BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016154
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300
Y +++W+IVT TTVGYGD+ V ++ + MLF I I +TN
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITN 94
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG+GD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++++S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYG+ K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVGYG+ K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++++S+VTLTTVGYGD K+F +LY+ IGL
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNL 301
+++W++VT TTVGYGD+ KV + ML I +IG ++N+
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNL 301
+++W++VT TTVGYGD+ KV + ML I +IG ++N+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG GD K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ KVF +LY+ IGL
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS++T TTVGYGDL+ V + ++ M+ I
Sbjct: 41 YPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ I
Sbjct: 69 YPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGI 107
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG G+ K+F +LY+ IGL
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ I
Sbjct: 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 41 YPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ I
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 79
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 41 YPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 197 FITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYW 256
F ++ ++ L + CF+F AA + E+ W + S Y+
Sbjct: 164 FSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDW---------------NFLESFYF 208
Query: 257 SIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303
++L+T+G GD GE L+ IG+T Y++ + ++V
Sbjct: 209 CFISLSTIGLGDY---VPGEGYNQKFRELYKIGITCYLLLGLIAMLV 252
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLT-AYIIGNMTNLIVHSAVR 308
+T +++++ L+T GYG ++ G K F ++Y + I T ++ + + VH R
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRR 153
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 41 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFM 312
+++W++VTL+T GYGD + +V M+ IG+ G + R F+
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFV 224
Query: 313 RN 314
RN
Sbjct: 225 RN 226
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T+Y
Sbjct: 85 YPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSY 126
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V ++ ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL V ++ ++ M+ I
Sbjct: 41 YPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 79
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 41 YPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 248 LGYTYSIYWSIVTLTTVGYGDLHAVN-TGEKV 278
+ Y +I+WS+ T TTVGYGD + V G KV
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVH 304
+T S+YW+ VT+ TVGYGD F + ++ IG A + + +++
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 418
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T T VGYGDL+ V ++ ++ M+ I
Sbjct: 62 YPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 418
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYML---FNIGLTAYIIGNMTNLIVH 304
+ +W++V++TTVGYGD+ G K+ L + I L +I + N H
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNI 288
Y +++WS+ T TTVGYGDL+ V + ++ M+ I
Sbjct: 62 YPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 40 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 81
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL+ V + ++ M+ G+T++
Sbjct: 42 YPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSF 83
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308
G+ + ++S+ TL TVGYGD+H L + + A G + +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155
Query: 309 TLFMRNAI 316
+F R+AI
Sbjct: 156 IMFARHAI 163
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308
G+ + ++S+ TL TVGYGD+H L + + A G + +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155
Query: 309 TLFMRNAI 316
+F R+AI
Sbjct: 156 IMFARHAI 163
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGETPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVN 273
Y +++WS+ T TTVGYGDL+ V
Sbjct: 62 YPRALWWSVETATTVGYGDLYPVT 85
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGNTPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 46 WTVSLYWTFVTIATVGYGD 64
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290
++Y+S+VTLTTVG + G K+F +LY+ IGL
Sbjct: 36 ALYFSVVTLTTVGDTPPPQTDFG-KIFTILYIFIGIGL 72
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++WS+ T TTVGYGDL V ++ ++ M+ G+T++
Sbjct: 40 YPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSF 81
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 36 WTVSLYWTFVTIATVGYGD 54
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIG 289
+T S+YW+ VT+ TVGYGD F ++ IG
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIG 68
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 29 WTVSLYWTFVTIATVGYGD 47
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ TVGYGD
Sbjct: 29 WTVSLYWTFVTIATVGYGD 47
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 249 GYTYSIYWSIVTLTTVGYGDLH 270
G+ + ++S+ TL TVGYGD+H
Sbjct: 78 GFGGAFFFSVETLATVGYGDMH 99
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT 309
+ IYW+I +TT+G+GD+ T E + Y+ +I + +I ++I+ +
Sbjct: 52 FMAGIYWTITVMTTLGFGDI----TFES--DAGYLFASIVTVSGVI--FLDIILPFGFVS 103
Query: 310 LFMRNAINEILRYGSKNRLPEGLREQML 337
+F+ I LRY LP+ R +L
Sbjct: 104 MFLAPWIERRLRYHPTIELPDDTRGHIL 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 326 NRLPEGLREQMLAHMQLRFKTAE-LQQEEVLEDLPKAIRSSISQHL 370
+RLP+ L ++ML Q + + E+L+D P +R+ I+ HL
Sbjct: 28 HRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHL 73
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 250 YTYSIYWSIVTLTTVGYGD 268
+T S+YW+ VT+ VGYGD
Sbjct: 29 WTVSLYWTFVTIAAVGYGD 47
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 250 YTYSIYWSIVTLTTVGYGDL 269
+ IYW+I +TT+G+GD+
Sbjct: 52 FMAGIYWTITVMTTLGFGDI 71
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAY 293
Y +++W+ T TTV YGDL+ V ++ ++ M+ G+T++
Sbjct: 62 YPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 253 SIYWSIVTLTTVGYGD 268
+IY+ IVTLTTVG+GD
Sbjct: 228 AIYFVIVTLTTVGFGD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,563,543
Number of Sequences: 62578
Number of extensions: 398426
Number of successful extensions: 1203
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 69
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)