Query 016147
Match_columns 394
No_of_seqs 167 out of 513
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 1.6E-85 5.6E-90 672.9 22.6 366 5-393 78-445 (445)
2 4b4t_R RPN7, 26S proteasome re 100.0 1.1E-42 3.8E-47 354.2 13.1 336 10-382 74-422 (429)
3 4b4t_Q 26S proteasome regulato 100.0 3.8E-35 1.3E-39 291.0 20.4 345 11-388 83-434 (434)
4 3txn_A 26S proteasome regulato 100.0 1.1E-31 3.7E-36 269.5 27.5 325 17-377 54-393 (394)
5 4b4t_O 26S proteasome regulato 99.9 6.6E-21 2.3E-25 191.7 20.4 284 66-380 80-390 (393)
6 1ufm_A COP9 complex subunit 4; 99.9 3.2E-22 1.1E-26 158.2 5.1 73 282-354 5-77 (84)
7 4b4t_S RPN3, 26S proteasome re 99.7 8.4E-18 2.9E-22 172.5 14.0 281 61-379 180-477 (523)
8 3t5x_A PCI domain-containing p 99.1 1.3E-09 4.5E-14 99.7 15.6 171 163-353 11-193 (203)
9 3t5v_B Nuclear mRNA export pro 98.7 1.8E-07 6E-12 95.3 15.3 238 76-353 140-429 (455)
10 3chm_A COP9 signalosome comple 97.7 0.00039 1.3E-08 61.4 12.1 129 209-354 26-158 (169)
11 4b0z_A RPN12, 26S proteasome r 97.6 0.0029 9.9E-08 58.4 16.5 208 108-352 13-228 (229)
12 3ro3_A PINS homolog, G-protein 96.6 0.11 3.6E-06 41.7 15.6 142 7-194 16-157 (164)
13 3ro3_A PINS homolog, G-protein 95.9 0.2 6.9E-06 39.9 13.5 112 59-194 6-117 (164)
14 3sf4_A G-protein-signaling mod 95.8 0.41 1.4E-05 44.9 17.0 111 61-195 226-336 (406)
15 3ro2_A PINS homolog, G-protein 95.4 0.41 1.4E-05 43.1 15.0 112 60-195 221-332 (338)
16 3ro2_A PINS homolog, G-protein 95.4 0.9 3.1E-05 40.8 17.2 68 63-130 184-251 (338)
17 3ulq_A Response regulator aspa 95.2 1.2 4.2E-05 42.1 18.4 142 7-195 110-253 (383)
18 1elr_A TPR2A-domain of HOP; HO 95.2 0.36 1.2E-05 37.1 12.2 107 60-195 2-108 (131)
19 3gw4_A Uncharacterized protein 95.0 1.4 4.7E-05 37.0 17.0 112 60-196 64-177 (203)
20 4a1s_A PINS, partner of inscut 95.0 0.49 1.7E-05 44.9 14.7 111 61-195 262-372 (411)
21 3sf4_A G-protein-signaling mod 94.9 1.2 4.3E-05 41.5 17.1 112 60-195 185-296 (406)
22 4ga2_A E3 SUMO-protein ligase 94.7 0.31 1.1E-05 40.4 11.1 93 67-195 2-94 (150)
23 1qqe_A Vesicular transport pro 94.6 2.6 9E-05 38.6 18.9 109 62-194 117-227 (292)
24 4a1s_A PINS, partner of inscut 94.6 1.3 4.6E-05 41.8 16.7 109 62-194 223-331 (411)
25 3gw4_A Uncharacterized protein 94.1 1.3 4.4E-05 37.2 14.0 111 61-194 25-135 (203)
26 2ifu_A Gamma-SNAP; membrane fu 93.8 3.3 0.00011 38.3 17.2 108 60-193 114-222 (307)
27 4gcn_A Protein STI-1; structur 93.7 1.2 4E-05 35.7 12.3 106 60-194 6-111 (127)
28 3q15_A PSP28, response regulat 93.7 4.8 0.00016 38.0 21.2 165 6-196 107-291 (378)
29 1elw_A TPR1-domain of HOP; HOP 93.5 1.3 4.3E-05 33.2 11.7 99 61-195 3-101 (118)
30 2qfc_A PLCR protein; TPR, HTH, 93.4 4.2 0.00014 37.0 17.1 113 59-194 112-224 (293)
31 4b4t_Q 26S proteasome regulato 93.3 0.79 2.7E-05 43.9 12.4 109 62-194 95-203 (434)
32 3vtx_A MAMA; tetratricopeptide 93.2 3.2 0.00011 34.4 15.9 99 61-195 4-102 (184)
33 3nf1_A KLC 1, kinesin light ch 93.1 2 6.9E-05 38.3 14.2 113 60-194 109-223 (311)
34 3uq3_A Heat shock protein STI1 93.1 3 0.0001 36.0 15.0 99 60-194 137-235 (258)
35 3mkr_A Coatomer subunit epsilo 93.0 2.8 9.6E-05 38.7 15.3 95 62-195 101-195 (291)
36 3edt_B KLC 2, kinesin light ch 93.0 2.2 7.6E-05 37.3 14.0 113 60-194 83-197 (283)
37 4ga2_A E3 SUMO-protein ligase 92.9 0.49 1.7E-05 39.2 9.0 95 60-190 29-123 (150)
38 1a17_A Serine/threonine protei 92.8 2.1 7E-05 34.4 12.7 100 60-195 11-110 (166)
39 3ulq_A Response regulator aspa 92.8 4 0.00014 38.5 16.5 112 60-195 182-293 (383)
40 3u3w_A Transcriptional activat 92.4 2.5 8.6E-05 38.6 14.1 138 33-194 42-183 (293)
41 2lni_A Stress-induced-phosphop 92.2 2 6.8E-05 33.0 11.4 97 62-194 16-112 (133)
42 3sz7_A HSC70 cochaperone (SGT) 92.1 2.5 8.6E-05 34.7 12.5 100 60-195 9-108 (164)
43 3mv2_B Coatomer subunit epsilo 92.0 0.8 2.7E-05 43.9 10.2 105 66-196 104-208 (310)
44 2dba_A Smooth muscle cell asso 91.9 3.4 0.00012 32.4 12.6 102 61-195 27-128 (148)
45 3upv_A Heat shock protein STI1 91.6 3.7 0.00013 31.8 12.5 98 61-194 3-100 (126)
46 3nf1_A KLC 1, kinesin light ch 91.5 0.99 3.4E-05 40.4 9.9 114 60-195 25-140 (311)
47 4gco_A Protein STI-1; structur 91.4 2.7 9.3E-05 33.5 11.5 103 56-195 7-110 (126)
48 3edt_B KLC 2, kinesin light ch 91.1 1.5 5.2E-05 38.3 10.6 114 60-195 41-156 (283)
49 3uq3_A Heat shock protein STI1 91.1 6.8 0.00023 33.6 18.2 129 63-195 39-168 (258)
50 2y4t_A DNAJ homolog subfamily 91.0 9.9 0.00034 36.0 17.1 108 62-195 211-324 (450)
51 3q49_B STIP1 homology and U bo 90.9 4.1 0.00014 31.7 12.1 97 62-194 9-105 (137)
52 3u4t_A TPR repeat-containing p 90.7 4.8 0.00016 35.3 13.6 98 65-195 6-103 (272)
53 2ifu_A Gamma-SNAP; membrane fu 90.7 10 0.00034 34.9 17.4 110 60-195 74-184 (307)
54 1na0_A Designed protein CTPR3; 90.4 4.4 0.00015 30.2 12.1 98 62-195 9-106 (125)
55 4i17_A Hypothetical protein; T 90.1 8.3 0.00029 33.1 14.5 102 64-194 44-145 (228)
56 2fbn_A 70 kDa peptidylprolyl i 90.0 4.2 0.00014 34.5 12.2 107 59-195 35-151 (198)
57 2e2e_A Formate-dependent nitri 89.8 7.3 0.00025 32.0 14.1 98 62-195 44-144 (177)
58 2ho1_A Type 4 fimbrial biogene 89.8 8.4 0.00029 33.2 14.3 98 61-194 36-133 (252)
59 3u3w_A Transcriptional activat 89.6 4.6 0.00016 36.7 12.9 110 62-194 115-224 (293)
60 2vyi_A SGTA protein; chaperone 89.3 5.6 0.00019 29.9 15.4 101 59-195 9-109 (131)
61 2xev_A YBGF; tetratricopeptide 89.3 4.2 0.00015 31.2 10.8 101 65-195 5-105 (129)
62 3rkv_A Putative peptidylprolyl 89.2 4.4 0.00015 33.1 11.4 105 60-194 9-125 (162)
63 3as5_A MAMA; tetratricopeptide 89.2 5.9 0.0002 31.8 12.1 62 63-130 77-138 (186)
64 2q7f_A YRRB protein; TPR, prot 89.0 9.9 0.00034 32.3 15.0 62 63-130 58-119 (243)
65 3q15_A PSP28, response regulat 88.9 9.1 0.00031 36.0 14.8 111 62-195 101-211 (378)
66 2vq2_A PILW, putative fimbrial 88.9 9.3 0.00032 31.9 15.8 98 61-194 7-105 (225)
67 2kck_A TPR repeat; tetratricop 88.7 4 0.00014 30.0 9.9 96 66-195 10-106 (112)
68 3ieg_A DNAJ homolog subfamily 88.6 13 0.00046 33.4 20.2 154 7-195 127-301 (359)
69 2qfc_A PLCR protein; TPR, HTH, 88.5 7.2 0.00025 35.4 13.3 110 61-194 74-183 (293)
70 3mkr_A Coatomer subunit epsilo 88.4 8.9 0.00031 35.2 14.0 100 62-195 130-229 (291)
71 2xcb_A PCRH, regulatory protei 88.3 8.4 0.00029 30.7 12.4 99 60-194 16-114 (142)
72 2fo7_A Synthetic consensus TPR 88.3 6.6 0.00022 29.5 12.7 96 64-195 3-98 (136)
73 2vgx_A Chaperone SYCD; alterna 88.3 8.4 0.00029 31.4 12.4 99 60-194 19-117 (148)
74 2fo7_A Synthetic consensus TPR 88.2 6.7 0.00023 29.4 12.0 95 64-194 37-131 (136)
75 1sfx_A Conserved hypothetical 88.0 7.3 0.00025 29.6 11.2 67 305-373 32-100 (109)
76 1wi9_A Protein C20ORF116 homol 87.8 0.88 3E-05 34.0 5.1 49 304-352 18-66 (72)
77 3ieg_A DNAJ homolog subfamily 87.7 15 0.00052 33.0 19.0 100 64-195 236-335 (359)
78 1a17_A Serine/threonine protei 87.5 8.5 0.00029 30.6 11.9 64 62-131 47-110 (166)
79 3as5_A MAMA; tetratricopeptide 87.2 10 0.00035 30.4 15.6 99 61-195 7-105 (186)
80 1ihg_A Cyclophilin 40; ppiase 86.9 7.2 0.00025 37.5 12.8 106 60-195 221-336 (370)
81 1p5q_A FKBP52, FK506-binding p 86.6 9.7 0.00033 35.8 13.3 108 58-195 143-259 (336)
82 2xpi_A Anaphase-promoting comp 86.3 27 0.00093 34.4 17.6 102 63-194 476-578 (597)
83 3hym_B Cell division cycle pro 86.1 18 0.00062 32.2 18.5 26 104-129 238-263 (330)
84 4gyw_A UDP-N-acetylglucosamine 86.1 18 0.00062 38.3 16.4 164 62-270 9-172 (723)
85 2y4t_A DNAJ homolog subfamily 85.5 24 0.00084 33.2 17.1 98 66-195 261-358 (450)
86 1rz4_A Eukaryotic translation 85.5 0.89 3E-05 41.6 5.0 58 288-352 133-191 (226)
87 1ub9_A Hypothetical protein PH 85.2 3.3 0.00011 31.4 7.7 67 306-374 29-98 (100)
88 3cv0_A Peroxisome targeting si 85.2 20 0.00068 31.8 15.7 97 62-194 172-268 (327)
89 4eqf_A PEX5-related protein; a 84.5 18 0.00061 33.3 13.9 99 63-195 178-276 (365)
90 4b4t_T 26S proteasome regulato 84.4 8.8 0.0003 35.9 11.6 154 166-330 59-223 (274)
91 2c2l_A CHIP, carboxy terminus 84.3 15 0.00052 33.3 13.1 97 62-194 4-100 (281)
92 3hym_B Cell division cycle pro 84.2 22 0.00076 31.5 17.7 103 66-195 163-265 (330)
93 2gw1_A Mitochondrial precursor 84.1 30 0.001 33.0 17.1 103 63-195 373-478 (514)
94 3fp2_A TPR repeat-containing p 83.9 23 0.00079 34.2 15.0 102 64-195 380-491 (537)
95 1xnf_A Lipoprotein NLPI; TPR, 83.8 15 0.0005 31.9 12.4 101 59-195 40-140 (275)
96 2gw1_A Mitochondrial precursor 83.1 13 0.00044 35.7 12.7 100 60-196 4-103 (514)
97 1hxi_A PEX5, peroxisome target 83.1 15 0.0005 28.7 11.7 93 66-194 21-113 (121)
98 1fch_A Peroxisomal targeting s 83.0 27 0.00093 31.7 16.8 97 62-194 217-313 (368)
99 4eqf_A PEX5-related protein; a 83.0 28 0.00096 31.9 19.0 106 62-195 133-242 (365)
100 1p5q_A FKBP52, FK506-binding p 82.9 31 0.001 32.2 15.0 107 6-131 153-259 (336)
101 1hh8_A P67PHOX, NCF-2, neutrop 82.9 12 0.00039 31.5 11.0 93 63-194 7-99 (213)
102 3gyz_A Chaperone protein IPGC; 82.9 19 0.00064 29.8 13.1 102 58-195 32-133 (151)
103 1kt0_A FKBP51, 51 kDa FK506-bi 82.4 15 0.00053 36.1 13.2 107 59-195 265-380 (457)
104 2ho1_A Type 4 fimbrial biogene 82.2 23 0.00079 30.3 18.8 98 63-194 72-169 (252)
105 1xn7_A Hypothetical protein YH 81.9 2.6 8.8E-05 31.9 5.5 36 302-337 11-46 (78)
106 1qgp_A Protein (double strande 81.6 3.9 0.00013 30.6 6.4 38 307-344 31-68 (77)
107 2q7f_A YRRB protein; TPR, prot 81.5 23 0.00079 29.9 17.4 63 62-130 91-153 (243)
108 3vtx_A MAMA; tetratricopeptide 81.1 21 0.00072 29.1 17.3 125 6-194 11-135 (184)
109 3ma5_A Tetratricopeptide repea 80.9 7.4 0.00025 29.3 8.1 64 62-131 7-70 (100)
110 1na3_A Designed protein CTPR2; 80.8 11 0.00039 26.6 8.8 65 61-131 8-72 (91)
111 1qqe_A Vesicular transport pro 80.5 33 0.0011 31.0 24.3 161 7-196 23-188 (292)
112 3qky_A Outer membrane assembly 79.6 31 0.0011 30.1 16.8 121 6-131 21-177 (261)
113 1r7j_A Conserved hypothetical 79.6 13 0.00045 28.7 9.1 52 295-352 11-62 (95)
114 1hh8_A P67PHOX, NCF-2, neutrop 79.5 19 0.00064 30.1 11.1 114 62-195 37-150 (213)
115 2k02_A Ferrous iron transport 79.4 2.8 9.6E-05 32.4 5.0 38 302-339 11-48 (87)
116 2xev_A YBGF; tetratricopeptide 79.3 12 0.00041 28.5 9.0 66 63-131 40-105 (129)
117 2vsy_A XCC0866; transferase, g 79.3 32 0.0011 34.3 14.5 98 62-195 23-120 (568)
118 1elr_A TPR2A-domain of HOP; HO 79.1 18 0.0006 27.0 12.9 69 63-131 39-108 (131)
119 4f3v_A ESX-1 secretion system 79.1 16 0.00055 34.2 11.2 102 60-196 100-201 (282)
120 3k9i_A BH0479 protein; putativ 78.9 11 0.00038 28.8 8.7 67 59-131 24-90 (117)
121 4gyw_A UDP-N-acetylglucosamine 78.3 73 0.0025 33.6 18.3 126 5-194 14-139 (723)
122 4abn_A Tetratricopeptide repea 78.2 54 0.0018 32.1 18.2 99 60-195 100-208 (474)
123 2kck_A TPR repeat; tetratricop 77.6 7.9 0.00027 28.2 7.2 64 64-131 42-106 (112)
124 2vyi_A SGTA protein; chaperone 77.5 12 0.00042 27.9 8.5 64 62-131 46-109 (131)
125 1qbj_A Protein (double-strande 77.4 5.5 0.00019 30.2 6.1 38 307-344 27-64 (81)
126 1xnf_A Lipoprotein NLPI; TPR, 76.9 6.4 0.00022 34.3 7.5 96 68-195 11-106 (275)
127 2l6j_A TPR repeat-containing p 76.3 13 0.00044 27.3 8.2 64 62-131 4-67 (111)
128 3u4t_A TPR repeat-containing p 76.2 37 0.0013 29.3 17.1 64 62-131 74-137 (272)
129 2vq2_A PILW, putative fimbrial 76.0 32 0.0011 28.4 19.6 17 6-22 14-30 (225)
130 2xpi_A Anaphase-promoting comp 75.9 63 0.0021 31.7 16.7 100 66-194 445-544 (597)
131 3cv0_A Peroxisome targeting si 75.0 22 0.00074 31.5 10.7 94 66-195 25-118 (327)
132 2kat_A Uncharacterized protein 74.9 15 0.00052 27.7 8.4 64 62-131 19-82 (115)
133 1na0_A Designed protein CTPR3; 74.8 16 0.00056 26.9 8.5 63 63-131 44-106 (125)
134 2dba_A Smooth muscle cell asso 74.8 17 0.00057 28.1 8.8 65 61-131 64-128 (148)
135 3n71_A Histone lysine methyltr 74.0 22 0.00075 35.8 11.4 107 66-194 313-421 (490)
136 2yhc_A BAMD, UPF0169 lipoprote 73.8 42 0.0014 28.8 12.0 65 64-131 6-70 (225)
137 2oqg_A Possible transcriptiona 73.6 27 0.00094 26.9 9.7 37 306-342 33-69 (114)
138 1w3b_A UDP-N-acetylglucosamine 73.5 57 0.0019 30.1 17.6 92 67-194 4-95 (388)
139 1ku9_A Hypothetical protein MJ 72.8 15 0.00052 29.4 8.3 42 306-347 40-81 (152)
140 2heo_A Z-DNA binding protein 1 72.1 12 0.00041 26.9 6.6 34 306-339 24-57 (67)
141 1hz4_A MALT regulatory protein 71.9 61 0.0021 29.7 17.0 109 62-194 135-243 (373)
142 1z7u_A Hypothetical protein EF 71.9 23 0.0008 27.7 9.0 41 306-346 34-75 (112)
143 2fbh_A Transcriptional regulat 71.6 36 0.0012 27.0 10.9 49 303-351 48-99 (146)
144 3r0a_A Putative transcriptiona 70.4 39 0.0013 27.0 10.6 35 308-342 43-77 (123)
145 1jgs_A Multiple antibiotic res 70.1 34 0.0011 27.0 9.8 62 305-368 46-110 (138)
146 3urz_A Uncharacterized protein 69.9 50 0.0017 28.0 13.3 95 65-195 7-117 (208)
147 3qwp_A SET and MYND domain-con 69.8 49 0.0017 32.5 12.7 71 60-131 327-400 (429)
148 3qou_A Protein YBBN; thioredox 69.6 64 0.0022 29.0 15.7 63 63-131 118-180 (287)
149 2gxg_A 146AA long hypothetical 69.3 36 0.0012 27.1 9.9 47 305-351 48-97 (146)
150 4g1t_A Interferon-induced prot 69.1 33 0.0011 32.7 11.1 70 61-130 50-122 (472)
151 2nnn_A Probable transcriptiona 69.0 32 0.0011 27.2 9.4 41 306-346 51-91 (140)
152 2if4_A ATFKBP42; FKBP-like, al 68.9 16 0.00056 34.2 8.7 105 60-194 177-292 (338)
153 1kt0_A FKBP51, 51 kDa FK506-bi 68.7 90 0.0031 30.4 16.6 106 7-131 275-380 (457)
154 3fp2_A TPR repeat-containing p 68.6 85 0.0029 30.1 23.8 108 51-195 232-339 (537)
155 3n71_A Histone lysine methyltr 68.6 41 0.0014 33.8 12.0 111 60-193 349-462 (490)
156 2ia0_A Putative HTH-type trans 68.2 28 0.00097 29.6 9.3 40 305-344 29-71 (171)
157 3bpv_A Transcriptional regulat 68.0 30 0.001 27.3 9.0 43 305-347 41-83 (138)
158 1s3j_A YUSO protein; structura 67.7 35 0.0012 27.5 9.6 41 305-345 49-89 (155)
159 3oop_A LIN2960 protein; protei 67.7 45 0.0015 26.6 10.2 47 306-352 50-99 (143)
160 2vsy_A XCC0866; transferase, g 67.7 46 0.0016 33.2 12.2 98 62-195 57-157 (568)
161 2fbi_A Probable transcriptiona 67.7 43 0.0015 26.4 10.6 43 305-347 48-90 (142)
162 2lni_A Stress-induced-phosphop 67.7 20 0.0007 26.9 7.7 64 62-131 50-113 (133)
163 1tbx_A ORF F-93, hypothetical 67.6 37 0.0013 25.5 9.5 69 305-375 20-92 (99)
164 4abn_A Tetratricopeptide repea 67.5 96 0.0033 30.3 17.1 96 62-194 137-249 (474)
165 2kc7_A BFR218_protein; tetratr 67.1 23 0.0008 25.6 7.6 60 66-131 4-64 (99)
166 3eco_A MEPR; mutlidrug efflux 66.9 41 0.0014 26.6 9.7 41 306-346 46-86 (139)
167 3txn_A 26S proteasome regulato 66.9 95 0.0033 30.3 13.9 107 63-194 20-167 (394)
168 2rdp_A Putative transcriptiona 66.7 41 0.0014 27.0 9.7 42 305-346 54-95 (150)
169 3urz_A Uncharacterized protein 66.5 54 0.0018 27.8 10.9 65 61-131 53-117 (208)
170 2hr3_A Probable transcriptiona 66.4 30 0.001 27.7 8.8 47 305-351 48-97 (147)
171 2y75_A HTH-type transcriptiona 66.3 23 0.00078 28.5 7.9 53 296-348 13-67 (129)
172 4gcn_A Protein STI-1; structur 65.5 46 0.0016 25.9 12.9 97 6-130 14-111 (127)
173 3bj6_A Transcriptional regulat 65.4 40 0.0014 27.1 9.4 47 305-351 52-101 (152)
174 1lj9_A Transcriptional regulat 65.2 46 0.0016 26.4 9.7 41 305-345 41-81 (144)
175 2htj_A P fimbrial regulatory p 65.2 23 0.00077 26.0 7.1 34 306-339 13-46 (81)
176 2d1h_A ST1889, 109AA long hypo 65.1 41 0.0014 25.2 10.0 41 305-345 34-74 (109)
177 2jt1_A PEFI protein; solution 65.1 15 0.0005 27.5 5.9 33 307-339 24-56 (77)
178 3i5p_A Nucleoporin NUP170; hel 64.9 17 0.00057 37.3 8.1 49 166-215 217-265 (525)
179 3cuo_A Uncharacterized HTH-typ 64.9 40 0.0014 25.0 8.7 39 306-344 37-75 (99)
180 2cfx_A HTH-type transcriptiona 64.0 19 0.00065 29.6 7.1 41 304-344 16-59 (144)
181 3s2w_A Transcriptional regulat 63.8 38 0.0013 27.7 9.1 47 305-351 62-111 (159)
182 2frh_A SARA, staphylococcal ac 63.3 28 0.00097 27.7 7.9 67 306-374 52-121 (127)
183 3qww_A SET and MYND domain-con 62.8 54 0.0019 32.3 11.4 100 73-194 309-410 (433)
184 2a61_A Transcriptional regulat 62.7 56 0.0019 25.9 10.7 43 305-347 45-87 (145)
185 2yhc_A BAMD, UPF0169 lipoprote 62.5 73 0.0025 27.2 13.8 66 62-130 147-212 (225)
186 3g3z_A NMB1585, transcriptiona 62.3 30 0.001 27.7 8.1 48 305-352 43-93 (145)
187 2v5f_A Prolyl 4-hydroxylase su 61.9 37 0.0013 25.7 8.1 68 63-131 6-75 (104)
188 2eth_A Transcriptional regulat 61.9 55 0.0019 26.5 9.7 46 306-351 57-105 (154)
189 2nyx_A Probable transcriptiona 61.5 56 0.0019 27.0 9.8 42 305-346 57-98 (168)
190 3f6o_A Probable transcriptiona 61.3 57 0.002 25.6 9.8 76 306-383 30-106 (118)
191 2cg4_A Regulatory protein ASNC 61.3 21 0.00072 29.5 6.9 40 305-344 20-62 (152)
192 2fbn_A 70 kDa peptidylprolyl i 60.9 70 0.0024 26.5 12.8 107 7-131 45-151 (198)
193 3qky_A Outer membrane assembly 60.7 83 0.0028 27.2 17.8 104 62-195 15-126 (261)
194 3bja_A Transcriptional regulat 60.5 32 0.0011 27.1 7.7 42 305-346 45-86 (139)
195 3sz7_A HSC70 cochaperone (SGT) 60.2 64 0.0022 25.8 10.3 69 97-195 6-74 (164)
196 2p5v_A Transcriptional regulat 60.2 23 0.00077 29.7 7.0 40 305-344 22-64 (162)
197 1xd7_A YWNA; structural genomi 59.9 24 0.00081 29.2 7.0 53 294-348 11-63 (145)
198 3deu_A Transcriptional regulat 59.7 56 0.0019 27.1 9.5 50 303-352 64-116 (166)
199 2pl2_A Hypothetical conserved 59.1 83 0.0028 26.7 15.8 96 64-195 7-113 (217)
200 3cjn_A Transcriptional regulat 59.1 62 0.0021 26.3 9.6 47 305-351 64-113 (162)
201 2dbb_A Putative HTH-type trans 58.0 24 0.00082 29.0 6.7 40 305-344 21-63 (151)
202 3bdd_A Regulatory protein MARR 57.8 32 0.0011 27.2 7.4 40 305-344 43-82 (142)
203 3k0l_A Repressor protein; heli 57.7 50 0.0017 27.1 8.8 47 305-351 58-107 (162)
204 1w3b_A UDP-N-acetylglucosamine 57.6 1.2E+02 0.004 27.9 16.1 98 62-195 203-300 (388)
205 3bro_A Transcriptional regulat 57.5 55 0.0019 25.7 8.8 40 307-346 50-89 (141)
206 3jth_A Transcription activator 57.0 58 0.002 24.4 8.4 38 306-343 35-72 (98)
207 2hzt_A Putative HTH-type trans 56.5 49 0.0017 25.5 8.0 42 305-346 25-67 (107)
208 3tgn_A ADC operon repressor AD 56.5 71 0.0024 25.3 9.3 48 304-352 49-99 (146)
209 2v79_A DNA replication protein 56.4 14 0.00048 30.6 4.9 43 305-347 49-93 (135)
210 3nrv_A Putative transcriptiona 56.4 33 0.0011 27.5 7.3 48 304-351 51-101 (148)
211 3lwf_A LIN1550 protein, putati 56.3 54 0.0019 27.7 8.8 60 293-352 28-89 (159)
212 3k9i_A BH0479 protein; putativ 56.3 48 0.0016 25.0 7.9 88 74-194 2-89 (117)
213 1ouv_A Conserved hypothetical 56.0 88 0.003 27.1 10.7 93 62-194 6-106 (273)
214 4i17_A Hypothetical protein; T 56.0 91 0.0031 26.2 18.7 117 7-131 14-146 (228)
215 3t8r_A Staphylococcus aureus C 56.0 38 0.0013 28.0 7.6 55 294-348 13-69 (143)
216 1ucr_A Protein DSVD; dissimila 55.9 14 0.00048 27.8 4.2 35 303-337 17-52 (78)
217 3cdh_A Transcriptional regulat 55.8 54 0.0018 26.5 8.6 48 305-352 55-105 (155)
218 3ech_A MEXR, multidrug resista 55.6 27 0.00092 28.0 6.5 42 305-346 49-90 (142)
219 1na3_A Designed protein CTPR2; 55.4 49 0.0017 22.9 9.2 70 96-195 3-72 (91)
220 3l7w_A Putative uncharacterize 55.2 36 0.0012 26.5 7.0 62 316-377 35-98 (108)
221 3nqo_A MARR-family transcripti 55.2 64 0.0022 27.4 9.3 42 305-346 55-96 (189)
222 2xcb_A PCRH, regulatory protei 55.2 73 0.0025 24.9 9.5 66 100-195 16-81 (142)
223 2pl2_A Hypothetical conserved 54.9 98 0.0033 26.2 18.5 145 5-194 10-179 (217)
224 1wao_1 Serine/threonine protei 54.7 15 0.0005 36.6 5.6 27 103-129 41-67 (477)
225 3upv_A Heat shock protein STI1 54.6 66 0.0023 24.2 12.0 64 62-131 38-101 (126)
226 3e6m_A MARR family transcripti 53.7 55 0.0019 26.8 8.3 48 305-352 65-115 (161)
227 3df8_A Possible HXLR family tr 53.7 32 0.0011 27.0 6.5 43 307-350 42-85 (111)
228 1elw_A TPR1-domain of HOP; HOP 53.7 59 0.002 23.3 10.9 64 62-131 38-101 (118)
229 1q1h_A TFE, transcription fact 53.6 17 0.00059 28.2 4.8 35 306-340 32-66 (110)
230 3f3x_A Transcriptional regulat 52.7 84 0.0029 24.9 9.3 42 305-347 49-90 (144)
231 2fa5_A Transcriptional regulat 52.7 71 0.0024 25.9 8.9 47 305-351 61-110 (162)
232 3qww_A SET and MYND domain-con 52.0 44 0.0015 33.0 8.6 71 60-131 338-411 (433)
233 2qvo_A Uncharacterized protein 51.8 42 0.0014 25.2 6.7 45 308-352 31-75 (95)
234 2pzi_A Probable serine/threoni 51.6 1.7E+02 0.0058 30.1 13.5 141 73-252 402-545 (681)
235 2qww_A Transcriptional regulat 51.5 33 0.0011 27.7 6.5 48 305-352 53-105 (154)
236 2w25_A Probable transcriptiona 50.3 38 0.0013 27.8 6.7 40 305-344 19-61 (150)
237 3rkv_A Putative peptidylprolyl 49.8 95 0.0033 24.6 9.4 102 99-221 8-113 (162)
238 3qwp_A SET and MYND domain-con 49.3 1.5E+02 0.0052 28.9 12.0 100 72-194 297-399 (429)
239 1fch_A Peroxisomal targeting s 49.2 1.5E+02 0.005 26.6 18.5 64 62-131 98-161 (368)
240 2vgx_A Chaperone SYCD; alterna 48.9 1E+02 0.0034 24.6 9.8 66 100-195 19-84 (148)
241 2kko_A Possible transcriptiona 48.5 53 0.0018 25.4 7.0 37 306-342 37-73 (108)
242 2k9l_A RNA polymerase sigma fa 48.1 17 0.00059 26.9 3.7 40 292-331 32-72 (76)
243 3i4p_A Transcriptional regulat 48.1 75 0.0026 26.5 8.4 42 303-344 13-57 (162)
244 2pex_A Transcriptional regulat 47.9 41 0.0014 27.2 6.5 47 305-351 59-108 (153)
245 1hz4_A MALT regulatory protein 47.7 1.6E+02 0.0056 26.7 19.3 114 60-195 51-164 (373)
246 1wao_1 Serine/threonine protei 47.2 82 0.0028 31.0 9.8 64 62-131 40-103 (477)
247 1hxi_A PEX5, peroxisome target 47.1 61 0.0021 24.9 7.2 63 62-130 51-113 (121)
248 3q49_B STIP1 homology and U bo 47.0 90 0.0031 23.5 12.4 64 62-131 43-106 (137)
249 2e1c_A Putative HTH-type trans 45.7 31 0.0011 29.4 5.6 41 304-344 38-81 (171)
250 3hsr_A HTH-type transcriptiona 45.6 36 0.0012 27.2 5.8 48 305-352 48-98 (140)
251 1oyi_A Double-stranded RNA-bin 45.4 18 0.0006 27.6 3.4 32 308-339 31-62 (82)
252 2e2e_A Formate-dependent nitri 45.3 71 0.0024 25.7 7.7 63 63-131 79-144 (177)
253 2pi2_A Replication protein A 3 45.2 4.5 0.00015 37.7 0.0 38 306-343 223-261 (270)
254 4hbl_A Transcriptional regulat 44.4 1.2E+02 0.0041 24.2 10.5 48 305-352 53-103 (149)
255 1ldd_A APC2WHB, anaphase promo 44.2 57 0.0019 24.2 6.0 42 298-339 13-65 (74)
256 2cyy_A Putative HTH-type trans 43.9 32 0.0011 28.3 5.3 39 305-343 19-60 (151)
257 2bv6_A MGRA, HTH-type transcri 43.6 53 0.0018 26.0 6.5 41 305-345 49-89 (142)
258 2pg4_A Uncharacterized protein 43.2 39 0.0014 25.3 5.3 45 307-351 30-76 (95)
259 2pzi_A Probable serine/threoni 42.1 96 0.0033 32.1 9.7 64 62-131 433-496 (681)
260 1ouv_A Conserved hypothetical 41.8 1.7E+02 0.0058 25.2 10.8 91 64-194 40-142 (273)
261 3fm5_A Transcriptional regulat 41.8 60 0.0021 26.0 6.6 41 306-346 53-93 (150)
262 1pc2_A Mitochondria fission pr 41.7 1.5E+02 0.005 25.0 9.1 66 62-131 32-100 (152)
263 1i1g_A Transcriptional regulat 41.7 37 0.0013 27.3 5.3 34 305-338 16-49 (141)
264 2ond_A Cleavage stimulation fa 41.5 1.9E+02 0.0066 25.8 13.0 68 62-131 203-270 (308)
265 1ylf_A RRF2 family protein; st 41.5 35 0.0012 28.2 5.1 47 296-342 18-65 (149)
266 3boq_A Transcriptional regulat 41.4 37 0.0013 27.6 5.3 49 303-351 58-109 (160)
267 4b4t_O 26S proteasome regulato 41.2 1.5E+02 0.0052 28.6 10.5 96 25-127 80-194 (393)
268 3tqn_A Transcriptional regulat 41.1 65 0.0022 25.2 6.4 44 303-348 28-72 (113)
269 4aik_A Transcriptional regulat 41.0 1.4E+02 0.0049 24.2 10.4 46 301-346 40-85 (151)
270 4b4t_P 26S proteasome regulato 40.6 2.7E+02 0.0093 27.2 15.0 71 99-193 134-204 (445)
271 4b0z_A RPN12, 26S proteasome r 39.6 1.9E+02 0.0066 25.6 10.2 96 67-186 13-117 (229)
272 2gau_A Transcriptional regulat 39.0 79 0.0027 27.1 7.3 52 305-364 178-229 (232)
273 4b8x_A SCO5413, possible MARR- 38.7 85 0.0029 25.4 7.1 42 306-347 50-91 (147)
274 3ma5_A Tetratricopeptide repea 38.4 1.1E+02 0.0039 22.2 7.7 62 103-194 8-69 (100)
275 2pn6_A ST1022, 150AA long hypo 38.4 49 0.0017 27.0 5.5 40 305-344 15-57 (150)
276 2r5s_A Uncharacterized protein 38.4 1.5E+02 0.0053 23.8 13.3 60 65-130 9-68 (176)
277 1z91_A Organic hydroperoxide r 38.3 46 0.0016 26.5 5.3 46 306-351 53-101 (147)
278 3qou_A Protein YBBN; thioredox 38.3 2.1E+02 0.0073 25.4 12.3 98 62-195 151-248 (287)
279 3u2r_A Regulatory protein MARR 37.9 86 0.003 25.7 7.1 42 306-347 61-102 (168)
280 2r5s_A Uncharacterized protein 37.7 60 0.0021 26.4 6.1 63 62-128 108-170 (176)
281 4a5u_B 30S ribosomal protein S 37.5 49 0.0017 25.4 4.9 38 36-73 3-40 (88)
282 1r1u_A CZRA, repressor protein 37.1 1.1E+02 0.0037 23.3 7.1 45 306-352 38-82 (106)
283 2v9v_A Selenocysteine-specific 37.0 1.4E+02 0.0049 23.5 8.1 59 308-372 18-76 (135)
284 3ffl_A Anaphase-promoting comp 36.7 93 0.0032 26.8 7.0 72 102-194 20-91 (167)
285 3kp7_A Transcriptional regulat 36.4 92 0.0032 24.9 6.9 48 304-351 48-100 (151)
286 1y0u_A Arsenical resistance op 35.8 52 0.0018 24.7 4.9 43 306-352 42-84 (96)
287 3k69_A Putative transcription 35.6 66 0.0023 27.2 6.0 54 295-348 15-69 (162)
288 1xi4_A Clathrin heavy chain; a 35.5 4.3E+02 0.015 30.7 13.9 51 66-130 1199-1249(1630)
289 1b89_A Protein (clathrin heavy 35.5 34 0.0011 34.3 4.6 25 169-193 151-175 (449)
290 3dv8_A Transcriptional regulat 35.3 95 0.0033 26.2 7.2 51 306-364 168-218 (220)
291 1u2w_A CADC repressor, cadmium 35.1 77 0.0026 25.0 6.1 35 306-340 55-89 (122)
292 3ulw_A 30S ribosomal protein S 34.9 56 0.0019 25.4 4.8 37 36-72 7-43 (93)
293 3neu_A LIN1836 protein; struct 34.8 78 0.0027 25.3 6.1 45 303-349 32-77 (125)
294 2f2e_A PA1607; transcription f 34.7 93 0.0032 25.5 6.7 42 305-346 35-76 (146)
295 2kc7_A BFR218_protein; tetratr 34.5 1.2E+02 0.0041 21.5 6.8 61 106-195 4-64 (99)
296 4gco_A Protein STI-1; structur 34.1 1.6E+02 0.0054 22.6 10.8 65 100-194 11-75 (126)
297 2p7v_B Sigma-70, RNA polymeras 33.6 62 0.0021 22.5 4.7 29 305-333 23-51 (68)
298 2fsw_A PG_0823 protein; alpha- 33.5 67 0.0023 24.7 5.3 42 305-346 36-78 (107)
299 2c2l_A CHIP, carboxy terminus 33.2 90 0.0031 27.9 6.9 64 62-131 38-101 (281)
300 1z6r_A MLC protein; transcript 33.1 65 0.0022 31.0 6.3 46 293-338 13-61 (406)
301 2vn2_A DNAD, chromosome replic 33.0 35 0.0012 27.6 3.6 35 308-342 52-86 (128)
302 1r1t_A Transcriptional repress 32.8 1.8E+02 0.0062 22.9 8.4 37 306-342 58-94 (122)
303 2v5f_A Prolyl 4-hydroxylase su 32.6 1E+02 0.0034 23.1 6.2 69 103-194 6-74 (104)
304 3r8n_O 30S ribosomal protein S 32.3 67 0.0023 24.6 4.9 38 36-73 3-40 (88)
305 3mkq_A Coatomer beta'-subunit; 32.0 1.6E+02 0.0055 30.1 9.5 24 171-194 741-764 (814)
306 2fxa_A Protease production reg 31.8 76 0.0026 27.6 6.0 46 306-351 61-109 (207)
307 3d0s_A Transcriptional regulat 31.8 90 0.0031 26.6 6.5 43 306-352 176-218 (227)
308 2ond_A Cleavage stimulation fa 31.7 2.8E+02 0.0094 24.7 11.3 63 62-130 99-162 (308)
309 3b02_A Transcriptional regulat 31.4 91 0.0031 26.0 6.3 43 307-353 139-181 (195)
310 2oz6_A Virulence factor regula 30.8 48 0.0016 27.9 4.4 32 307-338 164-195 (207)
311 3mkq_A Coatomer beta'-subunit; 30.8 2.8E+02 0.0094 28.3 11.0 90 72-194 662-751 (814)
312 1z05_A Transcriptional regulat 30.7 79 0.0027 30.8 6.5 47 293-339 36-85 (429)
313 3by6_A Predicted transcription 30.7 95 0.0032 24.9 5.9 45 303-349 30-75 (126)
314 1ihg_A Cyclophilin 40; ppiase 30.5 3.4E+02 0.012 25.4 12.3 82 100-195 221-302 (370)
315 2x4h_A Hypothetical protein SS 30.4 88 0.003 24.8 5.7 36 304-339 28-63 (139)
316 3dkw_A DNR protein; CRP-FNR, H 30.2 1.1E+02 0.0037 26.0 6.7 34 305-338 176-209 (227)
317 1a32_A Ribosomal protein S15; 30.1 72 0.0025 24.5 4.7 36 36-71 3-38 (88)
318 2if4_A ATFKBP42; FKBP-like, al 29.7 1.4E+02 0.0048 27.6 7.8 63 63-131 231-293 (338)
319 1tc3_C Protein (TC3 transposas 29.5 73 0.0025 19.7 4.2 29 304-332 18-46 (51)
320 2vqe_O 30S ribosomal protein S 29.5 66 0.0022 24.8 4.4 38 36-73 4-41 (89)
321 4ham_A LMO2241 protein; struct 29.3 1.2E+02 0.0042 24.3 6.4 45 303-349 33-78 (134)
322 4a5n_A Uncharacterized HTH-typ 29.2 2.3E+02 0.0078 22.9 8.3 62 305-366 37-106 (131)
323 2k9m_A RNA polymerase sigma fa 28.7 49 0.0017 27.2 3.8 27 305-331 37-63 (130)
324 3fx3_A Cyclic nucleotide-bindi 28.7 91 0.0031 26.8 6.0 41 307-352 178-218 (237)
325 1uly_A Hypothetical protein PH 28.5 1.3E+02 0.0043 26.1 6.8 35 306-340 32-66 (192)
326 1ku3_A Sigma factor SIGA; heli 28.5 81 0.0028 22.3 4.7 27 306-332 29-55 (73)
327 4ev0_A Transcription regulator 28.4 55 0.0019 27.7 4.4 52 305-364 161-212 (216)
328 3e97_A Transcriptional regulat 28.0 58 0.002 28.0 4.5 34 305-338 173-206 (231)
329 2fu4_A Ferric uptake regulatio 28.0 96 0.0033 22.3 5.1 45 306-351 32-81 (83)
330 3ryp_A Catabolite gene activat 27.9 58 0.002 27.4 4.4 32 307-338 167-198 (210)
331 2zcw_A TTHA1359, transcription 27.8 59 0.002 27.4 4.4 43 306-352 145-187 (202)
332 3gyz_A Chaperone protein IPGC; 27.8 2.4E+02 0.0082 22.7 8.7 66 100-195 34-99 (151)
333 2b0l_A GTP-sensing transcripti 27.7 77 0.0026 24.5 4.7 46 304-349 39-85 (102)
334 4fhn_B Nucleoporin NUP120; pro 27.6 1.9E+02 0.0066 32.0 9.6 118 65-214 845-979 (1139)
335 2qlz_A Transcription factor PF 27.2 74 0.0025 28.7 5.1 46 304-352 175-220 (232)
336 1xmk_A Double-stranded RNA-spe 27.1 59 0.002 24.3 3.7 34 306-339 24-58 (79)
337 3jw4_A Transcriptional regulat 27.1 53 0.0018 26.3 3.8 41 306-346 56-96 (148)
338 3iwz_A CAP-like, catabolite ac 26.6 62 0.0021 27.7 4.4 32 307-338 187-218 (230)
339 2o8x_A Probable RNA polymerase 26.5 92 0.0032 21.3 4.6 30 303-332 27-56 (70)
340 2wm9_A Dedicator of cytokinesi 26.3 60 0.0021 32.1 4.7 32 159-190 4-35 (428)
341 3la7_A Global nitrogen regulat 26.1 65 0.0022 28.2 4.5 33 306-338 192-224 (243)
342 2fmy_A COOA, carbon monoxide o 26.0 66 0.0023 27.5 4.5 33 305-337 165-197 (220)
343 2kat_A Uncharacterized protein 25.7 2E+02 0.0067 21.0 7.5 62 103-194 20-81 (115)
344 3rjv_A Putative SEL1 repeat pr 25.6 1.9E+02 0.0067 24.2 7.5 92 62-194 18-117 (212)
345 1ngr_A P75 low affinity neurot 25.5 58 0.002 24.6 3.4 47 310-378 24-74 (85)
346 2ek5_A Predicted transcription 25.5 1.4E+02 0.0048 24.0 6.1 45 303-349 23-68 (129)
347 2ooe_A Cleavage stimulation fa 25.1 4.7E+02 0.016 25.2 13.1 68 62-131 425-492 (530)
348 3mzy_A RNA polymerase sigma-H 25.0 2.1E+02 0.0072 22.6 7.3 30 303-332 120-149 (164)
349 2lkp_A Transcriptional regulat 24.8 2.3E+02 0.008 21.6 8.0 35 306-340 44-78 (119)
350 1tty_A Sigma-A, RNA polymerase 24.7 98 0.0034 22.8 4.7 28 306-333 37-64 (87)
351 4f3v_A ESX-1 secretion system 24.4 2.4E+02 0.0083 26.0 8.3 68 61-131 170-237 (282)
352 3cuq_B Vacuolar protein-sortin 24.2 2.6E+02 0.0088 24.8 8.1 44 306-350 167-210 (218)
353 1eij_A Hypothetical protein MT 23.9 57 0.002 24.6 3.0 32 311-342 23-57 (80)
354 1ft9_A Carbon monoxide oxidati 23.8 66 0.0023 27.6 4.0 32 307-338 163-194 (222)
355 1fse_A GERE; helix-turn-helix 23.5 1.4E+02 0.0048 20.5 5.2 29 304-332 23-51 (74)
356 3hug_A RNA polymerase sigma fa 23.4 1.1E+02 0.0038 22.6 4.8 30 303-332 49-78 (92)
357 1zyb_A Transcription regulator 23.0 69 0.0024 27.8 4.0 33 306-338 185-217 (232)
358 1on2_A Transcriptional regulat 22.9 2.8E+02 0.0095 21.8 10.5 45 305-352 20-64 (142)
359 2jpc_A SSRB; DNA binding prote 22.9 88 0.003 20.9 3.8 30 304-333 10-39 (61)
360 4g26_A Pentatricopeptide repea 22.8 4.9E+02 0.017 25.6 10.8 96 66-195 109-204 (501)
361 1nd9_A Translation initiation 22.6 58 0.002 21.1 2.6 25 307-331 2-26 (49)
362 1b89_A Protein (clathrin heavy 22.5 3.3E+02 0.011 27.0 9.2 25 171-195 212-236 (449)
363 3e6c_C CPRK, cyclic nucleotide 22.3 85 0.0029 27.5 4.5 67 305-375 175-248 (250)
364 2hoe_A N-acetylglucosamine kin 22.3 75 0.0026 30.4 4.4 35 305-339 31-65 (380)
365 1sfu_A 34L protein; protein/Z- 22.3 1.7E+02 0.0057 21.8 5.3 33 308-340 30-62 (75)
366 2qen_A Walker-type ATPase; unk 22.3 2.2E+02 0.0076 25.7 7.6 55 299-364 289-348 (350)
367 3pqk_A Biofilm growth-associat 22.1 2.5E+02 0.0084 20.9 9.0 40 306-345 35-74 (102)
368 1yyv_A Putative transcriptiona 22.0 3E+02 0.01 21.9 8.0 42 305-346 46-88 (131)
369 1xi4_A Clathrin heavy chain; a 21.9 6.2E+02 0.021 29.5 12.1 122 8-130 1288-1444(1630)
370 2bgc_A PRFA; bacterial infecti 21.9 1.3E+02 0.0045 26.0 5.7 51 307-365 169-220 (238)
371 2k9s_A Arabinose operon regula 21.6 1.7E+02 0.0059 22.0 5.7 33 298-330 9-43 (107)
372 3k2z_A LEXA repressor; winged 21.5 2.1E+02 0.0072 24.4 6.8 34 307-340 24-57 (196)
373 3kcc_A Catabolite gene activat 21.4 87 0.003 27.8 4.4 32 307-338 217-248 (260)
374 1j9i_A GPNU1 DBD;, terminase s 21.3 88 0.003 22.0 3.6 50 307-365 2-51 (68)
375 2w48_A Sorbitol operon regulat 21.2 1.4E+02 0.0047 27.8 5.9 43 303-345 17-59 (315)
376 2rg8_A Programmed cell death p 21.2 1.8E+02 0.0062 24.6 6.2 54 60-120 8-61 (165)
377 3bee_A Putative YFRE protein; 21.1 2.4E+02 0.0082 20.8 6.3 28 62-89 43-70 (93)
378 2ff4_A Probable regulatory pro 20.8 4.5E+02 0.015 24.9 9.7 70 57-132 166-235 (388)
379 3lsg_A Two-component response 20.7 1.9E+02 0.0063 21.6 5.7 25 307-331 19-43 (103)
380 3qbm_A TETR transcriptional re 20.7 1.4E+02 0.0047 24.3 5.3 36 287-322 6-42 (199)
381 1x3u_A Transcriptional regulat 20.6 2.2E+02 0.0076 19.8 6.4 30 304-333 28-57 (79)
382 3mkq_B Coatomer subunit alpha; 20.4 4.1E+02 0.014 22.8 11.2 89 73-194 16-104 (177)
383 2jsc_A Transcriptional regulat 20.4 1.2E+02 0.0042 23.6 4.7 36 307-342 34-69 (118)
384 3ez9_A Para; DNA binding, wing 20.3 87 0.003 30.1 4.4 54 287-340 22-76 (403)
385 3ffl_A Anaphase-promoting comp 20.3 4E+02 0.014 22.7 8.7 89 41-131 43-151 (167)
386 3i5p_A Nucleoporin NUP170; hel 20.2 1E+02 0.0035 31.4 5.0 40 64-104 219-258 (525)
387 2ooe_A Cleavage stimulation fa 20.1 5.4E+02 0.018 24.8 10.4 64 62-130 321-384 (530)
388 2p4w_A Transcriptional regulat 20.1 1.8E+02 0.006 25.4 6.0 37 306-342 27-63 (202)
389 3iuo_A ATP-dependent DNA helic 20.1 1.4E+02 0.0047 23.9 4.9 34 303-336 28-61 (122)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-85 Score=672.94 Aligned_cols=366 Identities=39% Similarity=0.658 Sum_probs=307.6
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 016147 5 LLLFIIRSVYLFLQAVTAMVQQAMQYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAA 82 (394)
Q Consensus 5 ~~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~--d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa 82 (394)
++.+|||||||+|+||++||+.+|.|++++| |.++|+.++++|+.+|+|+||||+||||++..||++|+++|++.+|+
T Consensus 78 ~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~ 157 (445)
T 4b4t_P 78 QLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAA 157 (445)
T ss_dssp HHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4788999999999999999999999999888 46789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchH
Q 016147 83 DLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLL 162 (394)
Q Consensus 83 ~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (394)
++|+++++||+|+|++.+|++++|+|||||++.+||++|+++++||+.+++... ..+
T Consensus 158 ~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-----------------------~~~ 214 (445)
T 4b4t_P 158 DILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-----------------------KYE 214 (445)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-----------------------CCH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-----------------------CcH
Confidence 999999999999999999999999999999999999999999999998877543 347
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhhhhhcccCcCCCh
Q 016147 163 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIP 242 (394)
Q Consensus 163 d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~~l~~d~~l~~ip 242 (394)
++|++||.++++++.|+++|++||++|++++++|.+.+|+..+..+|+++|+|+||+|++|+|++++++++.|++++++|
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~ 294 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLE 294 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccH
Confidence 89999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCCHH
Q 016147 243 NFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQ 322 (394)
Q Consensus 243 ~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls~~ 322 (394)
.|+.|+++|.+++|++|+.+...|+..+..+..++.+..+..||+.|+++|+|||++++++||++|+|++||++||+|++
T Consensus 295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~ 374 (445)
T 4b4t_P 295 SQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTES 374 (445)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHH
Confidence 99999999999999999998888888887665555666678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc
Q 016147 323 EAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALK 393 (394)
Q Consensus 323 e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V~k~~~lI~ke~~~~~~~~~ 393 (394)
++|..+++||.+|+|+|+||||+|||+|+++++++++|++|+.+|++||+.|++++|+|+||+|||++++|
T Consensus 375 evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~~~~~~k 445 (445)
T 4b4t_P 375 QTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQAK 445 (445)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEEC-------------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 2
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-42 Score=354.20 Aligned_cols=336 Identities=13% Similarity=0.090 Sum_probs=250.4
Q ss_pred HhhhchhHHHHHHHHHHHHHhccCCCC-----hHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 016147 10 IRSVYLFLQAVTAMVQQAMQYIDQTPD-----LDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADL 84 (394)
Q Consensus 10 ~k~r~q~k~ai~~~v~~~~~~~~~~~d-----~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~i 84 (394)
+.+.++.+.+...+++....|...+.+ .+.+++.+++..+.++++.+.|.|+++....||++|++.||+++|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~ 153 (429)
T 4b4t_R 74 NGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKT 153 (429)
T ss_dssp CSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHH
T ss_pred ccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667777777777777665443322 255688888888888888899999999999999999999999999999
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHH
Q 016147 85 MQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLEL 164 (394)
Q Consensus 85 L~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (394)
+..+..+|.++ ++|+++++.++|++++.+||.+|..+++|++.....+ ++++.
T Consensus 154 ~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~------------------------~d~~~ 206 (429)
T 4b4t_R 154 LGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG------------------------GDWER 206 (429)
T ss_dssp HHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC------------------------CCTHH
T ss_pred HHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC------------------------CCHHH
Confidence 99999998754 7999999999999999999999999999998875432 24678
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhhhhhcccC----cCC
Q 016147 165 KRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKN----LSE 240 (394)
Q Consensus 165 klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~~l~~d~~----l~~ 240 (394)
+.+++.+.+.++.+.++|.+||++|++++.|+...+ .......+++++++++.++.|+++..++..++. ++.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e----~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~ 282 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIE----LTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLIST 282 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSC----HHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccc----hhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccC
Confidence 889999999999999999999999999999987643 344455666677777788889999988888754 344
Q ss_pred ChhH---HHHHHHhcchhcccchhhHHHHHHhhhh-hhhhcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 016147 241 IPNF---RLLLKQLVTMEVIQWTSLWNTYKDEFEN-ETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAEL 316 (394)
Q Consensus 241 ip~~---~~L~k~f~~~eli~~~~~~~~~~~~l~~-~~~~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~l 316 (394)
.|.+ ..++.+|.+.+.. .++...+.. ...+..|++...||..|.+++++||+..+++||++|+|++||++
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~------~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~ 356 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYA------SYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASA 356 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhccHH------HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHH
Confidence 4544 4556666553332 122222222 23345677888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016147 317 LCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIH 382 (394)
Q Consensus 317 L~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V~k~~~lI~ 382 (394)
||+|++++|+.|++||.+|+|+|||||++|+|+|.+|.+.+..+++|.++++.|++.|+|.+|+|.
T Consensus 357 l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 357 FGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp HTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC------------------------------
T ss_pred hCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998899999999999999999999999884
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-35 Score=291.05 Aligned_cols=345 Identities=12% Similarity=0.159 Sum_probs=243.6
Q ss_pred hhhchhHHH-HHHHHHHHHHhccCCCCh-HHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 016147 11 RSVYLFLQA-VTAMVQQAMQYIDQTPDL-DTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEV 88 (394)
Q Consensus 11 k~r~q~k~a-i~~~v~~~~~~~~~~~d~-~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i 88 (394)
+.++++.++ ..++|+..++.+...++. +....+.+....+. +++..+..++++...||.+|...|++.+|.++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 344444333 556777777877776653 44444444222211 112223457999999999999999999999999999
Q ss_pred hhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHH
Q 016147 89 AVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIY 168 (394)
Q Consensus 89 ~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~ 168 (394)
..++.+.+++..++++++.++|+|+..+||.+|..+++|+........ .....+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------------~~~~~~~~~ 218 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-----------------------CPTQTVAEL 218 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-----------------------CCHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-----------------------CchHHHHHH
Confidence 999999999999999999999999999999999999999976533211 235778899
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCCh---hcHHHHHHHHHHHHHhCCCChhchHhhhhhh--cccCcCCChh
Q 016147 169 YELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDP---AQWMPVLRKICWYLVLAPHDPMQSSLLNSTL--EDKNLSEIPN 243 (394)
Q Consensus 169 ~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~---~~~~~~L~~av~~~ILap~~~~rs~ll~~l~--~d~~l~~ip~ 243 (394)
+.+++.++.+.++|.+|+++|.+.+.++....+. ..+..++...++|.++.+........+.... .....+.+|.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDA 298 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhH
Confidence 9999999999999999999999999876443322 3455666777777777776665555544322 2223456788
Q ss_pred HHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCCHHH
Q 016147 244 FRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQE 323 (394)
Q Consensus 244 ~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls~~e 323 (394)
+..+...|.+.++..|+.....|... +..+++...+|..+.+++++||++.+++||++|++++||++||+|+++
T Consensus 299 ~~~l~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~ 372 (434)
T 4b4t_Q 299 MKAVAEAYNNRSLLDFNTALKQYEKE------LMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQ 372 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHH------HTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH------HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHH
Confidence 99999999998887776654444333 345566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 016147 324 AEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 388 (394)
Q Consensus 324 ~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V~k~~~lI~ke~~~~ 388 (394)
+|..+++||.+|+++|+|||++|+|.|..+..++..+++|.+.+.++.+.|+. |++|..|+|
T Consensus 373 ~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~---L~~ka~~ly 434 (434)
T 4b4t_Q 373 VEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQ---LFEKASVLY 434 (434)
T ss_dssp HHHHHHHHHHHTSSCCEEETTTTEEECC-------------------------------------
T ss_pred HHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 99999999999999999999999999988888888999999999999888875 689999887
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.1e-31 Score=269.51 Aligned_cols=325 Identities=13% Similarity=0.150 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHhccCCCCh-HHHHHHHH-Hhhh-hcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhc
Q 016147 17 LQAVTAMVQQAMQYIDQTPDL-DTRIELIK-TLNS-VSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 93 (394)
Q Consensus 17 k~ai~~~v~~~~~~~~~~~d~-~~k~~~i~-~L~~-vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~ 93 (394)
|.=.+++|+..+..+..+|+. +..+.+.. .+.- -.++..|+ |.++..+||++|.+.|++.+|.+++..+.-|+.
T Consensus 54 kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl---r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~ 130 (394)
T 3txn_A 54 KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL---RQSLEARLIALYFDTALYTEALALGAQLLRELK 130 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 334567788888888777754 33333222 2222 13445554 455667999999999999999999999999987
Q ss_pred ccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHH
Q 016147 94 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMI 173 (394)
Q Consensus 94 ~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~ 173 (394)
..-++..-+|+++..+++|.+.+|+.+++.++.++.... + +++ | .+....++..+.+
T Consensus 131 ~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~--------------ai~-----~---~p~i~a~i~~~~G 187 (394)
T 3txn_A 131 KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-N--------------AIY-----C---PPKVQGALDLQSG 187 (394)
T ss_dssp TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H--------------HSC-----C---CHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-c--------------cCC-----C---CHHHHHHHHHHhh
Confidence 766678999999999999999999999999999886531 1 111 1 2466788899999
Q ss_pred HHHH-hhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhh----hhhcccCcCCChhHHHHH
Q 016147 174 RYYS-HNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLN----STLEDKNLSEIPNFRLLL 248 (394)
Q Consensus 174 ~~~~-~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~----~l~~d~~l~~ip~~~~L~ 248 (394)
.++. ..++|.+|+.+|++.+.++.-.+ ...+..++++.++|.+++..-++-..++. ..+.+ ++++.+..|.
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~---pei~~l~~L~ 263 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSG---RDIDAMKSVA 263 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCS---HHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCC---ccHHHHHHHH
Confidence 9999 89999999999999987665333 34567899999999999865333322221 11333 3567788999
Q ss_pred HHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCCHHHHHHHH
Q 016147 249 KQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHL 328 (394)
Q Consensus 249 k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls~~e~E~~l 328 (394)
++|.+.++..|..+...| ...+..|++...||..|.++|++||++.+++||++|+|++||+.||+|++++|..+
T Consensus 264 ~a~~~~dl~~f~~iL~~~------~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L 337 (394)
T 3txn_A 264 EASHKRSLADFQAALKEY------KKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKL 337 (394)
T ss_dssp HHHHTTCHHHHHHHHHHS------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH------HHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHH
Confidence 999998887665543333 23456677788999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCcEEEEeccCCCEEEEecCCC-------hHHHHHHHHHHHHHHHHHHHHH
Q 016147 329 SDMVVSKALVAKIDRPQGIVCFQVAKD-------SNDILNSWAMNLEKLLDLVEKS 377 (394)
Q Consensus 329 s~MI~~g~l~akIDq~~giV~F~~~k~-------~~~~L~~W~~~I~~l~~~V~k~ 377 (394)
++||.+|+|+|+|||++|+|+|.++.+ ..+.+++|+..|+.|++...+.
T Consensus 338 ~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~~ 393 (394)
T 3txn_A 338 SQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKL 393 (394)
T ss_dssp HHHHHTTSSCEEEETTTTEEEECCC-------------------------------
T ss_pred HHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987642 3478999999999999876554
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.6e-21 Score=191.72 Aligned_cols=284 Identities=15% Similarity=0.136 Sum_probs=188.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhc---c--------cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETF---G--------AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD 134 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~---~--------~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~ 134 (394)
..+....+...|..+|.+.|.++..... + .-.....+.+.+.++|++++.+|...|+.+++++......
T Consensus 80 ~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~ 159 (393)
T 4b4t_O 80 KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK 159 (393)
T ss_dssp HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Confidence 3345567788899999999998754321 1 1123567888999999999999999999999999976543
Q ss_pred CCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCC--CChhcHHHHHHHH
Q 016147 135 ADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIK--EDPAQWMPVLRKI 212 (394)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~--~d~~~~~~~L~~a 212 (394)
.++ -......+||.+.+.||...++|-+++++....+.+.... -++.++....-.+
T Consensus 160 ~~~----------------------~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l 217 (393)
T 4b4t_O 160 KDS----------------------IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDL 217 (393)
T ss_dssp SCC----------------------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHH
T ss_pred cCC----------------------ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHH
Confidence 221 1246789999999999999999998888877766543221 1345556666789
Q ss_pred HHHHHhCCCChhchHhhhhhhcccC--cCCChhHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhHHHHH
Q 016147 213 CWYLVLAPHDPMQSSLLNSTLEDKN--LSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLR 290 (394)
Q Consensus 213 v~~~ILap~~~~rs~ll~~l~~d~~--l~~ip~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~ 290 (394)
+++++++|..+..++++.....+.. -++.+.+..|++.|...++- .|...+..+... .+....+...+.
T Consensus 218 ~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~-------~f~~~~~~~~~~--~~~l~~~~~~l~ 288 (393)
T 4b4t_O 218 SISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFD-------KFDSLIKVQISK--IPILAQHESFLR 288 (393)
T ss_dssp HHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHH-------HHHHHCCHHHHH--SHHHHHHHHHHH
T ss_pred HHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHH-------HHHHHHHHhhhh--CcchhhhHHHHH
Confidence 9999999999999999987765432 24566678899999877663 344443322111 122233344555
Q ss_pred HHHHHHHHH--HHHhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCCh----------HH
Q 016147 291 QRIIEHNIL--VVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDS----------ND 358 (394)
Q Consensus 291 ~~viEHNI~--visk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~----------~~ 358 (394)
+.+....+. +.++.|.+|+++.||+.||+|++++|..+++||..|.|.|+|||++|+|+|.+..+. .+
T Consensus 289 ~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~ 368 (393)
T 4b4t_O 289 QKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD 368 (393)
T ss_dssp HHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------------
T ss_pred HHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHH
Confidence 555555553 445789999999999999999999999999999999999999999999999864321 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016147 359 ILNSWAMNLEKLLDLVEKSCHQ 380 (394)
Q Consensus 359 ~L~~W~~~I~~l~~~V~k~~~l 380 (394)
.|+.|..++.++++.|+..+.-
T Consensus 369 ~L~~W~~~v~~l~~~ve~~~~~ 390 (393)
T 4b4t_O 369 RLVEWNDQVEKLGKKMEARGQS 390 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999887643
No 6
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.85 E-value=3.2e-22 Score=158.22 Aligned_cols=73 Identities=34% Similarity=0.503 Sum_probs=70.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCC
Q 016147 282 GAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAK 354 (394)
Q Consensus 282 ~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k 354 (394)
+.++|+.|+++|+|||++++++||++|++++||++|++|++++|+.+++||.+|+|+|+||||+|+|.|.++.
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e 77 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE 77 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999998764
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.4e-18 Score=172.54 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHH-----------HHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 61 RARLIKKLAKIKEEQGLIAEAA-----------DLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa-----------~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
-|++..-.+..+|..|+..++. .+|..+.--| -.-+..-..-.+-.++|.||..++|..|..+++|+.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~-lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS-LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCC-SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh-cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 3444455666677777766532 1222222111 123555667788899999999999999999999997
Q ss_pred ccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc-cCCCCCChhcHHHH
Q 016147 130 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE-IPYIKEDPAQWMPV 208 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~-t~~i~~d~~~~~~~ 208 (394)
|.... ... ....+|+=+.++++...++|.+|..++...+. .|.-......+..+
T Consensus 259 ---fP~~~---------------------~sn-~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a 313 (523)
T 4b4t_S 259 ---YPHTD---------------------VSS-SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQS 313 (523)
T ss_dssp ---SCTTT---------------------SCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHH
T ss_pred ---CCccc---------------------CCH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHH
Confidence 32110 112 23478888999999999999999999998875 33221122346789
Q ss_pred HHHHHHHHHhCCCChhchHhhhhhhcccCcCCChhHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhc-CCchhhhhHH
Q 016147 209 LRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNML-GGSLGAKAAE 287 (394)
Q Consensus 209 L~~av~~~ILap~~~~rs~ll~~l~~d~~l~~ip~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~-~d~~~~~~~~ 287 (394)
++.+|.+.+|.+..|+|+-+.....+. .+..|..|.++|-..++-. |...+..+...| .|. .-.-..
T Consensus 314 ~K~lI~V~LLlG~iP~r~lf~q~~l~~----~L~pY~~Lv~Avr~GdL~~-------F~~~L~~h~~~F~~Dg-ty~LI~ 381 (523)
T 4b4t_S 314 NKLHCCIQLLMGDIPELSFFHQSNMQK----SLLPYYHLTKAVKLGDLKK-------FTSTITKYKQLLLKDD-TYQLCV 381 (523)
T ss_dssp HHHHHHHHHHHTCCCCHHHHTTTSCHH----HHHHHHHHHHHHHHTCHHH-------HHHHHHHTHHHHHHTT-CTHHHH
T ss_pred HHHHHhHHhhcCCCCChHHhhchhHHH----HHHHHHHHHHHHHcCCHHH-------HHHHHHHhcceeccCC-hhHHHH
Confidence 999999999998889988665443331 2556889999998877743 444444322222 221 112246
Q ss_pred HHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCC-HHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCC---hHHHHHHH
Q 016147 288 DLRQRIIEHNILVVSKYYSRITLKRLAELLCLS-IQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD---SNDILNSW 363 (394)
Q Consensus 288 ~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls-~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~---~~~~L~~W 363 (394)
.|+..|+.++|+.+++.|++||++.+|..|+++ ++++|.++++||.+|.|.|.||+.+|+|.|....+ +.+....|
T Consensus 382 rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af 461 (523)
T 4b4t_S 382 RLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVF 461 (523)
T ss_dssp HHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHH
Confidence 678899999999999999999999999999995 78899999999999999999999999999976543 45778899
Q ss_pred HHHHHHHHHHHHHHHh
Q 016147 364 AMNLEKLLDLVEKSCH 379 (394)
Q Consensus 364 ~~~I~~l~~~V~k~~~ 379 (394)
..+|..++++-+....
T Consensus 462 ~~RI~~cl~L~ne~vk 477 (523)
T 4b4t_S 462 DERIKFANQLHDEYLV 477 (523)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887777665433
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.12 E-value=1.3e-09 Score=99.70 Aligned_cols=171 Identities=11% Similarity=0.050 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhhhhhcccCcCCCh
Q 016147 163 ELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIP 242 (394)
Q Consensus 163 d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~~l~~d~~l~~ip 242 (394)
....+|+=+.++++..+++|.+|..++.+.+.-..- .....+..+|+..|.+.+|...-|.+. ++.+ + .+ .
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~-~~~~~k~~IL~yLIp~~Ll~G~iP~~~-ll~~-~---~~---~ 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR-SSQKNKRMILIYLLPVKMLLGHMPTVE-LLKK-Y---HL---M 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTTCEECHH-HHHH-T---TC---G
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH-hHHHHHHHHHHHHHHHHHHcCCCCCHH-Hhhh-C---ch---h
Confidence 345677778889999999999999999998863221 113456788999999989987655543 3322 1 11 2
Q ss_pred hHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhHHHHHHHHHHHHHHHH----Hh--hcCcccHHHHHHH
Q 016147 243 NFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVV----SK--YYSRITLKRLAEL 316 (394)
Q Consensus 243 ~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~~~viEHNI~vi----sk--~Y~~Isl~rLa~l 316 (394)
.|..|.+++.+.++-.+..+-+.++..|.. ++.-.+-.++....+|.. .. .|++|+++.++..
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~-----------~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~ 150 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIR-----------CGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVA 150 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHH-----------HTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHH-----------CChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 488999999888885544433333333321 111122233333333333 32 5999999999999
Q ss_pred hC------CCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecC
Q 016147 317 LC------LSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVA 353 (394)
Q Consensus 317 L~------ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~ 353 (394)
|+ +|++|+|-.+++||.+|.|.|+||+.+|++.+.+.
T Consensus 151 l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 151 LKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 95 58999999999999999999999999999999874
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.8e-07 Score=95.35 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=159.7
Q ss_pred cCHHHHHHHHHHhhhhhccc-C-----------cHHHHHHHHH--HHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 76 GLIAEAADLMQEVAVETFGA-M-----------AKTEKIAFIL--EQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 76 gd~~eAa~iL~~i~vEt~~~-m-----------~~~eK~e~~L--eq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
..+++||+++.. +|+. . +.+.+.-+++ ...++|+.-+....|+.+.+-++...+- ++..
T Consensus 140 ~~le~~a~~i~k----~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~-p~~~-- 212 (455)
T 3t5v_B 140 QFLSHISSILSR----LFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSML-AHFN-- 212 (455)
T ss_dssp HHHHHHHHHHHH----HHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCC-SCGG--
T ss_pred hHHHHHHHHHHH----HHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCC-cChh--
Confidence 367889998887 4431 1 1133333333 3379999999999999999888765321 0100
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc--CCCCCC---hhcHHHHHHHHHHHH
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI--PYIKED---PAQWMPVLRKICWYL 216 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t--~~i~~d---~~~~~~~L~~av~~~ 216 (394)
.. ......+|+=+.++++..+++|.+|..++.+.+.. |.-... ...+..+|+..|.+.
T Consensus 213 ---------------~~--p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~ 275 (455)
T 3t5v_B 213 ---------------EY--QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTG 275 (455)
T ss_dssp ---------------GS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hC--CccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHH
Confidence 01 23466788888889999999999999999988864 421100 134567899999999
Q ss_pred HhCCCChhchHhhhhhhcccCcCCC-hhHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhH-HHHHHH--
Q 016147 217 VLAPHDPMQSSLLNSTLEDKNLSEI-PNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAA-EDLRQR-- 292 (394)
Q Consensus 217 ILap~~~~rs~ll~~l~~d~~l~~i-p~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~-~~L~~~-- 292 (394)
+|...-|.++- +.+.+ + ..+ |.|..|.++.-+.++-.+..+-+.++..|.. ++. -.+-.+
T Consensus 276 LLlG~~P~~~l-l~k~~-~---~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~-----------~gily~LlerLr 339 (455)
T 3t5v_B 276 LILGKMVKWGP-LRPFL-S---QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCA-----------RQLLIVLLEKLP 339 (455)
T ss_dssp HHTTCCBCHHH-HGGGS-C---HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH-----------TTCHHHHHHHHH
T ss_pred HHcCCCCCHHH-Hcccc-h---HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHH-----------cCCHHHHHHHHH
Confidence 99876677663 33332 1 233 4488899999888886555444444443322 111 112111
Q ss_pred --HHHHHHHH----HHhhc--CcccHHHHHHHhC---------------------CCHHHHHHHHHHhHhcCcEEEEecc
Q 016147 293 --IIEHNILV----VSKYY--SRITLKRLAELLC---------------------LSIQEAEKHLSDMVVSKALVAKIDR 343 (394)
Q Consensus 293 --viEHNI~v----isk~Y--~~Isl~rLa~lL~---------------------ls~~e~E~~ls~MI~~g~l~akIDq 343 (394)
|.-.=+|. .+..| ++|+++.++..|+ ++++|+|-++++||.+|.|.|+||.
T Consensus 340 ~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh 419 (455)
T 3t5v_B 340 MVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFP 419 (455)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 22111222 35568 8999999999997 5899999999999999999999999
Q ss_pred CCCEEEEecC
Q 016147 344 PQGIVCFQVA 353 (394)
Q Consensus 344 ~~giV~F~~~ 353 (394)
..|+|.+.+.
T Consensus 420 ~~~~lVlSK~ 429 (455)
T 3t5v_B 420 QLQLCVVKKT 429 (455)
T ss_dssp TTTEEEECCC
T ss_pred CCCEEEECCC
Confidence 9999999876
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.70 E-value=0.00039 Score=61.41 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCCChhchHhhhhhhcccCc--CCChhHHHHHHHhcchhcccchhhHHHHHHhhhhhhhhcCCchhhhhH
Q 016147 209 LRKICWYLVLAPHDPMQSSLLNSTLEDKNL--SEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAA 286 (394)
Q Consensus 209 L~~av~~~ILap~~~~rs~ll~~l~~d~~l--~~ip~~~~L~k~f~~~eli~~~~~~~~~~~~l~~~~~~~~d~~~~~~~ 286 (394)
...++..++.+|.--.=.+++....-. .+ ..-+.+..|++.|....+ ..|...-...+.+.
T Consensus 26 a~~li~~Al~~p~vf~F~eLL~~p~v~-~L~~~~~~~~~~LL~iF~~G~~-------~~y~~~~~~~p~L~--------- 88 (169)
T 3chm_A 26 LGPLIIEATSHPSLFAFSEILALPNVA-QLEGTTDSVYLDLLRLFAHGTW-------GDYKCNATRLPHLS--------- 88 (169)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHTCHHHH-TTTTSTTHHHHHHHHHHHHCCH-------HHHHHHGGGSCCCC---------
T ss_pred HHHHHHHHhcCCCeeehHHHhCChHHH-HhcCCChhHHHHHHHHHhcCCH-------HHHHHhHHhCcchH---------
Confidence 335666788888432224444311100 11 224557789999987644 23433212222211
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCCC-HHHHHHHHH-HhHhcCcEEEEeccCCCEEEEecCC
Q 016147 287 EDLRQRIIEHNILVVSKYYSRITLKRLAELLCLS-IQEAEKHLS-DMVVSKALVAKIDRPQGIVCFQVAK 354 (394)
Q Consensus 287 ~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~ls-~~e~E~~ls-~MI~~g~l~akIDq~~giV~F~~~k 354 (394)
..+.+.+..=-+..++.--..|+++.+++.++++ ++++|..+. +.|..|-|.|||||+++.|...+..
T Consensus 89 ~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~ 158 (169)
T 3chm_A 89 PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAA 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeec
Confidence 2333333333343344347999999999999999 999999999 9999999999999999998887643
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.56 E-value=0.0029 Score=58.41 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=119.6
Q ss_pred HHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016147 108 QVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICR 187 (394)
Q Consensus 108 q~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k 187 (394)
..+=.++.+||..|...+++++......+.. + +........+=+..|+.-+++....++. +++.
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~--------------~-p~~~~~~~~~ar~vyE~~a~~al~~~D~-~~F~ 76 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLF--------------V-PTSDKEKASFARNVFEYGVLVSIQTCDI-ESFA 76 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCS--------------S-CCSCHHHHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCC--------------C-CCCChHHHHHHHHHHHHHHHHHHHcCCH-HHHH
Confidence 3444567899999999999886422111100 0 0000111223457788878887766554 3333
Q ss_pred HHHH----HhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhhhhhcccCcCCChhHH---HHHHHhcchhcccch
Q 016147 188 CYKA----IYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFR---LLLKQLVTMEVIQWT 260 (394)
Q Consensus 188 ~y~e----i~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~~l~~d~~l~~ip~~~---~L~k~f~~~eli~~~ 260 (394)
.|.. .|.. ..... ......+..-++|.++..-.++....+..+.....+.+-|..+ .+.+.+..
T Consensus 77 ~~~~qLk~~Y~~-~~~~s-~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~------- 147 (229)
T 4b0z_A 77 RYASQVIPFYHD-SLVPS-SRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVME------- 147 (229)
T ss_dssp HHHHHHHHHHSS-CCCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHc-cCCCC-ccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHc-------
Confidence 3332 2221 12111 2345677877888888776667666666554332222334433 34444433
Q ss_pred hhHHHHHHhhhhhhhhcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhCC-CHHHHHHHHHHhHhcCcEEE
Q 016147 261 SLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCL-SIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~lL~l-s~~e~E~~ls~MI~~g~l~a 339 (394)
..|..+|...... +.+...--...|..+++..-++.+++-|.+|+++.++++||+ |+++++.++.+- | =
T Consensus 148 ---GnY~kff~l~~~~-p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w 217 (229)
T 4b0z_A 148 ---GAFDKVASMIRSC-NFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---W 217 (229)
T ss_dssp ---TCHHHHHHHHHTC-CCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---C
T ss_pred ---CCHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---C
Confidence 2355554422111 112122234567888899999999999999999999999999 588898887763 3 2
Q ss_pred EeccCCCEEEEec
Q 016147 340 KIDRPQGIVCFQV 352 (394)
Q Consensus 340 kIDq~~giV~F~~ 352 (394)
.|+ +|.|.|.+
T Consensus 218 ~i~--dg~i~F~~ 228 (229)
T 4b0z_A 218 DIR--DGVIYFPK 228 (229)
T ss_dssp EEE--TTEEECC-
T ss_pred EEe--CCEEecCC
Confidence 343 78888864
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.63 E-value=0.11 Score=41.65 Aligned_cols=142 Identities=11% Similarity=-0.104 Sum_probs=97.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQ 86 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~ 86 (394)
.......|+..+|+.. .+++....+..++. ...+.....+|.++...|++++|.+.+.
T Consensus 16 ~~~~~~~~~~~~A~~~-~~~al~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIA-HEQRLLIAKEFGDK---------------------AAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHH-HHHHHHHHHHhCCc---------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344556777777765 44555544433322 2336677889999999999999999888
Q ss_pred HhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHH
Q 016147 87 EVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKR 166 (394)
Q Consensus 87 ~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kl 166 (394)
...--....-+.......+.....++...+++..|..+.+++-...-.. +......
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~ 129 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------------------KDRIGEG 129 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------TCHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------------------------cchHhHH
Confidence 7442222233455667888899999999999999999999887543211 1123334
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 167 IYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 167 k~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..+..++..+...++|-+|...|.+...
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566677888888999998888877664
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.91 E-value=0.2 Score=39.92 Aligned_cols=112 Identities=9% Similarity=-0.081 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
..++.+-..+|.++...|++++|.+.+...---....-+.......+.....++...+++..|..+..++-...-..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--- 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---
Confidence 35678889999999999999999998876432222234556667888999999999999999999999987643221
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+........+..++..+...++|-+|...|.....
T Consensus 83 ---------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 83 ---------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11234456677778888889999999888887765
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.77 E-value=0.41 Score=44.90 Aligned_cols=111 Identities=11% Similarity=-0.081 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.....+|.++...|++++|...+...---....-+.......+.....++...|++..|..+..++-...-..+
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---- 301 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN---- 301 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC----
Confidence 3667788999999999999999988875422222334566688889999999999999999999998875432111
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
........+...+..+...++|-+|..+|......
T Consensus 302 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 302 --------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12333556677788888999999999999887753
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.40 E-value=0.41 Score=43.09 Aligned_cols=112 Identities=11% Similarity=-0.086 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
..+.....+|.++...|++++|.+.+...---....-+.......+....+++...|++..|..+.+++-...-..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---- 296 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---- 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc----
Confidence 3466778999999999999999999887542222233456678888999999999999999999999886543211
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+........+..++..+...++|-+|...|......
T Consensus 297 --------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 --------------------KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred --------------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 112233455667788888899999999999888753
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.37 E-value=0.9 Score=40.79 Aligned_cols=68 Identities=10% Similarity=-0.065 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
.+...+|.++...|++++|...+...---....-+.......+.....++...|++..|..+..++-.
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556666666666666555543211111123334444555556666666666666666655543
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.20 E-value=1.2 Score=42.14 Aligned_cols=142 Identities=13% Similarity=0.008 Sum_probs=100.2
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQ 86 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~ 86 (394)
+...-.+|+..+|+.. .+.+....+..+|. .+.+.+-..+|.+|...|++++|...+.
T Consensus 110 g~~~~~~g~~~~A~~~-~~~al~~~~~~~~~---------------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 110 GMYELDQREYLSAIKF-FKKAESKLIFVKDR---------------------IEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHTTGGGCCCH---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHH-HHHHHHHHhhCCCH---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444556666666655 45555555555543 3457777899999999999999998877
Q ss_pred HhhhhhcccCc--HHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHH
Q 016147 87 EVAVETFGAMA--KTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLEL 164 (394)
Q Consensus 87 ~i~vEt~~~m~--~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (394)
..- +.+...+ .......+.....++...|+|..|..+.+++-...-.. ++...
T Consensus 168 ~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------~~~~~ 222 (383)
T 3ulq_A 168 QAY-EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------------------KQPQL 222 (383)
T ss_dssp HHH-HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------TCHHH
T ss_pred HHH-HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------------------CChHH
Confidence 633 2333222 45567788888999999999999999999987643211 11234
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 165 KRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 165 klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
....+..++..+...++|-+|-.+|.+....
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4555667788888899999999999988863
No 18
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.19 E-value=0.36 Score=37.13 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.+..-..+|..+...|++++|...+...-- ... .-...+.....++...+++..|..+..++....-...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE-LDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--- 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc---
Confidence 3466678899999999999999999887532 111 1246778889999999999999999999876432111
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.........+..++..+...++|-+|-..|......
T Consensus 73 --------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 --------------------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 112223445666778888899999999999888864
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.98 E-value=1.4 Score=36.98 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccC--cHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM--AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m--~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
..+.....+|.++...|++++|...+...-- .+... +.......+.....++...||+..|..+..++-...-..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 140 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERE-LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-- 140 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--
Confidence 4577788999999999999999998876432 22222 334677888899999999999999999999886542111
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
+........+..++..+...++|-+|..+|.+.....
T Consensus 141 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 141 ----------------------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1123334446677788888999999999998887643
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.95 E-value=0.49 Score=44.94 Aligned_cols=111 Identities=6% Similarity=-0.136 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.....+|.+|...|++++|...+...---....-+.......+....+++...|++..|..+.+++....-..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 336 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL----- 336 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----
Confidence 456778999999999999999999876443222233455667888999999999999999999999887542211
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+........+..++..+...++|-+|...|......
T Consensus 337 -------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 -------------------GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112233455667788888999999999999888764
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.85 E-value=1.2 Score=41.51 Aligned_cols=112 Identities=10% Similarity=-0.066 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
..+.....+|.++...|++++|...+...---....-+.......+.....++...|++..|..+..++-...-..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---- 260 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---- 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC----
Confidence 4567788999999999999999998887543222233455667788899999999999999999999987543211
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+........+..++..+...++|-+|...|......
T Consensus 261 --------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 261 --------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp --------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 112344556677788888999999999999887753
No 22
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.72 E-value=0.31 Score=40.39 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCC
Q 016147 67 KLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKE 146 (394)
Q Consensus 67 ~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~ 146 (394)
.|+.++.+.|++++|...++.. .-...+....++...++|...+||..|..+.+|+-... |
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p--------- 62 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGS------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----E--------- 62 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHH------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---------
T ss_pred HhHHHHHHcChHHHHHHHHHHh------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---------
Confidence 3788888999999999877752 22345566677889999999999999999999987541 1
Q ss_pred CCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 147 GDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ...+...+..+...++|-+|-.+|..+...
T Consensus 63 -------------~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 63 -------------RD----PKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp -------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CC----HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 11 123556678888899999999999998863
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.64 E-value=2.6 Score=38.60 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHhhhhhcc-cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 62 ARLIKKLAKIKEEQ-GLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 62 a~l~~~La~i~e~~-gd~~eAa~iL~~i~vEt~~-~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+..-..+|.+|+.. |++++|...++.-- +.+. .-+...-.+.+.....+++..|+|..|..+.+++.......+.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 193 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-- 193 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT--
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc--
Confidence 55667899999997 99999998877532 1221 1123334677888999999999999999999998764321110
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..... ..++...+..+...++|-+|-.+|.....
T Consensus 194 --------------------~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 194 --------------------SQWSL-KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp --------------------TGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred --------------------ccHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 00011 12455566778888999999999998876
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.59 E-value=1.3 Score=41.81 Aligned_cols=109 Identities=8% Similarity=-0.092 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....+|.+|...|++++|...+...---....-+.......+....++++..+++..|..+..++-...-..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------ 296 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL------ 296 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------
Confidence 34556677777777777777776665322111122344455566777777777777777777777765432111
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+........+..++..+...++|-+|..+|.....
T Consensus 297 ------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 297 ------------------GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01122344555666777777777777777776654
No 25
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.13 E-value=1.3 Score=37.16 Aligned_cols=111 Identities=8% Similarity=-0.143 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.+...+|.++...|++++|...+...---....-........+.....++...+|+..|..+..++-...-..+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---- 100 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP---- 100 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----
Confidence 4667788999999999999999988774432222335567788889999999999999999999999876532111
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+........+...+..+...++|-+|...|.+...
T Consensus 101 -------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 101 -------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 01223345566677888888999999998888775
No 26
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.76 E-value=3.3 Score=38.26 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc-cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~-~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
..+.....+|.+|+. |++++|...++..- +.+. .-........+.....++...++|..|..+..++-...-..+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-- 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME-- 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--
Confidence 346677899999999 99999998887532 2222 223345578888999999999999999999999876532211
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 193 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~ 193 (394)
.......++...+..+...++|-+|-.+|....
T Consensus 190 ----------------------~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 190 ----------------------NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 011223456666677777899999999998887
No 27
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.72 E-value=1.2 Score=35.70 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.|..-..|+..+...|++++|...+...- +. ++ .-...+.....+++..++|..|....+|+-...-...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~----~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--- 76 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-EL----DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR--- 76 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc---
Confidence 456667889999999999999999887522 11 11 1256788889999999999999999998865321111
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.......+-|..++..+...++|-+|..+|.....
T Consensus 77 --------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 77 --------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11233344566677888889999999999988775
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.68 E-value=4.8 Score=38.00 Aligned_cols=165 Identities=7% Similarity=-0.112 Sum_probs=111.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhh--------------------hcCCcchHHHHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNS--------------------VSAGKIYVEIERARLI 65 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~--------------------vt~gki~~E~era~l~ 65 (394)
.+...-.+|+..+|+.. .+++....+.++|......+...|.. +.+..--.....+.+.
T Consensus 107 ~g~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGY-YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHH-HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHH-HHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 45556678999999987 67788888777775333222221111 1111111233567788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..||.+|...|++++|.+.+...---....-+.......+.....++...|++..|..+.+++-...-..
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------- 255 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------- 255 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh----------
Confidence 8999999999999999998876332111222445667788889999999999999999999987632110
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
+.... ...+...+..+...++|-+|...|.......
T Consensus 256 --------------~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 256 --------------VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp --------------CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11122 4455667788888999999999999888754
No 29
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.53 E-value=1.3 Score=33.16 Aligned_cols=99 Identities=15% Similarity=0.054 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.....+|..+...|++++|.+.+...--.... -...+.....++...+++..|..+.+++.... |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~--- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----P--- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T---
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----c---
Confidence 4566678999999999999999998875422111 15678888999999999999999999887541 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|...|......
T Consensus 70 -------------------~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 -------------------DW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------------cc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 11 123445566777889999999999888863
No 30
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.38 E-value=4.2 Score=36.99 Aligned_cols=113 Identities=6% Similarity=-0.107 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
.........++.++...|++++|...+...--......+.......+.....++...++|.+|..+.+|+-...-..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-- 189 (293)
T 2qfc_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-- 189 (293)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--
Confidence 345555677999999999999999988764322222334444677888999999999999999999999875321111
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+........+...+..+...++|-+|-.+|.....
T Consensus 190 ---------------------~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 190 ---------------------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11223335566777888889999999999887775
No 31
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.30 E-value=0.79 Score=43.91 Aligned_cols=109 Identities=9% Similarity=-0.028 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.+...++.++...|++++|.+++.....-+...-............++++...|+|..|..+..++.......+
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----- 169 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----- 169 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-----
Confidence 344566777888889999998887765432322333345677888889999999999999999998865432211
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+...+..++...++.|...++|-.|-..|..+..
T Consensus 170 -------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 170 -------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp -------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1245678899999999999999999888887764
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.16 E-value=3.2 Score=34.41 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.+-..||.+|...|++++|.+.++..-- ... .-.+.+.....++...+++..|.....++......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-ADP-----NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------ 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------
Confidence 355667899999999999999998887431 111 12467888899999999999999999888653210
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
. ...+...+..+...++|-++...|......
T Consensus 72 --------------------~----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 72 --------------------S----AEAYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp --------------------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 122445566777788888888888887753
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=93.13 E-value=2 Score=38.34 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc--cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~--~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
..+.....+|.++...|++++|...+...---... .-+.......+....+++...+++..|..+..++-...-...+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677789999999999999999988874421111 1233556778888999999999999999999998764221100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.........+..++..+...++|-+|...|.+...
T Consensus 189 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 ----------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00122345566777888889999999999988875
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.12 E-value=3 Score=35.97 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
....+...+|.++...|++++|.+.+...---. .. -...+.....++...+++..|..+.+++-... |
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~-- 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD----P-- 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----H--
Confidence 456777899999999999999999988754211 11 14678888999999999999999999986531 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+. ...+..++..+...++|-+|...|.....
T Consensus 205 --------------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 205 --------------------NF----VRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------HH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12355667788888999998888887775
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.97 E-value=2.8 Score=38.74 Aligned_cols=95 Identities=7% Similarity=0.024 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
..+...+|.++...|++++|.+.+.. + .-.+.++..+++++..|++..|....+++.... |.
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-~----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~--- 162 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-G----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQD----ED--- 162 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-C----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-C----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cC---
Confidence 44578899999999999999998876 1 224677888999999999999999999987541 10
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+....+......++...++|-+|...|.++...
T Consensus 163 ---------------------~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 163 ---------------------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 111222233334455668999999999998874
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.97 E-value=2.2 Score=37.26 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhc--ccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF--GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~--~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
..+.....||.++...|++++|.+.+....--.- +.-+.......+.....++...+++..|..+..++-...-...+
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567788999999999999999998887542211 11223566788999999999999999999999998764211100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.........+..++..+...++|-+|...|.++..
T Consensus 163 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 ----------------------PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00122344566677888889999999999888775
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.91 E-value=0.49 Score=39.16 Aligned_cols=95 Identities=11% Similarity=-0.082 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.......||.+|...|++++|.+.+...--- ++ .-.+.+.....++...+++..|....+++-.. +|
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----~p-- 96 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QE-RDPKAHRFLGLLYELEENTDKAVECYRRSVEL----NP-- 96 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT--
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CC--
Confidence 44555578999999999999999988764311 11 12467788889999999999999999998754 11
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYK 190 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ 190 (394)
+..+. +...+..+...++|-++++.|.
T Consensus 97 --------------------~~~~~----~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 97 --------------------TQKDL----VLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp --------------------TCHHH----HHHHHHHHHHHCSSSSHHHHHH
T ss_pred --------------------CCHHH----HHHHHHHHHHcCChHHHHHHHH
Confidence 11222 3344566666777777777764
No 38
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.81 E-value=2.1 Score=34.44 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.+..-..+|..+...|++++|.+.+...--... .-.+.+.....++...++|..|..+..++-... |
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~-- 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD----K-- 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----c--
Confidence 5677778999999999999999998887442211 125678888999999999999999999887542 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+..++..+...++|-+|...|......
T Consensus 79 --------------------~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 79 --------------------KY----IKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp --------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------cc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 123455667788889999999999888763
No 39
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.78 E-value=4 Score=38.53 Aligned_cols=112 Identities=8% Similarity=-0.120 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
..+.+-..||.+|...|++++|.+.+...---....-+.......+.....++...||+.+|..+.+++-...-..+.
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-- 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-- 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--
Confidence 457778899999999999999999887643211122345566778888999999999999999999998764221110
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.... ..-+...+..+...++|-+|-.+|......
T Consensus 260 ---------------------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 260 ---------------------LPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp ---------------------GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------chhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0111 344566678888889999999999887753
No 40
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.44 E-value=2.5 Score=38.55 Aligned_cols=138 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred CCCChHHHHHHHHHhh----hhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHH
Q 016147 33 QTPDLDTRIELIKTLN----SVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQ 108 (394)
Q Consensus 33 ~~~d~~~k~~~i~~L~----~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq 108 (394)
..|+.+.=.++.+.|. .+..+...-+.+....-...+..+...|++++|.+.+..+.-.....-+....+.++..+
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 121 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV 121 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 3566655555555443 222333332334444445567788899999999999988654222111223346677778
Q ss_pred HHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 016147 109 VRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRC 188 (394)
Q Consensus 109 ~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~ 188 (394)
.-+++..+++..|..+.+++-......+ +.......+..++..|...++|-+|-.+
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~------------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 177 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGI------------------------DVYQNLYIENAIANIYAENGYLKKGIDL 177 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCS------------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccc------------------------cHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889999999999999999976432211 1123345577778888889999999999
Q ss_pred HHHHhc
Q 016147 189 YKAIYE 194 (394)
Q Consensus 189 y~ei~~ 194 (394)
|..+..
T Consensus 178 ~~~al~ 183 (293)
T 3u3w_A 178 FEQILK 183 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998884
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.19 E-value=2 Score=32.96 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
...-..+|..+...|++++|.+.+...--.. + .-.+.+.....++...+++..|..+..++.... +
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~---- 81 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----P--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE----P---- 81 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----T--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----C----
Confidence 3445778999999999999999988743211 1 125778889999999999999999999887541 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.. ...+..++..+...++|-+|...|.....
T Consensus 82 ------------------~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 82 ------------------TF----IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------Cc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12344566777888999999999988875
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.10 E-value=2.5 Score=34.70 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.+..-..+|..+...|++++|...+...--- .. .-..++.....+++..++|..|.....++-... |
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p-- 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI-AP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD----P-- 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--
Confidence 45677789999999999999999988874321 11 125678888999999999999999999987541 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|-.+|......
T Consensus 77 --------------------~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 77 --------------------KY----SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp --------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 11 233555667788889999999999988863
No 43
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.98 E-value=0.8 Score=43.92 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..+|.+++..|++++|.+++... + +.-+...-++.++..+++++..|+...|...+++.... ++..
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~-i---~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~----~~d~------ 169 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEG-I---DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA----IEDT------ 169 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-H---TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-h---ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----Cccc------
Confidence 68999999999999999999873 1 11112478999999999999999999999999887542 1000
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
.| ......+..-+..+.+....++|-+|...|.++.+.+
T Consensus 170 -~~-----------~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 170 -VS-----------GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp -HH-----------HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred -cc-----------cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 00 0123333333343344444459999999999998754
No 44
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.87 E-value=3.4 Score=32.36 Aligned_cols=102 Identities=8% Similarity=-0.066 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.....+|..+...|++++|.+.+....-. .-+.......+.....++...++|..|..+..++.... |
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~--- 96 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----G--- 96 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----S---
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----c---
Confidence 3556688999999999999999998875421 11233457888999999999999999999999886541 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|...|......
T Consensus 97 -------------------~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 -------------------GD----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11 123445567777889999999999888763
No 45
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=91.65 E-value=3.7 Score=31.81 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+..-..+|..+...|++++|...+...--- .. .-...+.....+++..++|..|.....++-... |
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p--- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-AP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----P--- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C---
Confidence 4566688999999999999999988764321 11 114778888999999999999999999987541 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+. ...+...+..+...++|-+|-..|.....
T Consensus 70 -------------------~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 70 -------------------NF----VRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp -------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------Cc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 11 12344566777888999999998887775
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.48 E-value=0.99 Score=40.43 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc--cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~--~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
+.++.-..+|..+...|++++|...+....--... .-+.......+.....++...+++..|..+..++-...-...+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 56778889999999999999999998875432111 1145667888999999999999999999999988754211000
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.........+..++..+...++|-+|...|......
T Consensus 105 ----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 105 ----------------------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 011233456677788888899999999999888753
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.36 E-value=2.7 Score=33.49 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh-hhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccC
Q 016147 56 YVEIERARLIKKLAKIKEEQGLIAEAADLMQEVA-VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD 134 (394)
Q Consensus 56 ~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~-vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~ 134 (394)
++.=+.|..-..++..|...|++++|.+.+...- .+. .-.+.+.....++...|++..|....+|+-..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 3445667777889999999999999999887632 211 12567888899999999999999999998653
Q ss_pred CCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 135 ADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+| +. ...+...+..+...++|-+|..+|..+...
T Consensus 77 -~p----------------------~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 77 -DS----------------------KF----IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -CT----------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hh----------------------hh----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 11 123555667788899999999999988863
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=91.07 E-value=1.5 Score=38.34 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhccc--CcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA--MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~--m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
..+.+...||.++...|++++|...+...---.... -+.......+.....++...+++..|..+..++-...-...+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 567788899999999999999999888744211111 233566788889999999999999999999998764211100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.........+..++..+...++|-+|-..|......
T Consensus 121 ----------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 121 ----------------------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ----------------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001122455666778888899999999988888764
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.05 E-value=6.8 Score=33.59 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhccc-CcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA-MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~-m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
.....+|.++...|++++|.+.+...---.... -+.......+.....++...+++..|..+.+++....-........
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 456788999999999999999888743211111 1333447889999999999999999999999887631100000000
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
...+++........ .........+...+..+...++|-+|-..|..+...
T Consensus 119 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 119 RNAEKELKKAEAEA----YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 00000000000000 000111234555667777888898888888888763
No 50
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.00 E-value=9.9 Score=36.04 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhccc------CcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCC
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA------MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDA 135 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~------m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~ 135 (394)
......+|.+|...|++++|...+....--.... +..-.+.+-.+..+..+...+++..|..+..++....
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--- 287 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--- 287 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 4556788999999999999999888764211111 1111233344666899999999999999999986531
Q ss_pred CCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 136 DPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
| ...+.....+..++..+...++|-+|-..|......
T Consensus 288 -p----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 288 -P----------------------SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp -C----------------------SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -C----------------------cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 223444566778888889999999999999988753
No 51
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.92 E-value=4.1 Score=31.67 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....+|..+...|++++|...+...--- ... -.+++.....++...++|..|.....++.... |
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p---- 74 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR-NPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELD----G---- 74 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-CcC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----c----
Confidence 456678999999999999999988864321 111 14678888999999999999999999987541 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+. ...+...+..+...++|-+|-..|.....
T Consensus 75 ------------------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 75 ------------------QS----VKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------hh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12345566777788899888888887764
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.74 E-value=4.8 Score=35.28 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCC
Q 016147 65 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 144 (394)
Q Consensus 65 ~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~ 144 (394)
...+|..+...|++++|.+.+....-..... .+.+.....++...+++..|..+..++-... .+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------- 69 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNS------PYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NA-------- 69 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC------STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CT--------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cc--------
Confidence 4578889999999999999888754221111 2356777888999999999999999887521 11
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.+.....+...+..+...++|-+|-..|..+...
T Consensus 70 -----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 70 -----------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp -----------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 1112233556677788889999999999888863
No 53
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=90.70 E-value=10 Score=34.86 Aligned_cols=110 Identities=9% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccC-cHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAM-AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m-~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
..+..-..++.+|...|++++|...+...- +.+... +...-...+.....++.. +|+.+|..+.+++-...-..
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--- 148 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--- 148 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---
Confidence 456777889999999999999998887532 223222 334456778888899988 99999999999987653211
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+........+.-.+..+...++|-+|..+|......
T Consensus 149 ---------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 149 ---------------------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112233455667778888899999999999988863
No 54
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.36 E-value=4.4 Score=30.24 Aligned_cols=98 Identities=18% Similarity=0.093 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....+|..+...|++++|.+.+....-... .-...+.....++...+++..|..+.+++.... +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~---- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P---- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----C----
Confidence 45567899999999999999999887543211 124567788999999999999999999886531 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+.. ..+...+..+...++|-+|-..|..+...
T Consensus 75 ------------------~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 75 ------------------NNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------ccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 111 12345567777888999999988888763
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=90.14 E-value=8.3 Score=33.07 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
....+|..+...|++++|.+.+...--. ++ .-...+.....++...+|+..|....+++-...-. +
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~------- 109 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKK-----NY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-N------- 109 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C-------
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh-----Cc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-c-------
Confidence 3455899999999999999988764311 11 24567888999999999999999999998764211 0
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+.........+...+..+...++|-+|-..|..+..
T Consensus 110 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 110 ---------------ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 112233345677788888999999999999999986
No 56
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.00 E-value=4.2 Score=34.48 Aligned_cols=107 Identities=14% Similarity=-0.088 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc-c------C---cHHHHHHHHHHHHHHHhccCChHHHHHHHHhh
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-A------M---AKTEKIAFILEQVRLCLDRQDYVRAQILSRKI 128 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~-~------m---~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki 128 (394)
.+.+.....+|..+...|++.+|...+...---... . . ....+...+.....+++..++|..|..+..++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345666788999999999999999988865321101 1 0 11223578888999999999999999999998
Q ss_pred CccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 129 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
-... | .. .+.+...+..+...++|-+|-..|......
T Consensus 115 l~~~----p----------------------~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 115 LKID----K----------------------NN----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHS----T----------------------TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhC----c----------------------cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 7541 1 11 123445567778889999998888887753
No 57
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=89.84 E-value=7.3 Score=32.00 Aligned_cols=98 Identities=5% Similarity=-0.029 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHH-HhccCCh--HHHHHHHHhhCccccCCCCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL-CLDRQDY--VRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL-~L~~~D~--~~a~~~~~Ki~~~~~~~~~~ 138 (394)
......+|.+|...|++++|...+...---... -...+.....+ +...+++ ..|..+..++.... |
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~----p- 112 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALD----S- 112 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC----T-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC----C-
Confidence 346688999999999999999988874321111 14567777787 8889998 99999999887541 1
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
... ..+...+..+...++|-+|...|..+...
T Consensus 113 ---------------------~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 113 ---------------------NEI----TALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ---------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------------CcH----HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 111 22445567777889999999999888764
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=89.77 E-value=8.4 Score=33.25 Aligned_cols=98 Identities=8% Similarity=-0.113 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.+...+|..+...|++++|.+.+....-... .-.+.+...+.++...+|+..|..+..++.... +
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~--- 102 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP------SSADAHAALAVVFQTEMEPKLADEEYRKALASD----S--- 102 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----c---
Confidence 477778888889999999999888876542211 114567777888888999999998888876431 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.. ...+...+..+...++|-+|-..|..+..
T Consensus 103 -------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 103 -------------------RN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp -------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -------------------Cc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 01 12244555667778888888888888876
No 59
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=89.58 E-value=4.6 Score=36.71 Aligned_cols=110 Identities=6% Similarity=-0.099 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+..-..++.++...|++++|...+...--.....-+....+..+.....++...|+|.+|..+.+|+-...-..+
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~----- 189 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----- 189 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----
Confidence 445556899999999999999988876543333333345677888899999999999999999999975432110
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.........+.-.+..|...++|-+|-..|.....
T Consensus 190 ------------------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 190 ------------------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12344456677777888889999999998887775
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.32 E-value=5.6 Score=29.92 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
...+.....+|..+...|++++|...+...--.... -...+.....++...+++..|..+..++.... |
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~- 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID----P- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----c-
Confidence 455677788999999999999999988875422111 15677888999999999999999999987541 1
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|...|......
T Consensus 78 ---------------------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 78 ---------------------AY----SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ---------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------cC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 11 123455667788899999999999888764
No 61
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.28 E-value=4.2 Score=31.21 Aligned_cols=101 Identities=8% Similarity=-0.110 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCC
Q 016147 65 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKP 144 (394)
Q Consensus 65 ~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~ 144 (394)
...+|..+...|++++|.+.+..+.-...+ .....+.++....++...|||..|..+..++-...-. .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~-------- 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-H-------- 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-S--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-C--------
Confidence 356889999999999999999876432111 1233467788899999999999999999998754211 0
Q ss_pred CCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 145 KEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ....+...+..+...++|-+|-..|..+...
T Consensus 73 --------------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 --------------DK----AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp --------------TT----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------cc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00 0112334556677889999999988888763
No 62
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.24 E-value=4.4 Score=33.08 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhc-----ccCc-------HHHHHHHHHHHHHHHhccCChHHHHHHHHh
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF-----GAMA-------KTEKIAFILEQVRLCLDRQDYVRAQILSRK 127 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~-----~~m~-------~~eK~e~~Leq~rL~L~~~D~~~a~~~~~K 127 (394)
+.+..-..+|..+...|++.+|...+...---.. ..-+ .......+......++..++|..|.....+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4566678899999999999999987765321100 0000 445667889999999999999999999999
Q ss_pred hCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 128 ISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+-.. +|. . .+.+-..+..+...++|-+|-..|.....
T Consensus 89 al~~----~p~----------------------~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 89 VLKR----EET----------------------N----EKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHH----STT----------------------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhc----CCc----------------------c----hHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 8653 111 1 12344556777888999999998888775
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=89.18 E-value=5.9 Score=31.84 Aligned_cols=62 Identities=10% Similarity=-0.113 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
.+...+|.++...|++++|.+.+....--. . .-...+...++++...+++..|..+.+++-.
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-P-----INFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-c-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 344566777777777777777666543211 0 1134566667777777777777777776654
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=88.98 E-value=9.9 Score=32.33 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
.....+|.++...|++++|.+.+....--. . .....+...++++...+++..|..+.+++..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELD-S-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-----cchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556667777777777776666543211 1 1234555666666777777777776666654
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.92 E-value=9.1 Score=36.02 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
......+|..+...|++++|...+....--....-+.....+++.....++...+++..|..+..++-..+-..+
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----- 175 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP----- 175 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----
Confidence 345566788889999999999988764321112345678899999999999999999999999999876542211
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+.......-+..++..+...++|-+|-.+|......
T Consensus 176 ------------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 176 ------------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 101223455667778888899999999999888864
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.92 E-value=9.3 Score=31.91 Aligned_cols=98 Identities=10% Similarity=-0.064 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
.+.+...+|..+...|++++|.+.+....-.... -.+.+.....++...+++..|..+..++.... |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~--- 73 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK----P--- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----C---
Confidence 4566788999999999999999988875422111 14567778889999999999999998886531 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN-NDYLEICRCYKAIYE 194 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~-~~flea~k~y~ei~~ 194 (394)
... ..+...+..+... ++|-+|-..|..+..
T Consensus 74 -------------------~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 74 -------------------DSA----EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp -------------------TCH----HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -------------------CCh----HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 111 1244556777778 999999999998887
No 67
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.69 E-value=4 Score=29.97 Aligned_cols=96 Identities=9% Similarity=-0.039 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..+|..+...|++++|...+...---... -.+.+.....++...+++..|..+.+++....-
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------------ 71 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE------------ 71 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc------------
Confidence 56888999999999999988764321111 135678889999999999999999998875311
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN-NDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~-~~flea~k~y~ei~~t 195 (394)
. +.....+...+..+... ++|-+|-.+|..+...
T Consensus 72 --------------~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 --------------D--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp --------------C--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred --------------c--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 1 00012345566777888 8999999988888764
No 68
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.58 E-value=13 Score=33.35 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=98.2
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhccCCC--------------ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYIDQTP--------------DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIK 72 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~~~~--------------d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~ 72 (394)
..+.-+.|+..+|+.. .+.+...-+..+ +.+.-+..++......+.. ......+|.++
T Consensus 127 a~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~ 198 (359)
T 3ieg_A 127 ALDAFDGADYTAAITF-LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN-------TEAFYKISTLY 198 (359)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-------HHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHH-HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHH
Confidence 3455677888888766 444444332211 2222222222222233332 34667899999
Q ss_pred HHhcCHHHHHHHHHHhhhhhcccC-------cHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 73 EEQGLIAEAADLMQEVAVETFGAM-------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 73 e~~gd~~eAa~iL~~i~vEt~~~m-------~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
...|++++|...+....- ..... ..-.++...+..+.+++..+++..|..+..++.... |
T Consensus 199 ~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-------- 265 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----P-------- 265 (359)
T ss_dssp HHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C--------
T ss_pred HHcCCHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--------
Confidence 999999999998887542 11111 112234445667889999999999999999887542 1
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.........+..++..+...++|-+|...|......
T Consensus 266 --------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 266 --------------SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp --------------SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 123444555667788888999999999999988864
No 69
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=88.48 E-value=7.2 Score=35.38 Aligned_cols=110 Identities=10% Similarity=0.008 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
...-....+..+...|++++|.+.+...--.....-.....+.++.....++...+|+..|..+.+++-.......
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---- 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---- 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC----
Confidence 3334456778889999999999988753321111112335566677788889999999999999999865432211
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
........+..++..|...++|-+|-.+|..+..
T Consensus 150 --------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 150 --------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112355677788888889999999999998874
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.37 E-value=8.9 Score=35.22 Aligned_cols=100 Identities=5% Similarity=-0.005 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
..+...++.++...|++++|.+.+..+.-.. ++..-..+..--+.++...+++..|..+.+++.... |
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p---- 197 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----S---- 197 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----C----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----C----
Confidence 3466788999999999999999998865321 111112222223455667789999999999987641 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+..++..+...++|-+|-..|.++...
T Consensus 198 ------------------~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 198 ------------------PT----LLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp ------------------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 123566778889999999999999998874
No 71
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.34 E-value=8.4 Score=30.71 Aligned_cols=99 Identities=8% Similarity=-0.098 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
........+|..+...|++++|...+...---. . .-.+++.....++...++|..|.....++-... |.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~- 84 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--H----YDARYFLGLGACRQSLGLYEQALQSYSYGALMD----IN- 84 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT-
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--C----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CC-
Confidence 344556789999999999999999988754211 1 124567788999999999999999999987541 11
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..+ .+...+..+...++|-+|...|.....
T Consensus 85 ---------------------~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 85 ---------------------EPR----FPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ---------------------CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 234556777888999999998887765
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.34 E-value=6.6 Score=29.47 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
....+|..+...|++++|.+.+....-.... -...+...+.++...+++..|..+..++.... +
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----C------
Confidence 3467889999999999999998875422111 13466777889999999999999999876431 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
... ..+...+..+...++|-+|-+.|......
T Consensus 67 ----------------~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 67 ----------------RSA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp ----------------TCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ----------------Cch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 111 12344566777788898888888877753
No 73
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=88.27 E-value=8.4 Score=31.40 Aligned_cols=99 Identities=12% Similarity=-0.056 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
........+|..+...|++++|...+...---.. .-.+++.....++...++|..|....+++-... |.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~- 87 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IX- 87 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TT-
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CC-
Confidence 3455667899999999999999998886432111 124566778889999999999999999986541 11
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..+ .+-.++..+...++|-+|-.+|.....
T Consensus 88 ---------------------~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 ---------------------EPR----FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp ---------------------CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------Cch----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 234456777888999999998888775
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.20 E-value=6.7 Score=29.41 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
....+|.++...|++++|.+.+....-- ... -...+.....++...+++..|..+..++.... +
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~------ 100 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P------ 100 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----T------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C------
Confidence 4467899999999999999998875421 111 13466778899999999999999998876531 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
... ..+...+..+...++|-+|...|.+...
T Consensus 101 ----------------~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 101 ----------------RSA----EAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ----------------TCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ----------------CCh----HHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 011 1234456777778888888888877664
No 75
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.97 E-value=7.3 Score=29.60 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=48.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec--cCCCEEEEecCCChHHHHHHHHHHHHHHHHH
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID--RPQGIVCFQVAKDSNDILNSWAMNLEKLLDL 373 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID--q~~giV~F~~~k~~~~~L~~W~~~I~~l~~~ 373 (394)
...+|...||+.+|+|..-+-..+..|...|-|...-| +..+.+... ....+.+..+...+..+.+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~~~~ 100 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGEIER 100 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999976554 333343333 33445665555555554443
No 76
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=87.76 E-value=0.88 Score=34.00 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=44.0
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
-=+-+.++.||.-||++.+++-.-|-.+..+|+|.|-||-....|.-.+
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 3466899999999999999999999999999999999999888877654
No 77
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=87.67 E-value=15 Score=32.96 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
....+|..+...|++++|.+.+....-. ..-+.......+.....++...|++..|..+..++-... |
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~------ 303 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----P------ 303 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----c------
Confidence 3456799999999999999999875432 222445566778888999999999999999999887541 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|...|......
T Consensus 304 ----------------~~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 304 ----------------DN----VNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp ----------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----------------cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 124556678888899999999999998864
No 78
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=87.55 E-value=8.5 Score=30.59 Aligned_cols=64 Identities=6% Similarity=-0.203 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|.++...|++++|...+...--- .. .-...+.....++...|++..|..+..++-..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIEL-DK-----KYIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456778999999999999999988764321 11 11457788899999999999999999998754
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=87.15 E-value=10 Score=30.36 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKE 140 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~ 140 (394)
++..-..+|..+...|++++|...+....-.. + .-...+...+.++...+++..|..+.+++.... |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~--- 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----A--FDVDVALHLGIAYVKTGAVDRGTELLERSLADA----P--- 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----S--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----c--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C---
Confidence 46667889999999999999999887643211 1 125677788999999999999999999886541 1
Q ss_pred cCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 141 KKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
... ..+...+..+...++|-+|-..|..+...
T Consensus 74 -------------------~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 74 -------------------DNV----KVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp -------------------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------CCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 111 22445667778889999999999888763
No 80
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.94 E-value=7.2 Score=37.53 Aligned_cols=106 Identities=15% Similarity=-0.002 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc----------cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG----------AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~----------~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
+.+.....+|..+...|++++|.+.+...---... .-........+.....+++..++|..|..+.+++-
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45666788999999999999999887764320000 00234567889999999999999999999999987
Q ss_pred ccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 130 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. +|. .. +.+-..+..+...++|-+|...|......
T Consensus 301 ~~----~p~------------------------~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 301 EI----DPS------------------------NT--KALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT----CTT------------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hh----Cch------------------------hH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 53 111 11 22444556777788999998888887753
No 81
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.60 E-value=9.7 Score=35.77 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhccc--Cc-------HHHHHHHHHHHHHHHhccCChHHHHHHHHhh
Q 016147 58 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGA--MA-------KTEKIAFILEQVRLCLDRQDYVRAQILSRKI 128 (394)
Q Consensus 58 E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~--m~-------~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki 128 (394)
.-..+.....+|..+...|++++|...+...---.... .+ ...+...++....+++..++|..|..+.+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567788899999999999999999887633211111 11 2234688899999999999999999999999
Q ss_pred CccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 129 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
-... | +. .+.+...+..+...++|-+|-..|..+...
T Consensus 223 l~~~----p----------------------~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 223 LELD----S----------------------NN----EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHC----T----------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC----C----------------------Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7641 1 11 123445567778889999999999888763
No 82
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=86.33 E-value=27 Score=34.43 Aligned_cols=102 Identities=9% Similarity=-0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc-cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~-~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
.....++.+|...|++++|.+.+....--... ..++..-...+...+.++...|++..|..+.+++.... |
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p---- 547 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----T---- 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----S----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C----
Confidence 34566778888888888888877764321111 22333336677777888888888888888888776431 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+. ...+...+..+...+++-+|...|..+..
T Consensus 548 ------------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 548 ------------------ND----ANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp ------------------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 01 12355666777778888888888887775
No 83
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=86.10 E-value=18 Score=32.17 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 104 FILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 104 ~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
.+.....++...|++..|..+.+++.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=86.06 E-value=18 Score=38.32 Aligned_cols=164 Identities=20% Similarity=0.116 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+..-..||.+|.+.|++++|.+.++..- +.... -.+.+.....++...|++..|....+|+-.. +|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P---- 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SP---- 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC----
Confidence 4556789999999999999998877532 11111 1356677788899999999999999988653 11
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCC
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPH 221 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~ 221 (394)
+.. ..+...+..+...++|-+|-.+|....... |.........+.+|.-+.-+
T Consensus 75 ------------------~~~----~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-----P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 75 ------------------TFA----DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-----PAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCH
Confidence 111 224556677788899999999998887632 22211222222333333222
Q ss_pred ChhchHhhhhhhcccCcCCChhHHHHHHHhcchhcccchhhHHHHHHhh
Q 016147 222 DPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEF 270 (394)
Q Consensus 222 ~~~rs~ll~~l~~d~~l~~ip~~~~L~k~f~~~eli~~~~~~~~~~~~l 270 (394)
..-...+-+.+..+|. ....+..|..++. .+-+|++..+.|...+
T Consensus 128 ~eAi~~~~~Al~l~P~--~~~a~~~L~~~l~--~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 128 PEAIASYRTALKLKPD--FPDAYCNLAHCLQ--IVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHHHCSC--CHHHHHHHHHHHH--HTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--ChHHHhhhhhHHH--hcccHHHHHHHHHHHH
Confidence 2222222233334542 2334555655553 3556666555555444
No 85
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=85.54 E-value=24 Score=33.20 Aligned_cols=98 Identities=12% Similarity=-0.011 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..++..+...|++++|...+...--- ..-+.....+.+...+.++...|++..|..+.+++.... |
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----p-------- 326 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME----P-------- 326 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----T--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----c--------
Confidence 45699999999999999999875421 222445557788888999999999999999999886531 1
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ...+...+..+...++|-+|...|......
T Consensus 327 --------------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 327 --------------DN----VNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp --------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------------cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 123556667778899999999999999863
No 86
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=85.48 E-value=0.89 Score=41.59 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhcCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 288 DLRQRIIEHNILVVSKYYSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 288 ~L~~~viEHNI~visk~Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
.|...|+..-..++++-|++|+++.++++| +++++++++.+.+- | =++| .+|.|.|..
T Consensus 133 gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~---G---W~vd-~~g~I~~~n 191 (226)
T 1rz4_A 133 GFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY---G---WSAD-ESGQIFICS 191 (226)
T ss_dssp THHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH---T---CEEC-C--CEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC---C---CEEC-CCccEEeCC
Confidence 367778888888999999999999999999 58999999888762 3 1244 677887743
No 87
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=85.23 E-value=3.3 Score=31.42 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=50.1
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEe---ccCCCEEEEecCCChHHHHHHHHHHHHHHHHHH
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLV 374 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akI---Dq~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V 374 (394)
..+|+..||+.+|+|..-+-..+..|...|-+...- |++...+.... ...+.+..|...+..+.+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~--~g~~~~~~~~~~~~~~~~~~ 98 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD--FGMEEAKRFLSSLKAVIDGL 98 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH--HHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999998766 55544444432 22356677776666665543
No 88
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.19 E-value=20 Score=31.83 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
..+...+|.++...|++++|.+.+...---. . .-.+.+...+.++...+++..|..+..++-... |
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~---- 237 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR-P-----DDAQLWNKLGATLANGNRPQEALDAYNRALDIN----P---- 237 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C----
Confidence 4667889999999999999999888754211 1 113567888999999999999999999886431 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+.. ..+...+..+...++|-+|...|.....
T Consensus 238 ------------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 238 ------------------GYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp ------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 1244556777788999999888887765
No 89
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=84.52 E-value=18 Score=33.28 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccC
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~ 142 (394)
.+...++.++...|++++|...+....--..... ....+.....++...|++..|..+.+++-... |
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p----- 244 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----P----- 244 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C-----
Confidence 3444568899999999999998887543211111 24567788999999999999999999987541 1
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 143 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ...+...+..+...++|-+|-..|......
T Consensus 245 -----------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 245 -----------------ED----YSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp -----------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 123556677788899999999999988863
No 90
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.43 E-value=8.8 Score=35.86 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH--h-cc--CCCCCChhcHHHHHHHHHHHHHhCCCChhchHhhhhhhcc-cCcC
Q 016147 166 RIYYELMIRYYSHNNDYLEICRCYKAI--Y-EI--PYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLED-KNLS 239 (394)
Q Consensus 166 lk~~~~~~~~~~~~~~flea~k~y~ei--~-~t--~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll~~l~~d-~~l~ 239 (394)
+..|+..+++....+|+-+=-+|+-.+ + .. ...... ......+..-++|++...-..+=...|..+-.. +.+.
T Consensus 59 r~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s-~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~ 137 (274)
T 4b4t_T 59 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSES-DKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLE 137 (274)
T ss_dssp --CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCS-HHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHh
Confidence 357888888888888775433333222 2 11 112222 234566666667766544333333344444322 2344
Q ss_pred CChhHHH---HHHHhcchhcccchhhHHHHHHhhhhhhh-hcCCchhhhhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 016147 240 EIPNFRL---LLKQLVTMEVIQWTSLWNTYKDEFENETN-MLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAE 315 (394)
Q Consensus 240 ~ip~~~~---L~k~f~~~eli~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~L~~~viEHNI~visk~Y~~Isl~rLa~ 315 (394)
+-|..+- +.+.+.. ..|..+|.-... -...+...--...+-.+++..-+..+.+-|.+|+++.+++
T Consensus 138 ~d~~Ik~al~le~al~e----------GnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~ 207 (274)
T 4b4t_T 138 DDSLLSYPIKLDRWLME----------GSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKA 207 (274)
T ss_dssp CCHHHHHHHHHHHHHHH----------TCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred cChHHHHHHHHHHHHHc----------CCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 4555542 3333322 235555431100 0001111112356788899999999999999999999999
Q ss_pred HhCC-CHHHHHHHHHH
Q 016147 316 LLCL-SIQEAEKHLSD 330 (394)
Q Consensus 316 lL~l-s~~e~E~~ls~ 330 (394)
+|+. |++++..++.+
T Consensus 208 ~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 208 LLFFNNEKETEKFALE 223 (274)
T ss_dssp HHTCCSHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHH
Confidence 9999 56777766544
No 91
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=84.31 E-value=15 Score=33.33 Aligned_cols=97 Identities=12% Similarity=-0.060 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....+|..+...|++++|...+...---.. .-..++.....+++..++|..|....+++.... |
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p---- 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELD----G---- 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C----
Confidence 34557889999999999999998886442111 124678888999999999999999999988641 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+. .+.+...+..+...++|-+|-..|.....
T Consensus 70 ------------------~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 70 ------------------QS----VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp ------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12344556777888999999999988775
No 92
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=84.15 E-value=22 Score=31.55 Aligned_cols=103 Identities=6% Similarity=-0.059 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..+|.++...|++++|...+...---. + .-...+.....++...+++..|..+.+++-...-..+..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------- 229 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA----P--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE------- 229 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC----C--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-------
Confidence 446666777777777776666532111 1 113556667777888888888888777776542111100
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.........+..++..+...++|-+|-..|......
T Consensus 230 --------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 230 --------------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp --------------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 000000123455667777788888888888887753
No 93
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=84.11 E-value=30 Score=33.04 Aligned_cols=103 Identities=13% Similarity=0.024 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhc---cCChHHHHHHHHhhCccccCCCCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD---RQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~---~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
.....+|.++...|++++|...+...---....-+.......+.....++.. .|++..|..+.+++.... |
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----~-- 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----P-- 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----T--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----c--
Confidence 3456778888888888888888776432111111111224467777888888 888888888888876431 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ...+...+..+...++|-+|...|..+...
T Consensus 447 --------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 447 --------------------RS----EQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp --------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 01 123445667777888888888888888764
No 94
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=83.86 E-value=23 Score=34.23 Aligned_cols=102 Identities=10% Similarity=-0.045 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhcc----------CChHHHHHHHHhhCcccc
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR----------QDYVRAQILSRKISPRVF 133 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~----------~D~~~a~~~~~Ki~~~~~ 133 (394)
+...+|.++...|++++|.+.+...---..........+..++....++... +++..|..+.+++-...
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 4456677777777777777766654321111111112222334444555555 77777777777765431
Q ss_pred CCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 134 DADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
| +.. ..+...+..+...++|-+|-..|......
T Consensus 459 ---p----------------------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 459 ---P----------------------RSE----QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp ---T----------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---C----------------------CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1 111 23556667778888999988888888763
No 95
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.84 E-value=15 Score=31.93 Aligned_cols=101 Identities=12% Similarity=-0.100 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
...+.....+|..+...|++++|...+...--- .. .-.+.+.....++...|++..|..+.+++-... |.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~~ 109 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI-RP-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PT 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CC-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----cc
Confidence 355777789999999999999999988764321 11 124567788899999999999999999887541 10
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
. ...+...+..+...++|-+|...|......
T Consensus 110 ----------------------~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 110 ----------------------Y----NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----------------------C----THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------c----cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 0 123445667777889999999999888863
No 96
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=83.11 E-value=13 Score=35.73 Aligned_cols=100 Identities=8% Similarity=-0.100 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
+.+..-..+|..+...|++++|.+.+....-.. + ....+...+..++..|++..|....+++-... |
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p-- 70 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK----P-- 70 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----S--
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----h--
Confidence 456777889999999999999999998765322 1 16788889999999999999999999887531 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
+. ...+...+..+...++|-+|-..|..+....
T Consensus 71 --------------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 71 --------------------DY----SKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp --------------------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred --------------------HH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 11 1335566788888999999999999888654
No 97
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=83.10 E-value=15 Score=28.70 Aligned_cols=93 Identities=11% Similarity=-0.100 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..+|..+...|++++|...+...--... .-.+.+.....++...|++..|....+|+-... |
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P-------- 82 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLD----P-------- 82 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--------
Confidence 5678889999999999998887442111 124667788889999999999999999987541 1
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+..+ .+...+..+...++|-+|-..|.....
T Consensus 83 --------------~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 83 --------------KDIA----VHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp --------------TCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 244556777788999999999988775
No 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=83.00 E-value=27 Score=31.72 Aligned_cols=97 Identities=8% Similarity=-0.105 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.+...+|.++...|++++|...+....-- .. .-...+.....++...|++..|..+.+++-... |
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~---- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----P---- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----
Confidence 456677888999999999999888764321 11 113567778888889999999999888876431 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.. ...+...+..+...++|-+|...|.....
T Consensus 283 ------------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 283 ------------------GY----IRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ------------------TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------------Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01 12345566777778888888888877664
No 99
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=82.99 E-value=28 Score=31.87 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc---cC-cHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG---AM-AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~---~m-~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
......||.+|...|++++|...+....--... .. .......+......++...+++..|..+..++-...-..
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 210 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-- 210 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS--
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc--
Confidence 445677888888888888888877764321110 00 000123344455778888888888888888876541100
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|-..|......
T Consensus 211 ----------------------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 211 ----------------------ID----PDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp ----------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------------------cC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 01 123445667788889999999999998863
No 100
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.93 E-value=31 Score=32.23 Aligned_cols=107 Identities=9% Similarity=-0.026 Sum_probs=75.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLM 85 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL 85 (394)
+....-+.|+..+|+.. .+.++...+..++.+. +...-+...++.+...||.+|...|++++|...+
T Consensus 153 ~g~~~~~~g~~~~A~~~-y~~Al~~~p~~~~~~~------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQ-YKKIVSWLEYESSFSN------------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHTCHHHHHHH-HHHHHHHTTTCCCCCS------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH-HHHHHHHhhccccCCh------------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455678889999877 6777777766553211 0011123345678889999999999999999988
Q ss_pred HHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 86 QEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 86 ~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
...-- .. + .-...+.....++...+++..|....+|+-..
T Consensus 220 ~~al~-~~---p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 220 NKALE-LD---S--NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHH-HC---T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-hC---C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 76432 11 1 12456788899999999999999999998754
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=82.91 E-value=12 Score=31.52 Aligned_cols=93 Identities=11% Similarity=-0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccC
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~ 142 (394)
.....+|..+...|++++|...+.... +. -...+.....++...||+..|..+.+++-... |
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~----- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD----K----- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----c-----
Confidence 334678999999999999999888752 11 24688889999999999999999999887541 1
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 143 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.. ...+...+..+...++|-+|-..|.....
T Consensus 69 -----------------~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 69 -----------------HL----AVAYFQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp -----------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------cc----hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11 12344556777888999999999988876
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=82.91 E-value=19 Score=29.79 Aligned_cols=102 Identities=11% Similarity=0.003 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 58 EIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 58 E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
.-+.......+|..+...|++++|...+...--- .. .-.+++.....++...++|..|.....|+-... |
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P 101 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----K 101 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----S
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----C
Confidence 3455667789999999999999999988864421 11 124577888899999999999999999997642 1
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
. ..+ .+-.++..+...++|-+|-.+|..+...
T Consensus 102 ~----------------------~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 N----------------------DYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp S----------------------CCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C----------------------CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 111 2345567778889999999999888863
No 103
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=82.43 E-value=15 Score=36.09 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc--cCc-------HHHHHHHHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFG--AMA-------KTEKIAFILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~--~m~-------~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
.+.+.....+|..+...|++.+|...+...---... ..+ ...+...++....+++..++|..|....+|+-
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777789999999999999999887753321111 111 22346888899999999999999999999987
Q ss_pred ccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 130 PRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
... | + .. +.+-..+..+...++|-+|..+|..+...
T Consensus 345 ~~~----p----------------------~--~~--~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLD----S----------------------A--NE--KGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHS----T----------------------T--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC----C----------------------c--cH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 541 1 1 11 22444557778889999999999998863
No 104
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=82.24 E-value=23 Score=30.33 Aligned_cols=98 Identities=8% Similarity=-0.062 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccC
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 142 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~ 142 (394)
.....+|.++...|++++|.+.+...--- .. .-...+.....++...+++..|..+..++.. ....+
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~----- 138 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALAS-DS-----RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYP----- 138 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CTTCT-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Cc-----CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--CccCc-----
Confidence 44566777777788888887777664321 11 1134566667777777888888877777765 11111
Q ss_pred CCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 143 KPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.. ...+...+..+...++|-+|-..|.....
T Consensus 139 -----------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 139 -----------------ER----SRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp -----------------TH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 12334455666667777777777777665
No 105
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=81.91 E-value=2.6 Score=31.86 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=33.0
Q ss_pred HhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE
Q 016147 302 SKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 337 (394)
Q Consensus 302 sk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l 337 (394)
-+-..+++++.||+.|++|+.-+...|..+...|.+
T Consensus 11 L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 11 LALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345788999999999999999999999999999977
No 106
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=81.57 E-value=3.9 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccC
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 344 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~ 344 (394)
.+|...||+.||+|...+...|.+|..+|.|...-++|
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 79999999999999999999999999999998776666
No 107
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=81.52 E-value=23 Score=29.89 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
..+...+|.++...|++++|.+.+....--. .. -.+.+...+.+++..+++..|..+.+++..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-ME-----NGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CC-----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666777777777777777666543211 10 123556666777777777777777776653
No 108
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=81.10 E-value=21 Score=29.14 Aligned_cols=125 Identities=13% Similarity=0.008 Sum_probs=81.5
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLM 85 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL 85 (394)
++..-.++|+..+|+.. .+.+... -|+. ......||.+|...|++++|...+
T Consensus 11 lG~~~~~~g~~~~A~~~-~~~al~~---~p~~------------------------~~~~~~la~~~~~~~~~~~a~~~~ 62 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRA-YKKVLKA---DPNN------------------------VETLLKLGKTYMDIGLPNDAIESL 62 (184)
T ss_dssp HHHHHHHHTCHHHHHHH-HHHHHHH---CTTC------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH-HHHHHHh---CCCC------------------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566778888888877 4444442 2221 234567788888889999988887
Q ss_pred HHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHH
Q 016147 86 QEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELK 165 (394)
Q Consensus 86 ~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k 165 (394)
......... ....+.....++...+++..|.....++.... | ...
T Consensus 63 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~----------------------~~~--- 107 (184)
T 3vtx_A 63 KKFVVLDTT------SAEAYYILGSANFMIDEKQAAIDALQRAIALN----T----------------------VYA--- 107 (184)
T ss_dssp HHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----------------------TCH---
T ss_pred HHHHhcCch------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----c----------------------cch---
Confidence 765432211 13445556777888888888888888876531 1 111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 166 RIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 166 lk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..+...+..+...++|-+|-..|..+..
T Consensus 108 -~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 108 -DAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 2244556777778888888888887775
No 109
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=80.85 E-value=7.4 Score=29.25 Aligned_cols=64 Identities=13% Similarity=-0.111 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...||.+|...|++++|.+.++..-- .... -...+.....++...|++..|....+|+-..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE-TDPD-----YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999998887432 1111 1247888899999999999999999988654
No 110
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=80.79 E-value=11 Score=26.55 Aligned_cols=65 Identities=17% Similarity=0.017 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+.....+|..+...|++++|.+.+...---.. .-...+.....++...+++..|..+..++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 356677899999999999999998876432111 11456778899999999999999999988754
No 111
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.49 E-value=33 Score=30.97 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=100.3
Q ss_pred HHHHhh-hchhHHHHHHHHHHHHHhccCCCChHHHHHHHH-Hhhhhc-CCcchHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 016147 7 LFIIRS-VYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIK-TLNSVS-AGKIYVEIERARLIKKLAKIKEEQGLIAEAAD 83 (394)
Q Consensus 7 ~~l~k~-r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~-~L~~vt-~gki~~E~era~l~~~La~i~e~~gd~~eAa~ 83 (394)
.|+..+ -++..+|+...-+-+.-|.. ..+.+.-+.... ++.--. -|. ....+..-..++.+|...|++++|..
T Consensus 23 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~g~~~~A~~~~~~al~~~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 23 KLFSGSDSYKFEEAADLCVQAATIYRL-RKELNLAGDSFLKAADYQKKAGN---EDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHHHHHHH-TTCTHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcCCCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 444433 33688888776555544432 223232233332 222100 111 12346777899999999999999998
Q ss_pred HHHHhhhhhccc-CcHHHHHHHHHHHHHHHhcc-CChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccch
Q 016147 84 LMQEVAVETFGA-MAKTEKIAFILEQVRLCLDR-QDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSL 161 (394)
Q Consensus 84 iL~~i~vEt~~~-m~~~eK~e~~Leq~rL~L~~-~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (394)
.+...- +.+.. -+...-...+.....++... +++..|..+.+++-...-..+ .
T Consensus 99 ~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~------------------------~ 153 (292)
T 1qqe_A 99 SLENAI-QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ------------------------S 153 (292)
T ss_dssp HHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT------------------------C
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC------------------------C
Confidence 776532 22222 23334466788889999996 999999999999876532111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 162 LELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 162 ~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
...-...+.-.+..+...++|-+|..+|..+....
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11223445666788888999999999999998743
No 112
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.62 E-value=31 Score=30.14 Aligned_cols=121 Identities=10% Similarity=-0.065 Sum_probs=72.2
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhccCCC-----------------ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTAMVQQAMQYIDQTP-----------------DLDTRIELIKTLNSVSAGKIYVEIERARLIKKL 68 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~-----------------d~~~k~~~i~~L~~vt~gki~~E~era~l~~~L 68 (394)
+....-+.|+..+|+.. .+.+...-+..| +.+.-+...+.+....|+.- ........+
T Consensus 21 ~a~~~~~~g~~~~A~~~-~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l 95 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEY-FKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----RVPQAEYER 95 (261)
T ss_dssp HHHHHHHTTCHHHHHHH-HHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----THHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH-HHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc----hhHHHHHHH
Confidence 34445567888888877 344444333321 12222333333333333322 123556788
Q ss_pred HHHHHH--------hcCHHHHHHHHHHhhhhhcccCcHHH-----------HHHHHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 69 AKIKEE--------QGLIAEAADLMQEVAVETFGAMAKTE-----------KIAFILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 69 a~i~e~--------~gd~~eAa~iL~~i~vEt~~~m~~~e-----------K~e~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
|..+.. .|++++|...+..+--...++-.... ..+..+...+++...|+|..|....+++-
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999 99999999999886532222211111 11112677899999999999999999987
Q ss_pred cc
Q 016147 130 PR 131 (394)
Q Consensus 130 ~~ 131 (394)
..
T Consensus 176 ~~ 177 (261)
T 3qky_A 176 DA 177 (261)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 113
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=79.60 E-value=13 Score=28.74 Aligned_cols=52 Identities=6% Similarity=-0.061 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 295 EHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 295 EHNI~visk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
-+-+..++ +. ++..+||..+|+|+.-+.+++..|...|-|.-. ..|+...++
T Consensus 11 ~~IL~~i~--~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~k 62 (95)
T 1r7j_A 11 QAILEACK--SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKK 62 (95)
T ss_dssp HHHHHHHT--TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHH
T ss_pred HHHHHHHH--cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChh
Confidence 33344444 34 999999999999999999999999999988665 345444333
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=79.48 E-value=19 Score=30.14 Aligned_cols=114 Identities=6% Similarity=-0.073 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.+...+|.+|...|++++|.+.+...--- .. .-...+.....++...+++..|....+++-...-.....
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 107 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINR-DK-----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--- 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE---
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHH---
Confidence 457788999999999999999988764321 11 124677888999999999999999999987542110000
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.+...+ ....+. . ...+...+..+...++|-+|-..|......
T Consensus 108 -----~~~~~~--~~~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 108 -----DYKILG--LQFKLF--A--CEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp -----ECGGGT--BCCEEE--H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----HHHHhc--cccCcc--c--hHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 000000 000011 1 233445567778889999999999988864
No 115
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.37 E-value=2.8 Score=32.42 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=34.0
Q ss_pred HhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 302 SKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 302 sk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
-+-..+++++.||+.||+|+.-+...|..+...|.|.-
T Consensus 11 L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 11 LALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34568899999999999999999999999999997753
No 116
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.31 E-value=12 Score=28.50 Aligned_cols=66 Identities=8% Similarity=-0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.....+|.++...|++++|.+.+..+--..... ....+.++....++...||+..|..+.+++-..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456789999999999999999988754221111 123567788899999999999999999998764
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.30 E-value=32 Score=34.34 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....||..+...|++++|.+.++..--- .+ .-.+.+.....++...+++..|..+.+++-... |
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---- 88 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA----P---- 88 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C----
Confidence 345677888888888888888877764311 11 124567777888888888888888888876531 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+. ...+...+..+...++|-+|-..|......
T Consensus 89 ------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 89 ------------------EH----PGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp ------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 122445556677788888888888877753
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=79.13 E-value=18 Score=27.03 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcc-cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~-~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+...+|.++...|++++|...+...---... .-........+.....++...+++..|..+..++-..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45578899999999999999988875422111 2233444778889999999999999999999988753
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=79.06 E-value=16 Score=34.22 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
.|..++..+|..+-..|++++|.+++..+... + ..++ ...-...+++..++|..|..+..++....
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~----p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVA--G----SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--T----CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C----CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-------
Confidence 46778889999999999999999999876531 1 1333 44455569999999999999987554210
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccC
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 196 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~ 196 (394)
+..+....+-..+..+...++|-+|-.+|..+...+
T Consensus 166 ---------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 166 ---------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred ---------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 111222223444677888999999999999998644
No 120
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.93 E-value=11 Score=28.80 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 59 IERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 59 ~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
-........||.+|...|++++|.+.+...--- .. .. .+.+.....++...|++..|..+..++-..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FP---NH--QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT---TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC---Cc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677889999999999999999998875321 11 11 567778899999999999999999998754
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=78.26 E-value=73 Score=33.65 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=87.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 016147 5 LLLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADL 84 (394)
Q Consensus 5 ~~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~i 84 (394)
.|+.+-.+.|+..+|+.. .+++...- |+. +.....||.+|...|++++|...
T Consensus 14 nLG~~~~~~G~~~eAi~~-~~kAl~l~---P~~------------------------~~a~~nLg~~l~~~g~~~eA~~~ 65 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRL-YRKALEVF---PEF------------------------AAAHSNLASVLQQQGKLQEALMH 65 (723)
T ss_dssp HHHHHHHHTTCHHHHHHH-HHHHHHHC---SCC------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHhC---CCC------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 356777889999999877 45555432 221 23456789999999999999988
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHH
Q 016147 85 MQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLEL 164 (394)
Q Consensus 85 L~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (394)
++..- +- .+ .-.+.+.....++...+++..|....+|+-.. +| +..+
T Consensus 66 ~~~Al-~l----~P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P----------------------~~~~- 112 (723)
T 4gyw_A 66 YKEAI-RI----SP-TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NP----------------------AFAD- 112 (723)
T ss_dssp HHHHH-HH----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT----------------------TCHH-
T ss_pred HHHHH-Hh----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC----------------------CCHH-
Confidence 77532 11 11 12456777888999999999999999988653 11 1112
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 165 KRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 165 klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
-+...+..+...++|-+|-.+|.....
T Consensus 113 ---a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 113 ---AHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244556777788999999999998886
No 122
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=78.22 E-value=54 Score=32.15 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCc
Q 016147 60 ERARLIKKLAKIKEEQGLI-AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPS 138 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~-~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~ 138 (394)
..+.+...+|..+...|++ ++|.+.+...--... .-.+.+.....++...+|+..|..+..++-...
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 167 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------ 167 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------
Confidence 3577888999999999999 999998887432111 124678888999999999999999999987531
Q ss_pred cccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhcc
Q 016147 139 KEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN---------NDYLEICRCYKAIYEI 195 (394)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~---------~~flea~k~y~ei~~t 195 (394)
++ -..+...+..+... ++|-+|-..|......
T Consensus 168 --------------------p~-----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 168 --------------------KN-----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp --------------------CC-----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CC-----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 11 13455566777777 9999999999998863
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=77.56 E-value=7.9 Score=28.24 Aligned_cols=64 Identities=13% Similarity=-0.078 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhcc-CChHHHHHHHHhhCcc
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR-QDYVRAQILSRKISPR 131 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~-~D~~~a~~~~~Ki~~~ 131 (394)
....+|.++...|++++|...+...--- . +.....+.+.....++... +++..|..+.+++...
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINV-I---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-S---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-C---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 4568999999999999999988874321 1 1112356788889999999 9999999999998764
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=77.51 E-value=12 Score=27.88 Aligned_cols=64 Identities=13% Similarity=-0.145 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|.++...|++++|.+.+...---... -...+....+++...+++..|..+..++...
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 445678999999999999999988875422111 1457788899999999999999999988754
No 125
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=77.43 E-value=5.5 Score=30.19 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccC
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 344 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~ 344 (394)
++|...||+.||+|...+.+.|.+|..+|.|.-.-.+|
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999986543444
No 126
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=76.87 E-value=6.4 Score=34.32 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCC
Q 016147 68 LAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEG 147 (394)
Q Consensus 68 La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~ 147 (394)
++......|++++|...+..+--. ...++....+.+....+++...+++..|..+..++-... |
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~---------- 74 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----P---------- 74 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C----------
T ss_pred eeeccCccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----C----------
Confidence 344555678999999988875432 234566788999999999999999999999999987541 1
Q ss_pred CcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 148 DNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 148 ~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|-.+|..+...
T Consensus 75 ------------~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 75 ------------DM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp ------------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------Cc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 11 123556677888899999999999998873
No 127
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=76.30 E-value=13 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
+.....+|..+...|++++|.+.+...---... -...+.....+++..|+|..|.....++-..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455678999999999999999988764321111 1466788899999999999999999998754
No 128
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=76.20 E-value=37 Score=29.26 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
+..-..+|.++...|++++|.+.+....--.. ...+.+.....++...||+..|..+.+++-..
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 44557889999999999999988876442111 12357788888999999999999999888764
No 129
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.05 E-value=32 Score=28.41 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=10.6
Q ss_pred HHHHHhhhchhHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTA 22 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~ 22 (394)
+....-+.|+..+|+..
T Consensus 14 ~~~~~~~~~~~~~A~~~ 30 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATAS 30 (225)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444567777777765
No 130
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=75.89 E-value=63 Score=31.70 Aligned_cols=100 Identities=12% Similarity=-0.036 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..|+.+|...|++++|.+.+....- .... -...+...+.++...|++..|..+.+++....-..+.
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 510 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYA-LFQY-----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS-------- 510 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc--------
Confidence 4455666666666666665555431 1100 1234556666666777777777766666432110000
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
..+.....+..++..+...++|-+|-..|..+..
T Consensus 511 ---------------~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 511 ---------------NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp ---------------CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0011123355556666667777777777776664
No 131
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=74.97 E-value=22 Score=31.55 Aligned_cols=94 Identities=11% Similarity=-0.128 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
..+|..+...|++++|...+....-... .-.+.+.....++...+++..|..+..++.... |
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~-------- 86 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLD----P-------- 86 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----c--------
Confidence 5788899999999999999987643221 134567778899999999999999999987541 1
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. ...+...+..+...++|-+|-..|..+...
T Consensus 87 --------------~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 87 --------------KD----IAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp --------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 123455677788899999999999988864
No 132
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=74.91 E-value=15 Score=27.71 Aligned_cols=64 Identities=11% Similarity=-0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...||.++...|++++|.+.+...-- ... .-.+.+.....++...|++..|.....++-..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALD-FDP-----TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-HCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999998887432 111 11456778899999999999999999988653
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=74.82 E-value=16 Score=26.85 Aligned_cols=63 Identities=16% Similarity=-0.006 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.....+|.++...|++++|...+....-- .. .-...+.....++...+++..|..+.+++-..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34578899999999999999988875421 11 11356778889999999999999999988653
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.79 E-value=17 Score=28.10 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
...+...+|..+...|++++|...+...--- ... -.+.+.....++...+++..|..+..++...
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGG-----DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Ccc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5677789999999999999999988764321 111 1567788899999999999999999988754
No 135
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=74.04 E-value=22 Score=35.84 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcH--HHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAK--TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~--~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
...+.-+...|++++|..++....--.-..+.+ -.-+..+-..+.+|...|+|..|..+..|+-......-
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l------- 385 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY------- 385 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc-------
Confidence 344555778999999998876644322223333 34667777789999999999999999999865322111
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
++...+.-.. +.-.+..|.+.++|-+|-..|.....
T Consensus 386 --------------G~~Hp~~a~~-l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 386 --------------HHNNAQLGMA-VMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp --------------CTTCHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123444333 44445666778999999988876664
No 136
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=73.84 E-value=42 Score=28.80 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
....+|..+...|++++|...+..+--....+ ....+.++.....+...+||..|....+++-..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45678889999999999999999865321111 123457777889999999999999999998754
No 137
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=73.55 E-value=27 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
..++...||+.+|+|..-+-..+..|...|-|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3589999999999999999999999999999977655
No 138
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.48 E-value=57 Score=30.09 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCC
Q 016147 67 KLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKE 146 (394)
Q Consensus 67 ~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~ 146 (394)
.+|..+...|++++|...+..+--. .+.. ...+.....+++..+++..|..+..++... +|.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~-------- 65 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ----EPDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPL-------- 65 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH----CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--------
Confidence 3677788888888888877664321 1111 245566677788888888888887776542 110
Q ss_pred CCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 147 GDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
. ...+...+..+...++|-+|-..|.....
T Consensus 66 --------------~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 66 --------------L----AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp --------------C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------c----hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 12345556667777888888888877765
No 139
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=72.82 E-value=15 Score=29.42 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=37.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
..+|...||+.+|+|..-+=..+..|+..|-|.-.-|..++-
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r 81 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERK 81 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCce
Confidence 679999999999999999999999999999998877666543
No 140
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=72.11 E-value=12 Score=26.87 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=31.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
..+|...||+.||+|...+.+.+..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999754
No 141
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=71.89 E-value=61 Score=29.74 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....||.++...|++++|...+...--- ............+....++++..||+..|..+..++....-..+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----- 208 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----- 208 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-----
Confidence 445567888899999999998888764321 11222222456677788999999999999999888764321100
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.....-.......+.++...+++-+|-..+.....
T Consensus 209 ------------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 209 ------------------YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ------------------cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 00111111122344557778888888888887765
No 142
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.87 E-value=23 Score=27.71 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=36.5
Q ss_pred CcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 306 SRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 306 ~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
..+++..||+.+ |++..-+-..|.+|...|-|....|..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 578999999999 99999999999999999999877765443
No 143
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.57 E-value=36 Score=27.02 Aligned_cols=49 Identities=8% Similarity=-0.005 Sum_probs=40.2
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc---CCCEEEEe
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR---PQGIVCFQ 351 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq---~~giV~F~ 351 (394)
.....+|...||+.+|+|..-+-..+.+|+..|-|.-.-|. ....+...
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT 99 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEEC
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEEC
Confidence 35678999999999999999999999999999999876654 44445544
No 144
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=70.42 E-value=39 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=32.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
+|...||+.+|+|..-+-+.|..|...|-+.-.-+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 99999999999999999999999999999865433
No 145
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=70.13 E-value=34 Score=27.04 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=45.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE---EEEecCCChHHHHHHHHHHHH
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI---VCFQVAKDSNDILNSWAMNLE 368 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi---V~F~~~k~~~~~L~~W~~~I~ 368 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-..|..++- |.... ...+.+..+...+.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~--~G~~~~~~~~~~~~ 110 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT--GGAAICEQCHQLVG 110 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECH--HHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEECh--hHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999998777655543 43332 22344555544443
No 146
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=69.94 E-value=50 Score=27.97 Aligned_cols=95 Identities=11% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHH----------------HHHHHhccCChHHHHHHHHhh
Q 016147 65 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILE----------------QVRLCLDRQDYVRAQILSRKI 128 (394)
Q Consensus 65 ~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Le----------------q~rL~L~~~D~~~a~~~~~Ki 128 (394)
....|..+...|++++|...+...--- ++ .-.+.+.. ...++...|++..|....+++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-----NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456777888999999999988764321 11 11223333 789999999999999999998
Q ss_pred CccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 129 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
-... | +.. ..+...+..+...++|-+|-.+|..+...
T Consensus 81 l~~~----p----------------------~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 81 LQKA----P----------------------NNV----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHC----T----------------------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHC----C----------------------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7541 1 111 23455677788899999999999999874
No 147
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=69.84 E-value=49 Score=32.47 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhh---hhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVA---VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~---vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..++....||..|...|+|++|....+..- ...+|.-. -.-...+.....++...|++..|..+..|+-..
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 468888999999999999999998877532 22334322 345677888999999999999999999998764
No 148
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=69.56 E-value=64 Score=29.03 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.....+|..+...|++++|...++..--...+ -.+.++...++++..|++..|....+++...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 44578999999999999999998875432211 2467788899999999999999999988643
No 149
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=69.30 E-value=36 Score=27.07 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=39.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccC---CCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP---QGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~---~giV~F~ 351 (394)
...++...||+.+|+|..-+-..+.+|+..|-|.-.-|.. ...+...
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT 97 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT 97 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEEC
Confidence 7889999999999999999999999999999997766543 3344443
No 150
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=69.08 E-value=33 Score=32.67 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHh---hhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEV---AVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i---~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
++.+-..||.++...|++++|.+.++.- .-+..+.-....-+..+-....++...|++..|..+..|+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3556678999999999999999888642 111222111222344566778899999999999999998864
No 151
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=69.03 E-value=32 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=36.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
..+|...||+.+|++..-+-..+.+|+..|-+.-.-|..++
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 47999999999999999999999999999999877665544
No 152
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=68.92 E-value=16 Score=34.23 Aligned_cols=105 Identities=10% Similarity=-0.130 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hhhhcc----cC------cHHHHHHHHHHHHHHHhccCChHHHHHHHHhh
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEV-AVETFG----AM------AKTEKIAFILEQVRLCLDRQDYVRAQILSRKI 128 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i-~vEt~~----~m------~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki 128 (394)
+.+.....+|..+...|++.+|...+... ...... .. ....+...++....+++..++|..|..+.+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667788999999999999999987762 221110 00 01112347888899999999999999999998
Q ss_pred CccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 129 SPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
-... |. .. +.+...+..+...++|-+|-..|..+..
T Consensus 257 l~~~----p~------------------------~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 257 LTEE----EK------------------------NP--KALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHC----TT------------------------CH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHhC----CC------------------------CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7531 11 11 2344556777888999999999988875
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=68.68 E-value=90 Score=30.41 Aligned_cols=106 Identities=10% Similarity=-0.062 Sum_probs=74.9
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQ 86 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~ 86 (394)
....-++|+..+|+.. .+.+....+..++..... ..-....++.+...+|..|...|++++|...+.
T Consensus 275 G~~~~~~g~~~~A~~~-y~~Al~~~p~~~~~~~~~------------~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 275 GTVYFKGGKYMQAVIQ-YGKIVSWLEMEYGLSEKE------------SKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHHTTCCSCCHHH------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHH-HHHHHHHhcccccCChHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4445568888999887 677777776655321000 001234557788899999999999999999877
Q ss_pred HhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 87 EVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 87 ~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..-- . -+. -...+....+.++..++|..|....+|+...
T Consensus 342 ~al~-~---~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 342 KALG-L---DSA--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHH-H---STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHh-c---CCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6431 1 111 2456788899999999999999999998754
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=68.65 E-value=85 Score=30.10 Aligned_cols=108 Identities=12% Similarity=-0.044 Sum_probs=79.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 51 SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 51 t~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
.++...+-...+.....++.++...|++++|...+....-- ++. .+.+.....++...+++..|..+..++..
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPT--PNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 34433333445667788999999999999999998875421 222 57788899999999999999999998865
Q ss_pred cccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 131 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
.. | +.. ..+...+..+...++|-+|-..|..+...
T Consensus 305 ~~----~----------------------~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 305 LN----P----------------------EYP----PTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HC----T----------------------TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC----C----------------------CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 32 1 111 23556677888899999999999988863
No 155
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=68.60 E-value=41 Score=33.84 Aligned_cols=111 Identities=7% Similarity=-0.016 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHh---hhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCC
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEV---AVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD 136 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i---~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~ 136 (394)
..+.....||.+|...|+|++|....+.. ....+|.-. -.-...+...+.+|...|+|..|..+..|+-......-
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN-AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 46888899999999999999999877653 222333322 34566788889999999999999999999876432211
Q ss_pred CccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 016147 137 PSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIY 193 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~ 193 (394)
+. ..+.+.++. ......+...+.|.+|=..|+..-
T Consensus 428 G~------------------~Hp~~~~~~----~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 428 GP------------------SHPITKDLE----AMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp CT------------------TSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------------------CChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 012233332 444455566667777666666554
No 156
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.23 E-value=28 Score=29.64 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=35.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
-.++|...||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 4689999999999999999999999999999873 667765
No 157
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=67.96 E-value=30 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=38.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
...++...||+.+|+|..-+-..+.+|+..|-+.-.-|..++-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 4679999999999999999999999999999998877665554
No 158
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.75 E-value=35 Score=27.54 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=36.1
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
...+|...||+.+|+|..-+-..+.+|+..|-|.-.-|..+
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d 89 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKD 89 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCC
Confidence 46799999999999999999999999999999977665433
No 159
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=67.72 E-value=45 Score=26.56 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=39.2
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEe---ccCCCEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQV 352 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akI---Dq~~giV~F~~ 352 (394)
..+|...||+.+|+++.-+-..+.+|+..|-|.-.- |+....|....
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 789999999999999999999999999999997766 44445565553
No 160
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.72 E-value=46 Score=33.20 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....||.+|...|++++|.+.++..---.. .-.+.+.....++...+++..|..+.+++-... |
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---- 122 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----P---- 122 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----
Confidence 45668899999999999999998886432111 115677888999999999999999999987541 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN---NDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~---~~flea~k~y~ei~~t 195 (394)
+..+ .+...+..+... +++-+|...|.+....
T Consensus 123 ------------------~~~~----~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 123 ------------------EEPY----ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp ------------------TCHH----HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ------------------CCHH----HHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 1111 233455666667 8999999999888753
No 161
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.66 E-value=43 Score=26.38 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=37.3
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
...+|...||+.+|+|..-+-..+.+|+..|-|.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 3569999999999999999999999999999998776655543
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=67.65 E-value=20 Score=26.88 Aligned_cols=64 Identities=16% Similarity=-0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|.++...|++++|.+.+...--- .. .-...+.....++...+++..|..+..++...
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQL-EP-----TFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-----CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456678999999999999999988774421 11 12457788889999999999999999988653
No 163
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.65 E-value=37 Score=25.55 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=50.7
Q ss_pred cCcccHHHH----HHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHHHHH
Q 016147 305 YSRITLKRL----AELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVE 375 (394)
Q Consensus 305 Y~~Isl~rL----a~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V~ 375 (394)
...++...| |+.++++..-+=..+.+|...|-+.-.-|.....+.... ...+.+..|...+......+.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~--~G~~~~~~~~~~~~~~~~~~~ 92 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTE--KGKLFAISLKTAIETYKQIKK 92 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECH--HHHHHHHHHHHHHHHHHHHHh
Confidence 457899999 899999999999999999999999888887444454443 234566666665555555443
No 164
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=67.45 E-value=96 Score=30.28 Aligned_cols=96 Identities=6% Similarity=-0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhcc---------CChHHHHHHHHhhCccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDR---------QDYVRAQILSRKISPRV 132 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~---------~D~~~a~~~~~Ki~~~~ 132 (394)
+.....||.+|...|++++|...+...-- +++. ...+.....++... +++..|..+.+++-...
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALT-----HCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 45678899999999999999998876431 2233 37888889999999 99999999999987642
Q ss_pred cCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHhc
Q 016147 133 FDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN--------NDYLEICRCYKAIYE 194 (394)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~--------~~flea~k~y~ei~~ 194 (394)
| +..+ .+...+..+... ++|-+|-..|.....
T Consensus 210 ----p----------------------~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 210 ----V----------------------LDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp ----T----------------------TCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ----C----------------------CCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 1 1111 233444555555 889999999988886
No 165
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=67.08 E-value=23 Score=25.60 Aligned_cols=60 Identities=15% Similarity=-0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHH-HHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIA-FILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e-~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+|..+...|++++|...+....-. .. -+ .. .+.....++...+++..|.....++-..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-~p-~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-EP-VG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CS-ST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CC-Cc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46788899999999999998875321 11 11 23 6777888999999999999999998754
No 166
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=66.94 E-value=41 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=35.1
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
..+|.+.||+.+|+++.-+-..+.+|+..|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999776654443
No 167
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.86 E-value=95 Score=30.34 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcH---------------------HHHHHH--------------H--
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAK---------------------TEKIAF--------------I-- 105 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~---------------------~eK~e~--------------~-- 105 (394)
.....|+++|.+.|+.++.++++..+.. -++.+++ ...+++ +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-FLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-GGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999987777765431 1122211 111222 2
Q ss_pred --H--HHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhh
Q 016147 106 --L--EQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNND 181 (394)
Q Consensus 106 --L--eq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~ 181 (394)
| +.+.++++.|||.+|...++++....-.. ++..+.+..|.+.+++|...+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~------------------------dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKL------------------------DDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS------------------------SCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc------------------------ccchhHHHHHHHHHHHHHHhcc
Confidence 2 44778999999999999988887643211 1235668889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 016147 182 YLEICRCYKAIYE 194 (394)
Q Consensus 182 flea~k~y~ei~~ 194 (394)
+-.+-..|.....
T Consensus 155 ~~k~k~~l~~a~~ 167 (394)
T 3txn_A 155 LPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9887766665544
No 168
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=66.73 E-value=41 Score=26.95 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=35.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 357999999999999999999999999999999776654443
No 169
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=66.48 E-value=54 Score=27.77 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
...+...||.+|...|++++|...+...---. + .-.+.++....++...|++..|....+|+-..
T Consensus 53 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKA----P--NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34556679999999999999999887643211 1 12467888899999999999999999998754
No 170
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.41 E-value=30 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=37.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
...++...||+.+|++..-+=..+.+|...|-|.-.-| +..-.|...
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 97 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLS 97 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEEC
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEEC
Confidence 56899999999999999999999999999999977654 444445544
No 171
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=66.25 E-value=23 Score=28.45 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHhhc--CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEE
Q 016147 296 HNILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348 (394)
Q Consensus 296 HNI~visk~Y--~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV 348 (394)
|-+..+++.+ ..+|.+.||+.+|+|+..+.+.+..|...|-+...=.+..|+.
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 3444455544 5699999999999999999999999999998865433334443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=65.54 E-value=46 Score=25.88 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=66.3
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 016147 6 LLFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLM 85 (394)
Q Consensus 6 ~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL 85 (394)
++...-+.|+..+|+.. -+.++..- | .. +.+-..+|.+|...|++++|.+.+
T Consensus 14 lG~~~~~~~~~~~A~~~-y~~Al~~~---p-----------------~~-------~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVH-YDKAIELD---P-----------------SN-------ITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHTTCHHHHHHH-HHHHHHHC---T-----------------TC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH-HHHHHHhC---C-----------------CC-------HHHHHhHHHHHHHhhhHHHHHHHH
Confidence 34555667778888776 34444421 2 11 334568899999999999999877
Q ss_pred HHh-hhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 86 QEV-AVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 86 ~~i-~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
... .+......+.......+......+...+|+..|..+.+|+-.
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 642 222212233445567788889999999999999999998754
No 173
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=65.42 E-value=40 Score=27.08 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=39.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-.-| +....|...
T Consensus 52 ~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT 101 (152)
T 3bj6_A 52 TPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLT 101 (152)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEC
Confidence 46799999999999999999999999999999977665 444455554
No 174
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=65.19 E-value=46 Score=26.44 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=35.9
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
...+|.+.||+.+|+|..-+-..+.+|+..|-|.-.-|..+
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d 81 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCC
Confidence 35799999999999999999999999999999987765433
No 175
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.18 E-value=23 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=31.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
..+|...||+.+|+|..-+-..+..|...|.|..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999999999999999864
No 176
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=65.13 E-value=41 Score=25.18 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=34.8
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
-..+|...||+.+|+|..-+-..+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 56799999999999999999999999999999976655433
No 177
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=65.11 E-value=15 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=30.5
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
.+|...||+.||+|+.-+...|..|...|.|.-
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 499999999999999999999999999998853
No 178
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=64.88 E-value=17 Score=37.31 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHH
Q 016147 166 RIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWY 215 (394)
Q Consensus 166 lk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~ 215 (394)
+++.++.-+||...++|++||+-...+-.+ ...-+-.++++.|+.|+-+
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~~i~L~~RIeyLsrA~~~ 265 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATS-NFDITLFERIEFLSRANGF 265 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHH
Confidence 446788889999999999999999999876 2222336789999999854
No 179
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=64.87 E-value=40 Score=25.03 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 344 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~ 344 (394)
..+|...||+.+|+|..-+-..+..|...|-+...-|..
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 469999999999999999999999999999997665543
No 180
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=64.04 E-value=19 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
-..++|...||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 34789999999999999999999999999999884 557765
No 181
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.76 E-value=38 Score=27.69 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=38.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC---EEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g---iV~F~ 351 (394)
...++...||+.+|+++.-+=..+.+|+..|-|.-.-|..++ .|...
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 111 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLT 111 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEEC
Confidence 467999999999999999999999999999999877754443 45544
No 182
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=63.29 E-value=28 Score=27.68 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=47.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc---CCCEEEEecCCChHHHHHHHHHHHHHHHHHH
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR---PQGIVCFQVAKDSNDILNSWAMNLEKLLDLV 374 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq---~~giV~F~~~k~~~~~L~~W~~~I~~l~~~V 374 (394)
..+|...||+.++++..-+=..+.+|+..|-|.-.-|. -...|.... ...+.+......+...+...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~--~G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA--QQRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH--HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999988765544 444454432 23345555555555554443
No 183
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=62.82 E-value=54 Score=32.32 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=66.4
Q ss_pred HHhcCHHHHHHHHHHhhhhhcccCcH--HHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcc
Q 016147 73 EEQGLIAEAADLMQEVAVETFGAMAK--TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNV 150 (394)
Q Consensus 73 e~~gd~~eAa~iL~~i~vEt~~~m~~--~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~ 150 (394)
...|++++|..+++...--.-..+.+ -.-+..+-..+.+|...|+|.+|..+..|+-......-
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-------------- 374 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-------------- 374 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------------
Confidence 34689999998887643222122322 24566677789999999999999999999876432111
Q ss_pred cccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 151 VEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 151 ~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
++...+.-.. +.-++..|.+.++|-+|-..|..++.
T Consensus 375 -------G~~Hp~~a~~-l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 375 -------PVYSLNVASM-WLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -------CSSCHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------CCCChHHHHH-HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1123444333 44456677788999999998876664
No 184
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.74 E-value=56 Score=25.88 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=37.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
...++...||+.+|+|..-+-..+.+|+..|-|.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999998876655543
No 185
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=62.46 E-value=73 Score=27.16 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
+.....+|.+|...|++.+|...++.+-- .+..- ..--+.+......+...|++..|....+++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~~--~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLR-DYPDT--QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HCcCC--CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 34456789999999999999999988643 22211 12336778889999999999999999988764
No 186
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=62.32 E-value=30 Score=27.68 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=38.9
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc---CCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR---PQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq---~~giV~F~~ 352 (394)
...+|.+.||+.+|++..-+=..+.+|+..|-|.-.-|. ....|....
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 346999999999999999999999999999999765544 444555553
No 187
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.94 E-value=37 Score=25.71 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhc--ccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETF--GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~--~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.-...||..+...|++..|..-++..- +.. .......+.+++......+...||+..|..+.+++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al-~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHH-HhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445789999999999999999887632 222 11112346677788889999999999999999998753
No 188
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=61.89 E-value=55 Score=26.48 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=37.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc---CCCEEEEe
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR---PQGIVCFQ 351 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq---~~giV~F~ 351 (394)
..++...||+.+|++..-+-..+.+|+..|-|.-.-|. ....+...
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 105 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT 105 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEEC
Confidence 47999999999999999999999999999999776644 44444443
No 189
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=61.53 E-value=56 Score=27.03 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=36.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+|.+.||+.+|++..-+=..+.+|+..|-|.-..|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 357999999999999999999999999999999877665443
No 190
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=61.33 E-value=57 Score=25.57 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=48.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHH-HHHHHHhhhhH
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLD-LVEKSCHQIHK 383 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~-~V~k~~~lI~k 383 (394)
...+...||+.+|+|..-+=..+..|...|-+...-+. +-+.+.-....-..+..|-.....+.. .++....++..
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g--r~~~y~l~~~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~ 106 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG--RVRTCAIEKEPFTAVEAWLAEQQELWESRTDRLEQFVTE 106 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECSHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC--CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999887663 334444333344556666666654442 23344444443
No 191
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=61.28 E-value=21 Score=29.48 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=35.9
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
-.++|+..||+.+|+|+.-+-..+.+|...|.|. +.+|+.
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 4789999999999999999999999999999874 567865
No 192
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=60.94 E-value=70 Score=26.46 Aligned_cols=107 Identities=10% Similarity=-0.061 Sum_probs=69.9
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhccCCCChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQ 86 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~~~~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~ 86 (394)
....-+.|+..+|+.. .+.+....+..|+.... .+..- ...-...+...+|..+...|++++|...+.
T Consensus 45 g~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 45 GNEFFKKNEINEAIVK-YKEALDFFIHTEEWDDQ--ILLDK---------KKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHTTTTCTTCCCH--HHHHH---------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH-HHHHHHHHhcccccchh--hHHHH---------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3444566777777765 56666665554432100 00000 011135677889999999999999998887
Q ss_pred HhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 87 EVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 87 ~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..--- . + .-...++....++...+++..|..+.+++-..
T Consensus 113 ~al~~-~---p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 113 KVLKI-D---K--NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHH-S---T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHh-C---c--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 64321 1 1 12457788899999999999999999998654
No 193
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=60.72 E-value=83 Score=27.23 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
+.....+|..+...|++++|...+..+--...+ .....+.++....++...|||..|....+++-...-. +
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-~----- 85 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-D----- 85 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-C-----
Confidence 556688999999999999999999986532211 1234678888999999999999999999998765311 1
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH--------NNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~--------~~~flea~k~y~ei~~t 195 (394)
+...+ . +-..+..+.. .++|-+|-..|..+...
T Consensus 86 -----------------~~~~~--a--~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 86 -----------------PRVPQ--A--EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp -----------------TTHHH--H--HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred -----------------chhHH--H--HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 01111 1 2233445555 88999999999988864
No 194
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=60.54 E-value=32 Score=27.13 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=36.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+|...||+.+|+|..-+-..+.+|+..|-|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 467999999999999999999999999999999766554433
No 195
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=60.18 E-value=64 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHH
Q 016147 97 AKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYY 176 (394)
Q Consensus 97 ~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~ 176 (394)
+.....+.+......++..+||..|..+.+++-... | .. ..++...+..+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p----------------------~~----~~~~~~l~~~~ 55 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----P----------------------AN----PIYLSNRAAAY 55 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----T----------------------TC----HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----------------------cC----HHHHHHHHHHH
Confidence 345678889999999999999999999999987542 1 11 23455666778
Q ss_pred HhhhhHHHHHHHHHHHhcc
Q 016147 177 SHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 177 ~~~~~flea~k~y~ei~~t 195 (394)
...++|-+|-..|......
T Consensus 56 ~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 56 SASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8899999999999998864
No 196
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=60.17 E-value=23 Score=29.67 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=35.3
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
..++|...||+.+|+|+.-+-+.+.+|...|-|. +.+|+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 4679999999999999999999999999999774 567754
No 197
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=59.87 E-value=24 Score=29.22 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEE
Q 016147 294 IEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348 (394)
Q Consensus 294 iEHNI~visk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV 348 (394)
.-|-+..+++.+.. |.+.||+.+++|+..+++++..|...|-|...=. ..|+.
T Consensus 11 Al~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~ 63 (145)
T 1xd7_A 11 AIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGAS 63 (145)
T ss_dssp HHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCE
T ss_pred HHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCce
Confidence 34555566666667 9999999999999999999999999999876655 44543
No 198
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.66 E-value=56 Score=27.11 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=38.1
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEe---ccCCCEEEEec
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQV 352 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akI---Dq~~giV~F~~ 352 (394)
.....+|...||+.++++..-+=..+.+|+..|-|.-.- |+....|....
T Consensus 64 ~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 64 QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 334569999999999999999999999999999997666 55555566554
No 199
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=59.11 E-value=83 Score=26.72 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCC
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKK 143 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~ 143 (394)
....+|..+...|++++|...+...--- ++ .-.+.+.....++...|++..|....+|+-... |
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P------ 70 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE-----NP-QDPEALYWLARTQLKLGLVNPALENGKTLVART----P------ 70 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C------
Confidence 4567899999999999999988864311 11 124567788889999999999999999987541 1
Q ss_pred CCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHhcc
Q 016147 144 PKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN-----------NDYLEICRCYKAIYEI 195 (394)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~-----------~~flea~k~y~ei~~t 195 (394)
+..+. +...+..+... ++|-+|-..|......
T Consensus 71 ----------------~~~~a----~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 71 ----------------RYLGG----YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp ----------------TCHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcHHH----HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 11111 23344555556 8999999999888863
No 200
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=59.11 E-value=62 Score=26.30 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=38.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEe---ccCCCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akI---Dq~~giV~F~ 351 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-.- |+....|...
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 113 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 4679999999999999999999999999999997665 4444444443
No 201
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.05 E-value=24 Score=29.01 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
-.++|...||+.+|+|+.-+-..+.+|...|.+. +.+|..
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 4789999999999999999999999999999774 556754
No 202
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.85 E-value=32 Score=27.17 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=35.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~ 344 (394)
...++...||+.+|+|..-+-..+.+|...|-+.-.-|..
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 3579999999999999999999999999999998776643
No 203
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.70 E-value=50 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=39.4
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC---EEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g---iV~F~ 351 (394)
...++...||+.+|++..-+=..+.+|+..|-|.-.-|..++ .|...
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 467999999999999999999999999999999877765544 44444
No 204
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=57.56 E-value=1.2e+02 Score=27.89 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
......++.++...|++++|...+....--. + .-...+.....++...|++..|....+++-.. +|
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p---- 268 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS----P--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL----QP---- 268 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----CS----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----c--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC----
Confidence 3456778888888888888888776533211 1 11345566778888888888888888887643 11
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
...+ .+...+..+...++|-+|...|......
T Consensus 269 ------------------~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 269 ------------------HFPD----AYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp ------------------SCHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ------------------CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1112 2445566677778888888888877753
No 205
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=57.50 E-value=55 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=35.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
.++...||+.+|++..-+-..+.+|+..|-|.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 6999999999999999999999999999999776654443
No 206
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=57.05 E-value=58 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=34.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR 343 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq 343 (394)
...+...||+.+|+|..-+-..+..|...|-+...-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 67999999999999999999999999999999876443
No 207
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=56.50 E-value=49 Score=25.53 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=37.5
Q ss_pred cCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+++..|++.+ |+|+.-+=..|.+|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 99999999999999999999888875443
No 208
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=56.49 E-value=71 Score=25.31 Aligned_cols=48 Identities=21% Similarity=0.082 Sum_probs=35.3
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEec
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQV 352 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~~ 352 (394)
... +|...||+.+|+|..-+=..+.+|...|-|.-.-| +....|....
T Consensus 49 ~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~ 99 (146)
T 3tgn_A 49 EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTD 99 (146)
T ss_dssp TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECG
T ss_pred hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECH
Confidence 345 99999999999999999999999999999987774 4444454443
No 209
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.43 E-value=14 Score=30.63 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=36.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE--EeccCCCE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA--KIDRPQGI 347 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a--kIDq~~gi 347 (394)
..-+|.+.||+.+|+|+.++.+.|..|+..|-|.= +.|..+++
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 45589999999999999999999999999998854 55665444
No 210
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=56.42 E-value=33 Score=27.50 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=35.9
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
....+|.+.||+.+|+++.-+=..+.+|+..|-|.-.-| +....|...
T Consensus 51 ~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT 101 (148)
T 3nrv_A 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
T ss_dssp HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEEC
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEEC
Confidence 355899999999999999999999999999998876554 434445444
No 211
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=56.29 E-value=54 Score=27.73 Aligned_cols=60 Identities=17% Similarity=0.023 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhc--CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 293 IIEHNILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 293 viEHNI~visk~Y--~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
+.-|-+..++... ..+|.+.||+.+|+|+..+++.+..|...|-+...=-+..|+.--.+
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 3445555566554 35999999999999999999999999999999887555556554333
No 212
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=56.28 E-value=48 Score=24.99 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=59.8
Q ss_pred HhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCccccc
Q 016147 74 EQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 153 (394)
Q Consensus 74 ~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (394)
..|++++|...++..--- ..+...-...+.....++...++|..|..+..++-... |
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p---------------- 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----P---------------- 58 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----------------
T ss_pred CCCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----------------
Confidence 357888888877763311 12245667889999999999999999999999987542 1
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 154 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 154 ~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+.. ..+..++..+...++|-+|-..|.....
T Consensus 59 ------~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 59 ------NHQ----ALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp ------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------Cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2244556777788899998888887775
No 213
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=56.03 E-value=88 Score=27.15 Aligned_cols=93 Identities=9% Similarity=0.026 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhc----cCChHHHHHHHHhhCccccCCCC
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD----RQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~----~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
+.....||.++...|++++|...++..-- .+ -.+.+.....++.. .+|+.+|..+.+|+...- .
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~- 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y- 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C-
Confidence 44567889999999999999998876432 11 12456677888888 999999999999886431 0
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYE 194 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~----~~~flea~k~y~ei~~ 194 (394)
. ..+...+..+.. .++|-+|...|.....
T Consensus 74 ------------------------~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 74 ------------------------S----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp ------------------------H----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ------------------------H----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 0 113344556666 7888888888887775
No 214
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=55.98 E-value=91 Score=26.18 Aligned_cols=117 Identities=8% Similarity=-0.060 Sum_probs=74.0
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhcc-CC--------------CChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH
Q 016147 7 LFIIRSVYLFLQAVTAMVQQAMQYID-QT--------------PDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKI 71 (394)
Q Consensus 7 ~~l~k~r~q~k~ai~~~v~~~~~~~~-~~--------------~d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i 71 (394)
+...-+.|+..+|+.. .+.+...-+ .- .+.+.-+...+......++ .......+|.+
T Consensus 14 g~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~ 85 (228)
T 4i17_A 14 GNDALNAKNYAVAFEK-YSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-------LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-------HHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHH-HHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-------hHHHHHHHHHH
Confidence 4444567888888876 444554432 11 1112222222222223333 35567889999
Q ss_pred HHHhcCHHHHHHHHHHhhhhhcc-cCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 72 KEEQGLIAEAADLMQEVAVETFG-AMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 72 ~e~~gd~~eAa~iL~~i~vEt~~-~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
|...|++++|.+.+...---... ..-.....+.+.....++...+++..|....+++-..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999998874321111 1112234478889999999999999999999998754
No 215
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=55.98 E-value=38 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.039 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhc--CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEE
Q 016147 294 IEHNILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348 (394)
Q Consensus 294 iEHNI~visk~Y--~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV 348 (394)
.-|-+..++... ..+|.+.||+.+|+|+..+++.+..|...|-+...=-+..|+.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 344555566544 3599999999999999999999999999999887544444544
No 216
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=55.86 E-value=14 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred hhcCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcE
Q 016147 303 KYYSRITLKRLAELL-CLSIQEAEKHLSDMVVSKAL 337 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l 337 (394)
+.=++..|..++.+| +..+-++-+.+..||.+|++
T Consensus 17 ~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred cccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 345566799999999 99999999999999999987
No 217
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=55.80 E-value=54 Score=26.48 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=37.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEe---ccCCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKI---DRPQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akI---Dq~~giV~F~~ 352 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-.- |+....+....
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 4679999999999999999999999999999997554 44444455543
No 218
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=55.62 E-value=27 Score=27.96 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=29.8
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+|.+.||+.+|+++.-+=..+.+|+..|-|.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 457999999999999999999999999999999776665444
No 219
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=55.40 E-value=49 Score=22.93 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHH
Q 016147 96 MAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRY 175 (394)
Q Consensus 96 m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~ 175 (394)
++.....+.+......+...+++..|..+.+++-... | .. ...+..++..
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~----------------------~~----~~~~~~l~~~ 52 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P----------------------NN----AEAWYNLGNA 52 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----------------------TC----HHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----C----------------------CC----HHHHHHHHHH
Confidence 4445566788888999999999999999999887531 1 11 1224455677
Q ss_pred HHhhhhHHHHHHHHHHHhcc
Q 016147 176 YSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 176 ~~~~~~flea~k~y~ei~~t 195 (394)
+...++|-+|...|......
T Consensus 53 ~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 53 YYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 77889999999999888763
No 220
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=55.23 E-value=36 Score=26.54 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=44.6
Q ss_pred HhCCCHHHHHHHHHHhHhcCcEEEEeccCCC--EEEEecCCChHHHHHHHHHHHHHHHHHHHHH
Q 016147 316 LLCLSIQEAEKHLSDMVVSKALVAKIDRPQG--IVCFQVAKDSNDILNSWAMNLEKLLDLVEKS 377 (394)
Q Consensus 316 lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g--iV~F~~~k~~~~~L~~W~~~I~~l~~~V~k~ 377 (394)
.+++++.-+=..|.+|..+|-|...-+..+| -..+.=.....+.+..|......+...++++
T Consensus 35 ~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~ 98 (108)
T 3l7w_A 35 IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGI 98 (108)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887654333 2233322234578888888888777777654
No 221
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=55.18 E-value=64 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=37.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+|.+.||+.+|++..-+=..+.+|+..|-|.-.-|..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 458999999999999999999999999999999887766554
No 222
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=55.16 E-value=73 Score=24.85 Aligned_cols=66 Identities=9% Similarity=-0.051 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016147 100 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 179 (394)
Q Consensus 100 eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~ 179 (394)
.-.+.+......++..++|..|..+.+++... +| .. ..++...+..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p----------------------~~----~~~~~~lg~~~~~~ 65 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML----DH----------------------YD----ARYFLGLGACRQSL 65 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT----------------------TC----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh----CC----------------------cc----HHHHHHHHHHHHHH
Confidence 34677888899999999999999999988753 11 11 13355667778889
Q ss_pred hhHHHHHHHHHHHhcc
Q 016147 180 NDYLEICRCYKAIYEI 195 (394)
Q Consensus 180 ~~flea~k~y~ei~~t 195 (394)
++|-+|-.+|......
T Consensus 66 g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 66 GLYEQALQSYSYGALM 81 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999988863
No 223
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=54.94 E-value=98 Score=26.25 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=92.9
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhccCCC--------------ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHH
Q 016147 5 LLLFIIRSVYLFLQAVTAMVQQAMQYIDQTP--------------DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAK 70 (394)
Q Consensus 5 ~~~~l~k~r~q~k~ai~~~v~~~~~~~~~~~--------------d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~ 70 (394)
.+.....+.|+..+|+.. .+.+...=|..+ +.+.-+...+..-...|+. ......||.
T Consensus 10 ~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~ 81 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTL-FERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-------LGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHTTCHHHHHHH-HHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHH
Confidence 345556678889999876 445544322221 1122222222222233332 345678899
Q ss_pred HHHHh-----------cCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 71 IKEEQ-----------GLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 71 i~e~~-----------gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
++... |++++|...+...---. + .-.+.+.....++...|++..|....+++-... . .
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~--- 150 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN----P--RYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-T--- 150 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-C---
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----c--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-c---
Confidence 99999 99999999887643211 1 123567778889999999999999999987643 1 1
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
. ..+...+..+...++|-+|-..|.....
T Consensus 151 ----------------------~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 151 ----------------------P----EIRSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp ----------------------H----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------h----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1234556777888999999999988876
No 224
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=54.75 E-value=15 Score=36.63 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhhC
Q 016147 103 AFILEQVRLCLDRQDYVRAQILSRKIS 129 (394)
Q Consensus 103 e~~Leq~rL~L~~~D~~~a~~~~~Ki~ 129 (394)
..+.....++...++|..|....+|+-
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334444444444455555544444443
No 225
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.59 E-value=66 Score=24.20 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|..+...|++++|...+...-- ... .-...+.....++...|++..|....+++-..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIE-KDP-----NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCC-----CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 35678899999999999999998876431 111 11457888899999999999999999988754
No 226
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.70 E-value=55 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=39.1
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~~ 352 (394)
...++...||+.+|++..-+=..+.+|+..|-|.-.-| +-...|....
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 35899999999999999999999999999999976655 4444565553
No 227
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=53.67 E-value=32 Score=27.00 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.4
Q ss_pred cccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEE
Q 016147 307 RITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCF 350 (394)
Q Consensus 307 ~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F 350 (394)
++|+..|++.+ |+|..-+=..|..|...|-|.-+.+ +...+..
T Consensus 42 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~L 85 (111)
T 3df8_A 42 RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYAL 85 (111)
T ss_dssp CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEE
T ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEE
Confidence 36699999999 9999999999999999999998888 4433333
No 228
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=53.66 E-value=59 Score=23.33 Aligned_cols=64 Identities=6% Similarity=-0.202 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|.++...|++++|...+...-- ... .-.+.+...+.++...+++..|..+..++...
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKP-----DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-hCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34667889999999999999998887432 111 12456778889999999999999999988753
No 229
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=53.60 E-value=17 Score=28.20 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
..+|...||+.+|+|..-+-+.+..|...|-+...
T Consensus 32 ~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999999999999999999988654
No 230
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=52.73 E-value=84 Score=24.86 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=36.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
... |.+.||+.+|+++.-+=..+.+|+..|-|.-.-|..++-
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 344 999999999999999999999999999998877766553
No 231
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=52.66 E-value=71 Score=25.88 Aligned_cols=47 Identities=4% Similarity=0.188 Sum_probs=35.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
...++...||+.+|++..-+-..+.+|+..|-|.-.-| +....|...
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 110 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALS 110 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEEC
Confidence 56899999999999999999999999999999876554 444444443
No 232
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=51.95 E-value=44 Score=33.01 Aligned_cols=71 Identities=8% Similarity=-0.020 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhh---hhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVA---VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~---vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+.....||..|...|+|++|....+..- ...+|. +--.-...+.....+|...|+|..|..+..|+-..
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 467888899999999999999998877632 222332 22345666778899999999999999999999764
No 233
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=51.85 E-value=42 Score=25.22 Aligned_cols=45 Identities=7% Similarity=0.040 Sum_probs=38.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
++...||+.+|++..-+=..+..|...|-|...-|+-...|....
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 999999999999999999999999999999555565555666653
No 234
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=51.60 E-value=1.7e+02 Score=30.11 Aligned_cols=141 Identities=14% Similarity=0.059 Sum_probs=87.4
Q ss_pred HHhcCHHHHHHHHHHhhhhhc---ccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCc
Q 016147 73 EEQGLIAEAADLMQEVAVETF---GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDN 149 (394)
Q Consensus 73 e~~gd~~eAa~iL~~i~vEt~---~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~ 149 (394)
...|++++|.+.+....--.+ +... ..-.+.++...++++..+++..|....+++-... |
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p------------ 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----G------------ 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----C------------
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----c------------
Confidence 578999999998887540000 0111 1234678888999999999999999999887531 1
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCCChhchHhh
Q 016147 150 VVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLL 229 (394)
Q Consensus 150 ~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~~~~rs~ll 229 (394)
+.. ..+...+..+...++|-+|-.+|..+.... |......+..+..|.-+.-+.. ...+-
T Consensus 465 ----------~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 465 ----------WRW----RLVWYRAVAELLTGDYDSATKHFTEVLDTF-----PGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp ----------CCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred ----------chH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 111 224455677778999999999999988632 2222223344445566666655 54444
Q ss_pred hhhhcccCcCCChhHHHHHHHhc
Q 016147 230 NSTLEDKNLSEIPNFRLLLKQLV 252 (394)
Q Consensus 230 ~~l~~d~~l~~ip~~~~L~k~f~ 252 (394)
..+..||. ....+..+-.++.
T Consensus 525 ~al~~~P~--~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 525 TVWSTNDG--VISAAFGLARARS 545 (681)
T ss_dssp HHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHhCCc--hHHHHHHHHHHHH
Confidence 44445653 2334555555554
No 235
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=51.51 E-value=33 Score=27.74 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE--Eec---cCCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA--KID---RPQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a--kID---q~~giV~F~~ 352 (394)
...+|...||+.+|++..-+-..+.+|+..|-|.- .-| +....|....
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 35799999999999999999999999999999987 444 4444565553
No 236
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=50.32 E-value=38 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=35.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE---EEEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l---~akIDq~ 344 (394)
-.++|+..||+.+|+|+.-+-..+.+|...|-| .+.+|+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 468999999999999999999999999999977 4667765
No 237
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=49.81 E-value=95 Score=24.61 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccC----CCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHH
Q 016147 99 TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD----ADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIR 174 (394)
Q Consensus 99 ~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~ 174 (394)
-+..+.+.+....++..|+|..|.....++-...-. ..+..+ .| ..........+...+.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~nla~ 71 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP------EW----------VELDRKNIPLYANMSQ 71 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH------HH----------HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH------HH----------HHHHHHHHHHHHHHHH
Confidence 356677888899999999999999999988764211 000000 00 0012333455666677
Q ss_pred HHHhhhhHHHHHHHHHHHhccCCCCCChhcHHHHHHHHHHHHHhCCC
Q 016147 175 YYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPH 221 (394)
Q Consensus 175 ~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~~L~~av~~~ILap~ 221 (394)
.+...++|-+|-..|..+.... |......+..+..|.-+..+
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~~g~~~~~~g~~ 113 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKRE-----ETNEKALFRRAKARIAAWKL 113 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCcHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHhcH
Confidence 7888899999999998888642 33333334444445444433
No 238
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=49.32 E-value=1.5e+02 Score=28.89 Aligned_cols=100 Identities=6% Similarity=-0.007 Sum_probs=67.1
Q ss_pred HHHhcCHHHHHHHHHHhhhhhc-ccCc--HHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCC
Q 016147 72 KEEQGLIAEAADLMQEVAVETF-GAMA--KTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGD 148 (394)
Q Consensus 72 ~e~~gd~~eAa~iL~~i~vEt~-~~m~--~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~ 148 (394)
+...|++++|....+...- .. ..+. --.-+..+-..+.+|...|+|.+|..+..|+-......-+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~-~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg----------- 364 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIIS-SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP----------- 364 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHT-CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred HHhhccHHHHHHHHHHHHH-hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-----------
Confidence 4467899999988765432 22 2222 2346777777899999999999999999998764321111
Q ss_pred cccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 149 NVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 149 ~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
+...+.-..++. ++..|.+.++|-+|-..|..+..
T Consensus 365 ----------~~Hp~~a~~l~n-La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 365 ----------GSHPVRGVQVMK-VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------SSCHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCChHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Confidence 123444444444 45666778899999988877664
No 239
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=49.23 E-value=1.5e+02 Score=26.60 Aligned_cols=64 Identities=8% Similarity=-0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
......+|.++...|++++|.+.+...--- .. .-.+.+.....++...|++..|..+..++...
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLEL-KP-----DNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999988864321 11 12457788899999999999999999988653
No 240
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=48.95 E-value=1e+02 Score=24.59 Aligned_cols=66 Identities=8% Similarity=-0.025 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016147 100 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 179 (394)
Q Consensus 100 eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~ 179 (394)
.-.+.+......++..|+|..|....+++-.. +| .. -.++...+..+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p----------------------~~----~~~~~~lg~~~~~~ 68 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DH----------------------YD----SRFFLGLGACRQAM 68 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT----------------------TC----HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----Cc----------------------cc----HHHHHHHHHHHHHH
Confidence 44677888899999999999999999988643 11 11 12344566777889
Q ss_pred hhHHHHHHHHHHHhcc
Q 016147 180 NDYLEICRCYKAIYEI 195 (394)
Q Consensus 180 ~~flea~k~y~ei~~t 195 (394)
++|-+|-.+|..+...
T Consensus 69 g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 69 GQYDLAIHSYSYGAVM 84 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999998864
No 241
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=48.50 E-value=53 Score=25.43 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
..+++..||+.+|+|..-+-..+..|...|-|...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987654
No 242
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=48.09 E-value=17 Score=26.89 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHh-hcCcccHHHHHHHhCCCHHHHHHHHHHh
Q 016147 292 RIIEHNILVVSK-YYSRITLKRLAELLCLSIQEAEKHLSDM 331 (394)
Q Consensus 292 ~viEHNI~visk-~Y~~Isl~rLa~lL~ls~~e~E~~ls~M 331 (394)
+|.++=|-.+-- =|=+.+++.+|..+|++++++|..+..+
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444433332 2889999999999999999999988653
No 243
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.09 E-value=75 Score=26.47 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=36.6
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE---EEEeccC
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDRP 344 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l---~akIDq~ 344 (394)
+--.++|+..||+.+|+|+..+-.-+.+|..+|.| .|.+|..
T Consensus 13 ~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 13 QEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp TTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 34568899999999999999999999999999976 4778864
No 244
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=47.87 E-value=41 Score=27.16 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=37.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEecc---CCCEEEEe
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDR---PQGIVCFQ 351 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq---~~giV~F~ 351 (394)
...++...||+.++++..-+-..+.+|+..|-|.-..|. ....|...
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 108 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALT 108 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeEC
Confidence 467999999999999999999999999999999876644 33345544
No 245
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=47.70 E-value=1.6e+02 Score=26.70 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcc
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSK 139 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~ 139 (394)
.++.+...++.++...|++++|...+...---....-+.............++...|++..|..+..++-...-..+..
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~- 129 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE- 129 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-
Confidence 3566778899999999999999998876432111222334445666778899999999999999999886543211100
Q ss_pred ccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 140 EKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
. .......+...+..+...++|-+|-..|......
T Consensus 130 --------------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 130 --------------------Q-LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp --------------------T-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------c-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0 0112234445567777789999999999887753
No 246
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=47.17 E-value=82 Score=31.02 Aligned_cols=64 Identities=8% Similarity=-0.130 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
+.....+|..|...|++++|.+.++..-- +++ .-...+.....++...+++..|....+++-..
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE-----LDK-KYIKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678899999999999999998876331 111 12456777899999999999999999998754
No 247
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=47.09 E-value=61 Score=24.93 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
+.....||.++...|++++|...+...-- - ++ .-.+.+.....++...|++..|.....++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l----~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARM-L----DP-KDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H----CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45668899999999999999998876321 1 11 1135677888899999999999999998764
No 248
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=47.01 E-value=90 Score=23.50 Aligned_cols=64 Identities=11% Similarity=-0.087 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+|.++...|++++|...+...-- ... .-...+.....++...+++..|..+..++-..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALE-LDG-----QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCc-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567899999999999999998876432 111 12457888899999999999999999988754
No 249
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=45.66 E-value=31 Score=29.39 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.7
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE---EEEeccC
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDRP 344 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l---~akIDq~ 344 (394)
--.++++..||+.+|+|+.-+-..+.+|...|.| .|.+|..
T Consensus 38 ~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 38 NDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 3468999999999999999999999999999977 4566753
No 250
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=45.62 E-value=36 Score=27.17 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.9
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC---CEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ---GIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~---giV~F~~ 352 (394)
...+|.+.||+.+++++.-+=..+.+|+..|-|.-.-|..+ ..|....
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 56899999999999999999999999999999987765444 4555543
No 251
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=45.41 E-value=18 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=30.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
+|...||+.||+|...+-+.|-+|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998866
No 252
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=45.30 E-value=71 Score=25.67 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=48.4
Q ss_pred HHHHHHHHH-HHHhcCH--HHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKI-KEEQGLI--AEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i-~e~~gd~--~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+...+|.+ +...|++ ++|...+...--.... -...+....+++...|++..|..+.+++-..
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 455778888 8899998 9999988764422111 1356778899999999999999999998754
No 253
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=45.23 E-value=4.5 Score=37.72 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=0.0
Q ss_pred CcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEecc
Q 016147 306 SRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDR 343 (394)
Q Consensus 306 ~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq 343 (394)
.=|+++.|++.| +++++++.+.+..|+.+|.||..||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 456677888777 79999999999999999999999995
No 254
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=44.42 E-value=1.2e+02 Score=24.22 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=36.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~~ 352 (394)
...++...||+.+++++.-+=..+.+|+..|-|.-.-| +-...|....
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 47899999999999999999999999999999976654 4444555543
No 255
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.20 E-value=57 Score=24.23 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHhhcCcccHHHHHHHhC-----------CCHHHHHHHHHHhHhcCcEEE
Q 016147 298 ILVVSKYYSRITLKRLAELLC-----------LSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 298 I~visk~Y~~Isl~rLa~lL~-----------ls~~e~E~~ls~MI~~g~l~a 339 (394)
|..+-.-+.+..++|+...|. +|.++.+.+|..+|.+|++.+
T Consensus 13 I~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 13 IEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 333333345555555544432 345788889999999998863
No 256
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.89 E-value=32 Score=28.28 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=34.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE---EEEecc
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL---VAKIDR 343 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l---~akIDq 343 (394)
-.++|+..||+.+|+|+.-+-..+.+|...|.| .|.+|.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 468999999999999999999999999999977 355665
No 257
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=43.60 E-value=53 Score=26.00 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=36.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
...++...||+.+|+|..-+-..+.+|...|-|.-.-|..+
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d 89 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVD 89 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSS
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCC
Confidence 45799999999999999999999999999999987766433
No 258
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=43.21 E-value=39 Score=25.29 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=36.7
Q ss_pred cccHHHHHHHhCCCHHH-HHHHHHHhHhcCcEE-EEeccCCCEEEEe
Q 016147 307 RITLKRLAELLCLSIQE-AEKHLSDMVVSKALV-AKIDRPQGIVCFQ 351 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e-~E~~ls~MI~~g~l~-akIDq~~giV~F~ 351 (394)
.+|.+.||+.+|++..- +=..+.+|+..|-|. ..-|+....|...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT 76 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLT 76 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEEC
Confidence 69999999999999999 999999999999996 2334554455544
No 259
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=42.14 E-value=96 Score=32.06 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
+.....+|..+...|++++|...+...--.... -.+.+.....+++..+++..|....+|+-..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346678899999999999999988764432111 1457778888999999999999999998754
No 260
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=41.80 E-value=1.7e+02 Score=25.21 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=61.6
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhc----cCChHHHHHHHHhhCccccCC
Q 016147 64 LIKKLAKIKEE----QGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLD----RQDYVRAQILSRKISPRVFDA 135 (394)
Q Consensus 64 l~~~La~i~e~----~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~----~~D~~~a~~~~~Ki~~~~~~~ 135 (394)
....|+.+|.. .|++++|.+.+...--- + -.+.+.....++.. .+|+.+|..+.+|+...-
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 108 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--- 108 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---
Confidence 44678888888 89999998887763211 1 24566677788888 899999998888876420
Q ss_pred CCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhc
Q 016147 136 DPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYE 194 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~----~~~flea~k~y~ei~~ 194 (394)
. .+ -+...+..+.. .++|-+|...|.....
T Consensus 109 ~-------------------------~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 109 Y-------------------------AE----GCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp C-------------------------HH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred C-------------------------cc----HHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 0 11 12334455555 7788888888877775
No 261
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.79 E-value=60 Score=26.04 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=31.9
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
..+|...||+.++++..-+=..+.+|+..|-|.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999766555444
No 262
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.71 E-value=1.5e+02 Score=24.97 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQG---LIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~g---d~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+.+..+|--+...+ ++.+|..+|.++--.. ++..+-|.+...+--|...+||.+|..+.+++-..
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456677777776666 8889999999865432 34466777777777889999999999999998754
No 263
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.66 E-value=37 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=31.4
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
-.+++++.||+.+|+|+.-+-+.+.+|...|-+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 4678999999999999999999999999999874
No 264
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=41.48 E-value=1.9e+02 Score=25.76 Aligned_cols=68 Identities=6% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...++.++...|++++|..++...--. ..+++....+++..-+++....|++..|..+.+++...
T Consensus 203 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456688899999999999999988864321 12455556778888889999999999999999998765
No 265
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=41.45 E-value=35 Score=28.24 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=36.2
Q ss_pred HHHHHHHhh-cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 296 HNILVVSKY-YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 296 HNI~visk~-Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
|-+..++.. =..+|.+.||+.+|+|+..+++.+..|...|-+...=-
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 444444442 13589999999999999999999999999998876433
No 266
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=41.43 E-value=37 Score=27.62 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
.....++...||+.+|++..-+=..+.+|+..|-|.-.-| +..-.|...
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 109 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLT 109 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEEC
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEC
Confidence 3456899999999999999999999999999999976544 444445444
No 267
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.17 E-value=1.5e+02 Score=28.56 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHHHHhccCCCChHHHHHHHHHhhhhc-----------------CCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 016147 25 QQAMQYIDQTPDLDTRIELIKTLNSVS-----------------AGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQE 87 (394)
Q Consensus 25 ~~~~~~~~~~~d~~~k~~~i~~L~~vt-----------------~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~ 87 (394)
+-++....+.+|.+..+++++.+.... ++.+ .+....+.+|-..||..+|-+.|..
T Consensus 80 ~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l-------~i~~~i~~~yl~~~d~~~a~~~l~~ 152 (393)
T 4b4t_O 80 KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGIL-------LIDSEIARTYLLKNDLVKARDLLDD 152 (393)
T ss_dssp HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHH-------HHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334444456677777788877653311 3334 4456667777778888888888877
Q ss_pred hh--hhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHh
Q 016147 88 VA--VETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRK 127 (394)
Q Consensus 88 i~--vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~K 127 (394)
+. ++..+..+..-...|+.-...++-..++|..+....-.
T Consensus 153 ~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~ 194 (393)
T 4b4t_O 153 LEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLL 194 (393)
T ss_dssp HHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 65 23334556666677777778888888888777664433
No 268
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=41.08 E-value=65 Score=25.23 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=36.5
Q ss_pred hhcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEE
Q 016147 303 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348 (394)
Q Consensus 303 k~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV 348 (394)
.+=+++ |...||+.||+|..-+-+.+..|..+|-|..+ +..|..
T Consensus 28 ~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~ 72 (113)
T 3tqn_A 28 VEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGML 72 (113)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEE
Confidence 456788 89999999999999999999999999987654 445543
No 269
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.96 E-value=1.4e+02 Score=24.17 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=38.9
Q ss_pred HHhhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 301 VSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 301 isk~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
+.+.-..++.+.||+.+|++..-+=..+.+|+..|-|.-.-|..++
T Consensus 40 L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 40 INRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 3444456778999999999999999999999999999888777666
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.56 E-value=2.7e+02 Score=27.20 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh
Q 016147 99 TEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH 178 (394)
Q Consensus 99 ~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~ 178 (394)
.+...+...-++++.+.|||..|..++..+..-.+.. .+...|+.|+....++|..
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~------------------------~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS------------------------MEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS------------------------SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHHHHHH
Confidence 3456666777899999999999999998887543321 2357899999999999999
Q ss_pred hhhHHHHHHHHHHHh
Q 016147 179 NNDYLEICRCYKAIY 193 (394)
Q Consensus 179 ~~~flea~k~y~ei~ 193 (394)
.+||..|--.+..+.
T Consensus 190 ~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 190 KGDYSQATVLSRKIL 204 (445)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999988766665543
No 271
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=39.57 E-value=1.9e+02 Score=25.62 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhhhc-----c-cCcHHH--HHHHHHHH-HHHHhccCChHHHHHHHHhhCccccCCCC
Q 016147 67 KLAKIKEEQGLIAEAADLMQEVAVETF-----G-AMAKTE--KIAFILEQ-VRLCLDRQDYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 67 ~La~i~e~~gd~~eAa~iL~~i~vEt~-----~-~m~~~e--K~e~~Leq-~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
.|.+.++ .+|++.|.++|..+.++-- . +-+..+ -...++|+ +|++++.+|......+.......+.+..+
T Consensus 13 ~L~~~~~-~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 13 HLADLYD-RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC
Confidence 4555555 5799999999999876532 1 122222 34566666 99999999999999988888877654221
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHH
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEIC 186 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~ 186 (394)
. ...+..|.-+.+.|..+.++.-|--
T Consensus 92 ~-----------------------s~~~~e~~~~~LL~lL~~~~~~ef~ 117 (229)
T 4b0z_A 92 P-----------------------SSRMGLVTGLNLLYLLSENRIAEFH 117 (229)
T ss_dssp C-----------------------CTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-----------------------CccHHHHHHHHHHHHHHcCCchHHH
Confidence 1 1234456667677778888776643
No 272
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=39.01 E-value=79 Score=27.14 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=39.4
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHH
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 364 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~ 364 (394)
--.+|-+.||..+|+|++-+-+.+++|..+|-|.-. .|-|...++ +.|..+.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~----~~~i~i~d~----~~L~~~~ 229 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLALD----GKRIKIIDC----DRLQKTA 229 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE----TTEEEESCH----HHHHHHH
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC----CCEEEEeCH----HHHHHHh
Confidence 357899999999999999999999999999987432 344555443 4555544
No 273
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=38.67 E-value=85 Score=25.44 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=35.4
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
..+|.+.||+.++++..-+=..+.+|+..|-|.-.-|..++=
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 50 GELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp GEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 459999999999999999999999999999998887766653
No 274
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=38.43 E-value=1.1e+02 Score=22.23 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhH
Q 016147 103 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 182 (394)
Q Consensus 103 e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~f 182 (394)
+.+.....+++..|+|..|..+..++-... |. .. ..+..++..+...++|
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~----------------------~~----~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD----PD----------------------YV----GTYYHLGKLYERLDRT 57 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TT----------------------CT----HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----------------------cH----HHHHHHHHHHHHcCCH
Confidence 466778889999999999999999987541 11 11 1355667788889999
Q ss_pred HHHHHHHHHHhc
Q 016147 183 LEICRCYKAIYE 194 (394)
Q Consensus 183 lea~k~y~ei~~ 194 (394)
-+|...|.....
T Consensus 58 ~~A~~~~~~al~ 69 (100)
T 3ma5_A 58 DDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 275
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=38.43 E-value=49 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=35.0
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE---EEeccC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV---AKIDRP 344 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~---akIDq~ 344 (394)
-.+++...||+.+|+|+.-+-..+.+|...|-|. +.+|..
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 4579999999999999999999999999999875 467753
No 276
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=38.38 E-value=1.5e+02 Score=23.77 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 65 IKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 65 ~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
...+|..+...|++++|...+...--.. ..-.+.+....++++..|++..|....+++..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3567888999999999999887633211 12246778888999999999999999998764
No 277
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=38.31 E-value=46 Score=26.52 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=38.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec---cCCCEEEEe
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID---RPQGIVCFQ 351 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID---q~~giV~F~ 351 (394)
..++...||+.+|++..-+-..+.+|...|-|.-..| +....|...
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT 101 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT 101 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEEC
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 4799999999999999999999999999999876654 444445544
No 278
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=38.31 E-value=2.1e+02 Score=25.37 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCcccc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEK 141 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~ 141 (394)
......||.++...|++++|...+..+.-.. +.. ....+.....+...++...|.....++-.. +|
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P---- 216 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQD----QDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAE----NP---- 216 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----CSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CT----
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----cch--HHHHHHHHHHHHhhcccCccHHHHHHHHhc----CC----
Confidence 4567899999999999999999998764321 111 122222233344556666676666666543 11
Q ss_pred CCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 142 KKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
+..+. +...+..+...++|-+|-..|..+...
T Consensus 217 ------------------~~~~~----~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 217 ------------------EDAAL----ATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp ------------------TCHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------ccHHH----HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 12222 334457777889999999999998864
No 279
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=37.87 E-value=86 Score=25.72 Aligned_cols=42 Identities=5% Similarity=0.026 Sum_probs=34.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGI 347 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~gi 347 (394)
..+|...||+.++++..-+=..+.+|+..|-|.-.-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 489999999999999999999999999999998877766653
No 280
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=37.70 E-value=60 Score=26.41 Aligned_cols=63 Identities=13% Similarity=-0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhh
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKI 128 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki 128 (394)
......||.++...|++++|...+..+---. +.......+.....++...|++..|....+|+
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVN----LGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4567889999999999999999888743211 11111234445567788888988888877765
No 281
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=37.53 E-value=49 Score=25.42 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHH
Q 016147 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKE 73 (394)
Q Consensus 36 d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e 73 (394)
+.+.|.++|+....-.....+.|+|.|-+|.....+-+
T Consensus 3 ~~~~K~~ii~~~~~~~~DTGS~EvQiA~LT~rI~~L~~ 40 (88)
T 4a5u_B 3 STEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQG 40 (88)
T ss_dssp CHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45788899998888778899999999999988776643
No 282
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=37.08 E-value=1.1e+02 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=36.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
..+++..||+.+|+|..-+-..+..|...|-+...-+. +-+.|.-
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g--r~~~y~l 82 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG--QSMIYSL 82 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET--TEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC--CEEEEEE
Confidence 46899999999999999999999999999999765442 3444443
No 283
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=36.99 E-value=1.4e+02 Score=23.55 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=41.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHHHHHHHHH
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLD 372 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~~I~~l~~ 372 (394)
+..++++...|+++++++..+..++..|.+..- +.-.+...|.. +.+..|...+...+.
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~l~~~L~ 76 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAIST-----ERYQAWWQAVTRALE 76 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEH-----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecH-----HHHHHHHHHHHHHHH
Confidence 444999999999999999999999999986443 33122213443 466677766655554
No 284
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=36.71 E-value=93 Score=26.77 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhh
Q 016147 102 IAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNND 181 (394)
Q Consensus 102 ~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~ 181 (394)
+=.+++|++-.++.+-|..|+...+++....-. ++. .-..+.+-.-+-+.+..+-+.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~--------------------~~sp~~~~~~l~~ladalf~~~e 78 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPE--------------------LFSPPQKYQLLVYHADSLFHDKE 78 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STT--------------------SSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Ccc--------------------cccHHHHHHHHHHHHHHHHcccH
Confidence 345789999999999999999999997654311 110 01245666666666677778999
Q ss_pred HHHHHHHHHHHhc
Q 016147 182 YLEICRCYKAIYE 194 (394)
Q Consensus 182 flea~k~y~ei~~ 194 (394)
|-.|...|..+..
T Consensus 79 yrrA~~~y~qALq 91 (167)
T 3ffl_A 79 YRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 285
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=36.38 E-value=92 Score=24.91 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=36.4
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE-----EeccCCCEEEEe
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA-----KIDRPQGIVCFQ 351 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a-----kIDq~~giV~F~ 351 (394)
....+|.+.||+.+|++..-+=..+.+|+..|-|.- .-|+..-.|...
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT 100 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLS 100 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEEC
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEEC
Confidence 457899999999999999999999999999999975 234444445544
No 286
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=35.85 E-value=52 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=35.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
..++...||+.+|+|..-+-..+..|...|-+...- |......
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~ 84 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTD 84 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECC
Confidence 458999999999999999999999999999987532 5444443
No 287
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=35.60 E-value=66 Score=27.17 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=40.7
Q ss_pred HHHHHHHHhh-cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEE
Q 016147 295 EHNILVVSKY-YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIV 348 (394)
Q Consensus 295 EHNI~visk~-Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV 348 (394)
-|-+..++.. =..+|.+.||+.+|+|+..+++++..|...|-+.+.=-+..|+.
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 3445455543 24599999999999999999999999999998876544434443
No 288
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=35.47 E-value=4.3e+02 Score=30.74 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
..+|+.++++|++.+|...... ...+...++.++..|++..|-...+|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~k--------------A~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNN--------------VSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHh--------------hhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 4588999999999999986665 35788888999999999999999999965
No 289
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=35.46 E-value=34 Score=34.30 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHh
Q 016147 169 YELMIRYYSHNNDYLEICRCYKAIY 193 (394)
Q Consensus 169 ~~~~~~~~~~~~~flea~k~y~ei~ 193 (394)
|..++.-+.+-++|-+|-.+|....
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcC
Confidence 4456666777888889999998884
No 290
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.25 E-value=95 Score=26.22 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=38.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHH
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 364 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~ 364 (394)
-.+|-+.||..+|+|++-+-+.+++|..+|-|.- ..|-|...++ +.|..++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~----~~L~~~a 218 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDS----KRLETLQ 218 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH----HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH----HHHHHHh
Confidence 3788999999999999999999999999998743 2455555443 4455443
No 291
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.09 E-value=77 Score=25.04 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
..+++..||+.+|+|..-+-..|..|...|-+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999988764
No 292
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=34.85 E-value=56 Score=25.38 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHH
Q 016147 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIK 72 (394)
Q Consensus 36 d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~ 72 (394)
+.+.|.++|+....-.....+.|+|.|-+|.....+-
T Consensus 7 ~~~~K~~ii~~~~~~~~DTGS~EVQIA~LT~rI~~L~ 43 (93)
T 3ulw_A 7 DSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELT 43 (93)
T ss_dssp CHHHHHHHHHHHCSSTTCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4588899999988877889999999999998776653
No 293
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=34.82 E-value=78 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=36.8
Q ss_pred hhcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEE
Q 016147 303 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 349 (394)
Q Consensus 303 k~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~ 349 (394)
++=.++ |...||+.||+|..-+-+.+..|..+|-|..+ +..|...
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V 77 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFV 77 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEE
Confidence 456788 69999999999999999999999999988654 3346544
No 294
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=34.66 E-value=93 Score=25.52 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=37.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
....+++.|++.+|+|..-+=..|..|...|-|.-..|..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 567999999999999999999999999999999888875544
No 295
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=34.50 E-value=1.2e+02 Score=21.45 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHH
Q 016147 106 LEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEI 185 (394)
Q Consensus 106 Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea 185 (394)
+...+.++..++|..|....+++-... | .... +.+..++..+...++|-+|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p----------------------~~~~---~~~~~lg~~~~~~~~~~~A 54 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----P----------------------VGKD---EAYYLMGNAYRKLGDWQKA 54 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----S----------------------STHH---HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----C----------------------CcHH---HHHHHHHHHHHHcCCHHHH
Confidence 567788899999999999999886531 1 1111 1345566777788999999
Q ss_pred HHHHHHHhcc
Q 016147 186 CRCYKAIYEI 195 (394)
Q Consensus 186 ~k~y~ei~~t 195 (394)
...|..+...
T Consensus 55 ~~~~~~al~~ 64 (99)
T 2kc7_A 55 LNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999888763
No 296
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=34.12 E-value=1.6e+02 Score=22.62 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016147 100 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 179 (394)
Q Consensus 100 eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~ 179 (394)
+..+.+-+....++..|||..|....+++-.. +| .. ...+...+..+...
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p----------------------~~----~~~~~~~~~~~~~~ 60 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DP----------------------EN----AILYSNRAACLTKL 60 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT----------------------TC----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC----------------------CC----HHHHHHHhhHHHhh
Confidence 44566667788899999999999999988643 11 11 12355566777788
Q ss_pred hhHHHHHHHHHHHhc
Q 016147 180 NDYLEICRCYKAIYE 194 (394)
Q Consensus 180 ~~flea~k~y~ei~~ 194 (394)
++|-+|-..|..+..
T Consensus 61 ~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 61 MEFQRALDDCDTCIR 75 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988876
No 297
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.56 E-value=62 Score=22.54 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=25.7
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHh
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVV 333 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~ 333 (394)
+..-|.+.+|+.+|+|+.-+...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999988887654
No 298
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=33.46 E-value=67 Score=24.66 Aligned_cols=42 Identities=12% Similarity=-0.055 Sum_probs=36.6
Q ss_pred cCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
...+++..|++.+ |+|..-+=..|..|...|-|..+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 59999999999999999999887765443
No 299
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.21 E-value=90 Score=27.94 Aligned_cols=64 Identities=9% Similarity=-0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
+.+...+|.+|...|++++|...+...-- .-+. -...+.....++...|++..|..+..++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALE----LDGQ--SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567899999999999999998876331 1111 1356677788999999999999999988654
No 300
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.09 E-value=65 Score=31.03 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHHHHH---hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 293 IIEHNILVVS---KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 293 viEHNI~vis---k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
+.++|.+.|- +-...+|-..||+.+|+|..-+-+.+.+|+.+|-+.
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3456644333 346789999999999999999999999999999874
No 301
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.98 E-value=35 Score=27.62 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=31.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
+|.+.||+.+|+|+..+-..+..++..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 89999999999999999999999999998866555
No 302
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=32.85 E-value=1.8e+02 Score=22.90 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
...++..||+.+|+|..-+-..+..|...|-+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999999999999999999998876544
No 303
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=32.59 E-value=1e+02 Score=23.09 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhH
Q 016147 103 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 182 (394)
Q Consensus 103 e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~f 182 (394)
+-++++.+.+...+||.+|.....++-...-..... + ..+...+...+.-+...++|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~---------------------~--~~~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS---------------------T--IDKVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC---------------------S--SCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC---------------------c--ccHHHHHHHHHHHHHHccCH
Confidence 457899999999999999999999987653211100 0 01123345556666677888
Q ss_pred HHHHHHHHHHhc
Q 016147 183 LEICRCYKAIYE 194 (394)
Q Consensus 183 lea~k~y~ei~~ 194 (394)
-+|-..|.++..
T Consensus 63 ~~A~~~~~~al~ 74 (104)
T 2v5f_A 63 DKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887774
No 304
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=32.33 E-value=67 Score=24.65 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHH
Q 016147 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKE 73 (394)
Q Consensus 36 d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e 73 (394)
+.+.|-++|+....-.....+.|+|.|-+|.....+-+
T Consensus 3 ~~~~K~~ii~~~~~~~~DtGS~EvQiA~LT~rI~~Lt~ 40 (88)
T 3r8n_O 3 STEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQG 40 (88)
T ss_dssp CHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678888888877777789999999999988877643
No 305
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=31.98 E-value=1.6e+02 Score=30.07 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 171 LMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 171 ~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.+...+...+++-+|-+.|.+...
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCC
Confidence 344556667888888888887663
No 306
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.83 E-value=76 Score=27.58 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=37.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC---EEEEe
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG---IVCFQ 351 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g---iV~F~ 351 (394)
..+|...||+.++++..-+=..+.+|+..|-|.-.-|..++ .|...
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 109 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLT 109 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEEC
Confidence 57999999999999999999999999999999877765544 44444
No 307
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=31.79 E-value=90 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=34.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
-.+|-+.||..+|+|++-+-+.+++|..+|-|.- ..|-|...+
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 218 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISD 218 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcC
Confidence 3589999999999999999999999999997743 234555543
No 308
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=31.72 E-value=2.8e+02 Score=24.67 Aligned_cols=63 Identities=6% Similarity=0.088 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHH-HHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIA-FILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e-~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
..+...++.+++..|++++|..++...-- . ++. ..+ .++.-+.++...+++..|..+..|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~----~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I----EDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S----SSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c----ccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35678899999999999999998887432 1 111 112 677788888999999999999999875
No 309
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.45 E-value=91 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=34.5
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecC
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVA 353 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~ 353 (394)
.+|-+.||..+|+|++-+-+.+.+|..+|-|.- + .|-|...++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~--~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT--A--YRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE--E--TTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--c--CCEEEEeCH
Confidence 578999999999999999999999999998743 2 344555443
No 310
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=30.83 E-value=48 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
.+|-+.||..+|+|++-+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68999999999999999999999999999874
No 311
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.82 E-value=2.8e+02 Score=28.26 Aligned_cols=90 Identities=9% Similarity=-0.103 Sum_probs=55.8
Q ss_pred HHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCccc
Q 016147 72 KEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVV 151 (394)
Q Consensus 72 ~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~ 151 (394)
.-.-|++++|.++...+.- . ..+-..+++++..+|+..|+..+.++...--. ..++
T Consensus 662 ~l~~~~~~~A~~~~~~~~~--------~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l-------------~~l~ 717 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDESA--------E---MKWRALGDASLQRFNFKLAIEAFTNAHDLESL-------------FLLH 717 (814)
T ss_dssp HHHHTCHHHHHHHHTTCCC--------H---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH-------------HHHH
T ss_pred hhhcCCHHHHHHHHHhhCc--------H---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhh-------------HHHH
Confidence 3456777777776544321 1 46677789999999999999998888752100 0000
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 152 EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 152 ~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
... +.. .....++......++|..|..+|....+
T Consensus 718 ---~~~--~~~----~~~~~~~~~a~~~~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 718 ---SSF--NNK----EGLVTLAKDAETTGKFNLAFNAYWIAGD 751 (814)
T ss_dssp ---HHT--TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---HHc--CCH----HHHHHHHHHHHHcCchHHHHHHHHHcCC
Confidence 000 001 1133556777778999999989887764
No 312
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.72 E-value=79 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=37.8
Q ss_pred HHHHHHHHHH---hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 293 IIEHNILVVS---KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 293 viEHNI~vis---k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
+.++|-+.|- +-...+|-.+||+.+|+|..-+-+.+.+|+.+|-+.-
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3455554443 3367899999999999999999999999999998744
No 313
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=30.72 E-value=95 Score=24.86 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=37.0
Q ss_pred hhcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEE
Q 016147 303 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 349 (394)
Q Consensus 303 k~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~ 349 (394)
++=.++ |...||+.||+|..-+-+.+..|..+|-|..+ +..|...
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~--~g~G~~V 75 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI--PGKGTFI 75 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEE
Confidence 345688 99999999999999999999999999988653 4456544
No 314
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=30.48 E-value=3.4e+02 Score=25.38 Aligned_cols=82 Identities=10% Similarity=-0.073 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016147 100 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 179 (394)
Q Consensus 100 eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~ 179 (394)
...+.+......++..++|..|...++++-...-.. +. + ...+.+ ..........+...+..+...
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-~~-~--~~~~~~----------~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-RA-A--AEDADG----------AKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HH-H--SCHHHH----------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-cc-c--cChHHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 345567788999999999999999999887531100 00 0 000000 012234455666677778889
Q ss_pred hhHHHHHHHHHHHhcc
Q 016147 180 NDYLEICRCYKAIYEI 195 (394)
Q Consensus 180 ~~flea~k~y~ei~~t 195 (394)
++|-+|-.+|..+...
T Consensus 287 g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEI 302 (370)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999863
No 315
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=30.38 E-value=88 Score=24.79 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=32.5
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
.-..+|+..||+.+|+|..-+-+.+.+|...|-|.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 346799999999999999999999999999997764
No 316
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.25 E-value=1.1e+02 Score=26.03 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=30.9
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
--.+|-+.||..+|+|.+-+-+.+++|..+|-|.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3467889999999999999999999999999884
No 317
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=30.09 E-value=72 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH
Q 016147 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKI 71 (394)
Q Consensus 36 d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i 71 (394)
+.+.|-++|+....-.....+.|+|.|.+|.....+
T Consensus 3 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~L 38 (88)
T 1a32_A 3 TQERKREIIEQFKVHENDTGSPEVQIAILTEQINNL 38 (88)
T ss_dssp CHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 346788888877776677899999999999877665
No 318
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=29.75 E-value=1.4e+02 Score=27.59 Aligned_cols=63 Identities=11% Similarity=-0.103 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 63 RLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 63 ~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+...+|..|...|++++|...+...-- .. + .-...+....+.++..++|..|....+|+...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~-~~---p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLT-EE---E--KNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH-HC---T--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678899999999999999998876431 11 1 12456788899999999999999999999754
No 319
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.49 E-value=73 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=23.6
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
+....|...+|+.||+|..-+...+...-
T Consensus 18 ~~~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 45678999999999999998888776543
No 320
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=29.48 E-value=66 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHH
Q 016147 36 DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKE 73 (394)
Q Consensus 36 d~~~k~~~i~~L~~vt~gki~~E~era~l~~~La~i~e 73 (394)
+.+.|-++|+....-.....+.|+|.|.+|.....+-+
T Consensus 4 ~~~~K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~ 41 (89)
T 2vqe_O 4 TKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSE 41 (89)
T ss_dssp CHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45778888887777667789999999999988877643
No 321
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=29.32 E-value=1.2e+02 Score=24.28 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=37.8
Q ss_pred hhcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEE
Q 016147 303 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 349 (394)
Q Consensus 303 k~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~ 349 (394)
++=+++ |-..||+.||+|..-+-+-+..|..+|-|..+ +..|...
T Consensus 33 ~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V 78 (134)
T 4ham_A 33 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFI 78 (134)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence 566788 88899999999999999999999999998765 4456543
No 322
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.24 E-value=2.3e+02 Score=22.94 Aligned_cols=62 Identities=5% Similarity=0.082 Sum_probs=45.4
Q ss_pred cCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCCE-EEEe-cCC-----ChHHHHHHHHHH
Q 016147 305 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQGI-VCFQ-VAK-----DSNDILNSWAMN 366 (394)
Q Consensus 305 Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~gi-V~F~-~~k-----~~~~~L~~W~~~ 366 (394)
....+++.|++.+ |+|..-+=..|.+|..+|-|.-+.+..++- |.+. .++ +.-..+.+|...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 5678999999999 999999999999999999998776654332 2222 222 123567788754
No 323
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=28.73 E-value=49 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHh
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDM 331 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~M 331 (394)
|=+.+++.+|..+|++++++|..+..+
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 889999999999999999999988644
No 324
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=28.70 E-value=91 Score=26.82 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=32.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
.+|-+.||..+|+|.+-+-+.+.+|..+| | ..+ .|-|...+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d 218 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIED 218 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcC
Confidence 45678999999999999999999999999 6 343 35555543
No 325
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=28.51 E-value=1.3e+02 Score=26.08 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
.++|...||+.+|+|+.-+-..+..|...|-|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999655
No 326
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.49 E-value=81 Score=22.26 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=23.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
...|...+|+.+|+|+.-+...+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999999888776654
No 327
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.35 E-value=55 Score=27.70 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=39.5
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHH
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 364 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~ 364 (394)
--.+|-..||..+|+|++-+-+.+++|..+|-|.- + .|-|...++ +.|.++.
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~--~~~i~i~d~----~~L~~~a 212 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL--G--PGTVEVREA----ALLEEIA 212 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--E--TTEEEESCH----HHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--c--CCEEEEeCH----HHHHHHh
Confidence 45689999999999999999999999999998852 2 355555443 4555544
No 328
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=28.02 E-value=58 Score=28.00 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=31.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
--.+|-..||..+|+|++-+-+.+++|..+|-|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 4468999999999999999999999999999885
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.01 E-value=96 Score=22.33 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=37.1
Q ss_pred CcccHHHHHHHh-----CCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEe
Q 016147 306 SRITLKRLAELL-----CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQ 351 (394)
Q Consensus 306 ~~Isl~rLa~lL-----~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~ 351 (394)
.-+|.+.|++.+ ++|..-+-..|..|...|-+. ++.-++|...|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~-~~~~~~~~~~y~ 81 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT-RHNFEGGKSVFE 81 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE-EEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE-EEeeCCCceEee
Confidence 358999999999 999999999999999999886 455555555554
No 330
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.91 E-value=58 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=30.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
.+|-+.||..+|+|.+-+-+.+++|..+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 68899999999999999999999999999875
No 331
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=27.84 E-value=59 Score=27.42 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=35.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
-.+|-+.||..+|+|.+-+-+.+.+|..+|-|.- + .|-|...+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~--~~~i~i~d 187 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS--G--YGKIQLLD 187 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--E--TTEEEESC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--C--CCEEEEeC
Confidence 4588999999999999999999999999998752 2 35555544
No 332
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.81 E-value=2.4e+02 Score=22.73 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhh
Q 016147 100 EKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHN 179 (394)
Q Consensus 100 eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~ 179 (394)
.-.+.+......+...|+|..|..+.+++-.. +|. . -.++...+..+...
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~----------------------~----~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFY----------------------N----VDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT----------------------C----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------------------C----HHHHHHHHHHHHHH
Confidence 34667888899999999999999999998754 111 1 23466667788889
Q ss_pred hhHHHHHHHHHHHhcc
Q 016147 180 NDYLEICRCYKAIYEI 195 (394)
Q Consensus 180 ~~flea~k~y~ei~~t 195 (394)
++|-+|..+|......
T Consensus 84 g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 84 EQFQQAADLYAVAFAL 99 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988863
No 333
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=27.73 E-value=77 Score=24.54 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=36.3
Q ss_pred hcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEE
Q 016147 304 YYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 349 (394)
Q Consensus 304 ~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~ 349 (394)
+=..+ +...||+.||+|..-+-+.+..|..+|-|...=.-..|+..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 34566 99999999999999999999999999988664311345543
No 334
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=27.64 E-value=1.9e+02 Score=32.02 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhhhc--cc-Cc---HH-----------HHHHHHHHHHHHHhccCChHHHHHHHHh
Q 016147 65 IKKLAKIKEEQGLIAEAADLMQEVAVETF--GA-MA---KT-----------EKIAFILEQVRLCLDRQDYVRAQILSRK 127 (394)
Q Consensus 65 ~~~La~i~e~~gd~~eAa~iL~~i~vEt~--~~-m~---~~-----------eK~e~~Leq~rL~L~~~D~~~a~~~~~K 127 (394)
+..+|..+-..|++++|+..++.-..--. .. .. .- -...||+++++|+=..+-+..+-.+++.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999999999976321100 00 00 00 0236899999999888888888777776
Q ss_pred hCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCCCCChhcHHH
Q 016147 128 ISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMP 207 (394)
Q Consensus 128 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t~~i~~d~~~~~~ 207 (394)
+-... + .++.+++...+..+-.++..-+.|-+|...-...-+ ++.+..
T Consensus 925 Ai~~~---~----------------------~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-------~~~r~~ 972 (1139)
T 4fhn_B 925 ADASK---E----------------------TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-------TPLKKS 972 (1139)
T ss_dssp HHHHC---C----------------------SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-------SSSCHH
T ss_pred HHHhc---c----------------------CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-------HHHHHH
Confidence 64321 1 122345544555555677777777776444433332 234567
Q ss_pred HHHHHHH
Q 016147 208 VLRKICW 214 (394)
Q Consensus 208 ~L~~av~ 214 (394)
||+..|.
T Consensus 973 cLr~LV~ 979 (1139)
T 4fhn_B 973 CLLDFVN 979 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887664
No 335
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.20 E-value=74 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=39.8
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
-....|.+.||+.+|+++..++..+.+|...|-+. -..+|.|..+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 47899999999999999999999999999999887 23567777764
No 336
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=27.15 E-value=59 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=31.2
Q ss_pred CcccHHHHHHHhCCCHH-HHHHHHHHhHhcCcEEE
Q 016147 306 SRITLKRLAELLCLSIQ-EAEKHLSDMVVSKALVA 339 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~-e~E~~ls~MI~~g~l~a 339 (394)
-..|-..||+.||+|+. .+-..|..|-.+|-+..
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 45889999999999999 99999999999999963
No 337
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.14 E-value=53 Score=26.35 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=26.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
..+|...||+.+|+++.-+=..+.+|+..|-|.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 67999999999999999999999999999988766544443
No 338
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=26.62 E-value=62 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=30.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
.+|-+.||..+|+|.+-+-+.+++|..+|-|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999875
No 339
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.49 E-value=92 Score=21.30 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=25.3
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
.|+...|...+|+.+|+|+.-+...+.+..
T Consensus 27 ~~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 27 TQLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467889999999999999998887776653
No 340
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=26.27 E-value=60 Score=32.07 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016147 159 PSLLELKRIYYELMIRYYSHNNDYLEICRCYK 190 (394)
Q Consensus 159 ~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ 190 (394)
.+..|+.++|..-+...|...++|.||+.|+.
T Consensus 4 ~~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~ 35 (428)
T 2wm9_A 4 ASTPELRKTWLDSMARIHVKNGDLSEAAMCYV 35 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45689999999999999999999999999986
No 341
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.14 E-value=65 Score=28.21 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
-.+|-..||..+|+|.+-+-+.+++|..+|-|.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 468899999999999999999999999999885
No 342
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=26.01 E-value=66 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=30.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 337 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l 337 (394)
--.+|-..||..+|+|++-+-+.+.+|..+|-|
T Consensus 165 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 197 (220)
T 2fmy_A 165 ELGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL 197 (220)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE
Confidence 346899999999999999999999999999976
No 343
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=25.68 E-value=2e+02 Score=21.02 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhH
Q 016147 103 AFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDY 182 (394)
Q Consensus 103 e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~f 182 (394)
..+.....++...+++..|..+.+++-... | .. ...+...+..+...++|
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p----------------------~~----~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD----P----------------------TY----SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T----------------------TC----HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC----C----------------------Cc----HHHHHHHHHHHHHcCCH
Confidence 567788999999999999999999987541 1 11 12244556777788899
Q ss_pred HHHHHHHHHHhc
Q 016147 183 LEICRCYKAIYE 194 (394)
Q Consensus 183 lea~k~y~ei~~ 194 (394)
-+|...|.....
T Consensus 70 ~~A~~~~~~al~ 81 (115)
T 2kat_A 70 AGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887765
No 344
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=25.55 E-value=1.9e+02 Score=24.24 Aligned_cols=92 Identities=15% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccC----ChHHHHHHHHhhCccccCCCC
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQ----DYVRAQILSRKISPRVFDADP 137 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~----D~~~a~~~~~Ki~~~~~~~~~ 137 (394)
+.....|+.+|...||+++|.+ .|..--..--.+-+.....++.. + |+.+|..+..|+...
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~--------~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------ 82 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEY--------WAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------ 82 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhcCCCHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------
Q ss_pred ccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhc
Q 016147 138 SKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSH----NNDYLEICRCYKAIYE 194 (394)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~----~~~flea~k~y~ei~~ 194 (394)
+..+. +...+.+|.. .+++-+|...|.....
T Consensus 83 ----------------------g~~~a----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 83 ----------------------GSKSG----EIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp ----------------------TCHHH----HHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred ----------------------CCHHH----HHHHHHHHHcCCCCccCHHHHHHHHHHHHH
No 345
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=25.54 E-value=58 Score=24.58 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHH----HHHHHHHHHHHHH
Q 016147 310 LKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM----NLEKLLDLVEKSC 378 (394)
Q Consensus 310 l~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~----~I~~l~~~V~k~~ 378 (394)
-..||+.||++..+++.+-.. +.++...|+.|.. .+..|+..+.++.
T Consensus 24 W~~LA~~Lg~~~~~I~~~~~~----------------------~~pt~~lL~~W~~r~~atv~~L~~aL~~ig 74 (85)
T 1ngr_A 24 WRHLAGELGYQPEHIDSFTHE----------------------ACPVRALLASWGAQDSATLDALLAALRRIQ 74 (85)
T ss_dssp HHHHHHHTTCCHHHHHHHHHS----------------------SCHHHHHHHHGGGSTTCBHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHcC----------------------CCHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 356899999999888876431 2345688999976 3666766666554
No 346
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.48 E-value=1.4e+02 Score=23.98 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.7
Q ss_pred hhcCcc-cHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEE
Q 016147 303 KYYSRI-TLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVC 349 (394)
Q Consensus 303 k~Y~~I-sl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~ 349 (394)
++=.++ |...||+.||+|..-+-+.+..|..+|-|..+ +..|...
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~--~g~G~~V 68 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK--RGIGMFV 68 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE--TTTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--cCCEEEE
Confidence 345778 89999999999999999999999999988653 4446533
No 347
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=25.14 E-value=4.7e+02 Score=25.21 Aligned_cols=68 Identities=6% Similarity=-0.011 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
..+...+++++...|+.++|..++...-- ....++.....++..-+++....||...+..+.+|+...
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~--~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHH--SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567788888888999999988876431 123455566778877788888889999999888888754
No 348
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.03 E-value=2.1e+02 Score=22.59 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=26.3
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
.|+...|...+|+.||+|+.-+...+.+..
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 589999999999999999999888776653
No 349
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=24.77 E-value=2.3e+02 Score=21.60 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=31.7
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
...++..+|+.+|+|..-+-..|..|...|-+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999988543
No 350
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.71 E-value=98 Score=22.78 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=24.8
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHh
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVV 333 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~ 333 (394)
...|...+|+.+|+|+.-+...+.+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999988877653
No 351
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=24.38 E-value=2.4e+02 Score=25.99 Aligned_cols=68 Identities=10% Similarity=-0.061 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 61 RARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 61 ra~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
.+.....|+..++..|++++|...++...- +..++..-.+..+.+..+....|+...|....+++-..
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356788999999999999999999987541 33223346788899999999999999999999988653
No 352
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=24.24 E-value=2.6e+02 Score=24.84 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.0
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCF 350 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F 350 (394)
..+|...+++.+|+|+.-+...|-.|+.+|.+.-= |++.|+-.|
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~~y~ 210 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGLRFY 210 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCEEEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCceEEe
Confidence 46999999999999999999999999999976543 477885444
No 353
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=23.86 E-value=57 Score=24.62 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHhCCCHH---HHHHHHHHhHhcCcEEEEec
Q 016147 311 KRLAELLCLSIQ---EAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 311 ~rLa~lL~ls~~---e~E~~ls~MI~~g~l~akID 342 (394)
+||+.+==+-|+ .+|.+|..|...|+|.++||
T Consensus 23 eRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 23 SRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 445544444444 77899999999999999886
No 354
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.80 E-value=66 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
.+|-..||..+|+|.+-+-+.+++|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 48999999999999999999999999999764
No 355
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.49 E-value=1.4e+02 Score=20.53 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.7
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
++...|...+|+.+|+|+.-+...+.+..
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677999999999999999888887754
No 356
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.37 E-value=1.1e+02 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.9
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhH
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMV 332 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI 332 (394)
.||.-.|...+|+.||+|+.-+...+.+..
T Consensus 49 ~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 49 SYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 478999999999999999998887776643
No 357
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=23.04 E-value=69 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=30.5
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
-.+|-..||..+|+|.+-+-+.+++|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999874
No 358
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.91 E-value=2.8e+02 Score=21.79 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=37.2
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEec
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQV 352 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~ 352 (394)
...++...||+.+|+|..-+=..+..|...|-|.-. +.+.+....
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~ 64 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTS 64 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEch
Confidence 356999999999999999999999999999988654 345565553
No 359
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.90 E-value=88 Score=20.91 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.4
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHh
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVV 333 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~ 333 (394)
++.-.|.+.+|+.||+|+.-+...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 577789999999999999999988877653
No 360
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.81 E-value=4.9e+02 Score=25.62 Aligned_cols=96 Identities=7% Similarity=0.054 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCC
Q 016147 66 KKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPK 145 (394)
Q Consensus 66 ~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~ 145 (394)
-.|-..|...|++++|.+++.++.-. |-.++ +..|--.+.-|...|++..|..+.......-+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~----------- 172 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAF--GIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV----------- 172 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------
Confidence 45667889999999999999998743 21111 334566788889999999999999887643221
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 146 EGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
++ ..-|..++..+...+++-+|...|.++-+.
T Consensus 173 -------------Pd-----~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 173 -------------PE-----EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -------------CC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CC-----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 11 123778888888899999999988887753
No 361
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=22.60 E-value=58 Score=21.11 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHh
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDM 331 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~M 331 (394)
.+++..+|..||+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999888777665
No 362
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=22.45 E-value=3.3e+02 Score=27.01 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhcc
Q 016147 171 LMIRYYSHNNDYLEICRCYKAIYEI 195 (394)
Q Consensus 171 ~~~~~~~~~~~flea~k~y~ei~~t 195 (394)
-++.+|...|.|.|+.+.+......
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 4778888899999999999888853
No 363
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=22.34 E-value=85 Score=27.46 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=36.1
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCC-------ChHHHHHHHHHHHHHHHHHHH
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAK-------DSNDILNSWAMNLEKLLDLVE 375 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k-------~~~~~L~~W~~~I~~l~~~V~ 375 (394)
--.+|-..||..+|+|++-+-+.+++|..+|-|.- ..|-|...++. ....-+..|+..+++|=+.++
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 34689999999999999999999999999998743 22333333221 011235667777766655443
No 364
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=22.30 E-value=75 Score=30.38 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=32.6
Q ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEE
Q 016147 305 YSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVA 339 (394)
Q Consensus 305 Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~a 339 (394)
...+|-.+||+.+|+|..-+-+.+.+|+.+|-|.-
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 78899999999999999999999999999998843
No 365
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=22.27 E-value=1.7e+02 Score=21.75 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=31.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 308 ITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 308 Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
+|...||.-||++-.++-+.|-.|-..|.+..-
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 899999999999999999999999999988764
No 366
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.26 E-value=2.2e+02 Score=25.68 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=42.0
Q ss_pred HHHHhhcCcccHHHHHHHh-----CCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHH
Q 016147 299 LVVSKYYSRITLKRLAELL-----CLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWA 364 (394)
Q Consensus 299 ~visk~Y~~Isl~rLa~lL-----~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~ 364 (394)
+.++. ...+.+.++..+ +++...+...+..++..|-|... .|...|.++ .+..|-
T Consensus 289 ~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~----~~~y~~~~p-----~~~~~~ 348 (350)
T 2qen_A 289 RAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE----DNTYKIADP-----VVATVL 348 (350)
T ss_dssp HHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESSH-----HHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec----CCEEEEecH-----HHHHHH
Confidence 44444 457889999888 99999999999999999987643 477788754 566663
No 367
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=22.06 E-value=2.5e+02 Score=20.87 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=35.1
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
...++..||+.+|+|..-+-..|..|...|-+..+-+...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~ 74 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQ 74 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 4589999999999999999999999999999987665443
No 368
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=22.00 E-value=3e+02 Score=21.89 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=37.1
Q ss_pred cCcccHHHHHHHh-CCCHHHHHHHHHHhHhcCcEEEEeccCCC
Q 016147 305 YSRITLKRLAELL-CLSIQEAEKHLSDMVVSKALVAKIDRPQG 346 (394)
Q Consensus 305 Y~~Isl~rLa~lL-~ls~~e~E~~ls~MI~~g~l~akIDq~~g 346 (394)
....++..|++.+ |+|..-+=..|..|...|-|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4679999999999 79999999999999999999888875444
No 369
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=21.90 E-value=6.2e+02 Score=29.45 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=82.7
Q ss_pred HHHhhhchhHHHHHHHHHHHHH-------hccCCCChH---HHHHHHHHhhhhc----CCcchHHHHHHHHHHHHHHHHH
Q 016147 8 FIIRSVYLFLQAVTAMVQQAMQ-------YIDQTPDLD---TRIELIKTLNSVS----AGKIYVEIERARLIKKLAKIKE 73 (394)
Q Consensus 8 ~l~k~r~q~k~ai~~~v~~~~~-------~~~~~~d~~---~k~~~i~~L~~vt----~gki~~E~era~l~~~La~i~e 73 (394)
-.-.++|+..+||.-+ +.+.. +-.+++... .-.++.+.++-.. =-|+-=.-|.+.+...+.-+|-
T Consensus 1288 ~yYe~~G~feEAI~Ll-E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITML-EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHHcCCHHHHHHHH-HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 3457889999999887 55522 111111111 1123333333211 1122234588999999999999
Q ss_pred HhcCHHHHHHHHHHhhhhhcc------cCcHHHHHHHHHHHHHHHhccC---------------ChHHHHHHHHhhCc
Q 016147 74 EQGLIAEAADLMQEVAVETFG------AMAKTEKIAFILEQVRLCLDRQ---------------DYVRAQILSRKISP 130 (394)
Q Consensus 74 ~~gd~~eAa~iL~~i~vEt~~------~m~~~eK~e~~Leq~rL~L~~~---------------D~~~a~~~~~Ki~~ 130 (394)
..|+|+.|+.++.+=+-+++. .+++..-.|.+-+-+..|+..+ |+.|+-....|.+.
T Consensus 1367 ~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~ 1444 (1630)
T 1xi4_A 1367 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 1444 (1630)
T ss_pred hcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCC
Confidence 999999999988887666653 3466677888889999999998 99999998887765
No 370
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.86 E-value=1.3e+02 Score=25.97 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=38.6
Q ss_pred cccHHHHHHHhCCCH-HHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHH
Q 016147 307 RITLKRLAELLCLSI-QEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM 365 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~-~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~ 365 (394)
.+|-..||..+|+|. +-+-+.+++|..+|-|.-. .|-|...++ +.|..+..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~----~~~i~I~d~----~~L~~~~~ 220 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK----NSCFYVQNL----DYLKRYAP 220 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESCH----HHHHHHCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec----CCEEEEeCH----HHHHHHhc
Confidence 688999999999999 8999999999999977432 344555443 45555543
No 371
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.62 E-value=1.7e+02 Score=22.01 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHHHHhhc--CcccHHHHHHHhCCCHHHHHHHHHH
Q 016147 298 ILVVSKYY--SRITLKRLAELLCLSIQEAEKHLSD 330 (394)
Q Consensus 298 I~visk~Y--~~Isl~rLa~lL~ls~~e~E~~ls~ 330 (394)
+..|...| ..++++.||+.+|+|+........+
T Consensus 9 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 9 CQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444445 5899999999999999877766544
No 372
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.51 E-value=2.1e+02 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=30.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
..|...||+.||++..-+-..|..|...|.|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999998999999999999998644
No 373
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=21.39 E-value=87 Score=27.77 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEE
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALV 338 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ 338 (394)
.+|-..||..+|+|.+-+-+.+++|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999999775
No 374
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.33 E-value=88 Score=21.96 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=32.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCCCEEEEecCCChHHHHHHHHH
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAM 365 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~giV~F~~~k~~~~~L~~W~~ 365 (394)
.++...+|++||+|+.-+ -+++..|.-..++....|-+.|.. +.+..|..
T Consensus 2 ~lt~~e~a~~LgvS~~Tl----~rw~~~G~P~~~~~g~~~~~~y~~-----~dv~~wl~ 51 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTI----QNWQEQGMPVLRGGGKGNEVLYDS-----AAVIKWYA 51 (68)
T ss_dssp EEEHHHHHHHTTCCHHHH----HHHTTTTCCCSSCCCSSSCCEEEH-----HHHHHHHT
T ss_pred ccCHHHHHHHHCcCHHHH----HHHHHCCCCeEeeCCCcceEEECH-----HHHHHHHH
Confidence 368899999999998755 456777862122221124888875 45777854
No 375
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=21.23 E-value=1.4e+02 Score=27.76 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=37.9
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEeccCC
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQ 345 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akIDq~~ 345 (394)
.|-..++.+.||+.||+|..-+-+.|..+-.+|.+.-+|.-+.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDY 59 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCCc
Confidence 4568899999999999999999999999999999987775543
No 376
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.18 E-value=1.8e+02 Score=24.57 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHH
Q 016147 60 ERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVR 120 (394)
Q Consensus 60 era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~ 120 (394)
|..+-...+-+=|...||.+||+..++++.. +...-.|+-..+.+.++++|-.|
T Consensus 8 e~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~-------p~~~~~~V~~~I~~aldrk~~er 61 (165)
T 2rg8_A 8 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNL-------GEMKSGVPVLAVSLALEGKASHR 61 (165)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-------SGGGGHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCC-------cccHHHHHHHHHHHHHcCCHHHH
Confidence 3333344444445567999999999999773 22555777777889999987554
No 377
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.10 E-value=2.4e+02 Score=20.83 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVA 89 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~ 89 (394)
.+....||..+...|++.+|...++.+.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667888999999999999999998865
No 378
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=20.77 E-value=4.5e+02 Score=24.95 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccc
Q 016147 57 VEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV 132 (394)
Q Consensus 57 ~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~ 132 (394)
++..+..+...+++.+.+.|+..+|...+..+-.. -+-+|. ++-.-|+.+...|+...|...+.++....
T Consensus 166 l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 166 LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----HPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44555556677888899999999999888876321 122343 67777999999999999999998887653
No 379
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.71 E-value=1.9e+02 Score=21.60 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=20.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHh
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDM 331 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~M 331 (394)
.++++.||+.+|+|+........+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999998877665543
No 380
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.68 E-value=1.4e+02 Score=24.28 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHh-hcCcccHHHHHHHhCCCHH
Q 016147 287 EDLRQRIIEHNILVVSK-YYSRITLKRLAELLCLSIQ 322 (394)
Q Consensus 287 ~~L~~~viEHNI~visk-~Y~~Isl~rLa~lL~ls~~ 322 (394)
..-+.+|++-=+..+.+ -|..+|+..+|+..|+|..
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~ 42 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKG 42 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCcc
Confidence 45567778888877774 4999999999999999954
No 381
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.63 E-value=2.2e+02 Score=19.82 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.2
Q ss_pred hcCcccHHHHHHHhCCCHHHHHHHHHHhHh
Q 016147 304 YYSRITLKRLAELLCLSIQEAEKHLSDMVV 333 (394)
Q Consensus 304 ~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~ 333 (394)
++...|.+.+|+.+|+|+.-+...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 588899999999999999999988877654
No 382
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.43 E-value=4.1e+02 Score=22.78 Aligned_cols=89 Identities=9% Similarity=-0.093 Sum_probs=57.8
Q ss_pred HHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCccccCCCCccccCCCCCCCcccc
Q 016147 73 EEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVE 152 (394)
Q Consensus 73 e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~~~~~~~~~~~~~~~~~~~~~~ 152 (394)
-+.|+++.|.++..++.-+ ..+=+..+.+|..+|+.-|+....|++...- +-.
T Consensus 16 L~lg~l~~A~e~a~~l~~~-----------~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~----------------L~~ 68 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLNDS-----------ITWERLIQEALAQGNASLAEMIYQTQHSFDK----------------LSF 68 (177)
T ss_dssp HHTTCHHHHHHHHHHHCCH-----------HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH----------------HHH
T ss_pred HhcCCHHHHHHHHHHhCCH-----------HHHHHHHHHHHHcCChHHHHHHHHHhCCHHH----------------HHH
Confidence 3678999999888765322 3566678888999999999998888875100 000
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 016147 153 EAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 194 (394)
Q Consensus 153 ~~~~~~~~~~d~klk~~~~~~~~~~~~~~flea~k~y~ei~~ 194 (394)
.|..++ +. ..+.-+.......++|.-++.+|...++
T Consensus 69 Ly~~tg-~~-----e~L~kla~iA~~~g~~n~af~~~l~lGd 104 (177)
T 3mkq_B 69 LYLVTG-DV-----NKLSKMQNIAQTREDFGSMLLNTFYNNS 104 (177)
T ss_dssp HHHHHT-CH-----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHhC-CH-----HHHHHHHHHHHHCccHHHHHHHHHHcCC
Confidence 000000 00 1134666777888888888888887775
No 383
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=20.35 E-value=1.2e+02 Score=23.62 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=32.5
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 307 RITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 307 ~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
..+...||+.+|+|..-+-..+..|...|-+..+-|
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 468899999999999999999999999999977654
No 384
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=20.32 E-value=87 Score=30.10 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHH-hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEE
Q 016147 287 EDLRQRIIEHNILVVS-KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAK 340 (394)
Q Consensus 287 ~~L~~~viEHNI~vis-k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~ak 340 (394)
+.++..+.++...-.. +||-..|...+|+++|+|...++..+.+|-..|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3ez9_A 22 KAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNK 76 (403)
T ss_dssp GGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCc
Confidence 4466777777776655 89999999999999999999999999888777766555
No 385
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=20.28 E-value=4e+02 Score=22.68 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=60.7
Q ss_pred HHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHH--------------------H
Q 016147 41 IELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKT--------------------E 100 (394)
Q Consensus 41 ~~~i~~L~~vt~gki~~E~era~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~--------------------e 100 (394)
-.++-++....+.....+ +++++-..+|+.+..+|++..|...+...--- ...+++. .
T Consensus 43 a~lLlSl~~~~~~~~sp~-~~~~~l~~ladalf~~~eyrrA~~~y~qALq~-~k~l~k~~s~~~~~~~~ss~p~s~~~~~ 120 (167)
T 3ffl_A 43 SSLLLTLSNNNPELFSPP-QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ-KKALSKTSKVRPSTGNSASTPQSQCLPS 120 (167)
T ss_dssp HHHHHHHHHHSTTSSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHCC--------------------CCCC
T ss_pred HHHHHHhhcCCcccccHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHHHhcCCCccccccccCCCcccccccc
Confidence 334445544444444444 56778899999999999999999998873110 1112111 1
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHhhCcc
Q 016147 101 KIAFILEQVRLCLDRQDYVRAQILSRKISPR 131 (394)
Q Consensus 101 K~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~~ 131 (394)
-+|+-..+++.+++-+++..|-.+...|-.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 2477788999999999999999998877543
No 386
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.16 E-value=1e+02 Score=31.40 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHH
Q 016147 64 LIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAF 104 (394)
Q Consensus 64 l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~ 104 (394)
+..-|.++|+..|++-+||++|..+-.. ...++-.++++|
T Consensus 219 ~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~~i~L~~RIey 258 (525)
T 3i5p_A 219 ISNILWVYYSRRSKFFESAEILYRLATS-NFDITLFERIEF 258 (525)
T ss_dssp HHHHHHTHHHHCCSHHHHHHHHHHHHSS-SSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhC-CCCCCHHHHHHH
Confidence 4567999999999999999999999875 347889999998
No 387
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=20.08 E-value=5.4e+02 Score=24.76 Aligned_cols=64 Identities=6% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHhccCChHHHHHHHHhhCc
Q 016147 62 ARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP 130 (394)
Q Consensus 62 a~l~~~La~i~e~~gd~~eAa~iL~~i~vEt~~~m~~~eK~e~~Leq~rL~L~~~D~~~a~~~~~Ki~~ 130 (394)
..+...++.+++..|++++|..++...-- . ++..-...++.-+++....+++..|..+..|+-.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-c----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45677889999999999999998887431 1 1111124777788888889999999999999864
No 388
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=20.07 E-value=1.8e+02 Score=25.41 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=34.6
Q ss_pred CcccHHHHHHHhCCCHHHHHHHHHHhHhcCcEEEEec
Q 016147 306 SRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKID 342 (394)
Q Consensus 306 ~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~l~akID 342 (394)
...+...||+.+|+|..-+=..|..|...|-|...-+
T Consensus 27 ~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 27 RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 5689999999999999999999999999999988777
No 389
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=20.05 E-value=1.4e+02 Score=23.89 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred hhcCcccHHHHHHHhCCCHHHHHHHHHHhHhcCc
Q 016147 303 KYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKA 336 (394)
Q Consensus 303 k~Y~~Isl~rLa~lL~ls~~e~E~~ls~MI~~g~ 336 (394)
-|=...+++.+|+.-|++...++..++.+|.+|.
T Consensus 28 l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 28 QIDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3557889999999999999999999999999995
Done!