Query 016154
Match_columns 394
No_of_seqs 189 out of 2022
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7.3E-69 1.6E-73 527.5 34.7 352 42-394 59-440 (727)
2 PLN03192 Voltage-dependent pot 100.0 5.1E-65 1.1E-69 529.7 40.6 372 21-393 21-394 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 1.1E-56 2.4E-61 415.9 19.8 363 21-394 182-569 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 5.9E-55 1.3E-59 399.5 27.2 315 69-394 5-328 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 8.4E-47 1.8E-51 351.1 21.7 326 50-394 217-548 (815)
6 KOG3713 Voltage-gated K+ chann 99.9 3.2E-26 6.9E-31 212.7 14.1 249 42-320 172-448 (477)
7 KOG1419 Voltage-gated K+ chann 99.9 4.6E-21 9.9E-26 178.8 12.0 274 44-341 77-354 (654)
8 KOG1545 Voltage-gated shaker-l 99.8 1.2E-21 2.6E-26 173.8 -0.9 190 89-308 252-452 (507)
9 PF00520 Ion_trans: Ion transp 99.6 5.6E-16 1.2E-20 134.8 9.6 192 94-298 1-200 (200)
10 KOG4390 Voltage-gated A-type K 99.6 9.5E-19 2.1E-23 156.9 -9.5 185 90-308 227-415 (632)
11 KOG1420 Ca2+-activated K+ chan 99.5 1.8E-15 3.8E-20 142.2 1.5 292 50-383 116-418 (1103)
12 PF07885 Ion_trans_2: Ion chan 99.4 8.1E-12 1.8E-16 91.5 10.4 77 208-303 2-78 (79)
13 KOG3684 Ca2+-activated K+ chan 98.9 4.3E-08 9.4E-13 91.1 15.2 119 205-344 256-374 (489)
14 PRK10537 voltage-gated potassi 98.9 3.8E-08 8.2E-13 93.8 14.6 55 248-302 167-221 (393)
15 KOG2302 T-type voltage-gated C 98.9 4.2E-08 9.2E-13 98.2 14.0 172 42-224 1096-1279(1956)
16 PF08412 Ion_trans_N: Ion tran 98.7 2E-08 4.3E-13 71.4 4.3 46 43-88 29-74 (77)
17 PF01007 IRK: Inward rectifier 98.2 8.8E-06 1.9E-10 75.8 10.8 98 202-306 39-143 (336)
18 KOG1418 Tandem pore domain K+ 97.9 2.2E-05 4.8E-10 76.6 7.0 58 249-306 115-172 (433)
19 KOG4404 Tandem pore domain K+ 97.8 8.5E-05 1.8E-09 66.7 8.6 60 249-308 186-253 (350)
20 PLN03223 Polycystin cation cha 97.7 0.012 2.6E-07 62.6 22.7 183 169-378 1300-1516(1634)
21 KOG3193 K+ channel subunit [In 97.6 0.0001 2.3E-09 70.3 6.4 166 92-290 92-258 (1087)
22 KOG2301 Voltage-gated Ca2+ cha 97.4 0.0033 7.1E-08 69.3 14.5 111 91-224 474-584 (1592)
23 KOG2302 T-type voltage-gated C 97.3 0.012 2.5E-07 60.6 16.7 142 62-223 80-227 (1956)
24 KOG3827 Inward rectifier K+ ch 97.3 0.0023 5E-08 59.1 10.3 99 201-306 66-171 (400)
25 KOG2301 Voltage-gated Ca2+ cha 97.2 0.0037 7.9E-08 69.0 12.8 73 63-152 1159-1234(1592)
26 KOG4404 Tandem pore domain K+ 97.2 0.00014 3.1E-09 65.2 1.6 57 244-300 75-131 (350)
27 COG4709 Predicted membrane pro 95.6 0.063 1.4E-06 44.8 7.5 76 313-390 4-84 (195)
28 KOG1418 Tandem pore domain K+ 95.5 0.0034 7.4E-08 61.1 -0.2 48 248-295 241-296 (433)
29 PF00520 Ion_trans: Ion transp 95.0 0.34 7.5E-06 41.2 11.0 127 169-295 61-192 (200)
30 PF08016 PKD_channel: Polycyst 94.0 5.9 0.00013 38.7 18.2 52 169-222 305-356 (425)
31 TIGR00870 trp transient-recept 92.9 14 0.00031 38.9 20.9 25 200-224 507-531 (743)
32 PF08006 DUF1700: Protein of u 92.6 0.61 1.3E-05 39.7 7.8 61 313-375 4-69 (181)
33 KOG3676 Ca2+-permeable cation 91.7 10 0.00022 39.2 15.9 133 198-336 540-681 (782)
34 PF00060 Lig_chan: Ligand-gate 90.1 0.41 9E-06 38.9 4.0 61 245-306 40-100 (148)
35 KOG3614 Ca2+/Mg2+-permeable ca 89.4 38 0.00082 37.4 19.1 88 56-152 789-876 (1381)
36 PLN03192 Voltage-dependent pot 85.8 54 0.0012 35.1 19.9 37 356-392 327-367 (823)
37 PLN03223 Polycystin cation cha 85.5 20 0.00043 39.7 13.6 19 132-150 1208-1226(1634)
38 KOG3609 Receptor-activated Ca2 85.5 13 0.00028 38.7 11.9 70 196-269 499-573 (822)
39 PF14377 DUF4414: Domain of un 77.5 6.3 0.00014 30.3 5.2 44 326-369 51-105 (108)
40 KOG4440 NMDA selective glutama 76.9 8.4 0.00018 38.6 6.9 93 207-303 575-667 (993)
41 KOG3599 Ca2+-modulated nonsele 73.8 1.3E+02 0.0028 32.1 22.8 24 89-112 497-520 (798)
42 PF13314 DUF4083: Domain of un 67.7 33 0.00072 22.8 6.2 16 310-325 42-57 (58)
43 KOG0498 K+-channel ERG and rel 63.5 2E+02 0.0043 30.3 20.1 38 356-393 371-413 (727)
44 KOG1054 Glutamate-gated AMPA-t 62.8 12 0.00027 37.2 4.7 54 249-303 595-648 (897)
45 PF10011 DUF2254: Predicted me 60.1 63 0.0014 30.9 9.1 81 245-325 96-176 (371)
46 KOG3300 NADH:ubiquinone oxidor 58.1 63 0.0014 25.5 6.9 48 313-360 59-106 (146)
47 KOG3713 Voltage-gated K+ chann 56.7 1.5E+02 0.0033 29.1 10.8 26 89-114 272-297 (477)
48 PF08566 Pam17: Mitochondrial 53.1 81 0.0018 26.4 7.3 60 273-332 72-134 (173)
49 PF02037 SAP: SAP domain; Int 52.6 37 0.00081 20.0 4.0 26 315-340 5-35 (35)
50 PF14377 DUF4414: Domain of un 51.3 47 0.001 25.5 5.4 50 326-375 7-70 (108)
51 KOG1052 Glutamate-gated kainat 49.9 83 0.0018 32.7 8.7 56 250-306 382-437 (656)
52 KOG1053 Glutamate-gated NMDA-t 49.5 3.7E+02 0.0079 29.0 13.0 34 270-303 630-663 (1258)
53 COG5559 Uncharacterized conser 48.6 26 0.00056 23.3 3.0 24 324-347 7-30 (65)
54 smart00511 ORANGE Orange domai 42.9 82 0.0018 19.6 5.5 37 309-345 4-41 (45)
55 PRK07668 hypothetical protein; 42.8 1.1E+02 0.0024 27.6 7.1 59 310-368 4-65 (254)
56 PHA03239 envelope glycoprotein 42.6 2.9E+02 0.0064 26.9 10.3 56 265-320 319-375 (429)
57 TIGR00933 2a38 potassium uptak 42.0 67 0.0014 31.0 6.2 116 204-340 200-328 (390)
58 PF07077 DUF1345: Protein of u 41.5 2.2E+02 0.0048 24.1 10.6 52 245-296 128-179 (180)
59 PRK09108 type III secretion sy 41.0 3.3E+02 0.007 26.0 12.3 67 274-340 177-243 (353)
60 PRK08156 type III secretion sy 40.0 3.4E+02 0.0074 25.9 11.1 64 278-341 174-237 (361)
61 PF07527 Hairy_orange: Hairy O 37.4 1E+02 0.0022 19.0 5.6 36 309-344 4-40 (43)
62 PRK05702 flhB flagellar biosyn 36.7 3.8E+02 0.0083 25.5 11.1 67 275-341 183-249 (359)
63 PRK12721 secretion system appa 35.9 3.9E+02 0.0084 25.4 11.0 68 275-342 176-243 (349)
64 TIGR00328 flhB flagellar biosy 35.4 4E+02 0.0086 25.3 11.1 67 275-341 176-242 (347)
65 PF08285 DPM3: Dolichol-phosph 34.9 1.9E+02 0.0041 21.5 8.4 27 303-329 64-90 (91)
66 KOG3473 RNA polymerase II tran 33.8 32 0.00069 25.7 1.9 48 323-370 60-107 (112)
67 COG4325 Predicted membrane pro 32.7 4.2E+02 0.0091 25.5 9.3 81 240-322 123-208 (464)
68 PF10047 DUF2281: Protein of u 32.6 41 0.00089 23.2 2.2 22 326-347 10-31 (66)
69 COG1422 Predicted membrane pro 31.9 2E+02 0.0043 24.8 6.5 22 307-328 72-93 (201)
70 PF11151 DUF2929: Protein of u 30.4 58 0.0013 21.8 2.6 18 249-266 2-19 (57)
71 smart00513 SAP Putative DNA-bi 30.2 90 0.002 18.2 3.2 24 316-339 6-34 (35)
72 PRK12468 flhB flagellar biosyn 29.8 5.2E+02 0.011 25.0 11.1 65 279-343 187-251 (386)
73 TIGR00934 2a38euk potassium up 29.8 3.9E+02 0.0085 28.4 9.5 91 199-298 449-546 (800)
74 PRK13109 flhB flagellar biosyn 29.1 5.1E+02 0.011 24.7 12.5 66 276-341 186-251 (358)
75 PF06971 Put_DNA-bind_N: Putat 28.0 1.2E+02 0.0027 19.6 3.7 41 326-366 1-49 (50)
76 TIGR01404 FlhB_rel_III type II 25.3 5.9E+02 0.013 24.1 12.4 68 275-342 175-242 (342)
77 PF06057 VirJ: Bacterial virul 24.5 1.4E+02 0.0031 25.6 4.5 47 322-368 40-99 (192)
78 PF08475 Baculo_VP91_N: Viral 24.3 1.3E+02 0.0028 25.6 4.1 24 304-327 20-43 (183)
79 PF14841 FliG_M: FliG middle d 24.2 83 0.0018 22.5 2.7 34 351-392 29-62 (79)
80 PF07146 DUF1389: Protein of u 24.0 5.2E+02 0.011 24.2 8.4 51 324-374 35-104 (314)
81 PRK06298 type III secretion sy 23.8 6.4E+02 0.014 24.0 12.4 62 282-343 184-245 (356)
82 COG3817 Predicted membrane pro 23.7 2.4E+02 0.0053 25.3 5.8 31 242-273 25-55 (313)
83 PRK12772 bifunctional flagella 23.4 8.4E+02 0.018 25.2 12.1 66 278-343 442-507 (609)
84 PF11119 DUF2633: Protein of u 22.1 1.9E+02 0.0042 19.4 3.8 29 280-308 11-40 (59)
85 COG1615 Uncharacterized conser 21.4 85 0.0018 32.5 3.0 36 260-295 221-256 (885)
86 PF02386 TrkH: Cation transpor 21.3 3.8E+02 0.0082 25.3 7.4 40 250-289 295-340 (354)
87 PF13623 SurA_N_2: SurA N-term 21.0 4.6E+02 0.0099 21.3 7.4 44 281-324 10-66 (145)
88 KOG0500 Cyclic nucleotide-gate 21.0 8.4E+02 0.018 24.3 15.3 48 171-223 98-145 (536)
89 PF09153 DUF1938: Domain of un 20.9 1E+02 0.0022 22.3 2.5 48 311-358 36-85 (86)
90 COG5101 CRM1 Importin beta-rel 20.9 1.7E+02 0.0037 30.0 4.8 45 241-289 490-534 (1053)
91 KOG0510 Ankyrin repeat protein 20.6 1.1E+03 0.023 25.4 12.0 25 199-223 660-684 (929)
92 cd07313 terB_like_2 tellurium 20.5 3.6E+02 0.0078 19.9 7.5 59 313-372 18-81 (104)
93 TIGR00870 trp transient-recept 20.5 1E+03 0.022 25.1 20.8 14 132-145 416-429 (743)
94 PF10281 Ish1: Putative stress 20.0 1.6E+02 0.0034 17.6 2.9 15 317-331 7-21 (38)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-69 Score=527.50 Aligned_cols=352 Identities=40% Similarity=0.690 Sum_probs=320.9
Q ss_pred ccccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccC----------cccchHHHHHHHHHHHHHHHHhhc
Q 016154 42 DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKA----------ATGSLLIVDLVVDFFFAADIIFTF 111 (394)
Q Consensus 42 ~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~if~~Di~l~f 111 (394)
+++..+...++++|+|++++.||.+++++++|++++.|+.++|... ....+.+++.++|++|++||+++|
T Consensus 59 ~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~F 138 (727)
T KOG0498|consen 59 KERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNF 138 (727)
T ss_pred hcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhh
Confidence 4455666778999999999999999999999999999999999866 446788999999999999999999
Q ss_pred ceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcC-----CcCCCcchhhhhhHHHHhHHhHHHHHH
Q 016154 112 FVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTG-----QLHDGRVFGFLNLLRLWRLRRVGELFT 186 (394)
Q Consensus 112 ~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~-----~~~~~~~~~~l~l~rllRl~ri~~~~~ 186 (394)
+|+|.++.+.++|.||++|++||+++ ||++|+++++|++.+...... .........++.+.|++|+.|+.++++
T Consensus 139 rtayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 139 RTAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred eEEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999 999999999999988654331 111114667889999999999999999
Q ss_pred HHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCC-ceeccc-----cCc----ccccchhhhhHH
Q 016154 187 RLEKDIRFTY--FITRLSKLICVTLFAVHSAGCFYFYLAAHHK--IPEN-TWIGSQ-----VND----FKHRSIWLGYTY 252 (394)
Q Consensus 187 ~~~~~~~~~~--~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~--~~~~-~W~~~~-----~~~----~~~~~~~~~Y~~ 252 (394)
++++...+++ ++..+.++++..++.+||.||+||+++..+. +..+ +|+... .++ +...+++.+|.+
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~ 297 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVY 297 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHH
Confidence 9999888776 4555789999999999999999999998776 6666 999852 234 677888999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHH
Q 016154 253 SIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGL 332 (394)
Q Consensus 253 sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l 332 (394)
|+||+++|+||+|||+.+|+|..|++|+|++|++|.++||+++|++.+++++...+.++|+.++.++++||+++++|++|
T Consensus 298 aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~L 377 (727)
T KOG0498|consen 298 ALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDL 377 (727)
T ss_pred HHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHHHhhhhcccCCcCCCHHHHHhhcC
Q 016154 333 REQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK 394 (394)
Q Consensus 333 ~~rv~~y~~~~~~~~-~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~~F~~~~~~~l~~L~~ 394 (394)
|+|+++|++|+|+.+ |.||+++|++||+.||+||+.|+|.+++++||+|+++|+++|.+||+
T Consensus 378 RqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~ 440 (727)
T KOG0498|consen 378 RQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCS 440 (727)
T ss_pred HHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHH
Confidence 999999999999996 99999999999999999999999999999999999999999999984
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.1e-65 Score=529.72 Aligned_cols=372 Identities=52% Similarity=0.930 Sum_probs=342.1
Q ss_pred cccccccccccCCCCCCCCcc-ccccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccCc-ccchHHHHHH
Q 016154 21 GEIKNLASVSSSLLPAFGTVV-DEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA-TGSLLIVDLV 98 (394)
Q Consensus 21 ~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~-~~~~~~~~~~ 98 (394)
+..-+..+.++..+|++|.+. +++..+.++|+|+|+++++++||.+++++++|+++++|++++|.... ...+.++|.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i 100 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNV 100 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHH
Confidence 445666788999999999984 67777889999999999999999999999999999999999996543 3467889999
Q ss_pred HHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhH
Q 016154 99 VDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRL 178 (394)
Q Consensus 99 ~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl 178 (394)
+|++|++|++++|+++|+++++|.+|.||++|+++|+|+ ||++|+++++|++++.....+.......+.+++++|++|+
T Consensus 101 ~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl 179 (823)
T PLN03192 101 VDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRL 179 (823)
T ss_pred HHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999899999999999999999 9999999999999886555443322245678889999999
Q ss_pred HhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHH
Q 016154 179 RRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSI 258 (394)
Q Consensus 179 ~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~ 258 (394)
.|+.+++.++++....++.+.+++++++.+++++||+||+||+++...+..+++|++...+++.+.+++.+|+.|+||++
T Consensus 180 ~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai 259 (823)
T PLN03192 180 RRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSI 259 (823)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHH
Confidence 99999999999888888888899999999999999999999999977777788999875568889999999999999999
Q ss_pred HHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016154 259 VTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLA 338 (394)
Q Consensus 259 ~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~ 338 (394)
+|||||||||++|.|..|+++++++|++|++++||++|++++++.+.++++.+|+++++.+++||+++++|+++|+||++
T Consensus 260 ~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~ 339 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILA 339 (823)
T ss_pred HHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccHHHHHhhCCHHHHHHHHHHHHHhhhhcccCCcCCCHHHHHhhc
Q 016154 339 HMQLRFKTAELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMV 393 (394)
Q Consensus 339 y~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~~F~~~~~~~l~~L~ 393 (394)
|+++.|+.++.++++++++||++||.+|..+++.+.++++++|+++|++++.+|+
T Consensus 340 y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~ 394 (823)
T PLN03192 340 YMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLV 394 (823)
T ss_pred HHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHH
Confidence 9999999888899999999999999999999999999999999999999999886
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-56 Score=415.92 Aligned_cols=363 Identities=24% Similarity=0.446 Sum_probs=316.1
Q ss_pred cccccccccccCCCCCCCCccccccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccCc--ccchHHHHHH
Q 016154 21 GEIKNLASVSSSLLPAFGTVVDEGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA--TGSLLIVDLV 98 (394)
Q Consensus 21 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~~~~~ 98 (394)
.......+++.+++|.+ +....|.++.+|.+++.|+.+||++++++.+|+++..||.++|...+ ...+..+|-+
T Consensus 182 S~la~vm~Lg~DilPQY----rQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSi 257 (971)
T KOG0501|consen 182 SNLAEVMQLGSDILPQY----RQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSI 257 (971)
T ss_pred hhHHHHHHhccccchhh----hhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecch
Confidence 34567778999999999 77788899999999999999999999999999999999999998766 4467889999
Q ss_pred HHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhH
Q 016154 99 VDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRL 178 (394)
Q Consensus 99 ~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl 178 (394)
+|++|++||++||+|.|..+. |++|.||+.|+.+|+|+ ||++|+++|+|++++..+.....+-+..+..+++.|++|+
T Consensus 258 VDVIF~vDIvLNFHTTFVGPg-GEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRL 335 (971)
T KOG0501|consen 258 VDVIFFVDIVLNFHTTFVGPG-GEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRL 335 (971)
T ss_pred hhhhhhhhhhhhcceeeecCC-CceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 99999999999999999 9999999999999998776554432344455556666666
Q ss_pred HhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-------CCCCceeccccC--------cc--
Q 016154 179 RRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHK-------IPENTWIGSQVN--------DF-- 241 (394)
Q Consensus 179 ~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~-------~~~~~W~~~~~~--------~~-- 241 (394)
-|+.|-++ +. +.+....++.+++.+.+++||.||+||.+|.++- ...++|+..... +.
T Consensus 336 GRVaRKLD---~Y--lEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~ 410 (971)
T KOG0501|consen 336 GRVARKLD---HY--LEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSN 410 (971)
T ss_pred HHHHHHHH---HH--HHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCC
Confidence 66555544 32 2334467888899999999999999999997432 234688743221 11
Q ss_pred -----cccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 016154 242 -----KHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAI 316 (394)
Q Consensus 242 -----~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~ 316 (394)
.+++.-..|+.|+|++++.|||||+|++.|.|..|++|++++|++|.++||-++|.+..+++++.+++.+|++.+
T Consensus 411 ~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMl 490 (971)
T KOG0501|consen 411 KGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEML 490 (971)
T ss_pred CceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 234455689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHHHhhhhcccCCcCCCHHHHHhhcC
Q 016154 317 NEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQMVK 394 (394)
Q Consensus 317 ~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~-~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~~F~~~~~~~l~~L~~ 394 (394)
+.+++||+-.++|+.|.+||.+|.--.|... |+|.+++|...|..+|.||..|++++.++..|-|+=.|+++|++|.+
T Consensus 491 nnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm 569 (971)
T KOG0501|consen 491 NNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAM 569 (971)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHH
Confidence 9999999999999999999999999999877 99999999999999999999999999999999999999999999863
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-55 Score=399.47 Aligned_cols=315 Identities=26% Similarity=0.445 Sum_probs=288.5
Q ss_pred HHHHHHHHHHhHhhhcccCcc---cchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhcccccccccc
Q 016154 69 VLVVYSAWASPFELAFRKAAT---GSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVA 145 (394)
Q Consensus 69 ~~~~~~~~~~p~~~~f~~~~~---~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dli 145 (394)
+.++|+.++++...+|+.-.. ..|..+|+++|++|++|++++.++||+++ |.+|+|.++.++||+.+..|.+|++
T Consensus 5 ~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq--GllV~~~~Kl~~hY~~s~~f~lD~l 82 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ--GLLVKDTSKLRKHYVHSTQFKLDVL 82 (536)
T ss_pred EehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--CeeehhhHHHHHHHHHhhhhhhhhh
Confidence 457899999999899986653 34678999999999999999999999999 9999999999999999988999999
Q ss_pred ccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016154 146 STLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAH 225 (394)
Q Consensus 146 s~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~ 225 (394)
|++|+++++...+ .....|++|++|+.|+.+.+.+-+......+. .++.+++..+++++||.||++|+++..
T Consensus 83 ~liP~D~l~~~~~-------~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~ 154 (536)
T KOG0500|consen 83 SLIPLDLLLFKDG-------SASLERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKA 154 (536)
T ss_pred hhcchhHHhhcCC-------cchHHHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHh
Confidence 9999999875543 23467799999999999999988888877765 899999999999999999999999998
Q ss_pred cCCCCCceeccccCcccccc-----hhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 226 HKIPENTWIGSQVNDFKHRS-----IWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300 (394)
Q Consensus 226 ~~~~~~~W~~~~~~~~~~~~-----~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~ 300 (394)
.+...++|.+....+....+ ...+|+.|+||+..|+||+| -...|.+..|..|.++=.++|+++||.++|++++
T Consensus 155 ~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGs 233 (536)
T KOG0500|consen 155 IGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGS 233 (536)
T ss_pred cCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhH
Confidence 88889999997544444444 88999999999999999999 4578999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHhhCCHHHHHHHHHHHHHhhhhccc
Q 016154 301 LIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIRSSISQHLFRGTVEKTY 379 (394)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~-~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~ 379 (394)
++.++++.+.+|+++|+.+++||+.+++|+.++.||.+||+|.|.++ ..||+++++.||+.|++||+.+++.+.|+|++
T Consensus 234 mVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 234 MVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988 78999999999999999999999999999999
Q ss_pred CCcCCCHHHHHhhcC
Q 016154 380 LFQGVSVDLIAQMVK 394 (394)
Q Consensus 380 ~F~~~~~~~l~~L~~ 394 (394)
+|++|++++|.+||+
T Consensus 314 iF~~ce~~lL~elVL 328 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVL 328 (536)
T ss_pred HHHhcchhHHHHHHH
Confidence 999999999999973
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-47 Score=351.06 Aligned_cols=326 Identities=21% Similarity=0.409 Sum_probs=298.0
Q ss_pred CeEEcCCC-hhHHHHHHHHHHHHHHHHHHHhHhhhcccCc---ccchHHHHHHHHHHHHHHHHh-hcceeEEeCCCceEe
Q 016154 50 KYVIAPYD-YRYRWWQTFLVVLVVYSAWASPFELAFRKAA---TGSLLIVDLVVDFFFAADIIF-TFFVAYLDKSTYLLV 124 (394)
Q Consensus 50 ~~ii~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~if~~Di~l-~f~t~y~~~~~g~~v 124 (394)
.-.|||+. +++..|-.++.++..+++++||+..+|.... ...|.+.|++||+++++|+++ +-+.-|.-. |.+|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrg--G~~i 294 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRG--GDII 294 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeC--ceEE
Confidence 34699998 8999999999999999999999999998654 446888999999999999965 455556655 9999
Q ss_pred ccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHH
Q 016154 125 DDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKL 204 (394)
Q Consensus 125 ~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~ 204 (394)
.|.+..++||+++..|-+|++|++|+++.+..++.+ .+.|+.|.+++-.++.+++.++......+. +++++.
T Consensus 295 k~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~-------p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~-~RV~rT 366 (815)
T KOG0499|consen 295 KDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN-------PMWRANRMLKYTSFFEFNHHLESIMSKAYI-YRVIRT 366 (815)
T ss_pred EechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc-------hhhhhhhHHHHHHHHHHHHHHHHHhcchhh-hhhHHH
Confidence 999999999999988999999999999999887654 256888888888888888888877665554 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHH
Q 016154 205 ICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYM 284 (394)
Q Consensus 205 ~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~ 284 (394)
+.++++++|+.||++|..+.+++.+.+.|+.+.. ...|+.|+|||+-|++|+| |...|+|..|.+|..+-.
T Consensus 367 ~~YmlyilHinacvYY~~SayqglG~~rWVydg~--------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w 437 (815)
T KOG0499|consen 367 TGYLLYILHINACVYYWASAYQGLGTTRWVYDGE--------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNW 437 (815)
T ss_pred HHHHHHHHhhhHHHHHHHHhhcccccceeEEcCC--------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHH
Confidence 9999999999999999999998999999998632 1359999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHhhCCHHHH
Q 016154 285 LFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA-ELQQEEVLEDLPKAIR 363 (394)
Q Consensus 285 i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~-~~~~~~il~~Lp~~Lr 363 (394)
+.|+++||.++|.|-.++.+...++..|+..|++.-+||++.++|.+.|+||+.+|+|.|.++ ..||.++++.||.+||
T Consensus 438 ~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq 517 (815)
T KOG0499|consen 438 FMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQ 517 (815)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhhe
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCcCCCHHHHHhhcC
Q 016154 364 SSISQHLFRGTVEKTYLFQGVSVDLIAQMVK 394 (394)
Q Consensus 364 ~ei~~~~~~~~l~~~~~F~~~~~~~l~~L~~ 394 (394)
.+++..++..++.|+.+|++|+.+.|+.|+.
T Consensus 518 ~dlAi~V~y~~lSKVqLFq~Cdr~mirDmll 548 (815)
T KOG0499|consen 518 LDLAIDVNYSILSKVQLFQGCDRQMIRDMLL 548 (815)
T ss_pred eeeeEEeehhhhhHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999998863
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.2e-26 Score=212.65 Aligned_cols=249 Identities=18% Similarity=0.208 Sum_probs=181.4
Q ss_pred ccccccCCCeEEcCCC-hhHHHHHHHHHHHHHHHHHHHhHhh--hccc-----------------CcccchHHHHHHHHH
Q 016154 42 DEGHLRLKKYVIAPYD-YRYRWWQTFLVVLVVYSAWASPFEL--AFRK-----------------AATGSLLIVDLVVDF 101 (394)
Q Consensus 42 ~~~~~~~~~~ii~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~--~f~~-----------------~~~~~~~~~~~~~~~ 101 (394)
.+.+++.+..+-+|.| ...++..+.-+++++.+++..-+.. .|.. .....+.++|.+|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 3466777778889995 4677888888777777776655543 1211 123458899999999
Q ss_pred HHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCC---cCC-CcchhhhhhHHHHh
Q 016154 102 FFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQ---LHD-GRVFGFLNLLRLWR 177 (394)
Q Consensus 102 if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~---~~~-~~~~~~l~l~rllR 177 (394)
.|.+|+++||..+ |.+ .+++|++-+++|+++++||++-....... ..+ ......+|++|++|
T Consensus 252 WFT~E~llR~~~~------------P~k--~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lR 317 (477)
T KOG3713|consen 252 WFTFEYLLRFLVA------------PNK--LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLR 317 (477)
T ss_pred HHHHHHHHHHHcC------------chH--HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHH
Confidence 9999999999765 444 89999989999999999999865433211 111 13335667777777
Q ss_pred HHhHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHH
Q 016154 178 LRRVGELFTRLEKDIRFTY----FITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYS 253 (394)
Q Consensus 178 l~ri~~~~~~~~~~~~~~~----~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~s 253 (394)
++|++++-++......+.. ...++..+++++.+-+-++|.+.|+++.. .+++.+.....|
T Consensus 318 I~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~----------------~~~~~FtSIPa~ 381 (477)
T KOG3713|consen 318 ILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD----------------EPDTKFTSIPAG 381 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------------CCCCCCccccch
Confidence 7777776665554443333 33566666677777777888888888742 222336678899
Q ss_pred HHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 016154 254 IYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEIL 320 (394)
Q Consensus 254 ly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~ 320 (394)
+|||++|||||||||+.|.|..+++++..++++|+++.|+++..|.+-+....+..++.++....=+
T Consensus 382 ~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~ 448 (477)
T KOG3713|consen 382 FWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRRE 448 (477)
T ss_pred hheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999998888776666555554444333
No 7
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.6e-21 Score=178.83 Aligned_cols=274 Identities=14% Similarity=0.183 Sum_probs=186.6
Q ss_pred ccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhccc--CcccchHHHHHHHHHHHHHHHHhhcceeEEeCCCc
Q 016154 44 GHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRK--AATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTY 121 (394)
Q Consensus 44 ~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g 121 (394)
.+.+.+.+.-.|.+.....++.+++++++.++++..+...-+. .....++++|++..++|.+|+++|++.+-..-+
T Consensus 77 ~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r-- 154 (654)
T KOG1419|consen 77 IQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR-- 154 (654)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence 3456678889999998888888887776666655444332222 225678999999999999999999997643332
Q ss_pred eEeccHHHHHHHhhccccccccccccccHHHHHHHh-cCCcCCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhHH-HH
Q 016154 122 LLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIF-TGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYF-IT 199 (394)
Q Consensus 122 ~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~-~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~~-~~ 199 (394)
.-.+.-+.+|.+++..++|++.++.-..++..- .++...+..+.-+|++.++|++|+-+....|.-...+... -.
T Consensus 155 ---YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ 231 (654)
T KOG1419|consen 155 ---YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSK 231 (654)
T ss_pred ---cccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHH
Confidence 112233378888888999999766654332221 1333334556678888888888888766655443333221 14
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHH
Q 016154 200 RLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVF 279 (394)
Q Consensus 200 ~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~ 279 (394)
+++.....-+++.-+.+.+.|+.+..... -..++.+..|.+|+||.+.|+||+||||.+|+|+.++++
T Consensus 232 ELiTt~YIGFL~LIfsSflVYLaEKd~~~------------e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~l 299 (654)
T KOG1419|consen 232 ELITTWYIGFLVLIFSSFLVYLAEKDAQG------------EGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLL 299 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc------------ccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHH
Confidence 55555555566666666666666532111 134556778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016154 280 NMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (394)
Q Consensus 280 ~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 341 (394)
+.++.++|+.+||..-|.+++-++-+-+++.+ =++|-+.++.-..|.+-.-.||.
T Consensus 300 aa~fsligiSFFALPAGILGSGfALKVQeq~R-------QKHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 300 AACFSLIGISFFALPAGILGSGFALKVQEQHR-------QKHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHHHhcccccccchhhhhhHHHHH-------HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999887654333211 12344555555666666655543
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-21 Score=173.76 Aligned_cols=190 Identities=19% Similarity=0.307 Sum_probs=138.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCc-------
Q 016154 89 TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQL------- 161 (394)
Q Consensus 89 ~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~------- 161 (394)
.+++++++.+|.+.|.+|+++||... |.+ ..+.|+...++|+++++|+.+-+.......
T Consensus 252 ~dPFFiVEt~CIiWFtfEllvRf~aC------------PsK--~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~g 317 (507)
T KOG1545|consen 252 TDPFFIVETLCIIWFTFELLVRFFAC------------PSK--ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQG 317 (507)
T ss_pred CCchHhHHHHHHHHHhHHHHHHHhcC------------ccH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccc
Confidence 45789999999999999999999876 444 677888889999999999987653321111
Q ss_pred CCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccc
Q 016154 162 HDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTY----FITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQ 237 (394)
Q Consensus 162 ~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~----~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~ 237 (394)
.+.-.+.++|++|++|++|+.++-++......+.. ....+..+++++++-+-+++...|+...
T Consensus 318 qqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa------------- 384 (507)
T KOG1545|consen 318 QQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA------------- 384 (507)
T ss_pred hhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec-------------
Confidence 11134567888888888888777665444333222 2344555555555555555655554431
Q ss_pred cCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 016154 238 VNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308 (394)
Q Consensus 238 ~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 308 (394)
-+.++.+....+|+|||++|||||||||+.|.|..++++..++.+.|++..|..+-.|.+-+..-+.+
T Consensus 385 ---de~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 385 ---DEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred ---CCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 13445566778899999999999999999999999999999999999999999988887666544433
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.65 E-value=5.6e-16 Score=134.77 Aligned_cols=192 Identities=21% Similarity=0.300 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCC-Ccchhhhhh
Q 016154 94 IVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHD-GRVFGFLNL 172 (394)
Q Consensus 94 ~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~-~~~~~~l~l 172 (394)
++|.+++++|.+|+++++++. |.. +++|++++|+++|+++++|.............+ ......+++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~------~~~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFAL------GFK-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------CCG--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHh------ccH-------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478999999999999999977 321 489999988999999999996543222211100 013344455
Q ss_pred HHHHhHHhHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhH
Q 016154 173 LRLWRLRRVGELFTRLEKDI-RFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYT 251 (394)
Q Consensus 173 ~rllRl~ri~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~ 251 (394)
+|++|+.|+.+..+.+.... .......++.+.+..++++.|.+||+++.+.......+..+.....++..+.+.++.|.
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 55555555444444333321 22234467888899999999999999998875433222211111113556677788999
Q ss_pred HHHHHHHHHhhhcccCCCCCC-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q 016154 252 YSIYWSIVTLTTVGYGDLHAV-----NTGEKVFN-MLYMLFNIGLTAYIIGNM 298 (394)
Q Consensus 252 ~sly~a~~t~ttvGygdi~p~-----t~~e~i~~-i~~~i~g~~~~a~~i~~i 298 (394)
.|+||++.++|+.|+||..|. +..+.++. ++..+.+.++++.++|.|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999987 88999999 555556668888888865
No 10
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.63 E-value=9.5e-19 Score=156.88 Aligned_cols=185 Identities=18% Similarity=0.306 Sum_probs=133.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhh
Q 016154 90 GSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGF 169 (394)
Q Consensus 90 ~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~ 169 (394)
..++.+|.+|.++|..|+++++..+ |.+ .+++|+...++|+++++|+++-+....+. ...+.
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aA------------PsR--~rF~RSvMSiIDVvAIlPYYigLv~t~N~----DVSGa 288 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAA------------PSR--YRFLRSVMSIIDVVAILPYYIGLVMTDNE----DVSGA 288 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcC------------chH--HHHHHHHHHHHHHhhhhhhheEEEecCCc----cccce
Confidence 3467789999999999999999877 433 78999988999999999998754333333 34444
Q ss_pred hhhHHHHhHHhHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccc
Q 016154 170 LNLLRLWRLRRVGELFTRLEKDIRFTYFI----TRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRS 245 (394)
Q Consensus 170 l~l~rllRl~ri~~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~ 245 (394)
+-.+|++|++|++++-++.+....+.+.+ -.+.-+++.+...+.++|.++|+.. .-.+.+
T Consensus 289 FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAE----------------Kg~~at 352 (632)
T KOG4390|consen 289 FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAE----------------KGSSAT 352 (632)
T ss_pred eEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----------------cccccc
Confidence 44555555555555555555555544432 2333444444445555666666664 234566
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 016154 246 IWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308 (394)
Q Consensus 246 ~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 308 (394)
.+.....|+|++++||||.||||+.|.|..++++..++.+.|+++.|..+..|.+-+.....+
T Consensus 353 ~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 353 KFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred ccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 677788999999999999999999999999999999999999999999877666555544433
No 11
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-15 Score=142.16 Aligned_cols=292 Identities=19% Similarity=0.239 Sum_probs=183.8
Q ss_pred CeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccCc------ccchHHHHHHHHHHHHHHHHhhcceeEEeCCCceE
Q 016154 50 KYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA------TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLL 123 (394)
Q Consensus 50 ~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~------~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~ 123 (394)
.-+|.-.+-..++.-.+++++.+-..++.-+..++.... ...-..+|+..+++|++-+++||..+
T Consensus 116 gelisgqtltgr~lvvlvfilsigsliiyf~das~~~ve~cq~w~~~~tqqidlafnifflvyffirfiaa--------- 186 (1103)
T KOG1420|consen 116 GELISGQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAA--------- 186 (1103)
T ss_pred cceeecccccceeeehhHHHHhhhceEEEEEcCCChHHHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhc---------
Confidence 335555555555544444444444443333333333211 33456799999999999999999876
Q ss_pred eccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHH
Q 016154 124 VDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSK 203 (394)
Q Consensus 124 v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~ 203 (394)
.|+ ..++-...-++|+..+-|..+..... ..+--+|++|-+|+..+..+++++.-....+. .++++
T Consensus 187 -sdk----lwf~lemys~vdfftippsfvsiyl~-------r~wlglrflralrlmtvpdilqylnilktsss--irl~q 252 (1103)
T KOG1420|consen 187 -SDK----LWFWLEMYSVVDFFTIPPSFVSIYLN-------RSWLGLRFLRALRLMTVPDILQYLNILKTSSS--IRLVQ 252 (1103)
T ss_pred -ccc----eeeeeehhhheeeeecCchheEEEec-------cchHHHHHHHHHHhccHHHHHHHHHHHhccch--hhHHH
Confidence 111 22222225567777777765432221 22233667777777766666665554333322 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHH
Q 016154 204 LICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLY 283 (394)
Q Consensus 204 ~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~ 283 (394)
++-.++-+....|.+.++++ +..+.|-+.. +...-.|.+|.|+.++||+||||||+..+|..+++|.+++
T Consensus 253 lvsifisvwltaag~ihlle----nsgdp~~~f~------n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvff 322 (1103)
T KOG1420|consen 253 LVSIFISVWLTAAGFIHLLE----NSGDPWENFQ------NNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFF 322 (1103)
T ss_pred HHHHHHHHHHhhcceeehhh----cCCChhHhcc------CcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHH
Confidence 65555555444555555554 4455554322 2233469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHhhc--ccc-HHHHHhhC
Q 016154 284 MLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNR-L-PEGLREQMLAHMQLRFKTA--ELQ-QEEVLEDL 358 (394)
Q Consensus 284 ~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~-l-~~~l~~rv~~y~~~~~~~~--~~~-~~~il~~L 358 (394)
++.|..+||--+..|..++.+.++-.-+|+..-.. ++- + ..-..+.|.+|++-.-.++ ..+ |--++...
T Consensus 323 il~glamfasyvpeiielignr~kyggeyk~ehgk------khivvcghityesvshflkdflhedrddvdvevvflhr~ 396 (1103)
T KOG1420|consen 323 ILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK------KHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRI 396 (1103)
T ss_pred HHHHHHHHHhhhHHHHHHHccccccCceeehhcCC------eeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecC
Confidence 99999999999999999998877655555432110 000 0 0112234444444333333 333 55678889
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCcC
Q 016154 359 PKAIRSSISQHLFRGTVEKTYLFQG 383 (394)
Q Consensus 359 p~~Lr~ei~~~~~~~~l~~~~~F~~ 383 (394)
||.|.-| .++++.+.++.+|++
T Consensus 397 ~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 397 SPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred CCCcchH---HHHhhheeeEEEecc
Confidence 9999887 788999999999986
No 12
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.36 E-value=8.1e-12 Score=91.51 Aligned_cols=77 Identities=31% Similarity=0.621 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHH
Q 016154 208 TLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFN 287 (394)
Q Consensus 208 ~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g 287 (394)
++++.+..+++++.... + .....|.+|+||++.|+||+||||+.|.++.+|+++++.+++|
T Consensus 2 ~~~~~l~~~~~~~~~~~----~---------------~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G 62 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISE----G---------------SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIG 62 (79)
T ss_dssp HHHHHHHHHHHHHHHTT----S---------------SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHH----h---------------cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHH
Confidence 34556667777776620 0 1123689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016154 288 IGLTAYIIGNMTNLIV 303 (394)
Q Consensus 288 ~~~~a~~i~~i~~~~~ 303 (394)
+.++++.++.+++.+.
T Consensus 63 ~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 63 IFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 13
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.91 E-value=4.3e-08 Score=91.14 Aligned_cols=119 Identities=10% Similarity=0.194 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHH
Q 016154 205 ICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYM 284 (394)
Q Consensus 205 ~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~ 284 (394)
++..+.+..|+..-|-+.-+...+.+ ......|..|+|....|+.++||||+.|.|..++.++++..
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~-------------~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tG 322 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDS-------------QDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTG 322 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------------hhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhh
Confidence 34445555565555555544332221 11345799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 016154 285 LFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLRF 344 (394)
Q Consensus 285 i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~ 344 (394)
++|.++.|.+++.++.-+. ..+--+.+++||-..++.++.++-..+-++..|
T Consensus 323 ivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 323 IVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMDTQLTKEHKNAAANVLQETW 374 (489)
T ss_pred hhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998865443 333444566666666666665554444444444
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.89 E-value=3.8e-08 Score=93.79 Aligned_cols=55 Identities=29% Similarity=0.547 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLI 302 (394)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~ 302 (394)
..+.+|+||+++|+||+||||+.|.+..+++++++++++|+.++++.++.+..-+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999988876533
No 15
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.86 E-value=4.2e-08 Score=98.20 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=110.0
Q ss_pred ccccccCCCeEEcCCChhH---------HHHHHHHHHHHHHHHHHHhHhhhc-ccCc-ccchHH-HHHHHHHHHHHHHHh
Q 016154 42 DEGHLRLKKYVIAPYDYRY---------RWWQTFLVVLVVYSAWASPFELAF-RKAA-TGSLLI-VDLVVDFFFAADIIF 109 (394)
Q Consensus 42 ~~~~~~~~~~ii~P~s~~~---------~~w~~~~~~~~~~~~~~~p~~~~f-~~~~-~~~~~~-~~~~~~~if~~Di~l 109 (394)
.+.+..|..|++.|.++|| ..+|.+++++++++++.+..+--- +... +..+.. -++++.++|++|+.+
T Consensus 1096 c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~l 1175 (1956)
T KOG2302|consen 1096 CNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTL 1175 (1956)
T ss_pred hhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHH
Confidence 4456667788999999887 467888888999999888766421 1111 223333 358999999999999
Q ss_pred hcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHH
Q 016154 110 TFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLE 189 (394)
Q Consensus 110 ~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~ 189 (394)
+...- |..-.+ ..|+++.|..+|.+..+--.+-..+........+.++.+|.+|++|-.|.+|.+.+..
T Consensus 1176 KVVAL------Gl~fge-----~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~ 1244 (1956)
T KOG2302|consen 1176 KVVAL------GLYFGE-----QAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAP 1244 (1956)
T ss_pred HHHhh------hhccch-----HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcc
Confidence 97643 211111 7899998999997654443322222222221225566667777777777777666666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016154 190 KDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAA 224 (394)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~ 224 (394)
...-+......-++.+..+++++..+-.+|-.++.
T Consensus 1245 glklVveTL~sSLkpIgnIvliccaffiiFgilgv 1279 (1956)
T KOG2302|consen 1245 GLKLVVETLISSLKPIGNIVLICCAFFIIFGILGV 1279 (1956)
T ss_pred cHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677777777776665556655554
No 16
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.70 E-value=2e-08 Score=71.41 Aligned_cols=46 Identities=20% Similarity=0.513 Sum_probs=40.9
Q ss_pred cccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHHhHhhhcccCc
Q 016154 43 EGHLRLKKYVIAPYDYRYRWWQTFLVVLVVYSAWASPFELAFRKAA 88 (394)
Q Consensus 43 ~~~~~~~~~ii~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~ 88 (394)
++..+...|+|||+|++|.+||++++++.+++++++|+.++|..++
T Consensus 29 ~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 29 ERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 4455566899999999999999999999999999999999997664
No 17
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.24 E-value=8.8e-06 Score=75.79 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC-CC----CceeccccCcccccchhhhhHHHHHHHHHHhhhcccCC--CCCCCc
Q 016154 202 SKLICVTLFAVHSAGCFYFYLAAHHKI-PE----NTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGD--LHAVNT 274 (394)
Q Consensus 202 ~~~~~~~l~~~h~~ac~~~~i~~~~~~-~~----~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygd--i~p~t~ 274 (394)
+.+++..++..-++|++||.++....+ .. .+|.. .......+..|+++++.|+||+|||. ++|..+
T Consensus 39 ~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-------Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 39 LLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-------CVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-------SECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-------ceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 334455566666789999998864322 11 11111 11224579999999999999999998 578889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016154 275 GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (394)
Q Consensus 275 ~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (394)
...++..+-+++|.++.|+++|.+-+-++.-.
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999988776544
No 18
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.2e-05 Score=76.57 Aligned_cols=58 Identities=26% Similarity=0.610 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016154 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (394)
.+..|+|++++++||+|||++.|.|..+++++++..++|+-++..+++.++..+....
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999999999998876443
No 19
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.84 E-value=8.5e-05 Score=66.65 Aligned_cols=60 Identities=22% Similarity=0.430 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 016154 249 GYTYSIYWSIVTLTTVGYGDLHAVN--------TGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVR 308 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t--------~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 308 (394)
.|.+|+|++++|+||+|+||..+-- +.-+.++.+++++|+++++-.++.+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5899999999999999999987632 34457788889999999888888776666655544
No 20
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.70 E-value=0.012 Score=62.65 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=87.0
Q ss_pred hhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhh
Q 016154 169 FLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWL 248 (394)
Q Consensus 169 ~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~ 248 (394)
++.++|++|++|+.+-+..+..... .....+..+++.+++++-.+|.+-+++-. .....+.
T Consensus 1300 FLsiLKfLRLLRFNPrL~vLt~TLr--rAapDLa~F~IIF~IVF~AFAqLG~LLFG-----------------t~ve~FS 1360 (1634)
T PLN03223 1300 ILLLGRILKLMDFQPRLGVITRTLW--LAGADLMHFFVIFGMVFVGYAFIGHVIFG-----------------NASVHFS 1360 (1634)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------cCchhhc
Confidence 4455566666655555544433322 22345566665555555555544333321 0112233
Q ss_pred hhHHHHHHHHHHhhhcccCCCC-------CC----CchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 016154 249 GYTYSIYWSIVTLTTVGYGDLH-------AV----NTGEKV-FNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAI 316 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~-------p~----t~~e~i-~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~ 316 (394)
.+..|++-.+..++ ||.. +. ...+.+ |..+++++.+++.-++++.|...+....+...+-...-
T Consensus 1361 Tf~sSL~TLFqMLL----GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e 1436 (1634)
T PLN03223 1361 DMTDSINSLFENLL----GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVH 1436 (1634)
T ss_pred CHHHHHHHHHHHHH----cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccch
Confidence 44555555554443 3332 11 122333 34444445556677777777766664433222222222
Q ss_pred HHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhccc----------cHHHHHhhCCHHHHHHHHHHHHHhh
Q 016154 317 NEILRYG------------SKNRLPEGLREQMLAHMQLRFKTAEL----------QQEEVLEDLPKAIRSSISQHLFRGT 374 (394)
Q Consensus 317 ~~i~~~m------------~~~~l~~~l~~rv~~y~~~~~~~~~~----------~~~~il~~Lp~~Lr~ei~~~~~~~~ 374 (394)
.++-+|| .+..+|++ |+++-++ .|+..+. +.+.++..+.++|-++=...+.++.
T Consensus 1437 ~EIvDfm~~rfrslL~g~~~~~~i~~~---~~~~~lr-~w~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c 1512 (1634)
T PLN03223 1437 TELFPMLRDKWRSMFKGWFYKNHIPEA---RVRRQLR-IWKGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRC 1512 (1634)
T ss_pred hHHHHHHHHHHHHHHhhhcccccCCcH---HHHHHHH-HhcCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 2333333 34667774 3333222 5665521 1334666677666666666666665
Q ss_pred hhcc
Q 016154 375 VEKT 378 (394)
Q Consensus 375 l~~~ 378 (394)
+...
T Consensus 1513 ~~~~ 1516 (1634)
T PLN03223 1513 VIET 1516 (1634)
T ss_pred HHhh
Confidence 5433
No 21
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.0001 Score=70.27 Aligned_cols=166 Identities=17% Similarity=0.293 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhhh
Q 016154 92 LLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLN 171 (394)
Q Consensus 92 ~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~ 171 (394)
+|.+..++..+-.+--++-++.+|-.. +| +-+-+..|+++++..+|+.+-... +.-. ..+.-+.
T Consensus 92 iw~lq~~~a~is~~~ti~~~yl~ysgs----vv--------rllinihfllelitsfpfii~ifi-pslt---ylyvpvf 155 (1087)
T KOG3193|consen 92 IWFLQTMFACISMVYTILVFYLSYSGS----VV--------RLLINIHFLLELITSFPFIISIFI-PSLT---YLYVPVF 155 (1087)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc----hh--------hhhhhHHHHHHHhhcccceeeeec-cccc---eeechhh
Confidence 455666666666666666666665433 22 233333788899999998654322 1110 1111222
Q ss_pred hHHHHhHHhHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhh
Q 016154 172 LLRLWRLRRVGELFTRLEKDIRFTY-FITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGY 250 (394)
Q Consensus 172 l~rllRl~ri~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y 250 (394)
+...+---.+-..++.+......+. +..+-+ +++.-..+|+.+--.+..+.-+ .....--..
T Consensus 156 lncwlakgalqammndl~r~~~~s~sal~~ql------~ll~s~l~clift~~c~i~h~q-----------ra~~k~i~l 218 (1087)
T KOG3193|consen 156 LNCWLAKGALQAMMNDLNRKSFISSSALFRQL------LLLFSVLACLIFTGMCSIEHLQ-----------RARGKRIDL 218 (1087)
T ss_pred hhhhhhhhHHHHhhhhHhHHhhhhHHHHHHHH------HHHHHHHHHHHHhhhhhHHHHH-----------HccCceeee
Confidence 2232222222233343333322222 222222 2222333454443222110000 000011134
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHH
Q 016154 251 TYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGL 290 (394)
Q Consensus 251 ~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~ 290 (394)
..|+|+.++|++||||||..|.-+...+..++++-++.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 6699999999999999999999888877766555444443
No 22
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.38 E-value=0.0033 Score=69.31 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhccccccccccccccHHHHHHHhcCCcCCCcchhhh
Q 016154 91 SLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFL 170 (394)
Q Consensus 91 ~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l 170 (394)
.+.+.+.+...+|.+|+.++...- ++ ..|++++++++|.+.+. +.++... .. .......+
T Consensus 474 ~l~~~~~vF~~lF~~Em~~ki~al-----------~~----~~yF~~~~n~fD~~iv~-l~~~~~~-~~---~~~g~svL 533 (1592)
T KOG2301|consen 474 LLYLGNVVFTGLFTVEMILKIYAL-----------GP----RNYFRRGWNIFDLIIVL-LSLLELL-LK---NVYGLSVL 533 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-----------Cc----HHHHhhhcchheEEEEe-hhhHHhc-cc---chHHHHHH
Confidence 456778888999999999997543 34 78888889999999888 5554433 21 12444555
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016154 171 NLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAA 224 (394)
Q Consensus 171 ~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~ 224 (394)
|.+|++|++|+.+..-.+++ ....+..-.+.++.++++.-++.+++-++|.
T Consensus 534 r~frllRIfkl~k~wp~l~~---lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gm 584 (1592)
T KOG2301|consen 534 RSFRLLRIFKLIKSWPTLND---LVKSIFNSGKALGNLVLFLFIFIFIFAAIGM 584 (1592)
T ss_pred HHHHHHHHHHHHHhhHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55555555555554444333 3222333344444444444444444444443
No 23
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.012 Score=60.56 Aligned_cols=142 Identities=12% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhh-----hcccCcccchHHHHHHHHHHHHHHHHhhcce-eEEeCCCceEeccHHHHHHHhh
Q 016154 62 WWQTFLVVLVVYSAWASPFEL-----AFRKAATGSLLIVDLVVDFFFAADIIFTFFV-AYLDKSTYLLVDDHKKIALRYV 135 (394)
Q Consensus 62 ~w~~~~~~~~~~~~~~~p~~~-----~f~~~~~~~~~~~~~~~~~if~~Di~l~f~t-~y~~~~~g~~v~~~~~i~~~Yl 135 (394)
+++.+.++++++++++.-..- .=.++....+..+|-++-++|++|+++++.. |.+.+ +-|+
T Consensus 80 wfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk-------------kcyl 146 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK-------------KCYL 146 (1956)
T ss_pred HHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccc
Confidence 467777888888887765322 1122334567889999999999999999874 33333 6788
Q ss_pred ccccccccccccccHHHHHHHhcCCcCCCcchhhhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016154 136 TRLWFTMDVASTLPFQFIYRIFTGQLHDGRVFGFLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSA 215 (394)
Q Consensus 136 ~~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ 215 (394)
-..|.-+|+...+.-.+-+.+...+ .. +.-+|.+|++|-++.+++...-+.+....+..+-.+...++++.++
T Consensus 147 gdtwnrldffiv~agm~eysldlqn----vs---lsairtvrvlrplrainrvpsmrilvtllldtlpmlgnvlllcffv 219 (1956)
T KOG2302|consen 147 GDTWNRLDFFIVMAGMVEYSLDLQN----VS---LSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFV 219 (1956)
T ss_pred cCchhhhhhhheehhhhhhcccccc----cc---hhhhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6668889987766654443322222 22 3445556666666666666555544444444444455555544444
Q ss_pred HHHHHHHh
Q 016154 216 GCFYFYLA 223 (394)
Q Consensus 216 ac~~~~i~ 223 (394)
..++-.+|
T Consensus 220 ffifgivg 227 (1956)
T KOG2302|consen 220 FFIFGIVG 227 (1956)
T ss_pred HHHHHHHH
Confidence 44444443
No 24
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0023 Score=59.10 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCC--CC
Q 016154 201 LSKLICVTLFAVHSAGCFYFYLAAHHKIP-----ENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHA--VN 273 (394)
Q Consensus 201 l~~~~~~~l~~~h~~ac~~~~i~~~~~~~-----~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p--~t 273 (394)
++.+...+++-..++|++||.++...++- ..+|.. --........|+-|++-|=||+|||--.+ .=
T Consensus 66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tp-------CV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeC 138 (400)
T KOG3827|consen 66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTP-------CVMNVHSFTSAFLFSIETQTTIGYGFRYVTEEC 138 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCc-------ceeeccchhhhheeeeeeeeeeeccccccCccC
Confidence 34444445555556899999999743321 122221 11223457789999999999999997654 44
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016154 274 TGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (394)
Q Consensus 274 ~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (394)
+...+..++-+++|+++-|+++|.+.+-++...
T Consensus 139 P~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 139 PEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 788888899999999999999999887766543
No 25
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.0037 Score=68.96 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcccCc---ccchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhhcccc
Q 016154 63 WQTFLVVLVVYSAWASPFELAFRKAA---TGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYVTRLW 139 (394)
Q Consensus 63 w~~~~~~~~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl~~~~ 139 (394)
|+..++..++++.+.+-.+ ++... ...+..++.++.++|.+|.+++...- + + ..|++.+|
T Consensus 1159 F~~~i~~li~ln~i~l~~~--~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~------~-----~----~~yf~~~W 1221 (1592)
T KOG2301|consen 1159 FDYLIMLLIFLNTIIMMVE--TYDQSDTYTAILTILNAVFIVLFTIECILKVIAL------R-----F----RGYFTSAW 1221 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h-----h----hHhccccc
Confidence 5556666666665444433 33322 33567788999999999999997532 1 2 78999999
Q ss_pred ccccccccccHHH
Q 016154 140 FTMDVASTLPFQF 152 (394)
Q Consensus 140 f~~Dlis~lP~~~ 152 (394)
+.+|++.++--.+
T Consensus 1222 N~FDfvvvIlSIv 1234 (1592)
T KOG2301|consen 1222 NVFDFVVTILSIV 1234 (1592)
T ss_pred hheEeeeeeHhHH
Confidence 9999988776544
No 26
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00014 Score=65.25 Aligned_cols=57 Identities=26% Similarity=0.484 Sum_probs=48.9
Q ss_pred cchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 244 RSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTN 300 (394)
Q Consensus 244 ~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~ 300 (394)
....-++..|+|||++.+||+|||..+|.|..+++|+++..++|+-+--.++..+++
T Consensus 75 ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 75 AGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred cccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 344457788999999999999999999999999999999999998777776666654
No 27
>COG4709 Predicted membrane protein [Function unknown]
Probab=95.61 E-value=0.063 Score=44.77 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc---cccHHHHHhhC--CHHHHHHHHHHHHHhhhhcccCCcCCCHH
Q 016154 313 RNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHLFRGTVEKTYLFQGVSVD 387 (394)
Q Consensus 313 ~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~---~~~~~~il~~L--p~~Lr~ei~~~~~~~~l~~~~~F~~~~~~ 387 (394)
+|-++++++|+ +++|++.++.+..+|+-.+++. |.+|+++.++| |.++-.|+..+.-.+..+.-|=++|.+..
T Consensus 4 ~efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 35567888888 6899999999999998888766 88899999999 88999999998888888888888877765
Q ss_pred HHH
Q 016154 388 LIA 390 (394)
Q Consensus 388 ~l~ 390 (394)
.+.
T Consensus 82 ii~ 84 (195)
T COG4709 82 IIA 84 (195)
T ss_pred HHH
Confidence 544
No 28
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.0034 Score=61.11 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHhhhcccCCCCCCCchhH--------HHHHHHHHHHHHHHHHHH
Q 016154 248 LGYTYSIYWSIVTLTTVGYGDLHAVNTGEK--------VFNMLYMLFNIGLTAYII 295 (394)
Q Consensus 248 ~~Y~~sly~a~~t~ttvGygdi~p~t~~e~--------i~~i~~~i~g~~~~a~~i 295 (394)
-.|+.|+|++++++||+|+||+.|.+...+ ....+..++|....+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 467889999999999999999999998866 688888888888888877
No 29
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.05 E-value=0.34 Score=41.20 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=64.0
Q ss_pred hhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhh
Q 016154 169 FLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWL 248 (394)
Q Consensus 169 ~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~ 248 (394)
..++.|++|+.|+.++++..+..........+..+.+.....+.+++.+.+..++..--.+...+-.....+..+.....
T Consensus 61 ~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 140 (200)
T PF00520_consen 61 LLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGY 140 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTH
T ss_pred eEEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccc
Confidence 35566666666666666655555555555566666666666666666666666665433333222111111222334445
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCCchh-----HHHHHHHHHHHHHHHHHHH
Q 016154 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGE-----KVFNMLYMLFNIGLTAYII 295 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e-----~i~~i~~~i~g~~~~a~~i 295 (394)
...+++..++.++...--|+--+..... .....++.+...++.++++
T Consensus 141 ~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 192 (200)
T PF00520_consen 141 ENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILL 192 (200)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHH
Confidence 5556666666666655555555544444 3344444444444444433
No 30
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=94.03 E-value=5.9 Score=38.73 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=25.5
Q ss_pred hhhhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 169 FLNLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYL 222 (394)
Q Consensus 169 ~l~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i 222 (394)
++..+|++|++|..+-+..+.+.... ...++....+.++++.--+|++.+.+
T Consensus 305 fl~~lrll~~l~f~~~~~~~~~tl~~--a~~~l~~f~~~~~i~~~~fa~~g~l~ 356 (425)
T PF08016_consen 305 FLLWLRLLKLLRFNRRLSLLSRTLRR--AAKDLLGFFVIFLIIFLAFAQAGYLL 356 (425)
T ss_pred HHHHHHHhhheeecchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555554444433333322 23455666555555555555555544
No 31
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=92.90 E-value=14 Score=38.94 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016154 200 RLSKLICVTLFAVHSAGCFYFYLAA 224 (394)
Q Consensus 200 ~l~~~~~~~l~~~h~~ac~~~~i~~ 224 (394)
.++++++.++++.--+++.++.+..
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888888888777753
No 32
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=92.64 E-value=0.61 Score=39.70 Aligned_cols=61 Identities=30% Similarity=0.425 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc---cccHHHHHhhC--CHHHHHHHHHHHHHhhh
Q 016154 313 RNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA---ELQQEEVLEDL--PKAIRSSISQHLFRGTV 375 (394)
Q Consensus 313 ~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~---~~~~~~il~~L--p~~Lr~ei~~~~~~~~l 375 (394)
+|=+++++.+++ ++|++-++.+.+||+-..+.. |.+|+++.++| |+++-+|+..+..-+.-
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 345677888886 699999999999999988765 77899999998 77888887765543333
No 33
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.69 E-value=10 Score=39.20 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHh--hhcccCCCCCC--C
Q 016154 198 ITRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTL--TTVGYGDLHAV--N 273 (394)
Q Consensus 198 ~~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~--ttvGygdi~p~--t 273 (394)
.-.++++.+..++++-=+|-.+|.+....+.++. ... .+-........| +++.-++.++ .|+|+||.... +
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~--~~~--~~~~~~~m~~~~-ds~~~~~l~lf~ftig~~dl~~~~~~ 614 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSS--PND--KNVESNPMCNPY-DSFSTFLLTLFEFTIGMGDLEACENT 614 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc--ccc--ccccccccCChh-hHHHHHHHHHHHHhhhhhhhhhcccc
Confidence 3567777777777776677777777643222110 000 000001111112 2233333333 78999998643 3
Q ss_pred ---chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH-HHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016154 274 ---TGE-KVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRT-LFMRNAINEILRYGSKNRLPEGLREQM 336 (394)
Q Consensus 274 ---~~e-~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~-~~~~~~~~~i~~~m~~~~l~~~l~~rv 336 (394)
... .++.++++++.++++-++|+.++.-.....+++ ++.+.+-.++- -|-++.+|+.++++-
T Consensus 615 ~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~~~ 681 (782)
T KOG3676|consen 615 DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRKRF 681 (782)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHHHH
Confidence 222 234444444555667777777776666555554 56665555443 466789999988873
No 34
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.08 E-value=0.41 Score=38.92 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=45.7
Q ss_pred chhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016154 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (394)
Q Consensus 245 ~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (394)
........++++++.+++. +-++..|.+...|++..+..++++++.+...|.+.+.+....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445677889888888887 336789999999999999999999999999999999887543
No 35
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.44 E-value=38 Score=37.38 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhHhhhcccCcccchHHHHHHHHHHHHHHHHhhcceeEEeCCCceEeccHHHHHHHhh
Q 016154 56 YDYRYRWWQTFLVVLVVYSAWASPFELAFRKAATGSLLIVDLVVDFFFAADIIFTFFVAYLDKSTYLLVDDHKKIALRYV 135 (394)
Q Consensus 56 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~if~~Di~l~f~t~y~~~~~g~~v~~~~~i~~~Yl 135 (394)
.+|...+|-.++..+.++.++...+.+-|...+.. ..++-++-.+-+++|-+=+...+ +. |. + +++++. |+
T Consensus 789 sAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~-~Ew~~~~~iftl~~E~vRq~~~s---e~-~~-l--~~kv~v-~f 859 (1381)
T KOG3614|consen 789 SAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSM-WEWILFAWIFTLFLEEVRQIFIS---ES-GL-L--PQKVRV-YF 859 (1381)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHheeccCCCCCc-cchhHHHHHHHHHHHHHHHHhcC---CC-cc-h--hhHHHH-HH
Confidence 45677888888888888888887777777766532 22222233334455554443333 32 21 1 334444 55
Q ss_pred ccccccccccccccHHH
Q 016154 136 TRLWFTMDVASTLPFQF 152 (394)
Q Consensus 136 ~~~~f~~Dlis~lP~~~ 152 (394)
...|+..|+++++-|.+
T Consensus 860 ~d~wN~~d~~ai~~F~v 876 (1381)
T KOG3614|consen 860 ADFWNLIDLLAILLFLV 876 (1381)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55599999999877754
No 36
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=85.82 E-value=54 Score=35.15 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=23.0
Q ss_pred hhCCHHHHHHHHHHHHHhhhh----cccCCcCCCHHHHHhh
Q 016154 356 EDLPKAIRSSISQHLFRGTVE----KTYLFQGVSVDLIAQM 392 (394)
Q Consensus 356 ~~Lp~~Lr~ei~~~~~~~~l~----~~~~F~~~~~~~l~~L 392 (394)
+++|+.||++|..+++...=. +-.+++.+|++.-.++
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i 367 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSI 367 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHH
Confidence 468999999998877654322 2234555666555544
No 37
>PLN03223 Polycystin cation channel protein; Provisional
Probab=85.53 E-value=20 Score=39.66 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHhhccccccccccccccH
Q 016154 132 LRYVTRLWFTMDVASTLPF 150 (394)
Q Consensus 132 ~~Yl~~~~f~~Dlis~lP~ 150 (394)
+.|++++|.++|++.++-.
T Consensus 1208 laYFKSfWNwLEIl~IlLS 1226 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIGLH 1226 (1634)
T ss_pred hhHhccchHHHHHHHHHHH
Confidence 6899999999999665443
No 38
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.50 E-value=13 Score=38.69 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCC
Q 016154 196 YFITRLSKLICVTLFAVHSAGCF-----YFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDL 269 (394)
Q Consensus 196 ~~~~~l~~~~~~~l~~~h~~ac~-----~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi 269 (394)
..+..++|+++.+.+++--++|. ||+.+...... .|.... ....-+....=..+++|++-+++.++--++
T Consensus 499 rmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~--~~~~~~--~~~~fsti~eS~~tLFWsiFglv~~~~~~l 573 (822)
T KOG3609|consen 499 RMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI--DQDYTK--TTDSFSTIGESSKTLFWSIFGLVVLGSVVL 573 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc--cccccc--cccccccHHHHHHHHHHHHHhcccccceec
Confidence 34577888887777777777774 44443221111 122211 001122223345689999987766554333
No 39
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=77.45 E-value=6.3 Score=30.32 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc-----------cccHHHHHhhCCHHHHHHHHHH
Q 016154 326 NRLPEGLREQMLAHMQLRFKTA-----------ELQQEEVLEDLPKAIRSSISQH 369 (394)
Q Consensus 326 ~~l~~~l~~rv~~y~~~~~~~~-----------~~~~~~il~~Lp~~Lr~ei~~~ 369 (394)
.-+|++++.-|...+.-.-... ..+.-.++..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 5689999999998876543322 3456789999999999999764
No 40
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=76.92 E-value=8.4 Score=38.59 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHH
Q 016154 207 VTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLF 286 (394)
Q Consensus 207 ~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~ 286 (394)
..++-+|..|...|++....+.+. --+. ..-.+++.....-.|+||+-..+..-|-|.-+|.+-..+++.++..-+
T Consensus 575 lv~~SVhvVal~lYlLDrfSPFgR-Fk~~---ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGF 650 (993)
T KOG4440|consen 575 LVGLSVHVVALMLYLLDRFSPFGR-FKVN---DSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGF 650 (993)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc-eeec---cCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhh
Confidence 345567888988888765322111 0000 011233444567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016154 287 NIGLTAYIIGNMTNLIV 303 (394)
Q Consensus 287 g~~~~a~~i~~i~~~~~ 303 (394)
++++.|--.+++++.+.
T Consensus 651 aMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 651 AMIIVASYTANLAAFLV 667 (993)
T ss_pred heeeehhhhhhhhhhee
Confidence 88888888888887764
No 41
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.78 E-value=1.3e+02 Score=32.06 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcc
Q 016154 89 TGSLLIVDLVVDFFFAADIIFTFF 112 (394)
Q Consensus 89 ~~~~~~~~~~~~~if~~Di~l~f~ 112 (394)
...++++|.++.++.++=++++..
T Consensus 497 ~s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 497 RSKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887777654
No 42
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=67.71 E-value=33 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 016154 310 LFMRNAINEILRYGSK 325 (394)
Q Consensus 310 ~~~~~~~~~i~~~m~~ 325 (394)
...+++++++-+.+.+
T Consensus 42 ~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 42 DSMEQKLDRIIELLEK 57 (58)
T ss_pred hHHHHHHHHHHHHHcc
Confidence 3577888877666543
No 43
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.47 E-value=2e+02 Score=30.25 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=31.0
Q ss_pred hhCCHHHHHHHHHHHHHhhhh-----cccCCcCCCHHHHHhhc
Q 016154 356 EDLPKAIRSSISQHLFRGTVE-----KTYLFQGVSVDLIAQMV 393 (394)
Q Consensus 356 ~~Lp~~Lr~ei~~~~~~~~l~-----~~~~F~~~~~~~l~~L~ 393 (394)
++||+.||+.|--+.+.+... ...+.+++|++.-++++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~ 413 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIK 413 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHH
Confidence 569999999999998888765 34688999998877664
No 44
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=62.79 E-value=12 Score=37.23 Aligned_cols=54 Identities=13% Similarity=0.337 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 249 GYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (394)
....|+||++..+..-| -|+.|.+..+++..-+.-++-+++.+--.+++++.+.
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 45689999999999988 7999999999999999999888888888888887764
No 45
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=60.15 E-value=63 Score=30.93 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=57.3
Q ss_pred chhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Q 016154 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGS 324 (394)
Q Consensus 245 ~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~ 324 (394)
.....|+.++-+++..+.+++-++..........+++++.+++++.+-+.+..++..++-.+--..-.++-.+.+++...
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~~ 175 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLYP 175 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhc
Confidence 34456888898999988888766654444455778888888888999999999988776655555555555555555543
Q ss_pred h
Q 016154 325 K 325 (394)
Q Consensus 325 ~ 325 (394)
.
T Consensus 176 ~ 176 (371)
T PF10011_consen 176 E 176 (371)
T ss_pred C
Confidence 3
No 46
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=58.06 E-value=63 Score=25.50 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccHHHHHhhCCH
Q 016154 313 RNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPK 360 (394)
Q Consensus 313 ~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~il~~Lp~ 360 (394)
+.+..+++.|-.++-+-+-|+..-.+++--.++++-..|.+++++.|.
T Consensus 59 k~rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 59 KRRRLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 344455666666667777777666666666666665667788888774
No 47
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=56.69 E-value=1.5e+02 Score=29.13 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhccee
Q 016154 89 TGSLLIVDLVVDFFFAADIIFTFFVA 114 (394)
Q Consensus 89 ~~~~~~~~~~~~~if~~Di~l~f~t~ 114 (394)
..+++++|++..+=|.+++++....+
T Consensus 272 k~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 272 KSPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999987655
No 48
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=53.11 E-value=81 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hch-hhHHHHHHHHHHHHHHHHhCCCCHHH
Q 016154 273 NTGEKVFNMLYMLFNIGLTAYIIGNM-TNLIV-HSA-VRTLFMRNAINEILRYGSKNRLPEGL 332 (394)
Q Consensus 273 t~~e~i~~i~~~i~g~~~~a~~i~~i-~~~~~-~~~-~~~~~~~~~~~~i~~~m~~~~l~~~l 332 (394)
-..+-++...++.+++...++++|-. ++-+- ..+ +...++..|-.+.-+..+++++++.-
T Consensus 72 ~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps~ 134 (173)
T PF08566_consen 72 MGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPSS 134 (173)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34567777777778888888877743 33222 222 34567778888888888889988743
No 49
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=52.58 E-value=37 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 016154 315 AINEILRYGSKNRLPE-----GLREQMLAHM 340 (394)
Q Consensus 315 ~~~~i~~~m~~~~l~~-----~l~~rv~~y~ 340 (394)
+..++++.++.+++|. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 3567889999999985 6888888764
No 50
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=51.31 E-value=47 Score=25.45 Aligned_cols=50 Identities=30% Similarity=0.385 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHh-h-------c------cccHHHHHhhCCHHHHHHHHHHHHHhhh
Q 016154 326 NRLPEGLREQMLAHMQLRFK-T-------A------ELQQEEVLEDLPKAIRSSISQHLFRGTV 375 (394)
Q Consensus 326 ~~l~~~l~~rv~~y~~~~~~-~-------~------~~~~~~il~~Lp~~Lr~ei~~~~~~~~l 375 (394)
.-+|++++.+|..-+.-.-+ . . ..-..++|+.||+.+|.||..+..+.--
T Consensus 7 aaLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~ 70 (108)
T PF14377_consen 7 AALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERR 70 (108)
T ss_pred HHCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35889999888543322111 0 0 0113589999999999999987776643
No 51
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=49.88 E-value=83 Score=32.68 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016154 250 YTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSA 306 (394)
Q Consensus 250 Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 306 (394)
...++|.++.++..-| ++..|.+...|++..+..+++.++.+.-.|++++.+....
T Consensus 382 ~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~ 437 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPR 437 (656)
T ss_pred cccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3346777778788777 4588999999999999999999999999999999987543
No 52
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=49.53 E-value=3.7e+02 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016154 270 HAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIV 303 (394)
Q Consensus 270 ~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~ 303 (394)
.|+.+..++++.+..++++++.|.-.+++++...
T Consensus 630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999987653
No 53
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=48.62 E-value=26 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=20.8
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhhc
Q 016154 324 SKNRLPEGLREQMLAHMQLRFKTA 347 (394)
Q Consensus 324 ~~~~l~~~l~~rv~~y~~~~~~~~ 347 (394)
-..++|++|++.|.+|.+|..+..
T Consensus 7 lfqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999998766
No 54
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=42.93 E-value=82 Score=19.61 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh
Q 016154 309 TLFMRNAINEILRYGSKN-RLPEGLREQMLAHMQLRFK 345 (394)
Q Consensus 309 ~~~~~~~~~~i~~~m~~~-~l~~~l~~rv~~y~~~~~~ 345 (394)
+.-|.+.+.++.+||... .++++.+.|+.++++-..+
T Consensus 4 ~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 4 RSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 357899999999999864 6789999999998875543
No 55
>PRK07668 hypothetical protein; Validated
Probab=42.77 E-value=1.1e+02 Score=27.58 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHhhc--cccHHHHHhhCCHHHHHHHHH
Q 016154 310 LFMRNAINEILRYGSKNRLPEGLREQ-MLAHMQLRFKTA--ELQQEEVLEDLPKAIRSSISQ 368 (394)
Q Consensus 310 ~~~~~~~~~i~~~m~~~~l~~~l~~r-v~~y~~~~~~~~--~~~~~~il~~Lp~~Lr~ei~~ 368 (394)
++.++=+.+++.|++..++|++-++. +.++.++....+ |.++++++.+=|.+.-+|+..
T Consensus 4 keNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~ 65 (254)
T PRK07668 4 KEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVK 65 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhc
Confidence 45566677888999999999876665 455666665544 999999999944444555443
No 56
>PHA03239 envelope glycoprotein M; Provisional
Probab=42.57 E-value=2.9e+02 Score=26.93 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=30.8
Q ss_pred ccCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 016154 265 GYGDLHAVNT-GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEIL 320 (394)
Q Consensus 265 Gygdi~p~t~-~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~ 320 (394)
+|..+.-..+ ...-..+.+.++.++..+.++-.+.........++.++-.+.++++
T Consensus 319 ~Y~~v~v~a~~l~~~v~~~Laviail~l~~~ivRlvRa~~yHr~~~t~fy~~v~~~~ 375 (429)
T PHA03239 319 LYDEIMIASPKLIQGAAGILAAFAVISIALAILRATRAYKFHKAANSKFLGQVARVA 375 (429)
T ss_pred HhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444442333 5555666666666666666666665555555555566666664443
No 57
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=42.03 E-value=67 Score=30.98 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhccc--CCCCCCCchhHHHHH
Q 016154 204 LICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGY--GDLHAVNTGEKVFNM 281 (394)
Q Consensus 204 ~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGy--gdi~p~t~~e~i~~i 281 (394)
.+...+++.-..+..++..+. ++............+.+.+.++.+|.|+ +|...-++..+++.+
T Consensus 200 ~~~~~~~l~~~~~i~~~l~~~--------------~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~ 265 (390)
T TIGR00933 200 RLFVTFLLLAIGFILFLLLER--------------GNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLL 265 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------cccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHH
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016154 282 LYMLFNIGL-----------TAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHM 340 (394)
Q Consensus 282 ~~~i~g~~~-----------~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~ 340 (394)
+.|++|.+- ++.++..+...+.+......-+..++ ..+.++++....+..+.
T Consensus 266 ~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~~~i-------~~~~v~~~~~~~~~~~~ 328 (390)
T TIGR00933 266 LLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRRI-------GGKTIDKAILISVWSFF 328 (390)
T ss_pred HHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEeEEE-------CCeehHHHHHHHHHHHH
No 58
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=41.53 E-value=2.2e+02 Score=24.13 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=44.6
Q ss_pred chhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016154 245 SIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYIIG 296 (394)
Q Consensus 245 ~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~ 296 (394)
+..-.|.+=+|++++.-+|..-.|..+.+..-|-.+..=.+++.++.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445799999999999999999999999999999998888888888777664
No 59
>PRK09108 type III secretion system protein HrcU; Validated
Probab=41.00 E-value=3.3e+02 Score=25.96 Aligned_cols=67 Identities=7% Similarity=0.084 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016154 274 TGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHM 340 (394)
Q Consensus 274 ~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~ 340 (394)
....+...+..++..+..++++-.+....-+..+..++.+=..+++++=.|+..=+++++.|.++--
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~ 243 (353)
T PRK09108 177 LAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLA 243 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3444555555555555556555555555555555455555556788888888899999998887643
No 60
>PRK08156 type III secretion system protein SpaS; Validated
Probab=39.99 E-value=3.4e+02 Score=25.91 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016154 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (394)
Q Consensus 278 i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 341 (394)
+...+..++..+..++++-.+....-+.....++.+-..+++++=.|+..=+++++.|+++--+
T Consensus 174 ~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~r 237 (361)
T PRK08156 174 WRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQ 237 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3344444444444444444445554444444444444556888888888999999988887443
No 61
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=37.44 E-value=1e+02 Score=19.04 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHH
Q 016154 309 TLFMRNAINEILRYGSK-NRLPEGLREQMLAHMQLRF 344 (394)
Q Consensus 309 ~~~~~~~~~~i~~~m~~-~~l~~~l~~rv~~y~~~~~ 344 (394)
+.-|.+.+.++.+||.. .++++.++.|+.++++-..
T Consensus 4 ~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~ 40 (43)
T PF07527_consen 4 RAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHh
Confidence 56789999999999866 4467899999999887543
No 62
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=36.65 E-value=3.8e+02 Score=25.54 Aligned_cols=67 Identities=4% Similarity=0.003 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016154 275 GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (394)
Q Consensus 275 ~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 341 (394)
...+...+..++..+..++++-.+....-+.....++.+=..+++++=.|+..=+++++.|.++--+
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~r 249 (359)
T PRK05702 183 LGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQR 249 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4444455555555555555544455555444444444444556788888888889999888876433
No 63
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=35.91 E-value=3.9e+02 Score=25.39 Aligned_cols=68 Identities=6% Similarity=0.033 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 016154 275 GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQL 342 (394)
Q Consensus 275 ~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~ 342 (394)
...+...+..+++.+..++++-.+....-+...-.++.+-..+++++=.|+..=+++++.|.++--+-
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re 243 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSE 243 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34444555555555555555545555555554444555555678888888899999999988875443
No 64
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=35.39 E-value=4e+02 Score=25.32 Aligned_cols=67 Identities=4% Similarity=-0.019 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016154 275 GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (394)
Q Consensus 275 ~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 341 (394)
...+...+..+++.++.++++-.+....-+.....++.+-..+++++=.|+..=+++++.|.++--+
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~r 242 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQR 242 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3344445555555555555544445555444444445555567888888899999999998876433
No 65
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=34.86 E-value=1.9e+02 Score=21.45 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=20.8
Q ss_pred HhchhhHHHHHHHHHHHHHHHHhCCCC
Q 016154 303 VHSAVRTLFMRNAINEILRYGSKNRLP 329 (394)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~m~~~~l~ 329 (394)
.+..+..++.++++++.++.+++++++
T Consensus 64 nDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 64 NDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344456677888899999999998875
No 66
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=33.77 E-value=32 Score=25.69 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhhccccHHHHHhhCCHHHHHHHHHHH
Q 016154 323 GSKNRLPEGLREQMLAHMQLRFKTAELQQEEVLEDLPKAIRSSISQHL 370 (394)
Q Consensus 323 m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~ 370 (394)
...+++|.++-+||..|+.|..+..+...+-===++||++--|+.+..
T Consensus 60 v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aA 107 (112)
T KOG3473|consen 60 VYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAA 107 (112)
T ss_pred EEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHh
Confidence 345889999999999999999877633211111246887777776543
No 67
>COG4325 Predicted membrane protein [Function unknown]
Probab=32.67 E-value=4.2e+02 Score=25.48 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=50.4
Q ss_pred cccccchhhhhHHHHHHHHHHhhhcc-----cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 016154 240 DFKHRSIWLGYTYSIYWSIVTLTTVG-----YGDLHAVNTGEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRN 314 (394)
Q Consensus 240 ~~~~~~~~~~Y~~sly~a~~t~ttvG-----ygdi~p~t~~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~ 314 (394)
|-.+......++.++=+++..++|+| +|-..|. .....+++..++++..+-|++..++..+.-.+.-++--.+
T Consensus 123 d~~nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~--~avtv~lLlaiisig~~iyfl~~l~~siq~~n~i~kv~~~ 200 (464)
T COG4325 123 DVPNQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK--VAVTVSLLLAIISIGALIYFLHHLMHSIQIDNIIDKVRLR 200 (464)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhhccCccccceeh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788899999999999995 3334444 3445556666666777777777777555444443333344
Q ss_pred HHHHHHHH
Q 016154 315 AINEILRY 322 (394)
Q Consensus 315 ~~~~i~~~ 322 (394)
.+..++++
T Consensus 201 t~~l~~ql 208 (464)
T COG4325 201 TLGLVDQL 208 (464)
T ss_pred HHHHHHHh
Confidence 44444443
No 68
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=32.58 E-value=41 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 016154 326 NRLPEGLREQMLAHMQLRFKTA 347 (394)
Q Consensus 326 ~~l~~~l~~rv~~y~~~~~~~~ 347 (394)
.++|+++++.|.+|.+|...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999997665
No 69
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.87 E-value=2e+02 Score=24.79 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHhCCC
Q 016154 307 VRTLFMRNAINEILRYGSKNRL 328 (394)
Q Consensus 307 ~~~~~~~~~~~~i~~~m~~~~l 328 (394)
++-+++|+++++.++.+++.+-
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888887766443
No 70
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.36 E-value=58 Score=21.76 Aligned_cols=18 Identities=33% Similarity=0.835 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHhhhccc
Q 016154 249 GYTYSIYWSIVTLTTVGY 266 (394)
Q Consensus 249 ~Y~~sly~a~~t~ttvGy 266 (394)
+|+.++.|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688899999887777777
No 71
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=30.17 E-value=90 Score=18.19 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCH-----HHHHHHHHH
Q 016154 316 INEILRYGSKNRLPE-----GLREQMLAH 339 (394)
Q Consensus 316 ~~~i~~~m~~~~l~~-----~l~~rv~~y 339 (394)
..++++.++..++|. ++++|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 456788888888885 477777765
No 72
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.84 E-value=5.2e+02 Score=24.97 Aligned_cols=65 Identities=3% Similarity=-0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 016154 279 FNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLR 343 (394)
Q Consensus 279 ~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~ 343 (394)
...+..++..++.++++-.+....-+...-.++.+-..+++++=+|+..=+++++.|.++--+-.
T Consensus 187 ~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~ 251 (386)
T PRK12468 187 LHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAM 251 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33333444444444444444455444444444455555788888888999999999887754433
No 73
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=29.77 E-value=3.9e+02 Score=28.41 Aligned_cols=91 Identities=8% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCceeccccCcccccchhhhhHHHHHHHHHHhhhcccCCCCCCC-----
Q 016154 199 TRLSKLICVTLFAVHSAGCFYFYLAAHHKIPENTWIGSQVNDFKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVN----- 273 (394)
Q Consensus 199 ~~l~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~W~~~~~~~~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t----- 273 (394)
.-+.+++...++.+|+++++....-.... ..| .+.-.+.-......|+|-|++++...|+. ..|.+
T Consensus 449 k~L~~Iv~~Y~~~~~llG~i~l~~wi~~~---~~~-----~~~l~~~gin~~W~aiFhAVSAFnNAGFs-L~~dSM~~F~ 519 (800)
T TIGR00934 449 KCLCSIVLVYFLGFNILGFVLLLPWINHV---KTY-----SEVVRSKGVSPTWWGFFTAMSAFANLGLT-LTPESMVSFN 519 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccH-----HHHHhhcCccHHHHHHHHHHHHHhcCCCC-cCCCcchhhc
Confidence 44566677778888988876654321110 011 11112222234567888899999998975 33433
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHH
Q 016154 274 --TGEKVFNMLYMLFNIGLTAYIIGNM 298 (394)
Q Consensus 274 --~~e~i~~i~~~i~g~~~~a~~i~~i 298 (394)
..-.+..++.+++|-..|..+.-.+
T Consensus 520 ~~~~vllvm~~LIi~GntGFPVllrli 546 (800)
T TIGR00934 520 KNSYLLLLMIWFIIIGNTGFPIFLRLI 546 (800)
T ss_pred cCccHHHHHHHHHHHcccchHHHHHHH
Confidence 2333445555666666665554433
No 74
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.08 E-value=5.1e+02 Score=24.69 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016154 276 EKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQ 341 (394)
Q Consensus 276 e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 341 (394)
..+...+..+++.++.++++-.+....-+..+..++.+-..+++++=+|+..=+++++.|.++--+
T Consensus 186 ~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~r 251 (358)
T PRK13109 186 ELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQ 251 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555567888888999999999998877543
No 75
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=27.96 E-value=1.2e+02 Score=19.61 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc--ccc------HHHHHhhCCHHHHHHH
Q 016154 326 NRLPEGLREQMLAHMQLRFKTA--ELQ------QEEVLEDLPKAIRSSI 366 (394)
Q Consensus 326 ~~l~~~l~~rv~~y~~~~~~~~--~~~------~~~il~~Lp~~Lr~ei 366 (394)
+++|....+|.-.|+++.-+-+ |.+ ..+.+.-=|...|+|+
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 4789999999999999886544 322 2334444466777775
No 76
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=25.33 E-value=5.9e+02 Score=24.11 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 016154 275 GEKVFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQL 342 (394)
Q Consensus 275 ~e~i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~ 342 (394)
...+...+..+++.+..++++-.+....-+...-.++.+-..+++++=.|+..=+++++.|.++--+-
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re 242 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQE 242 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 33344444555555555555444445544444444444445568888888889999999888875433
No 77
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=24.48 E-value=1.4e+02 Score=25.55 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=33.2
Q ss_pred HHHhCCCCHHHH---HHHHHHHHHHHhhc-----c----cc-HHHHHhhCCHHHHHHHHH
Q 016154 322 YGSKNRLPEGLR---EQMLAHMQLRFKTA-----E----LQ-QEEVLEDLPKAIRSSISQ 368 (394)
Q Consensus 322 ~m~~~~l~~~l~---~rv~~y~~~~~~~~-----~----~~-~~~il~~Lp~~Lr~ei~~ 368 (394)
|.-.++-|++.. .++.++|.-+|+.+ | -| ..-+++.||+++|++|..
T Consensus 40 Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~ 99 (192)
T PF06057_consen 40 YFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQ 99 (192)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhheeE
Confidence 444566666654 46677788888777 2 23 567889999999999854
No 78
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=24.31 E-value=1.3e+02 Score=25.58 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=19.9
Q ss_pred hchhhHHHHHHHHHHHHHHHHhCC
Q 016154 304 HSAVRTLFMRNAINEILRYGSKNR 327 (394)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~m~~~~ 327 (394)
-.+..+..|.+|++-+.+||+..+
T Consensus 20 ~~dFde~~F~~rL~Vl~EYlkrtn 43 (183)
T PF08475_consen 20 YNDFDENEFDNRLQVLTEYLKRTN 43 (183)
T ss_pred ccccchHHHHHHHHHHHHHHHhcC
Confidence 345667899999999999999854
No 79
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=24.22 E-value=83 Score=22.47 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=22.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhhhcccCCcCCCHHHHHhh
Q 016154 351 QEEVLEDLPKAIRSSISQHLFRGTVEKTYLFQGVSVDLIAQM 392 (394)
Q Consensus 351 ~~~il~~Lp~~Lr~ei~~~~~~~~l~~~~~F~~~~~~~l~~L 392 (394)
..++|..||+++|.||...+ --+...+++.+++|
T Consensus 29 AA~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~i 62 (79)
T PF14841_consen 29 AAEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEI 62 (79)
T ss_dssp HHHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHH
Confidence 55789999999999886544 34556666666554
No 80
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=23.97 E-value=5.2e+02 Score=24.16 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=31.0
Q ss_pred HhCCCCHHHHHHHHH-----HHHHHHhhc-cc-cHH------------HHHhhCCHHHHHHHHHHHHHhh
Q 016154 324 SKNRLPEGLREQMLA-----HMQLRFKTA-EL-QQE------------EVLEDLPKAIRSSISQHLFRGT 374 (394)
Q Consensus 324 ~~~~l~~~l~~rv~~-----y~~~~~~~~-~~-~~~------------~il~~Lp~~Lr~ei~~~~~~~~ 374 (394)
+...+|..+++.+++ ++++.-+++ .+ +-+ .-+..+|++||+.+...=..++
T Consensus 35 k~~~IP~gf~~vIk~~YP~~i~~~v~~q~LtiqE~r~li~~L~~~~~s~~l~~l~~~L~~kl~~FGi~~l 104 (314)
T PF07146_consen 35 KNKNIPQGFRSVIKENYPKVIYDFVVKQDLTIQEFRLLIDGLRNISSSGSLESLPPKLKEKLEDFGIERL 104 (314)
T ss_pred cCCCCcHHHHHHHHHHCcHHHHHHHHHccCcHHHHHHHHHHHhhhccccccccCCHHHHHHHHHcChHHH
Confidence 347888888887766 344444554 22 222 3345579999999986433333
No 81
>PRK06298 type III secretion system protein; Validated
Probab=23.79 E-value=6.4e+02 Score=24.02 Aligned_cols=62 Identities=8% Similarity=-0.054 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 016154 282 LYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLR 343 (394)
Q Consensus 282 ~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~ 343 (394)
+.-++..+..++++-.+....-+.....++.+=..+++++=+|+..=+++++.|.++--+-.
T Consensus 184 ~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~ 245 (356)
T PRK06298 184 LYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEI 245 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33333333334444334444444444444444455688888888999999998887754433
No 82
>COG3817 Predicted membrane protein [Function unknown]
Probab=23.65 E-value=2.4e+02 Score=25.28 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=23.3
Q ss_pred cccchhhhhHHHHHHHHHHhhhcccCCCCCCC
Q 016154 242 KHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVN 273 (394)
Q Consensus 242 ~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t 273 (394)
.|.+.-.++-.+++|+...+|-+| ||.-|.-
T Consensus 25 ~dktnp~r~~t~~FW~l~~~tFl~-g~~lp~~ 55 (313)
T COG3817 25 KDKTNPVRFGTGLFWGLFSLTFLG-GDRLPNI 55 (313)
T ss_pred cccCCCceecchHHHHHHHHHHhc-cccccch
Confidence 344445677889999999999888 7877763
No 83
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=23.43 E-value=8.4e+02 Score=25.24 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 016154 278 VFNMLYMLFNIGLTAYIIGNMTNLIVHSAVRTLFMRNAINEILRYGSKNRLPEGLREQMLAHMQLR 343 (394)
Q Consensus 278 i~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~ 343 (394)
+...+..++..+..++++-.+....-+..+..++.+-..+++++-.|+..=|++++.|.|+--+..
T Consensus 442 ~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~ 507 (609)
T PRK12772 442 LKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREM 507 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 334444444444444444444555545555555555556788889999999999999988754433
No 84
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=22.05 E-value=1.9e+02 Score=19.41 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhchhh
Q 016154 280 NMLYMLFNIGLTA-YIIGNMTNLIVHSAVR 308 (394)
Q Consensus 280 ~i~~~i~g~~~~a-~~i~~i~~~~~~~~~~ 308 (394)
-+++.+..+++|| ++...++++..++++.
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~hHq~k~ 40 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWVHHQDKK 40 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555556666 5666677776665543
No 85
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=85 Score=32.54 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=30.1
Q ss_pred HhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016154 260 TLTTVGYGDLHAVNTGEKVFNMLYMLFNIGLTAYII 295 (394)
Q Consensus 260 t~ttvGygdi~p~t~~e~i~~i~~~i~g~~~~a~~i 295 (394)
++++-||.|+...-+...+++.+.+++++.+|..+.
T Consensus 221 ~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 221 TFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred cccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999888888887776655
No 86
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=21.31 E-value=3.8e+02 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhhcccC--CCCC-CCch---hHHHHHHHHHHHHH
Q 016154 250 YTYSIYWSIVTLTTVGYG--DLHA-VNTG---EKVFNMLYMLFNIG 289 (394)
Q Consensus 250 Y~~sly~a~~t~ttvGyg--di~p-~t~~---e~i~~i~~~i~g~~ 289 (394)
..++++=+++.+.|+|.+ ..+| .+.. .+++.++.|++|-+
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRl 340 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRL 340 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCc
Confidence 578999999999999764 3222 2334 99999999999864
No 87
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.97 E-value=4.6e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------hhhHHHHHHHHHHHHHHHH
Q 016154 281 MLYMLFNIGLTAYIIGNMTNLIVHS-------------AVRTLFMRNAINEILRYGS 324 (394)
Q Consensus 281 i~~~i~g~~~~a~~i~~i~~~~~~~-------------~~~~~~~~~~~~~i~~~m~ 324 (394)
+++.++|+.++|++++-+.+.-... .-...+|+++++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 5678899999999997664332111 1235678888888876554
No 88
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.95 E-value=8.4e+02 Score=24.34 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=26.6
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016154 171 NLLRLWRLRRVGELFTRLEKDIRFTYFITRLSKLICVTLFAVHSAGCFYFYLA 223 (394)
Q Consensus 171 ~l~rllRl~ri~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~ac~~~~i~ 223 (394)
.+.|+.|+.|+.|+++-+.+.-.... +-. ++-+..++|.+..++++-+
T Consensus 98 ~~~r~nRllk~yRl~~F~~rTetrT~-~Pn----~fri~~lv~~~~ilfHWNa 145 (536)
T KOG0500|consen 98 SLERLNRLLKIYRLFEFFDRTETRTT-YPN----AFRISKLVHYCLILFHWNA 145 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccC-Cch----HHHHHHHHHHHHHHHHHhh
Confidence 45677777777777765554333221 122 3334455666666677555
No 89
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=20.88 E-value=1e+02 Score=22.27 Aligned_cols=48 Identities=31% Similarity=0.496 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc--cccHHHHHhhC
Q 016154 311 FMRNAINEILRYGSKNRLPEGLREQMLAHMQLRFKTA--ELQQEEVLEDL 358 (394)
Q Consensus 311 ~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~il~~L 358 (394)
-.++++..+.+++++++++-+|..+=.+|=+..++-- ..+-++.+++|
T Consensus 36 fl~eri~~L~~~L~kRgv~v~L~~~~S~yp~lV~~vLiG~i~Neeal~eL 85 (86)
T PF09153_consen 36 FLRERISRLIEFLKKRGVSVSLDEEPSDYPELVFKVLIGEISNEEALEEL 85 (86)
T ss_dssp HHH-HHHHHHHHHHHTT------B---SHHHHHHHHHTTSS-GGGGGGGB
T ss_pred HHHHHHHHHHHHHHhcCceeEEeecCCCchHHHHHHHhhhccchhhhhhc
Confidence 3456999999999999999999888777766665543 33334444444
No 90
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=20.87 E-value=1.7e+02 Score=30.04 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccccchhhhhHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHH
Q 016154 241 FKHRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNTGEKVFNMLYMLFNIG 289 (394)
Q Consensus 241 ~~~~~~~~~Y~~sly~a~~t~ttvGygdi~p~t~~e~i~~i~~~i~g~~ 289 (394)
.++..|.-+|+..+.||+.+++ |-+.-.+.-+.++.++-=++|.+
T Consensus 490 ~dg~EWsw~nlNtLcWAIGSIS----GamsE~~EkrF~VnviKdLL~Lc 534 (1053)
T COG5101 490 LDGKEWSWNNLNTLCWAIGSIS----GAMSEVNEKRFFVNVIKDLLALC 534 (1053)
T ss_pred hcCCccchhhHhHHHHHHhccc----chhhhHHHHHHHHHHHHHHHHHH
Confidence 4556666789999999999886 55655665555555555555544
No 91
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.62 E-value=1.1e+03 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.168 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016154 199 TRLSKLICVTLFAVHSAGCFYFYLA 223 (394)
Q Consensus 199 ~~l~~~~~~~l~~~h~~ac~~~~i~ 223 (394)
..++|.+..+.+++-.++..||.+-
T Consensus 660 ktflk~f~vfs~lliaF~lsFYVll 684 (929)
T KOG0510|consen 660 KTFLKSFMVFSILLIAFGLSFYVLL 684 (929)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeee
Confidence 4556666666666666666666553
No 92
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=20.51 E-value=3.6e+02 Score=19.90 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhhccccH----HHHHhhCCHHHHHHHHHHHHH
Q 016154 313 RNAINEILRYGSK-NRLPEGLREQMLAHMQLRFKTAELQQ----EEVLEDLPKAIRSSISQHLFR 372 (394)
Q Consensus 313 ~~~~~~i~~~m~~-~~l~~~l~~rv~~y~~~~~~~~~~~~----~~il~~Lp~~Lr~ei~~~~~~ 372 (394)
.+..+.+.++|.. .+++++-+.++.+.++..-... .+. +.+-..++++.|.++...+.+
T Consensus 18 ~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 18 EEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEA-PDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456677777777 4999988899988876554333 232 334445678888877665554
No 93
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=20.48 E-value=1e+03 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=9.4
Q ss_pred HHhhcccccccccc
Q 016154 132 LRYVTRLWFTMDVA 145 (394)
Q Consensus 132 ~~Yl~~~~f~~Dli 145 (394)
..|++..|.++|++
T Consensus 416 ~~y~~~~wn~~d~~ 429 (743)
T TIGR00870 416 FEYIHQLWNILDFG 429 (743)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677767777763
No 94
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.03 E-value=1.6e+02 Score=17.56 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCCCHH
Q 016154 317 NEILRYGSKNRLPEG 331 (394)
Q Consensus 317 ~~i~~~m~~~~l~~~ 331 (394)
+++++|+..++++.+
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578888888888753
Done!