTLE 234
L TL+
Sbjct: 572 LYKTLD 577
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 283 AKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342
++ ++L ++I + +L + YS I + +AE + +S E + L +++ K + KID
Sbjct: 428 SRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKID 487
Query: 343 RPQGIVCFQVAKDSNDIL 360
+ +GIV +D N IL
Sbjct: 488 QNEGIVRILDERDENAIL 505
>sp|Q6PFQ2|EIF3C_DANRE Eukaryotic translation initiation factor 3 subunit C OS=Danio rerio
GN=eif3c PE=1 SV=1
Length = 926
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+ S Y I+++ L+E+ L + +S M++++ L+A +D+P V + ++
Sbjct: 791 LFTYSSVYDSISMETLSEMFELELPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTS 850
Query: 358 DILNSWAMNL-EKLLDLVEKS 377
L + A+ L EKL LVE +
Sbjct: 851 --LQNMALQLAEKLGGLVENN 869
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 289 LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
L ++E N++ V + +SR+ + +A L+ LS + E+ LS M++ K +D+ + ++
Sbjct: 326 LYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFHGILDQGEDVL 385
>sp|Q7S519|EIF3E_NEUCR Eukaryotic translation initiation factor 3 subunit E OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=int-6 PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
K ++RI+LK L+ L L+ +AEK + +++ L AKID +G V
Sbjct: 365 KIHARISLKDLSARLGLNNDDAEKWIVNLIRDTRLDAKIDYKEGTV 410
>sp|Q6P1V4|EIF3C_XENTR Eukaryotic translation initiation factor 3 subunit C OS=Xenopus
tropicalis GN=eif3c PE=2 SV=1
Length = 922
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+ S Y I + L ++ L I +S M++++ L+A +D+P V + S+
Sbjct: 793 LFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSS 852
Query: 358 DILNSWAMNL-EKLLDLVEKS 377
L + A+ L EKL +LVE +
Sbjct: 853 --LQNTALQLAEKLGNLVENN 871
>sp|Q4QR58|EIF3C_XENLA Eukaryotic translation initiation factor 3 subunit C OS=Xenopus
laevis GN=eif3c PE=2 SV=1
Length = 926
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 298 ILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSN 357
+ S Y I + L ++ L I +S M++++ L+A +D+P V + S+
Sbjct: 794 LFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMASLDQPTQTVVMHGTEPSS 853
Query: 358 DILNSWAMNL-EKLLDLVEKS 377
L + A+ L EKL +LVE +
Sbjct: 854 --LQNTALQLAEKLGNLVENN 872
>sp|Q2HBQ2|EIF3E_CHAGB Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=INT6 PE=3 SV=1
Length = 447
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348
K ++RI+LK L+ L L+ AEK + +++ L AKID +G V
Sbjct: 369 KIHARISLKDLSARLGLNADAAEKWIVNLIRDTRLDAKIDYKEGTV 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,151,156
Number of Sequences: 539616
Number of extensions: 5449750
Number of successful extensions: 16775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 16691
Number of HSP's gapped (non-prelim): 106
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)