Query 016150
Match_columns 394
No_of_seqs 127 out of 1300
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03388 ascorbase L-ascorbat 100.0 7.3E-73 1.6E-77 575.3 40.9 379 5-383 161-540 (541)
2 PLN02191 L-ascorbate oxidase 100.0 2E-71 4.3E-76 565.3 41.5 384 5-389 183-569 (574)
3 PLN02604 oxidoreductase 100.0 1E-68 2.2E-73 546.4 41.5 377 5-383 184-563 (566)
4 PLN00044 multi-copper oxidase- 100.0 6.2E-65 1.3E-69 514.2 37.4 347 6-386 189-559 (596)
5 PLN02792 oxidoreductase 100.0 1.5E-64 3.3E-69 509.2 37.0 330 8-385 178-527 (536)
6 PLN02991 oxidoreductase 100.0 1E-63 2.2E-68 502.6 38.1 334 7-385 188-534 (543)
7 PLN02835 oxidoreductase 100.0 2.5E-63 5.4E-68 501.9 37.4 330 7-383 189-533 (539)
8 PLN02354 copper ion binding / 100.0 3.2E-63 6.9E-68 501.8 37.7 339 6-386 186-543 (552)
9 PLN02168 copper ion binding / 100.0 5.2E-63 1.1E-67 498.3 37.4 333 8-384 187-544 (545)
10 TIGR03389 laccase laccase, pla 100.0 3E-62 6.5E-67 497.8 39.0 347 8-381 165-539 (539)
11 TIGR03390 ascorbOXfungal L-asc 100.0 6.4E-59 1.4E-63 471.9 36.5 338 5-368 167-533 (538)
12 KOG1263 Multicopper oxidases [ 100.0 2.3E-58 5E-63 461.5 35.8 349 5-388 188-562 (563)
13 TIGR01480 copper_res_A copper- 100.0 1.3E-44 2.8E-49 367.3 31.6 251 46-366 259-586 (587)
14 PRK10965 multicopper oxidase; 100.0 2.8E-43 6E-48 354.9 29.0 239 48-366 224-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 3.1E-43 6.6E-48 351.6 27.0 234 47-368 220-469 (471)
16 COG2132 SufI Putative multicop 100.0 2E-35 4.3E-40 296.2 27.7 249 48-367 200-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 2.1E-31 4.6E-36 225.0 11.2 107 257-369 31-137 (138)
18 PF00394 Cu-oxidase: Multicopp 100.0 1.1E-28 2.4E-33 213.1 14.0 124 5-143 32-158 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.6 4.5E-16 9.8E-21 148.2 9.1 109 7-143 186-297 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.4 6.4E-11 1.4E-15 113.0 24.0 91 262-367 204-296 (311)
21 PLN02604 oxidoreductase 99.1 1.6E-09 3.4E-14 111.6 13.8 89 261-368 56-144 (566)
22 PF07732 Cu-oxidase_3: Multico 98.8 2.1E-08 4.6E-13 81.7 7.8 90 260-369 26-116 (117)
23 TIGR03388 ascorbase L-ascorbat 98.6 4.5E-07 9.7E-12 93.2 14.2 89 261-368 33-121 (541)
24 TIGR03389 laccase laccase, pla 98.5 7.4E-06 1.6E-10 84.3 19.6 76 261-352 188-264 (539)
25 PLN02835 oxidoreductase 98.5 2.4E-05 5.3E-10 80.2 21.1 73 261-349 203-276 (539)
26 PLN02792 oxidoreductase 98.3 4.1E-05 9E-10 78.3 18.5 74 261-350 194-268 (536)
27 PLN02354 copper ion binding / 98.3 6.4E-05 1.4E-09 77.3 19.7 75 261-351 208-283 (552)
28 PLN02991 oxidoreductase 98.2 0.00013 2.7E-09 74.8 18.6 72 261-348 203-276 (543)
29 PF00394 Cu-oxidase: Multicopp 98.2 7E-06 1.5E-10 70.8 8.1 89 260-364 60-153 (159)
30 PLN02191 L-ascorbate oxidase 98.2 1.2E-05 2.5E-10 83.2 11.1 89 260-367 54-142 (574)
31 TIGR03390 ascorbOXfungal L-asc 98.2 0.00012 2.6E-09 75.3 18.4 67 261-343 199-266 (538)
32 TIGR03095 rusti_cyanin rusticy 98.1 1.7E-05 3.6E-10 67.3 9.4 89 260-366 52-147 (148)
33 PRK10883 FtsI repressor; Provi 98.0 0.0006 1.3E-08 69.0 19.2 73 262-350 222-295 (471)
34 TIGR01480 copper_res_A copper- 97.9 5.9E-05 1.3E-09 77.9 10.4 87 260-368 76-162 (587)
35 TIGR02656 cyanin_plasto plasto 97.8 0.00015 3.2E-09 57.3 8.0 81 261-366 18-98 (99)
36 PLN02168 copper ion binding / 97.7 0.00014 3E-09 74.6 9.8 88 260-368 57-145 (545)
37 TIGR03096 nitroso_cyanin nitro 97.7 0.0002 4.4E-09 59.0 8.1 60 261-353 62-121 (135)
38 PRK10965 multicopper oxidase; 97.6 0.00027 5.9E-09 72.3 8.8 67 47-114 426-495 (523)
39 PLN00044 multi-copper oxidase- 97.6 0.0003 6.5E-09 72.7 9.1 88 260-368 60-148 (596)
40 PF07731 Cu-oxidase_2: Multico 97.5 0.0008 1.7E-08 56.2 9.6 73 46-121 33-116 (138)
41 PF13473 Cupredoxin_1: Cupredo 97.2 0.0014 3.1E-08 52.0 7.1 68 261-362 36-103 (104)
42 PRK02888 nitrous-oxide reducta 96.9 0.0046 1E-07 63.4 9.2 78 261-368 556-634 (635)
43 PF00127 Copper-bind: Copper b 96.8 0.012 2.6E-07 46.2 9.1 81 261-366 18-98 (99)
44 KOG1263 Multicopper oxidases [ 96.7 0.007 1.5E-07 62.2 8.7 89 260-369 59-148 (563)
45 PRK02710 plastocyanin; Provisi 96.5 0.015 3.2E-07 47.5 8.2 71 261-366 48-118 (119)
46 COG2132 SufI Putative multicop 96.1 0.39 8.5E-06 48.6 17.6 74 263-352 202-275 (451)
47 COG4454 Uncharacterized copper 95.6 0.04 8.7E-07 46.2 6.3 94 262-368 65-158 (158)
48 TIGR02375 pseudoazurin pseudoa 95.2 0.18 3.9E-06 40.8 9.0 35 330-368 54-88 (116)
49 PF06525 SoxE: Sulfocyanin (So 93.5 0.83 1.8E-05 40.2 9.8 96 260-368 86-187 (196)
50 TIGR03102 halo_cynanin halocya 93.3 0.8 1.7E-05 37.0 8.9 73 261-367 43-115 (115)
51 PF07732 Cu-oxidase_3: Multico 93.1 0.092 2E-06 42.6 3.1 75 46-126 25-100 (117)
52 PF13473 Cupredoxin_1: Cupredo 93.0 0.37 8E-06 38.0 6.5 62 42-122 30-91 (104)
53 TIGR03096 nitroso_cyanin nitro 92.9 0.51 1.1E-05 39.1 7.3 63 41-122 55-117 (135)
54 TIGR02866 CoxB cytochrome c ox 91.5 1.1 2.4E-05 40.0 8.4 70 261-366 118-190 (201)
55 PF00116 COX2: Cytochrome C ox 91.1 2.5 5.4E-05 34.4 9.3 62 260-355 46-107 (120)
56 TIGR03094 sulfo_cyanin sulfocy 90.9 3.6 7.8E-05 35.7 10.3 97 259-368 84-186 (195)
57 TIGR02657 amicyanin amicyanin. 89.9 2.2 4.9E-05 32.0 7.7 71 261-366 12-82 (83)
58 TIGR03095 rusti_cyanin rusticy 89.9 2.4 5.2E-05 35.9 8.5 73 47-124 52-132 (148)
59 TIGR02656 cyanin_plasto plasto 84.4 3.7 8.1E-05 32.0 6.3 68 45-122 15-83 (99)
60 COG1622 CyoA Heme/copper-type 82.8 6.5 0.00014 36.3 8.0 71 261-365 138-209 (247)
61 PF14344 DUF4397: Domain of un 80.8 27 0.00059 28.0 11.5 21 58-78 3-24 (122)
62 COG3794 PetE Plastocyanin [Ene 80.4 12 0.00025 30.9 7.8 39 325-367 89-127 (128)
63 PF12690 BsuPI: Intracellular 80.4 18 0.0004 27.1 8.4 66 57-123 4-82 (82)
64 COG4454 Uncharacterized copper 79.3 8.6 0.00019 32.5 6.8 78 45-127 61-144 (158)
65 TIGR02695 azurin azurin. Azuri 74.5 17 0.00038 29.6 7.1 76 47-122 16-109 (125)
66 PF06525 SoxE: Sulfocyanin (So 73.0 26 0.00057 30.9 8.4 76 47-124 86-170 (196)
67 TIGR01432 QOXA cytochrome aa3 71.9 11 0.00024 34.0 6.2 58 261-352 131-188 (217)
68 TIGR01433 CyoA cytochrome o ub 71.6 12 0.00025 34.1 6.2 59 261-353 140-198 (226)
69 PF11142 DUF2917: Protein of u 71.3 13 0.00029 26.4 5.2 47 49-107 2-48 (63)
70 TIGR02695 azurin azurin. Azuri 68.1 55 0.0012 26.7 8.7 95 259-364 15-123 (125)
71 PTZ00047 cytochrome c oxidase 66.9 39 0.00083 29.0 7.9 60 261-354 74-133 (162)
72 MTH00140 COX2 cytochrome c oxi 65.9 33 0.00071 31.2 8.0 71 260-364 140-211 (228)
73 MTH00047 COX2 cytochrome c oxi 63.2 36 0.00077 30.2 7.4 60 261-354 117-176 (194)
74 PF07691 PA14: PA14 domain; I 63.0 63 0.0014 26.3 8.7 62 48-114 53-121 (145)
75 smart00758 PA14 domain in bact 59.0 78 0.0017 25.7 8.5 61 49-114 52-113 (136)
76 PRK02710 plastocyanin; Provisi 58.9 41 0.00088 27.1 6.6 59 45-122 45-103 (119)
77 PRK10525 cytochrome o ubiquino 58.2 24 0.00051 33.8 5.8 59 261-353 152-210 (315)
78 PF00127 Copper-bind: Copper b 56.4 16 0.00035 28.3 3.7 63 45-122 15-83 (99)
79 MTH00139 COX2 cytochrome c oxi 56.0 39 0.00084 30.7 6.6 61 260-354 140-200 (226)
80 COG3354 FlaG Putative archaeal 52.0 74 0.0016 26.6 6.8 64 55-124 70-141 (154)
81 PF11614 FixG_C: IG-like fold 51.5 47 0.001 26.5 5.8 47 56-111 34-82 (118)
82 MTH00008 COX2 cytochrome c oxi 50.0 93 0.002 28.3 8.1 68 260-361 140-207 (228)
83 MTH00129 COX2 cytochrome c oxi 50.0 58 0.0013 29.7 6.7 61 260-354 140-200 (230)
84 PF07705 CARDB: CARDB; InterP 49.4 1.1E+02 0.0024 22.9 9.3 68 50-126 14-84 (101)
85 MTH00038 COX2 cytochrome c oxi 48.7 98 0.0021 28.2 8.0 68 260-361 140-207 (229)
86 MTH00185 COX2 cytochrome c oxi 48.6 1.1E+02 0.0023 28.0 8.2 68 260-361 140-207 (230)
87 MTH00098 COX2 cytochrome c oxi 48.5 1E+02 0.0023 28.0 8.1 68 260-361 140-207 (227)
88 PF01835 A2M_N: MG2 domain; I 48.5 63 0.0014 24.7 5.9 71 51-126 11-86 (99)
89 MTH00023 COX2 cytochrome c oxi 47.8 1.1E+02 0.0024 28.0 8.3 68 260-361 151-218 (240)
90 PRK02888 nitrous-oxide reducta 46.9 76 0.0016 33.4 7.6 61 44-122 552-614 (635)
91 PF12690 BsuPI: Intracellular 45.3 28 0.0006 26.2 3.3 16 96-111 17-32 (82)
92 PRK09918 putative fimbrial cha 44.5 66 0.0014 29.3 6.2 39 45-88 74-112 (230)
93 MTH00154 COX2 cytochrome c oxi 43.2 91 0.002 28.4 6.9 61 260-354 140-200 (227)
94 MTH00117 COX2 cytochrome c oxi 40.6 1.6E+02 0.0034 26.8 8.0 68 260-361 140-207 (227)
95 PF14392 zf-CCHC_4: Zinc knuck 39.0 47 0.001 22.1 3.3 31 328-358 15-45 (49)
96 MTH00168 COX2 cytochrome c oxi 39.0 94 0.002 28.2 6.3 61 260-354 140-200 (225)
97 MTH00051 COX2 cytochrome c oxi 37.9 1.6E+02 0.0035 26.9 7.7 62 260-355 144-205 (234)
98 PF15415 DUF4622: Protein of u 37.4 61 0.0013 29.5 4.6 42 48-91 95-138 (310)
99 PF14874 PapD-like: Flagellar- 37.2 1.9E+02 0.004 22.1 8.6 52 51-112 16-72 (102)
100 PF04151 PPC: Bacterial pre-pe 36.8 1.5E+02 0.0033 20.9 7.6 34 47-89 5-38 (70)
101 MTH00027 COX2 cytochrome c oxi 35.7 1.1E+02 0.0025 28.4 6.4 61 260-354 174-234 (262)
102 PRK11385 putativi pili assembl 34.1 86 0.0019 28.7 5.2 21 45-65 83-103 (236)
103 MTH00080 COX2 cytochrome c oxi 33.9 1.5E+02 0.0031 27.1 6.7 60 260-353 143-202 (231)
104 PF14016 DUF4232: Protein of u 33.4 1.5E+02 0.0032 24.1 6.2 59 53-113 17-82 (131)
105 KOG4078 Putative mitochondrial 33.0 20 0.00043 29.7 0.8 37 51-89 120-156 (173)
106 PF10633 NPCBM_assoc: NPCBM-as 32.7 1.9E+02 0.0042 20.9 7.8 66 51-125 1-75 (78)
107 PRK15195 fimbrial chaperone pr 32.5 74 0.0016 29.0 4.6 22 45-66 76-97 (229)
108 PRK15208 long polar fimbrial c 32.2 83 0.0018 28.6 4.8 22 45-66 72-93 (228)
109 TIGR02745 ccoG_rdxA_fixG cytoc 32.0 1.5E+02 0.0033 29.8 7.0 50 55-112 348-398 (434)
110 PF08685 GON: GON domain; Int 31.4 65 0.0014 28.7 3.8 26 65-90 89-114 (201)
111 PRK15295 fimbrial assembly cha 31.0 99 0.0021 28.1 5.1 22 45-66 71-92 (226)
112 COG1470 Predicted membrane pro 30.6 5.9E+02 0.013 25.9 10.9 75 46-127 388-469 (513)
113 PF07233 DUF1425: Protein of u 30.6 1.4E+02 0.0029 23.0 5.1 46 78-123 45-92 (94)
114 PRK15254 fimbrial chaperone pr 30.5 1.1E+02 0.0023 28.2 5.2 20 45-64 67-86 (239)
115 PF08329 ChitinaseA_N: Chitina 30.5 98 0.0021 25.6 4.5 44 47-94 75-120 (133)
116 COG3121 FimC P pilus assembly 30.4 97 0.0021 28.3 5.0 41 45-89 79-119 (235)
117 PRK15299 fimbrial chaperone pr 30.3 1E+02 0.0022 28.0 5.1 22 45-66 75-96 (227)
118 MTH00076 COX2 cytochrome c oxi 29.8 2.6E+02 0.0056 25.4 7.6 63 260-356 140-202 (228)
119 PRK15192 fimbrial chaperone Bc 28.1 1.2E+02 0.0026 27.7 5.1 22 45-66 79-100 (234)
120 COG4263 NosZ Nitrous oxide red 26.3 2E+02 0.0043 29.0 6.4 37 325-361 593-633 (637)
121 cd09030 DUF1425 Putative perip 26.0 2.1E+02 0.0045 22.1 5.6 45 78-122 53-99 (101)
122 PRK15249 fimbrial chaperone pr 25.6 1E+02 0.0022 28.5 4.3 21 45-65 84-104 (253)
123 PF07233 DUF1425: Protein of u 25.6 1.6E+02 0.0035 22.5 4.8 60 268-345 26-85 (94)
124 PF04225 OapA: Opacity-associa 25.4 1.7E+02 0.0036 22.1 4.7 41 49-89 41-82 (85)
125 PF05938 Self-incomp_S1: Plant 25.4 1.4E+02 0.0031 23.3 4.6 30 325-354 28-57 (110)
126 PF04379 DUF525: Protein of un 25.0 1.8E+02 0.0039 22.2 4.8 48 56-106 15-66 (90)
127 PRK15211 fimbrial chaperone pr 24.9 1.3E+02 0.0028 27.4 4.7 22 45-66 73-94 (229)
128 PRK09926 putative chaperone pr 24.5 1E+02 0.0023 28.3 4.1 22 45-66 80-101 (246)
129 PF00345 PapD_N: Pili and flag 24.3 1.3E+02 0.0027 24.0 4.2 33 45-77 54-91 (122)
130 PF10636 hemP: Hemin uptake pr 24.2 1.1E+02 0.0024 19.4 2.9 19 47-65 14-32 (38)
131 PF10989 DUF2808: Protein of u 24.2 90 0.002 26.1 3.4 26 328-353 99-128 (146)
132 TIGR02375 pseudoazurin pseudoa 23.7 1.8E+02 0.0038 23.4 4.8 20 45-64 13-32 (116)
133 PRK15290 lfpB fimbrial chapero 23.2 1.6E+02 0.0036 27.0 5.1 21 45-65 90-110 (243)
134 PRK15218 fimbrial chaperone pr 22.5 1.9E+02 0.0042 26.2 5.4 22 45-66 73-94 (226)
135 PRK15253 putative fimbrial ass 22.3 1.9E+02 0.004 26.7 5.3 22 45-66 88-109 (242)
136 PF00116 COX2: Cytochrome C ox 22.2 4.2E+02 0.009 21.3 8.0 59 46-124 45-103 (120)
137 PRK15285 putative fimbrial cha 22.0 1.9E+02 0.0042 26.7 5.4 21 45-65 77-97 (250)
138 PRK05461 apaG CO2+/MG2+ efflux 21.8 3E+02 0.0066 22.5 5.9 49 56-107 32-84 (127)
139 PRK15274 putative periplasmic 21.2 2E+02 0.0043 26.8 5.2 21 45-65 78-98 (257)
140 PRK15188 fimbrial chaperone pr 20.5 2.3E+02 0.0049 25.8 5.4 22 45-66 78-99 (228)
141 PRK03999 translation initiatio 20.2 4.5E+02 0.0097 21.5 6.6 25 51-75 32-60 (129)
No 1
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=7.3e-73 Score=575.25 Aligned_cols=379 Identities=73% Similarity=1.252 Sum_probs=286.1
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEe
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 84 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~ 84 (394)
|.+.+|++||||+|+++|+............|.+..+..+.+.+|+|++|++|||||||+|+.+.+.|+||+|+|+|||+
T Consensus 161 ~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~ 240 (541)
T TIGR03388 161 WIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEA 240 (541)
T ss_pred CCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEe
Confidence 44678999999999999976443333345667766677778888999999999999999999999999999999999999
Q ss_pred CCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 016150 85 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYD 164 (394)
Q Consensus 85 DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~ 164 (394)
||++++|+.++.|.|++||||||||++++.++++||||+...+.......++|+|+|.+...+..+....+..+.+.+..
T Consensus 241 DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~ 320 (541)
T TIGR03388 241 DGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFD 320 (541)
T ss_pred CCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccc
Confidence 99999999999999999999999999988766699999876654334456789999975433322322223333444332
Q ss_pred cccccccccccccCCCCCCCccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCCCCCCCCCC
Q 016150 165 HSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEY 244 (394)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~~~ 244 (394)
....+....+.....+.++...++++.+...+....+...|++||.+|..|..|.|.+...+....|+...++..|+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (541)
T TIGR03388 321 RSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDY 400 (541)
T ss_pred hhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccc
Confidence 22212212221111222334456666654443334456789999999998999999888765555554433334443333
Q ss_pred CCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCch-hhcccCCCCCCCc
Q 016150 245 DVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLK 323 (394)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~~r 323 (394)
+..........+.++.++.++.|++||++|+|.+.+.......||||||||+||||++|.|.|+.. +...+|+.||++|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~R 480 (541)
T TIGR03388 401 DIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLR 480 (541)
T ss_pred cccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEe
Confidence 322222222344466789999999999999997643222356899999999999999999988643 3456899999999
Q ss_pred ceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeeccccccCCCCCCccccc
Q 016150 324 NTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGL 383 (394)
Q Consensus 324 DTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~~~~~~~p~~~~~c~~ 383 (394)
||+.|+++||++|||+|||||.|+|||||+||++.||+++|+|++++++++|+.++.||.
T Consensus 481 DTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~~ 540 (541)
T TIGR03388 481 NTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCGL 540 (541)
T ss_pred ceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccccccCCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999984
No 2
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2e-71 Score=565.28 Aligned_cols=384 Identities=66% Similarity=1.176 Sum_probs=277.5
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCC-CccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEE
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNG-SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE 83 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~-~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa 83 (394)
|.+.+|++||||+|++.|+........ ....|.+..+.++.+++|+|++||+|||||||+|+.+.+.|+||||+|+|||
T Consensus 183 ~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa 262 (574)
T PLN02191 183 WIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE 262 (574)
T ss_pred cCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE
Confidence 557899999999999999754322221 1224655556677777899999999999999999999999999999999999
Q ss_pred eCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 016150 84 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDY 163 (394)
Q Consensus 84 ~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~ 163 (394)
+||++++|+.+++|.|++||||||||++++.++++||||+.............|+|+|.....+..|....+..+.+.+.
T Consensus 263 ~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~ 342 (574)
T PLN02191 263 ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDF 342 (574)
T ss_pred cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCccccc
Confidence 99999999999999999999999999999876669999997654332233457999996544322232222223333332
Q ss_pred CcccccccccccccCCCCCCC-ccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCCCCCCCC
Q 016150 164 DHSKSFSNKIFALMGSPKPPT-NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSN 242 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~ 242 (394)
.....+....+.....+.++. ..++.+.+ .......+...|++||++|..|..|.|.++..+....|+.+.|+..+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~ 421 (574)
T PLN02191 343 ERSKNFSKKIFSAMGSPSPPKKYRKRLILL-NTQNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRM 421 (574)
T ss_pred chhhcccccccccccCCCCCCcccceEEEe-cccceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccc
Confidence 222111111111111121221 22334433 2222223556899999999999999998887666555554443333332
Q ss_pred CCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCch-hhcccCCCCCC
Q 016150 243 EYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPP 321 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~ 321 (394)
++.............+..++.++.|++|||+|+|.+.........||||||||+||||++|.|.|++. +...+|+.||+
T Consensus 422 ~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~ 501 (574)
T PLN02191 422 DYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPP 501 (574)
T ss_pred cccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCC
Confidence 22211111111223456788999999999999997421111256899999999999999999999753 33468999999
Q ss_pred CcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeeccccccCCCCCCccccccCcccc
Q 016150 322 LKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFM 389 (394)
Q Consensus 322 ~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~~~~~~~p~~~~~c~~~~~~~~ 389 (394)
+|||+.|+++||++|||+|||||.|+|||||+||++.||+++|+|++++++++|+.++.|+......+
T Consensus 502 rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~~~~~~ 569 (574)
T PLN02191 502 LRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLTKQFLM 569 (574)
T ss_pred cCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChhhccCCCcchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999986544444
No 3
>PLN02604 oxidoreductase
Probab=100.00 E-value=1e-68 Score=546.45 Aligned_cols=377 Identities=51% Similarity=0.943 Sum_probs=268.4
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEe
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 84 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~ 84 (394)
|.+.+|++||||+|+++|+....- ......|. ..+..+.+++++|++||+|||||||+|+.+.+.|+||||+|+|||+
T Consensus 184 ~~~~~d~~liNG~G~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~ 261 (566)
T PLN02604 184 WVGEPQSLLIQGKGRYNCSLVSSP-YLKAGVCN-ATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEA 261 (566)
T ss_pred cCCCCCceEEcCCCCCCCccccCc-cccccccc-cCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEe
Confidence 446789999999999999742110 00011233 1233456778999999999999999999999999999999999999
Q ss_pred CCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 016150 85 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYD 164 (394)
Q Consensus 85 DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~ 164 (394)
||++++|++++.|.|++||||||||++++.++++||||+.......+...++|||+|.+......+...++..+.+.+..
T Consensus 262 DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~ 341 (566)
T PLN02604 262 DGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVE 341 (566)
T ss_pred CCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccc
Confidence 99999999999999999999999999998766689999865443334567889999974321111111111112233221
Q ss_pred cccccccccccccC-CCCCCCccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCCCCCCCC-
Q 016150 165 HSKSFSNKIFALMG-SPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSN- 242 (394)
Q Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~- 242 (394)
.............. ...++...++++.+........+...|+|||++|..|..|.|........+.|..+.++..+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~ 421 (566)
T PLN02604 342 PRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFA 421 (566)
T ss_pred hhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccc
Confidence 11100000000000 0112234456665543333334557899999999988899988876654555543322322220
Q ss_pred CCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCch-hhcccCCCCCC
Q 016150 243 EYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPP 321 (394)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~~~~~p~ 321 (394)
.++......+.+...+..++.++.|++||++|+|.+.+......+||||||||+|||+++|.|.|+.. +...+|+.||+
T Consensus 422 ~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~ 501 (566)
T PLN02604 422 NYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPI 501 (566)
T ss_pred cccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCC
Confidence 11111011111223355678999999999999998644222356899999999999999999988654 34568999999
Q ss_pred CcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeeccccccCCCCCCccccc
Q 016150 322 LKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGL 383 (394)
Q Consensus 322 ~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~~~~~~~p~~~~~c~~ 383 (394)
+|||+.|+++||++|||+|||||.|+|||||+||+..||+++|+|++++++++|..++.|+.
T Consensus 502 rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~~ 563 (566)
T PLN02604 502 MKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCGE 563 (566)
T ss_pred ccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeChhhccCCCCCcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6.2e-65 Score=514.22 Aligned_cols=347 Identities=26% Similarity=0.436 Sum_probs=253.2
Q ss_pred cCCCCeEEEccCCCCC--CCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEE
Q 016150 6 IHTHQTLLINGRGQFN--CSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE 83 (394)
Q Consensus 6 ~~~~d~~LING~g~~~--c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa 83 (394)
++.+|++||||+|++. |+... ..+..++++|++||+|||||||+++.+.+.|+|+||+|+|||
T Consensus 189 ~~~~d~~lING~g~~~~n~~~~~---------------~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa 253 (596)
T PLN00044 189 LGAPDGVLINAFGPYQYNDSLVP---------------PGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE 253 (596)
T ss_pred CCCCCceEEcccCccccCCcccc---------------CCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE
Confidence 4568999999999863 32100 122346899999999999999999999999999999999999
Q ss_pred eCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeec--CC-CCCCCceeEEEEecCCCCCCCCCCCCCCCCC-
Q 016150 84 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR--GR-KPATPPALTLLNYHPTSASKIPLSPPPITPR- 159 (394)
Q Consensus 84 ~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~--~~-~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~- 159 (394)
+||.|++|+.++.|.|++||||||||++++.++++||||+... .. ..+...+.|||+|.++...... +.|..+.
T Consensus 254 ~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~--~~P~~p~~ 331 (596)
T PLN00044 254 AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASG--PLPDAPDD 331 (596)
T ss_pred eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCC--CCCCCCcc
Confidence 9999999999999999999999999999997655899998642 11 1245567899999764321111 1132232
Q ss_pred CCCCCcccccccccccccC--CCCCCCcc-ceEEEEEeeee---------ccCCeeeEEEccccCCCCCCCchhhhhccC
Q 016150 160 WDDYDHSKSFSNKIFALMG--SPKPPTNF-HRRLTLLNTQN---------TINGFTKWAINNVSLTLPPTPYLGSIKYGL 227 (394)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~ 227 (394)
+.+...+..+...+..... .+.+.+.. +....+...+. ...|...|+|||++|..|+.|+|....++.
T Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~ 411 (596)
T PLN00044 332 QYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNV 411 (596)
T ss_pred cCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccC
Confidence 3444332222222221111 11111111 11111111100 112457899999999999999997777666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCC
Q 016150 228 KDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKF 307 (394)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 307 (394)
.++|+.+-|. . +++.....++.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|
T Consensus 412 ~gv~~~~fp~-~----------pp~~~~~~~t~v~~~~~n~~VeiV~qn~~------~~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 412 PGVFKLDFPN-H----------PMNRLPKLDTSIINGTYKGFMEIIFQNNA------TNVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CCcccCCCCC-C----------CCccccccCceEEEcCCCCEEEEEEeCCC------CCCCCeeEcCccEEEEeecCCCC
Confidence 6766543110 0 00111223567889999999999999964 35899999999999999999999
Q ss_pred CchhhcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEee-----c-cccccCCCCCCccc
Q 016150 308 TKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----G-VETVGNIPNQALAC 381 (394)
Q Consensus 308 ~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~-----~-~~~~~~~p~~~~~c 381 (394)
++.++..+|+.||++|||+.|+++||++|||+|||||+|+||||++.|+..||+++|.| + .+++.++|++++.|
T Consensus 475 ~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 475 TDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 87767789999999999999999999999999999999999999999999999999853 3 35677899999999
Q ss_pred cccCc
Q 016150 382 GLTGK 386 (394)
Q Consensus 382 ~~~~~ 386 (394)
|....
T Consensus 555 g~~~~ 559 (596)
T PLN00044 555 GALSS 559 (596)
T ss_pred ccccc
Confidence 86533
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.5e-64 Score=509.16 Aligned_cols=330 Identities=26% Similarity=0.442 Sum_probs=246.4
Q ss_pred CCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCC
Q 016150 8 THQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 87 (394)
Q Consensus 8 ~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~ 87 (394)
.+|++||||++++.| ++|+|++||+|||||||+|+.+.+.|+|+||+|+|||+||+
T Consensus 178 ~~d~~liNG~~~~~~------------------------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~ 233 (536)
T PLN02792 178 MPDGVMINGQGVSYV------------------------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGT 233 (536)
T ss_pred CCCEEEEeccCCCCc------------------------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCc
Confidence 579999999998532 47999999999999999999999999999999999999999
Q ss_pred ccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCCCccc
Q 016150 88 YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSK 167 (394)
Q Consensus 88 ~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~~~ 167 (394)
+++|..++.|.|++||||||||++++.++ +|||++..... .....+.|+|+|.++.... +. .+..|.+.+...+.
T Consensus 234 ~v~p~~~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~-~~--~p~~p~~~~~~~~~ 308 (536)
T PLN02792 234 HTVQSMYTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFI-AAKVLVSSTLHYSNSKGHK-II--HARQPDPDDLEWSI 308 (536)
T ss_pred cCCCcceeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccC-CCCCceEEEEEECCCCCCC-CC--CCCCCCcCCccccc
Confidence 99999999999999999999999998665 99999875422 2235678999997643221 11 12222233332222
Q ss_pred ccccccccccC--CCCCCC---------ccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCC--
Q 016150 168 SFSNKIFALMG--SPKPPT---------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQN-- 234 (394)
Q Consensus 168 ~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~-- 234 (394)
.+......... .+.+.+ ..++++.+........+...|+|||++|..|++|+|.+..+.+.+++..+
T Consensus 309 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~ 388 (536)
T PLN02792 309 KQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSI 388 (536)
T ss_pred cchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccC
Confidence 11111111000 111111 11223222211111234578999999999999999987766555555322
Q ss_pred --CCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhh
Q 016150 235 --GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDE 312 (394)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~ 312 (394)
.||..+ ....++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.+.
T Consensus 389 ~~~p~~~~-------------~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~G~G~~~~~~~ 449 (536)
T PLN02792 389 PDKPRRGG-------------GMRLDTSVMGAHHNAFLEIIFQNRE------KIVQSYHLDGYNFWVVGINKGIWSRASR 449 (536)
T ss_pred ccCCcccC-------------CCccCceEEEcCCCCEEEEEEECCC------CCCCCeeeCCCceEEEeecCCCCCcccc
Confidence 122111 1123456889999999999999975 3489999999999999999999987666
Q ss_pred cccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEe-----eccccccCCCCCCccccccC
Q 016150 313 KKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA-----LGVETVGNIPNQALACGLTG 385 (394)
Q Consensus 313 ~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~-----~~~~~~~~~p~~~~~c~~~~ 385 (394)
..+|+.||++|||+.|+++||++|||+|||||+|+||||+.+|+..||.++|. ++.+++.++|++++.||...
T Consensus 450 ~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~ 527 (536)
T PLN02792 450 REYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRAS 527 (536)
T ss_pred cccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcccccc
Confidence 78999999999999999999999999999999999999999999999999995 34567788999999998543
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=1e-63 Score=502.57 Aligned_cols=334 Identities=27% Similarity=0.489 Sum_probs=241.6
Q ss_pred CCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCC
Q 016150 7 HTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 86 (394)
Q Consensus 7 ~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG 86 (394)
+.+|++|||||+.. ++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||
T Consensus 188 ~~~d~~liNG~~~~--------------------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG 241 (543)
T PLN02991 188 PLPDGILINGRGSG--------------------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEG 241 (543)
T ss_pred CCCCEEEEccCCCC--------------------------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCC
Confidence 35899999999752 3699999999999999999999999999999999999999
Q ss_pred CccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCC-CCCCCCCCCCCCCCCc
Q 016150 87 NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKI-PLSPPPITPRWDDYDH 165 (394)
Q Consensus 87 ~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~-p~~~~~~~~~~~~~~~ 165 (394)
++++|+.++.|.|++||||||||++++..+ +||||+...... ....+.|||+|.++..... +....+....+. ...
T Consensus 242 ~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~-~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~-~~~ 318 (543)
T PLN02991 242 THTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTS-KILITTGVLHYSNSAGPVSGPIPDGPIQLSWS-FDQ 318 (543)
T ss_pred ccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCC-CCcceEEEEEeCCCCCCCCCCCCCCCcccccc-ccc
Confidence 999999999999999999999999999765 999998754322 2345789999976532111 100001000011 000
Q ss_pred ccccccccccccCCCCCCC-------ccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCCCC
Q 016150 166 SKSFSNKIFALMGSPKPPT-------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPE 238 (394)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~ 238 (394)
.......+......+.|.. ..++.+.+........+...|+|||++|..|..|+|......+.+.|+.+..+.
T Consensus 319 ~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~ 398 (543)
T PLN02991 319 ARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPD 398 (543)
T ss_pred hhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccc
Confidence 0000001111000111110 112222221111112355689999999999999999776665556654321110
Q ss_pred CCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCC
Q 016150 239 NFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLK 318 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~ 318 (394)
++ ++.....++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+..+...+|+.
T Consensus 399 -~~---------~~~~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~ 462 (543)
T PLN02991 399 -QP---------TNGAIFPVTSVMQTDYKAFVEIVFENWE------DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLN 462 (543)
T ss_pred -cC---------CCCccccCCcEEEcCCCCEEEEEEeCCC------CCCCCeeeCCcceEEEEeCCCCCCcccccccCCC
Confidence 00 0111222356789999999999999976 3589999999999999999999986656679999
Q ss_pred CCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEe-----eccccccCCCCCCccccccC
Q 016150 319 NPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA-----LGVETVGNIPNQALACGLTG 385 (394)
Q Consensus 319 ~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~-----~~~~~~~~~p~~~~~c~~~~ 385 (394)
||++|||+.|+++||++|||+|||||.|+|||||..|+..||.+++. ++.++++++|++++.||...
T Consensus 463 nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~ 534 (543)
T PLN02991 463 DAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRAT 534 (543)
T ss_pred CCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCC
Confidence 99999999999999999999999999999999999999999999994 34567788999999997443
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.5e-63 Score=501.93 Aligned_cols=330 Identities=28% Similarity=0.497 Sum_probs=238.7
Q ss_pred CCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCC
Q 016150 7 HTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 86 (394)
Q Consensus 7 ~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG 86 (394)
+.+|++||||++. ++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||
T Consensus 189 ~~~d~~liNG~~~---------------------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG 241 (539)
T PLN02835 189 PFPDGVLINGQTQ---------------------------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEG 241 (539)
T ss_pred CCCceEEEccccC---------------------------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECC
Confidence 4579999999975 2689999999999999999999999999999999999999
Q ss_pred CccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCC---CC
Q 016150 87 NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD---DY 163 (394)
Q Consensus 87 ~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~---~~ 163 (394)
++++|+.++.|.|++||||||||++++.++ +|||++..... .....+.|+|+|.++.....+ +.|..+... +.
T Consensus 242 ~~v~p~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~-~~~~~~~ail~Y~~~~~~~~~--~~p~~p~~~~~~~~ 317 (539)
T PLN02835 242 SHTIQNIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFT-RQILTATAVLHYSNSRTPASG--PLPALPSGELHWSM 317 (539)
T ss_pred ccCCCceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEcccc-CCCcceEEEEEECCCCCCCCC--CCCCCCcccccccc
Confidence 999999999999999999999999998765 89999864221 233557899999764321110 011111110 11
Q ss_pred CcccccccccccccCCCCCC-------CccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCC
Q 016150 164 DHSKSFSNKIFALMGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGP 236 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~ 236 (394)
.........+......+.+. ...++++.+........|...|++||++|..|..|.|........+.|.....
T Consensus 318 ~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 397 (539)
T PLN02835 318 RQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSI 397 (539)
T ss_pred chhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCcc
Confidence 00000000000000001110 11233443322112223567899999999988999887655444344432110
Q ss_pred CCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccC
Q 016150 237 PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFN 316 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 316 (394)
. .. +.....+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+......+|
T Consensus 398 ~-~~---------~~~~~~~~~t~~~~~~~~~~Veivi~N~~------~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~n 461 (539)
T PLN02835 398 Q-SL---------PSGGPAFVATSVMQTSLHDFLEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYN 461 (539)
T ss_pred c-cC---------CCCCccccCCeEEEcCCCCEEEEEEECCC------CCCCCCCCCCccEEEEeccCCCCCcccccccC
Confidence 0 00 01111334567889999999999999986 45899999999999999999988755445678
Q ss_pred CCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEee-----ccccccCCCCCCccccc
Q 016150 317 LKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----GVETVGNIPNQALACGL 383 (394)
Q Consensus 317 ~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~-----~~~~~~~~p~~~~~c~~ 383 (394)
+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||+++|.| +.++++++|++++.||.
T Consensus 462 l~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~ 533 (539)
T PLN02835 462 LVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGK 533 (539)
T ss_pred CCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccccc
Confidence 89999999999999999999999999999999999999999999999954 34677889999999984
No 8
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=3.2e-63 Score=501.82 Aligned_cols=339 Identities=27% Similarity=0.508 Sum_probs=241.6
Q ss_pred cCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeC
Q 016150 6 IHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 85 (394)
Q Consensus 6 ~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~D 85 (394)
++.+|++||||++.+.|. ...++++|++||+|||||||+|+...+.|+|+||+|+|||+|
T Consensus 186 ~~~~d~~liNG~~~~~~~--------------------~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~D 245 (552)
T PLN02354 186 LGRPDGVLINGKSGKGDG--------------------KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEME 245 (552)
T ss_pred CCCCCeEEEeCCcCCCCC--------------------CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeC
Confidence 567899999999875431 124689999999999999999999999999999999999999
Q ss_pred CCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCC-CCC-CC
Q 016150 86 GNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITP-RWD-DY 163 (394)
Q Consensus 86 G~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~-~~~-~~ 163 (394)
|++++|+.++.|.|++||||||||++++.++ +|||++..... .......|+|+|.++.....+. .|..+ .+. ..
T Consensus 246 G~~v~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~~~--~p~~~~~~~~~~ 321 (552)
T PLN02354 246 GSHVLQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFL-KKVLTTTGIIRYEGGKGPASPE--LPEAPVGWAWSL 321 (552)
T ss_pred CcccCCcceeEEEEccCceEEEEEECCCCCC-cEEEEEecccc-CCCccEEEEEEECCCCCCCCCC--CCCCCcccccch
Confidence 9999999999999999999999999998775 99999874321 2335578999997643221111 11111 000 00
Q ss_pred CcccccccccccccCCCCCC-------CccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCC-CCCCC--
Q 016150 164 DHSKSFSNKIFALMGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLK-DAFDQ-- 233 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~-~~~~~-- 233 (394)
.....+...+......+.+. ...++++.+........+...|+|||++|..|..|.|.+...++. +.+..
T Consensus 322 ~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~ 401 (552)
T PLN02354 322 NQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDT 401 (552)
T ss_pred hhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCc
Confidence 00000000000000011110 112334433221111235678999999999999999987654332 33221
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchh
Q 016150 234 --NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKED 311 (394)
Q Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 311 (394)
..+|... .....+..++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++++
T Consensus 402 ~~~~pp~~~------------~~~~~~~~v~~~~~~~~VeiVi~n~~------~~~HP~HLHGh~F~Vlg~G~G~~~~~~ 463 (552)
T PLN02354 402 IKDNPPAKI------------TKIKIQPNVLNITFRTFVEIIFENHE------KSMQSWHLDGYSFFAVAVEPGTWTPEK 463 (552)
T ss_pred cccCCcccc------------CccccCCeeEEcCCCCEEEEEEeCCC------CCCCCCcCCCccEEEEeecCCCCCccc
Confidence 1122110 01233456789999999999999975 458999999999999999999997665
Q ss_pred hcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEe--eccccc---cCCCCCCccccccCc
Q 016150 312 EKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA--LGVETV---GNIPNQALACGLTGK 386 (394)
Q Consensus 312 ~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~--~~~~~~---~~~p~~~~~c~~~~~ 386 (394)
...+|+.||++|||+.|+++||++|||+|||||+|+|||||+.|+.+||.++|. ++++.+ .++|++.+.|+...+
T Consensus 464 ~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 464 RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccC
Confidence 567899999999999999999999999999999999999998888888877764 444434 458888999985543
No 9
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=5.2e-63 Score=498.32 Aligned_cols=333 Identities=29% Similarity=0.524 Sum_probs=235.4
Q ss_pred CCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCC
Q 016150 8 THQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 87 (394)
Q Consensus 8 ~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~ 87 (394)
.+|++||||++++. ++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||+
T Consensus 187 ~~d~~liNG~~~~~-------------------------~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~ 241 (545)
T PLN02168 187 NPDGILFNGRGPEE-------------------------TFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGT 241 (545)
T ss_pred CCCEEEEeccCCCc-------------------------ceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCe
Confidence 57999999998631 37999999999999999999999999999999999999999
Q ss_pred ccceeEeceEEecCCceEEEEEecCCCC-C--cceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 016150 88 YVQPFEVDDMDIYSGESYSVLLTTNQDP-S--YNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYD 164 (394)
Q Consensus 88 ~v~P~~~d~l~l~~GqR~DVlv~~~~~~-~--~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~ 164 (394)
+++|+.++.|.|++||||||||++++.+ | ++|||++...... ....+.|+|+|.++... +..+.+..+.+.+..
T Consensus 242 ~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~-~~~~~~ail~Y~~~~~~--~~~p~p~~p~~~~~~ 318 (545)
T PLN02168 242 YVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD-AYLGGVALIRYPNSPLD--PVGPLPLAPALHDYF 318 (545)
T ss_pred ECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC-CCcceEEEEEECCCCCC--CCCCCCCCCcccccc
Confidence 9999999999999999999999998654 3 4899998864322 34567899999754321 111112222233322
Q ss_pred cccccccccccccC----CCCCC-------CccceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCC
Q 016150 165 HSKSFSNKIFALMG----SPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQ 233 (394)
Q Consensus 165 ~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~ 233 (394)
.+..+......... .+.+. ...++++.+........+...|+|||++|..|.+|.|.+..+.+.+.+..
T Consensus 319 ~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~ 398 (545)
T PLN02168 319 SSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIP 398 (545)
T ss_pred cccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhccccccccc
Confidence 22111111110000 01111 11223332221111123467899999999999999886655443332221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhc
Q 016150 234 NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEK 313 (394)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~ 313 (394)
+. |+. .+++.....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.+..
T Consensus 399 ~~----~~~------~p~~~~~~~~~~v~~~~~~~~VeiViqn~~------~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~ 462 (545)
T PLN02168 399 GM----FPV------YPSNKTPTLGTSVVDIHYKDFYHIVFQNPL------FSLESYHIDGYNFFVVGYGFGAWSESKKA 462 (545)
T ss_pred CC----Ccc------CCCcCccccCceEEEecCCCEEEEEEeCCC------CCCCCeeeCCCceEEEECCCCCCCccccc
Confidence 11 100 000111223456789999999999999975 45899999999999999999999765555
Q ss_pred ccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEee------cc-----ccccCCCCCCcccc
Q 016150 314 KFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL------GV-----ETVGNIPNQALACG 382 (394)
Q Consensus 314 ~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~------~~-----~~~~~~p~~~~~c~ 382 (394)
.+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||++.+++ +| +.++.+|++++.||
T Consensus 463 ~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg 542 (545)
T PLN02168 463 GYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCG 542 (545)
T ss_pred cCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcccc
Confidence 78999999999999999999999999999999999999977766666655533 22 34456899999998
Q ss_pred cc
Q 016150 383 LT 384 (394)
Q Consensus 383 ~~ 384 (394)
..
T Consensus 543 ~~ 544 (545)
T PLN02168 543 KV 544 (545)
T ss_pred cC
Confidence 43
No 10
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3e-62 Score=497.75 Aligned_cols=347 Identities=35% Similarity=0.583 Sum_probs=243.4
Q ss_pred CCCeEEEccCCC--CCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeC
Q 016150 8 THQTLLINGRGQ--FNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 85 (394)
Q Consensus 8 ~~d~~LING~g~--~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~D 85 (394)
.+|++|||||+. +.|+.. ..++|+|++||+|||||||+|+.+.+.|+|+||+|+|||+|
T Consensus 165 ~~d~~liNG~~~~~~~~~~~-------------------~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~D 225 (539)
T TIGR03389 165 VSDAYTINGHPGPLYNCSSK-------------------DTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVD 225 (539)
T ss_pred ccceEEECCCcCCCCCCCCC-------------------CceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeC
Confidence 469999999964 345321 23689999999999999999999999999999999999999
Q ss_pred CCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCC---CCCCceeEEEEecCCCCCCCCCCCCCCCCCCCC
Q 016150 86 GNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRK---PATPPALTLLNYHPTSASKIPLSPPPITPRWDD 162 (394)
Q Consensus 86 G~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~---~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~ 162 (394)
|.+++|+.+++|.|++||||||+|++++.++ +||||+...... .....+.|+|+|.+......|.. +..+.+.+
T Consensus 226 G~~~~P~~~~~l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~--~~~~~~~~ 302 (539)
T TIGR03389 226 ATYTKPFKTKTIVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPIL--PTLPAYND 302 (539)
T ss_pred CcccCceEeCeEEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCC--CCCCCCCc
Confidence 9999999999999999999999999988765 999998654221 12345789999976433222211 11111222
Q ss_pred CCccccccccccccc-C--CCCCCCccceEEEEEeeeec----------c-CCeeeEEEccccCCCCCCCchhhhhccCC
Q 016150 163 YDHSKSFSNKIFALM-G--SPKPPTNFHRRLTLLNTQNT----------I-NGFTKWAINNVSLTLPPTPYLGSIKYGLK 228 (394)
Q Consensus 163 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~iN~~~~~~~~~P~l~~~~~g~~ 228 (394)
......+...+.... . .+..+...++++.+...... . .....|+|||++|..|..|+|.....++.
T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~ 382 (539)
T TIGR03389 303 TAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGIS 382 (539)
T ss_pred hhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccC
Confidence 111111111111100 0 01112234454443221110 0 12357999999999899998866655444
Q ss_pred CCCCCC---CCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCC
Q 016150 229 DAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG 305 (394)
Q Consensus 229 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g 305 (394)
+.+..+ .+|..|..+-.. ...+-....++.++.++.|++|||+|+|.+.+ ....||||||||+|||+++|.|
T Consensus 383 ~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vlg~g~g 457 (539)
T TIGR03389 383 GVFTTDFPANPPTKFNYTGTN--LPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVVGTGFG 457 (539)
T ss_pred CccccCCccCCCccccCCCCC--cccccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEEEeccC
Confidence 433221 223333211000 00000112255688999999999999997532 1458999999999999999999
Q ss_pred CCCch-hhcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeec-----cccccCCCCCCc
Q 016150 306 KFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG-----VETVGNIPNQAL 379 (394)
Q Consensus 306 ~~~~~-~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~-----~~~~~~~p~~~~ 379 (394)
.|+.. +...+|++||++|||+.|+++||++|||+|||||.|+|||||+||++.||+++|+|. .++++++|+.++
T Consensus 458 ~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~ 537 (539)
T TIGR03389 458 NFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLP 537 (539)
T ss_pred CCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCC
Confidence 88643 234689999999999999999999999999999999999999999999999999874 346788999999
Q ss_pred cc
Q 016150 380 AC 381 (394)
Q Consensus 380 ~c 381 (394)
.|
T Consensus 538 ~c 539 (539)
T TIGR03389 538 SC 539 (539)
T ss_pred CC
Confidence 99
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.4e-59 Score=471.87 Aligned_cols=338 Identities=29% Similarity=0.547 Sum_probs=234.7
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCce-EEEEE
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVE 83 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~-m~VIa 83 (394)
|.+.+|++|||||+.+.|..... .....|..++++|++||+|||||||+|+.+.+.|+|+||+ |+|||
T Consensus 167 ~~~~~d~~liNG~~~~~~~~~~~-----------~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa 235 (538)
T TIGR03390 167 WSGETEAVLLNGKSGNKSFYAQI-----------NPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE 235 (538)
T ss_pred cCCCCceEEECCccccccccccc-----------cCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE
Confidence 56778999999998876543211 0122445679999999999999999999999999999999 99999
Q ss_pred eCCCccceeEeceEEecCCceEEEEEecCCCC------CcceEEEEeecCCCCCCCceeEEEEecCCCCCCCCCCCCCCC
Q 016150 84 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDP------SYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPIT 157 (394)
Q Consensus 84 ~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~------~~~y~i~~~~~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~ 157 (394)
+||++++|+.++.|.|++||||||||++++.. .++||||+..... ++...+.|+|+|.+...++.+.. +..
T Consensus 236 ~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~-~~~~~~~aiL~Y~~~~~~~~~~~--p~~ 312 (538)
T TIGR03390 236 ADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDR-PKVYRGYAVLRYRSDKASKLPSV--PET 312 (538)
T ss_pred eCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCC-CCcceEEEEEEeCCCCCCCCCCC--CCC
Confidence 99999999999999999999999999998752 2599999876543 23445789999965433222211 111
Q ss_pred CCC---CCCCcccccccccccccCCC--CCCCccceEEEEEeeeec--cCCeeeEEEccccCCC--CCCCchhhhhccCC
Q 016150 158 PRW---DDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNT--INGFTKWAINNVSLTL--PPTPYLGSIKYGLK 228 (394)
Q Consensus 158 ~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~iN~~~~~~--~~~P~l~~~~~g~~ 228 (394)
+.. ........+....+.....+ .+....++++.+...+.. ..+...|++||++|.. +..|+|.....+..
T Consensus 313 ~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~ 392 (538)
T TIGR03390 313 PPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGL 392 (538)
T ss_pred CCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCC
Confidence 110 00000000100111111000 112345666655443321 2356789999999985 68899887754311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCC--CCCCCCCCeeecCCCeEEEeecCCC
Q 016150 229 DAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR--PNLSEIHPWHLHGHDFWVLGRGEGK 306 (394)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~--~~~~~~HP~HlHG~~F~Vl~~g~g~ 306 (394)
.. .+ .|.... ........+.++.++.|++|||+|+|.+.+. ......||||||||+||||++|.|.
T Consensus 393 ~~----~~--~~~~~~------~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~ 460 (538)
T TIGR03390 393 PA----TP--NYTAAL------ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGE 460 (538)
T ss_pred Cc----CC--Cccccc------ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccc
Confidence 00 00 010000 0000111234678999999999999974210 0124689999999999999999999
Q ss_pred CCch-hhcccCCCCCCCcceeEec----------CCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeecc
Q 016150 307 FTKE-DEKKFNLKNPPLKNTAVIF----------PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 307 ~~~~-~~~~~~~~~p~~rDTv~v~----------~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
|++. +...+++.||++|||+.|+ ++||++|||++||||.|+|||||+||+.+||+++|.|..
T Consensus 461 ~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 461 YNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred cCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 8753 2345788999999999996 789999999999999999999999999999999998753
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-58 Score=461.49 Aligned_cols=349 Identities=37% Similarity=0.605 Sum_probs=255.7
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEe
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 84 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~ 84 (394)
++.++|++||||++.+. ..| .++++|+|||+|||||||++....+.|+|+||+|+|||+
T Consensus 188 ~p~~~D~~~iNg~~g~~------------~~~---------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~ 246 (563)
T KOG1263|consen 188 LPNPSDGVLINGRSGFL------------YNC---------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEV 246 (563)
T ss_pred CCCCCCceEECCCCCcc------------cCc---------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEe
Confidence 45669999999998642 111 258999999999999999999999999999999999999
Q ss_pred CCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCCCC---CCCceeEEEEecCCCCCC-CCCCCCCCCCCC
Q 016150 85 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASK-IPLSPPPITPRW 160 (394)
Q Consensus 85 DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~---~~~~~~~il~y~~~~~~~-~p~~~~~~~~~~ 160 (394)
||.+++|..+++|.|+|||||||||++++.++ +|||++....... ......++|+|.+..... ......+..+..
T Consensus 247 Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~ 325 (563)
T KOG1263|consen 247 DGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPG 325 (563)
T ss_pred cceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcc
Confidence 99999999999999999999999999999887 9999987653211 145677899997622111 110000111222
Q ss_pred CCCCcccccccccccc----cCCCCCCCc-------cceEEEEEeeeeccCCeeeEEEccccCCCCCCCchhhhhccCCC
Q 016150 161 DDYDHSKSFSNKIFAL----MGSPKPPTN-------FHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKD 229 (394)
Q Consensus 161 ~~~~~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~ 229 (394)
.+...+..+...+... ...+.|... ..+.+.+.......++...++||+++|..|++|.+.+..+...+
T Consensus 326 ~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~ 405 (563)
T KOG1263|consen 326 NDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIP 405 (563)
T ss_pred cCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCC
Confidence 2222222222222211 111111111 11222232332233568899999999999999888776654333
Q ss_pred -CCCCC---CCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCC
Q 016150 230 -AFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG 305 (394)
Q Consensus 230 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g 305 (394)
.+..+ .|+..|... .++.+++++.++++++||++|+|.+.+ ....||||||||+|+|+++|.|
T Consensus 406 ~~~~~d~p~~P~~~~~~~----------~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLHG~~F~Vvg~g~G 472 (563)
T KOG1263|consen 406 GYFTNDFPDKPPIKFDYT----------GPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLHGYNFYVVGYGFG 472 (563)
T ss_pred ccccCccCCCCccccCCc----------cccccceEEEeecCCEEEEEEeCCccc---cCCCCccceeceEEEEEEeccc
Confidence 33221 222222110 035678899999999999999999865 3567999999999999999999
Q ss_pred CCCc--hhhcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeecccc-----ccCCCCCC
Q 016150 306 KFTK--EDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVET-----VGNIPNQA 378 (394)
Q Consensus 306 ~~~~--~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~~~-----~~~~p~~~ 378 (394)
.|++ +....+|+.+|+.||||.|+|+||++|||.|||||.|++|||+++|+..||.++|.|...+ +..+|.+.
T Consensus 473 ~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~ 552 (563)
T KOG1263|consen 473 NWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNL 552 (563)
T ss_pred ccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCc
Confidence 9987 3337799999999999999999999999999999999999999999999999999987432 34689999
Q ss_pred ccccccCccc
Q 016150 379 LACGLTGKRF 388 (394)
Q Consensus 379 ~~c~~~~~~~ 388 (394)
+.||..+...
T Consensus 553 ~~cg~~~~~~ 562 (563)
T KOG1263|consen 553 PKCGRASGIP 562 (563)
T ss_pred ccccccCCcC
Confidence 9999877643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.3e-44 Score=367.33 Aligned_cols=251 Identities=25% Similarity=0.363 Sum_probs=175.8
Q ss_pred ceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEee
Q 016150 46 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 125 (394)
Q Consensus 46 ~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~ 125 (394)
++++.+++|++|||||||+|+++.++|+|+||+|+|||+||++|+|+.++.|.|++||||||||++++. +.|+|++..
T Consensus 259 ~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~--g~~~i~a~~ 336 (587)
T TIGR01480 259 NWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGD--DAFTIFAQD 336 (587)
T ss_pred CceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCC--ceEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999998642 389999866
Q ss_pred cCCCCCCCceeEEEEecCCCCCCCCCCCCCCCCCCCCCCc----------------------c-c-------c---c---
Q 016150 126 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH----------------------S-K-------S---F--- 169 (394)
Q Consensus 126 ~~~~~~~~~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~----------------------~-~-------~---~--- 169 (394)
.++ ...++++|++........|...+.......++.. . . . .
T Consensus 337 ~~~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (587)
T TIGR01480 337 SDR---TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMD 413 (587)
T ss_pred cCC---CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccccccc
Confidence 543 3456778887543222222111111001101000 0 0 0 0
Q ss_pred ------------------------------------ccccc--cccCCC---CCCCccceEEEEEeeeeccCCeeeEEEc
Q 016150 170 ------------------------------------SNKIF--ALMGSP---KPPTNFHRRLTLLNTQNTINGFTKWAIN 208 (394)
Q Consensus 170 ------------------------------------~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iN 208 (394)
..+.+ ...... .+....++.+.+.-..+ + ....|+||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~-m-~~~~wtiN 491 (587)
T TIGR01480 414 ASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN-M-ERFAWSFD 491 (587)
T ss_pred ccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC-C-ceeEEEEC
Confidence 00000 000000 00112333333321111 1 13458888
Q ss_pred cccCCCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCC
Q 016150 209 NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIH 288 (394)
Q Consensus 209 ~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~H 288 (394)
|..|... ..+.++.|++|+|+|.|.+ .+.|
T Consensus 492 G~~~~~~--------------------------------------------~pl~v~~Gervri~l~N~t------~~~H 521 (587)
T TIGR01480 492 GEAFGLK--------------------------------------------TPLRFNYGERLRVVLVNDT------MMAH 521 (587)
T ss_pred CccCCCC--------------------------------------------CceEecCCCEEEEEEECCC------CCCc
Confidence 8764310 1267899999999999987 4699
Q ss_pred CeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEee
Q 016150 289 PWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 289 P~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
|||||||.|+++..+ |.+ +.++||+.|+|++++.++|+++|||.|+||||++.|++.|||..|.+
T Consensus 522 pmHlHG~~f~v~~~~-G~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 522 PIHLHGMWSELEDGQ-GEF------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred ceeEcCceeeeecCC-Ccc------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999998653 322 36899999999999999999999999999999999999999999875
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.8e-43 Score=354.94 Aligned_cols=239 Identities=22% Similarity=0.332 Sum_probs=157.0
Q ss_pred EEEecCCCeEEEEEeecCCcceEEEEE-eCceEEEEEeCCCcc-ceeEeceEEecCCceEEEEEecCCCCCcceEEEEee
Q 016150 48 ILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 125 (394)
Q Consensus 48 ~~~v~~g~~yRlRlINa~~~~~~~l~i-d~h~m~VIa~DG~~v-~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~ 125 (394)
.+.++ +++|||||||+|+++.+.|++ ++|+|+|||+||+++ +|+.++.|.|+|||||||+|++++ +++|++++..
T Consensus 224 ~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~ 300 (523)
T PRK10965 224 QHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLP 300 (523)
T ss_pred eeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEec
Confidence 45664 579999999999999999998 799999999999997 899999999999999999999976 3478888753
Q ss_pred cCCCC----CCCceeEEEEecCCCCC---CCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCccceEEEEEeee--
Q 016150 126 RGRKP----ATPPALTLLNYHPTSAS---KIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQ-- 196 (394)
Q Consensus 126 ~~~~~----~~~~~~~il~y~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 196 (394)
..... .....+.++++...... ..|.... ..... +.+.....+++.+....
T Consensus 301 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~----~~~~~----------------~~~~~~~~r~~~l~~~~~~ 360 (523)
T PRK10965 301 VSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLA----SLPAL----------------PSLEGLTVRRLQLSMDPRL 360 (523)
T ss_pred ccCcccccccCCCceeEEEEeccCcCCCCcCChhhc----cCCCC----------------CcccccceeEEEEeecccc
Confidence 32110 01113345555432111 1111100 00000 00000011222221100
Q ss_pred --------------------------ecc--------------CC--e---eeEEEccccCCCCCCCchhhhhccCCCCC
Q 016150 197 --------------------------NTI--------------NG--F---TKWAINNVSLTLPPTPYLGSIKYGLKDAF 231 (394)
Q Consensus 197 --------------------------~~~--------------~~--~---~~~~iN~~~~~~~~~P~l~~~~~g~~~~~ 231 (394)
..+ .+ . ..|+|||.+|...
T Consensus 361 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~---------------- 424 (523)
T PRK10965 361 DMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN---------------- 424 (523)
T ss_pred chhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCC----------------
Confidence 000 00 0 1135666554311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchh
Q 016150 232 DQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKED 311 (394)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 311 (394)
...+.++.|++++|+|.|.+. .+.|||||||+.|||++++..+.
T Consensus 425 ---------------------------~~~~~~~~G~~e~w~i~N~~~-----~~~Hp~HlHg~~F~Vl~~~g~~~---- 468 (523)
T PRK10965 425 ---------------------------KPMFAAKKGQYERWVISGVGD-----MMLHPFHIHGTQFRILSENGKPP---- 468 (523)
T ss_pred ---------------------------CcceecCCCCEEEEEEEeCCC-----CCccCeEEeCcEEEEEEecCCCC----
Confidence 112578999999999999862 25899999999999999964322
Q ss_pred hcccCCCCCCCcceeEecCCcEEE--EEEE--cCCceeeEeeeccchhhhcCceEEEee
Q 016150 312 EKKFNLKNPPLKNTAVIFPYGWTA--LRFV--ADNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 312 ~~~~~~~~p~~rDTv~v~~~g~v~--irf~--adnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
....+.|||||.|++ +.+. ++|+ ++++|.|+||||||+|+|.|||..|.|
T Consensus 469 ----~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 469 ----AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred ----CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 123468999999987 5554 4554 467889999999999999999999976
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=3.1e-43 Score=351.58 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=156.1
Q ss_pred eEEEecCCCeEEEEEeecCCcceEEEEE-eCceEEEEEeCCCcc-ceeEeceEEecCCceEEEEEecCCCCCcceEEEEe
Q 016150 47 QILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 124 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~~~~~~~l~i-d~h~m~VIa~DG~~v-~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~ 124 (394)
+.++|++| +|||||||+|+++.+.|+| ++|+|+|||+||+++ +|+.++.|.|+|||||||+|++++ ++.+.+.+.
T Consensus 220 p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~ 296 (471)
T PRK10883 220 PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAG 296 (471)
T ss_pred CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECC
Confidence 36889885 8999999999999999999 899999999998876 899999999999999999999975 336766653
Q ss_pred ecCCCC----C-CC-----ceeEEEEecCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCccceEEEEEe
Q 016150 125 VRGRKP----A-TP-----PALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLN 194 (394)
Q Consensus 125 ~~~~~~----~-~~-----~~~~il~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
...... . .. ....+++........... ...| ..+... +.......++..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p------------~~l~~~---~~~~~~~~~~~~~~l 358 (471)
T PRK10883 297 EAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVT---DNLP------------MRLLPD---EIMEGSPIRSREISL 358 (471)
T ss_pred CccccccccccccCCccccccceeEEEEccccccCCC---CcCC------------hhhcCC---CCCCCCCcceEEEEe
Confidence 111000 0 00 011222222110000000 0000 000000 001111122222211
Q ss_pred eeeccCCeeeEEEccccCCCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEE
Q 016150 195 TQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVIL 274 (394)
Q Consensus 195 ~~~~~~~~~~~~iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi 274 (394)
. + ..|.|||..|.... ..+.++.|++++|+|
T Consensus 359 ~-----~-~~~~INg~~~~~~~-------------------------------------------~~~~~~~g~~e~W~~ 389 (471)
T PRK10883 359 G-----D-DLPGINGALWDMNR-------------------------------------------IDVTAQQGTWERWTV 389 (471)
T ss_pred c-----C-CcCccCCcccCCCc-------------------------------------------ceeecCCCCEEEEEE
Confidence 1 1 13679998875321 014678999999999
Q ss_pred ecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcCCce----eeEeee
Q 016150 275 QNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPG----AWAFHC 350 (394)
Q Consensus 275 ~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG----~w~~HC 350 (394)
.|. +.||||||||.|||++++..... ..+..|||||.|+ +.+.|+++.+++| .|||||
T Consensus 390 ~n~--------~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HC 451 (471)
T PRK10883 390 RAD--------MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYS 451 (471)
T ss_pred ECC--------CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeec
Confidence 885 37999999999999999643221 1124799999996 4688999988877 899999
Q ss_pred ccchhhhcCceEEEeecc
Q 016150 351 HIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 351 Hil~H~~~GM~~~~~~~~ 368 (394)
|||+|+|.|||..|.|.+
T Consensus 452 HiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 452 QTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ccccccccCCccCeEEec
Confidence 999999999999998743
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-35 Score=296.19 Aligned_cols=249 Identities=27% Similarity=0.367 Sum_probs=160.2
Q ss_pred EEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecC
Q 016150 48 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRG 127 (394)
Q Consensus 48 ~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~ 127 (394)
++...++.+|||||+|+++.+.+.+++.+++|+||++||.+++|..++.+.|+|||||||+|+++. ++.+.+.+.. .
T Consensus 200 p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~--~~~~~l~~~~-~ 276 (451)
T COG2132 200 PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND--GGAVTLTALG-E 276 (451)
T ss_pred ceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC--CCeEEEEecc-c
Confidence 355556667999999999999999999999999999999999999999999999999999999987 3367776543 1
Q ss_pred CCCCCCceeEEEEecCCCCCCCCCCCC-CCCCCCCCCCcccccccccccccCCCCCCCccceEEEEEeeeeccCCeeeEE
Q 016150 128 RKPATPPALTLLNYHPTSASKIPLSPP-PITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWA 206 (394)
Q Consensus 128 ~~~~~~~~~~il~y~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (394)
.... ...+............+.... ...+.-...+... ........ ..+....+....+.. ..+...|.
T Consensus 277 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~--~~~~~~~~~~~~l~~----~~~~~~~~ 346 (451)
T COG2132 277 DMPD--TLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAP--VGLLVTIL--VEPGPNRDTDFHLIG----GIGGYVWA 346 (451)
T ss_pred cCCc--eeeeeeccccccccccccccccccCCCcchhhccc--cccchhhc--CCCcccccccchhhc----cccccccc
Confidence 1111 111111111100000000000 0000000000000 00000000 000000011111100 01123466
Q ss_pred EccccCCCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceEEccCCCEEEEEEecCCcCCCCCCC
Q 016150 207 INNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSE 286 (394)
Q Consensus 207 iN~~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~ 286 (394)
+|+..|... ...+.++.|++++|+|.|.+ .+
T Consensus 347 ~n~~~~~~~-------------------------------------------~~~~~~~~G~~~~~~i~n~~------~~ 377 (451)
T COG2132 347 INGKAFDDN-------------------------------------------RVTLIAKAGTRERWVLTNDT------PM 377 (451)
T ss_pred ccCccCCCC-------------------------------------------cCceeecCCCEEEEEEECCC------CC
Confidence 666554310 12367899999999999987 36
Q ss_pred CCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEee
Q 016150 287 IHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 287 ~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
.|||||||+.|+|++.+.. ...+.+.||||+.+.++..++|+|++++||.|+||||+++|++.|||..+.+
T Consensus 378 ~HP~HlHg~~F~v~~~~~~---------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v 448 (451)
T COG2132 378 PHPFHLHGHFFQVLSGDAP---------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGV 448 (451)
T ss_pred ccCeEEcCceEEEEecCCC---------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEe
Confidence 9999999999999998711 1224579999999999999999999999999999999999999999999876
Q ss_pred c
Q 016150 367 G 367 (394)
Q Consensus 367 ~ 367 (394)
.
T Consensus 449 ~ 449 (451)
T COG2132 449 V 449 (451)
T ss_pred c
Confidence 4
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=2.1e-31 Score=224.99 Aligned_cols=107 Identities=43% Similarity=0.815 Sum_probs=96.1
Q ss_pred cccceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEE
Q 016150 257 LGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTAL 336 (394)
Q Consensus 257 ~~~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~i 336 (394)
.+...+.++.|++++|+|+|.+ ...|||||||++|+|++++.+.+.......++..++.||||+.|+++++++|
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~------~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNG------SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECT------TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred CCcceEEEeCCCEEEEEEECCC------CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEE
Confidence 3456899999999999999976 4599999999999999998877655555678889999999999999999999
Q ss_pred EEEcCCceeeEeeeccchhhhcCceEEEeeccc
Q 016150 337 RFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 369 (394)
Q Consensus 337 rf~adnpG~w~~HCHil~H~~~GM~~~~~~~~~ 369 (394)
||+++|||.|+||||+++|++.|||++|+|.++
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 999999999999999999999999999999764
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.96 E-value=1.1e-28 Score=213.15 Aligned_cols=124 Identities=36% Similarity=0.677 Sum_probs=104.2
Q ss_pred ccCCCCeEEEccCCCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEe
Q 016150 5 RIHTHQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 84 (394)
Q Consensus 5 ~~~~~d~~LING~g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~ 84 (394)
|++.||++||||+++++|+.+.. ..+..+++.+++|++|||||||+|+.+.+.|+|+||+|+|||+
T Consensus 32 ~~~~~d~~liNG~~~~~~~~~~~--------------~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~ 97 (159)
T PF00394_consen 32 MPPIPDSILINGKGRFDCSSADY--------------TGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAA 97 (159)
T ss_dssp CTSSCSEEEETTBTCBTTCTTGS--------------TTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEE
T ss_pred CCcCCcEEEECCccccccccccc--------------cccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeee
Confidence 57889999999999999986432 1335679999999999999999999999999999999999999
Q ss_pred CCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEeecCC---CCCCCceeEEEEecC
Q 016150 85 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGR---KPATPPALTLLNYHP 143 (394)
Q Consensus 85 DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~---~~~~~~~~~il~y~~ 143 (394)
||++++|+.+++|.|++||||||+|++++. .++|||++..... ......+.++|+|..
T Consensus 98 DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~-~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 98 DGVPVEPYKVDTLVLAPGQRYDVLVTADQP-PGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp TTEEEEEEEESBEEE-TTEEEEEEEEECSC-SSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred ccccccccccceEEeeCCeEEEEEEEeCCC-CCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 999999999999999999999999999884 4599999863211 223456789999954
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.64 E-value=4.5e-16 Score=148.22 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=88.3
Q ss_pred CCCCeEEEccC-CCCCCCcccccCCCCccccccCCCCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeC
Q 016150 7 HTHQTLLINGR-GQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEAD 85 (394)
Q Consensus 7 ~~~d~~LING~-g~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~D 85 (394)
+.+|.+||||| +++. +.+.+++|+++||||||++..+.+.|++.+|.+++|+.|
T Consensus 186 ~~~~~~~iNG~~~~~~-------------------------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~D 240 (311)
T TIGR02376 186 LTPTHVVFNGAVGALT-------------------------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVT 240 (311)
T ss_pred CCCCEEEECCccCCCC-------------------------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEEC
Confidence 55789999999 3321 246899999999999999999999999999999999999
Q ss_pred CCccceeE--eceEEecCCceEEEEEecCCCCCcceEEEEeecCCCCCCCceeEEEEecC
Q 016150 86 GNYVQPFE--VDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHP 143 (394)
Q Consensus 86 G~~v~P~~--~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~il~y~~ 143 (394)
|+++.|.. ++++.|+|||||||+|++++ +| .|+++........ .....++|.|.+
T Consensus 241 G~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~-~~g~~~~i~~~g 297 (311)
T TIGR02376 241 GKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF-EKGAAAQVKVEG 297 (311)
T ss_pred CcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH-hCCCEEEEEECC
Confidence 99997644 89999999999999999987 44 8999865332211 223678899854
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.42 E-value=6.4e-11 Score=112.98 Aligned_cols=91 Identities=15% Similarity=0.029 Sum_probs=75.1
Q ss_pred EEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCC-CcceeEecCCcEEEEEEEc
Q 016150 262 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPP-LKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 262 ~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~v~~~g~v~irf~a 340 (394)
+.++.|++++|.|.|.+. ...+.||++|++|.++....+... .+. ..||+.|.||+.+.|.|++
T Consensus 204 ~~v~~G~~~RlRiiNa~~-----~~~~~~~~~g~~~~~v~~DG~~~~----------~~~~~~~~~~i~PG~R~dv~v~~ 268 (311)
T TIGR02376 204 NALTAGVGERVLFVHSQP-----NRDSRPHLIGGHGDYVWVTGKFAN----------PPNRDVETWFIPGGSAAAALYTF 268 (311)
T ss_pred cccccCCcEEEEEEcCCC-----CCCCCCeEecCCceEEEECCcccC----------CCCCCcceEEECCCceEEEEEEe
Confidence 356889999999999862 357899999999999998433221 122 3799999999999999999
Q ss_pred CCceeeEeeeccchhh-hcCceEEEeec
Q 016150 341 DNPGAWAFHCHIEPHF-HIGMGVVLALG 367 (394)
Q Consensus 341 dnpG~w~~HCHil~H~-~~GM~~~~~~~ 367 (394)
+.||.|.+|||...|. ..|+++++.+.
T Consensus 269 ~~pG~y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 269 EQPGVYAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred CCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence 9999999999999997 77999998664
No 21
>PLN02604 oxidoreductase
Probab=99.07 E-value=1.6e-09 Score=111.63 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=68.8
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.++++.|+++++.+.|... ...|+||+||+.. .+. .|. | -........|+||+...++|++
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~-----~~~~~iH~HG~~~--~~~---~~~--D-------G~~~~tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLL-----TENVAIHWHGIRQ--IGT---PWF--D-------GTEGVTQCPILPGETFTYEFVV 116 (566)
T ss_pred cEEEECCCEEEEEEEeCCC-----CCCCCEEeCCCCC--CCC---ccc--c-------CCCccccCccCCCCeEEEEEEc
Confidence 3788999999999999741 3589999999942 111 110 0 0111234578999999999999
Q ss_pred CCceeeEeeeccchhhhcCceEEEeecc
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
+++|.|.||||...|.+.||+..|++.+
T Consensus 117 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 144 (566)
T PLN02604 117 DRPGTYLYHAHYGMQREAGLYGSIRVSL 144 (566)
T ss_pred CCCEEEEEeeCcHHHHhCCCeEEEEEEe
Confidence 9999999999999999999998888764
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.79 E-value=2.1e-08 Score=81.69 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=67.5
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.++++.|+++++.+.|.. ..++.+|+||...---...+|.. ... .-.|.||+..+.+|+
T Consensus 26 PtI~v~~Gd~v~i~~~N~l------~~~~siH~HG~~~~~~~~~DG~~-------~~~-------~~~i~pG~~~~Y~~~ 85 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL------DEPTSIHWHGLHQPPSPWMDGVP-------GVT-------QCPIAPGESFTYEFT 85 (117)
T ss_dssp EEEEEETTEEEEEEEEEES------SSGBSEEEETSBSTTGGGGSGGT-------TTS-------GSSBSTTEEEEEEEE
T ss_pred CEEEEEcCCeeEEEEEecc------ccccccccceeeeeeeeecCCcc-------ccc-------ceeEEeecceeeeEe
Confidence 5799999999999999975 56899999997541100011100 000 123889999999999
Q ss_pred cCC-ceeeEeeeccchhhhcCceEEEeeccc
Q 016150 340 ADN-PGAWAFHCHIEPHFHIGMGVVLALGVE 369 (394)
Q Consensus 340 adn-pG~w~~HCHil~H~~~GM~~~~~~~~~ 369 (394)
++. +|.|.||||...|..+||...|++.++
T Consensus 86 ~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 86 ANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp ESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 988 999999999999988999999888653
No 23
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.64 E-value=4.5e-07 Score=93.25 Aligned_cols=89 Identities=25% Similarity=0.264 Sum_probs=67.7
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.++++.|+.+++.+.|... ...+.+|+||.+. ... .|. | ...--..-.|+||+....+|++
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~-----~~~t~iHwHGl~~--~~~---~~~--D-------G~~~vtq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLH-----TEGVVIHWHGIRQ--IGT---PWA--D-------GTAGVTQCAINPGETFIYNFVV 93 (541)
T ss_pred eEEEEcCCEEEEEEEECCC-----CCCccEEecCcCC--cCC---ccc--C-------CCCccccCCcCCCCEEEEEEEc
Confidence 4789999999999999741 3579999999952 111 110 0 0011123368999999999999
Q ss_pred CCceeeEeeeccchhhhcCceEEEeecc
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
+.+|.|.||||...|...||...|++.+
T Consensus 94 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 121 (541)
T TIGR03388 94 DRPGTYFYHGHYGMQRSAGLYGSLIVDV 121 (541)
T ss_pred CCCEEEEEEecchHHhhccceEEEEEec
Confidence 9999999999999999999998888764
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.53 E-value=7.4e-06 Score=84.35 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=63.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++++|+|.|.+. ...+-|||+||.|+|++.. |.+ -.|...|++.|.+|+.+.|.+++
T Consensus 188 ~i~v~~G~~~RlRlINa~~-----~~~~~~~idgH~~~VIa~D-G~~----------~~P~~~~~l~i~~GqRydVlv~a 251 (539)
T TIGR03389 188 KLTVEPGKTYLLRIINAAL-----NDELFFAIANHTLTVVEVD-ATY----------TKPFKTKTIVIGPGQTTNVLLTA 251 (539)
T ss_pred EEEECCCCEEEEEEEeccC-----CceEEEEECCCeEEEEEeC-Ccc----------cCceEeCeEEecCCCEEEEEEEC
Confidence 5789999999999999863 4568899999999999985 332 24677899999999999999999
Q ss_pred CC-ceeeEeeecc
Q 016150 341 DN-PGAWAFHCHI 352 (394)
Q Consensus 341 dn-pG~w~~HCHi 352 (394)
+. +|.|.++-+.
T Consensus 252 ~~~~g~y~i~~~~ 264 (539)
T TIGR03389 252 DQSPGRYFMAARP 264 (539)
T ss_pred CCCCceEEEEEec
Confidence 76 8988887654
No 25
>PLN02835 oxidoreductase
Probab=98.46 E-value=2.4e-05 Score=80.17 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=59.4
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++++|+|.|.+. ....-||+.||.|.|++...... .|...|++.|.+|+...|.+++
T Consensus 203 ~~~v~~G~~yRlRliNa~~-----~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~ 266 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVGL-----STSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTL 266 (539)
T ss_pred eEEECCCCEEEEEEEEcCC-----CccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEc
Confidence 3678999999999999873 45799999999999999854322 2456899999999999999997
Q ss_pred CC-ceeeEee
Q 016150 341 DN-PGAWAFH 349 (394)
Q Consensus 341 dn-pG~w~~H 349 (394)
+. +|.|.++
T Consensus 267 ~~~~g~y~i~ 276 (539)
T PLN02835 267 NQSPKDYYIV 276 (539)
T ss_pred CCCCCcEEEE
Confidence 64 6877665
No 26
>PLN02792 oxidoreductase
Probab=98.31 E-value=4.1e-05 Score=78.32 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=60.0
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++++|+|.|.+. ...+-|++.||.|.|++...... .|...|++.|.+|+.+.|.+++
T Consensus 194 ~~~v~~Gk~yRlRliNa~~-----~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 194 SITVDKGKTYRFRISNVGL-----QTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred eEEECCCCEEEEEEEEcCC-----CceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEc
Confidence 4788999999999999873 45789999999999999853322 3556799999999999999998
Q ss_pred CC-ceeeEeee
Q 016150 341 DN-PGAWAFHC 350 (394)
Q Consensus 341 dn-pG~w~~HC 350 (394)
+. +|.|.+.-
T Consensus 258 ~~~~g~Y~i~a 268 (536)
T PLN02792 258 DQPPQNYSIVV 268 (536)
T ss_pred CCCCceEEEEE
Confidence 76 57666553
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=98.30 E-value=6.4e-05 Score=77.30 Aligned_cols=75 Identities=8% Similarity=0.089 Sum_probs=62.0
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++++|+|.|.+. ....-||+.||.|.|++...... .|...|++.|.+|+...|.+++
T Consensus 208 ~~~v~~Gk~yRlRiINa~~-----~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 208 LFTMKPGKTYRYRICNVGL-----KSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred EEEECCCCEEEEEEEecCC-----CceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEEC
Confidence 4789999999999999874 45789999999999999853322 3456799999999999999998
Q ss_pred CC-ceeeEeeec
Q 016150 341 DN-PGAWAFHCH 351 (394)
Q Consensus 341 dn-pG~w~~HCH 351 (394)
+. +|.|.+.-.
T Consensus 272 ~~~~g~Y~i~a~ 283 (552)
T PLN02354 272 NQAPKDYYMVAS 283 (552)
T ss_pred CCCCCcEEEEEe
Confidence 75 788777655
No 28
>PLN02991 oxidoreductase
Probab=98.18 E-value=0.00013 Score=74.84 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=58.0
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++++|+|.|.+. ...+-|+|.||.|+|++.. |.+ ..|...|++.|.+|+..-|.+++
T Consensus 203 ~~~v~~G~~yRlRiINa~~-----~~~~~~~idgH~~tVIa~D-G~~----------~~p~~~~~l~i~~GQRydvlv~a 266 (543)
T PLN02991 203 TLNIEPGKTYRLRISNVGL-----QNSLNFRIQNHTMKLVEVE-GTH----------TIQTPFSSLDVHVGQSYSVLITA 266 (543)
T ss_pred eEEECCCCEEEEEEEeccC-----CeeEEEEECCCEEEEEEeC-Ccc----------ccceeeeEEEEcCCcEEEEEEEC
Confidence 4788999999999999873 3468999999999999984 322 23567899999999999999998
Q ss_pred CC-ce-eeEe
Q 016150 341 DN-PG-AWAF 348 (394)
Q Consensus 341 dn-pG-~w~~ 348 (394)
+. +| .|+.
T Consensus 267 ~~~~~~y~i~ 276 (543)
T PLN02991 267 DQPAKDYYIV 276 (543)
T ss_pred CCCCCcEEEE
Confidence 76 45 4443
No 29
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.17 E-value=7e-06 Score=70.77 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=71.3
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
..+.++.|++++|+|.|.+. ...|.||++||.|+|++...... .|...|++.|.+|+.+.|.++
T Consensus 60 ~~~~v~~g~~~rlRliNa~~-----~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINAGA-----STSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp GEEEEETTTEEEEEEEEESS-----S-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEE
T ss_pred ceEEEcCCcEEEEEEEeccC-----CeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEE
Confidence 46899999999999999863 45899999999999999843221 267889999999999999999
Q ss_pred cCC-ceeeEeee----ccchhhhcCceEEE
Q 016150 340 ADN-PGAWAFHC----HIEPHFHIGMGVVL 364 (394)
Q Consensus 340 adn-pG~w~~HC----Hil~H~~~GM~~~~ 364 (394)
++. +|.|.+++ +...+...|+..-+
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~ai 153 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAI 153 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEE
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEE
Confidence 887 99999999 55666677765443
No 30
>PLN02191 L-ascorbate oxidase
Probab=98.17 E-value=1.2e-05 Score=83.20 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=67.4
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.++++.|+++++.+.|.- ....+.+|.||.+.. +. .|. |. ..---.-.|+||+..+.+|+
T Consensus 54 P~i~~~~Gd~v~v~v~N~l-----~~~~tsiHwHGl~~~--~~---~~~--DG-------v~gvtq~pI~PG~s~~Y~f~ 114 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL-----TTEGLVIHWHGIRQK--GS---PWA--DG-------AAGVTQCAINPGETFTYKFT 114 (574)
T ss_pred CeEEEEcCCEEEEEEEECC-----CCCCccEECCCCCCC--CC---ccc--cC-------CCccccCCcCCCCeEEEEEE
Confidence 4689999999999999973 135799999999631 10 010 00 00001134899999999999
Q ss_pred cCCceeeEeeeccchhhhcCceEEEeec
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMGVVLALG 367 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~~~~~~~ 367 (394)
++.+|.|.||||...+...||...|++.
T Consensus 115 ~~~~GT~wYHsH~~~q~~~Gl~G~liV~ 142 (574)
T PLN02191 115 VEKPGTHFYHGHYGMQRSAGLYGSLIVD 142 (574)
T ss_pred CCCCeEEEEeeCcHHHHhCCCEEEEEEc
Confidence 9999999999999999999999888874
No 31
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.17 E-value=0.00012 Score=75.29 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=56.7
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCC-eEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHD-FWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
.+.++.|++++|+|.|.+. ....-|+|.||. |+|++.... + ..|...|++.|.+|+.+-|.++
T Consensus 199 ~~~v~~G~~yRlRlINa~~-----~~~~~~~idgH~~~~VIa~DG~-~----------~~P~~v~~l~l~~GqRydVlv~ 262 (538)
T TIGR03390 199 VIDVEPGKTYRLRFIGATA-----LSLISLGIEDHENLTIIEADGS-Y----------TKPAKIDHLQLGGGQRYSVLFK 262 (538)
T ss_pred EEEECCCCEEEEEEEccCC-----ceEEEEEECCCCeEEEEEeCCC-C----------CCceEeCeEEEccCCEEEEEEE
Confidence 5789999999999999873 346789999999 999998543 3 3577889999999999999999
Q ss_pred cCCc
Q 016150 340 ADNP 343 (394)
Q Consensus 340 adnp 343 (394)
++.+
T Consensus 263 ~~~~ 266 (538)
T TIGR03390 263 AKTE 266 (538)
T ss_pred CCCc
Confidence 8763
No 32
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.13 E-value=1.7e-05 Score=67.27 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=57.8
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEE--EeecCCCCCchhhcccCCCCCCCcceeEecC---C--c
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWV--LGRGEGKFTKEDEKKFNLKNPPLKNTAVIFP---Y--G 332 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~V--l~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~---~--g 332 (394)
+.++++.|++|++++.|.+. +..|.|-||.+.-.. ...-.| .+..-..-.+|+ + +
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~-----~~~H~~~I~~~g~~~~~~p~mdG-------------~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT-----DSGHNFDISKRGPPYPYMPGMDG-------------LGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC-----CccccEEeecCCCccccccccCC-------------CCccccCcccCCCCCCccc
Confidence 45889999999999999852 246666665432110 000000 011111222232 2 2
Q ss_pred EEEEEEEcCCceeeEeeeccchhhhcCceEEEee
Q 016150 333 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 333 ~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
+..+.|+++.+|.+.||||+..|...||...+++
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4678888889999999999999999999988875
No 33
>PRK10883 FtsI repressor; Provisional
Probab=98.00 E-value=0.0006 Score=69.04 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=58.0
Q ss_pred EEccCCCEEEEEEecCCcCCCCCCCCCCeee-cCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 262 YMLGLNTTVDVILQNANAIRPNLSEIHPWHL-HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 262 ~~~~~g~~ve~vi~N~~~~~~~~~~~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
+.++.+ +++|+|.|.+. ....-+++ +||.|+|++...|.. ..|...|.+.|.||+.+.|.+++
T Consensus 222 ~~v~~~-~~RlRliNas~-----~~~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd~ 285 (471)
T PRK10883 222 VEVSRG-WVRLRLLNASN-----ARRYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVDM 285 (471)
T ss_pred EEecCC-EEEEEEEEccC-----CceEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEEC
Confidence 566654 78999999863 34567777 899999999976654 34666799999999999999998
Q ss_pred CCceeeEeee
Q 016150 341 DNPGAWAFHC 350 (394)
Q Consensus 341 dnpG~w~~HC 350 (394)
+..+.+.+++
T Consensus 286 ~~~~~~~l~~ 295 (471)
T PRK10883 286 SNGDEVSITA 295 (471)
T ss_pred CCCceEEEEC
Confidence 8777888876
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=97.91 E-value=5.9e-05 Score=77.89 Aligned_cols=87 Identities=22% Similarity=0.167 Sum_probs=68.1
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.++++.|+.+++.+.|.- ..++-+|+||... -..-+|. +..-.-.|+||+....+|.
T Consensus 76 P~ir~~~Gd~v~v~v~N~l------~~~tsiHwHGl~~--~~~~DGv--------------P~vt~~~I~PG~s~~Y~f~ 133 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTL------PEDTSIHWHGILL--PFQMDGV--------------PGVSFAGIAPGETFTYRFP 133 (587)
T ss_pred ceEEEECCCEEEEEEEcCC------CCCceEEcCCCcC--CccccCC--------------CcccccccCCCCeEEEEEE
Confidence 4689999999999999974 5689999999852 1111111 0111124899999999999
Q ss_pred cCCceeeEeeeccchhhhcCceEEEeecc
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
+..+|.|.||||...++..||...+++.+
T Consensus 134 ~~~~GTyWYHsH~~~q~~~GL~G~lIV~~ 162 (587)
T TIGR01480 134 VRQSGTYWYHSHSGFQEQAGLYGPLIIDP 162 (587)
T ss_pred CCCCeeEEEecCchhHhhccceEEEEECC
Confidence 99999999999999999999998888765
No 35
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.76 E-value=0.00015 Score=57.25 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=56.2
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++|+|+ |.+ ...|-+.++.-.+.. +.. ........+++.+.||....+.|.+
T Consensus 18 ~i~v~~G~~V~~~--N~~------~~~H~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK------GGPHNVVFDEDAVPA-----GVK--------ELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEECCCCEEEEE--ECC------CCCceEEECCCCCcc-----chh--------hhcccccccccccCCCCEEEEEeCC
Confidence 4789999999887 544 246776665432211 100 0001123467788999999998876
Q ss_pred CCceeeEeeeccchhhhcCceEEEee
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
+|.|.|||- .|..+||...+.|
T Consensus 77 --~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 --PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred --CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999988865
No 36
>PLN02168 copper ion binding / pectinesterase
Probab=97.75 E-value=0.00014 Score=74.59 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=67.6
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.++++.|+++++.+.|.- +...-+|.||.+..--...+|. .- -.-.|+||++...+|+
T Consensus 57 P~I~~~~GD~v~V~v~N~L------~~~ttiHWHGl~~~~~~~~DGv--------------~g-tQcpI~PG~sftY~F~ 115 (545)
T PLN02168 57 PLLNATANDVINVNIFNNL------TEPFLMTWNGLQLRKNSWQDGV--------------RG-TNCPILPGTNWTYRFQ 115 (545)
T ss_pred CcEEEECCCEEEEEEEeCC------CCCccEeeCCccCCCCCCcCCC--------------CC-CcCCCCCCCcEEEEEE
Confidence 4589999999999999974 4678999999753111001111 11 2245999999999999
Q ss_pred c-CCceeeEeeeccchhhhcCceEEEeecc
Q 016150 340 A-DNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 340 a-dnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
+ +.+|.+.||+|...+...||...+++.+
T Consensus 116 ~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~ 145 (545)
T PLN02168 116 VKDQIGSYFYFPSLLLQKAAGGYGAIRIYN 145 (545)
T ss_pred eCCCCceEEEecChhhhhhCcceeEEEEcC
Confidence 8 5899999999999999999998888764
No 37
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.69 E-value=0.0002 Score=58.97 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=49.2
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.++++.|+.|+|++.|.+ +.+|.+-++++.+ ...|+|++...++|.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d------~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~a 108 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS------PISEGFSIDAYGI---------------------------SEVIKAGETKTISFKA 108 (135)
T ss_pred EEEECCCCEEEEEEEeCC------CCccceEECCCCc---------------------------ceEECCCCeEEEEEEC
Confidence 378999999999999987 3477777766532 2358899999999999
Q ss_pred CCceeeEeeeccc
Q 016150 341 DNPGAWAFHCHIE 353 (394)
Q Consensus 341 dnpG~w~~HCHil 353 (394)
+-||.|.|||-+-
T Consensus 109 dKpG~Y~y~C~~H 121 (135)
T TIGR03096 109 DKAGAFTIWCQLH 121 (135)
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999753
No 38
>PRK10965 multicopper oxidase; Provisional
Probab=97.56 E-value=0.00027 Score=72.32 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=57.5
Q ss_pred eEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccce---eEeceEEecCCceEEEEEecCCC
Q 016150 47 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQP---FEVDDMDIYSGESYSVLLTTNQD 114 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P---~~~d~l~l~~GqR~DVlv~~~~~ 114 (394)
+.+.++.|.+.+|+|+|.+.....-|+|.++.|+|++.||.+..+ -.-|++.+.+ ++..++++++..
T Consensus 426 ~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~ 495 (523)
T PRK10965 426 PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHD 495 (523)
T ss_pred cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCC
Confidence 457899999999999999976567899999999999999998753 3469999976 889999999753
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.56 E-value=0.0003 Score=72.68 Aligned_cols=88 Identities=16% Similarity=0.033 Sum_probs=68.7
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+++..|+++++.+.|.- +...-+|.||.+..--...+|. .. ..-.|+||+....+|+
T Consensus 60 PtI~~~~GD~v~V~V~N~L------~~~ttIHWHGl~q~~t~w~DGv--------------~~-TQcPI~PG~sftY~F~ 118 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNAL------DEPLLLTWHGVQQRKSAWQDGV--------------GG-TNCAIPAGWNWTYQFQ 118 (596)
T ss_pred CcEEEECCCEEEEEEEeCC------CCCccEEECCccCCCCccccCC--------------CC-CcCCcCCCCcEEEEEE
Confidence 4589999999999999974 4688999999754321111111 11 2346999999999999
Q ss_pred c-CCceeeEeeeccchhhhcCceEEEeecc
Q 016150 340 A-DNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 340 a-dnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
+ +.+|.+-||+|..++...||...|++.+
T Consensus 119 ~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~ 148 (596)
T PLN00044 119 VKDQVGSFFYAPSTALHRAAGGYGAITINN 148 (596)
T ss_pred eCCCCceeEeeccchhhhhCcCeeEEEEcC
Confidence 8 6899999999999999999988887764
No 40
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.51 E-value=0.0008 Score=56.23 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=63.6
Q ss_pred ceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc-----------ceeEeceEEecCCceEEEEEecCCC
Q 016150 46 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-----------QPFEVDDMDIYSGESYSVLLTTNQD 114 (394)
Q Consensus 46 ~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-----------~P~~~d~l~l~~GqR~DVlv~~~~~ 114 (394)
...+.++.|+.++|+|+|.+.. .-.|++-||+|.|++.++... .|...|++.|.+|++..+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 3589999999999999997776 679999999999999999984 58889999999999999999997 4
Q ss_pred CCcceEE
Q 016150 115 PSYNYWI 121 (394)
Q Consensus 115 ~~~~y~i 121 (394)
+| .|-+
T Consensus 111 ~G-~w~~ 116 (138)
T PF07731_consen 111 PG-PWLF 116 (138)
T ss_dssp TE-EEEE
T ss_pred ce-EEEE
Confidence 44 4433
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.20 E-value=0.0014 Score=52.05 Aligned_cols=68 Identities=18% Similarity=0.350 Sum_probs=42.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.+.+++.|.+. ..|-+.+.+.. -...|++|+...+.|.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~------~~h~~~i~~~~---------------------------~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDS------RPHEFVIPDLG---------------------------ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE-SS------S-EEEEEGGGT---------------------------EEEEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEECCC------CcEEEEECCCc---------------------------eEEEECCCCEEEEEEcC
Confidence 5889999999999999872 33444443311 12568899999999999
Q ss_pred CCceeeEeeeccchhhhcCceE
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGV 362 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~ 362 (394)
+.||.|-|||-+-.+ +.|...
T Consensus 83 ~~~G~y~~~C~~~~~-m~G~li 103 (104)
T PF13473_consen 83 LKPGEYEFYCTMHPN-MKGTLI 103 (104)
T ss_dssp -S-EEEEEB-SSS-T-TB----
T ss_pred CCCEEEEEEcCCCCc-ceeccc
Confidence 999999999996665 566543
No 42
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.88 E-value=0.0046 Score=63.44 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=58.6
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|.+.++|.+.. .+..|-|.+-++... +.+.||....+.|++
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~---~DViHGF~Ip~~nI~---------------------------~dv~PG~t~svtF~a 605 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKV---EDLTHGFAIPNYGVN---------------------------MEVAPQATASVTFTA 605 (635)
T ss_pred eEEecCCCEEEEEEEeCCcc---cccccceeecccCcc---------------------------EEEcCCceEEEEEEc
Confidence 56789999999999997532 256788888655432 246789999999999
Q ss_pred CCceeeEeeeccchhh-hcCceEEEeecc
Q 016150 341 DNPGAWAFHCHIEPHF-HIGMGVVLALGV 368 (394)
Q Consensus 341 dnpG~w~~HCHil~H~-~~GM~~~~~~~~ 368 (394)
+.||.|.+||...-|. ..+|...++|.+
T Consensus 606 dkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 606 DKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCCEEEEEECCcccccCcccceEEEEEEe
Confidence 9999999999985442 247777776643
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.79 E-value=0.012 Score=46.22 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=53.1
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++|.|+..+. ..|.+++ ...+ .+... +..... ..-.+..+.+|....+.|.
T Consensus 18 ~i~V~~G~tV~~~n~~~--------~~Hnv~~-------~~~~-~~~~~-~~~~~~----~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDS--------MPHNVVF-------VADG-MPAGA-DSDYVP----PGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp EEEEETTEEEEEEEESS--------SSBEEEE-------ETTS-SHTTG-GHCHHS----TTCEEEEBSTTEEEEEEEE-
T ss_pred EEEECCCCEEEEEECCC--------CCceEEE-------eccc-ccccc-cccccC----ccccceecCCCCEEEEEeC-
Confidence 58899999999876632 2444433 3311 00000 111111 1116677888998888887
Q ss_pred CCceeeEeeeccchhhhcCceEEEee
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
.+|.|.|+|- - |..+||-..+.|
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 9999999999 4 999999988876
No 44
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.67 E-value=0.007 Score=62.15 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=68.5
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.+..|+++.+.+.|.- +.+=-+|.||....=-...+|.+ --.=.|+||...+-+|+
T Consensus 59 P~I~~~~gD~ivV~v~N~~------~~~~sihWhGv~q~kn~w~DG~~---------------~TqCPI~Pg~~~tY~F~ 117 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL------DEPFSIHWHGVRQRKNPWQDGVY---------------ITQCPIQPGENFTYRFT 117 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC------CCceEEEeccccccCCccccCCc---------------cccCCcCCCCeEEEEEE
Confidence 4588999999999999974 45678899998654222222311 11124889999999999
Q ss_pred cC-CceeeEeeeccchhhhcCceEEEeeccc
Q 016150 340 AD-NPGAWAFHCHIEPHFHIGMGVVLALGVE 369 (394)
Q Consensus 340 ad-npG~w~~HCHil~H~~~GM~~~~~~~~~ 369 (394)
.+ ..|.+.||-|..+|.+.||...|.+-+.
T Consensus 118 v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~ 148 (563)
T KOG1263|consen 118 VKDQIGTLWYHSHVSWQRATGVFGALIINPR 148 (563)
T ss_pred eCCcceeEEEeeccccccccCceeEEEEcCC
Confidence 76 9999999999999999999888887653
No 45
>PRK02710 plastocyanin; Provisional
Probab=96.53 E-value=0.015 Score=47.47 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=50.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++|+|+ |.+ ..+|-+.+.+... . ..+ ...+.+|....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~------~~~H~v~~~~~~~---------~-------------~~~-~~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK------LAPHNAVFDGAKE---------L-------------SHK-DLAFAPGESWEETFSE 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC------CCCceEEecCCcc---------c-------------ccc-ccccCCCCEEEEEecC
Confidence 4788999999886 543 3467765542210 0 011 1347788888888876
Q ss_pred CCceeeEeeeccchhhhcCceEEEee
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
||.+.|+|= .|...||-..+.|
T Consensus 97 --~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 --AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred --CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999988876
No 46
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.11 E-value=0.39 Score=48.55 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=56.6
Q ss_pred EccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcCC
Q 016150 263 MLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN 342 (394)
Q Consensus 263 ~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adn 342 (394)
....+.++++++.|.+. ....=+++.|++++|+....+.. .+.-.|.+.+.|++...|..++.+
T Consensus 202 ~~~~~g~~rlRl~n~~~-----~~~~~~~~~~~~~~Vi~~DG~~v-----------~~~~~d~~~l~p~er~~v~v~~~~ 265 (451)
T COG2132 202 KAVPGGVVRLRLLNAGN-----ARTYHLALGGGPLTVIAVDGGPL-----------PPVSVDELYLAPGERYEVLVDMND 265 (451)
T ss_pred eecCCCeEEEEEEecCC-----ceEEEEEecCceEEEEEeCCcCc-----------CceeeeeEEecCcceEEEEEEcCC
Confidence 33455669999999862 22344555699999999865543 125678999999999999999888
Q ss_pred ceeeEeeecc
Q 016150 343 PGAWAFHCHI 352 (394)
Q Consensus 343 pG~w~~HCHi 352 (394)
.|.+.+.|.-
T Consensus 266 ~~~~~l~~~~ 275 (451)
T COG2132 266 GGAVTLTALG 275 (451)
T ss_pred CCeEEEEecc
Confidence 9999999987
No 47
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.04 Score=46.23 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=64.6
Q ss_pred EEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcC
Q 016150 262 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 341 (394)
Q Consensus 262 ~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ad 341 (394)
+.++.|++++.++.|... .-|=|=+- ++.... +.+... ....-..-.-..++.+.||....+-++..
T Consensus 65 ~~v~aG~tv~~v~~n~~e------l~hef~~~---~~~~~~--~~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE------LKHEFTMD---APDKNL--EHVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred ccccCCcEEeeeecCccc------ceEEEecc---Cccccc--hhHHHh--hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 577899999999999763 23433332 111111 111100 00011122456789999999999999999
Q ss_pred CceeeEeeeccchhhhcCceEEEeecc
Q 016150 342 NPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 342 npG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
++|.+-|-|-|-+|-+.||-..+.+.+
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999999887753
No 48
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.24 E-value=0.18 Score=40.80 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=29.8
Q ss_pred CCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeecc
Q 016150 330 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 330 ~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
++....+.| +.+|.+.|+|- .|..+||...+.|+.
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 466666666 57999999998 999999999999874
No 49
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.52 E-value=0.83 Score=40.18 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=60.2
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCch----hhcccC--CCCCCCcceeEecCCcE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE----DEKKFN--LKNPPLKNTAVIFPYGW 333 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~----~~~~~~--~~~p~~rDTv~v~~~g~ 333 (394)
..+-++.|-.|++++.|.+.+ + |.|-|+..+....... |...+. ...+.--..--|.+|..
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l------~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESL------P-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCC------C-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 357789999999999998633 3 5677775432211100 111010 00010001112345666
Q ss_pred EEEEEEcCCceeeEeeeccchhhhcCceEEEeecc
Q 016150 334 TALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 334 v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
...-|.+-.+|.+.|=|-+.-|.+.||-..|.+..
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 66667677799999999999999999999998865
No 50
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.33 E-value=0.8 Score=36.97 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=48.4
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|++|.|+-++.. ..|- |.+.+.+.|+. ......+++...+.|
T Consensus 43 ~ltV~~GdTVtw~~~~d~-------~~Hn---------V~s~~~~~f~s--------------~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGEG-------GGHN---------VVSDGDGDLDE--------------SERVSEEGTTYEHTF-- 90 (115)
T ss_pred EEEECCCCEEEEEECCCC-------CCEE---------EEECCCCCccc--------------cccccCCCCEEEEEe--
Confidence 478999999999754421 1333 22332233320 112345677777777
Q ss_pred CCceeeEeeeccchhhhcCceEEEeec
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLALG 367 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~~ 367 (394)
+.||.+.|+|= .|..+||-..+.|+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 68999999998 89999999888763
No 51
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=93.06 E-value=0.092 Score=42.62 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=52.2
Q ss_pred ceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEE-EEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEe
Q 016150 46 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 124 (394)
Q Consensus 46 ~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~V-Ia~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~ 124 (394)
-|+|.++.|++.+++|.|.... ...+++-|-.+.- -..||..-.+ .-.|.||+++..-+++++.+| .||-..-
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~~~~~G-t~wYH~H 98 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFTYEFTANQQAG-TYWYHSH 98 (117)
T ss_dssp EEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEEEEEEESSCSE-EEEEEEC
T ss_pred CCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEeecceeeeEeeecccc-ceeEeeC
Confidence 4799999999999999999854 3455555432110 0267765322 235899999999999988555 9998764
Q ss_pred ec
Q 016150 125 VR 126 (394)
Q Consensus 125 ~~ 126 (394)
..
T Consensus 99 ~~ 100 (117)
T PF07732_consen 99 VH 100 (117)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 52
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=92.99 E-value=0.37 Score=38.03 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEE
Q 016150 42 EQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWI 121 (394)
Q Consensus 42 ~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i 121 (394)
..+.|..+++++|+.++|.+.|.+... ..|.+++ .-....|.+|+...+.+...+. | +|.+
T Consensus 30 ~~f~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~----------------~~~~~~l~~g~~~~~~f~~~~~-G-~y~~ 90 (104)
T PF13473_consen 30 FGFSPSTITVKAGQPVTLTFTNNDSRP-HEFVIPD----------------LGISKVLPPGETATVTFTPLKP-G-EYEF 90 (104)
T ss_dssp EEEES-EEEEETTCEEEEEEEE-SSS--EEEEEGG----------------GTEEEEE-TT-EEEEEEEE-S--E-EEEE
T ss_pred CeEecCEEEEcCCCeEEEEEEECCCCc-EEEEECC----------------CceEEEECCCCEEEEEEcCCCC-E-EEEE
Confidence 455688999999999999999998775 5666665 1112678899999888876553 3 6766
Q ss_pred E
Q 016150 122 S 122 (394)
Q Consensus 122 ~ 122 (394)
.
T Consensus 91 ~ 91 (104)
T PF13473_consen 91 Y 91 (104)
T ss_dssp B
T ss_pred E
Confidence 5
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=92.92 E-value=0.51 Score=39.07 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCcCceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceE
Q 016150 41 NEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYW 120 (394)
Q Consensus 41 ~~~~~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~ 120 (394)
+....|..|.|++|.+++|++.|.+.. .-.+.++++. -...|.+||+..+-+.+++. | .|+
T Consensus 55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adKp-G-~Y~ 115 (135)
T TIGR03096 55 NVLNEPEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADKA-G-AFT 115 (135)
T ss_pred eeEEcCCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCCC-E-EEE
Confidence 344567899999999999999998874 3455555541 15678999999999999874 3 787
Q ss_pred EE
Q 016150 121 IS 122 (394)
Q Consensus 121 i~ 122 (394)
..
T Consensus 116 y~ 117 (135)
T TIGR03096 116 IW 117 (135)
T ss_pred Ee
Confidence 65
No 54
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.54 E-value=1.1 Score=40.04 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=50.2
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|++.+++.|. .|.|.+-+... -..+-||....+.|++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV-------~Hsf~ip~~~~---------------------------k~da~PG~~~~~~~~~ 163 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDV-------IHSFWVPELGG---------------------------KIDAIPGQYNALWFNA 163 (201)
T ss_pred EEEEEcCCEEEEEEEeCch-------hhcccccccCc---------------------------eEEecCCcEEEEEEEe
Confidence 4789999999999999763 45544433221 1235578888999999
Q ss_pred CCceeeEeeecc---chhhhcCceEEEee
Q 016150 341 DNPGAWAFHCHI---EPHFHIGMGVVLAL 366 (394)
Q Consensus 341 dnpG~w~~HCHi---l~H~~~GM~~~~~~ 366 (394)
+.||.+...|.- ..| ..|...+.+
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 999999999997 445 455555543
No 55
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.06 E-value=2.5 Score=34.40 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=48.7
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
..+.++.|+.+.+.+++.+ ..|.|.+-+...++ .+.||....+.|+
T Consensus 46 ~~l~lp~g~~v~~~ltS~D-------ViHsf~ip~~~~k~---------------------------d~~PG~~~~~~~~ 91 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED-------VIHSFWIPELGIKM---------------------------DAIPGRTNSVTFT 91 (120)
T ss_dssp SEEEEETTSEEEEEEEESS-------S-EEEEETTCTEEE---------------------------EEBTTCEEEEEEE
T ss_pred ceecccccceEeEEEEcCC-------ccccccccccCccc---------------------------ccccccceeeeee
Confidence 4588999999999999986 46888876665432 3667888999999
Q ss_pred cCCceeeEeeeccchh
Q 016150 340 ADNPGAWAFHCHIEPH 355 (394)
Q Consensus 340 adnpG~w~~HCHil~H 355 (394)
++.||.+-+.|...=.
T Consensus 92 ~~~~G~y~~~C~e~CG 107 (120)
T PF00116_consen 92 PDKPGTYYGQCAEYCG 107 (120)
T ss_dssp ESSSEEEEEEE-SSSS
T ss_pred eccCCcEEEcCccccC
Confidence 9999999999986543
No 56
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.88 E-value=3.6 Score=35.67 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=60.4
Q ss_pred cceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCC-CCCch---hhcccCC--CCCCCcceeEecCCc
Q 016150 259 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG-KFTKE---DEKKFNL--KNPPLKNTAVIFPYG 332 (394)
Q Consensus 259 ~~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~---~~~~~~~--~~p~~rDTv~v~~~g 332 (394)
...+-++.|-.|.++|.|.+. .+ |..-|+..+.- +..+. |...++. ..+..-..=-+..|.
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e~------~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYES------LP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCCC------CC-------ccEEEecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 345788999999999999863 24 45555544321 11100 1111110 111111111133455
Q ss_pred EEEEEEEcCCceeeEeeeccchhhhcCceEEEeecc
Q 016150 333 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 368 (394)
Q Consensus 333 ~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~~ 368 (394)
...+-|.+--||.+-+=|=+.-|+++||-..+++..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 666777778999999999999999999999998865
No 57
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=89.93 E-value=2.2 Score=32.04 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=42.9
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.+..|++|.| .|.+ ...|-.+.+.-.+ +.. .+.. ..+.++....+. .
T Consensus 12 ~i~v~~GdtVt~--~N~d------~~~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~~~~t--f 60 (83)
T TIGR02657 12 ELHVKVGDTVTW--INRE------AMPHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQAYSLT--F 60 (83)
T ss_pred EEEECCCCEEEE--EECC------CCCccEEecCCCC-------ccc-------------cccc-cccCCCCEEEEE--C
Confidence 478999999988 4654 3467777643211 000 1111 123556655554 4
Q ss_pred CCceeeEeeeccchhhhcCceEEEee
Q 016150 341 DNPGAWAFHCHIEPHFHIGMGVVLAL 366 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~GM~~~~~~ 366 (394)
+.||.|.|||=+ |- +|-..+.|
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEEE
Confidence 689999999986 55 47666654
No 58
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=89.86 E-value=2.4 Score=35.90 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=41.7
Q ss_pred eEEEecCCCeEEEEEeecCCcceEEEEEeCce--EEE-EEeCCCccceeEeceEEec---CCce--EEEEEecCCCCCcc
Q 016150 47 QILHVQPNKTYRLRIASTTALASLNLAVKNHK--MVV-VEADGNYVQPFEVDDMDIY---SGES--YSVLLTTNQDPSYN 118 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~--m~V-Ia~DG~~v~P~~~d~l~l~---~GqR--~DVlv~~~~~~~~~ 118 (394)
|.|.+++|+++++++.|....-.-.|.|..+. +.. -+.||....+ +.-.+. +|+. .++..++++ +| .
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~---~~~i~p~~~~g~~~~~~~tf~f~~-aG-t 126 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVA---GTGFLPPPKSGKFGYTDFTYHFST-AG-T 126 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccc---cCcccCCCCCCccceeEEEEECCC-Ce-E
Confidence 57778999999999999975222233343322 110 1356643221 122222 3544 478888874 44 9
Q ss_pred eEEEEe
Q 016150 119 YWISAG 124 (394)
Q Consensus 119 y~i~~~ 124 (394)
||..-.
T Consensus 127 ywyhC~ 132 (148)
T TIGR03095 127 YWYLCT 132 (148)
T ss_pred EEEEcC
Confidence 999743
No 59
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=84.42 E-value=3.7 Score=31.99 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=37.7
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccce-eEeceEEecCCceEEEEEecCCCCCcceEEE
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQP-FEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 122 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P-~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~ 122 (394)
.|..+.|++|++++|. |.+.. ...+.++....- .+.....+ ...+.+.+.||+++++-++. +| .|...
T Consensus 15 ~P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G-~y~y~ 83 (99)
T TIGR02656 15 EPAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVP---AGVKELAKSLSHKDLLNSPGESYEVTFST---PG-TYTFY 83 (99)
T ss_pred eCCEEEECCCCEEEEE--ECCCC-CceEEECCCCCc---cchhhhcccccccccccCCCCEEEEEeCC---CE-EEEEE
Confidence 4568999999997665 76533 223333221100 00001111 12256788999999996664 44 77665
No 60
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=82.84 E-value=6.5 Score=36.28 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=49.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|++.++-.|. .|.|.+-+..++ +.+-||-...+.+.+
T Consensus 138 ~l~lPv~~~V~f~ltS~DV-------iHsF~IP~l~~k---------------------------~d~iPG~~~~~~~~~ 183 (247)
T COG1622 138 ELVLPVGRPVRFKLTSADV-------IHSFWIPQLGGK---------------------------IDAIPGMTTELWLTA 183 (247)
T ss_pred eEEEeCCCeEEEEEEechh-------ceeEEecCCCce---------------------------eeecCCceEEEEEec
Confidence 4789999999999998764 354444333322 235567888899999
Q ss_pred CCceeeEeeeccchhhhcC-ceEEEe
Q 016150 341 DNPGAWAFHCHIEPHFHIG-MGVVLA 365 (394)
Q Consensus 341 dnpG~w~~HCHil~H~~~G-M~~~~~ 365 (394)
+.+|.+..+|+..-=.... |-..+.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~ 209 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVI 209 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEE
Confidence 9999999999976543333 433333
No 61
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=80.79 E-value=27 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=14.7
Q ss_pred EEEEeecCCc-ceEEEEEeCce
Q 016150 58 RLRIASTTAL-ASLNLAVKNHK 78 (394)
Q Consensus 58 RlRlINa~~~-~~~~l~id~h~ 78 (394)
++|+||++.. ..+++.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788888874 66777776543
No 62
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=80.42 E-value=12 Score=30.86 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=29.8
Q ss_pred eeEecCCcEEEEEEEcCCceeeEeeeccchhhhcCceEEEeec
Q 016150 325 TAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 367 (394)
Q Consensus 325 Tv~v~~~g~v~irf~adnpG~w~~HCHil~H~~~GM~~~~~~~ 367 (394)
++...++.....-|.. ||.+.|.|- .|..+||-..+.|+
T Consensus 89 ~~~~~~~~s~~~Tfe~--~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 89 TLKAGINESFTHTFET--PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred ccccCCCcceEEEecc--cceEEEEec--cCCCCCcEEEEEeC
Confidence 3344445777777765 999999995 69999999888775
No 63
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=80.40 E-value=18 Score=27.14 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=35.7
Q ss_pred EEEEEeecCCcceEEEEEe-Cc--eEEEEEeCCCccc--------eeEeceEEecCCceEEEEEecCCCC--CcceEEEE
Q 016150 57 YRLRIASTTALASLNLAVK-NH--KMVVVEADGNYVQ--------PFEVDDMDIYSGESYSVLLTTNQDP--SYNYWISA 123 (394)
Q Consensus 57 yRlRlINa~~~~~~~l~id-~h--~m~VIa~DG~~v~--------P~~~d~l~l~~GqR~DVlv~~~~~~--~~~y~i~~ 123 (394)
..|++.|.+.. .+.|.+. |+ ++.|...+|..|- .+......|.|||...+-.+.+... .++|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 46777777754 3566665 43 4555555777662 2334678899999988888877643 45888754
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=79.29 E-value=8.6 Score=32.55 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=53.7
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEe------CceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcc
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVK------NHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYN 118 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id------~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~ 118 (394)
.+..+.++.|+++|+-+-|.+-.-. .|-++ +|.-..+.+| ..+=-..+.+.|.||+...+++.+.+.. .
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~g--~ 135 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGAG--K 135 (158)
T ss_pred CCCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCCc--c
Confidence 4567999999999999999997643 33333 2322333334 3333455789999999999999998753 7
Q ss_pred eEEEEeecC
Q 016150 119 YWISAGVRG 127 (394)
Q Consensus 119 y~i~~~~~~ 127 (394)
|.++-...+
T Consensus 136 ye~~C~iPG 144 (158)
T COG4454 136 YEFACNIPG 144 (158)
T ss_pred EEEEecCCC
Confidence 877754433
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=74.46 E-value=17 Score=29.61 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=48.3
Q ss_pred eEEEecCC-CeEEEEEeecCCcc----eEEEEEe-CceEEEE-------EeCCCcccee----EeceEEecCCceEEEEE
Q 016150 47 QILHVQPN-KTYRLRIASTTALA----SLNLAVK-NHKMVVV-------EADGNYVQPF----EVDDMDIYSGESYSVLL 109 (394)
Q Consensus 47 ~~~~v~~g-~~yRlRlINa~~~~----~~~l~id-~h~m~VI-------a~DG~~v~P~----~~d~l~l~~GqR~DVlv 109 (394)
..|.|+++ +.+.+.|-|.+..- .-++-|- .-++.-| +.|-+||.+- ...+=.|++||..+|-+
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 47999985 88999999997642 1122221 1122222 3466677542 23555799999999999
Q ss_pred ecCC-CCCcceEEE
Q 016150 110 TTNQ-DPSYNYWIS 122 (394)
Q Consensus 110 ~~~~-~~~~~y~i~ 122 (394)
+++. .+|++|...
T Consensus 96 ~~~~l~~g~~Y~f~ 109 (125)
T TIGR02695 96 DVSKLSAGEDYTFF 109 (125)
T ss_pred ECCCCCCCCcceEE
Confidence 9864 455467655
No 66
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=73.05 E-value=26 Score=30.93 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=48.6
Q ss_pred eEEEecCCCeEEEEEeecCCcce-EEEEEeCc---eEEEEEeCCCccc-----eeEeceEEecCCceEEEEEecCCCCCc
Q 016150 47 QILHVQPNKTYRLRIASTTALAS-LNLAVKNH---KMVVVEADGNYVQ-----PFEVDDMDIYSGESYSVLLTTNQDPSY 117 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~~~~~-~~l~id~h---~m~VIa~DG~~v~-----P~~~d~l~l~~GqR~DVlv~~~~~~~~ 117 (394)
.+|.|..|-++.++++|.+.+.+ +.+-..+- ..-.|+.||.-+. |-....--|.+||++..+..... +|
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~-aG- 163 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLP-AG- 163 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCC-Cc-
Confidence 58999999999999999988644 22222121 2457778876551 21112234679999987764322 44
Q ss_pred ceEEEEe
Q 016150 118 NYWISAG 124 (394)
Q Consensus 118 ~y~i~~~ 124 (394)
.||+.=.
T Consensus 164 ~YwlvC~ 170 (196)
T PF06525_consen 164 YYWLVCG 170 (196)
T ss_pred eEEEEcc
Confidence 9999743
No 67
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=71.93 E-value=11 Score=34.02 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=43.6
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|++.++..|.+ |.|+|=+.+ ..+|. -||....+.|++
T Consensus 131 ~l~iP~g~~v~~~ltS~DVi--------------Hsf~vP~l~-----------------~k~da---iPG~~~~~~~~~ 176 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADTM--------------TSFWIPQLG-----------------GQKYA---MTGMTMNWYLQA 176 (217)
T ss_pred cEEEECCCEEEEEEECCchh--------------hhhhchhhC-----------------ceeec---CCCceEEEEEEe
Confidence 37889999999999988743 455653322 23333 368888999999
Q ss_pred CCceeeEeeecc
Q 016150 341 DNPGAWAFHCHI 352 (394)
Q Consensus 341 dnpG~w~~HCHi 352 (394)
+.||.+--.|--
T Consensus 177 ~~~G~y~g~Cae 188 (217)
T TIGR01432 177 DQVGTYRGRNAN 188 (217)
T ss_pred CCCEEEEEEehh
Confidence 999999999974
No 68
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=71.56 E-value=12 Score=34.13 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|++.++..|.+ |.|+|=+.+ ..+|.+ ||-...+.|++
T Consensus 140 el~lP~g~pV~~~ltS~DVi--------------HSF~VP~l~-----------------~K~Dai---PG~~n~~~~~~ 185 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM--------------NSFFIPQLG-----------------SQIYAM---AGMQTKLHLIA 185 (226)
T ss_pred eEEEECCCEEEEEEEECchh--------------hhhhhhhcC-----------------CeeecC---CCceEEEEEEe
Confidence 47889999999999988743 445553332 223333 57888899999
Q ss_pred CCceeeEeeeccc
Q 016150 341 DNPGAWAFHCHIE 353 (394)
Q Consensus 341 dnpG~w~~HCHil 353 (394)
+.||.+...|--.
T Consensus 186 ~~~G~y~g~CaE~ 198 (226)
T TIGR01433 186 NEPGVYDGISANY 198 (226)
T ss_pred CCCEEEEEEchhh
Confidence 9999999999743
No 69
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=71.32 E-value=13 Score=26.37 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=30.3
Q ss_pred EEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEE
Q 016150 49 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 107 (394)
Q Consensus 49 ~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DV 107 (394)
|.+.+|+..+||.-.+. .|.+.+-.++|.. || ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 66788888888854433 3666666777654 55 345566777776654
No 70
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=68.13 E-value=55 Score=26.74 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=61.2
Q ss_pred cceEEccC-CCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCch--h------hcccCC--CCCCCcceeE
Q 016150 259 SGVYMLGL-NTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE--D------EKKFNL--KNPPLKNTAV 327 (394)
Q Consensus 259 ~~~~~~~~-g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~--~------~~~~~~--~~p~~rDTv~ 327 (394)
...+.++. ++.+.++|.|.+.+ |--.=||++-|...+ ..+.. + ...|-. +.-++-.|=.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~l--------pk~~MgHN~Vl~k~~--d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl 84 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKL--------PKAVMGHNWVLAKSA--DMQAVATDGMSAGADNNYVKPGDARVIAHTKV 84 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcC--------chhccCccEEEeccc--cHHHHHHHHHhcccccCccCCCCcceEEEccc
Confidence 34577876 58999999998632 333346676544332 21110 0 111211 1234667888
Q ss_pred ecCCcEEEEEEEcC--Ccee-eEeeeccchhhhcCceEEE
Q 016150 328 IFPYGWTALRFVAD--NPGA-WAFHCHIEPHFHIGMGVVL 364 (394)
Q Consensus 328 v~~~g~v~irf~ad--npG~-w~~HCHil~H~~~GM~~~~ 364 (394)
|.+|+...|.|.+. .+|. |.|=|-.--|+. .|-..|
T Consensus 85 iggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l 123 (125)
T TIGR02695 85 IGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTV 123 (125)
T ss_pred cCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEE
Confidence 89999999999975 4775 999999999997 476655
No 71
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=66.90 E-value=39 Score=28.98 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=43.4
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.+++.++-.+. .|.|.+-..... .| +-||....+.|.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV-------IHSF~VP~lgvK------------------------~D---avPGr~n~l~~~~ 119 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV-------IHSWSVPSLGIK------------------------AD---AIPGRLHKINTFI 119 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc-------ceeeeccccCce------------------------ee---ccCCceEEEEEec
Confidence 4788999999999998763 465555433221 12 3357777788899
Q ss_pred CCceeeEeeeccch
Q 016150 341 DNPGAWAFHCHIEP 354 (394)
Q Consensus 341 dnpG~w~~HCHil~ 354 (394)
+.+|.+...|.-+=
T Consensus 120 ~~~G~y~gqCsElC 133 (162)
T PTZ00047 120 LREGVFYGQCSEMC 133 (162)
T ss_pred CCCeEEEEEcchhc
Confidence 99999999999554
No 72
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.86 E-value=33 Score=31.23 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=49.8
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.|++.+++.|. .|.|.+-....+ +.+-||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~ts~DV-------iHsf~ip~~~~k---------------------------~d~~Pg~~~~~~~~ 185 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV-------IHSWTVPSLGVK---------------------------VDAIPGRLNQLSFE 185 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc-------ccceeccccCce---------------------------eECCCCcceeEEEE
Confidence 45789999999999999864 455555333221 22446788889999
Q ss_pred cCCceeeEeeeccchhhhcC-ceEEE
Q 016150 340 ADNPGAWAFHCHIEPHFHIG-MGVVL 364 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~G-M~~~~ 364 (394)
++.||.+...|.-+=..... |-..+
T Consensus 186 ~~~~g~y~~~C~e~CG~~H~~M~~~v 211 (228)
T MTH00140 186 PKRPGVFYGQCSEICGANHSFMPIVV 211 (228)
T ss_pred eCCCEEEEEECccccCcCcCCCeEEE
Confidence 99999999999976654333 43333
No 73
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.25 E-value=36 Score=30.21 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=44.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.+++.++-.|. .|.|.+-....+ .| +-||....+.|.+
T Consensus 117 ~l~lp~g~~v~~~ltS~DV-------iHsf~vp~l~~k------------------------~d---~~PG~~~~~~~~~ 162 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV-------IHSFSVPDLNLK------------------------MD---AIPGRINHLFFCP 162 (194)
T ss_pred eEEEeCCCEEEeeeecCcc-------ccceeccccCce------------------------ee---cCCCceEEEEEEc
Confidence 4788999999999998763 565555443221 22 4468888899999
Q ss_pred CCceeeEeeeccch
Q 016150 341 DNPGAWAFHCHIEP 354 (394)
Q Consensus 341 dnpG~w~~HCHil~ 354 (394)
+.+|.+..-|.-.-
T Consensus 163 ~~~G~y~g~C~e~C 176 (194)
T MTH00047 163 DRHGVFVGYCSELC 176 (194)
T ss_pred CCCEEEEEEeehhh
Confidence 99999999998543
No 74
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=62.99 E-value=63 Score=26.35 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=43.2
Q ss_pred EEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc-------ceeEeceEEecCCceEEEEEecCCC
Q 016150 48 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-------QPFEVDDMDIYSGESYSVLLTTNQD 114 (394)
Q Consensus 48 ~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-------~P~~~d~l~l~~GqR~DVlv~~~~~ 114 (394)
.|.+...-.|+|++-..+ ..+|.|+|..+ |..++..- .+.....+.|..|++|+|-|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 456666667999988433 46778998764 66776543 4566678899999999999997653
No 75
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=59.02 E-value=78 Score=25.67 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=38.5
Q ss_pred EEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc-ceeEeceEEecCCceEEEEEecCCC
Q 016150 49 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQD 114 (394)
Q Consensus 49 ~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-~P~~~d~l~l~~GqR~DVlv~~~~~ 114 (394)
|.+...-.|+|.+...+ ..+|.|+|.. ||..++..- .+.....+.|..|++|.|-|...+.
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 45555557999884333 4577888863 455444322 2334456888899999988887554
No 76
>PRK02710 plastocyanin; Provisional
Probab=58.94 E-value=41 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=35.4
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEE
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 122 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~ 122 (394)
.|..+++++|++++| +|.+.. .-++.++ +. +......+.+.+|+.+++.++. +| .|...
T Consensus 45 ~P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~----------~~--~~~~~~~~~~~pg~t~~~tF~~---~G-~y~y~ 103 (119)
T PRK02710 45 EPSTLTIKAGDTVKW--VNNKLA-PHNAVFD----------GA--KELSHKDLAFAPGESWEETFSE---AG-TYTYY 103 (119)
T ss_pred eCCEEEEcCCCEEEE--EECCCC-CceEEec----------CC--ccccccccccCCCCEEEEEecC---CE-EEEEE
Confidence 467899999998766 565432 2233333 21 1112234678999999977775 33 66544
No 77
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=58.24 E-value=24 Score=33.84 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=43.5
Q ss_pred eEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEc
Q 016150 261 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 340 (394)
Q Consensus 261 ~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~a 340 (394)
.+.++.|+.|++.++..|.| |.|+|=+.+. .. ..-||-...+.|.+
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--------------HSF~IP~Lg~-----------------K~---damPG~~n~l~~~a 197 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--------------NSFFIPRLGS-----------------QI---YAMAGMQTRLHLIA 197 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--------------hhhhhhhhCC-----------------ee---ecCCCceeEEEEEc
Confidence 37889999999999988754 4555533321 12 23467888899999
Q ss_pred CCceeeEeeeccc
Q 016150 341 DNPGAWAFHCHIE 353 (394)
Q Consensus 341 dnpG~w~~HCHil 353 (394)
+.+|.+.-.|--.
T Consensus 198 ~~~G~Y~G~CaEy 210 (315)
T PRK10525 198 NEPGTYDGISASY 210 (315)
T ss_pred CCCEEEEEEChhh
Confidence 9999999999743
No 78
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=56.45 E-value=16 Score=28.27 Aligned_cols=63 Identities=25% Similarity=0.363 Sum_probs=39.0
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc--cee----EeceEEecCCceEEEEEecCCCCCcc
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--QPF----EVDDMDIYSGESYSVLLTTNQDPSYN 118 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v--~P~----~~d~l~l~~GqR~DVlv~~~~~~~~~ 118 (394)
.|..+.|++|++++ ++|.... +|++++++ |+... +.. .-....+.+|+.+.+-++ .+| .
T Consensus 15 ~P~~i~V~~G~tV~--~~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G-~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTVT--FVNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPG-T 79 (99)
T ss_dssp ESSEEEEETTEEEE--EEEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSE-E
T ss_pred eCCEEEECCCCEEE--EEECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC---CCe-E
Confidence 46789999998765 5665222 35555554 33211 111 115678999999999888 234 6
Q ss_pred eEEE
Q 016150 119 YWIS 122 (394)
Q Consensus 119 y~i~ 122 (394)
|...
T Consensus 80 y~y~ 83 (99)
T PF00127_consen 80 YEYY 83 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 79
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.01 E-value=39 Score=30.71 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=44.3
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .| .|+|=+.| ...|.+ ||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-------iH-------sf~vP~l~-----------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 140 NRLVLPYKSNIRALITAADV-------LH-------SWTVPSLG-----------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred ceEEEecCCEEEEEEecCcc-------cc-------ceeccccC-----------------ccccCC---CCcEEEEEEE
Confidence 45889999999999998764 34 44443332 233433 5777788999
Q ss_pred cCCceeeEeeeccch
Q 016150 340 ADNPGAWAFHCHIEP 354 (394)
Q Consensus 340 adnpG~w~~HCHil~ 354 (394)
++.||.+...|--+-
T Consensus 186 ~~~~G~y~g~CsE~C 200 (226)
T MTH00139 186 INRPGVFYGQCSEIC 200 (226)
T ss_pred cCCCEEEEEEChhhc
Confidence 999999999998544
No 80
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=52.04 E-value=74 Score=26.61 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=44.0
Q ss_pred CeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEe-------ceEEecCCceE-EEEEecCCCCCcceEEEEe
Q 016150 55 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV-------DDMDIYSGESY-SVLLTTNQDPSYNYWISAG 124 (394)
Q Consensus 55 ~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~-------d~l~l~~GqR~-DVlv~~~~~~~~~y~i~~~ 124 (394)
.+|-|-+=|.|.. .+.++...++|+ +||+++.|-.+ +.+.|.|||=- .+.|.-... | .-.|...
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~lS-G-yhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEALS-G-YHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCCC-c-ceEEEEE
Confidence 4677888888865 457788888887 89998866443 56789999976 565555443 2 4445443
No 81
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=51.46 E-value=47 Score=26.50 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=28.4
Q ss_pred eEEEEEeecCCc-ceEEEEEeCc-eEEEEEeCCCccceeEeceEEecCCceEEEEEec
Q 016150 56 TYRLRIASTTAL-ASLNLAVKNH-KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 111 (394)
Q Consensus 56 ~yRlRlINa~~~-~~~~l~id~h-~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~ 111 (394)
.|+|+|+|-+.. ..+.|+++|. .+++. . ..+.+.|.+|+..++-|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEE
Confidence 499999999985 6688888874 34441 1 3366788899887765554
No 82
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=50.02 E-value=93 Score=28.33 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=47.9
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.+++.|. .|.|.+-+...+ +.+-||....+.|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------iHsf~vP~~~~k---------------------------~daiPG~~~~~~~~ 185 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV-------IHSWTVPSLGVK---------------------------VDAVPGRLNQIGFT 185 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc-------cccccccccCcc---------------------------eecCCCceEEEEEE
Confidence 45788999999999999864 455554443222 12446778888899
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+..-|.-.=......|
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M 207 (228)
T MTH00008 186 ITRPGVFYGQCSEICGANHSFM 207 (228)
T ss_pred eCCCEEEEEEChhhcCcCccCc
Confidence 9999999999986654443333
No 83
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.96 E-value=58 Score=29.71 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=45.1
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. . |.|+|-+.| ...| +-||....+-|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------i-------Hsf~ip~~~-----------------~k~d---a~PG~~~~~~~~ 185 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV-------L-------HSWAVPALG-----------------VKMD---AVPGRLNQTAFI 185 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc-------c-------cceeccccC-----------------Cccc---cCCCceEEEEEE
Confidence 35788999999999998764 3 556664443 1222 346888888999
Q ss_pred cCCceeeEeeeccch
Q 016150 340 ADNPGAWAFHCHIEP 354 (394)
Q Consensus 340 adnpG~w~~HCHil~ 354 (394)
++.||.+...|.-+=
T Consensus 186 ~~~~G~~~g~C~e~C 200 (230)
T MTH00129 186 ASRPGVFYGQCSEIC 200 (230)
T ss_pred eCCceEEEEEChhhc
Confidence 999999999999644
No 84
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=49.38 E-value=1.1e+02 Score=22.91 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=40.7
Q ss_pred EecCCCeE--EEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceE-EecCCceEEEEEecCCCCCcceEEEEeec
Q 016150 50 HVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDPSYNYWISAGVR 126 (394)
Q Consensus 50 ~v~~g~~y--RlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l-~l~~GqR~DVlv~~~~~~~~~y~i~~~~~ 126 (394)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.......+.|.+++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 34567665 568899988654344333 33455555 33445 78999999888887653334888887654
No 85
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.72 E-value=98 Score=28.19 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=48.0
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .|.|.+-.... ..| +-||....+.|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------iHsf~iP~lg~------------------------k~d---aiPG~~~~~~~~ 185 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSADV-------LHSWAVPSLGV------------------------KMD---AVPGRLNQTTFF 185 (229)
T ss_pred ceEEEecCeEEEEEEEECCc-------cccccccccCc------------------------eee---cCCCceEEEEEE
Confidence 45789999999999998764 45554433321 222 335777888999
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+...|.-+--...+.|
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M 207 (229)
T MTH00038 186 ISRTGLFYGQCSEICGANHSFM 207 (229)
T ss_pred cCCCEEEEEEcccccCcCcCCC
Confidence 9999999999986655444444
No 86
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.57 E-value=1.1e+02 Score=27.98 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=46.7
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .| .|+|-+.| ... ..-||....+.|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------iH-------sf~iP~lg-----------------~k~---daiPG~~~~~~~~ 185 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV-------LH-------SWTVPALG-----------------VKM---DAVPGRLNQATFI 185 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc-------cc-------cccccccC-----------------cee---EecCCceEEEEEE
Confidence 45788999999999998764 34 44443322 112 2345777788899
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+..-|.-+=......|
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M 207 (230)
T MTH00185 186 ISRPGLYYGQCSEICGANHSFM 207 (230)
T ss_pred eCCcEEEEEEchhhcCcCcCCC
Confidence 9999999999997554443433
No 87
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=48.51 E-value=1e+02 Score=27.98 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=47.3
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. . |.|+|-+.| ...| +-||....+.|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------i-------Hsf~ip~lg-----------------~k~d---aiPG~~~~~~~~ 185 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV-------L-------HSWAVPSLG-----------------LKTD---AIPGRLNQTTLM 185 (227)
T ss_pred ceEEecCCCEEEEEEEECcc-------c-------ccccccccc-----------------ccee---cCCCceEEEEEe
Confidence 45789999999999998764 3 444443332 1122 346778888999
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+..-|.-.-......|
T Consensus 186 ~~~~G~~~g~Cse~CG~~H~~M 207 (227)
T MTH00098 186 STRPGLYYGQCSEICGSNHSFM 207 (227)
T ss_pred cCCcEEEEEECccccCcCcCCc
Confidence 9999999999997654443433
No 88
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=48.48 E-value=63 Score=24.66 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred ecCCCeEEEEEe--ecCCcceEEEEEeCc--eEEEEEeCCCccceeEeceEEecCCceEEEEEecCCC-CCcceEEEEee
Q 016150 51 VQPNKTYRLRIA--STTALASLNLAVKNH--KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQD-PSYNYWISAGV 125 (394)
Q Consensus 51 v~~g~~yRlRlI--Na~~~~~~~l~id~h--~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~-~~~~y~i~~~~ 125 (394)
.+||+++.+|.+ +... . .-...+. .++|..-+|..+.-... ........++.-+.++.. ..+.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 489999999999 6662 1 0111222 36677777776633222 245677888888888765 34599998876
Q ss_pred c
Q 016150 126 R 126 (394)
Q Consensus 126 ~ 126 (394)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 3
No 89
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.82 E-value=1.1e+02 Score=28.02 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=47.5
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .|.|.+-.... .+| +-||....+.|.
T Consensus 151 n~lvlP~~~~v~~~~tS~DV-------iHsf~iP~lgv------------------------K~D---aiPG~~n~~~~~ 196 (240)
T MTH00023 151 NRLVVPINTHVRILVTGADV-------LHSFAVPSLGL------------------------KID---AVPGRLNQTGFF 196 (240)
T ss_pred ceEEEecCCEEEEEEEcCCc-------ccceeecccCc------------------------eee---cCCCcceeEEEE
Confidence 45889999999999998764 45555543322 222 234677778899
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+.-.|.-.=-.....|
T Consensus 197 ~~~~G~y~g~C~e~CG~~Hs~M 218 (240)
T MTH00023 197 IKRPGVFYGQCSEICGANHSFM 218 (240)
T ss_pred cCCCEEEEEEchhhcCcCccCC
Confidence 9999999999986654444433
No 90
>PRK02888 nitrous-oxide reductase; Validated
Probab=46.90 E-value=76 Score=33.40 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=35.8
Q ss_pred cCceEEEecCCCeEEEEEeecCCc--ceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEE
Q 016150 44 CAPQILHVQPNKTYRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWI 121 (394)
Q Consensus 44 ~~~~~~~v~~g~~yRlRlINa~~~--~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i 121 (394)
..+..|.|+.|+.++|+|-|.... -.--|.|+++. + .+.+.||+...|-+++++. | .||+
T Consensus 552 f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------I-~~dv~PG~t~svtF~adkP-G-vy~~ 613 (635)
T PRK02888 552 FGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------V-NMEVAPQATASVTFTADKP-G-VYWY 613 (635)
T ss_pred cCCceEEecCCCEEEEEEEeCCcccccccceeecccC---------------c-cEEEcCCceEEEEEEcCCC-E-EEEE
Confidence 344556666666666666664221 11122222222 1 2467799999999998764 4 8888
Q ss_pred E
Q 016150 122 S 122 (394)
Q Consensus 122 ~ 122 (394)
.
T Consensus 614 ~ 614 (635)
T PRK02888 614 Y 614 (635)
T ss_pred E
Confidence 6
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.29 E-value=28 Score=26.16 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=11.5
Q ss_pred eEEecCCceEEEEEec
Q 016150 96 DMDIYSGESYSVLLTT 111 (394)
Q Consensus 96 ~l~l~~GqR~DVlv~~ 111 (394)
.|....|||||++|.-
T Consensus 17 ~l~f~sgq~~D~~v~d 32 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKD 32 (82)
T ss_dssp EEEESSS--EEEEEE-
T ss_pred EEEeCCCCEEEEEEEC
Confidence 4778999999999993
No 92
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=44.45 E-value=66 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=25.8
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCc
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNY 88 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~ 88 (394)
.||.+.++||+.+.+|++..+. +-.|...+.-+-++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~~-----lp~drEs~f~l~v~~IP 112 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKSG-----SPLNTEHLLRVSFEGVP 112 (230)
T ss_pred cCCeEEECCCCceEEEEEECCC-----CCCCeeEEEEEEEEEcC
Confidence 5789999999999999997653 12244444444444444
No 93
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.19 E-value=91 Score=28.37 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=43.6
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .|.| +|=+.| ...| +-||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-------iHsf-------~vp~l~-----------------~k~d---avPG~~~~~~~~ 185 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV-------IHSW-------TVPSLG-----------------VKVD---AVPGRLNQLNFL 185 (227)
T ss_pred ceEEEecCCEEEEEEEcCch-------hhhe-------eccccC-----------------Ceee---cCCCceEEEEEE
Confidence 45789999999999998764 3444 443222 1223 335777888999
Q ss_pred cCCceeeEeeeccch
Q 016150 340 ADNPGAWAFHCHIEP 354 (394)
Q Consensus 340 adnpG~w~~HCHil~ 354 (394)
++.||.+..-|.-+=
T Consensus 186 ~~~~G~y~g~Cse~C 200 (227)
T MTH00154 186 INRPGLFFGQCSEIC 200 (227)
T ss_pred EcCceEEEEEeechh
Confidence 999999999998554
No 94
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.63 E-value=1.6e+02 Score=26.83 Aligned_cols=68 Identities=12% Similarity=0.251 Sum_probs=47.5
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. . |.|+|-+.| ...| .-||....+.|.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-------i-------Hsf~vP~lg-----------------~K~D---avPG~~n~~~~~ 185 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDV-------L-------HSWAVPSLG-----------------VKTD---AVPGRLNQTSFI 185 (227)
T ss_pred ceEEEecCceEEEEEEecch-------h-------hcccccccC-----------------ceeE---ecCCceEEEEEE
Confidence 45788999999999998764 3 445553332 1222 345778888999
Q ss_pred cCCceeeEeeeccchhhhcCce
Q 016150 340 ADNPGAWAFHCHIEPHFHIGMG 361 (394)
Q Consensus 340 adnpG~w~~HCHil~H~~~GM~ 361 (394)
++.||.+.--|--+=-.....|
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M 207 (227)
T MTH00117 186 TTRPGVFYGQCSEICGANHSFM 207 (227)
T ss_pred EcccceEEEEeccccccCccCC
Confidence 9999999999987554443433
No 95
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=39.02 E-value=47 Score=22.09 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=25.8
Q ss_pred ecCCcEEEEEEEcCCceeeEeeeccchhhhc
Q 016150 328 IFPYGWTALRFVADNPGAWAFHCHIEPHFHI 358 (394)
Q Consensus 328 v~~~g~v~irf~adnpG~w~~HCHil~H~~~ 358 (394)
.+.|..+.+.++-..-..+=+||..+.|.+.
T Consensus 15 ~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 15 FPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred eCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3457788888888888999999999999764
No 96
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.01 E-value=94 Score=28.20 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=43.6
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++..|. .|.| +|=+.| ...| +-||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-------iHsf-------~vP~lg-----------------~k~d---aiPG~~n~~~~~ 185 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSADV-------LHSW-------TLPSLG-----------------LKMD---AVPGRLNQLAFL 185 (225)
T ss_pred ceEEEecCCEEEEEEEeCCh-------hhcc-------cccccc-----------------cccc---CCCCeEEEEEEE
Confidence 45789999999999998764 3444 442222 1223 335777788999
Q ss_pred cCCceeeEeeeccch
Q 016150 340 ADNPGAWAFHCHIEP 354 (394)
Q Consensus 340 adnpG~w~~HCHil~ 354 (394)
++.+|.+..-|.-+-
T Consensus 186 ~~~~G~~~g~CsE~C 200 (225)
T MTH00168 186 SSRPGSFYGQCSEIC 200 (225)
T ss_pred cCCCEEEEEEccccc
Confidence 999999999998543
No 97
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.94 E-value=1.6e+02 Score=26.89 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=43.9
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.+++.|. .|.|.+-.... .. .+-||....+.|.
T Consensus 144 n~lvlP~~~~v~~~itS~DV-------iHsf~vp~lg~------------------------k~---daiPG~~~~~~~~ 189 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV-------LHSFAVPSLSV------------------------KI---DAVPGRLNQTSFF 189 (234)
T ss_pred eEEEEecCcEEEEEEEeCch-------hccccccccCc------------------------ee---EccCCceEeEEEE
Confidence 45789999999999999864 45444433221 11 2335777788899
Q ss_pred cCCceeeEeeeccchh
Q 016150 340 ADNPGAWAFHCHIEPH 355 (394)
Q Consensus 340 adnpG~w~~HCHil~H 355 (394)
++.||.+-.-|.-+=-
T Consensus 190 ~~~~G~y~g~Cse~CG 205 (234)
T MTH00051 190 IKRPGVFYGQCSEICG 205 (234)
T ss_pred eCCCEEEEEEChhhcC
Confidence 9999999999986443
No 98
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=37.43 E-value=61 Score=29.54 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.2
Q ss_pred EEEecCCCeEEEEEeecCCcce--EEEEEeCceEEEEEeCCCccce
Q 016150 48 ILHVQPNKTYRLRIASTTALAS--LNLAVKNHKMVVVEADGNYVQP 91 (394)
Q Consensus 48 ~~~v~~g~~yRlRlINa~~~~~--~~l~id~h~m~VIa~DG~~v~P 91 (394)
.+-+++| +|.||+|.-+-.-. ...-| +.-++++|+|+.|.+.
T Consensus 95 PLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytqT 138 (310)
T PF15415_consen 95 PLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQT 138 (310)
T ss_pred ceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeEE
Confidence 3668897 89999998765432 22233 4468999999999853
No 99
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.25 E-value=1.9e+02 Score=22.06 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=32.5
Q ss_pred ecCCCeE--EEEEeecCCcc-eEEEEEeCceEEEEEeCCCcc--ceeEeceEEecCCceEEEEEecC
Q 016150 51 VQPNKTY--RLRIASTTALA-SLNLAVKNHKMVVVEADGNYV--QPFEVDDMDIYSGESYSVLLTTN 112 (394)
Q Consensus 51 v~~g~~y--RlRlINa~~~~-~~~l~id~h~m~VIa~DG~~v--~P~~~d~l~l~~GqR~DVlv~~~ 112 (394)
+..|++| .+.|.|.|... .+++..... ....+ +| ..=.|+||+..++-|.+.
T Consensus 16 v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~-------~~~~~~v~~---~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 16 VFVGQTYSRTVTLTNTSSIPARFRVRQPES-------LSSFFSVEP---PSGFLAPGESVELEVTFS 72 (102)
T ss_pred EccCCEEEEEEEEEECCCCCEEEEEEeCCc-------CCCCEEEEC---CCCEECCCCEEEEEEEEE
Confidence 5677777 58999999863 334443331 11111 22 234599999999888886
No 100
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=36.85 E-value=1.5e+02 Score=20.93 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=25.3
Q ss_pred eEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc
Q 016150 47 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 89 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v 89 (394)
..|+++.|+++++.+-+.+. +..|.|...+|..+
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~ 38 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSL 38 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSC
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCch
Confidence 57999999998888866665 44477777777654
No 101
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.69 E-value=1.1e+02 Score=28.42 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=43.3
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .| .|+|=+.| ...|.+ ||..-.+.|.
T Consensus 174 n~lvlP~~~~v~~~ltS~DV-------iH-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~ 219 (262)
T MTH00027 174 NRLILPVDTNVRVLITAADV-------LH-------SWTVPSLA-----------------VKMDAV---PGRINETGFL 219 (262)
T ss_pred ceEEEeeCcEEEEEEEcCcc-------cc-------ceeccccc-----------------CcccCC---CCceeeEEEE
Confidence 45788999999999998764 34 44543332 223332 4666778899
Q ss_pred cCCceeeEeeeccch
Q 016150 340 ADNPGAWAFHCHIEP 354 (394)
Q Consensus 340 adnpG~w~~HCHil~ 354 (394)
++.||.+.-.|+-.-
T Consensus 220 ~~~~G~y~g~CsE~C 234 (262)
T MTH00027 220 IKRPGIFYGQCSEIC 234 (262)
T ss_pred cCCcEEEEEEcchhc
Confidence 999999999999543
No 102
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=34.06 E-value=86 Score=28.73 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.9
Q ss_pred CceEEEecCCCeEEEEEeecC
Q 016150 45 APQILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~ 65 (394)
.||.|.++||+...||++..+
T Consensus 83 tPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 83 APPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 578999999999999999886
No 103
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.87 E-value=1.5e+02 Score=27.15 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=42.4
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .|.|.+-. .| ...|. -||....+.|.
T Consensus 143 n~l~lP~~~~v~~~itS~DV-------iHSf~vP~-------lg-----------------~K~Da---vPGr~n~~~~~ 188 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDV-------IHSWALPS-------LS-----------------IKMDA---MSGILSTLCYS 188 (231)
T ss_pred CceEeecCcEEEEEEEeCcc-------cccccccc-------cC-----------------ceeec---cCCceEEEEEE
Confidence 34688999999999998764 45444432 22 12232 24777788899
Q ss_pred cCCceeeEeeeccc
Q 016150 340 ADNPGAWAFHCHIE 353 (394)
Q Consensus 340 adnpG~w~~HCHil 353 (394)
++.||.+.--|.-.
T Consensus 189 ~~~~G~y~g~CsE~ 202 (231)
T MTH00080 189 FPMPGVFYGQCSEI 202 (231)
T ss_pred EcCceEEEEEehhh
Confidence 99999999999844
No 104
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=33.42 E-value=1.5e+02 Score=24.09 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCCe-EEEEEeecCCcceEEEEEeCceEEEEEeCCCccc------eeEeceEEecCCceEEEEEecCC
Q 016150 53 PNKT-YRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ------PFEVDDMDIYSGESYSVLLTTNQ 113 (394)
Q Consensus 53 ~g~~-yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~------P~~~d~l~l~~GqR~DVlv~~~~ 113 (394)
.|.+ ++|.|-|.|....---..++ +.+...||..+. ......+.|.||+..-+.|....
T Consensus 17 ~g~~~~~l~~tN~s~~~C~l~G~P~--v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 17 AGQRHATLTFTNTSDTPCTLYGYPG--VALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred CCccEEEEEEEECCCCcEEeccCCc--EEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 4444 58999999987553333333 555588888552 11345699999999999888764
No 105
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=33.03 E-value=20 Score=29.66 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.5
Q ss_pred ecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc
Q 016150 51 VQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 89 (394)
Q Consensus 51 v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v 89 (394)
.+.|.++|||||.---+. +|-=..|++||.++|...+
T Consensus 120 Y~~GaRVrlRl~DlELs~--rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSE--RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhh--hhhcCCccceEEecceeee
Confidence 568899999999765432 2222468999999999887
No 106
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=32.71 E-value=1.9e+02 Score=20.92 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=30.3
Q ss_pred ecCCCe--EEEEEeecCCcc--eEEEEEeCceEEEEEeCCCc--cceeEeceEEecCCceEE--EEEecCCC-CCcceEE
Q 016150 51 VQPNKT--YRLRIASTTALA--SLNLAVKNHKMVVVEADGNY--VQPFEVDDMDIYSGESYS--VLLTTNQD-PSYNYWI 121 (394)
Q Consensus 51 v~~g~~--yRlRlINa~~~~--~~~l~id~h~m~VIa~DG~~--v~P~~~d~l~l~~GqR~D--Vlv~~~~~-~~~~y~i 121 (394)
+++|+. +++.+-|.+... .+.++++ .=+|=- ..|..+. .|.|||... +-|+.+.+ ..++|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356655 578888988643 3444443 223333 2344444 789997654 45555443 3358988
Q ss_pred EEee
Q 016150 122 SAGV 125 (394)
Q Consensus 122 ~~~~ 125 (394)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
No 107
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=32.49 E-value=74 Score=28.96 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.4
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.|.++||+++.+|++..+.
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~ 97 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGP 97 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5789999999999999998764
No 108
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=32.21 E-value=83 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.2
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.++||++..+|++..+.
T Consensus 72 tPPl~rl~p~~~q~lRIi~~~~ 93 (228)
T PRK15208 72 TPPLFKLDPTKNNVLRIVNITN 93 (228)
T ss_pred CCCeEEECCCCccEEEEEECCC
Confidence 5788999999999999998764
No 109
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=31.95 E-value=1.5e+02 Score=29.81 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=33.1
Q ss_pred CeEEEEEeecCCc-ceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecC
Q 016150 55 KTYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 112 (394)
Q Consensus 55 ~~yRlRlINa~~~-~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~ 112 (394)
..|+++++|-+.. ..+.|+++|.+ |.-++- ..+.+.|.+||+.++-|...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 3489999998864 67888887743 222210 01278999999987666653
No 110
>PF08685 GON: GON domain; InterPro: IPR012314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The ADAMTSs (a disintegrin and metalloproteinase domain with thrombospondin type-1 modules) are a family of zinc dependent metalloproteinases that play important roles in a variety of normal and pathological conditions. These enzymes show a complex domain organisation including signal sequence, propeptide, metalloproteinase domain (see PDOC50215 from PROSITEDOC), disintegrin-like domain (see PDOC00351 from PROSITEDOC), central TS-1 motif (see PDOC50092 from PROSITEDOC), cysteine-rich region, and a variable number of TS-like repeats at the C-terminal region. The GON domain is an approximately 200-residue module, whose presence is the hallmark of a subfamily of structurally and evolutionarily related ADAMTSs, called GON- ADAMTSs. The GON domain is characterised by the presence of several conserved cysteine residues and is likely to be globular [], []. Some proteins known to contain a GON domain are listed below: Mammalian ADAMTS-9 Mammalian ADAMTS-20 Caenorhabditis elegans gon-1, a protease required for gonadal morphogenesis Proteins containing the GON domain belong to MEROPS peptidase subfamily M12B (adamalysin, clan MA).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding
Probab=31.41 E-value=65 Score=28.66 Aligned_cols=26 Identities=4% Similarity=0.123 Sum_probs=21.4
Q ss_pred CCcceEEEEEeCceEEEEEeCCCccc
Q 016150 65 TALASLNLAVKNHKMVVVEADGNYVQ 90 (394)
Q Consensus 65 ~~~~~~~l~id~h~m~VIa~DG~~v~ 90 (394)
|...+-+|+|+=++|.||..|-.+-+
T Consensus 89 G~T~F~KvRid~~tl~I~~~D~tFa~ 114 (201)
T PF08685_consen 89 GRTRFSKVRIDPSTLRIITNDFTFAR 114 (201)
T ss_pred ceeEEEEEEEcccccEEEeCCceEee
Confidence 44567889999999999999988863
No 111
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=31.04 E-value=99 Score=28.09 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.3
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.++||+++.+|++..+.
T Consensus 71 tPPl~rl~p~~~q~lRI~~~~~ 92 (226)
T PRK15295 71 TPPLFRLDAGQKNSIRVIRSGA 92 (226)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5789999999999999998763
No 112
>COG1470 Predicted membrane protein [Function unknown]
Probab=30.56 E-value=5.9e+02 Score=25.89 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=48.3
Q ss_pred ceEEEecCCC--eEEEEEeecCCc--ceEEEEEeCceEEEEEeCCCccceeEeceEEecCCce--EEEEEecCCC-CCcc
Q 016150 46 PQILHVQPNK--TYRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQD-PSYN 118 (394)
Q Consensus 46 ~~~~~v~~g~--~yRlRlINa~~~--~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR--~DVlv~~~~~-~~~~ 118 (394)
+..++.++|+ ..|+++-|.|.. .-+.+.|++-.=+=|.+|+.-+ +. |.||+| +++-++.+.+ ..++
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 3567778884 468899998875 4566666655446677776633 22 455665 5666666654 3458
Q ss_pred eEEEEeecC
Q 016150 119 YWISAGVRG 127 (394)
Q Consensus 119 y~i~~~~~~ 127 (394)
|.+......
T Consensus 461 Y~i~i~~ks 469 (513)
T COG1470 461 YRITITAKS 469 (513)
T ss_pred EEEEEEEee
Confidence 988876554
No 113
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=30.56 E-value=1.4e+02 Score=22.97 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=27.6
Q ss_pred eEEEEEeCCCcccee--EeceEEecCCceEEEEEecCCCCCcceEEEE
Q 016150 78 KMVVVEADGNYVQPF--EVDDMDIYSGESYSVLLTTNQDPSYNYWISA 123 (394)
Q Consensus 78 ~m~VIa~DG~~v~P~--~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~ 123 (394)
+|+-+..||..+.|. .-..+.|.++|+..|-...+.....+|.|..
T Consensus 45 rf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ap~~~A~~~Rlyl 92 (94)
T PF07233_consen 45 RFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVAPNPEAKDFRLYL 92 (94)
T ss_dssp EEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-SSTT--EEEEEE
T ss_pred EEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEECCCCCeEEEEEEE
Confidence 567777888887655 4478999999999999888766555777764
No 114
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=30.51 E-value=1.1e+02 Score=28.22 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.5
Q ss_pred CceEEEecCCCeEEEEEeec
Q 016150 45 APQILHVQPNKTYRLRIAST 64 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa 64 (394)
.||.|.++||++..||++-.
T Consensus 67 tPPlfrl~p~~~~~lRI~~~ 86 (239)
T PRK15254 67 LPPLQRIDAGQKSQVRITQV 86 (239)
T ss_pred cCCeEEECCCCceEEEEEEc
Confidence 57889999999999999865
No 115
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=30.45 E-value=98 Score=25.63 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=25.8
Q ss_pred eEEEecCCCeE--EEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEe
Q 016150 47 QILHVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV 94 (394)
Q Consensus 47 ~~~~v~~g~~y--RlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~ 94 (394)
.+|.++.|-+| +.+|.|+++- . . -+...+.|-.+||.-+.|...
T Consensus 75 a~~~~~~gG~y~~~VeLCN~~GC-S--~-S~~~~V~VaDTDGsHl~pL~~ 120 (133)
T PF08329_consen 75 ATFTVTKGGRYQMQVELCNADGC-S--T-SAPVEVVVADTDGSHLAPLPY 120 (133)
T ss_dssp EEEEE-S-EEEEEEEEEEETTEE-E--E----EEEEEE-TTSTTS-----
T ss_pred EEEEecCCCEEEEEEEEECCCCc-c--c-CCCEEEEEeCCCccccccccC
Confidence 37899988786 6789999982 1 1 125678888999999988644
No 116
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.40 E-value=97 Score=28.32 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=28.6
Q ss_pred CceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc
Q 016150 45 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 89 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v 89 (394)
.||.|.++||+...+|++..+. .+--|...+.-+-+++.+-
T Consensus 79 tPPv~rl~p~~~q~vRi~~~~~----~lP~drEslf~lnv~eIPp 119 (235)
T COG3121 79 TPPVFRLEPGQEQQLRILYTGN----KLPADRESLFRLNVDEIPP 119 (235)
T ss_pred cCCeEEECCCCccEEEEEecCC----CCCCCceeEEEEEeeecCC
Confidence 5789999999999999999995 2233444444445555543
No 117
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=30.32 E-value=1e+02 Score=27.99 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.3
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.+++|++..+|++..+.
T Consensus 75 tPPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 75 TPPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred cCCeEEECCCCccEEEEEECCC
Confidence 4789999999999999998864
No 118
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.81 E-value=2.6e+02 Score=25.42 Aligned_cols=63 Identities=14% Similarity=0.295 Sum_probs=44.0
Q ss_pred ceEEccCCCEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEE
Q 016150 260 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 339 (394)
Q Consensus 260 ~~~~~~~g~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~ 339 (394)
+.+.++.|+.+++.++-.|. .|. |.|=+.| ...| .-||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-------iHs-------f~vP~lg-----------------~k~d---a~PG~~n~~~~~ 185 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDV-------LHS-------WAVPSLG-----------------IKTD---AIPGRLNQTSFI 185 (228)
T ss_pred ceEEEecCCEEEEEEEeccc-------ccc-------ccccccC-----------------ceEE---ccCCcceeEEEE
Confidence 45789999999999998764 444 4443222 1112 335777788899
Q ss_pred cCCceeeEeeeccchhh
Q 016150 340 ADNPGAWAFHCHIEPHF 356 (394)
Q Consensus 340 adnpG~w~~HCHil~H~ 356 (394)
++.||.+..-|.-.-..
T Consensus 186 ~~~~G~~~g~C~e~CG~ 202 (228)
T MTH00076 186 ASRPGVYYGQCSEICGA 202 (228)
T ss_pred eCCcEEEEEEChhhcCc
Confidence 99999999999875443
No 119
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=28.07 E-value=1.2e+02 Score=27.73 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.1
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.+++|+.+.||++..+.
T Consensus 79 tPPlfrl~p~~~~~lRI~~~~~ 100 (234)
T PRK15192 79 TPPLFMLSARQENSMRVVYTGA 100 (234)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5788999999999999998764
No 120
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=26.33 E-value=2e+02 Score=29.03 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=26.1
Q ss_pred eeEecCCcEEEEEEEcCCceeeEeee----ccchhhhcCce
Q 016150 325 TAVIFPYGWTALRFVADNPGAWAFHC----HIEPHFHIGMG 361 (394)
Q Consensus 325 Tv~v~~~g~v~irf~adnpG~w~~HC----Hil~H~~~GM~ 361 (394)
.+.+.|....++-|.++-||.|.+-| |.+.-+..|=|
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 34567788889999999999998754 54443444433
No 121
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=26.03 E-value=2.1e+02 Score=22.13 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=36.2
Q ss_pred eEEEEEeCCCcccee--EeceEEecCCceEEEEEecCCCCCcceEEE
Q 016150 78 KMVVVEADGNYVQPF--EVDDMDIYSGESYSVLLTTNQDPSYNYWIS 122 (394)
Q Consensus 78 ~m~VIa~DG~~v~P~--~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~ 122 (394)
+|+-+..||-.+.|. .-..+.|.++|+..|--.++.....+|.|.
T Consensus 53 rf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ap~~~a~~~Rly 99 (101)
T cd09030 53 RFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAVAPNPEAKDFRLY 99 (101)
T ss_pred EEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEEcCCCCeEEEEEE
Confidence 688889999999875 347899999999999888876555577665
No 122
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=25.62 E-value=1e+02 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.9
Q ss_pred CceEEEecCCCeEEEEEeecC
Q 016150 45 APQILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~ 65 (394)
.||.|.++||++..+|++..+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred cCCeEEecCCCceEEEEEEcC
Confidence 578999999999999999875
No 123
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=25.56 E-value=1.6e+02 Score=22.54 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=32.1
Q ss_pred CEEEEEEecCCcCCCCCCCCCCeeecCCCeEEEeecCCCCCchhhcccCCCCCCCcceeEecCCcEEEEEEEcCCcee
Q 016150 268 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGA 345 (394)
Q Consensus 268 ~~ve~vi~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~v~~~g~v~irf~adnpG~ 345 (394)
..+...+.|.+ .+|.+||=.-+| ....+- ........|+ ++.|++++.+.|...+-+|..
T Consensus 26 ~~~~~~l~N~~--------~~~~~l~Yrf~W-yD~~G~--------~v~~~~~~w~-~~~l~~~~~~~l~~~ap~~~A 85 (94)
T PF07233_consen 26 LRAQATLSNKS--------SKPLTLQYRFYW-YDKQGL--------EVDPEQSPWQ-SLTLPGGQTVTLSAVAPNPEA 85 (94)
T ss_dssp EEEEEEEEE-S--------SS-EEEEEEEEE-E-TTS---------EE--TT---E-EEEE-TT-EEEEEEE-SSTT-
T ss_pred EEEEEEEEECC--------CCcEEEEEEEEE-ECCCCC--------CcCCCCCCCE-EEEEcCCCEEEEEEECCCCCe
Confidence 35667788875 789999854444 433111 1111223577 799999999999999888754
No 124
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=25.41 E-value=1.7e+02 Score=22.10 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=25.5
Q ss_pred EEecCCCeEEEEEeecCCcceEEEEEeCceEEE-EEeCCCcc
Q 016150 49 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYV 89 (394)
Q Consensus 49 ~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~V-Ia~DG~~v 89 (394)
-.++||++.+|.+=..+-...+.+..+.....+ -..||+|.
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSDGSFS 82 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TTS-EE
T ss_pred hhCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCCCCEE
Confidence 347999999999887777888888888665433 34688874
No 125
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=25.40 E-value=1.4e+02 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.5
Q ss_pred eeEecCCcEEEEEEEcCCceeeEeeeccch
Q 016150 325 TAVIFPYGWTALRFVADNPGAWAFHCHIEP 354 (394)
Q Consensus 325 Tv~v~~~g~v~irf~adnpG~w~~HCHil~ 354 (394)
...|.+|+...+.|+.+..|.-+|.|++.+
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~ 57 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW 57 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE
Confidence 346888999999999888899999999998
No 126
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=25.00 E-value=1.8e+02 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=22.9
Q ss_pred eEEEEEeecCCcceEEEEEeCceEEEEEeCCCcc--c-e-eEeceEEecCCceEE
Q 016150 56 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--Q-P-FEVDDMDIYSGESYS 106 (394)
Q Consensus 56 ~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v--~-P-~~~d~l~l~~GqR~D 106 (394)
.|++||-|.+... +.+-.....|...||..- + + +.-..=.|.|||.|.
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~ 66 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFE 66 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEE
Confidence 4899999999873 334344444444444221 0 1 001223578888654
No 127
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=24.88 E-value=1.3e+02 Score=27.43 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.8
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.++||+...+|++-.+.
T Consensus 73 tPPlfrl~p~~~q~lRI~~~~~ 94 (229)
T PRK15211 73 APPFFKVRPKEKQIIRIMKTDS 94 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5788999999999999998764
No 128
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=24.55 E-value=1e+02 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=19.5
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.+.++||++..||++..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 5788999999999999998875
No 129
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=24.27 E-value=1.3e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=23.6
Q ss_pred CceEEEecCCCeEEEEEeecCCc-----ceEEEEEeCc
Q 016150 45 APQILHVQPNKTYRLRIASTTAL-----ASLNLAVKNH 77 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~~-----~~~~l~id~h 77 (394)
.|+.+.++||++..+|++..+.. ..++|.+...
T Consensus 54 sPp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~i 91 (122)
T PF00345_consen 54 SPPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREI 91 (122)
T ss_dssp ESSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEE
T ss_pred eCCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEE
Confidence 46789999999999999885542 3455555443
No 130
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=24.23 E-value=1.1e+02 Score=19.35 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.6
Q ss_pred eEEEecCCCeEEEEEeecC
Q 016150 47 QILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 47 ~~~~v~~g~~yRlRlINa~ 65 (394)
...-.-.|+.||||+-.++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 3566778999999987654
No 131
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.21 E-value=90 Score=26.14 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=20.9
Q ss_pred ecCCcEEEEEEEc-CCc---eeeEeeeccc
Q 016150 328 IFPYGWTALRFVA-DNP---GAWAFHCHIE 353 (394)
Q Consensus 328 v~~~g~v~irf~a-dnp---G~w~~HCHil 353 (394)
|+||..+.|.++. .|| |.|+|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 8899999999963 455 9999998643
No 132
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=23.68 E-value=1.8e+02 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=16.7
Q ss_pred CceEEEecCCCeEEEEEeec
Q 016150 45 APQILHVQPNKTYRLRIAST 64 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa 64 (394)
.|..+.|++|.+++|...+.
T Consensus 13 ~P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 13 EPAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred eCCEEEECCCCEEEEEECCC
Confidence 46789999999988887775
No 133
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=23.16 E-value=1.6e+02 Score=27.01 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.4
Q ss_pred CceEEEecCCCeEEEEEeecC
Q 016150 45 APQILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~ 65 (394)
.||.+.++||++..||++..+
T Consensus 90 tPPlfrl~p~~~q~lRIi~~~ 110 (243)
T PRK15290 90 IPPVSRLEPSQEKVLRIIHTK 110 (243)
T ss_pred cCCeEEECCCCceEEEEEEcC
Confidence 478899999999999999875
No 134
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=22.53 E-value=1.9e+02 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.2
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.|.++||+...||++..+.
T Consensus 73 tPPlfRl~p~~~~~lRI~~~~~ 94 (226)
T PRK15218 73 TPPVIRVAANSGQQLKIKKLAN 94 (226)
T ss_pred CCCeEEECCCCceEEEEEECCC
Confidence 5789999999999999998763
No 135
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=22.32 E-value=1.9e+02 Score=26.65 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.1
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.|.++||+...||++..+.
T Consensus 88 tPPlfRl~p~~~~~lRI~~~~~ 109 (242)
T PRK15253 88 TPPVARVAAESGQQIKIKKMPN 109 (242)
T ss_pred CCCeEEECCCCceEEEEEECCC
Confidence 5789999999999999997763
No 136
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=22.18 E-value=4.2e+02 Score=21.27 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=40.5
Q ss_pred ceEEEecCCCeEEEEEeecCCcceEEEEEeCceEEEEEeCCCccceeEeceEEecCCceEEEEEecCCCCCcceEEEEe
Q 016150 46 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 124 (394)
Q Consensus 46 ~~~~~v~~g~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~~d~l~l~~GqR~DVlv~~~~~~~~~y~i~~~ 124 (394)
...+.++.|+.++|+|-+..... .|.|++..+.+ .+-||+.-.+-+++++ +| .|+++-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DViH--sf~ip~~~~k~----------------d~~PG~~~~~~~~~~~-~G-~y~~~C~ 103 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDVIH--SFWIPELGIKM----------------DAIPGRTNSVTFTPDK-PG-TYYGQCA 103 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-E--EEEETTCTEEE----------------EEBTTCEEEEEEEESS-SE-EEEEEE-
T ss_pred cceecccccceEeEEEEcCCccc--cccccccCccc----------------ccccccceeeeeeecc-CC-cEEEcCc
Confidence 35799999999999999977664 45566655443 3456777777777765 34 8888754
No 137
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=22.05 E-value=1.9e+02 Score=26.67 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=18.4
Q ss_pred CceEEEecCCCeEEEEEeecC
Q 016150 45 APQILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~ 65 (394)
.||.|.++||+...||++..+
T Consensus 77 tPPlfRl~p~~~~~lRI~~~~ 97 (250)
T PRK15285 77 VPPVQRIEPSAIGQVKIQGMP 97 (250)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 578899999999999999775
No 138
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=21.79 E-value=3e+02 Score=22.51 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=28.0
Q ss_pred eEEEEEeecCCcceEEEEEeCceEEEEEeCCCccc----eeEeceEEecCCceEEE
Q 016150 56 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ----PFEVDDMDIYSGESYSV 107 (394)
Q Consensus 56 ~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~----P~~~d~l~l~~GqR~DV 107 (394)
.|+.|+-|-+.. .+.+-...-.|...||..-+ -+.-..=.|.|||.|.-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 488999998754 34455555556555554221 11123336788886653
No 139
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=21.23 E-value=2e+02 Score=26.77 Aligned_cols=21 Identities=10% Similarity=0.404 Sum_probs=18.5
Q ss_pred CceEEEecCCCeEEEEEeecC
Q 016150 45 APQILHVQPNKTYRLRIASTT 65 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~ 65 (394)
.||.|.++||+...||++..+
T Consensus 78 tPPLfRlep~~~q~lRI~~~~ 98 (257)
T PRK15274 78 LPPLQRIEPKSDGQVKVQPLP 98 (257)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 578999999999999999775
No 140
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.55 E-value=2.3e+02 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.5
Q ss_pred CceEEEecCCCeEEEEEeecCC
Q 016150 45 APQILHVQPNKTYRLRIASTTA 66 (394)
Q Consensus 45 ~~~~~~v~~g~~yRlRlINa~~ 66 (394)
.||.|.+++|+++.||++-.+.
T Consensus 78 tPPlfrl~~~~~~~lRI~~~~~ 99 (228)
T PRK15188 78 TPPLFVIQPKKENILRIMYVGP 99 (228)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 5788999999999999997653
No 141
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=20.21 E-value=4.5e+02 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=18.5
Q ss_pred ecCCC----eEEEEEeecCCcceEEEEEe
Q 016150 51 VQPNK----TYRLRIASTTALASLNLAVK 75 (394)
Q Consensus 51 v~~g~----~yRlRlINa~~~~~~~l~id 75 (394)
++||+ .+|+++.|--+-..+..++.
T Consensus 32 ~kpGkhg~a~vr~k~knL~tG~~~e~~~~ 60 (129)
T PRK03999 32 SKPGKHGSAKARIVAIGIFDGQKRSLVQP 60 (129)
T ss_pred ecCCCCCcEEEEEEEEECCCCCEEEEEec
Confidence 67887 68888888877666666654
Done!