Query 016148
Match_columns 394
No_of_seqs 415 out of 1219
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 08:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 1.1E-35 3.9E-40 249.3 28.3 221 30-354 1-227 (227)
2 4f3l_A Mclock, circadian locom 99.9 1.2E-25 4.2E-30 200.0 20.3 238 17-362 85-360 (361)
3 4f3l_B BMAL1B; BHLH, PAS, circ 99.9 3.4E-24 1.2E-28 192.1 19.0 107 251-360 278-386 (387)
4 2pr5_A Blue-light photorecepto 99.9 6.9E-22 2.4E-26 150.4 16.7 129 245-375 3-131 (132)
5 3mr0_A Sensory box histidine k 99.9 1.3E-21 4.3E-26 151.0 15.6 134 239-375 7-142 (142)
6 3rty_A Period circadian protei 99.9 9.1E-21 3.1E-25 165.1 22.4 216 30-358 5-264 (339)
7 2gj3_A Nitrogen fixation regul 99.9 2E-21 6.8E-26 145.2 14.9 117 17-137 4-120 (120)
8 2gj3_A Nitrogen fixation regul 99.9 1.4E-20 4.9E-25 140.5 16.4 116 241-359 5-120 (120)
9 3f1p_B ARYL hydrocarbon recept 99.8 8.2E-21 2.8E-25 142.1 11.7 116 19-138 3-120 (121)
10 4hia_A LOV protein; PAS, HTH, 99.8 7.6E-20 2.6E-24 146.4 16.5 125 241-365 7-131 (176)
11 1n9l_A PHOT-LOV1, putative blu 99.8 8E-20 2.8E-24 133.9 15.3 108 250-357 2-109 (109)
12 1n9l_A PHOT-LOV1, putative blu 99.8 5.8E-20 2E-24 134.6 14.5 109 26-135 1-109 (109)
13 3p7n_A Sensor histidine kinase 99.8 9.8E-20 3.3E-24 155.3 17.9 136 242-377 64-201 (258)
14 4hia_A LOV protein; PAS, HTH, 99.8 4.5E-20 1.5E-24 147.7 14.8 124 15-139 4-127 (176)
15 3f1p_B ARYL hydrocarbon recept 99.8 3.3E-20 1.1E-24 138.7 12.2 113 245-360 6-120 (121)
16 4dj3_A Period circadian protei 99.8 2.3E-18 8E-23 148.4 25.1 120 253-375 176-312 (317)
17 3t50_A Blue-light-activated hi 99.8 1.2E-19 4.2E-24 136.9 14.1 126 246-371 2-127 (128)
18 2pr5_A Blue-light photorecepto 99.8 1.6E-19 5.6E-24 137.2 14.9 115 22-139 3-117 (132)
19 3f1p_A Endothelial PAS domain- 99.8 5.6E-20 1.9E-24 136.6 10.5 108 27-138 8-116 (117)
20 3f1p_A Endothelial PAS domain- 99.8 7.3E-20 2.5E-24 135.9 11.0 109 250-361 8-117 (117)
21 3mr0_A Sensory box histidine k 99.8 2E-19 6.7E-24 138.6 13.3 121 15-139 6-128 (142)
22 3ue6_A Aureochrome1; PAS/LOV d 99.8 3.1E-19 1.1E-23 141.2 14.4 125 240-364 34-158 (166)
23 3p7n_A Sensor histidine kinase 99.8 5.7E-19 2E-23 150.5 16.2 122 16-138 61-182 (258)
24 3sw1_A Sensory box protein; li 99.8 7.8E-19 2.7E-23 138.3 14.9 133 241-376 25-160 (162)
25 3ue6_A Aureochrome1; PAS/LOV d 99.8 4.4E-19 1.5E-23 140.3 12.3 123 16-139 33-155 (166)
26 3nja_A Probable ggdef family p 99.8 6.8E-19 2.3E-23 131.8 11.4 120 15-138 4-125 (125)
27 3t50_A Blue-light-activated hi 99.8 1.1E-18 3.7E-23 131.6 12.5 116 23-139 2-117 (128)
28 4eet_B Phototropin-2; LOV, blu 99.8 2.7E-18 9.1E-23 126.5 14.1 114 23-137 2-115 (115)
29 3k3c_A Protein RV1364C/MT1410; 99.8 2.9E-18 9.9E-23 134.5 14.6 130 241-375 17-152 (158)
30 3ewk_A Sensor protein; PAS dom 99.8 4.3E-18 1.5E-22 142.1 16.4 118 254-374 2-119 (227)
31 3h9w_A Diguanylate cyclase wit 99.8 9.7E-19 3.3E-23 129.4 11.0 112 250-363 2-114 (115)
32 3gdi_A Period circadian protei 99.8 3.6E-17 1.2E-21 140.6 21.9 102 253-357 167-271 (309)
33 3mqq_A Transcriptional regulat 99.8 6.3E-19 2.1E-23 131.5 9.7 115 19-139 4-119 (120)
34 4eet_B Phototropin-2; LOV, blu 99.8 7.6E-18 2.6E-22 124.0 15.1 114 246-359 2-115 (115)
35 3nja_A Probable ggdef family p 99.8 3.5E-18 1.2E-22 127.9 12.9 118 240-360 6-125 (125)
36 4dj2_A Period circadian protei 99.8 2E-17 6.9E-22 142.7 18.9 103 253-358 178-283 (320)
37 2vv6_A FIXL, sensor protein FI 99.8 4.2E-18 1.4E-22 126.8 12.6 113 250-367 2-118 (119)
38 2wkq_A NPH1-1, RAS-related C3 99.8 1.5E-17 5E-22 147.3 18.1 129 246-374 16-144 (332)
39 3mqq_A Transcriptional regulat 99.8 1.6E-18 5.4E-23 129.3 9.8 114 243-361 5-119 (120)
40 3lyx_A Sensory BOX/ggdef domai 99.8 1E-17 3.5E-22 124.6 14.2 119 16-138 5-123 (124)
41 3h9w_A Diguanylate cyclase wit 99.8 2.4E-18 8.2E-23 127.3 9.9 110 27-139 2-112 (115)
42 1d06_A Nitrogen fixation regul 99.8 1.1E-17 3.6E-22 126.7 12.8 122 6-134 5-130 (130)
43 2r78_A Sensor protein; sensory 99.8 2.5E-17 8.7E-22 122.1 14.4 110 15-134 8-117 (117)
44 3kx0_X Uncharacterized protein 99.8 9.5E-18 3.2E-22 135.3 12.7 132 241-377 37-178 (185)
45 2v0u_A NPH1-1, LOV2; kinase, t 99.8 8.9E-17 3.1E-21 123.3 17.7 130 245-375 6-135 (146)
46 3mxq_A Sensor protein; PSI2, M 99.7 7.9E-18 2.7E-22 129.7 10.9 121 14-139 18-150 (152)
47 2z6d_A Phototropin-2; PAS-fold 99.7 4.9E-17 1.7E-21 121.9 15.1 121 241-364 6-129 (130)
48 2z6d_A Phototropin-2; PAS-fold 99.7 4.5E-17 1.5E-21 122.1 14.5 121 15-139 3-126 (130)
49 3lyx_A Sensory BOX/ggdef domai 99.7 7.2E-17 2.5E-21 120.0 15.5 117 241-360 7-123 (124)
50 3icy_A Sensor protein; sensory 99.7 1.1E-17 3.7E-22 124.0 10.6 115 16-134 2-118 (118)
51 3luq_A Sensor protein; PAS, hi 99.7 2.3E-17 7.9E-22 121.3 12.3 111 18-134 3-114 (114)
52 3k3c_A Protein RV1364C/MT1410; 99.7 2.9E-17 1E-21 128.7 12.4 119 15-139 14-138 (158)
53 2r78_A Sensor protein; sensory 99.7 1E-16 3.5E-21 118.8 14.6 113 235-356 5-117 (117)
54 3sw1_A Sensory box protein; li 99.7 5.3E-17 1.8E-21 127.7 13.8 120 16-139 23-145 (162)
55 2vv6_A FIXL, sensor protein FI 99.7 6.7E-17 2.3E-21 120.2 12.0 108 26-139 1-112 (119)
56 2kdk_A ARYL hydrocarbon recept 99.7 9.3E-17 3.2E-21 119.7 12.3 112 22-137 7-120 (121)
57 3mxq_A Sensor protein; PSI2, M 99.7 4.3E-17 1.5E-21 125.6 10.5 117 242-362 23-151 (152)
58 3luq_A Sensor protein; PAS, hi 99.7 3.6E-16 1.2E-20 114.8 15.1 112 241-356 3-114 (114)
59 3kx0_X Uncharacterized protein 99.7 8.7E-17 3E-21 129.6 12.5 119 15-139 34-158 (185)
60 2wkq_A NPH1-1, RAS-related C3 99.7 1.4E-16 4.7E-21 141.1 14.0 118 21-139 14-131 (332)
61 3icy_A Sensor protein; sensory 99.7 9.1E-17 3.1E-21 118.9 10.8 114 240-356 3-118 (118)
62 2kdk_A ARYL hydrocarbon recept 99.7 2.3E-16 7.8E-21 117.5 12.9 111 246-359 8-120 (121)
63 1d06_A Nitrogen fixation regul 99.7 1.1E-16 3.6E-21 121.1 10.8 110 242-356 17-130 (130)
64 2v0u_A NPH1-1, LOV2; kinase, t 99.7 3.3E-16 1.1E-20 120.0 13.7 116 20-139 4-122 (146)
65 3mjq_A Uncharacterized protein 99.7 2.1E-16 7.3E-21 118.3 10.4 120 245-370 3-122 (126)
66 3olo_A Two-component sensor hi 99.7 9.7E-16 3.3E-20 113.3 12.8 109 15-134 10-118 (118)
67 3eeh_A Putative light and redo 99.7 8.8E-16 3E-20 114.3 11.4 116 237-356 7-125 (125)
68 1byw_A Protein (human ERG pota 99.7 3.6E-15 1.2E-19 108.1 14.2 107 29-136 2-110 (110)
69 1byw_A Protein (human ERG pota 99.6 5.2E-15 1.8E-19 107.2 14.8 107 252-358 2-110 (110)
70 3bwl_A Sensor protein; structu 99.6 3.5E-15 1.2E-19 111.9 14.1 111 15-134 14-126 (126)
71 2l0w_A Potassium voltage-gated 99.6 4.2E-15 1.5E-19 112.6 14.5 115 18-136 19-138 (138)
72 4eho_A Bacteriophytochrome, PA 99.6 1.5E-16 5.2E-21 151.5 7.8 116 19-139 519-634 (635)
73 3eeh_A Putative light and redo 99.6 9.4E-16 3.2E-20 114.2 10.1 116 15-134 8-125 (125)
74 3mjq_A Uncharacterized protein 99.6 1E-15 3.5E-20 114.6 9.6 112 21-139 2-113 (126)
75 2l0w_A Potassium voltage-gated 99.6 1.9E-14 6.5E-19 109.0 15.9 118 241-358 19-138 (138)
76 3olo_A Two-component sensor hi 99.6 7.9E-15 2.7E-19 108.3 13.1 106 241-356 13-118 (118)
77 1v9y_A Heme PAS sensor protein 99.6 4.8E-15 1.6E-19 116.8 11.3 121 242-367 41-165 (167)
78 3d72_A Vivid PAS protein VVD; 99.6 1E-14 3.5E-19 112.8 12.9 107 21-132 29-149 (149)
79 3mfx_A Sensory BOX/ggdef famil 99.6 5.2E-15 1.8E-19 111.1 10.7 112 17-135 6-124 (129)
80 4eho_A Bacteriophytochrome, PA 99.6 5.8E-16 2E-20 147.5 6.1 116 243-362 520-635 (635)
81 3vol_A Aerotaxis transducer AE 99.6 3.7E-14 1.3E-18 118.2 15.6 120 241-373 22-153 (233)
82 3bwl_A Sensor protein; structu 99.6 1.7E-14 6E-19 108.0 12.0 112 237-356 13-126 (126)
83 3d72_A Vivid PAS protein VVD; 99.6 3.8E-14 1.3E-18 109.5 14.0 107 247-354 32-149 (149)
84 3mfx_A Sensory BOX/ggdef famil 99.6 1.5E-14 5.1E-19 108.6 11.2 111 241-357 7-124 (129)
85 3fc7_A HTR-like protein, senso 99.6 2.3E-15 7.8E-20 112.6 6.5 108 16-134 17-125 (125)
86 2vlg_A Sporulation kinase A; h 99.6 9.7E-15 3.3E-19 106.3 8.8 93 22-121 3-95 (111)
87 1v9y_A Heme PAS sensor protein 99.6 2.4E-14 8.3E-19 112.7 11.3 118 16-139 38-159 (167)
88 3fg8_A Uncharacterized protein 99.6 4.3E-15 1.5E-19 110.1 6.2 109 16-136 10-118 (118)
89 4f3l_B BMAL1B; BHLH, PAS, circ 99.6 9.5E-15 3.2E-19 130.9 9.5 108 28-138 278-386 (387)
90 4f3l_A Mclock, circadian locom 99.5 9.4E-15 3.2E-19 129.9 8.6 108 28-139 251-359 (361)
91 3vol_A Aerotaxis transducer AE 99.5 6.6E-14 2.3E-18 116.7 12.6 110 16-139 20-141 (233)
92 2vlg_A Sporulation kinase A; h 99.5 3.1E-14 1.1E-18 103.7 8.4 93 245-343 3-95 (111)
93 4hi4_A Aerotaxis transducer AE 99.5 1.5E-13 5.2E-18 102.2 12.4 105 17-136 4-121 (121)
94 2qkp_A Uncharacterized protein 99.5 2.9E-13 9.8E-18 104.3 12.9 115 18-139 19-136 (151)
95 2qkp_A Uncharacterized protein 99.5 1.5E-13 5E-18 105.9 11.1 120 241-366 19-141 (151)
96 4hi4_A Aerotaxis transducer AE 99.5 7.3E-13 2.5E-17 98.4 14.3 105 241-358 5-121 (121)
97 3fg8_A Uncharacterized protein 99.5 1E-13 3.5E-18 102.6 8.9 103 245-358 16-118 (118)
98 3fc7_A HTR-like protein, senso 99.5 1E-13 3.5E-18 103.5 7.1 107 240-356 18-125 (125)
99 3b33_A Sensor protein; structu 99.4 6.5E-13 2.2E-17 97.6 10.7 106 20-134 9-115 (115)
100 3b33_A Sensor protein; structu 99.4 9.8E-13 3.4E-17 96.6 10.6 105 244-356 10-115 (115)
101 3rty_A Period circadian protei 99.4 1.2E-11 4.2E-16 107.7 16.6 109 27-138 153-266 (339)
102 2ykf_A Pdtas, probable sensor 99.1 5.7E-14 1.9E-18 121.3 0.0 118 246-373 175-301 (305)
103 1ll8_A PAS kinase; PAS domain, 99.4 7.7E-13 2.6E-17 97.1 6.0 102 249-356 6-113 (114)
104 1ll8_A PAS kinase; PAS domain, 99.3 1.4E-12 4.8E-17 95.7 6.2 103 26-134 6-113 (114)
105 3cax_A Uncharacterized protein 99.3 1.3E-11 4.5E-16 109.7 13.2 115 16-140 237-351 (369)
106 3a0r_A Sensor protein; four he 99.3 2.6E-12 8.9E-17 114.3 7.7 116 243-368 10-126 (349)
107 2w0n_A Sensor protein DCUS; si 99.3 1.3E-12 4.6E-17 96.1 3.8 104 15-134 12-118 (118)
108 3cax_A Uncharacterized protein 99.3 2E-11 6.9E-16 108.5 11.2 117 239-364 237-353 (369)
109 2jhe_A Transcription regulator 99.3 1.2E-11 4E-16 99.8 8.3 108 15-138 77-190 (190)
110 3a0s_A Sensor protein; PAS-fol 99.2 9.7E-11 3.3E-15 82.0 11.3 95 27-132 1-96 (96)
111 1nwz_A PYP, photoactive yellow 99.2 1.5E-10 5.1E-15 84.1 12.3 100 21-127 20-121 (125)
112 1mzu_A PPR; photoactive yellow 99.2 1.1E-10 3.7E-15 84.9 11.3 99 22-127 26-126 (129)
113 3a0r_A Sensor protein; four he 99.2 5.2E-12 1.8E-16 112.3 5.1 114 15-139 5-119 (349)
114 4dj3_A Period circadian protei 99.2 1E-10 3.6E-15 100.7 12.6 107 29-138 175-284 (317)
115 3a0s_A Sensor protein; PAS-fol 99.2 2.1E-10 7.3E-15 80.2 12.1 95 250-354 1-96 (96)
116 2w0n_A Sensor protein DCUS; si 99.2 8E-12 2.7E-16 91.8 2.9 103 239-356 13-118 (118)
117 1nwz_A PYP, photoactive yellow 99.2 7.3E-10 2.5E-14 80.5 12.4 99 245-349 21-121 (125)
118 3gdi_A Period circadian protei 99.1 2.8E-10 9.6E-15 97.8 11.6 106 30-138 167-274 (309)
119 4dj2_A Period circadian protei 99.1 1.7E-10 5.7E-15 99.6 9.9 107 29-138 177-285 (320)
120 1mzu_A PPR; photoactive yellow 99.1 1E-09 3.5E-14 79.8 12.1 98 246-349 27-126 (129)
121 2jhe_A Transcription regulator 99.1 1E-10 3.5E-15 94.3 7.7 108 238-360 77-190 (190)
122 2ykf_A Pdtas, probable sensor 98.0 4.2E-09 1.4E-13 90.8 0.0 106 23-139 175-289 (305)
123 1oj5_A Steroid receptor coacti 98.4 1.3E-06 4.3E-11 63.1 7.3 104 30-137 9-116 (132)
124 1oj5_A Steroid receptor coacti 98.3 2.2E-06 7.6E-11 61.8 7.9 100 254-357 10-114 (132)
125 2ool_A Sensor protein; bacteri 95.0 0.031 1.1E-06 48.2 5.3 42 31-74 45-86 (337)
126 2ool_A Sensor protein; bacteri 94.8 0.11 3.8E-06 44.8 8.3 75 254-334 45-123 (337)
127 4dah_A Sporulation kinase D; a 90.6 2.6 9E-05 33.5 10.6 97 15-137 55-153 (217)
128 2hje_A Autoinducer 2 sensor ki 88.8 4.6 0.00016 31.8 9.8 85 24-133 58-142 (221)
129 4dah_A Sporulation kinase D; a 86.2 8.9 0.0003 30.2 10.9 96 238-358 55-152 (217)
130 1p0z_A Sensor kinase CITA; tra 85.9 7.8 0.00027 27.8 9.7 91 16-136 37-128 (131)
131 3c38_A Autoinducer 2 sensor ki 85.1 4.8 0.00016 32.8 8.3 87 24-135 77-163 (270)
132 1p0z_A Sensor kinase CITA; tra 83.9 7.7 0.00026 27.9 8.6 77 252-357 51-127 (131)
133 4e04_A Bacteriophytochrome (li 83.3 4.1 0.00014 34.8 7.7 53 30-89 31-83 (327)
134 3e4o_A C4-dicarboxylate transp 83.0 20 0.0007 30.2 13.4 96 16-136 100-196 (305)
135 4ew7_A Conjugative transfer: r 81.2 10 0.00035 25.6 12.7 42 19-63 21-62 (127)
136 3lif_A Putative diguanylate cy 77.7 24 0.00083 28.4 10.7 94 16-135 56-153 (254)
137 4ew7_A Conjugative transfer: r 72.8 19 0.00065 24.3 9.8 34 243-279 22-55 (127)
138 3s7o_A Bacteriophytochrome; bi 72.3 2.1 7.1E-05 36.8 2.7 41 30-72 54-94 (343)
139 4e04_A Bacteriophytochrome (li 69.3 23 0.0008 30.2 8.4 40 253-295 31-70 (327)
140 3by8_A Sensor protein DCUS; hi 68.9 23 0.00078 25.8 7.6 25 112-137 110-134 (142)
141 3s7o_A Bacteriophytochrome; bi 67.2 4.3 0.00015 34.9 3.5 41 253-295 54-94 (343)
142 2hje_A Autoinducer 2 sensor ki 65.8 48 0.0016 26.2 9.3 89 246-359 57-146 (221)
143 3c38_A Autoinducer 2 sensor ki 65.3 45 0.0015 27.2 8.8 92 245-361 75-167 (270)
144 3clo_A Transcriptional regulat 63.8 58 0.002 26.5 10.0 44 16-61 31-74 (258)
145 3clo_A Transcriptional regulat 62.9 41 0.0014 27.4 8.8 32 251-284 43-74 (258)
146 3pxp_A Helix-turn-helix domain 61.7 16 0.00053 30.7 5.9 37 16-55 97-133 (292)
147 3zq5_A Phytochrome-like protei 52.9 5.5 0.00019 36.6 1.8 42 30-73 31-72 (520)
148 3nhq_A Bacteriophytochrome; ph 52.8 42 0.0014 30.7 7.6 49 31-88 29-78 (505)
149 3lif_A Putative diguanylate cy 51.5 91 0.0031 24.9 10.3 50 305-356 101-152 (254)
150 3c8c_A Methyl-accepting chemot 48.6 64 0.0022 25.2 7.6 31 102-135 115-146 (240)
151 3by8_A Sensor protein DCUS; hi 48.0 27 0.00094 25.3 4.8 77 252-358 57-133 (142)
152 3zq5_A Phytochrome-like protei 47.6 8.5 0.00029 35.3 2.2 42 253-296 31-72 (520)
153 3lid_A Putative sensory BOX/gg 41.1 65 0.0022 26.8 6.7 106 15-137 64-178 (295)
154 3nhq_A Bacteriophytochrome; ph 36.5 2.5E+02 0.0085 25.6 10.2 48 254-310 29-77 (505)
155 3by9_A Sensor protein; histidi 30.5 2E+02 0.0069 22.7 11.5 27 107-135 128-154 (260)
156 3pxp_A Helix-turn-helix domain 28.0 1.2E+02 0.0043 25.2 6.1 39 237-278 95-133 (292)
157 3e4o_A C4-dicarboxylate transp 26.1 2.9E+02 0.0098 23.1 10.5 83 252-358 114-196 (305)
158 3c8c_A Methyl-accepting chemot 21.7 2E+02 0.0069 22.1 6.3 27 330-356 118-145 (240)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=100.00 E-value=1.1e-35 Score=249.26 Aligned_cols=221 Identities=20% Similarity=0.423 Sum_probs=199.0
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCeEEEE
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~ 109 (394)
.|+++|.+ |+|+++|++|++++||++++++|+++..+.++.........+...+..+..+..++..+++||+.+|+.
T Consensus 1 ~i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 77 (227)
T 3ewk_A 1 LVSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVD 77 (227)
T ss_dssp CEEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEE
T ss_pred CEEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeee
Confidence 37889998 999999999999999999999999988777777777777778888888999999999999999999999
Q ss_pred EEEEeeeccCCCeeeEEEEEecccccccccccccCcccccCCCCchhHHHhhhhhhhhhhhhhhhhhhhcccCCCCCCCc
Q 016148 110 FKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLE 189 (394)
Q Consensus 110 ~~~~~i~~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~~~ 189 (394)
.+..|+++ .+|.+.+++++.+|||++|++
T Consensus 78 ~~~~p~~d-~~g~~~~~~~~~~DIT~~k~~-------------------------------------------------- 106 (227)
T 3ewk_A 78 STIVPLMD-NAGKPRQYISIRRDITAQKEA-------------------------------------------------- 106 (227)
T ss_dssp EEEEEEEC-SSSCEEEEEEEEEECTTTTHH--------------------------------------------------
T ss_pred eEEEEEEc-CCCCEEEEEEEEEehhhHHHH--------------------------------------------------
Confidence 99999999 999999999999999999985
Q ss_pred cccchhhhHHHHHHhHhhhhhHHHhhhhccccccceeeccccCCcchhhhHHHHHHHHhcccceEEEEcCCCCCcCEEEe
Q 016148 190 IEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYA 269 (394)
Q Consensus 190 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~ 269 (394)
+..++. +..++++++++|+++|. +|+|+++
T Consensus 107 --------e~~l~~---------------------------------------~~~~~~~~~~~i~~~d~---~g~i~~~ 136 (227)
T 3ewk_A 107 --------EAQLAR---------------------------------------LKQAMDANSEMILLTDR---AGRIIYA 136 (227)
T ss_dssp --------HHHHHH---------------------------------------HHHHHHTCCSEEEEECT---TSCEEEE
T ss_pred --------HHHHHH---------------------------------------HHHHHhcCcCeEEEEcC---CCcEEEE
Confidence 222211 23346788999999998 7999999
Q ss_pred CHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCC------eeEEEEEeeeeecCCC
Q 016148 270 SDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS------SFWNLLHISPIRNASG 343 (394)
Q Consensus 270 N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~------~~~~~~~~~~i~d~~g 343 (394)
|+++++++||++++++|+++..+.++...+.....+.+.+..+.++.+++..++++|. .+|+.+++.|+.|.+|
T Consensus 137 N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g 216 (227)
T 3ewk_A 137 NPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGN 216 (227)
T ss_dssp CHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSS
T ss_pred chHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCC
Confidence 9999999999999999999988888888888888999999999999999999999997 8999999999999999
Q ss_pred CEEEEEEEEee
Q 016148 344 KIAYFAAVHTE 354 (394)
Q Consensus 344 ~~~~~~~~~~D 354 (394)
.+.+++++.+|
T Consensus 217 ~~~~~v~i~~D 227 (227)
T 3ewk_A 217 GLVGYVQIQHD 227 (227)
T ss_dssp CEEEEEEEEEC
T ss_pred CEEEEEEEecC
Confidence 99999999987
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=200.04 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=170.5
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCe----
Q 016148 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI---- 92 (394)
Q Consensus 17 ~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 92 (394)
.++...++++++..+++++.+ |+|+|+|+++.+++||++++++|+++.+++||++...+...+......+...
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~ 161 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEY 161 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGG
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCccc
Confidence 345667889999999999998 9999999999999999999999999999999998877766655433222211
Q ss_pred -------eEEEeeEec------CCCeEEEEEEEEeeecc--------------------CCCeeeEEEEEeccccccccc
Q 016148 93 -------EVNLLNYKK------DGTPFWMLFKMSLVFGK--------------------EDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 93 -------~~e~~~~~~------dG~~~~v~~~~~~i~~~--------------------~~g~~~~~~~~~~DITe~k~~ 139 (394)
.+.+++.+. .+...++.+.+...... ..+...+++++.++++.....
T Consensus 162 ~~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~ 241 (361)
T 4f3l_A 162 LKSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIK 241 (361)
T ss_dssp GCGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSE
T ss_pred ccccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCccc
Confidence 112222111 12233333322222110 011122333444444333221
Q ss_pred ccccCcccccCCCCchhHHHhhhhhhhhhhhhhhhhhhhcccCCCCCCCccccchhhhHHHHHHhHhhhhhHHHhhhhcc
Q 016148 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYS 219 (394)
Q Consensus 140 e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (394)
|. ..
T Consensus 242 e~-------------------------------------------------------------------~~--------- 245 (361)
T 4f3l_A 242 EM-------------------------------------------------------------------CT--------- 245 (361)
T ss_dssp EE-------------------------------------------------------------------CS---------
T ss_pred cc-------------------------------------------------------------------cc---------
Confidence 00 00
Q ss_pred ccccceeeccccCCcchhhhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCch
Q 016148 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~ 299 (394)
+-......++..+. ||+++|+|+++..++||+++|++|+++..+.||++.+
T Consensus 246 --------------------------i~~~~~~f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~ 296 (361)
T 4f3l_A 246 --------------------------VEEPNEEFTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLE 296 (361)
T ss_dssp --------------------------CSSSCCEEEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHH
T ss_pred --------------------------ccCCcceeEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHH
Confidence 00011245566676 8999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHhccCeeeEEEEEEecCCCeeEEEEEeeeeecC-CCCEEEEEEEEeecchhhhhh
Q 016148 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA-SGKIAYFAAVHTEEGCRNQDR 362 (394)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k~~e 362 (394)
.....+...+..|.....++++++++|.++|+..++.|+.|. +|++.+++++.+|||+++..+
T Consensus 297 ~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 297 NLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 888888888888888888999999999999999999999998 799999999999999998654
No 3
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.92 E-value=3.4e-24 Score=192.12 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=92.9
Q ss_pred cceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe-eeEEEEEEecCCCee
Q 016148 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CTVRILNYRKDKSSF 329 (394)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~G~~~ 329 (394)
.+.++..+. ||+++|+|+++..++||+++|++|+.+..++||+|.+.....+...+..+.. ...+++++++||.++
T Consensus 278 ~~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 456777777 8999999999999999999999999999999999998888888888766554 567999999999999
Q ss_pred EEEEEeeeeecC-CCCEEEEEEEEeecchhhh
Q 016148 330 WNLLHISPIRNA-SGKIAYFAAVHTEEGCRNQ 360 (394)
Q Consensus 330 ~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k~ 360 (394)
|+..++.++.+. +|++.+++++.+|||+||+
T Consensus 355 Wv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999999997 8999999999999999984
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.89 E-value=6.9e-22 Score=150.44 Aligned_cols=129 Identities=33% Similarity=0.673 Sum_probs=111.8
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
.++++++++|+++|...++|+|+|+|+++++++||++++++|+++..+.++.........+...+..+.++..+++.+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 35789999999999832234999999999999999999999999887777776666667777788888889999999999
Q ss_pred CCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHHh
Q 016148 325 DKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 375 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 375 (394)
||+.+|+.++..|+.+.+ +.+++++++|||++|++|++|++++++|+.+
T Consensus 83 dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp TSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998765 7889999999999999999999999998875
No 5
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.88 E-value=1.3e-21 Score=151.01 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=119.1
Q ss_pred hHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCC--cccccccCCCchhHHHHHHHHHhccCeee
Q 016148 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (394)
....+..+++++++++|.+|. ++.++++|+++++++||+++++.+. .+..++||++.+.+...+...+..+.++.
T Consensus 7 se~rl~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~ 83 (142)
T 3mr0_A 7 SEERFQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYD 83 (142)
T ss_dssp --CCHHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceE
Confidence 344577889999999999999 6889999999999999999988764 35677899999998888888888888999
Q ss_pred EEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHHh
Q 016148 317 VRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 375 (394)
Q Consensus 317 ~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 375 (394)
.++++++++|..+|+...+.|+.|.+|.+.+++|+++|||++|++|++|++++++++.+
T Consensus 84 ~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~l 142 (142)
T 3mr0_A 84 VEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRRL 142 (142)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998753
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.88 E-value=9.1e-21 Score=165.14 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=160.2
Q ss_pred eEEEEc-CCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCe------------eEEE
Q 016148 30 SFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI------------EVNL 96 (394)
Q Consensus 30 ~i~~~d-~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~e~ 96 (394)
.+++++ ++ |+|+|+|+++..++||++++++|+++.+++||++...+...+ ..+.++ .+-.
T Consensus 5 F~~vv~~~~---G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L----~~gl~~~~~~~~~~~~~rsffc 77 (339)
T 3rty_A 5 FCCVISMHD---GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQI----TTGIPIAESRGSVPKDAKSTFC 77 (339)
T ss_dssp EEEEEETTT---CBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHH----HTTSCCC----------CCEEE
T ss_pred EEEEEECCC---cEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHH----hcCCCCCccccCCCCCCceEEE
Confidence 456777 57 999999999999999999999999999999998776655444 333222 2223
Q ss_pred eeEe----------------cCCCeEEEEEEEEeeeccC---------CCeeeEEEEEecccccccccccccCcccccCC
Q 016148 97 LNYK----------------KDGTPFWMLFKMSLVFGKE---------DGRATHFVAVQVPIVSRKHMRNSGMSYSEDGG 151 (394)
Q Consensus 97 ~~~~----------------~dG~~~~v~~~~~~i~~~~---------~g~~~~~~~~~~DITe~k~~e~~~~~~~~~~~ 151 (394)
+..+ +++.++|+..+..++.+ + .|...++++++++++.....
T Consensus 78 R~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~-e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~------------ 144 (339)
T 3rty_A 78 VMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPE-EARPDNYMVSNGTNMLLVICATPIKSSYKV------------ 144 (339)
T ss_dssp EEEECCC-------------CCEEEEEEEEEEEECCC-C----------CCCEEEEEEEEECCCSCSS------------
T ss_pred EEEeccCCCCcCCcceecccccceeEEEEEEEecccc-ccccccccccCCceEEEEEEcccCCccccc------------
Confidence 3221 12233455555566655 4 56677788888888865442
Q ss_pred CCchhHHHhhhhhhhhhhhhhhhhhhhcccCCCCCCCccccchhhhHHHHHHhHhhhhhHHHhhhhccccccceeecccc
Q 016148 152 GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRC 231 (394)
Q Consensus 152 ~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
. ..+.
T Consensus 145 ----------------------------------------------------p----~e~~------------------- 149 (339)
T 3rty_A 145 ----------------------------------------------------P----DEIL------------------- 149 (339)
T ss_dssp ----------------------------------------------------T----TBBC-------------------
T ss_pred ----------------------------------------------------c----chhh-------------------
Confidence 0 0000
Q ss_pred CCcchhhhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhc
Q 016148 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (394)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (394)
-....+.++..+. ||+++|+|+++..++||+++|++|+++..+.||+|.+.....+...+..
T Consensus 150 ---------------~~~~~~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~ 211 (339)
T 3rty_A 150 ---------------SQKSPKFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKK 211 (339)
T ss_dssp ---------------CSSCCEEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHH
T ss_pred ---------------ccCCceEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHc
Confidence 0011346677777 8999999999999999999999999999999999998888888888876
Q ss_pred cCe-----eeEEEEEEecCCCeeEEEEEeeeeecCC-CCEEEEEEEEeecchh
Q 016148 312 EQA-----CTVRILNYRKDKSSFWNLLHISPIRNAS-GKIAYFAAVHTEEGCR 358 (394)
Q Consensus 312 ~~~-----~~~e~~~~~~~G~~~~~~~~~~~i~d~~-g~~~~~~~~~~DIT~~ 358 (394)
|.. ...++|++++||.++|++.+.+++.|.. +++.+++++.+.|+..
T Consensus 212 G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 212 GQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp TTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred CCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 664 3578999999999999999999999864 6777888888877755
No 7
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.87 E-value=2e-21 Score=145.22 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=106.4
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEE
Q 016148 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (394)
Q Consensus 17 ~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (394)
.++|+.++++++++|+++|.+ |+|+|+|++|++++||++++++|++...+.++.........+...+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999999 99999999999999999999999998878777666666667778888888888999
Q ss_pred eeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccc
Q 016148 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 97 ~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
..+++||+.+|+.++..|+++ .+|.+.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 999999999999999999999 8999999999999999986
No 8
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.86 E-value=1.4e-20 Score=140.53 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=105.4
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (394)
..+..++++++++|+++|. +|+|+|+|+++++++||++++++|+++..+.++.........+...+..+..+.++++
T Consensus 5 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLV 81 (120)
T ss_dssp HHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 4577889999999999999 7999999999999999999999999988887777666666677778888889999999
Q ss_pred EEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhh
Q 016148 321 NYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRN 359 (394)
Q Consensus 321 ~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k 359 (394)
.++++|+.+|+.++..|+.+.+|.+.+++++++|||++|
T Consensus 82 ~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 82 NRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 999999999999999999999999999999999999986
No 9
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.85 E-value=8.2e-21 Score=142.06 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=100.8
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHH-hCCCeeEEEe
Q 016148 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLL 97 (394)
Q Consensus 19 ~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 97 (394)
....+++++++.++++|.+ |+|+|+|+++++++||++++++|+++..++||++.......+...+. .+.++..+++
T Consensus 3 ~~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp -----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 3456899999999999999 99999999999999999999999999999999988887777777774 4557889999
Q ss_pred eEecCCCeEEEEEEEEeeeccC-CCeeeEEEEEecccccccc
Q 016148 98 NYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 98 ~~~~dG~~~~v~~~~~~i~~~~-~g~~~~~~~~~~DITe~k~ 138 (394)
++++||+.+|++.+..|+++ . +|.+.+++++++|||++|+
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EEecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 99999999999999999998 6 7899999999999999986
No 10
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.84 E-value=7.6e-20 Score=146.41 Aligned_cols=125 Identities=27% Similarity=0.520 Sum_probs=114.2
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (394)
..+..++++++++|+++|...++|+|+++|+++++++||++++++|+++..+.++.+.......+...+..+.++..+++
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 34677899999999999993223999999999999999999999999998888888888888888888989999999999
Q ss_pred EEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHH
Q 016148 321 NYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGL 365 (394)
Q Consensus 321 ~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L 365 (394)
..+++|..+|+.++..|+.+.+|.+.+++++++|||++|++|+++
T Consensus 87 ~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~ 131 (176)
T 4hia_A 87 NYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAA 131 (176)
T ss_dssp EECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHH
T ss_pred EEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHH
Confidence 999999999999999999999999999999999999999999883
No 11
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.84 E-value=8e-20 Score=133.88 Aligned_cols=108 Identities=44% Similarity=0.942 Sum_probs=98.5
Q ss_pred ccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCee
Q 016148 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (394)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~ 329 (394)
++++|+++|...++|+|+|+|++|++++||++++++|+++..+.++.........+...+..+.++..+++.+++||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999975447999999999999999999999999988887777777777788888999999999999999999999
Q ss_pred EEEEEeeeeecCCCCEEEEEEEEeecch
Q 016148 330 WNLLHISPIRNASGKIAYFAAVHTEEGC 357 (394)
Q Consensus 330 ~~~~~~~~i~d~~g~~~~~~~~~~DIT~ 357 (394)
|+.+++.|+.|++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999995
No 12
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.84 E-value=5.8e-20 Score=134.63 Aligned_cols=109 Identities=40% Similarity=0.795 Sum_probs=98.4
Q ss_pred hCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCe
Q 016148 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (394)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (394)
+++++|+++|...++|+|+|+|++|++++||+++|++|++...+.++.........+...+..+.++..++..+++||+.
T Consensus 1 ~~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 80 (109)
T 1n9l_A 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred CCccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCE
Confidence 36889999996544599999999999999999999999998777777776667778888999999999999999999999
Q ss_pred EEEEEEEEeeeccCCCeeeEEEEEeccccc
Q 016148 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (394)
Q Consensus 106 ~~v~~~~~~i~~~~~g~~~~~~~~~~DITe 135 (394)
+|+.+++.|+++ .+|.+.+++++++|||+
T Consensus 81 ~~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 81 FWNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 999999999999 99999999999999996
No 13
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.84 E-value=9.8e-20 Score=155.31 Aligned_cols=136 Identities=29% Similarity=0.486 Sum_probs=116.3
Q ss_pred HHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEE
Q 016148 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321 (394)
Q Consensus 242 ~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 321 (394)
.+..+++++|++|+++|....+|+|+++|+++++++||++++++|+++..+.+|.+.+.....+...+..+.++..+++.
T Consensus 64 ~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~ 143 (258)
T 3p7n_A 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILN 143 (258)
T ss_dssp HHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEE
Confidence 46778899999999999842247899999999999999999999999988888888888888888899999999999999
Q ss_pred EecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchh--hhhhHHHHHHHHHHHHhhh
Q 016148 322 YRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCR--NQDRHGLSLEMRQLSAIGA 377 (394)
Q Consensus 322 ~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~--k~~e~~L~~~~~~l~~~~~ 377 (394)
++++|..+|+.++..|+.|.+|.+.+++++++|||++ ++.+.+++...+.+..+..
T Consensus 144 ~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~ 201 (258)
T 3p7n_A 144 YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSP 201 (258)
T ss_dssp ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCH
T ss_pred EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCH
Confidence 9999999999999999999999999999999999999 6667777777777765543
No 14
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.84 E-value=4.5e-20 Score=147.75 Aligned_cols=124 Identities=26% Similarity=0.417 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
+..++|+.+++++|++|+++|.+.+||+|+++|+++++++||++++++|+++..++++.........+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34567899999999999999987666899999999999999999999999988888888888888888899999999999
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
++...+++|..+|+.++..|+++ .+|.+.+++++++|||++|++
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~ 127 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNS 127 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGG
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHH
Confidence 99999999999999999999999 899999999999999999997
No 15
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.83 E-value=3.3e-20 Score=138.72 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=101.1
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHh-ccCeeeEEEEEEe
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ-TEQACTVRILNYR 323 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 323 (394)
.+++++++.|+++|. +|+++|+|+++++++||++++++|+++..+.||++.+.....+...+. .+..+..++++++
T Consensus 6 ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 82 (121)
T 3f1p_B 6 LNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 82 (121)
T ss_dssp --CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEEC
T ss_pred ceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence 467899999999999 899999999999999999999999999999999999888888888774 5557889999999
Q ss_pred cCCCeeEEEEEeeeeecC-CCCEEEEEEEEeecchhhh
Q 016148 324 KDKSSFWNLLHISPIRNA-SGKIAYFAAVHTEEGCRNQ 360 (394)
Q Consensus 324 ~~G~~~~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k~ 360 (394)
++|+.+|+.++..|+.|. +|.+.+++++.+|||++|+
T Consensus 83 ~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 83 KNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred cCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 999999999999999987 7899999999999999986
No 16
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.83 E-value=2.3e-18 Score=148.37 Aligned_cols=120 Identities=9% Similarity=0.067 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe---eeEEEEEEecCCCee
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA---CTVRILNYRKDKSSF 329 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~G~~~ 329 (394)
.+...+. ||+++|+|+++..++||+++|++|+.+..++||+|.+.....+...+..++. ...++|++++||.++
T Consensus 176 Fitrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~v 252 (317)
T 4dj3_A 176 FTTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYV 252 (317)
T ss_dssp EEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEE
T ss_pred eEEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEE
Confidence 3444555 8999999999999999999999999999999999999988888888876554 357899999999999
Q ss_pred EEEEEeeeeecC-CCCEEEEEEEEe--------e-----cchhhhhhHHHHHHHHHHHHh
Q 016148 330 WNLLHISPIRNA-SGKIAYFAAVHT--------E-----EGCRNQDRHGLSLEMRQLSAI 375 (394)
Q Consensus 330 ~~~~~~~~i~d~-~g~~~~~~~~~~--------D-----IT~~k~~e~~L~~~~~~l~~~ 375 (394)
|++....++.|. .+++.+++++.+ | +++++..+.++++.+++...+
T Consensus 253 wvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~ 312 (317)
T 4dj3_A 253 ILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKL 312 (317)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHH
Confidence 999999999986 577777888776 4 455667777888777766543
No 17
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.83 E-value=1.2e-19 Score=136.89 Aligned_cols=126 Identities=39% Similarity=0.710 Sum_probs=105.0
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecC
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 325 (394)
++++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..+++..+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 36788999999998322489999999999999999999999999888888888888888888888889999999999999
Q ss_pred CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHH
Q 016148 326 KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQ 371 (394)
Q Consensus 326 G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~ 371 (394)
|..+|+.++..|+.+.+|.+.+++++++|||++|++|++.++.+.+
T Consensus 82 g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 82 GEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp CCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 9999999999999999999999999999999999999988876543
No 18
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.83 E-value=1.6e-19 Score=137.18 Aligned_cols=115 Identities=37% Similarity=0.692 Sum_probs=99.3
Q ss_pred HHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEec
Q 016148 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (394)
Q Consensus 22 ~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (394)
.++++++++|+++|.++++|+|+|+|+++++++||++++++|+++..+.++.........+...+..+.++..++..+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57999999999999973335999999999999999999999999877777776666667777888888888899999999
Q ss_pred CCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 102 dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
||+.+|+.++..|+.+ .+ +.+++++++|||++|++
T Consensus 83 dG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~ 117 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEY 117 (132)
T ss_dssp TSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHH
T ss_pred CCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHH
Confidence 9999999999999998 44 88899999999999996
No 19
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.82 E-value=5.6e-20 Score=136.57 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCeE
Q 016148 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (394)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (394)
+++.++++|++ |+++|+|+++++++||++++++|+++..++||++.......+...+..+..+..+++++++||+.+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 46788899998 999999999999999999999999999999999888888888888888888888999999999999
Q ss_pred EEEEEEEeeeccC-CCeeeEEEEEecccccccc
Q 016148 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 107 ~v~~~~~~i~~~~-~g~~~~~~~~~~DITe~k~ 138 (394)
|+..+..|+.+ . +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 8999999999999999986
No 20
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.82 E-value=7.3e-20 Score=135.95 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=100.7
Q ss_pred ccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCee
Q 016148 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (394)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~ 329 (394)
+++.|+++|. +|+++|+|+++++++||++++++|+++..+.||++.+.....+...+..+..+..++++++++|..+
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 4678999999 7999999999999999999999999999999999988888888888888888888999999999999
Q ss_pred EEEEEeeeeecC-CCCEEEEEEEEeecchhhhh
Q 016148 330 WNLLHISPIRNA-SGKIAYFAAVHTEEGCRNQD 361 (394)
Q Consensus 330 ~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k~~ 361 (394)
|+.++..|+.|. +|.+.+++++.+|||++|++
T Consensus 85 w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 999999999998 89999999999999999863
No 21
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.82 E-value=2e-19 Score=138.62 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCC--CCccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
.++++|+.++++++.++|.+|++ +.++++|+++.+++||+++++.+. .+..++||++...+...+...+..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 45678899999999999999999 889999999999999999998774 3667889999888888888889888899
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
..++++.++||..+|+...+.|+++ .+|.+.+++|+++|||++|++
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~ 128 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRD 128 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHH
Confidence 9999999999999999999999999 999999999999999999997
No 22
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.81 E-value=3.1e-19 Score=141.15 Aligned_cols=125 Identities=37% Similarity=0.688 Sum_probs=112.9
Q ss_pred HHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEE
Q 016148 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (394)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (394)
...+..++++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+.++..++
T Consensus 34 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 113 (166)
T 3ue6_A 34 DYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCL 113 (166)
T ss_dssp CCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEE
Confidence 34678899999999999998433599999999999999999999999999888888888888888888888899999999
Q ss_pred EEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHH
Q 016148 320 LNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHG 364 (394)
Q Consensus 320 ~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~ 364 (394)
...+++|..+|+.++..|+.+.+|.+.+++++++|||++|+++..
T Consensus 114 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 114 LNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred EEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 999999999999999999999999999999999999999987755
No 23
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.81 E-value=5.7e-19 Score=150.53 Aligned_cols=122 Identities=30% Similarity=0.599 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
..++|+.+++++|++|+++|..+++|+|+|+|++|++++||++++++|+++..+.+++........+...+..+.++..+
T Consensus 61 ~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e 140 (258)
T 3p7n_A 61 PAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVE 140 (258)
T ss_dssp CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEE
Confidence 44679999999999999999921118999999999999999999999999988888888888888888999999999999
Q ss_pred EeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 96 ~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
...+++||..+|+.++..|+++ .+|.+.+++++++|||++|.
T Consensus 141 ~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 141 ILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred EEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 9999999999999999999999 99999999999999999954
No 24
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.80 E-value=7.8e-19 Score=138.31 Aligned_cols=133 Identities=27% Similarity=0.475 Sum_probs=117.9
Q ss_pred HHHHHHHhcccceEEEEcCCCCCc---CEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
..+..++++++++++++|. +| +|+++|+++++++|++.++++|+++..+.++.........+...+..+..+..
T Consensus 25 ~~~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCRE 101 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcc
Confidence 4577889999999999999 78 99999999999999999999999998888888777778888888888999999
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHHhh
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAIG 376 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~~ 376 (394)
++...+++|..+|+.++..|+.+.+|.+.+++++++|||++|++|++|+.++++++...
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~~~ 160 (162)
T 3sw1_A 102 VLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKPDE 160 (162)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC------
T ss_pred eEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888877654
No 25
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.80 E-value=4.4e-19 Score=140.30 Aligned_cols=123 Identities=39% Similarity=0.654 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
...++..++++++++++++|...++|+|+++|+++++++||++++++|+++..++++.........+...+..+.++..+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 112 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVC 112 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEE
Confidence 34578899999999999999921129999999999999999999999999888888888777788888888899999999
Q ss_pred EeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 96 ~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
....+++|..+|+.++..|+.+ .+|.+.+++++++|||++|.+
T Consensus 113 ~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 113 LLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 9999999999999999999999 899999999999999999986
No 26
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.79 E-value=6.8e-19 Score=131.83 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcC--CCCccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
.++++|+.++++++.++|++|.+ +.++++|+++++++||++++++| ..+..+++|++...+...+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 45568899999999999999999 99999999999999999999998 44566778888888888888888888888
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
..++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 9999999999999999999999999 89999999999999999985
No 27
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.79 E-value=1.1e-18 Score=131.63 Aligned_cols=116 Identities=36% Similarity=0.669 Sum_probs=104.8
Q ss_pred HHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecC
Q 016148 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102 (394)
Q Consensus 23 l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 102 (394)
++++++++++++|..+++|+|+++|+++++++||++++++|+++..++++.........+...+..+..+..++...+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 57889999999999211299999999999999999999999998888888887777888888888888899999999999
Q ss_pred CCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 103 G~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
|..+|+.++..|+.+ .+|.+.+++++++|||++|++
T Consensus 82 g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 117 (128)
T 3t50_A 82 GEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVP 117 (128)
T ss_dssp CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-
T ss_pred CCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhh
Confidence 999999999999999 899999999999999999997
No 28
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.79 E-value=2.7e-18 Score=126.51 Aligned_cols=114 Identities=40% Similarity=0.765 Sum_probs=100.7
Q ss_pred HHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecC
Q 016148 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102 (394)
Q Consensus 23 l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 102 (394)
.+++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+..+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 57899999999999211299999999999999999999999998888888877777788888888998899999999999
Q ss_pred CCeEEEEEEEEeeeccCCCeeeEEEEEeccccccc
Q 016148 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 103 G~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 82 g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 82 GKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred CCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999 8999999999999999974
No 29
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.78 E-value=2.9e-18 Score=134.52 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=109.5
Q ss_pred HHHHHHHhcccceEEEEc-CCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEE-
Q 016148 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR- 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d-~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e- 318 (394)
..+..+++++|++++++| . +|+|+++|+++++++|++ +++|+++..++++.........+..++..|.+...+
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 91 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 91 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccc
Confidence 457888999999999999 7 799999999999999999 899999988887766666777778888777775543
Q ss_pred EEE--Ee-cC-CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHHh
Q 016148 319 ILN--YR-KD-KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 375 (394)
Q Consensus 319 ~~~--~~-~~-G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 375 (394)
..+ .+ .+ |..+|+.++..|+.+.+|.+.+++++++|||++|++|++|++..++++..
T Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~ 152 (158)
T 3k3c_A 92 WRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSER 152 (158)
T ss_dssp EEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC
T ss_pred eeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 222 22 22 67899999999999999999999999999999999999998887777654
No 30
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.78 E-value=4.3e-18 Score=142.13 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=107.3
Q ss_pred EEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCeeEEEE
Q 016148 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333 (394)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~ 333 (394)
|+++|. +|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+.++++.+++||..+|+.+
T Consensus 2 i~i~D~---~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEET---TCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECC---CCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 678898 79999999999999999999999999888777777777777788888899999999999999999999999
Q ss_pred EeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHH
Q 016148 334 HISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSA 374 (394)
Q Consensus 334 ~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~ 374 (394)
+..|+.|.+|.+.+++++.+|||++|++|++|+.....++.
T Consensus 79 ~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~ 119 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDA 119 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999877666654
No 31
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.78 E-value=9.7e-19 Score=129.38 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=98.6
Q ss_pred ccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCc-ccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCe
Q 016148 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSS 328 (394)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~ 328 (394)
+++++|.+|.. +|+++|+|+++++++||+++++.|.. +..+.||++.+.....+...+..+.++..++++++++|..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 46899999964 68999999999999999999999842 3557889988888888888888888899999999999999
Q ss_pred eEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhH
Q 016148 329 FWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRH 363 (394)
Q Consensus 329 ~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~ 363 (394)
+|+..++.|+.|.+|.+.+++|+..|||++|.+|+
T Consensus 80 ~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 80 VWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999875
No 32
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.78 E-value=3.6e-17 Score=140.60 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=86.9
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe-ee-EEEEEEecCCCeeE
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CT-VRILNYRKDKSSFW 330 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~~G~~~~ 330 (394)
.+...+. ||+++|+|+++..++||.++|++|+.+..++||+|.+.....+...+..++. .. .++|++++||.++|
T Consensus 167 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 3445555 8999999999999999999999999999999999998888888888875544 55 58999999999999
Q ss_pred EEEEeeeeecC-CCCEEEEEEEEeecch
Q 016148 331 NLLHISPIRNA-SGKIAYFAAVHTEEGC 357 (394)
Q Consensus 331 ~~~~~~~i~d~-~g~~~~~~~~~~DIT~ 357 (394)
++....++.+. .+++.+++++.+-++.
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999999886 6788888888777664
No 33
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.78 E-value=6.3e-19 Score=131.50 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=93.1
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCC-hhHHHHHHHHHHhCCCeeEEEe
Q 016148 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (394)
Q Consensus 19 ~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (394)
.|+.+++++|++++ ++.+ |+|+++|+++++++||++++++|+++..+++++.. ......+...+..+..+..+..
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 37789999999996 4667 99999999999999999999999998776654322 3344556666777788889999
Q ss_pred eEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 98 ~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+.++||+.+|+.++..|+ + .+|.+.+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~-~-~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRAL-D-RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEES-S-TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEEC-C-CCCCceeEEEEEEcccHhhcc
Confidence 999999999999999999 4 466677899999999999984
No 34
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.78 E-value=7.6e-18 Score=124.03 Aligned_cols=114 Identities=41% Similarity=0.843 Sum_probs=101.5
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecC
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 325 (394)
++++++++++++|...++|+|+++|+++++++||++++++|+++..+.++.........+...+..+..+..+++..+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46889999999998433499999999999999999999999998888888887777788888888899999999999999
Q ss_pred CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhh
Q 016148 326 KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRN 359 (394)
Q Consensus 326 G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k 359 (394)
|..+|+.++..|+.+.+|.+.+++++++|||+++
T Consensus 82 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 82 GKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 9999999999999999999999999999999974
No 35
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.77 E-value=3.5e-18 Score=127.93 Aligned_cols=118 Identities=14% Similarity=0.003 Sum_probs=96.4
Q ss_pred HHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcC--CcccccccCCCchhHHHHHHHHHhccCeeeE
Q 016148 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (394)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
...+..++++++++++++|. ++.++++|+++++++||+++++.| ..+..+.+|++.......+...+..+.++..
T Consensus 6 ~~~l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 3nja_A 6 EKLLHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDV 82 (125)
T ss_dssp -----------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceE
Confidence 34577789999999999999 799999999999999999999998 4556678898888888888888888888999
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhh
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQ 360 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~ 360 (394)
++++.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 83 e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 83 EYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 9999999999999999999999999999999999999999984
No 36
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.77 E-value=2e-17 Score=142.72 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=87.6
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhc-cCee-eEEEEEEecCCCeeE
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT-EQAC-TVRILNYRKDKSSFW 330 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~~~G~~~~ 330 (394)
.+...+. ||+++|+|+++..++||.++|++|+.+..++||+|.+.....+...+.. |... ..++|++++||.++|
T Consensus 178 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 254 (320)
T 4dj2_A 178 FTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 254 (320)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEE
T ss_pred EEEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEE
Confidence 3445555 8999999999999999999999999999999999988888888887774 4445 468999999999999
Q ss_pred EEEEeeeeecC-CCCEEEEEEEEeecchh
Q 016148 331 NLLHISPIRNA-SGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 331 ~~~~~~~i~d~-~g~~~~~~~~~~DIT~~ 358 (394)
++...+++.+. .+++.+++++.+-|+..
T Consensus 255 vet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 255 MDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 99999999886 67888889988777654
No 37
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.77 E-value=4.2e-18 Score=126.78 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=79.8
Q ss_pred ccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe----eeEEEEEEecC
Q 016148 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----CTVRILNYRKD 325 (394)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~~ 325 (394)
++++|+++|. +|+|+++|+++++++||++++++|+++..+.++.........+......+.. ...++..+++|
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 5789999998 7999999999999999999999999987776655443333333343333332 34567778999
Q ss_pred CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHH
Q 016148 326 KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSL 367 (394)
Q Consensus 326 G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~ 367 (394)
|+.+|+.++..|+.+.. ..+++++++|||++|++|++|++
T Consensus 79 G~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp SCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred CCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 99999999999997643 34689999999999999998864
No 38
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=1.5e-17 Score=147.31 Aligned_cols=129 Identities=38% Similarity=0.753 Sum_probs=114.7
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecC
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 325 (394)
++++++++|+++|.+.++|+|+++|+++++++||++++++|+++..+.+|++.......+...+..+..+..+++.+++|
T Consensus 16 ~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 95 (332)
T 2wkq_A 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKS 95 (332)
T ss_dssp CGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred HhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCC
Confidence 46889999999998444599999999999999999999999999888888888888888888999999999999999999
Q ss_pred CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHH
Q 016148 326 KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSA 374 (394)
Q Consensus 326 G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~ 374 (394)
|..+|+.++..|+.|.+|.+.+++++++|||++|+.+++++......+.
T Consensus 96 G~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~~~~~~~~ 144 (332)
T 2wkq_A 96 GKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKT 144 (332)
T ss_dssp CCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccchhhHhhh
Confidence 9999999999999999999999999999999999998877644433333
No 39
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.77 E-value=1.6e-18 Score=129.30 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=91.7
Q ss_pred HHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCc-hhHHHHHHHHHhccCeeeEEEEE
Q 016148 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQIKESIQTEQACTVRILN 321 (394)
Q Consensus 243 ~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~ 321 (394)
++.+++++|++|++ +. +|+|+++|+++++++||++++++|+++..++++... ......+...+..+..+..++++
T Consensus 5 ~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 66789999999964 66 699999999999999999999999998776654322 34445566667778889999999
Q ss_pred EecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhh
Q 016148 322 YRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQD 361 (394)
Q Consensus 322 ~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~ 361 (394)
++++|..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 81 ~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred EeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 99999999999999999 5566666889999999999975
No 40
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.77 E-value=1e-17 Score=124.60 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
..+.++.++++++++++++|.+ |+|+++|+++++++|+++++++|+++..+.++.........+...+..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 4568899999999999999998 9999999999999999999999999876666666666667788888888888889
Q ss_pred EeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 96 ~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
....+++|..+|+.++..|+.+ .+|.+.|++++++|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 9999999999999999999999 89999999999999999986
No 41
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.76 E-value=2.4e-18 Score=127.26 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCC-CccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCe
Q 016148 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (394)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (394)
+++++|.+|.. +++++|+|+++++++||++++++|.. +..++||++.......+...+..+.++..+++++++||+.
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 57899999954 28999999999999999999999832 4567888888888888888888888899999999999999
Q ss_pred EEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 106 ~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+|+..+..|+++ .+|++.+++|+..|||++|.+
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~ 112 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHH 112 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC-
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCccccc
Confidence 999999999999 999999999999999999987
No 42
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.76 E-value=1.1e-17 Score=126.70 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=94.4
Q ss_pred hhHHHHhhhHHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHH
Q 016148 6 GLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREA 85 (394)
Q Consensus 6 ~~~~~~~~~r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (394)
...++++. ++..+|+.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..++++.........+...
T Consensus 5 ~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~ 80 (130)
T 1d06_A 5 LETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRY 80 (130)
T ss_dssp HHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHH
Confidence 34444444 45567899999999999999999 999999999999999999999999988777665444333344444
Q ss_pred HHhCCC----eeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 86 IREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 86 ~~~~~~----~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
...+.. ...+...+++||+.+|++++..|+.+ . +. .+++++++|||
T Consensus 81 ~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DIT 130 (130)
T 1d06_A 81 MATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-GE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC
T ss_pred HhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEECc
Confidence 444432 23467778999999999999999987 3 33 35889999998
No 43
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.75 E-value=2.5e-17 Score=122.11 Aligned_cols=110 Identities=10% Similarity=0.123 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
.+.++|+.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++... .........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCcEEE
Confidence 45678999999999999999999 99999999999999999999999987665443322 223344555667777888
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
+.+.+++||+.+|+.++..|+.+ |. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~~---g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLPD---GK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECTT---SC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEecC---Ce---EEEEEEeCC
Confidence 99999999999999999999854 54 678899998
No 44
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.75 E-value=9.5e-18 Score=135.33 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=98.5
Q ss_pred HHHHHHHhcccceEEEEc-CCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEE-
Q 016148 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR- 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d-~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e- 318 (394)
..+..+++++|++++++| . +|+|+++|+++++++|++ +++|+++..++++.........+..++..|.+...+
T Consensus 37 ~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 37 EDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp HHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 457788999999999999 7 799999999999999999 899999988887766665666777788777776554
Q ss_pred EEE--Eec-C-CCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHH----HHHHHHHHHHhhh
Q 016148 319 ILN--YRK-D-KSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHG----LSLEMRQLSAIGA 377 (394)
Q Consensus 319 ~~~--~~~-~-G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~----L~~~~~~l~~~~~ 377 (394)
... .++ + |..+|+.++..|+.+.+|.+.+++++++|||++|++|++ |++++++++.+..
T Consensus 112 ~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~ 178 (185)
T 3kx0_X 112 WRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRD 178 (185)
T ss_dssp EEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC------------------
T ss_pred eeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322 222 2 788999999999999999999999999999999999999 8888877776533
No 45
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.75 E-value=8.9e-17 Score=123.26 Aligned_cols=130 Identities=37% Similarity=0.774 Sum_probs=112.7
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
.++++++++++++|...++|+++++|+++++++|++.++++|+++..+.++.........+...+..+.++..++...++
T Consensus 6 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146)
T 2v0u_A 6 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTK 85 (146)
T ss_dssp CTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred HHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEec
Confidence 35788999999999832248999999999999999999999999988888888877788888888888889999999999
Q ss_pred CCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHHHh
Q 016148 325 DKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 375 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 375 (394)
+|..+|+.++..|+.+.+|.+.+++++++|||++|+ +++++++.++++.+
T Consensus 86 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~ 135 (146)
T 2v0u_A 86 SGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKT 135 (146)
T ss_dssp TCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 55555556555554
No 46
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.75 E-value=7.9e-18 Score=129.73 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCee
Q 016148 14 NRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (394)
Q Consensus 14 ~r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
++....|+.+++++++||+++|.+ |+|++||+++++++|+++++++|+++.+++++ ....+...+..++..|.+..
T Consensus 18 ~~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~ 93 (152)
T 3mxq_A 18 AKSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSF 93 (152)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCcee
Confidence 356667899999999999999999 99999999999999999999999998888876 55555667888888776532
Q ss_pred EE---------Eee---EecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 94 VN---------LLN---YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 94 ~e---------~~~---~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
.. +.. ..++|..+|..+++.|+.+ .+|++.|++++++|||+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp EECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred eecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 111 2346778899999999999 999999999999999999875
No 47
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.75 E-value=4.9e-17 Score=121.89 Aligned_cols=121 Identities=37% Similarity=0.754 Sum_probs=105.6
Q ss_pred HHHHHHHhcccceEEEEc---CCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeE
Q 016148 241 SSLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d---~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
..+..++++++++++++| . +|+++++|+++++++|++.++++|+++..+.++.........+...+..+..+..
T Consensus 6 ~~~~~~~~~~~~~i~~~d~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 6 QELKTALSTLQQTFVVSDATQP---HCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp -CHHHHHHHTTCEEEEEETTST---TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcccceeeeeccCC---CCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 346788999999999999 6 7999999999999999999999999998888887777777778888888888888
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHH
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHG 364 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~ 364 (394)
++...+++|..+|+.+...|+.+.+|.+.+++++++|||++|++|++
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 88888999999999999999999999999999999999999987753
No 48
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.74 E-value=4.5e-17 Score=122.07 Aligned_cols=121 Identities=38% Similarity=0.743 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEc---CCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC
Q 016148 15 RYTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d---~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (394)
+..+.++.++++++++++++| .+ |+|+++|+++++++|++.++++|+++..+.++.........+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 345678899999999999999 77 999999999999999999999999988888887777777778888888888
Q ss_pred eeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 92 ~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+..+....+++|..+|+.+...|+.+ .+|.+.+++++++|||+++++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 126 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEG 126 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC--
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHh
Confidence 88888888999999999999999999 899999999999999999986
No 49
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.74 E-value=7.2e-17 Score=119.97 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=104.3
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (394)
..+..++++++++++++|. +|+++++|+++++++|++.++++|+++..+.++.........+...+..+.++..++.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 4577889999999999998 7999999999999999999999999988666666666666777888888888999999
Q ss_pred EEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhh
Q 016148 321 NYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQ 360 (394)
Q Consensus 321 ~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~ 360 (394)
...++|..+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 MLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred EEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 9999999999999999999999999999999999999986
No 50
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.74 E-value=1.1e-17 Score=124.02 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCC--CccccCCCCChhHHHHHHHHHHhCCCee
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIE 93 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
+.++|+.+++++|+++|.+|.+ +.++++|+++.+++||+++++++.+ +..+++|++...+...+...+..+.++.
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 3467899999999999999999 9999999999999999999988875 3567888888888888888888888889
Q ss_pred EEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 94 ~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
.++++.+++|..+|+.....|+++ .+|.+.+++|+++|||
T Consensus 79 ~e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 999999999999999999999999 8999999999999998
No 51
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.74 E-value=2.3e-17 Score=121.25 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=92.3
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE-EE
Q 016148 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV-NL 96 (394)
Q Consensus 18 ~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~ 96 (394)
++|+.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++..++ |+........+...+. +..... +.
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 56889999999999999998 999999999999999999999999987776 5555555555555555 444444 33
Q ss_pred eeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 97 ~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
.+.+++|..+|+.++..|+++ .+|.+.|++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778899999999999999999 8999999999999998
No 52
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.73 E-value=2.9e-17 Score=128.70 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEc-CCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCee
Q 016148 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d-~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
+..++|+.+++++|.+++++| .+ |+|+++|+++++++|++ +++|+++..++++.........+.+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 455789999999999999999 88 99999999999999999 8999998888877766666777888888888765
Q ss_pred EEEeeE---e-cC-CCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 94 VNLLNY---K-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 94 ~e~~~~---~-~d-G~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
.+.... + .+ |..+|+.++..|+++ .+|.+.|++++++|||++|++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~ 138 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRA 138 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHH
Confidence 443222 2 22 778999999999999 899999999999999999996
No 53
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.73 E-value=1e-16 Score=118.84 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=89.4
Q ss_pred chhhhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe
Q 016148 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (394)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
.+......++.++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++... .........+..+..
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEP 80 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCC
T ss_pred HHHHhHHHHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCc
Confidence 3445566788999999999999999 799999999999999999999999987665443322 222334455666777
Q ss_pred eeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 315 ~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
+..+.+.+++||+.+|+.++..|+. +|. ++++++|||
T Consensus 81 ~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 81 LREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 8889999999999999999999986 565 578899998
No 54
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.73 E-value=5.3e-17 Score=127.68 Aligned_cols=120 Identities=24% Similarity=0.461 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCC---cEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~---~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
..++++.++++++++++++|.+ | +|+++|+++++++||+.++++|+++..++++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4568899999999999999999 8 999999999999999999999999888888877777778888888889889
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
..++...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~ 145 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVEL 145 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHH
Confidence 8999989999999999999999999 899999999999999999997
No 55
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.72 E-value=6.7e-17 Score=120.17 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred hCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC----eeEEEeeEec
Q 016148 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (394)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (394)
+++++|+++|.+ |+|+++|+++++++||++++++|+++..++++.........+......+.. ...+....++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999999 999999999999999999999999987777655443333334444444432 2356677899
Q ss_pred CCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 102 dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
||+.+|++++..|+.+ . +. .+++++++|||++|++
T Consensus 78 dG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DITerk~~ 112 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS-G-GE-PYFTGFVRDLTEHQQT 112 (119)
T ss_dssp TSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC-----
T ss_pred CCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEEcHHHHHH
Confidence 9999999999999987 3 33 4689999999999987
No 56
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-17 Score=119.68 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=97.0
Q ss_pred HHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCC-CeeEEEeeEe
Q 016148 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (394)
Q Consensus 22 ~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (394)
.++++++++++++|.+ |+|+|+|+++++++||++++++|+++..+++|++.......+...+..+. ....++++.+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 4678899999999999 99999999999999999999999998888888887776666666666544 4578889999
Q ss_pred cCCCeEEEEEEEEeeeccCC-CeeeEEEEEeccccccc
Q 016148 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (394)
Q Consensus 101 ~dG~~~~v~~~~~~i~~~~~-g~~~~~~~~~~DITe~k 137 (394)
+||+.+|+..+..|+++ .. |.+.+++++.+|||+.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999998 54 56778899999999875
No 57
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.71 E-value=4.3e-17 Score=125.60 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=91.9
Q ss_pred HHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEE---
Q 016148 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR--- 318 (394)
Q Consensus 242 ~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e--- 318 (394)
.+..+++++++||+++|. +|+|+++|+++++++|+++++++|+++.++++. ....+...+..++..|.+....
T Consensus 23 ~l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~ 98 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQ 98 (152)
T ss_dssp HHHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCS
T ss_pred HHHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeeccc
Confidence 357788999999999999 899999999999999999999999999888876 5556666778888877653221
Q ss_pred ------EEE---EecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhh
Q 016148 319 ------ILN---YRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDR 362 (394)
Q Consensus 319 ------~~~---~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e 362 (394)
+.. ...+|...|..++..|+.|.+|++.|++.+++|||+++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp SSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred ccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 111 23467788999999999999999999999999999998764
No 58
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.71 E-value=3.6e-16 Score=114.80 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (394)
+.++.+++++|++++++|. +|+++++|+++++++|+++++++|+++..++ |++.......+...+.++.....+..
T Consensus 3 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeE
Confidence 3577889999999999998 7999999999999999999999999987776 66666555555555554443444447
Q ss_pred EEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 321 NYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 321 ~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
..+++|..+|+.++..|+.+.+|.+.+++++++|||
T Consensus 79 ~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 79 FVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 788999999999999999999999999999999998
No 59
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.71 E-value=8.7e-17 Score=129.65 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEc-CCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCee
Q 016148 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d-~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
+..++|+.+++++|++++++| .+ |+|+++|+++++++|++ +++|+++..++++.........+..++..+.+..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 456789999999999999999 88 99999999999999999 8999998888877766666777888888888765
Q ss_pred EEEeeE---ec-C-CCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 94 VNLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 94 ~e~~~~---~~-d-G~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
.+.... ++ + |..+|+.++..|+++ .+|.+.|++++++|||++|++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~ 158 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRA 158 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTT
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHH
Confidence 543222 22 2 788999999999999 899999999999999999997
No 60
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.70 E-value=1.4e-16 Score=141.05 Aligned_cols=118 Identities=38% Similarity=0.739 Sum_probs=107.5
Q ss_pred HHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEe
Q 016148 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (394)
Q Consensus 21 ~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (394)
..+++++|++++++|...++|+|+++|+++++++||++++++|+++..+.+++........+...+..+.++..+++..+
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 93 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYT 93 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEc
Confidence 35789999999999991112999999999999999999999999998888888888778888899999999999999999
Q ss_pred cCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 101 ~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+||+.+|+.++..|+++ .+|.+.|++++++|||++++.
T Consensus 94 ~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~ 131 (332)
T 2wkq_A 94 KSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 131 (332)
T ss_dssp TTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred CCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhh
Confidence 99999999999999999 899999999999999999986
No 61
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.70 E-value=9.1e-17 Score=118.94 Aligned_cols=114 Identities=9% Similarity=-0.018 Sum_probs=104.1
Q ss_pred HHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcc--cccccCCCchhHHHHHHHHHhccCeeeE
Q 016148 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQIKESIQTEQACTV 317 (394)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
.+.++.++++++++++.+|. ++.++++|+++++++||+++++.+... ..+.+|++.+.....+...+..+.++..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 34678899999999999999 799999999999999999999888754 5678899888888888888888889999
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
++++.+++|..+|+...+.|+.+.+|.+.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 999999999999999999999999999999999999998
No 62
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=117.54 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=96.6
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhc-cCeeeEEEEEEec
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT-EQACTVRILNYRK 324 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~ 324 (394)
++++++++|+++|. +|+++++|+++++++||++++++|+++..+.+|++.......+...+.. +.....+++++++
T Consensus 8 ~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~ 84 (121)
T 2kdk_A 8 INVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAK 84 (121)
T ss_dssp CCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECS
T ss_pred cccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEc
Confidence 35788999999999 7999999999999999999999999988888998887777777776765 4446788999999
Q ss_pred CCCeeEEEEEeeeeecCC-CCEEEEEEEEeecchhh
Q 016148 325 DKSSFWNLLHISPIRNAS-GKIAYFAAVHTEEGCRN 359 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~-g~~~~~~~~~~DIT~~k 359 (394)
+|+.+|+.++..|+.|.. +.+.+++++.+||++.+
T Consensus 85 dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 85 DGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred CCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 999999999999999876 56777899999999875
No 63
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.70 E-value=1.1e-16 Score=121.14 Aligned_cols=110 Identities=22% Similarity=0.231 Sum_probs=87.2
Q ss_pred HHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe----eeE
Q 016148 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----CTV 317 (394)
Q Consensus 242 ~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ 317 (394)
.++.++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++.+.......+......+.. ...
T Consensus 17 ~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 17 HLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp CHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCee
Confidence 467789999999999999 7999999999999999999999999988777665544433344444433332 235
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
++..+++||+.+|+.++..|+.+.. ..+++++++|||
T Consensus 94 e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred EEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 6777899999999999999997643 346899999998
No 64
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.69 E-value=3.3e-16 Score=120.03 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=106.3
Q ss_pred HHHHHhhCCCeEEEEcC---CCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEE
Q 016148 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (394)
Q Consensus 20 l~~l~~~~~~~i~~~d~---~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (394)
|+.++++++++++++|. + ++|+++|+++++++||++++++|+++..+.++.........+...+..+.++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 44688999999999999 7 99999999999999999999999998888888877777788888888888888999
Q ss_pred eeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 97 ~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 999999999999999999999 899999999999999999874
No 65
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.68 E-value=2.1e-16 Score=118.32 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
.++++++++++++|. +|+|+++|+++++++|+++++++|+++..+.++.+.......+...+..+.. ..++++.++
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKK 78 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECT
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEcc
Confidence 357889999999999 7999999999999999999999999988888877776666666666655544 778888899
Q ss_pred CCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHH
Q 016148 325 DKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMR 370 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~ 370 (394)
+|..+|+.++..|+.+ +...+++++++|||++|+++++++.+..
T Consensus 79 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~~ 122 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEHH 122 (126)
T ss_dssp TSCEEEEEEEEEEEES--SSSEEEEEEEEECC--------------
T ss_pred CCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhhc
Confidence 9999999999987764 3356789999999999999988776543
No 66
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.67 E-value=9.7e-16 Score=113.32 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
+..+.++.++++++++++++|.+ |+|+++|+++++++||++++++|+++..+.++..... ...+..+..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 81 (118)
T 3olo_A 10 LEFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEE
Confidence 34456789999999999999998 9999999999999999999999999877764433222 233444567778
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
+..+.+++|..+|+.++..|+.+ +|.. +++++++|||
T Consensus 82 e~~~~~~~g~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRYRSQSGRIFLVEMSLTFLED--QERR-FSCVFVREKS 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred EEEEEccCCCEEEEEEEEEEEEE--CCcc-EEEEEEEeCC
Confidence 88889999999999999999987 4443 6779999997
No 67
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.66 E-value=8.8e-16 Score=114.32 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHhcccceEEEEcCCCCC-cCEEEeCHHHHHHhcCCchhhcCCc--ccccccCCCchhHHHHHHHHHhccC
Q 016148 237 GFISSSLYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQ 313 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~d~~~~d-g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (394)
......+..++++++++++++|. + |+++++|+++++++|+++++++|.. +..+.+|++.......+.. +..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (125)
T 3eeh_A 7 AKSERRVRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGE 82 (125)
T ss_dssp ---CHHHHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCC
Confidence 34455788899999999999999 6 9999999999999999999999887 4556667666665555555 56677
Q ss_pred eeeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 314 ~~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
.+..+++..+++|..+|+.++..|+.+.+|.+.+++++++|||
T Consensus 83 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 83 SADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 7888999999999999999999999999999999999999998
No 68
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.65 E-value=3.6e-15 Score=108.06 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=92.0
Q ss_pred CeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCC--CccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCeE
Q 016148 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (394)
Q Consensus 29 ~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (394)
.+++++|...++|+|+++|+++++++||++++++|++ ...+.++.........+...+..+..+..+....+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788999754459999999999999999999999998 45555555555556777788888888888888889999999
Q ss_pred EEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 107 ~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999999 899999999999999985
No 69
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.65 E-value=5.2e-15 Score=107.16 Aligned_cols=107 Identities=28% Similarity=0.527 Sum_probs=92.2
Q ss_pred ceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCc--ccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCee
Q 016148 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (394)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~ 329 (394)
.+++++|...++|+|+++|+++++++|+++++++|++ +..+.++.........+...+..+..+..++...+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788999754469999999999999999999999998 45555555555666777777888888888888889999999
Q ss_pred EEEEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 330 WNLLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 330 ~~~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
|+.++..|+.+.+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 99999999999999999999999999975
No 70
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.65 E-value=3.5e-15 Score=111.89 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchh--cCCCCccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI--IGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
++.++|+.+++++|++|+++|.+ |+|+++|+++++++||+++++ +|++...+.+ +.......+.. ...+...
T Consensus 14 ~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~-~~~~~~~ 87 (126)
T 3bwl_A 14 ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSG-FSVDERR 87 (126)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHT-CCTTCEE
T ss_pred HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHH-HhcCCCc
Confidence 56678999999999999999999 999999999999999999999 4666555554 22222221111 1123344
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
.++..+.++||+.+|+.++..|+.. +|.. +++++++|||
T Consensus 88 ~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 88 KFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred ceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 5667778999999999998888755 5655 5788999998
No 71
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.65 E-value=4.2e-15 Score=112.65 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=99.8
Q ss_pred HHHHHHHhhCCCeEEEEcC---CCCCCcEEEechhhHHhcCCCcchhcCCC--CccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 18 LWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 18 ~~l~~l~~~~~~~i~~~d~---~~~d~~i~~~N~a~~~~~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
+.+...+++++.+++++|. + |+|+++|+++++++||+.++++|++ +..+.++.........+...+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 4556677889999999999 7 9999999999999999999999998 566666666666566777777777788
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
..+....+++|..+|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 8888888999999999999999999 899999999999999975
No 72
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.65 E-value=1.5e-16 Score=151.48 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=105.5
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEee
Q 016148 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (394)
Q Consensus 19 ~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (394)
++..++++++++++++|.+ |+|+|+|+++++++||+.++++|++.....++++... ...+.+.+..++.+..|++.
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 4677899999999999999 9999999999999999999999998777777766554 56677888888899999999
Q ss_pred EecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 99 ~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+++||+.+|+.++..|++| .+|++.|++++++|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 999999999999999999986
No 73
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.64 E-value=9.4e-16 Score=114.17 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCC--CccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
++.++|+.++++++++++++|.+. |+++++|+++++++||++++++|.+ +..+++|++...+...+.. +..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~~--~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTADL--SEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETTS--SCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcCC--CcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 456788999999999999999862 7999999999999999999999887 5556666655555555544 6677778
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
..++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8899989999999999999999999 8999999999999998
No 74
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.63 E-value=1e-15 Score=114.60 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=90.4
Q ss_pred HHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEe
Q 016148 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (394)
Q Consensus 21 ~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (394)
+.++++++++++++|.+ |+|+++|+++++++||++++++|+++..++++.+.......+......+.. ..++.+.+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 46889999999999998 999999999999999999999999988888777766666666666655554 77888889
Q ss_pred cCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 101 ~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
++|..+|+.++..|+.. + ...+++++++|||++|++
T Consensus 78 ~~g~~~~~~~~~~~~~~--~-~~~~~~~~~~DITe~k~a 113 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW--H-NEPCLFAIIKDLSKEERA 113 (126)
T ss_dssp TTSCEEEEEEEEEEEES--S-SSEEEEEEEEECC-----
T ss_pred cCCCEEEEEEEEEeeeE--C-CceEEEEEEEechHHHHh
Confidence 99999999999887765 3 356889999999999987
No 75
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.62 E-value=1.9e-14 Score=108.99 Aligned_cols=118 Identities=25% Similarity=0.487 Sum_probs=100.7
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCc--ccccccCCCchhHHHHHHHHHhccCeeeEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (394)
..+...+++++++++++|...++|+|+++|+++++++|++.++++|++ +..+.++.........+...+..+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVE 98 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeE
Confidence 445666788999999999832248999999999999999999999998 555666666666667777788888888888
Q ss_pred EEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 319 ILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 319 ~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
+...+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 99 IAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 8888999999999999999999999999999999999975
No 76
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.62 E-value=7.9e-15 Score=108.34 Aligned_cols=106 Identities=11% Similarity=0.153 Sum_probs=85.6
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (394)
..+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++..... ...+..+..+.++.+
T Consensus 13 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~ 84 (118)
T 3olo_A 13 KFAHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFKTR 84 (118)
T ss_dssp HHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEEEE
T ss_pred HHHHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEEEE
Confidence 4466789999999999998 79999999999999999999999999877764332222 233445667888999
Q ss_pred EEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 321 NYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 321 ~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
+.+++|..+|+.++..|+.+.. . .+++++++|||
T Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~-~-~~~~~~~~DIT 118 (118)
T 3olo_A 85 YRSQSGRIFLVEMSLTFLEDQE-R-RFSCVFVREKS 118 (118)
T ss_dssp EECTTCCEEEEEEEEEEEEETT-E-EEEEEEEEEC-
T ss_pred EEccCCCEEEEEEEEEEEEECC-c-cEEEEEEEeCC
Confidence 9999999999999999997643 3 46789999997
No 77
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.60 E-value=4.8e-15 Score=116.81 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=86.3
Q ss_pred HHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCe----eeE
Q 016148 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----CTV 317 (394)
Q Consensus 242 ~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ 317 (394)
.+..++++++++++++|. +|+++++|+++++++|++.++++|+++..+.++.........+......+.. +..
T Consensus 41 ~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 117 (167)
T ss_dssp CHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccce
Confidence 467889999999999998 7999999999999999999999999988887776655555555555554433 455
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHH
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSL 367 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~ 367 (394)
++...+++|..+|+.++..|+ +.+|.+ +++++++|||++|++|++|+.
T Consensus 118 ~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 118 ELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp EEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred EEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 777889999999999999999 556766 489999999999999888764
No 78
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.60 E-value=1e-14 Score=112.80 Aligned_cols=107 Identities=34% Similarity=0.551 Sum_probs=93.9
Q ss_pred HHHHhhCCCeEEEEc---CCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCC-----------ChhHHHHHHHHH
Q 016148 21 HEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAI 86 (394)
Q Consensus 21 ~~l~~~~~~~i~~~d---~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~-----------~~~~~~~~~~~~ 86 (394)
..++++. ++++++| .+ |+|+++|+++++++||++++++|+++..+.+++. .......+...+
T Consensus 29 ~~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (149)
T 3d72_A 29 LGPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAI 104 (149)
T ss_dssp CCSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHH
T ss_pred HHhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHH
Confidence 3466664 8999999 56 9999999999999999999999999888877663 566667778888
Q ss_pred HhCCCeeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecc
Q 016148 87 REERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (394)
Q Consensus 87 ~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~D 132 (394)
..+..+..+....+++|+.+|+.++..|+++ .+|.+.+++++++|
T Consensus 105 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 105 DRNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HHTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred HCCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 8888888999999999999999999999999 89999999999887
No 79
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.60 E-value=5.2e-15 Score=111.08 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=84.6
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCC------
Q 016148 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (394)
Q Consensus 17 ~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 90 (394)
.+.+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++..++++++.......+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 356889999999999999999 99999999999999999999999998888877665432222222222221
Q ss_pred -CeeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccc
Q 016148 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (394)
Q Consensus 91 -~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe 135 (394)
....++...++||+.+|++++++|+.+ . .. .++++++|...
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~-~--~~-~~v~~~~~~~~ 124 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG-H--EP-MFVMVMHDLEH 124 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS-S--SC-EEEEEEEEC--
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC-C--Cc-EEEEEEechhh
Confidence 234688889999999999999999975 2 33 36788888754
No 80
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.60 E-value=5.8e-16 Score=147.48 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=104.5
Q ss_pred HHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEE
Q 016148 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (394)
Q Consensus 243 ~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (394)
+...+++++++|+++|. +|+|+++|+++++++||+.++++|+.+....++++... ...+.+.+..+..+.+|++.+
T Consensus 520 ~~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~~ 595 (635)
T 4eho_A 520 ASSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLLR 595 (635)
T ss_dssp HHHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEEC
T ss_pred HHHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEEE
Confidence 34678999999999999 79999999999999999999999998877777766554 456677788888999999999
Q ss_pred ecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhh
Q 016148 323 RKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDR 362 (394)
Q Consensus 323 ~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e 362 (394)
++||+.+|+.+++.|++|.+|+++|++++++|||++|++|
T Consensus 596 ~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 596 GAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred ccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 9999999999999999999999999999999999999876
No 81
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.59 E-value=3.7e-14 Score=118.22 Aligned_cols=120 Identities=11% Similarity=0.180 Sum_probs=93.0
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHh------------cCCchhhcCCcccccccCCCchhHHHHHHHH
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 308 (394)
..+..++++++++|+++|. +|+|+|+|+++++++ ||++++++|+++..+.+. +.....+...
T Consensus 22 ~~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHHh
Confidence 3567789999999999999 899999999999999 899999999998766532 2222333332
Q ss_pred HhccCeeeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHH
Q 016148 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLS 373 (394)
Q Consensus 309 ~~~~~~~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~ 373 (394)
+. ..+..++. .+| .|+.++..|+.|.+|++.|++++++|||+++++|++++...+.+.
T Consensus 96 ~~--~~~~~~~~---~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~ 153 (233)
T 3vol_A 96 LT--GVHKAELN---LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA 153 (233)
T ss_dssp CC--SCEEEEEE---ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cc--cceeEEEE---ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh
Confidence 22 23444432 345 477999999999999999999999999999999998876655443
No 82
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.58 E-value=1.7e-14 Score=108.02 Aligned_cols=112 Identities=20% Similarity=0.132 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhh--cCCcccccccCCCchhHHHHHHHHHhccCe
Q 016148 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (394)
......++.+++++|++|+++|. +|+|+++|+++++++||+++++ +|+++..+.+ +.......+. ....+..
T Consensus 13 ~~~~~~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~-~~~~~~~ 86 (126)
T 3bwl_A 13 EETSSRLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLS-GFSVDER 86 (126)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHH-TCCTTCE
T ss_pred HHHHHHHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHH-HHhcCCC
Confidence 33445678899999999999999 7999999999999999999999 4666655544 2222222211 1223444
Q ss_pred eeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 315 ~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
..++.++.++||..+|+.++..++.+ +|.. +++++++|||
T Consensus 87 ~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 87 RKFEGLYERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred cceEEEEEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 56667778999999999988888743 4544 5788999998
No 83
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.58 E-value=3.8e-14 Score=109.55 Aligned_cols=107 Identities=34% Similarity=0.686 Sum_probs=92.0
Q ss_pred HhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCC-----------chhHHHHHHHHHhccCee
Q 016148 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQIKESIQTEQAC 315 (394)
Q Consensus 247 ~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~ 315 (394)
+++ +++++++|...++|+|+++|+++++++||++++++|+++..+.+++. .......+...+..+..+
T Consensus 32 ~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (149)
T 3d72_A 32 VDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEV 110 (149)
T ss_dssp CCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCE
T ss_pred hcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCce
Confidence 344 48999999321279999999999999999999999999888877764 566667777888888889
Q ss_pred eEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEee
Q 016148 316 TVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTE 354 (394)
Q Consensus 316 ~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~D 354 (394)
..+++..+++|..+|+.++..|+.+.+|.+.+++++++|
T Consensus 111 ~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 111 QVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 999999999999999999999999999999999999887
No 84
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.58 E-value=1.5e-14 Score=108.59 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=83.9
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhcc-------C
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-------Q 313 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-------~ 313 (394)
+.+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++.+.......+......+ .
T Consensus 7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 3577889999999999999 79999999999999999999999999988887766543222222111111 1
Q ss_pred eeeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecch
Q 016148 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGC 357 (394)
Q Consensus 314 ~~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~ 357 (394)
.+..++..+++||+.+|++++++|+. ++... ++++++|...
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~--~~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIP--GHEPM-FVMVMHDLEH 124 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEC--SSSCE-EEEEEEEC--
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEec--CCCcE-EEEEEechhh
Confidence 34578888999999999999999998 33333 7888898753
No 85
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.58 E-value=2.3e-15 Score=112.57 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
..++|+.+++++|++++++|.+ |+|+++|+++++++||++++++|+++..+++++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 6678999999999999999999 9999999999999999999999999887773322222222234455555433
Q ss_pred EeeEecCCC-eEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 96 ~~~~~~dG~-~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
..++|. .+|+.++..|+.+ +|.+.|++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 234555 7899999999887 477789999999998
No 86
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.56 E-value=9.7e-15 Score=106.34 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEec
Q 016148 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (394)
Q Consensus 22 ~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (394)
.++++++++|+++|.+ |+|+|+|+++.+++||+++|++|+++.+++||++.......+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 5789999999999988 9999999999999999999999999988999988766543331 233345678889999
Q ss_pred CCCeEEEEEEEEeeeccCCC
Q 016148 102 DGTPFWMLFKMSLVFGKEDG 121 (394)
Q Consensus 102 dG~~~~v~~~~~~i~~~~~g 121 (394)
||+.+|++.+++++++ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999988 443
No 87
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.56 E-value=2.4e-14 Score=112.71 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC----
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---- 91 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 91 (394)
....+..++++++++++++|.+ |+|+++|+++++++||+.++++|+++..++++.........+......+..
T Consensus 38 ~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (167)
T 1v9y_A 38 ADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEG 114 (167)
T ss_dssp --CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC--------
T ss_pred hhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccc
Confidence 4456899999999999999998 999999999999999999999999988887766555555555555544433
Q ss_pred eeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 92 ~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
+..+....+++|..+|+.++..|+. .+|.+. ++++++|||+++++
T Consensus 115 ~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~-~~~~~~DiT~~~~~ 159 (167)
T 1v9y_A 115 MSRELQLEKKDGSKIWTRFALSKVS--AEGKVY-YLALVRDASVEMAQ 159 (167)
T ss_dssp --CEEEEECTTSCEEEEEEEEEEEE--ETTEEE-EEEEEEC-------
T ss_pred cceEEEEEcCCCcEEEEEEEEEEEe--cCCCEE-EEEEEecCcHHHHH
Confidence 4557778889999999999999994 477764 89999999999986
No 88
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.55 E-value=4.3e-15 Score=110.15 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
..+..+.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++..++++.........+..++..+.+...+
T Consensus 10 ~~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (118)
T 3fg8_A 10 HSSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTR 86 (118)
T ss_dssp ---CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEE
T ss_pred ccchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEE
Confidence 4455678999999999999999 9999999999999999999999999888877666666677788888888887764
Q ss_pred EeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 96 ~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
+.....+| .|+.++..|+.+ |++++++|||++
T Consensus 87 ~~~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 87 VDSLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp EECSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEEEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 33333355 588888888755 378899999985
No 89
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.55 E-value=9.5e-15 Score=130.87 Aligned_cols=108 Identities=8% Similarity=0.019 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC-eeEEEeeEecCCCeE
Q 016148 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPF 106 (394)
Q Consensus 28 ~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~ 106 (394)
...++..+.+ |+++|+|+++..++||+++|++|+++..++||++.......+...+..+.. ...+++++++||+++
T Consensus 278 ~~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 3456666777 999999999999999999999999999999999888877777777766554 567999999999999
Q ss_pred EEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 107 ~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
|++.+..+++++.+|++.+++|+.+|||++|+
T Consensus 355 Wv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999238999999999999999985
No 90
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.54 E-value=9.4e-15 Score=129.93 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=97.1
Q ss_pred CCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCeEE
Q 016148 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (394)
Q Consensus 28 ~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 107 (394)
...++..+.+ |+++|+|+++..++||+++|++|+++..++||++.......+...+..|..+..+++++++||..+|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3445556666 9999999999999999999999999999999998888888888888888878889999999999999
Q ss_pred EEEEEEeeeccC-CCeeeEEEEEeccccccccc
Q 016148 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 108 v~~~~~~i~~~~-~g~~~~~~~~~~DITe~k~~ 139 (394)
++.+..|+++ . +|++.+++|+.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999999 6 89999999999999999864
No 91
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.54 E-value=6.6e-14 Score=116.69 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhc------------CCCcchhcCCCCccccCCCCChhHHHHHH
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~------------G~~~~e~~g~~~~~~~~~~~~~~~~~~~~ 83 (394)
...++..++++++.+|+++|++ |+|+|+|+++++++ ||++++++|+++..+++. +.....+.
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 3467889999999999999999 99999999999998 899999999998777642 22222222
Q ss_pred HHHHhCCCeeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
..+. .++..++ ..+| .|+.++.+|+++ .+|++.|++++++|||+++++
T Consensus 94 ~~~~--~~~~~~~---~~~g--~~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAEL---NLGG--RRFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEE---EETT--EEEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEE---EECC--EEEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 2221 2333333 2355 477899999999 899999999999999999985
No 92
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.52 E-value=3.1e-14 Score=103.65 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
.++++++++|+++|. +|+|+|+|+++++++||++++++|+++..+.||++.+.....+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 357889999999998 79999999999999999999999999999999998776654432 233345678889999
Q ss_pred CCCeeEEEEEeeeeecCCC
Q 016148 325 DKSSFWNLLHISPIRNASG 343 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~g 343 (394)
||+.+|+..++.++.+..+
T Consensus 77 dG~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC-----
T ss_pred CCCEEEEEEEEEEEecccC
Confidence 9999999999999988654
No 93
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1.5e-13 Score=102.19 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcC------------CCcchhcCCCCccccCCCCChhHHHHHHH
Q 016148 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (394)
Q Consensus 17 ~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G------------~~~~e~~g~~~~~~~~~~~~~~~~~~~~~ 84 (394)
..+++.++++++++|+++|.+ |+|+|+|+++++++| |++++++|++...+++. +.....
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~--- 74 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRH--- 74 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHH---
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHH---
Confidence 357889999999999999999 999999999999996 89999999997776642 122222
Q ss_pred HHHhC-CCeeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 85 AIREE-RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 85 ~~~~~-~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
.+... .++..++. .+|. ++.++.+|+++ .+|++.|++++++|||++
T Consensus 75 ~~~~~~~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 75 LLANLTGVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HHHHCSSCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred HHhCcCCCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 22222 23333332 2453 56788999999 899999999999999974
No 94
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.50 E-value=2.9e-13 Score=104.25 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCCcEEEechh---hHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 18 ~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a---~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
+.|..++++++++|+++|.+ |+|+|+|++ +++++| ..++++|+++..++++. .......+...+..+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 56889999999999999999 999999999 999999 56789999987765422 22233556677777877666
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
++.....+ ...++.++..|+++ ++|++.|++.+++|||+.++.
T Consensus 94 ~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~l 136 (151)
T 2qkp_A 94 NMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGG
T ss_pred EEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhh
Confidence 55543332 23567888999999 899999999999999998875
No 95
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.50 E-value=1.5e-13 Score=105.91 Aligned_cols=120 Identities=10% Similarity=0.089 Sum_probs=93.9
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHH---HHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeE
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (394)
..+.+++++++++|+++|. +|+|+|+|++ +++++| ..++++|+++..+.++. .......+...+..|.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 4578899999999999999 7999999999 999999 56789999987765432 23334556667777777666
Q ss_pred EEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHH
Q 016148 318 RILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLS 366 (394)
Q Consensus 318 e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~ 366 (394)
++.... .+...++.++..|++|++|++.|++.+++|||+.++.+++.+
T Consensus 94 ~~~~~~-~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~ 141 (151)
T 2qkp_A 94 NMWFQS-ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFN 141 (151)
T ss_dssp EEEEEE-TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC--
T ss_pred EEEEec-CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhh
Confidence 655433 322356788999999999999999999999999998887644
No 96
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.50 E-value=7.3e-13 Score=98.44 Aligned_cols=105 Identities=12% Similarity=0.211 Sum_probs=78.8
Q ss_pred HHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhc------------CCchhhcCCcccccccCCCchhHHHHHHHH
Q 016148 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (394)
Q Consensus 241 ~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 308 (394)
..+..++++++++|+++|. +|+|+|+|+++++++| |++++++|+++..+.+. +.....+...
T Consensus 5 ~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~~ 78 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 78 (121)
T ss_dssp HHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHhC
Confidence 4578899999999999999 7999999999999996 88999999998766532 2222222222
Q ss_pred HhccCeeeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 309 ~~~~~~~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
.. ..+..++. .+|. ++.++.+|+.+.+|++.|++++++|||++
T Consensus 79 ~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 79 LT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 22 33444433 2443 56789999999999999999999999974
No 97
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.49 E-value=1e-13 Score=102.61 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=84.3
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
.+++++|++|+++|. +|+|+++|+++++++|+++++++|+++..++++.........+..++..+.+...++.....
T Consensus 16 ~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (118)
T 3fg8_A 16 NLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSLYS 92 (118)
T ss_dssp CSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECSSS
T ss_pred HHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEEEcC
Confidence 457899999999998 79999999999999999999999999988877666666677778888888887774433334
Q ss_pred CCCeeEEEEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 325 DKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
+| .|+.++..|+.+ +++++++|||++
T Consensus 93 ~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 93 PG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp TT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred CC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 55 678888888754 378889999985
No 98
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.46 E-value=1e-13 Score=103.45 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=75.6
Q ss_pred HHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEE
Q 016148 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (394)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (394)
...+..++++++++++++|. +|+|+++|+++++++|+++++++|+++..+.+++...............+...
T Consensus 18 ~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 90 (125)
T 3fc7_A 18 RKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT---- 90 (125)
T ss_dssp --------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----
T ss_pred HHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----
Confidence 34577889999999999999 79999999999999999999999999888773322222222224444455433
Q ss_pred EEEecCCC-eeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 320 LNYRKDKS-SFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 320 ~~~~~~G~-~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
..++|. .+|+.++..|+.+. |...+++++++|||
T Consensus 91 --~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 --RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp --EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred --EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 234455 78999999998765 66678999999998
No 99
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.45 E-value=6.5e-13 Score=97.60 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=83.4
Q ss_pred HHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCe-eEEEee
Q 016148 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (394)
Q Consensus 20 l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (394)
...++++++++++++|.+ |+|+++|+++++++|+++++++|+++..++++... ....+.+.+..+.+. ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 346999999999999999 99999999999999999999999997766543321 223445566666653 355555
Q ss_pred EecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 99 ~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78999999999999987 565 68899999985
No 100
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.43 E-value=9.8e-13 Score=96.63 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=82.1
Q ss_pred HHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCee-eEEEEEE
Q 016148 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC-TVRILNY 322 (394)
Q Consensus 244 ~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~ 322 (394)
..++++++++++++|. +|+|+++|+++++++|+++++++|+++..+.++... ....+...+..+.+. ..+..+.
T Consensus 10 ~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (115)
T 3b33_A 10 SAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV 84 (115)
T ss_dssp HHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEe
Confidence 4578999999999999 799999999999999999999999998766543221 123344455555553 4566655
Q ss_pred ecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 323 RKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 323 ~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 85 -~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 85 -VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp -ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred -cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 78999999999999998 776 68899999985
No 101
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.39 E-value=1.2e-11 Score=107.72 Aligned_cols=109 Identities=9% Similarity=0.030 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC-----eeEEEeeEec
Q 016148 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKK 101 (394)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~ 101 (394)
..+.++..+.+ |+++|+|+++..++||+++|++|+++..++||++.......+...+..|.. ...+++++++
T Consensus 153 ~~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~k 229 (339)
T 3rty_A 153 SPKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 229 (339)
T ss_dssp CCEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECT
T ss_pred CceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEcc
Confidence 35567778888 999999999999999999999999999999999988888788888877664 3568999999
Q ss_pred CCCeEEEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 102 dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
||.++|++.+.++++++.++++..++|+.+.|+....
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 9999999999999998446788889999999988765
No 102
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=99.05 E-value=5.7e-14 Score=121.32 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=82.1
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhc---CCchhhcCCcccccccCC---Cch--hHHHHHHHHHhc-cCeee
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGVD---TDT--TVLYQIKESIQT-EQACT 316 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 316 (394)
.++++++||+++|. +|+|+++|++++++|| ++ ++++|+++..+.... ... .+...+...+.+ +....
T Consensus 175 ~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 46788999999999 7999999999999985 44 688999987766432 100 112222223333 33333
Q ss_pred EEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHHHHHHHHHHH
Q 016148 317 VRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHGLSLEMRQLS 373 (394)
Q Consensus 317 ~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~L~~~~~~l~ 373 (394)
.++. .. ..++.++..|+.+ +|.+.|++.+++|||+.++.|++|+.....++
T Consensus 251 ~ei~---~~--~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~Ir 301 (305)
T 2ykf_A 251 MEVD---AG--GATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIR 301 (305)
Confidence 2221 12 3567788899986 58888999999999999999999876554443
No 103
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.36 E-value=7.7e-13 Score=97.11 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=76.0
Q ss_pred cccceEEEEcCCCCC-cCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHH-HHhc-cCe---eeEEEEEE
Q 016148 249 RIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE-SIQT-EQA---CTVRILNY 322 (394)
Q Consensus 249 ~~~~~i~~~d~~~~d-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~---~~~e~~~~ 322 (394)
+.+++|+++|. + |+|+++|+++++++||++++++|+++..+.++.+... ...+.. .... +.. ...++..+
T Consensus 6 ~~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T 1ll8_A 6 EFNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp TTTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred CCCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEE
Confidence 34579999998 7 9999999999999999999999999988877654332 222221 1111 111 13356678
Q ss_pred ecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 323 RKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 323 ~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
+++|+.+|+.++.+|+.+.++. +++++++|++
T Consensus 82 ~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred ecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 9999999999999999876543 5788899986
No 104
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.33 E-value=1.4e-12 Score=95.67 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=75.2
Q ss_pred hCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHH-HHHh-CCCe---eEEEeeEe
Q 016148 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (394)
Q Consensus 26 ~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (394)
+.+++|+++|.+ +|+|+++|+++++++||++++++|+++..++++..... ...+.. .... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 355799999974 28999999999999999999999999888887654332 222221 1111 1111 34566678
Q ss_pred cCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 101 ~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
+||+.+|+.++.+|+.+ .++ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999987 443 36788889876
No 105
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.33 E-value=1.3e-11 Score=109.74 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEE
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (394)
..+.+..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..++++. .......+...+.+|.+...+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 3457889999999999999999 999999999 9999 999999999988776543 233345566777777766555
Q ss_pred EeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccccccc
Q 016148 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (394)
Q Consensus 96 ~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~e 140 (394)
... ..+| +|+.++..|+++ .+|++.|++.+++|||+.++.|
T Consensus 311 ~~~-~~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 311 FWL-RLRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp EEE-EETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCC
T ss_pred EEE-eeCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHH
Confidence 544 3456 578889999999 8999999999999999998863
No 106
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.31 E-value=2.6e-12 Score=114.26 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=88.7
Q ss_pred HHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEE
Q 016148 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (394)
Q Consensus 243 ~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (394)
+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++ ..........+..+.+....
T Consensus 10 ~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 79 (349)
T 3a0r_A 10 SESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFLN---- 79 (349)
T ss_dssp CCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEEE----
T ss_pred HHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceeec----
Confidence 34568999999999999 799999999999999999999999998777333 22333444555555544332
Q ss_pred ecCCCeeEEEEEeeeeecCCCCE-EEEEEEEeecchhhhhhHHHHHH
Q 016148 323 RKDKSSFWNLLHISPIRNASGKI-AYFAAVHTEEGCRNQDRHGLSLE 368 (394)
Q Consensus 323 ~~~G~~~~~~~~~~~i~d~~g~~-~~~~~~~~DIT~~k~~e~~L~~~ 368 (394)
...+..+|+.++..|+.+.+|.. .+++++++|||++|++|+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~ 126 (349)
T 3a0r_A 80 FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR 126 (349)
T ss_dssp CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH
T ss_pred ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH
Confidence 22334568889999999888765 58999999999999998877643
No 107
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.29 E-value=1.3e-12 Score=96.06 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCC---CcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~---~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (394)
+..+.++.++++++++++++|.+ |+|+++|+++++++|| ++++++|+++..++++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 45567889999999999999999 9999999999999998 789999999777664421 3445555554
Q ss_pred eeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccc
Q 016148 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (394)
Q Consensus 92 ~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DIT 134 (394)
..... ...+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32211 23455 477788999987 788889999999998
No 108
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.27 E-value=2e-11 Score=108.55 Aligned_cols=117 Identities=10% Similarity=0.081 Sum_probs=94.8
Q ss_pred hHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEE
Q 016148 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (394)
....+..+++++++||+++|. +|+|+++|++ ++++ ++.++++|+++..++++. .......+...+..|.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 345688999999999999999 7999999999 9999 899999999988776543 333345566677777766555
Q ss_pred EEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchhhhhhHH
Q 016148 319 ILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCRNQDRHG 364 (394)
Q Consensus 319 ~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~k~~e~~ 364 (394)
.... .+| +++.++..|++|.+|++.|++.+++|||+.++.+++
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred EEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 5443 455 578899999999999999999999999999887654
No 109
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.26 E-value=1.2e-11 Score=99.82 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCC-C-e
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (394)
+....++.+++++++|++++|.+ |+|+++|+++++++|++.++++|+++..++++... ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 45668899999999999999999 99999999999999999999999998877655321 22344443 2 2
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCe----eeEEEEEecccccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~----~~~~~~~~~DITe~k~ 138 (394)
..++. .+|. ++.++..|+.+ .+|. +.|++++++|||+.++
T Consensus 147 ~~~~~---~~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVV---INGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEE---ETTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEE---ECCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 22222 2665 45567899977 5666 7888999999999864
No 110
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.24 E-value=9.7e-11 Score=81.98 Aligned_cols=95 Identities=7% Similarity=0.051 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCCCeE
Q 016148 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (394)
Q Consensus 27 ~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (394)
++++++++|.+ |+|+++|+++++++|+++++++|+++..+ +. .......+...+..+..+.. . ..+|..+
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFL--N--FYKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEE--E--EEEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEE--E--EEcCCcE
Confidence 47899999999 99999999999999999999999997766 32 23344455666666655432 2 2245557
Q ss_pred EEEEEEEeeeccCCCe-eeEEEEEecc
Q 016148 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (394)
Q Consensus 107 ~v~~~~~~i~~~~~g~-~~~~~~~~~D 132 (394)
|+.++..|+.+ .+|. +.|++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 99999999998 6554 6789998877
No 111
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.24 E-value=1.5e-10 Score=84.14 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred HHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCcc-ccCCCCChhHHHHHHHHHHhCCCeeEEEee-
Q 016148 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (394)
Q Consensus 21 ~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 98 (394)
..++++++.|++++|.+ |+|++||+++++++||++++++|+++.. +.+......+...+.+.+..|. ......+
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999765 4444566667788888888776 4444433
Q ss_pred EecCCCeEEEEEEEEeeeccCCCeeeEEE
Q 016148 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (394)
Q Consensus 99 ~~~dG~~~~v~~~~~~i~~~~~g~~~~~~ 127 (394)
.+++|.++++. +++..+ ++|...+++
T Consensus 96 ~~~~~~p~~v~--i~l~~~-~~~~~~~i~ 121 (125)
T 1nwz_A 96 FDYQMTPTKVK--VHMKKA-LSGDSYWVF 121 (125)
T ss_dssp ECTTSCCEEEE--EEEEEC-SSSSEEEEE
T ss_pred EcCCCCEEEEE--EEEEEc-CCCCEEEEE
Confidence 48899976665 555566 678777654
No 112
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.23 E-value=1.1e-10 Score=84.94 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred HHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCcc-ccCCCCChhHHHHHHHHHHhCCCeeEEEee-E
Q 016148 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN-Y 99 (394)
Q Consensus 22 ~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~ 99 (394)
.++++++.|++++|.+ |+|++||+++++++||++++++|+++.. +.+......+...+.+.+..|. ...+..+ .
T Consensus 26 ~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF 101 (129)
T ss_dssp TTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE
T ss_pred HHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 3599999999999999 9999999999999999999999999765 4444566667788888888666 4444433 4
Q ss_pred ecCCCeEEEEEEEEeeeccCCCeeeEEE
Q 016148 100 KKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (394)
Q Consensus 100 ~~dG~~~~v~~~~~~i~~~~~g~~~~~~ 127 (394)
+++|.++++. +++... .+|...+++
T Consensus 102 ~~~~~p~~v~--i~l~~~-~~~~~~~i~ 126 (129)
T 1mzu_A 102 DFQMAPVRVQ--IRMQNA-GVPDRYWIF 126 (129)
T ss_dssp ECSSCEEEEE--EEEEEC-SSTTEEEEE
T ss_pred cCCCCEEEEE--EEEEEc-CCCCEEEEE
Confidence 8899966665 555666 678777654
No 113
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.23 E-value=5.2e-12 Score=112.34 Aligned_cols=114 Identities=8% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 15 r~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
++.++++.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++ ......+...+..+.+...
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceee
Confidence 44557788999999999999999 99999999999999999999999997776322 2233444555666655433
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCee-eEEEEEeccccccccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHM 139 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~-~~~~~~~~DITe~k~~ 139 (394)
.. ..+..+|+.++..|+.+ .+|.. .|++++++|||+++++
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~ 119 (349)
T 3a0r_A 79 NF----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKY 119 (349)
T ss_dssp EC----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTT
T ss_pred cc----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHH
Confidence 22 22344588889999998 66665 5899999999999987
No 114
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.22 E-value=1e-10 Score=100.74 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=90.5
Q ss_pred CeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC---eeEEEeeEecCCCe
Q 016148 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (394)
Q Consensus 29 ~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~ 105 (394)
..+...+.+ |+++|+|+++..++||.++|++|+++..++||++.....+.+.+.+..+.. ...+++++++||.+
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 445556666 999999999999999999999999999999999998888888888887654 35789999999999
Q ss_pred EEEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 106 ~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
+|++...+++.+..++++..++++.+-++....
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 999999999998446778888888776666544
No 115
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.22 E-value=2.1e-10 Score=80.17 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=72.2
Q ss_pred ccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCee
Q 016148 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (394)
Q Consensus 250 ~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~ 329 (394)
++++|+++|. +|+|+++|+++++++|++.++++|+++..+ +. .......+...+..+..+... ..+|..+
T Consensus 1 ~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN----FYKFGER 70 (96)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE----EEEETTE
T ss_pred CCceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE----EEcCCcE
Confidence 3689999999 799999999999999999999999998776 32 233444555556656555322 2245567
Q ss_pred EEEEEeeeeecCCCC-EEEEEEEEee
Q 016148 330 WNLLHISPIRNASGK-IAYFAAVHTE 354 (394)
Q Consensus 330 ~~~~~~~~i~d~~g~-~~~~~~~~~D 354 (394)
|+.++..|+.+.+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 999999999988665 6788988877
No 116
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.17 E-value=8e-12 Score=91.83 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=78.5
Q ss_pred hHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcC---CchhhcCCcccccccCCCchhHHHHHHHHHhccCee
Q 016148 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
....+..++++++++++++|. +|+|+++|+++++++|| +.++++|+++..+.++.. +...+..+...
T Consensus 13 ~~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 82 (118)
T 2w0n_A 13 LFEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPR 82 (118)
T ss_dssp THHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCC
T ss_pred HHHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCcee
Confidence 344577889999999999999 79999999999999998 789999999877665421 33444444443
Q ss_pred eEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 316 TVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 316 ~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
.... ...+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 83 ~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 83 RDEE--ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC--EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ccEE--EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 2211 12345 577888899987 788888999999998
No 117
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.16 E-value=7.3e-10 Score=80.51 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=75.9
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccc-cCCCchhHHHHHHHHHhccCeeeEEEEEE-
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN-GVDTDTTVLYQIKESIQTEQACTVRILNY- 322 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~- 322 (394)
..+++++.|++++|. +|+|+++|++++++.||++++++|+++.... +....+.+...+.+.+..|. +..+..+.
T Consensus 21 ~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v~ 96 (125)
T 1nwz_A 21 GQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYTF 96 (125)
T ss_dssp HHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEEE
T ss_pred HHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 358999999999999 8999999999999999999999999986643 44555666677777777665 55555444
Q ss_pred ecCCCeeEEEEEeeeeecCCCCEEEEE
Q 016148 323 RKDKSSFWNLLHISPIRNASGKIAYFA 349 (394)
Q Consensus 323 ~~~G~~~~~~~~~~~i~d~~g~~~~~~ 349 (394)
+.+|.+.+ ++.++..+.+|...+++
T Consensus 97 ~~~~~p~~--v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 97 DYQMTPTK--VKVHMKKALSGDSYWVF 121 (125)
T ss_dssp CTTSCCEE--EEEEEEECSSSSEEEEE
T ss_pred cCCCCEEE--EEEEEEEcCCCCEEEEE
Confidence 88898554 55556667788776543
No 118
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.15 E-value=2.8e-10 Score=97.80 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCC-ee-EEEeeEecCCCeEE
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dG~~~~ 107 (394)
.+...+.+ |+++|+|+++..++||.++|++|+++..++||++.....+.+.+.+..+.. .. .+++++++||.++|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45566666 999999999999999999999999999999999988877777788875543 54 58999999999999
Q ss_pred EEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 108 v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
++...+++.+..++++..++|+.+-++....
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~~ 274 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCCC
Confidence 9999999988347888899999988887654
No 119
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.14 E-value=1.7e-10 Score=99.62 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=90.1
Q ss_pred CeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHh-CCCe-eEEEeeEecCCCeE
Q 016148 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE-ERPI-EVNLLNYKKDGTPF 106 (394)
Q Consensus 29 ~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~~dG~~~ 106 (394)
..+...+.+ |+++|+|+++..++||.++|++|+++..++||++.....+.+.+.+.. +... ..+++++++||.++
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345566666 999999999999999999999999999999999988777777777764 4445 46899999999999
Q ss_pred EEEEEEEeeeccCCCeeeEEEEEecccccccc
Q 016148 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (394)
Q Consensus 107 ~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~ 138 (394)
|++...+++.+..++++..++|+.+-++....
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 99999999988447888899999888887654
No 120
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.13 E-value=1e-09 Score=79.82 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=75.1
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccc-cCCCchhHHHHHHHHHhccCeeeEEEEEE-e
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLN-GVDTDTTVLYQIKESIQTEQACTVRILNY-R 323 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~ 323 (394)
.+++++.|++++|. +|+|+++|.+++++.||++++++|+++.... +......+...+.+.+..|. +..++.+. +
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~~ 102 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVFD 102 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEEE
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEc
Confidence 47899999999999 8999999999999999999999999986643 33455566677777777665 55555444 8
Q ss_pred cCCCeeEEEEEeeeeecCCCCEEEEE
Q 016148 324 KDKSSFWNLLHISPIRNASGKIAYFA 349 (394)
Q Consensus 324 ~~G~~~~~~~~~~~i~d~~g~~~~~~ 349 (394)
.+|.+. .++.++..+.+|...+++
T Consensus 103 ~~~~p~--~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 103 FQMAPV--RVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp CSSCEE--EEEEEEEECSSTTEEEEE
T ss_pred CCCCEE--EEEEEEEEcCCCCEEEEE
Confidence 888855 555566667788776543
No 121
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.13 E-value=1e-10 Score=94.26 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=80.4
Q ss_pred hhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccC--ee
Q 016148 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ--AC 315 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 315 (394)
.....+..+++++++|++++|. +|+|+++|+++++++|++.++++|+++..+.++... ...+..+. ..
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 3445688899999999999999 799999999999999999999999998877665422 12333333 23
Q ss_pred eEEEEEEecCCCeeEEEEEeeeeecCCCC----EEEEEEEEeecchhhh
Q 016148 316 TVRILNYRKDKSSFWNLLHISPIRNASGK----IAYFAAVHTEEGCRNQ 360 (394)
Q Consensus 316 ~~e~~~~~~~G~~~~~~~~~~~i~d~~g~----~~~~~~~~~DIT~~k~ 360 (394)
..++.. +|. ++.++..|+.+.+|. +.|++++++|||++++
T Consensus 147 ~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhcC
Confidence 333322 664 466788999875665 7788889999999863
No 122
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.05 E-value=4.2e-09 Score=90.84 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=74.1
Q ss_pred HHhhCCCeEEEEcCCCCCCcEEEechhhHHhcC---CCcchhcCCCCccccCCC---CCh--hHHHHHHHHHHh-CCCee
Q 016148 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (394)
Q Consensus 23 l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G---~~~~e~~g~~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (394)
+++++++||+++|.+ |+|+++|+++++++| ++ ++++|+++..+++.. ... .+...+...+.+ +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 345899999999999 999999999999985 54 788999987776432 100 112222223433 33332
Q ss_pred EEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccccc
Q 016148 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (394)
Q Consensus 94 ~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k~~ 139 (394)
.+.. .+ ..++.++..|+.+ +|.+.|++.+++|||+.++.
T Consensus 251 ~ei~---~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~l 289 (305)
T 2ykf_A 251 MEVD---AG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRR 289 (305)
Confidence 2221 12 3567788899987 68889999999999999986
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.36 E-value=1.3e-06 Score=63.09 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=80.9
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCc--chhcCCCCccccCCCCCh--hHHHHHHHHHHhCCCeeEEEeeEecCCCe
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~--~e~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (394)
.+.-.|.+ |+|+++.....+ .+|.+ +|++|+.+-+++|+.+.. ...+...+++..|.....-++++.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 34455666 999999998874 77777 899999999999999855 77788888888887777888999999999
Q ss_pred EEEEEEEEeeeccCCCeeeEEEEEeccccccc
Q 016148 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 106 ~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
+|+......+++.-.+++..++++..=+.+..
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~~ 116 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDREHS 116 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEECC--
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEcCCC
Confidence 99999999888844567777777766555443
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.32 E-value=2.2e-06 Score=61.81 Aligned_cols=100 Identities=7% Similarity=-0.016 Sum_probs=79.0
Q ss_pred EEEEcCCCCCcCEEEeCHHHHHHhcCCc--hhhcCCcccccccCCCch--hHHHHHHHHHhccCeeeEEEEEEecCCCee
Q 016148 254 FVLIDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (394)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~ 329 (394)
+.-.|. ||+|+++.....+ .+|.+ +|++|+.+.+++|++|.. .+.+...+++..|......+|++.++|.++
T Consensus 10 ~sRh~~---dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDT---TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECT---TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecC---CCcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 334455 8999999998874 67777 999999999999999965 788888888888888888999999999999
Q ss_pred EEEEEeeeeecC-CCCEEEEEEEEeecch
Q 016148 330 WNLLHISPIRNA-SGKIAYFAAVHTEEGC 357 (394)
Q Consensus 330 ~~~~~~~~i~d~-~g~~~~~~~~~~DIT~ 357 (394)
|+......+.+. .+++-+++++-.=+.+
T Consensus 86 ~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 86 SAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 999999888875 3455566665544433
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.97 E-value=0.031 Score=48.25 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=34.9
Q ss_pred EEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCC
Q 016148 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74 (394)
Q Consensus 31 i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~ 74 (394)
+++++.+ +++|+.+|..+.+++|+++++++|+++..+++++.
T Consensus 45 Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~ 86 (337)
T 2ool_A 45 LFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAAS 86 (337)
T ss_dssp EEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHH
T ss_pred EEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHH
Confidence 3455643 48999999999999999999999999888887643
No 126
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.77 E-value=0.11 Score=44.77 Aligned_cols=75 Identities=9% Similarity=0.166 Sum_probs=47.8
Q ss_pred EEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccC---eeeEEEEEEec-CCCee
Q 016148 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ---ACTVRILNYRK-DKSSF 329 (394)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~-~G~~~ 329 (394)
+++++.. +++|+.+|..+.+++|+++++++|+++..++++.... .+...+..+. ...+.++.... +|..+
T Consensus 45 Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~----~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f 118 (337)
T 2ool_A 45 LFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAA----RLTHALHGGDPAAINPIRLDVVTPDGERAF 118 (337)
T ss_dssp EEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHH----HHHHHHCC----CCCSEEEEEEETTEEEEE
T ss_pred EEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHH----HHHHHHhcCCccccCcEEEEEeccCCCeEE
Confidence 3456653 6899999999999999999999999998888764333 3444443322 12334444333 34555
Q ss_pred EEEEE
Q 016148 330 WNLLH 334 (394)
Q Consensus 330 ~~~~~ 334 (394)
|+.+.
T Consensus 119 ~~~~H 123 (337)
T 2ool_A 119 NGILH 123 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 127
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=90.64 E-value=2.6 Score=33.45 Aligned_cols=97 Identities=9% Similarity=0.085 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhCCC--eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCe
Q 016148 15 RYTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (394)
Q Consensus 15 r~~~~l~~l~~~~~~--~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
.....|..+....+. .++++|.+ |+++..+.. ...+.. ..+. ..+..++..++++
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~r----~~f~~a~~~~~~~ 111 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LADR----SFFIKAKETKKTV 111 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTTS----HHHHHHHHHCSCE
T ss_pred HHHHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cchh----HHHHHHHhcCCcE
Confidence 345567777776665 58889998 888876531 001111 1111 2334455556654
Q ss_pred eEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccccc
Q 016148 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 93 ~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
-.+...-...|. ++-....|+++ .+|++.|+++...++....
T Consensus 112 is~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~ 153 (217)
T 4dah_A 112 ISDSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLK 153 (217)
T ss_dssp ECCCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHH
T ss_pred EeceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHH
Confidence 433322234555 55566889998 8999999999877776543
No 128
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=88.81 E-value=4.6 Score=31.79 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred HhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCC
Q 016148 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (394)
Q Consensus 24 ~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 103 (394)
.+++|+.-++.+.+ + ++|-++-..++|.+...+ ..+.+.+..+..|.... ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 56789989999877 4 456667777888776443 34445555555565432 34577
Q ss_pred CeEEEEEEEEeeeccCCCeeeEEEEEeccc
Q 016148 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133 (394)
Q Consensus 104 ~~~~v~~~~~~i~~~~~g~~~~~~~~~~DI 133 (394)
..+++.++-+|+.+...|++.|++.++.-.
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVL 142 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVL 142 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEe
Confidence 888899999999987899999998766543
No 129
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=86.17 E-value=8.9 Score=30.25 Aligned_cols=96 Identities=5% Similarity=0.017 Sum_probs=56.0
Q ss_pred hhHHHHHHHHhcccc--eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCee
Q 016148 238 FISSSLYISLGRIKQ--SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~--~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
.+...|.......+. .++++|. +|+++..++. ...+ ..+.+.+ .+..++..+.++
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~---~G~~~~~~~~----------~~~~------~~~~~r~----~f~~a~~~~~~~ 111 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNA---KGDVTASTTE----------LKTK------VNLADRS----FFIKAKETKKTV 111 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEET---TCBEEEESSC----------CSSC------CBCTTSH----HHHHHHHHCSCE
T ss_pred HHHHHHHHHHhcCCcccEEEEECC---CCcEEEecCC----------CCCC------CCcchhH----HHHHHHhcCCcE
Confidence 344455566655544 6888998 7998876530 0011 1122222 233444545554
Q ss_pred eEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 316 TVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 316 ~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
-.+...-...|. ++...+.|+.+.+|++.|+++...++...
T Consensus 112 is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l 152 (217)
T 4dah_A 112 ISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYL 152 (217)
T ss_dssp ECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHH
Confidence 333332234454 66778899999899999999987776543
No 130
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=85.93 E-value=7.8 Score=27.85 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCC-CeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 16 YTLWVHEALDELP-DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 16 ~~~~l~~l~~~~~-~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
.+..++.+-+... +.++++|.+ |..+.... .+.+|+++.. .+ .+..++. |+.+..
T Consensus 37 l~~~~~~~~~~~~~~~i~v~d~~---G~~~a~~~----------~~~iG~~~~~--~~--------~~~~al~-G~~~~~ 92 (131)
T 1p0z_A 37 IKALIDPMRSFSDATYITVGDAS---GQRLYHVN----------PDEIGKSMEG--GD--------SDEALIN-AKSYVS 92 (131)
T ss_dssp HHHHHHHHHHHSCCSEEEEEETT---SBEEECSS----------GGGTTSBCCS--SC--------CHHHHHH-CCCEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC---CcEEEecC----------hhhCCCcccC--CC--------cHHHHhC-CCeEEE
Confidence 3444454444433 578889998 76665432 2336665321 11 1223343 444332
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
. . .|...+.-....|+++ ++|+++|++++..++...
T Consensus 93 ~---~--~g~~g~~~~~~~PV~~-~~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 93 V---R--KGSLGSSLRGKSPIQD-ATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp E---E--EETTEEEEEEEEEEEC-TTCCEEEEEEEEEEGGGC
T ss_pred E---E--EccceeeEEEEEeEEC-CCCCEEEEEEEEEEhHHh
Confidence 1 1 2222222333569998 789999999998877643
No 131
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=85.14 E-value=4.8 Score=32.82 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=59.5
Q ss_pred HhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeEEEeeEecCC
Q 016148 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (394)
Q Consensus 24 ~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 103 (394)
.+++|+.-++.+.+ | +.|-++-..++|.+...+ ..+.+.+..+..|.... .+..+
T Consensus 77 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---N--ILWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---E--EEEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---c--eEEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 46688888888876 3 445556667777765432 44455555555565432 35677
Q ss_pred CeEEEEEEEEeeeccCCCeeeEEEEEeccccc
Q 016148 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (394)
Q Consensus 104 ~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe 135 (394)
..+++.++-+|+.+...|++.|++.++.....
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnn 163 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLND 163 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 88889999999999788999999877665443
No 132
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=83.91 E-value=7.7 Score=27.90 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=44.8
Q ss_pred ceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCeeEE
Q 016148 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWN 331 (394)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~ 331 (394)
+.++++|. +|..++... ...+|+++.. .+ . +..++ .|..+.... .|...+.
T Consensus 51 ~~i~v~d~---~G~~~a~~~----------~~~iG~~~~~--~~----~----~~~al-~G~~~~~~~-----~g~~g~~ 101 (131)
T 1p0z_A 51 TYITVGDA---SGQRLYHVN----------PDEIGKSMEG--GD----S----DEALI-NAKSYVSVR-----KGSLGSS 101 (131)
T ss_dssp SEEEEEET---TSBEEECSS----------GGGTTSBCCS--SC----C----HHHHH-HCCCEEEEE-----EETTEEE
T ss_pred CEEEEEcC---CCcEEEecC----------hhhCCCcccC--CC----c----HHHHh-CCCeEEEEE-----Eccceee
Confidence 47888998 687776542 2346765321 11 1 22333 344443321 2222233
Q ss_pred EEEeeeeecCCCCEEEEEEEEeecch
Q 016148 332 LLHISPIRNASGKIAYFAAVHTEEGC 357 (394)
Q Consensus 332 ~~~~~~i~d~~g~~~~~~~~~~DIT~ 357 (394)
.....|+.+++|+++|++++..++..
T Consensus 102 ~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 102 LRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 34455999888999999999888764
No 133
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=83.32 E-value=4.1 Score=34.82 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=39.7
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhC
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (394)
.++++|.+ ++|+.++..+.+++|.++++++|++...++.+. ....+...+...
T Consensus 31 ~Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~----~~~~l~~~l~~~ 83 (327)
T 4e04_A 31 LLLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDSE----THNRLTIALAEP 83 (327)
T ss_dssp EEEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH----HHHHHHHHHHSC
T ss_pred EEEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH----HHHHHHHHhhcc
Confidence 35667744 999999999999999999999999987776532 334455555443
No 134
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=82.95 E-value=20 Score=30.23 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhC-CCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHhCCCeeE
Q 016148 16 YTLWVHEALDEL-PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (394)
Q Consensus 16 ~~~~l~~l~~~~-~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (394)
....|..+.... -..++++|.+ |+++..+... .+..++|.+. . ....+.+++.++....
T Consensus 100 l~~~L~~~~~~~~~~~i~v~d~~---G~viass~~~------~p~~~~g~d~------~----~R~yf~~Al~g~~~~~- 159 (305)
T 3e4o_A 100 INRKLEALATSAEAAVIYLIDRS---GVAVAASNWQ------EPTSFVGNDY------A----FRDYFRLAVRDGMAEH- 159 (305)
T ss_dssp HHHHHHHHHHHSSCSEEEEEETT---SBEEEETTTT------STTCCTTCBC------T----TSHHHHHHHHHSEEEE-
T ss_pred HHHHHHHHHhccCccEEEEECCC---CCEEEeCCCc------CcccccCCCc------c----ccHHHHHHHhcCCcEE-
Confidence 334455544433 3568999999 8888765320 1112233221 1 1233445555543322
Q ss_pred EEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEecccccc
Q 016148 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (394)
Q Consensus 95 e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~ 136 (394)
+..-...|. ++-....|+++ +|+++|++++..|+...
T Consensus 160 -~~~~~~tg~--~~i~~a~PV~~--~G~viGVv~v~i~l~~l 196 (305)
T 3e4o_A 160 -FAMGTVSKR--PGLYISRRVDG--PGGPLGVIVAKLEFDGV 196 (305)
T ss_dssp -EEECTTTCC--EEEEEEEEEEE--TTEEEEEEEEEECCHHH
T ss_pred -EEEecCCCC--EEEEEEEEEcc--CCeEEEEEEEEEcHHHH
Confidence 222223444 34456889988 69999999998887643
No 135
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=81.17 E-value=10 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=34.1
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchhcC
Q 016148 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG 63 (394)
Q Consensus 19 ~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g 63 (394)
..+.+..++|.++++-+.. ..|+|+|.+|.+||-.+..-+-|
T Consensus 21 ~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked~~~sg 62 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKEDQPLSG 62 (127)
T ss_dssp HHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCCCGGGC
T ss_pred hHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcccCcccC
Confidence 4578999999999999998 89999999999996554433333
No 136
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=77.73 E-value=24 Score=28.42 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhCCC--eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHH--hCCC
Q 016148 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (394)
Q Consensus 16 ~~~~l~~l~~~~~~--~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 91 (394)
....|..+....|. .++++|.+ |+ +..+.. ... .+.+ +.+ ...+..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~~---~~~~------~~~----r~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KPV---PALD------NSD----RSYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SSE---ECCB------CTT----SHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CCC---CCCC------ccc----HHHHHHHHhCCCCCe
Confidence 45567777777775 58899998 88 443221 000 1111 111 123444554 3444
Q ss_pred eeEEEeeEecCCCeEEEEEEEEeeeccCCCeeeEEEEEeccccc
Q 016148 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (394)
Q Consensus 92 ~~~e~~~~~~dG~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe 135 (394)
+-.+...-...|. |+-....|+++ .+|++.|++++..++..
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~ 153 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEY 153 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHH
Confidence 4333322223454 55566889998 89999999998777654
No 137
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=72.79 E-value=19 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.6
Q ss_pred HHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcC
Q 016148 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279 (394)
Q Consensus 243 ~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~ 279 (394)
...+..++|.++++-+. ..+|+|.|.+|.++|--
T Consensus 22 iq~iY~nSPVpVCVRNq---~RkilYaN~aF~elF~K 55 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQ---SRKIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHTTCSSCEEEECT---TSCEEEECHHHHHHTTS
T ss_pred HHhhhcCCCccEEEecc---cceEEEecchHHHHhhc
Confidence 34567889999999998 57999999999999643
No 138
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=72.33 E-value=2.1 Score=36.80 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=34.5
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCC
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~ 72 (394)
.+++++.+ +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 54 ~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 54 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 34566653 399999999999999999999999998887765
No 139
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=69.26 E-value=23 Score=30.17 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=33.8
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccC
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 295 (394)
.++++|. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 31 ~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~ 70 (327)
T 4e04_A 31 LLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDS 70 (327)
T ss_dssp EEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH
T ss_pred EEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCH
Confidence 3455663 799999999999999999999999998877654
No 140
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=68.87 E-value=23 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=20.4
Q ss_pred EEeeeccCCCeeeEEEEEeccccccc
Q 016148 112 MSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 112 ~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
..|+++ ++|+++|++++..++....
T Consensus 110 ~~PV~~-~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 110 FTPIYD-ENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp EEEEEC-TTSCEEEEEEEEEEHHHHH
T ss_pred EEeEEc-CCCCEEEEEEEeEEHHHHH
Confidence 559998 7899999999988876543
No 141
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=67.21 E-value=4.3 Score=34.85 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccC
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 295 (394)
.+++++.. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 54 ~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 54 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 34556653 789999999999999999999999998887765
No 142
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=65.75 E-value=48 Score=26.15 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=58.6
Q ss_pred HHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecC
Q 016148 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (394)
Q Consensus 246 ~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 325 (394)
..+++||--++.+. ++ ++ |-.+-...+|.++.. ...+.+....+..|...- ....
T Consensus 57 ~p~~~pDfRFI~~~---~~-~~-WdDgNa~FyGi~~~~------------------L~~L~~~v~~~~~Wh~~~--~~s~ 111 (221)
T 2hje_A 57 DPSHTPEFRFLTDH---KG-II-WDDGNAHFYGVNDLI------------------LDSLANRVSFSNNWYYIN--VMTS 111 (221)
T ss_dssp SGGGCCSEEEEECS---SS-EE-EECSGGGGGTCCHHH------------------HHHHHHHCCSSSSCEEEE--EEET
T ss_pred CcCCCCcEEEEEeC---Cc-eE-EECCCccccccCHHH------------------HHHHHhhhcccCceEEEE--eccC
Confidence 35678998888887 33 33 333344556655433 344555555666676543 3567
Q ss_pred CCeeEEEEEeeeeecC-CCCEEEEEEEEeecchhh
Q 016148 326 KSSFWNLLHISPIRNA-SGKIAYFAAVHTEEGCRN 359 (394)
Q Consensus 326 G~~~~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k 359 (394)
+..+++.++.+|+.+. .|+++|++.++.-....-
T Consensus 112 ~g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNf 146 (221)
T 2hje_A 112 IGSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNF 146 (221)
T ss_dssp TEEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCH
T ss_pred CCceEEEEEccceecCCCCcEEEEEEEEEEecCcH
Confidence 7888999999999985 699999877766554443
No 143
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=65.33 E-value=45 Score=27.22 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=59.3
Q ss_pred HHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEec
Q 016148 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (394)
Q Consensus 245 ~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (394)
...+++||--++.+. +| ++ |-++-...+|.++.. ...+.+....+..|...- .+.
T Consensus 75 ~~p~~~pDfRFI~~~---~~-~~-WdDgNa~FyGi~~~~------------------L~~L~~~v~~~~~Wh~~~--~~s 129 (270)
T 3c38_A 75 LELSNAPDLRFISSH---DN-IL-WDDGNASFYGIAQQE------------------LNKLIRRVAISGNWHLVQ--TPS 129 (270)
T ss_dssp TTGGGCCSEEEEEET---TE-EE-EECSCGGGGTCCHHH------------------HHHHHHHSCSSSSCEEEE--ECC
T ss_pred cCccCCCcEEEEEeC---Cc-eE-EECCCCceeCCCHHH------------------HHHHHhhcccCCceEEEE--ecc
Confidence 345678888888887 33 33 333333445544433 245555556666776542 356
Q ss_pred CCCeeEEEEEeeeeecC-CCCEEEEEEEEeecchhhhh
Q 016148 325 DKSSFWNLLHISPIRNA-SGKIAYFAAVHTEEGCRNQD 361 (394)
Q Consensus 325 ~G~~~~~~~~~~~i~d~-~g~~~~~~~~~~DIT~~k~~ 361 (394)
.+..+++.++.+|+.+. .|++.|++.++......--.
T Consensus 130 ~~g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNfsl 167 (270)
T 3c38_A 130 EGKSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFAL 167 (270)
T ss_dssp SSSCEEEEEEEEEECCCC-CCCCEEEEEEEECTTCHHH
T ss_pred CCCceEEEEEccceecCCCCcEEEEEEEEEEecCcHHH
Confidence 78888999999999986 59999998877766554433
No 144
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=63.83 E-value=58 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcCCCcchh
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~ 61 (394)
...............++++|-.. +.+.+++..+..++||+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~l~D~~~--~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 31 HQQFVRSLTEVNGGCAVISDLSN--RKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHHHHHHHHSSEEEEEETTT--TEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEcCC--CeEEEEeCCHHHHhCCCcccc
Confidence 33444455555677799999663 899999999999999999877
No 145
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=62.92 E-value=41 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhh
Q 016148 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (394)
Q Consensus 251 ~~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~ 284 (394)
...++++|.. ++.+.+++..+..++||+++++
T Consensus 43 ~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 4568889976 6999999999999999999877
No 146
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=61.72 E-value=16 Score=30.72 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCcEEEechhhHHhcC
Q 016148 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (394)
Q Consensus 16 ~~~~l~~l~~~~~~~i~~~d~~~~d~~i~~~N~a~~~~~G 55 (394)
...-++.+++..+.+.+++|.. +.|+.+|+++..+++
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 4456788999998899999999 999999999999995
No 147
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=52.85 E-value=5.5 Score=36.56 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCccccCCC
Q 016148 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (394)
Q Consensus 30 ~i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~ 73 (394)
.+++++.. +++|+.++..+.+++|.++++++|+++..++.+.
T Consensus 31 ~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 31 LVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 35566653 3999999999999999999999999987776554
No 148
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=52.82 E-value=42 Score=30.67 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=36.1
Q ss_pred EEEEcCCCCCCcEEEechhhHHhcCCCcchhcCCCCcc-ccCCCCChhHHHHHHHHHHh
Q 016148 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIRE 88 (394)
Q Consensus 31 i~~~d~~~~d~~i~~~N~a~~~~~G~~~~e~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (394)
+++++.+ ++|+.++..+.+++|.++ ++|+++.. ++.+ .....+...+..
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~----~~~~~l~~~l~~ 78 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVGP----EVLRMLEEGLTG 78 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH----HHHHHHHHHHSC
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCCH----HHHHHHHHHhhc
Confidence 4566765 999999999999999988 99999877 6643 233444455443
No 149
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=51.47 E-value=91 Score=24.86 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=31.2
Q ss_pred HHHHHh--ccCeeeEEEEEEecCCCeeEEEEEeeeeecCCCCEEEEEEEEeecc
Q 016148 305 IKESIQ--TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKIAYFAAVHTEEG 356 (394)
Q Consensus 305 ~~~~~~--~~~~~~~e~~~~~~~G~~~~~~~~~~~i~d~~g~~~~~~~~~~DIT 356 (394)
+..++. .+..+-.+...-...| .|+.....|+.+.+|++.|++++..|+.
T Consensus 101 f~~a~~~~~~~~~is~p~~~~~~g--~~~i~~~~pi~~~~g~~~Gvl~~~i~l~ 152 (254)
T 3lif_A 101 FRYHRANDDHTLLITGPIQSRTSG--VWVFVVSRRLETTDGKFFGVVVATIESE 152 (254)
T ss_dssp HHHHHHCCCCCCEEEEEEECTTTC--CEEEEEEEEEECTTCCEEEEEEEEECHH
T ss_pred HHHHHhCCCCCeEECCceecCCCC--cEEEEEEeeeeCCCCCEeEEEEEEECHH
Confidence 334444 3444444433222344 4666778999998999999988877754
No 150
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=48.57 E-value=64 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=22.3
Q ss_pred CCCeEEEEEEEEeeeccCC-CeeeEEEEEeccccc
Q 016148 102 DGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVS 135 (394)
Q Consensus 102 dG~~~~v~~~~~~i~~~~~-g~~~~~~~~~~DITe 135 (394)
.|. ++-....|+.+ .+ |++.|++++..+...
T Consensus 115 ~~~--~~i~~~~pi~~-~~~g~~~Gvl~~~i~~~~ 146 (240)
T 3c8c_A 115 SGE--ILVSVATPVKD-SATGQFLGSIFYDVSLAE 146 (240)
T ss_dssp TCC--EEEEEEEEEEC-TTTCCEEEEEEEEECHHH
T ss_pred CCe--EEEEEEEEEEE-CCCCeEEEEEEEEEEHHH
Confidence 444 45556789988 55 999999988766554
No 151
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=48.00 E-value=27 Score=25.33 Aligned_cols=77 Identities=16% Similarity=0.052 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCeeEE
Q 016148 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWN 331 (394)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~ 331 (394)
+.++++|. +|..++... ...+|+++.. +. +..++ .|+.+... ..|.....
T Consensus 57 ~~i~v~d~---~G~~~~~~~----------~~~iG~~~~~---~~--------~~~al-~G~~~~~~-----~~~~~g~~ 106 (142)
T 3by8_A 57 LFIVVTDM---QSLRYSHPE----------AQRIGQPFKG---DD--------ILKAL-NGEENVAI-----NRGFLAQA 106 (142)
T ss_dssp SEEEEEET---TCBBSCCSS----------GGGTTSBCCC---GG--------GTGGG-GTCCEEEE-----ECSSSSCE
T ss_pred cEEEEECC---CCcEEECCC----------hHHCCCcCCC---CC--------HHHHh-CCCeEEEE-----ecCccEEE
Confidence 47888998 676655432 2356765431 11 11222 34443222 13333233
Q ss_pred EEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 332 LLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 332 ~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
.....||.+.+|+++|++++..++...
T Consensus 107 ~~~~~PV~~~~g~viGvv~vg~~~~~~ 133 (142)
T 3by8_A 107 LRVFTPIYDENHKQIGVVAIGLELSRV 133 (142)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EEEEEeEEcCCCCEEEEEEEeEEHHHH
Confidence 344559998889999999998887643
No 152
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=47.57 E-value=8.5 Score=35.31 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCC
Q 016148 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (394)
Q Consensus 253 ~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~ 296 (394)
.++.++.. +++|+.++....+++|.++++++|+++..++.+.
T Consensus 31 ~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 31 LVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 34556653 6899999999999999999999999987776544
No 153
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=41.12 E-value=65 Score=26.84 Aligned_cols=106 Identities=9% Similarity=-0.076 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhCC--CeEEEEcCCCCCCc-EEEechhhHHhcCCCcchhcCCCCccccCCCCChhHHHHHHHHHHh--C
Q 016148 15 RYTLWVHEALDELP--DSFTITDPSISGHP-IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE--E 89 (394)
Q Consensus 15 r~~~~l~~l~~~~~--~~i~~~d~~~~d~~-i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ 89 (394)
+....|..++++.+ ..|.++|.+ |+ ++.+|......+-.+..++ ..+ .....+..++.. +
T Consensus 64 ~l~~~~~~~~~~~~~~~~i~lid~~---G~~i~~~~~~~~~~~~~p~~~l--------~n~----~~R~yf~~a~~~~~~ 128 (295)
T 3lid_A 64 ILENMWSSVARNQKLYKQIRFLDTS---GTEKVRIKYDFKTSIAGPSLIL--------RDK----SAREYFKYAQSLDNE 128 (295)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEETT---SBEEEEEEEETTTTEEEECSCC--------CBC----TTSHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCccccEEEEECCC---CCEEEEEEccCCceeEcCcccc--------ccc----hhhHHHHHHhcCCCC
Confidence 34556777776655 348889998 75 4455543211111111111 111 112334445543 3
Q ss_pred CCeeEEEeeEecCC----CeEEEEEEEEeeeccCCCeeeEEEEEeccccccc
Q 016148 90 RPIEVNLLNYKKDG----TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (394)
Q Consensus 90 ~~~~~e~~~~~~dG----~~~~v~~~~~~i~~~~~g~~~~~~~~~~DITe~k 137 (394)
..+......-..+| ...|+-..+.|+.. +|++.|++++-.|+....
T Consensus 129 ~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~~--~g~~~GVlv~~i~l~~l~ 178 (295)
T 3lid_A 129 QISAWGIELERDKGELVYPLSPSLRILMPISV--NDVRQGYLVLNVDIEYLS 178 (295)
T ss_dssp CCEECCCEECEETTEECSSCCEEEEEEEEEEE--TTEEEEEEEEEEEHHHHH
T ss_pred cEEEeCceecccCCcccCCCCCEEEEEEEEcc--CCeEEEEEEEEecHHHHH
Confidence 33332222222233 22456666889965 899999999888776543
No 154
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=36.54 E-value=2.5e+02 Score=25.62 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=35.2
Q ss_pred EEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccc-cccCCCchhHHHHHHHHHh
Q 016148 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVDTDTTVLYQIKESIQ 310 (394)
Q Consensus 254 i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~ 310 (394)
++.++. +++|+.++....+++|.++ ++|+++.. ++.+ .....+...+.
T Consensus 29 Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~----~~~~~l~~~l~ 77 (505)
T 3nhq_A 29 LVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVGP----EVLRMLEEGLT 77 (505)
T ss_dssp EEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH----HHHHHHHHHHS
T ss_pred EEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCCH----HHHHHHHHHhh
Confidence 455666 6899999999999999988 99998877 6543 23344445444
No 155
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=30.52 E-value=2e+02 Score=22.71 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=20.3
Q ss_pred EEEEEEEeeeccCCCeeeEEEEEeccccc
Q 016148 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (394)
Q Consensus 107 ~v~~~~~~i~~~~~g~~~~~~~~~~DITe 135 (394)
++-....|++. +|++.|++++..++..
T Consensus 128 ~~i~~~~pi~~--~g~~~Gvv~~~i~l~~ 154 (260)
T 3by9_A 128 RGYYYAYPVIY--AAEILGVIVVKMDLSA 154 (260)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEECSHH
T ss_pred EEEEEEEEEcc--CCeEEEEEEEEEeHHH
Confidence 44455788876 7999999988777653
No 156
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=28.05 E-value=1.2e+02 Score=25.21 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcccceEEEEcCCCCCcCEEEeCHHHHHHhc
Q 016148 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~d~~~~dg~i~~~N~~~~~~~G 278 (394)
......+..+++..+...+++|. .+.|+.+|+++..+|+
T Consensus 95 ~~v~p~l~~lLd~l~~PA~V~d~---~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 95 EESLQYLIDMIRNMNVPAFVTDQ---YVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEET---TCBEEEEEHHHHHHHT
T ss_pred cccCHHHHHHHHhcCCCeEEECC---CCCHhhcCHHHHHHhC
Confidence 44556788889988889999999 5899999999999996
No 157
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=26.09 E-value=2.9e+02 Score=23.06 Aligned_cols=83 Identities=16% Similarity=0.030 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCCcCEEEeCHHHHHHhcCCchhhcCCcccccccCCCchhHHHHHHHHHhccCeeeEEEEEEecCCCeeEE
Q 016148 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWN 331 (394)
Q Consensus 252 ~~i~~~d~~~~dg~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~~~ 331 (394)
..++++|. +|+++..+.. -.+..++|.+ ..+++ .+.+++..+.... +..-...|. ++
T Consensus 114 ~~i~v~d~---~G~viass~~------~~p~~~~g~d------~~~R~----yf~~Al~g~~~~~--~~~~~~tg~--~~ 170 (305)
T 3e4o_A 114 AVIYLIDR---SGVAVAASNW------QEPTSFVGND------YAFRD----YFRLAVRDGMAEH--FAMGTVSKR--PG 170 (305)
T ss_dssp SEEEEEET---TSBEEEETTT------TSTTCCTTCB------CTTSH----HHHHHHHHSEEEE--EEECTTTCC--EE
T ss_pred cEEEEECC---CCCEEEeCCC------cCcccccCCC------ccccH----HHHHHHhcCCcEE--EEEecCCCC--EE
Confidence 46889999 7998876531 1112223332 12222 2334444333221 122222343 45
Q ss_pred EEEeeeeecCCCCEEEEEEEEeecchh
Q 016148 332 LLHISPIRNASGKIAYFAAVHTEEGCR 358 (394)
Q Consensus 332 ~~~~~~i~d~~g~~~~~~~~~~DIT~~ 358 (394)
.....||.+ +|+++|++++..|+...
T Consensus 171 i~~a~PV~~-~G~viGVv~v~i~l~~l 196 (305)
T 3e4o_A 171 LYISRRVDG-PGGPLGVIVAKLEFDGV 196 (305)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEECCHHH
T ss_pred EEEEEEEcc-CCeEEEEEEEEEcHHHH
Confidence 567789986 59999999998887753
No 158
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=21.73 E-value=2e+02 Score=22.14 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=20.3
Q ss_pred EEEEEeeeeecCC-CCEEEEEEEEeecc
Q 016148 330 WNLLHISPIRNAS-GKIAYFAAVHTEEG 356 (394)
Q Consensus 330 ~~~~~~~~i~d~~-g~~~~~~~~~~DIT 356 (394)
++.....|+.+.+ |++.|++++..+..
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i~~~ 145 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDVSLA 145 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEECHH
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEEEHH
Confidence 5566678998865 99999888766643
Done!