Query 016153
Match_columns 394
No_of_seqs 147 out of 254
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 2E-115 5E-120 874.8 20.9 340 17-375 2-357 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 3E-106 7E-111 806.1 11.0 286 84-375 2-300 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 3E-76 6.5E-81 578.5 11.6 284 64-375 22-313 (425)
4 PF14812 PBP1_TM: Transmembran 55.0 0.81 1.8E-05 37.9 -4.0 17 14-30 62-78 (81)
5 PF15240 Pro-rich: Proline-ric 43.7 16 0.00034 34.6 2.0 17 22-40 2-18 (179)
6 PF15264 TSSC4: Tumour suppres 41.9 10 0.00022 33.3 0.5 13 197-209 58-70 (115)
7 PRK13717 conjugal transfer pro 35.3 36 0.00079 30.6 2.9 31 7-37 5-36 (128)
8 PF13024 DUF3884: Protein of u 34.7 15 0.00033 30.2 0.4 36 353-390 42-77 (77)
9 PF04282 DUF438: Family of unk 34.4 20 0.00043 29.0 1.0 21 349-369 11-31 (71)
10 TIGR02106 cyd_oper_ybgT cyd op 30.4 59 0.0013 22.3 2.6 17 20-36 5-21 (30)
11 PF12555 TPPK_C: Thiamine pyro 29.2 56 0.0012 24.7 2.6 19 18-36 15-34 (53)
12 PHA02450 hypothetical protein 27.5 16 0.00034 27.5 -0.6 23 197-222 4-26 (53)
13 PRK02710 plastocyanin; Provisi 26.7 60 0.0013 27.9 2.8 21 17-37 3-23 (119)
14 PRK13673 hypothetical protein; 24.9 65 0.0014 28.5 2.7 29 7-35 82-111 (118)
15 PF13124 DUF3963: Protein of u 24.9 95 0.0021 22.3 2.9 29 272-300 7-36 (40)
16 PF12273 RCR: Chitin synthesis 24.8 50 0.0011 28.8 2.0 6 18-23 1-6 (130)
17 PF08173 YbgT_YccB: Membrane b 24.4 89 0.0019 21.1 2.6 17 20-36 5-21 (28)
18 KOG0910 Thioredoxin-like prote 21.0 67 0.0015 29.6 2.0 32 84-115 78-111 (150)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-115 Score=874.85 Aligned_cols=340 Identities=47% Similarity=0.851 Sum_probs=309.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCccccccccCccccHHhHHHhhhhhhhHhHHHhhcCC
Q 016153 17 TRWSLLVGALIAILIAVALAYALKSPNLSHFAPADKSCHCAQEKDKYSGVVEDCCCDYETVNQLNEQVLHPSLQELVKTP 96 (394)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~G~v~dc~c~~etId~~N~~~l~p~L~~Lv~td 96 (394)
+||.++++++.++.+++.++. .+.. ..|||+ +.|+|+||+||++||+++|+++|+|+|+.|+++|
T Consensus 2 ~r~~~l~~l~~~~~l~~~v~~--------~~~~--~~~~ck-----~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~ksd 66 (469)
T KOG2608|consen 2 KRAIALLGLIAAVKLISVVNT--------QFAS--SICFCK-----VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLKSD 66 (469)
T ss_pred chhHHHHHHHHHHHHHHhccc--------cccc--cceeee-----cccccccCCCCHHHHHHhhccccchHHHHHhccc
Confidence 458888888888888887742 1222 689999 7899999999999999999999999999999999
Q ss_pred CceeEeecCCCCCCCCCCCCCCCCCCCccccCCCCCCCcCCCcccccCCCC-CchhhhcCCC-ccccccccchhhhcCcc
Q 016153 97 FFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPETEFPESFKKPFIRGLSS-DDLACQEGKP-EAAVDRTLDSQAFRGWT 174 (394)
Q Consensus 97 fFRyfKVNL~k~CPFW~dd~~C~~~~C~V~~cde~eiPe~wr~~~~~~~~~-~~~~c~~~~~-~~~vd~tl~~~~~~~w~ 174 (394)
|||||||||+++||||+|+++|++++|+|++|+|++||++|+++ +++++. .-..|..+.+ .+++|++++.++|..|.
T Consensus 67 ffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~-~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w~ 145 (469)
T KOG2608|consen 67 FFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKS-LGKYEPELCSECEDADSELGAKDRTLSDRAFLLWD 145 (469)
T ss_pred chhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhh-hhccChhhhhhhhhccccccchhcccccccccccc
Confidence 99999999999999999999999999999999999999999994 344544 2245555655 78899999999999999
Q ss_pred ccCCC-CCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------------CcchhhHHHHHHHH
Q 016153 175 ETDNP-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYP------------SKQLCQEERILYKL 241 (394)
Q Consensus 175 ~~d~~-~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------------~~~~ClEkrvFYRL 241 (394)
.+|+. ||+.|++++++++||||++||||||||+|++|+|||++||+||||++. .+++|+||||||||
T Consensus 146 ~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYrL 225 (469)
T KOG2608|consen 146 KHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYRL 225 (469)
T ss_pred ccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHHH
Confidence 99998 999998889999999999999999999999999999999999999875 15899999999999
Q ss_pred hhhhhHHHHHHHHhhhccccccCccCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhccCCCCccccHHH
Q 016153 242 ISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEYETGNPMEDLKT 321 (394)
Q Consensus 242 ISGLHaSIsiHl~~~Yl~d~~~~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~L~~~~f~tG~~~eD~~t 321 (394)
||||||||+||||++|++-+.+..||||+++|++||++||+||+||||+|++|+|||.||+|||++.+|+||+..||++|
T Consensus 226 ISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e~ 305 (469)
T KOG2608|consen 226 ISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAET 305 (469)
T ss_pred HHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchHH
Confidence 99999999999999666434343799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccCCCCCCcccCCCCC-CCChhHHHHHhhcccccccccccc
Q 016153 322 QSLMKQLLYNPQLQAACPLPFDEAKLWKGQ-RGPELKQKIQGQFRNIRLCSNPSR 375 (394)
Q Consensus 322 ~~lv~~Ll~~~~~~~~cp~~FDE~~lF~~~-~a~~LKeeFr~~FrNISrIMD~~~ 375 (394)
+.+|.++++.++ +||.||||+.||+|+ .|++||||||+|||||||||||||
T Consensus 306 k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVg 357 (469)
T KOG2608|consen 306 KSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVG 357 (469)
T ss_pred HHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 999999999865 699999999999999 789999999999999999999997
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=3.1e-106 Score=806.09 Aligned_cols=286 Identities=50% Similarity=0.942 Sum_probs=228.0
Q ss_pred hhhHhHHHhhcCCCceeEeecCCCCCCCCCCC-CCCCCCCCccccCCCCCCCcCCCcccccCCCCCchhhhcCCCccccc
Q 016153 84 VLHPSLQELVKTPFFRYFKVKLWCDCPFWPDD-GMCRLRDCSVCECPETEFPESFKKPFIRGLSSDDLACQEGKPEAAVD 162 (394)
Q Consensus 84 ~l~p~L~~Lv~tdfFRyfKVNL~k~CPFW~dd-~~C~~~~C~V~~cde~eiPe~wr~~~~~~~~~~~~~c~~~~~~~~vd 162 (394)
+|+|+|++|+++||||||||||+++||||+++ ++|++++|+|++|+++|||+.||+ .++++.. ..|.+++.+..++
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~-~~~~~~~--~~~~~~~~~~~~~ 78 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRA-ELSKLEQ--SACEEGSDQSDLD 78 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSH-HHTS--T--TTECCHCCHCSGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCccccc-ccccccc--hhcccccchhhhc
Confidence 58999999999999999999999999999998 999999999999999999999999 5554433 2344444455677
Q ss_pred cccch-hhhcCccccCC-C-CCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC-------cchh
Q 016153 163 RTLDS-QAFRGWTETDN-P-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPS-------KQLC 232 (394)
Q Consensus 163 ~tl~~-~~~~~w~~~d~-~-~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C 232 (394)
.+++. ..+..|..+++ . ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C 158 (357)
T PF04137_consen 79 RTLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMC 158 (357)
T ss_dssp GSBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------H
T ss_pred CChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCcccccccccccc
Confidence 77776 67888887764 2 7876666678999999999999999999999999999999999997643 4799
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHhhhccccc--cCccCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 016153 233 QEERILYKLISGLHSSISIHIAADYLLDEA--NNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEY 310 (394)
Q Consensus 233 lEkrvFYRLISGLHaSIsiHl~~~Yl~d~~--~~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvLRAl~Ka~p~L~~~~f 310 (394)
+|||||||||||||||||||||++|+++++ .|+|+||+++|++|||+|||||+||||+|+||||||+||+|||.+++|
T Consensus 159 ~EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~ 238 (357)
T PF04137_consen 159 LEKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDF 238 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999996554 268999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHHHHHHHHhcCccccccCCCCCCcccCCCCCCCChhHHHHHhhcccccccccccc
Q 016153 311 ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNIRLCSNPSR 375 (394)
Q Consensus 311 ~tG~~~eD~~t~~lv~~Ll~~~~~~~~cp~~FDE~~lF~~~~a~~LKeeFr~~FrNISrIMD~~~ 375 (394)
+||+..+|++|+++|.+||+... +||.+|||+.||+++.+..||+|||+||||||||||||+
T Consensus 239 ~tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~ 300 (357)
T PF04137_consen 239 NTGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVG 300 (357)
T ss_dssp -STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-S
T ss_pred ccCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcc
Confidence 99999999999999999999754 599999999999999999999999999999999999997
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-76 Score=578.53 Aligned_cols=284 Identities=27% Similarity=0.498 Sum_probs=246.7
Q ss_pred ccccc-CccccHHhHHHhhhhhhhHhHHHhhcCCCceeEeecCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCcCCCc
Q 016153 64 SGVVE-DCCCDYETVNQLNEQVLHPSLQELVKTPFFRYFKVKLW-CDCPFWPD-DGMCRLRDCSVCECPETE-FPESFKK 139 (394)
Q Consensus 64 ~G~v~-dc~c~~etId~~N~~~l~p~L~~Lv~tdfFRyfKVNL~-k~CPFW~d-d~~C~~~~C~V~~cde~e-iPe~wr~ 139 (394)
.-+|. .|+.++. |.++|.+ +.|+|-.|+++|||+||++||+ ++||||++ ++||.+++|+|..-+|.+ ||+.|+.
T Consensus 22 ~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~ 99 (425)
T COG5061 22 EIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKD 99 (425)
T ss_pred hheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHh
Confidence 33444 4778888 9999998 6999999999999999999999 79999998 589999999999998877 9999986
Q ss_pred ccccCCCC----CchhhhcCCCccccccccchhhhcCccccCCCCCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhH
Q 016153 140 PFIRGLSS----DDLACQEGKPEAAVDRTLDSQAFRGWTETDNPWTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIW 215 (394)
Q Consensus 140 ~~~~~~~~----~~~~c~~~~~~~~vd~tl~~~~~~~w~~~d~~~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW 215 (394)
. +++..+ -++.|+..+ ..|..+|+.|.....+.+||||+.||||||||+|++|++||
T Consensus 100 k-ls~f~ph~kkldq~c~~sk------------------~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IW 160 (425)
T COG5061 100 K-LSLFKPHSKKLDQFCSESK------------------CPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIW 160 (425)
T ss_pred h-hhhhccchhhhhhcccccc------------------CCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHH
Confidence 3 121111 122333221 11334777776677889999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHhhhhhHHHHHHHHhhhccccccCccCCCHHHHHHHhhccccchhhHHHHHHHHH
Q 016153 216 DAIYSENCPTYPSKQLCQEERILYKLISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVL 295 (394)
Q Consensus 216 ~aIY~ENCF~~~~~~~ClEkrvFYRLISGLHaSIsiHl~~~Yl~d~~~~~W~pNl~~F~~Rv~~~PeRL~NLYF~YllvL 295 (394)
+.||+.|||.....+.-+|||+||||||||||||+||+|.+|+ +..+|+|+|||++|++|||++||||.|+||+|++|.
T Consensus 161 r~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yl-n~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~ 239 (425)
T COG5061 161 RKIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYL-NVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVR 239 (425)
T ss_pred HHHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999998766667799999999999999999999999998 567899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCccccHHHHHHHHHHhcCccccccCCCCCCcccCCCCCCCChhHHHHHhhcccccccccccc
Q 016153 296 RAVTKAAEYLEQAEYETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNIRLCSNPSR 375 (394)
Q Consensus 296 RAl~Ka~p~L~~~~f~tG~~~eD~~t~~lv~~Ll~~~~~~~~cp~~FDE~~lF~~~~a~~LKeeFr~~FrNISrIMD~~~ 375 (394)
+||.|+.++|...+||..+.. +++..+.+|++.+. +-|..|||.++|+++.+..||++||+|||||||||||||
T Consensus 240 ~al~kI~~~l~sftFC~~~~~---e~~~k~~~lis~i~---~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVg 313 (425)
T COG5061 240 SALGKIDVDLSSFTFCPTDKD---ELSGKLSSLISAIR---AQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVG 313 (425)
T ss_pred HHHHhhccCCcccccCCccHH---HHHhHHHHHHHHHH---hccccccceecccCccchhhhHHHHHHHHhHHHHHHhcC
Confidence 999999999999999975433 89999999998643 568899999999999999999999999999999999997
No 4
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=54.96 E-value=0.81 Score=37.88 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=4.3
Q ss_pred CCCCchHHHHHHHHHHH
Q 016153 14 SYKTRWSLLVGALIAIL 30 (394)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (394)
..+++|.|+++.|++|+
T Consensus 62 rkKrrwlwLlikl~lV~ 78 (81)
T PF14812_consen 62 RKKRRWLWLLIKLFLVF 78 (81)
T ss_dssp ---------TTTTHCCH
T ss_pred cccchhHHHHHHHHHHh
Confidence 34455888766555443
No 5
>PF15240 Pro-rich: Proline-rich
Probab=43.74 E-value=16 Score=34.57 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 016153 22 LVGALIAILIAVALAYALK 40 (394)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (394)
||++|.|+|||+ |||.+
T Consensus 2 LlVLLSvALLAL--SSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLAL--SSAQS 18 (179)
T ss_pred hhHHHHHHHHHh--hhccc
Confidence 566677777765 56554
No 6
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=41.89 E-value=10 Score=33.32 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCC
Q 016153 197 QLNPERYTGYTGP 209 (394)
Q Consensus 197 l~NPERyTGY~G~ 209 (394)
++||||||-|+=.
T Consensus 58 v~nP~KwTkYSL~ 70 (115)
T PF15264_consen 58 VRNPEKWTKYSLD 70 (115)
T ss_pred cCCcccceeeecC
Confidence 4999999999853
No 7
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=35.26 E-value=36 Score=30.55 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=18.4
Q ss_pred HhhhcCCCCCCc-hHHHHHHHHHHHHHHHHhh
Q 016153 7 EKKKKGTSYKTR-WSLLVGALIAILIAVALAY 37 (394)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 37 (394)
||.-.+++.++| |.|.++++|..+++.|..|
T Consensus 5 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s 36 (128)
T PRK13717 5 QKTTDVTAPRRSHWWWTVPGCLAMVLLNAAVS 36 (128)
T ss_pred ccCCcccccchhcchHHHHHHHHHHHHHHHHH
Confidence 333444454444 8888887776666655444
No 8
>PF13024 DUF3884: Protein of unknown function (DUF3884)
Probab=34.73 E-value=15 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.0
Q ss_pred CChhHHHHHhhccccccccccccccccccccceeeEee
Q 016153 353 GPELKQKIQGQFRNIRLCSNPSRLIVDLSYNVDFFFFQ 390 (394)
Q Consensus 353 a~~LKeeFr~~FrNISrIMD~~~~~~~~~~~~~~~~~~ 390 (394)
+..=+++|+..|-|+|.|=.--+.++ ++.+||+.||
T Consensus 42 S~~~~eeFq~~Fl~~t~L~~~~~~~~--~f~~d~~Pfs 77 (77)
T PF13024_consen 42 SDLSLEEFQKKFLNITKLKEEEVDII--SFTVDYLPFS 77 (77)
T ss_pred ccccHHHHHHHHHHhcCCCHHHheee--eecccccccC
Confidence 35567999999999999876666554 5678888876
No 9
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.35 E-value=20 Score=29.04 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.3
Q ss_pred CCCCCChhHHHHHhhcccccc
Q 016153 349 KGQRGPELKQKIQGQFRNIRL 369 (394)
Q Consensus 349 ~~~~a~~LKeeFr~~FrNISr 369 (394)
+|.+-.++|++|+..|.+||.
T Consensus 11 ~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 11 EGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred CCCCHHHHHHHHHHHHCCCCH
Confidence 466778899999999999985
No 10
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=30.43 E-value=59 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016153 20 SLLVGALIAILIAVALA 36 (394)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (394)
.|+++++||+++|+.++
T Consensus 5 aWilG~~lA~~~~v~~a 21 (30)
T TIGR02106 5 AWILGTLLACAFGVLNA 21 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58888888888888664
No 11
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=29.16 E-value=56 Score=24.69 Aligned_cols=19 Identities=37% Similarity=0.537 Sum_probs=9.9
Q ss_pred chHHHHH-HHHHHHHHHHHh
Q 016153 18 RWSLLVG-ALIAILIAVALA 36 (394)
Q Consensus 18 ~~~~~~~-~~~~~~~~~~~~ 36 (394)
.|.|+++ +|++++++++++
T Consensus 15 ~~~~lvlaaLvav~v~l~~s 34 (53)
T PF12555_consen 15 ALALLVLAALVAVAVALLIS 34 (53)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 4555444 555555555443
No 12
>PHA02450 hypothetical protein
Probab=27.47 E-value=16 Score=27.54 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHhhc
Q 016153 197 QLNPERYTGYTGPSARRIWDAIYSEN 222 (394)
Q Consensus 197 l~NPERyTGY~G~~A~rIW~aIY~EN 222 (394)
..|||.||-|.|. -+--.||.=|
T Consensus 4 ~in~egf~ryggd---c~cg~iyty~ 26 (53)
T PHA02450 4 EINPEGFTRYGGD---CTCGPIYTYG 26 (53)
T ss_pred ccCcccceeeCCc---ccccceeeeC
Confidence 3699999999998 4777787654
No 13
>PRK02710 plastocyanin; Provisional
Probab=26.68 E-value=60 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHHHHHHhh
Q 016153 17 TRWSLLVGALIAILIAVALAY 37 (394)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (394)
+||+.+.+++|+++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (119)
T PRK02710 3 KRLRSIAAALVAVVSSFGLGV 23 (119)
T ss_pred hhHHHHHHHHHHHHHHHHhcc
Confidence 588888888877777776544
No 14
>PRK13673 hypothetical protein; Provisional
Probab=24.90 E-value=65 Score=28.53 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=18.1
Q ss_pred HhhhcCCCCCCchHHHHH-HHHHHHHHHHH
Q 016153 7 EKKKKGTSYKTRWSLLVG-ALIAILIAVAL 35 (394)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 35 (394)
-|+||++++++-|...+. ++++++++...
T Consensus 82 ~r~kk~k~~~~~~~~~ii~lvlti~lG~~L 111 (118)
T PRK13673 82 AKRKKGKPTGGFWWIFIIVLVLTILLGLIL 111 (118)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 356667788888655444 55555566544
No 15
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=24.86 E-value=95 Score=22.30 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=19.8
Q ss_pred HHHHHh-hccccchhhHHHHHHHHHHHHHH
Q 016153 272 LMYDRV-LRYPDRVRNLYFTFLFVLRAVTK 300 (394)
Q Consensus 272 ~F~~Rv-~~~PeRL~NLYF~YllvLRAl~K 300 (394)
-|.+|. .+--.+|+|+-|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355553 33456899999999987776653
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.83 E-value=50 Score=28.83 Aligned_cols=6 Identities=50% Similarity=1.331 Sum_probs=3.0
Q ss_pred chHHHH
Q 016153 18 RWSLLV 23 (394)
Q Consensus 18 ~~~~~~ 23 (394)
||+.++
T Consensus 1 RW~l~~ 6 (130)
T PF12273_consen 1 RWVLFA 6 (130)
T ss_pred CeeeHH
Confidence 575433
No 17
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.39 E-value=89 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016153 20 SLLVGALIAILIAVALA 36 (394)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (394)
.|+++++||+.+|+-++
T Consensus 5 aWilG~~lA~~~~i~~a 21 (28)
T PF08173_consen 5 AWILGVLLACAFGILNA 21 (28)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888888888887654
No 18
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=67 Score=29.59 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=27.2
Q ss_pred hhhHhHHHhhc--CCCceeEeecCCCCCCCCCCC
Q 016153 84 VLHPSLQELVK--TPFFRYFKVKLWCDCPFWPDD 115 (394)
Q Consensus 84 ~l~p~L~~Lv~--tdfFRyfKVNL~k~CPFW~dd 115 (394)
.|.|+|++|+. ..=|++||||-+..=.+|.+-
T Consensus 78 ~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y 111 (150)
T KOG0910|consen 78 MLGPILEELVSEYAGKFKLYKVDTDEHPELAEDY 111 (150)
T ss_pred HhhHHHHHHHHhhcCeEEEEEEccccccchHhhc
Confidence 47999999995 799999999999887777653
Done!