BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016153
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 179/363 (49%), Gaps = 53/363 (14%)
Query: 50 ADKSCHCAQEKDKYSGVVEDCCCDYETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDC 109
A + C C + SG ++DC CD ET+++ N L P LQ+L+++ +FRY+KV L C
Sbjct: 28 AAQRCFC-----QVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPC 82
Query: 110 PFWPDDGMCRLRDCSVCECPETEFPESFKKPFIRGLSSDDLACQEGKPE---AAVDRTLD 166
PFW D C RDC+V E P+ K + + +E + AVD +L
Sbjct: 83 PFWNDISQCGRRDCAVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLS 142
Query: 167 SQ---AFRGWTETDNP---WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYS 220
+ A WT+ D+ + D+ + E YV+L LNPERYTGY GP A +IW+ IY
Sbjct: 143 EETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYE 202
Query: 221 ENC--------PTYP--SKQ--------------LCQEERILYKXXXXXXXXXXXXXAAD 256
ENC P P S Q LC E+R Y+ +A
Sbjct: 203 ENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSAR 262
Query: 257 YLLDEA--NNLWGQNLTLM---YDRVL---RYPDRVRNLYFTFLFVLRAVTKAAEYLEQA 308
YLL E WG N+T +D +L P R++NLYF +L LRA++K + E+
Sbjct: 263 YLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERP 322
Query: 309 EYE--TGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQR--GPELKQKIQGQF 364
+++ TGN ++D + + L+ ++L+ + + PL FDE + G + +LK+ + F
Sbjct: 323 DFQLFTGNKIQDEENKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHF 379
Query: 365 RNI 367
RNI
Sbjct: 380 RNI 382
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 182/363 (50%), Gaps = 53/363 (14%)
Query: 50 ADKSCHCAQEKDKYSGVVEDCCCDYETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDC 109
A + C C + SG ++DC CD ET+++ N L P LQ+L+++ +FRY+KV L C
Sbjct: 28 AAQRCFC-----QVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPC 82
Query: 110 PFWPDDGMCRLRDCSVCECPETEFPESFKKPFIR-GLSSDDLA--CQEGKPEAAVDRTLD 166
PFW D C RD +V E P+ K + +++L C++ + AVD +L
Sbjct: 83 PFWNDISQCGRRDAAVKPAQSDEVPDGIKSASYKYSEEANNLIEECEQAERLGAVDESLS 142
Query: 167 SQ---AFRGWTETDNP---WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYS 220
+ A WT+ D+ + D+ + E YV+L LNPERYTGY GP A +IW+ IY
Sbjct: 143 EETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYE 202
Query: 221 ENC--------PTYP--SKQ--------------LCQEERILYKXXXXXXXXXXXXXAAD 256
ENC P P S Q LC E+R Y+ +A
Sbjct: 203 ENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSAR 262
Query: 257 YLLDEA--NNLWGQNLTLM---YDRVL---RYPDRVRNLYFTFLFVLRAVTKAAEYLEQA 308
YLL E WG N+T +D +L P R++NLYF +L LRA++K + E+
Sbjct: 263 YLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERP 322
Query: 309 EYE--TGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQR--GPELKQKIQGQF 364
+++ TGN ++D + + L+ ++L+ + + PL FDE + G + +LK+ + F
Sbjct: 323 DFQLFTGNKIQDEENKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHF 379
Query: 365 RNI 367
RNI
Sbjct: 380 RNI 382
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P
Length = 393
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 74 YETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDCPFW-PDDGMCRLRDCSVCECPETE 132
+ +N +NE + L L+K+ FF+YF++ L+ C FW +DG+C R CSV + +
Sbjct: 18 FNELNAINENI-RDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 133 FPESFKKPFIRGLSSDDLACQEGKPEAAVDRTLDS--QAFRGWTETDNPWTHDDETD--N 188
+ +P I G ++D +E + LD Q + + ++ + D D
Sbjct: 77 TLPEYWQPEILGSFNND-TMKEADDSDDEAKFLDQLCQTSKKPVDIEDTINYADVNDFNG 135
Query: 189 AEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPSKQLCQEERILYKXXXXXXXX 248
++L NPER+TGY G A +IW IY +NC T + Y+
Sbjct: 136 KNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKDAFYRLVSGFHAS 195
Query: 249 XXXXXAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQA 308
+ +Y L+ W NL L R+ +PDRV N+YF + V +A+ K YL +
Sbjct: 196 IGTHLSKEY-LNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEF 254
Query: 309 EY------ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQG 362
+ E N M+++ +Q + ++N L A L LK + +
Sbjct: 255 SFCDLVNKEIKNKMDNVISQ--LDTKIFNEDLVFANDLSL------------TLKDEFRS 300
Query: 363 QFRNI 367
+F+N+
Sbjct: 301 RFKNV 305
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 28/305 (9%)
Query: 74 YETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDCPFW-PDDGMCRLRDCSVCECPETE 132
+ +N +NE + L L+K+ FF+YF++ L+ C FW +DG+C R CSV + +
Sbjct: 17 FNELNAINENI-RDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 75
Query: 133 FPESFKKPFIRGLSSDDLACQEGKPEAAVDRTLD--SQAFRGWTETDNPWTHDDETD--N 188
+ +P I G ++D +E + LD +Q + + ++ + D D
Sbjct: 76 TLPEYWQPEILGSFNND-TMKEADDSDDECKFLDQLAQTSKKPVDIEDTINYCDVNDFNG 134
Query: 189 AEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPSKQLCQEERILYKXXXXXXXX 248
++L NPER+TGY G A +IW IY +NC T + Y+
Sbjct: 135 KNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESLAKDAFYRLVSGFHAS 194
Query: 249 XXXXXAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQA 308
+ +Y L+ W NL L R+ +PDRV N+YF + V +A+ K YL +
Sbjct: 195 IGTHLSKEY-LNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEF 253
Query: 309 EY------ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQG 362
+ E N M+++ +Q + ++N L A L LK + +
Sbjct: 254 SFADLVNKEIKNKMDNVISQ--LDTKIFNEDLVFANDLSL------------TLKDEFRS 299
Query: 363 QFRNI 367
+F+N+
Sbjct: 300 RFKNV 304
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 386
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 136/320 (42%), Gaps = 58/320 (18%)
Query: 74 YETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDCPFW-PDDGMCRLRDCSVCECPETE 132
+ +N +NE + L L+K+ FF+YF++ L+ C FW +DG+C R CSV + +
Sbjct: 18 FNELNAINENI-RDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 133 -FPESFKKPFIRGLSSD---------------DLACQEGKPEAAVDRTL---DSQAFRGW 173
PE ++ + ++D D CQ K ++ T+ D F G
Sbjct: 77 TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNG- 135
Query: 174 TETDNPWTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPSKQLCQ 233
NA + ++L NPER+TGY G A +IW IY +NC T
Sbjct: 136 -------------KNAVL--IDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESL 180
Query: 234 EERILYKXXXXXXXXXXXXXAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLF 293
+ Y+ + +Y L+ W NL L R+ +PDRV N+YF +
Sbjct: 181 AKDAFYRLVSGFHASIGTHLSKEY-LNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAV 239
Query: 294 VLRAVTKAAEYLEQAEY------ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKL 347
V +A+ K YL + + E N M+++ +Q + ++N L A L
Sbjct: 240 VAKALWKIQPYLPEFSFCDLVNKEIKNKMDNVISQ--LDTKIFNEDLVFANDLSL----- 292
Query: 348 WKGQRGPELKQKIQGQFRNI 367
LK + + +F+N+
Sbjct: 293 -------TLKDEFRSRFKNV 305
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 389
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 131/318 (41%), Gaps = 54/318 (16%)
Query: 74 YETVNQLNEQVLHPSLQELVKTPFFRYFKVKLWCDCPFW-PDDGMCRLRDCSVCECPETE 132
+ +N +NE + L L+K+ FF+YF++ L+ C FW +DG+C R CSV + +
Sbjct: 18 FNELNAINENI-RDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 76
Query: 133 -FPESFKKPFIRGLSSD---------------DLACQEGKPEAAVDRTL---DSQAFRGW 173
PE ++ + ++D D CQ K ++ T+ D F G
Sbjct: 77 TLPEYWQPEILGSFNNDTXKEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNG- 135
Query: 174 TETDNPWTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPSKQLCQ 233
++L NPER+TGY G A +IW IY +NC T
Sbjct: 136 ---------------KNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGETGESL 180
Query: 234 EERILYKXXXXXXXXXXXXXAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLF 293
+ Y+ + +Y L+ W NL L R+ +PDRV N YF +
Sbjct: 181 AKDAFYRLVSGFHASIGTHLSKEY-LNTKTGKWEPNLDLFXARIGNFPDRVTNXYFNYAV 239
Query: 294 VLRAVTKAAEYLEQAEY-ETGNPMEDLKTQSLMKQL---LYNPQLQAACPLPFDEAKLWK 349
V +A+ K YL + + + N K +++ QL ++N L A L
Sbjct: 240 VAKALWKIQPYLPEFSFCDLVNKEIKNKXDNVISQLDTKIFNEDLVFANDLSL------- 292
Query: 350 GQRGPELKQKIQGQFRNI 367
LK + + +F+N+
Sbjct: 293 -----TLKDEFRSRFKNV 305
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 286 NLYFTFLFVLRAVTKAAEYLEQAEYETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEA 345
NLYF + +LRA + E +++ + +DL S++ + P A +PF
Sbjct: 17 NLYFQSMRLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVP----ATAMPFRGY 72
Query: 346 KLWKGQR-GPELKQKIQGQFRNIRLCSN 372
+ G+R GPE++Q G+ +CS
Sbjct: 73 AVLGGERGGPEVQQVPAGERPLWFICSG 100
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 286 NLYFTFLFVLRAVTKAAEYLEQAEYETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEA 345
NLYF + +LRA + E +++ + +DL S++ + P A +PF
Sbjct: 17 NLYFQSMRLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVP----ATAMPFRGY 72
Query: 346 KLWKGQR-GPELKQKIQGQFRNIRLCSN 372
+ G+R GPE++Q G+ +CS
Sbjct: 73 AVLGGERGGPEVQQVPAGERPLWFICSG 100
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 149 DLACQEGKPEAAVDRTLDSQAFRGWTETDNPWTHDDETDNAEMTY-VNLQLNPERYTGYT 207
DLA + D+ + + F G DN H+D +N MT + L+L G +
Sbjct: 393 DLAATDNNQHINWDKVAELKPFGGIRIEDNIIVHEDSLEN--MTRELRLRLTTHSLRGLS 450
Query: 208 GPSARRIWDAIYSENCPTYPSKQLCQEERI 237
P A+ SE +YPS+ L EE I
Sbjct: 451 APQFSINDPAVMSEY--SYPSEPLSYEEEI 478
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,705,043
Number of Sequences: 62578
Number of extensions: 463454
Number of successful extensions: 967
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 11
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)