Query 016155
Match_columns 394
No_of_seqs 214 out of 956
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07942 N2227: N2227-like pro 100.0 9.4E-83 2E-87 616.5 24.4 266 112-384 2-270 (270)
2 KOG2798 Putative trehalase [Ca 100.0 7.7E-82 1.7E-86 611.7 20.3 295 85-386 69-366 (369)
3 PLN02233 ubiquinone biosynthes 99.7 3.9E-15 8.6E-20 143.9 21.0 194 121-356 22-247 (261)
4 COG2226 UbiE Methylase involve 99.7 1.2E-15 2.6E-20 146.3 16.9 154 156-354 39-221 (238)
5 PF13489 Methyltransf_23: Meth 99.7 3.8E-16 8.2E-21 136.2 12.2 146 156-355 9-161 (161)
6 PRK11207 tellurite resistance 99.7 9.5E-16 2.1E-20 142.1 15.4 137 171-355 30-168 (197)
7 PLN02396 hexaprenyldihydroxybe 99.7 7.1E-15 1.5E-19 146.7 21.9 146 171-357 131-289 (322)
8 PRK13255 thiopurine S-methyltr 99.7 3.9E-15 8.5E-20 140.8 18.9 192 152-383 22-217 (218)
9 PRK11036 putative S-adenosyl-L 99.7 1.8E-15 4E-20 144.8 16.1 156 171-366 44-218 (255)
10 PF05724 TPMT: Thiopurine S-me 99.7 1.3E-15 2.9E-20 144.2 14.6 164 154-356 24-189 (218)
11 TIGR03840 TMPT_Se_Te thiopurin 99.7 5.7E-15 1.2E-19 139.3 17.7 150 171-356 34-186 (213)
12 PF01209 Ubie_methyltran: ubiE 99.6 7.6E-16 1.6E-20 147.1 9.9 144 171-356 47-219 (233)
13 TIGR00477 tehB tellurite resis 99.6 4.7E-15 1E-19 137.2 14.7 137 171-356 30-168 (195)
14 PRK15068 tRNA mo(5)U34 methylt 99.6 7.7E-15 1.7E-19 146.2 16.3 143 171-356 122-273 (322)
15 PRK10258 biotin biosynthesis p 99.6 1.8E-14 3.8E-19 137.1 18.0 174 126-354 5-184 (251)
16 PRK14103 trans-aconitate 2-met 99.6 1.2E-14 2.6E-19 139.1 16.5 134 171-354 29-181 (255)
17 PRK13256 thiopurine S-methyltr 99.6 1.5E-14 3.3E-19 137.8 16.4 163 154-354 30-194 (226)
18 PLN02244 tocopherol O-methyltr 99.6 1.8E-14 4E-19 144.3 16.9 145 171-356 118-277 (340)
19 TIGR02752 MenG_heptapren 2-hep 99.6 1.4E-13 3E-18 129.0 20.2 144 171-356 45-217 (231)
20 PF12847 Methyltransf_18: Meth 99.6 1E-14 2.2E-19 120.9 10.8 101 172-314 2-109 (112)
21 TIGR00452 methyltransferase, p 99.6 2.6E-14 5.6E-19 142.3 15.5 143 171-356 121-272 (314)
22 PRK12335 tellurite resistance 99.6 4E-14 8.6E-19 138.4 16.4 135 172-355 121-257 (287)
23 PF08241 Methyltransf_11: Meth 99.6 1.1E-14 2.3E-19 115.8 10.0 93 176-313 1-94 (95)
24 PRK01683 trans-aconitate 2-met 99.5 1.7E-13 3.7E-18 130.8 17.0 138 171-356 31-186 (258)
25 COG2227 UbiG 2-polyprenyl-3-me 99.5 9.2E-14 2E-18 132.7 13.5 170 170-384 58-241 (243)
26 PF03848 TehB: Tellurite resis 99.5 1.5E-13 3.2E-18 128.1 14.2 134 171-354 30-166 (192)
27 PTZ00098 phosphoethanolamine N 99.5 2.9E-13 6.3E-18 131.0 14.8 142 171-356 52-201 (263)
28 TIGR00740 methyltransferase, p 99.5 5.5E-13 1.2E-17 126.3 16.3 141 171-354 53-224 (239)
29 smart00828 PKS_MT Methyltransf 99.5 3.6E-13 7.9E-18 125.6 14.6 142 174-358 2-145 (224)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.2E-13 1.3E-17 127.2 16.1 140 171-354 56-227 (247)
31 PLN02585 magnesium protoporphy 99.5 1.5E-12 3.3E-17 129.7 17.2 148 171-359 144-301 (315)
32 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.1E-12 2.5E-17 131.8 16.2 141 171-358 113-257 (340)
33 PF02353 CMAS: Mycolic acid cy 99.5 1.9E-12 4.2E-17 126.5 17.0 159 156-362 50-222 (273)
34 TIGR02021 BchM-ChlM magnesium 99.5 3.2E-12 6.9E-17 119.5 17.2 159 154-362 43-211 (219)
35 PF13847 Methyltransf_31: Meth 99.4 6.2E-13 1.3E-17 117.4 11.3 104 171-315 3-109 (152)
36 PRK11873 arsM arsenite S-adeno 99.4 1.9E-12 4.2E-17 124.7 15.7 141 171-355 77-228 (272)
37 PLN02336 phosphoethanolamine N 99.4 4.1E-12 8.8E-17 131.9 16.9 140 171-355 266-412 (475)
38 PRK05785 hypothetical protein; 99.4 1.6E-12 3.5E-17 123.3 12.7 106 156-316 41-147 (226)
39 PRK00216 ubiE ubiquinone/menaq 99.4 1.7E-11 3.7E-16 114.0 19.1 145 171-356 51-224 (239)
40 PRK05134 bifunctional 3-demeth 99.4 1.7E-11 3.6E-16 115.2 18.9 156 156-356 36-204 (233)
41 TIGR01983 UbiG ubiquinone bios 99.4 2E-11 4.4E-16 113.5 18.8 145 171-356 45-202 (224)
42 TIGR03438 probable methyltrans 99.4 8.1E-12 1.8E-16 123.2 15.9 140 129-313 26-174 (301)
43 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.6E-11 5.7E-16 111.5 17.6 142 171-356 39-209 (223)
44 TIGR02072 BioC biotin biosynth 99.4 4.5E-12 9.7E-17 117.5 12.0 137 171-354 34-173 (240)
45 TIGR00537 hemK_rel_arch HemK-r 99.3 3.4E-11 7.3E-16 109.3 15.9 125 171-356 19-164 (179)
46 PRK08317 hypothetical protein; 99.3 3.4E-11 7.4E-16 111.2 16.1 140 171-355 19-174 (241)
47 TIGR00138 gidB 16S rRNA methyl 99.3 3.1E-11 6.8E-16 111.0 15.6 122 171-356 42-168 (181)
48 PRK07580 Mg-protoporphyrin IX 99.3 6.7E-11 1.4E-15 110.3 17.5 142 171-357 63-214 (230)
49 PRK08287 cobalt-precorrin-6Y C 99.3 1E-10 2.3E-15 106.8 18.3 123 171-356 31-155 (187)
50 PRK11705 cyclopropane fatty ac 99.3 2.9E-11 6.2E-16 123.5 16.0 137 171-357 167-312 (383)
51 PRK00107 gidB 16S rRNA methylt 99.3 1.6E-10 3.5E-15 107.2 19.5 122 171-356 45-168 (187)
52 PRK11088 rrmA 23S rRNA methylt 99.3 7.3E-12 1.6E-16 121.4 10.9 108 156-321 74-186 (272)
53 PF08242 Methyltransf_12: Meth 99.3 4.7E-13 1E-17 109.4 2.1 97 176-312 1-99 (99)
54 PRK06202 hypothetical protein; 99.3 4.2E-11 9.1E-16 113.0 14.1 139 171-356 60-221 (232)
55 PLN02336 phosphoethanolamine N 99.3 3.2E-11 7E-16 125.2 14.4 141 171-354 37-179 (475)
56 TIGR00406 prmA ribosomal prote 99.3 6.4E-11 1.4E-15 116.2 15.7 133 156-356 149-282 (288)
57 TIGR02081 metW methionine bios 99.3 1.1E-10 2.3E-15 107.5 16.2 148 157-356 4-166 (194)
58 KOG1270 Methyltransferases [Co 99.3 2.1E-11 4.6E-16 117.9 11.9 145 172-355 90-247 (282)
59 PRK00517 prmA ribosomal protei 99.3 7.6E-11 1.7E-15 113.1 15.5 128 156-356 109-237 (250)
60 KOG1540 Ubiquinone biosynthesi 99.3 4.5E-11 9.7E-16 115.3 13.6 145 171-354 100-278 (296)
61 PF13649 Methyltransf_25: Meth 99.3 1.1E-11 2.3E-16 102.2 8.0 93 175-310 1-101 (101)
62 COG2230 Cfa Cyclopropane fatty 99.3 7.1E-11 1.5E-15 115.9 14.7 155 156-359 60-225 (283)
63 PRK00377 cbiT cobalt-precorrin 99.3 2.2E-10 4.8E-15 106.0 16.7 149 171-379 40-192 (198)
64 PRK14968 putative methyltransf 99.2 2.9E-10 6.4E-15 102.2 15.9 129 171-356 23-172 (188)
65 KOG1271 Methyltransferases [Ge 99.2 8.6E-11 1.9E-15 108.6 11.7 152 141-356 42-204 (227)
66 TIGR02469 CbiT precorrin-6Y C5 99.2 2.8E-10 6E-15 95.2 13.4 100 171-314 19-120 (124)
67 PRK14967 putative methyltransf 99.2 3.3E-10 7.1E-15 106.7 15.3 125 171-355 36-182 (223)
68 TIGR03534 RF_mod_PrmC protein- 99.2 3.9E-10 8.5E-15 106.3 14.7 137 156-356 76-240 (251)
69 PF08003 Methyltransf_9: Prote 99.2 2.7E-10 5.8E-15 112.7 13.5 143 171-355 115-265 (315)
70 PF13659 Methyltransf_26: Meth 99.2 1.4E-10 3E-15 97.0 9.3 104 173-315 2-114 (117)
71 TIGR01177 conserved hypothetic 99.2 2.4E-10 5.3E-15 113.9 12.7 123 171-355 182-313 (329)
72 PRK04266 fibrillarin; Provisio 99.2 1.6E-09 3.5E-14 103.3 17.5 137 171-357 72-210 (226)
73 PRK00121 trmB tRNA (guanine-N( 99.2 2E-10 4.4E-15 107.0 11.0 127 171-353 40-177 (202)
74 TIGR02716 C20_methyl_CrtF C-20 99.1 1.5E-09 3.2E-14 106.8 16.9 140 171-354 149-303 (306)
75 smart00138 MeTrc Methyltransfe 99.1 3.3E-10 7.2E-15 110.0 11.0 117 171-313 99-239 (264)
76 PHA03411 putative methyltransf 99.1 7.2E-10 1.6E-14 108.6 13.2 134 171-362 64-219 (279)
77 PTZ00146 fibrillarin; Provisio 99.1 1.5E-09 3.2E-14 107.3 15.1 160 137-357 106-271 (293)
78 TIGR03587 Pse_Me-ase pseudamin 99.1 1.4E-09 3E-14 101.9 12.7 92 171-313 43-139 (204)
79 PF05401 NodS: Nodulation prot 99.1 7.3E-10 1.6E-14 103.6 9.7 130 171-354 43-176 (201)
80 COG4123 Predicted O-methyltran 99.1 6.5E-09 1.4E-13 100.5 16.5 140 171-366 44-203 (248)
81 PRK13944 protein-L-isoaspartat 99.0 3.1E-09 6.7E-14 99.2 13.3 110 155-314 59-171 (205)
82 PRK06922 hypothetical protein; 99.0 1.2E-09 2.6E-14 117.5 11.9 104 171-315 418-536 (677)
83 PRK07402 precorrin-6B methylas 99.0 1.2E-08 2.5E-13 94.1 16.9 99 171-314 40-140 (196)
84 TIGR00080 pimt protein-L-isoas 99.0 2.8E-09 6.1E-14 99.8 12.7 108 156-314 65-175 (215)
85 PRK11188 rrmJ 23S rRNA methylt 99.0 5.2E-09 1.1E-13 98.3 14.3 94 171-314 51-163 (209)
86 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.5E-09 3.2E-14 100.3 10.4 129 171-354 16-155 (194)
87 TIGR03533 L3_gln_methyl protei 99.0 1.1E-08 2.3E-13 100.6 16.5 125 171-355 121-272 (284)
88 PRK09328 N5-glutamine S-adenos 99.0 1.2E-08 2.5E-13 98.0 15.9 124 171-355 108-260 (275)
89 PF05175 MTS: Methyltransferas 99.0 7E-09 1.5E-13 93.9 13.2 109 155-313 22-137 (170)
90 PRK13942 protein-L-isoaspartat 99.0 8.1E-09 1.8E-13 97.0 13.0 112 152-314 60-174 (212)
91 TIGR03704 PrmC_rel_meth putati 99.0 1.4E-08 3E-13 98.1 14.5 125 172-356 87-239 (251)
92 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 3.6E-09 7.7E-14 102.9 10.1 218 133-383 21-256 (256)
93 cd02440 AdoMet_MTases S-adenos 98.9 8.5E-09 1.8E-13 80.5 10.4 100 174-314 1-102 (107)
94 PRK15001 SAM-dependent 23S rib 98.9 9.3E-09 2E-13 105.0 13.3 115 158-315 218-339 (378)
95 PRK14966 unknown domain/N5-glu 98.9 3E-08 6.6E-13 102.3 17.0 126 171-356 251-404 (423)
96 PRK00312 pcm protein-L-isoaspa 98.9 1.5E-08 3.2E-13 94.4 12.9 109 155-314 65-173 (212)
97 PRK09489 rsmC 16S ribosomal RN 98.9 1.4E-08 3.1E-13 102.4 13.2 100 172-316 197-303 (342)
98 PF07021 MetW: Methionine bios 98.9 2E-08 4.4E-13 93.6 13.0 134 171-359 13-169 (193)
99 PRK11805 N5-glutamine S-adenos 98.9 4.3E-08 9.4E-13 97.4 16.3 122 173-354 135-283 (307)
100 PF06325 PrmA: Ribosomal prote 98.9 1.1E-08 2.4E-13 101.4 11.9 130 155-356 150-282 (295)
101 COG2264 PrmA Ribosomal protein 98.9 2.4E-08 5.2E-13 99.0 14.1 136 155-356 151-287 (300)
102 KOG4300 Predicted methyltransf 98.9 1.1E-08 2.4E-13 96.4 10.0 137 171-356 76-231 (252)
103 PHA03412 putative methyltransf 98.9 1.8E-08 3.9E-13 97.0 11.7 140 171-362 49-207 (241)
104 PF06080 DUF938: Protein of un 98.9 5.2E-08 1.1E-12 91.8 14.1 162 154-356 12-191 (204)
105 TIGR00536 hemK_fam HemK family 98.8 1.1E-07 2.5E-12 92.9 16.9 123 173-355 116-267 (284)
106 PLN02232 ubiquinone biosynthes 98.8 1.8E-08 3.8E-13 90.7 9.7 95 259-356 27-146 (160)
107 KOG2361 Predicted methyltransf 98.8 3.3E-08 7.2E-13 94.9 11.9 160 155-356 56-236 (264)
108 COG4106 Tam Trans-aconitate me 98.8 1.1E-08 2.4E-13 96.9 8.1 119 140-313 2-126 (257)
109 PRK00811 spermidine synthase; 98.8 3.3E-08 7.1E-13 97.1 11.3 108 171-314 76-189 (283)
110 PRK01544 bifunctional N5-gluta 98.8 8.3E-08 1.8E-12 101.5 14.9 124 172-355 139-291 (506)
111 PRK14121 tRNA (guanine-N(7)-)- 98.8 4.8E-08 1.1E-12 100.1 12.4 102 171-313 122-232 (390)
112 TIGR00438 rrmJ cell division p 98.8 3E-08 6.4E-13 90.9 9.4 94 171-314 32-144 (188)
113 PRK03612 spermidine synthase; 98.7 1.8E-07 4E-12 99.2 14.7 133 171-350 297-437 (521)
114 TIGR00417 speE spermidine synt 98.7 1.2E-07 2.7E-12 92.2 12.3 122 152-314 57-184 (270)
115 KOG1541 Predicted protein carb 98.7 6.3E-08 1.4E-12 92.1 9.8 121 171-351 50-181 (270)
116 COG4976 Predicted methyltransf 98.7 1.6E-08 3.5E-13 96.6 5.8 134 171-356 125-264 (287)
117 smart00650 rADc Ribosomal RNA 98.7 9.2E-08 2E-12 86.3 10.3 97 171-313 13-110 (169)
118 PLN03075 nicotianamine synthas 98.7 1.2E-07 2.6E-12 94.0 12.0 104 171-314 123-231 (296)
119 PRK01581 speE spermidine synth 98.7 2.6E-07 5.7E-12 94.0 13.8 139 171-357 150-297 (374)
120 PF05148 Methyltransf_8: Hypot 98.7 3.6E-07 7.7E-12 86.5 13.6 144 127-356 41-184 (219)
121 KOG2940 Predicted methyltransf 98.7 4.6E-08 1E-12 93.6 7.6 177 133-356 34-226 (325)
122 PRK04457 spermidine synthase; 98.7 2.3E-07 5E-12 90.2 12.2 103 171-313 66-174 (262)
123 PRK13943 protein-L-isoaspartat 98.7 2.1E-07 4.6E-12 93.3 12.0 109 155-314 67-178 (322)
124 PLN02781 Probable caffeoyl-CoA 98.6 2.4E-07 5.3E-12 88.6 11.3 111 156-314 59-176 (234)
125 COG2242 CobL Precorrin-6B meth 98.6 1.7E-06 3.7E-11 80.4 15.0 123 170-355 33-159 (187)
126 PF05219 DREV: DREV methyltran 98.6 5.9E-07 1.3E-11 87.4 12.4 140 171-364 94-245 (265)
127 PRK15128 23S rRNA m(5)C1962 me 98.6 9E-07 2E-11 91.1 13.6 125 171-347 220-355 (396)
128 PLN02366 spermidine synthase 98.5 8.8E-07 1.9E-11 88.4 12.0 108 171-314 91-204 (308)
129 PRK10901 16S rRNA methyltransf 98.5 8E-07 1.7E-11 92.0 12.1 130 171-354 244-398 (427)
130 PF03291 Pox_MCEL: mRNA cappin 98.5 1.9E-06 4.1E-11 86.8 13.8 113 171-314 62-184 (331)
131 PLN02672 methionine S-methyltr 98.5 1.8E-06 4E-11 98.1 14.9 155 172-369 119-317 (1082)
132 KOG3010 Methyltransferase [Gen 98.5 4.9E-07 1.1E-11 87.0 8.8 102 174-324 36-140 (261)
133 PF05891 Methyltransf_PK: AdoM 98.5 3.1E-06 6.7E-11 80.5 14.0 140 171-356 55-200 (218)
134 PRK11783 rlmL 23S rRNA m(2)G24 98.5 6.1E-07 1.3E-11 98.4 10.5 130 171-356 538-679 (702)
135 COG2521 Predicted archaeal met 98.5 1.1E-06 2.4E-11 84.4 10.8 152 155-354 119-274 (287)
136 KOG3045 Predicted RNA methylas 98.5 1.1E-06 2.5E-11 85.4 10.9 141 128-356 150-290 (325)
137 PRK14904 16S rRNA methyltransf 98.5 1.3E-06 2.9E-11 90.8 11.9 100 171-313 250-374 (445)
138 PF01135 PCMT: Protein-L-isoas 98.5 1.7E-06 3.8E-11 81.7 11.6 139 128-317 18-174 (209)
139 PF05185 PRMT5: PRMT5 arginine 98.4 9.8E-07 2.1E-11 92.2 10.7 115 156-313 170-294 (448)
140 PF01596 Methyltransf_3: O-met 98.4 1E-06 2.2E-11 83.1 9.7 111 156-314 36-153 (205)
141 KOG2899 Predicted methyltransf 98.4 1E-05 2.2E-10 78.2 15.8 197 171-386 58-279 (288)
142 COG2263 Predicted RNA methylas 98.4 1.4E-06 3.1E-11 81.2 9.7 127 171-363 45-178 (198)
143 PLN02476 O-methyltransferase 98.4 2.7E-06 5.8E-11 83.9 12.0 117 156-321 109-232 (278)
144 PF11968 DUF3321: Putative met 98.4 7.8E-06 1.7E-10 77.7 14.5 140 152-356 31-180 (219)
145 COG2890 HemK Methylase of poly 98.4 8.3E-06 1.8E-10 80.3 15.0 120 174-354 113-260 (280)
146 PRK04148 hypothetical protein; 98.4 3.1E-06 6.8E-11 75.0 10.8 99 155-307 3-102 (134)
147 PRK14903 16S rRNA methyltransf 98.4 2.3E-06 4.9E-11 88.9 10.9 102 171-313 237-363 (431)
148 PRK14902 16S rRNA methyltransf 98.3 4.1E-06 8.8E-11 87.0 11.8 102 171-313 250-376 (444)
149 TIGR00479 rumA 23S rRNA (uraci 98.3 9E-06 1.9E-10 84.0 13.5 112 155-313 279-393 (431)
150 PRK03522 rumB 23S rRNA methylu 98.3 5.8E-06 1.3E-10 82.2 11.5 40 171-210 173-212 (315)
151 PRK14896 ksgA 16S ribosomal RN 98.3 7.4E-06 1.6E-10 79.2 11.5 52 156-210 17-68 (258)
152 PRK13168 rumA 23S rRNA m(5)U19 98.3 7.1E-06 1.5E-10 85.3 12.0 124 171-356 297-423 (443)
153 COG2519 GCD14 tRNA(1-methylade 98.3 1.1E-05 2.3E-10 78.4 12.2 147 150-362 76-226 (256)
154 COG2813 RsmC 16S RNA G1207 met 98.3 9.8E-06 2.1E-10 80.4 12.0 117 157-320 147-272 (300)
155 PRK10909 rsmD 16S rRNA m(2)G96 98.2 8.3E-06 1.8E-10 76.6 10.9 39 172-210 54-93 (199)
156 TIGR00446 nop2p NOL1/NOP2/sun 98.2 8E-06 1.7E-10 79.3 10.8 101 171-313 71-196 (264)
157 PLN02589 caffeoyl-CoA O-methyl 98.2 9.4E-06 2E-10 78.7 11.1 117 156-321 70-194 (247)
158 KOG1975 mRNA cap methyltransfe 98.2 7.9E-06 1.7E-10 81.7 10.1 137 142-317 84-238 (389)
159 PF01739 CheR: CheR methyltran 98.2 4.6E-06 9.9E-11 78.2 8.0 124 171-313 31-172 (196)
160 PRK14901 16S rRNA methyltransf 98.2 7.8E-06 1.7E-10 84.8 9.8 131 171-353 252-409 (434)
161 PF01564 Spermine_synth: Sperm 98.2 5.2E-05 1.1E-09 73.2 14.8 107 171-314 76-189 (246)
162 COG1041 Predicted DNA modifica 98.2 9.9E-06 2.1E-10 81.8 9.9 141 152-356 180-329 (347)
163 TIGR00095 RNA methyltransferas 98.1 1.7E-05 3.7E-10 73.6 10.6 40 171-210 49-89 (189)
164 PRK00274 ksgA 16S ribosomal RN 98.1 1.6E-05 3.4E-10 77.6 10.5 52 156-210 30-81 (272)
165 COG2518 Pcm Protein-L-isoaspar 98.1 3.6E-05 7.8E-10 72.9 12.4 110 156-316 60-170 (209)
166 PTZ00338 dimethyladenosine tra 98.1 2E-05 4.3E-10 78.2 11.2 91 156-292 24-116 (294)
167 TIGR00563 rsmB ribosomal RNA s 98.1 2.2E-05 4.8E-10 81.2 11.5 41 171-211 238-280 (426)
168 PF03141 Methyltransf_29: Puta 98.1 3E-06 6.4E-11 88.8 4.3 147 156-356 101-252 (506)
169 PF08704 GCD14: tRNA methyltra 98.1 2.5E-05 5.5E-10 75.8 10.4 163 139-363 11-178 (247)
170 PF02390 Methyltransf_4: Putat 98.1 1.3E-05 2.7E-10 74.9 7.9 102 172-313 18-130 (195)
171 KOG1499 Protein arginine N-met 98.0 2E-05 4.3E-10 79.5 9.4 101 171-313 60-164 (346)
172 PRK10611 chemotaxis methyltran 98.0 2.9E-05 6.4E-10 76.9 10.3 121 171-313 115-259 (287)
173 TIGR00478 tly hemolysin TlyA f 98.0 8.2E-05 1.8E-09 71.4 13.0 37 171-207 75-112 (228)
174 PF12147 Methyltransf_20: Puta 98.0 0.00015 3.3E-09 71.8 15.0 247 62-356 27-297 (311)
175 TIGR02085 meth_trns_rumB 23S r 98.0 4.3E-05 9.2E-10 78.0 11.4 119 172-356 234-355 (374)
176 COG4122 Predicted O-methyltran 98.0 5.1E-05 1.1E-09 72.5 10.8 99 171-313 59-163 (219)
177 PLN02823 spermine synthase 98.0 4.7E-05 1E-09 77.0 10.7 109 171-317 103-222 (336)
178 PF01170 UPF0020: Putative RNA 97.9 3.2E-05 6.9E-10 71.2 7.8 124 171-356 28-170 (179)
179 TIGR00755 ksgA dimethyladenosi 97.9 0.00013 2.7E-09 70.3 11.9 52 156-210 17-68 (253)
180 COG0500 SmtA SAM-dependent met 97.9 0.00015 3.3E-09 57.5 10.5 99 175-315 52-154 (257)
181 PF00891 Methyltransf_2: O-met 97.9 0.00011 2.3E-09 69.8 11.1 96 171-318 100-201 (241)
182 TIGR03439 methyl_EasF probable 97.9 0.00038 8.3E-09 70.0 15.1 141 129-313 39-194 (319)
183 PRK00536 speE spermidine synth 97.8 0.00016 3.5E-09 70.8 11.0 98 171-314 72-169 (262)
184 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.00014 3E-09 71.5 10.5 120 156-318 34-185 (311)
185 COG0421 SpeE Spermidine syntha 97.8 0.00027 5.9E-09 69.9 12.2 106 172-314 77-188 (282)
186 PRK11727 23S rRNA mA1618 methy 97.7 0.00064 1.4E-08 68.4 14.3 43 171-213 114-158 (321)
187 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00025 5.5E-09 78.0 11.0 104 171-313 190-344 (702)
188 COG1352 CheR Methylase of chem 97.7 0.00042 9.2E-09 68.1 11.2 124 171-313 96-238 (268)
189 KOG1269 SAM-dependent methyltr 97.6 0.00014 3.1E-09 74.3 7.5 146 171-357 110-268 (364)
190 KOG1661 Protein-L-isoaspartate 97.6 0.00031 6.7E-09 66.8 9.1 124 152-318 68-196 (237)
191 COG0220 Predicted S-adenosylme 97.6 0.00037 7.9E-09 67.0 9.4 102 172-313 49-161 (227)
192 TIGR02987 met_A_Alw26 type II 97.5 0.00059 1.3E-08 72.4 11.2 43 171-213 31-83 (524)
193 COG3963 Phospholipid N-methylt 97.5 0.0012 2.7E-08 60.9 11.5 104 171-318 48-160 (194)
194 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00033 7.1E-09 69.8 8.5 52 156-210 7-61 (296)
195 PF02475 Met_10: Met-10+ like- 97.5 0.00048 1E-08 64.9 8.5 120 125-312 77-198 (200)
196 COG0030 KsgA Dimethyladenosine 97.5 0.00095 2.1E-08 65.3 10.8 79 171-292 30-110 (259)
197 KOG2352 Predicted spermine/spe 97.4 0.0011 2.4E-08 69.6 11.3 121 147-315 28-160 (482)
198 PF10294 Methyltransf_16: Puta 97.4 0.00064 1.4E-08 62.1 8.4 106 171-313 45-153 (173)
199 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00094 2E-08 68.7 9.6 96 172-313 58-155 (382)
200 PF01728 FtsJ: FtsJ-like methy 97.3 0.00086 1.9E-08 60.8 7.3 34 171-204 23-59 (181)
201 KOG3178 Hydroxyindole-O-methyl 97.3 0.0037 8E-08 63.3 12.4 134 173-356 179-329 (342)
202 KOG1500 Protein arginine N-met 97.2 0.0018 3.8E-08 65.6 9.9 99 171-313 177-279 (517)
203 PF09243 Rsm22: Mitochondrial 97.2 0.0037 8E-08 61.4 11.7 58 155-215 20-80 (274)
204 PF09445 Methyltransf_15: RNA 97.2 0.00062 1.3E-08 62.3 5.3 72 174-284 2-74 (163)
205 PF08123 DOT1: Histone methyla 97.2 0.0017 3.6E-08 61.5 8.4 117 171-318 42-160 (205)
206 PRK01544 bifunctional N5-gluta 97.0 0.0025 5.3E-08 67.8 9.1 102 171-313 347-459 (506)
207 PF03602 Cons_hypoth95: Conser 97.0 0.002 4.3E-08 59.7 7.3 101 171-313 42-150 (183)
208 PF13679 Methyltransf_32: Meth 96.9 0.011 2.4E-07 52.0 10.7 41 171-211 25-71 (141)
209 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.004 8.6E-08 64.0 8.2 97 172-313 45-144 (374)
210 COG1092 Predicted SAM-dependen 96.8 0.0054 1.2E-07 63.4 9.1 134 171-354 217-363 (393)
211 PF10672 Methyltrans_SAM: S-ad 96.8 0.0033 7.1E-08 62.4 7.1 138 171-362 123-271 (286)
212 PRK11760 putative 23S rRNA C24 96.7 0.014 3E-07 59.5 11.1 86 171-309 211-296 (357)
213 KOG0820 Ribosomal RNA adenine 96.5 0.012 2.5E-07 58.3 8.9 49 156-207 46-94 (315)
214 COG2265 TrmA SAM-dependent met 96.5 0.0086 1.9E-07 62.7 8.4 125 171-356 293-419 (432)
215 TIGR02143 trmA_only tRNA (urac 96.5 0.0069 1.5E-07 61.5 7.1 38 173-210 199-236 (353)
216 PRK11933 yebU rRNA (cytosine-C 96.5 0.019 4.2E-07 60.7 10.6 40 171-210 113-155 (470)
217 PF01269 Fibrillarin: Fibrilla 96.4 0.018 3.8E-07 55.4 9.2 123 137-314 47-176 (229)
218 KOG3987 Uncharacterized conser 96.4 0.001 2.3E-08 63.4 0.9 141 170-364 111-265 (288)
219 KOG1663 O-methyltransferase [S 96.4 0.049 1.1E-06 52.6 11.8 124 138-313 50-180 (237)
220 PRK10742 putative methyltransf 96.3 0.01 2.3E-07 57.8 7.1 41 173-213 90-130 (250)
221 PRK05031 tRNA (uracil-5-)-meth 96.3 0.01 2.2E-07 60.5 7.2 38 173-210 208-245 (362)
222 KOG3420 Predicted RNA methylas 96.3 0.0075 1.6E-07 54.8 5.4 52 156-210 36-88 (185)
223 COG2520 Predicted methyltransf 96.3 0.067 1.5E-06 54.5 12.8 145 141-355 171-318 (341)
224 COG1064 AdhP Zn-dependent alco 96.2 0.014 3.1E-07 59.2 7.6 40 171-210 166-207 (339)
225 KOG2904 Predicted methyltransf 96.2 0.039 8.4E-07 54.8 10.1 61 146-210 127-189 (328)
226 PF02527 GidB: rRNA small subu 96.1 0.04 8.7E-07 51.3 9.4 120 174-355 51-173 (184)
227 PF03059 NAS: Nicotianamine sy 96.0 0.071 1.5E-06 52.8 11.3 103 171-313 120-227 (276)
228 PF00398 RrnaAD: Ribosomal RNA 95.8 0.041 8.9E-07 53.4 8.5 37 171-207 30-66 (262)
229 cd00315 Cyt_C5_DNA_methylase C 95.8 0.32 6.9E-06 47.7 14.8 37 174-210 2-39 (275)
230 PF00145 DNA_methylase: C-5 cy 95.8 0.12 2.6E-06 50.0 11.7 149 174-386 2-165 (335)
231 PF04445 SAM_MT: Putative SAM- 95.8 0.01 2.2E-07 57.4 4.1 80 173-284 77-156 (234)
232 COG0742 N6-adenine-specific me 95.7 0.067 1.5E-06 50.1 9.2 38 171-208 43-81 (187)
233 COG4076 Predicted RNA methylas 95.7 0.043 9.4E-07 51.9 7.8 114 145-313 16-132 (252)
234 COG0357 GidB Predicted S-adeno 95.7 0.42 9.1E-06 45.8 14.6 134 172-366 68-204 (215)
235 PRK13699 putative methylase; P 95.4 0.12 2.5E-06 49.6 9.9 76 261-354 3-93 (227)
236 KOG3191 Predicted N6-DNA-methy 95.3 0.19 4.1E-06 47.3 10.7 40 171-210 43-85 (209)
237 PF07757 AdoMet_MTase: Predict 95.2 0.061 1.3E-06 46.3 6.5 67 135-202 20-89 (112)
238 KOG2915 tRNA(1-methyladenosine 94.8 0.17 3.7E-06 50.2 9.3 133 140-319 77-213 (314)
239 PF05958 tRNA_U5-meth_tr: tRNA 94.7 0.072 1.6E-06 54.2 6.7 53 155-211 184-236 (352)
240 PF06859 Bin3: Bicoid-interact 94.7 0.013 2.8E-07 50.4 1.1 77 279-356 1-91 (110)
241 PF04816 DUF633: Family of unk 94.6 0.77 1.7E-05 43.5 12.9 122 175-357 1-124 (205)
242 COG0144 Sun tRNA and rRNA cyto 94.6 0.42 9.1E-06 48.8 11.8 41 170-210 155-199 (355)
243 COG0116 Predicted N6-adenine-s 94.4 0.37 8E-06 49.8 11.0 103 172-315 192-343 (381)
244 COG0293 FtsJ 23S rRNA methylas 94.2 0.41 8.9E-06 45.5 10.0 119 171-356 45-182 (205)
245 PF05430 Methyltransf_30: S-ad 94.1 0.11 2.3E-06 45.6 5.5 74 260-356 33-110 (124)
246 COG1889 NOP1 Fibrillarin-like 94.0 0.33 7.2E-06 46.4 8.9 70 137-217 50-121 (231)
247 TIGR01444 fkbM_fam methyltrans 94.0 0.093 2E-06 45.2 4.9 37 174-210 1-39 (143)
248 PRK11524 putative methyltransf 93.9 0.44 9.6E-06 46.8 10.1 54 260-314 9-78 (284)
249 PRK09424 pntA NAD(P) transhydr 93.8 0.35 7.6E-06 51.8 9.8 116 171-316 164-285 (509)
250 COG1189 Predicted rRNA methyla 93.8 0.92 2E-05 44.2 11.7 151 155-356 66-223 (245)
251 KOG0822 Protein kinase inhibit 93.7 0.2 4.4E-06 53.7 7.5 116 155-313 351-475 (649)
252 KOG2730 Methylase [General fun 93.4 0.07 1.5E-06 51.5 3.4 40 171-210 94-133 (263)
253 KOG1331 Predicted methyltransf 93.1 0.12 2.6E-06 51.4 4.5 111 146-313 26-140 (293)
254 cd08283 FDH_like_1 Glutathione 93.1 0.45 9.8E-06 48.2 8.9 40 171-210 184-226 (386)
255 KOG1709 Guanidinoacetate methy 92.9 0.95 2.1E-05 43.9 10.1 115 155-314 89-204 (271)
256 KOG4058 Uncharacterized conser 92.8 0.11 2.4E-06 47.5 3.5 41 171-211 72-113 (199)
257 COG4798 Predicted methyltransf 92.6 0.23 5E-06 47.2 5.5 77 278-360 129-208 (238)
258 COG0270 Dcm Site-specific DNA 92.3 1.7 3.6E-05 43.8 11.6 152 171-384 2-168 (328)
259 TIGR00675 dcm DNA-methyltransf 92.1 2.4 5.3E-05 42.4 12.4 36 175-210 1-37 (315)
260 COG4262 Predicted spermidine s 91.9 0.99 2.2E-05 46.8 9.4 109 171-314 289-405 (508)
261 cd00401 AdoHcyase S-adenosyl-L 91.6 1.2 2.6E-05 46.6 10.0 37 171-207 201-239 (413)
262 cd08232 idonate-5-DH L-idonate 91.6 0.97 2.1E-05 44.2 8.9 37 171-207 165-204 (339)
263 cd08254 hydroxyacyl_CoA_DH 6-h 91.5 0.78 1.7E-05 44.4 8.0 38 171-208 165-204 (338)
264 PRK09880 L-idonate 5-dehydroge 91.1 0.91 2E-05 45.0 8.2 40 171-210 169-211 (343)
265 PF13578 Methyltransf_24: Meth 90.8 0.15 3.3E-06 41.9 2.0 94 176-313 1-102 (106)
266 TIGR00006 S-adenosyl-methyltra 90.2 4.9 0.00011 40.5 12.5 55 156-213 8-64 (305)
267 PRK01747 mnmC bifunctional tRN 90.2 1 2.2E-05 49.4 8.2 71 259-355 148-225 (662)
268 cd05188 MDR Medium chain reduc 90.1 1.3 2.9E-05 40.9 7.9 37 171-207 134-172 (271)
269 KOG2671 Putative RNA methylase 89.3 0.77 1.7E-05 47.1 5.9 53 153-207 192-244 (421)
270 KOG2872 Uroporphyrinogen decar 89.0 4.1 8.9E-05 41.0 10.6 75 135-210 210-289 (359)
271 TIGR00518 alaDH alanine dehydr 88.8 0.89 1.9E-05 46.6 6.2 36 171-206 166-203 (370)
272 PF07091 FmrO: Ribosomal RNA m 88.4 1.5 3.2E-05 43.1 7.0 83 125-214 66-150 (251)
273 PTZ00357 methyltransferase; Pr 88.1 2.6 5.5E-05 47.0 9.2 105 173-308 702-823 (1072)
274 KOG1562 Spermidine synthase [A 87.8 2.2 4.8E-05 43.0 7.9 114 170-320 120-240 (337)
275 PRK07417 arogenate dehydrogena 87.7 1.8 3.9E-05 42.2 7.3 34 174-207 2-37 (279)
276 PF01555 N6_N4_Mtase: DNA meth 87.6 1.5 3.4E-05 39.8 6.4 50 156-209 180-229 (231)
277 KOG3201 Uncharacterized conser 87.2 1.1 2.5E-05 41.6 5.1 63 277-356 101-165 (201)
278 PF04672 Methyltransf_19: S-ad 87.0 5.3 0.00011 39.6 10.0 138 173-355 70-234 (267)
279 cd08261 Zn_ADH7 Alcohol dehydr 86.9 2.6 5.6E-05 41.2 7.9 37 171-207 159-197 (337)
280 cd08237 ribitol-5-phosphate_DH 86.9 2.8 6E-05 41.7 8.2 37 171-207 163-203 (341)
281 TIGR02822 adh_fam_2 zinc-bindi 86.8 3.8 8.2E-05 40.6 9.1 37 171-207 165-203 (329)
282 cd08245 CAD Cinnamyl alcohol d 86.4 4 8.7E-05 39.6 8.9 37 171-207 162-200 (330)
283 cd05278 FDH_like Formaldehyde 86.3 2.5 5.4E-05 41.3 7.5 37 171-207 167-206 (347)
284 cd08230 glucose_DH Glucose deh 85.8 4.5 9.6E-05 40.2 9.1 31 171-201 172-204 (355)
285 PLN03154 putative allyl alcoho 85.7 2.7 5.9E-05 42.0 7.5 37 171-207 158-197 (348)
286 TIGR03451 mycoS_dep_FDH mycoth 85.6 2.3 5E-05 42.3 7.0 39 171-209 176-217 (358)
287 COG5459 Predicted rRNA methyla 85.6 2.7 5.8E-05 43.5 7.2 23 293-315 202-224 (484)
288 PLN02494 adenosylhomocysteinas 85.3 2.6 5.7E-05 44.9 7.4 35 171-205 253-289 (477)
289 PRK10458 DNA cytosine methylas 85.2 57 0.0012 34.9 17.9 53 158-210 71-127 (467)
290 PF02826 2-Hacid_dh_C: D-isome 84.4 2.4 5.3E-05 38.6 6.0 34 171-206 35-72 (178)
291 cd08294 leukotriene_B4_DH_like 84.0 2.3 5E-05 41.1 6.0 36 171-206 143-181 (329)
292 cd08295 double_bond_reductase_ 83.6 3.6 7.9E-05 40.4 7.2 37 170-206 150-189 (338)
293 TIGR00561 pntA NAD(P) transhyd 83.5 4.1 8.8E-05 43.9 8.0 116 171-315 163-283 (511)
294 cd08234 threonine_DH_like L-th 83.4 5.7 0.00012 38.5 8.5 37 171-207 159-198 (334)
295 PRK12480 D-lactate dehydrogena 83.4 4.4 9.6E-05 40.9 7.8 33 171-203 145-179 (330)
296 cd08285 NADP_ADH NADP(H)-depen 83.0 3.7 8E-05 40.5 7.0 38 171-208 166-206 (351)
297 TIGR01202 bchC 2-desacetyl-2-h 83.0 4.5 9.8E-05 39.6 7.6 36 171-206 144-182 (308)
298 PF01189 Nol1_Nop2_Fmu: NOL1/N 83.0 5.9 0.00013 39.1 8.4 39 171-209 85-126 (283)
299 PRK11559 garR tartronate semia 82.7 11 0.00023 36.8 10.1 33 174-206 4-38 (296)
300 cd08255 2-desacetyl-2-hydroxye 82.7 7.8 0.00017 36.5 8.9 37 171-207 97-136 (277)
301 COG4627 Uncharacterized protei 82.7 0.61 1.3E-05 43.0 1.2 79 275-353 43-134 (185)
302 TIGR00027 mthyl_TIGR00027 meth 82.6 19 0.00042 35.1 11.7 146 172-355 82-248 (260)
303 KOG2187 tRNA uracil-5-methyltr 82.5 1.2 2.7E-05 47.6 3.6 39 172-210 384-422 (534)
304 cd08293 PTGR2 Prostaglandin re 82.4 3.7 8E-05 40.2 6.8 34 173-206 156-193 (345)
305 PF03446 NAD_binding_2: NAD bi 82.3 5.6 0.00012 35.6 7.3 60 280-356 58-119 (163)
306 PTZ00075 Adenosylhomocysteinas 82.2 6.3 0.00014 42.1 8.7 35 171-205 253-289 (476)
307 PF03141 Methyltransf_29: Puta 81.6 2 4.4E-05 45.9 4.8 63 276-356 424-490 (506)
308 cd01080 NAD_bind_m-THF_DH_Cycl 81.2 3 6.5E-05 38.2 5.3 45 156-203 31-78 (168)
309 cd08286 FDH_like_ADH2 formalde 81.2 5.3 0.00012 39.1 7.4 34 278-317 234-267 (345)
310 cd05285 sorbitol_DH Sorbitol d 80.9 9.6 0.00021 37.4 9.1 37 171-207 162-201 (343)
311 PRK13699 putative methylase; P 80.5 5.7 0.00012 38.0 7.1 40 171-210 163-202 (227)
312 TIGR00692 tdh L-threonine 3-de 80.1 7.7 0.00017 38.1 8.1 34 278-317 229-262 (340)
313 PF00107 ADH_zinc_N: Zinc-bind 80.0 1.3 2.9E-05 37.1 2.4 89 181-317 1-90 (130)
314 KOG1501 Arginine N-methyltrans 80.0 3 6.4E-05 44.3 5.2 44 171-214 66-110 (636)
315 cd08236 sugar_DH NAD(P)-depend 79.9 7.6 0.00016 37.9 8.0 36 171-206 159-197 (343)
316 PRK11064 wecC UDP-N-acetyl-D-m 79.9 11 0.00023 39.3 9.4 35 173-207 4-40 (415)
317 COG0604 Qor NADPH:quinone redu 79.5 10 0.00022 38.2 8.8 35 171-205 142-179 (326)
318 PF04989 CmcI: Cephalosporin h 79.4 35 0.00076 32.6 11.9 150 151-354 22-187 (206)
319 cd08281 liver_ADH_like1 Zinc-d 79.2 5.3 0.00012 40.0 6.8 39 171-209 191-232 (371)
320 TIGR02825 B4_12hDH leukotriene 79.0 7.3 0.00016 38.0 7.5 36 171-206 138-176 (325)
321 PF03269 DUF268: Caenorhabditi 79.0 1.8 3.9E-05 40.1 3.0 51 262-315 48-110 (177)
322 PF01861 DUF43: Protein of unk 78.8 55 0.0012 32.1 13.2 131 171-354 44-175 (243)
323 PLN02712 arogenate dehydrogena 78.7 11 0.00023 41.9 9.4 34 171-204 51-86 (667)
324 KOG2651 rRNA adenine N-6-methy 78.6 6.7 0.00014 41.0 7.2 43 171-213 153-196 (476)
325 PRK15469 ghrA bifunctional gly 78.1 4 8.6E-05 41.0 5.4 33 171-203 135-169 (312)
326 TIGR00872 gnd_rel 6-phosphoglu 76.8 32 0.0007 33.9 11.4 33 174-206 2-36 (298)
327 COG1233 Phytoene dehydrogenase 76.7 2.8 6.2E-05 44.3 4.1 29 172-200 3-33 (487)
328 cd08263 Zn_ADH10 Alcohol dehyd 76.5 6.2 0.00013 39.3 6.3 36 171-206 187-225 (367)
329 cd08233 butanediol_DH_like (2R 76.4 7.8 0.00017 38.2 7.0 37 171-207 172-211 (351)
330 cd08239 THR_DH_like L-threonin 76.4 10 0.00022 37.1 7.7 37 171-207 163-202 (339)
331 TIGR03366 HpnZ_proposed putati 76.1 7.9 0.00017 37.2 6.7 38 171-208 120-160 (280)
332 PF02005 TRM: N2,N2-dimethylgu 76.1 7 0.00015 40.4 6.7 98 171-313 49-151 (377)
333 TIGR00936 ahcY adenosylhomocys 75.6 13 0.00027 39.0 8.4 35 171-205 194-230 (406)
334 PRK05476 S-adenosyl-L-homocyst 75.3 10 0.00022 40.0 7.6 36 171-206 211-248 (425)
335 PF01795 Methyltransf_5: MraW 75.1 12 0.00025 37.9 7.8 40 171-210 20-61 (310)
336 PRK06436 glycerate dehydrogena 74.9 6.4 0.00014 39.4 5.9 32 171-202 121-154 (303)
337 cd08235 iditol_2_DH_like L-idi 74.7 11 0.00024 36.7 7.5 36 171-206 165-203 (343)
338 COG3897 Predicted methyltransf 74.2 15 0.00032 35.2 7.7 38 171-208 79-117 (218)
339 PRK12475 thiamine/molybdopteri 74.1 3.7 8E-05 41.7 4.0 33 171-203 23-58 (338)
340 PF02086 MethyltransfD12: D12 73.9 5.2 0.00011 37.8 4.8 55 156-213 8-62 (260)
341 PF01494 FAD_binding_3: FAD bi 73.7 3.1 6.7E-05 40.1 3.2 30 174-203 3-34 (356)
342 PTZ00354 alcohol dehydrogenase 73.6 12 0.00026 35.9 7.3 37 171-207 140-179 (334)
343 KOG1201 Hydroxysteroid 17-beta 73.4 6.3 0.00014 39.7 5.3 52 155-206 20-75 (300)
344 PRK11524 putative methyltransf 73.3 11 0.00024 36.9 7.1 54 156-213 197-250 (284)
345 cd08278 benzyl_alcohol_DH Benz 73.1 11 0.00025 37.6 7.2 39 171-209 186-227 (365)
346 PRK15057 UDP-glucose 6-dehydro 72.9 14 0.00031 38.2 8.0 33 174-207 2-36 (388)
347 PRK07502 cyclohexadienyl dehyd 72.8 16 0.00035 35.9 8.1 34 173-206 7-44 (307)
348 PF11312 DUF3115: Protein of u 72.8 11 0.00024 38.3 6.9 146 149-315 54-241 (315)
349 KOG3115 Methyltransferase-like 72.8 1.8 4E-05 41.6 1.4 41 171-214 60-102 (249)
350 TIGR02733 desat_CrtD C-3',4' d 72.7 3.4 7.3E-05 43.3 3.4 30 173-202 2-33 (492)
351 PRK11199 tyrA bifunctional cho 72.7 23 0.0005 36.3 9.5 78 124-203 44-132 (374)
352 KOG2920 Predicted methyltransf 72.1 3.7 8.1E-05 40.9 3.4 52 155-206 100-152 (282)
353 TIGR02356 adenyl_thiF thiazole 71.9 4.3 9.4E-05 37.9 3.7 33 171-203 20-55 (202)
354 cd08274 MDR9 Medium chain dehy 71.8 22 0.00047 34.7 8.7 33 171-203 177-212 (350)
355 PRK07688 thiamine/molybdopteri 71.4 4.8 0.0001 40.9 4.1 33 171-203 23-58 (339)
356 TIGR01505 tartro_sem_red 2-hyd 71.1 27 0.00058 34.0 9.2 33 174-206 1-35 (291)
357 PRK12939 short chain dehydroge 71.1 20 0.00043 33.0 7.9 36 171-206 6-44 (250)
358 PRK10083 putative oxidoreducta 70.7 19 0.0004 35.1 8.0 37 171-207 160-200 (339)
359 cd08242 MDR_like Medium chain 70.7 22 0.00048 34.3 8.4 39 171-209 155-195 (319)
360 TIGR01470 cysG_Nterm siroheme 70.5 25 0.00053 33.1 8.4 31 171-201 8-40 (205)
361 PRK10309 galactitol-1-phosphat 70.1 14 0.0003 36.4 7.0 38 171-208 160-200 (347)
362 PF01555 N6_N4_Mtase: DNA meth 70.0 13 0.00029 33.6 6.4 73 295-384 35-112 (231)
363 PRK07233 hypothetical protein; 69.5 3.9 8.5E-05 41.2 3.0 29 174-202 1-31 (434)
364 KOG1596 Fibrillarin and relate 69.2 16 0.00035 36.2 6.9 34 170-203 155-191 (317)
365 PLN02586 probable cinnamyl alc 68.9 22 0.00047 35.7 8.2 35 171-205 183-219 (360)
366 KOG2539 Mitochondrial/chloropl 68.8 14 0.00031 39.4 6.9 61 152-212 181-245 (491)
367 PRK07574 formate dehydrogenase 68.6 14 0.00031 38.3 6.9 33 171-203 191-225 (385)
368 cd08279 Zn_ADH_class_III Class 68.6 15 0.00033 36.5 7.0 37 171-207 182-221 (363)
369 PLN02256 arogenate dehydrogena 68.5 29 0.00062 34.7 8.8 33 171-203 35-69 (304)
370 cd05283 CAD1 Cinnamyl alcohol 68.4 23 0.00049 34.8 8.1 37 171-207 169-207 (337)
371 cd08289 MDR_yhfp_like Yhfp put 68.4 25 0.00054 33.8 8.2 36 171-206 146-184 (326)
372 PRK06567 putative bifunctional 68.4 4.9 0.00011 46.5 3.7 31 171-201 382-414 (1028)
373 PRK13243 glyoxylate reductase; 68.2 13 0.00028 37.5 6.4 33 171-203 149-183 (333)
374 PHA01634 hypothetical protein 68.1 8.4 0.00018 34.7 4.3 37 171-207 28-65 (156)
375 PLN03209 translocon at the inn 67.9 22 0.00048 38.9 8.4 36 171-206 79-117 (576)
376 cd08266 Zn_ADH_like1 Alcohol d 67.6 20 0.00044 34.1 7.4 36 171-206 166-204 (342)
377 PRK15461 NADH-dependent gamma- 67.4 23 0.00049 34.9 7.8 33 174-206 3-37 (296)
378 PRK08507 prephenate dehydrogen 67.1 29 0.00062 33.6 8.4 33 174-206 2-38 (275)
379 PRK09599 6-phosphogluconate de 66.8 78 0.0017 31.1 11.5 33 174-206 2-36 (301)
380 PRK08655 prephenate dehydrogen 66.3 21 0.00046 37.4 7.8 33 174-206 2-37 (437)
381 PRK05396 tdh L-threonine 3-deh 66.1 28 0.0006 34.1 8.2 37 171-207 163-202 (341)
382 PRK06475 salicylate hydroxylas 65.8 5.6 0.00012 40.4 3.3 30 173-202 3-34 (400)
383 cd08270 MDR4 Medium chain dehy 65.5 37 0.0008 32.2 8.7 36 171-206 132-170 (305)
384 cd08231 MDR_TM0436_like Hypoth 65.4 42 0.0009 33.2 9.3 36 171-206 177-215 (361)
385 cd08267 MDR1 Medium chain dehy 65.0 36 0.00079 32.2 8.5 32 171-202 143-177 (319)
386 COG2384 Predicted SAM-dependen 65.0 1.4E+02 0.0031 29.0 13.7 124 172-356 17-142 (226)
387 cd08260 Zn_ADH6 Alcohol dehydr 64.8 26 0.00056 34.3 7.6 36 171-206 165-202 (345)
388 COG0275 Predicted S-adenosylme 64.6 60 0.0013 33.0 10.1 55 156-213 11-68 (314)
389 PRK12490 6-phosphogluconate de 64.5 88 0.0019 30.8 11.4 33 174-206 2-36 (299)
390 TIGR02734 crtI_fam phytoene de 64.5 4.7 0.0001 42.3 2.5 28 175-202 1-30 (502)
391 PRK07236 hypothetical protein; 64.1 6.7 0.00015 39.5 3.5 33 171-203 5-39 (386)
392 cd05286 QOR2 Quinone oxidoredu 64.1 44 0.00094 31.3 8.8 37 171-207 136-175 (320)
393 cd08243 quinone_oxidoreductase 64.1 31 0.00068 32.6 7.9 36 171-206 142-180 (320)
394 COG1867 TRM1 N2,N2-dimethylgua 63.6 26 0.00056 36.4 7.5 95 172-313 53-151 (380)
395 PLN02985 squalene monooxygenas 63.4 7.5 0.00016 41.6 3.8 67 132-202 7-75 (514)
396 PLN03139 formate dehydrogenase 63.3 22 0.00047 37.0 7.0 36 279-316 255-291 (386)
397 PRK08306 dipicolinate synthase 63.3 58 0.0013 32.3 9.8 35 171-205 151-187 (296)
398 cd05289 MDR_like_2 alcohol deh 63.1 42 0.00091 31.4 8.5 33 171-203 144-179 (309)
399 PF08729 HUN: HPC2 and ubinucl 62.8 6.6 0.00014 29.6 2.4 31 288-319 24-54 (55)
400 COG0287 TyrA Prephenate dehydr 62.7 29 0.00062 34.5 7.5 37 172-208 3-43 (279)
401 PRK08324 short chain dehydroge 62.4 45 0.00097 36.9 9.7 36 171-206 421-459 (681)
402 TIGR01988 Ubi-OHases Ubiquinon 62.2 6.5 0.00014 38.9 2.9 29 175-203 2-32 (385)
403 COG0286 HsdM Type I restrictio 61.9 15 0.00032 39.3 5.6 80 128-210 144-231 (489)
404 PRK08163 salicylate hydroxylas 61.8 8.1 0.00018 38.8 3.5 32 172-203 4-37 (396)
405 PF01266 DAO: FAD dependent ox 61.7 7.9 0.00017 37.3 3.3 30 174-203 1-32 (358)
406 PLN02927 antheraxanthin epoxid 61.6 7.6 0.00016 43.2 3.5 33 170-202 79-113 (668)
407 PF06962 rRNA_methylase: Putat 61.2 47 0.001 29.9 7.9 114 195-356 1-124 (140)
408 TIGR02032 GG-red-SF geranylger 61.1 8.1 0.00017 36.4 3.2 30 174-203 2-33 (295)
409 cd05281 TDH Threonine dehydrog 60.8 38 0.00083 33.2 8.0 34 278-317 230-263 (341)
410 COG3349 Uncharacterized conser 60.8 7.9 0.00017 41.5 3.3 28 173-200 1-30 (485)
411 cd08292 ETR_like_2 2-enoyl thi 60.4 20 0.00044 34.3 5.9 36 171-206 139-177 (324)
412 TIGR02730 carot_isom carotene 60.1 7.4 0.00016 40.9 3.0 29 174-202 2-32 (493)
413 PRK06249 2-dehydropantoate 2-r 60.1 55 0.0012 32.3 9.1 33 171-203 4-38 (313)
414 COG1063 Tdh Threonine dehydrog 60.0 35 0.00076 34.5 7.8 40 172-211 169-211 (350)
415 cd08265 Zn_ADH3 Alcohol dehydr 60.0 34 0.00073 34.5 7.7 35 278-317 274-308 (384)
416 PRK07364 2-octaprenyl-6-methox 59.9 8 0.00017 39.1 3.1 34 171-204 17-52 (415)
417 PF13450 NAD_binding_8: NAD(P) 59.9 8.4 0.00018 29.7 2.6 27 177-203 1-29 (68)
418 PLN02827 Alcohol dehydrogenase 59.1 41 0.00089 34.0 8.1 38 171-208 193-233 (378)
419 PRK06753 hypothetical protein; 58.3 9.1 0.0002 38.1 3.2 30 174-203 2-33 (373)
420 PF01210 NAD_Gly3P_dh_N: NAD-d 58.2 46 0.00099 29.5 7.4 100 174-315 1-102 (157)
421 TIGR03026 NDP-sugDHase nucleot 58.2 72 0.0016 32.9 9.8 33 174-206 2-36 (411)
422 PRK07538 hypothetical protein; 57.8 9.2 0.0002 39.0 3.2 30 174-203 2-33 (413)
423 PRK09126 hypothetical protein; 57.6 8.6 0.00019 38.5 2.9 31 173-203 4-36 (392)
424 PRK07588 hypothetical protein; 57.3 9.6 0.00021 38.4 3.2 29 174-202 2-32 (391)
425 KOG0024 Sorbitol dehydrogenase 57.2 30 0.00065 35.5 6.6 42 170-211 168-212 (354)
426 KOG2614 Kynurenine 3-monooxyge 57.0 10 0.00022 39.8 3.3 33 172-204 2-36 (420)
427 PF11599 AviRa: RRNA methyltra 56.9 27 0.00059 34.0 5.9 45 171-215 51-99 (246)
428 TIGR02360 pbenz_hydroxyl 4-hyd 56.7 10 0.00022 38.5 3.3 31 173-203 3-35 (390)
429 PRK05868 hypothetical protein; 56.3 10 0.00022 38.4 3.2 30 173-202 2-33 (372)
430 cd08297 CAD3 Cinnamyl alcohol 56.1 45 0.00098 32.4 7.6 36 171-206 165-203 (341)
431 PF02737 3HCDH_N: 3-hydroxyacy 55.8 19 0.00041 33.0 4.6 37 174-210 1-39 (180)
432 cd08296 CAD_like Cinnamyl alco 55.7 43 0.00093 32.7 7.4 37 171-207 163-201 (333)
433 KOG1209 1-Acyl dihydroxyaceton 55.1 14 0.00031 36.1 3.7 34 171-204 6-43 (289)
434 PRK12771 putative glutamate sy 55.0 15 0.00033 39.4 4.4 33 170-202 135-169 (564)
435 cd00757 ThiF_MoeB_HesA_family 54.9 13 0.00029 35.1 3.6 33 171-203 20-55 (228)
436 PF02636 Methyltransf_28: Puta 54.9 16 0.00034 35.1 4.1 51 156-210 6-67 (252)
437 PRK08849 2-octaprenyl-3-methyl 54.9 10 0.00022 38.2 3.0 30 173-202 4-35 (384)
438 PF05971 Methyltransf_10: Prot 54.9 39 0.00085 34.1 7.0 43 172-214 103-147 (299)
439 PRK06847 hypothetical protein; 54.7 13 0.00027 37.0 3.5 32 172-203 4-37 (375)
440 PRK07045 putative monooxygenas 54.7 11 0.00024 37.9 3.1 33 171-203 4-38 (388)
441 PF03721 UDPG_MGDP_dh_N: UDP-g 54.5 27 0.00059 32.2 5.5 34 174-207 2-37 (185)
442 PLN02688 pyrroline-5-carboxyla 54.4 85 0.0018 29.9 9.1 34 279-315 61-94 (266)
443 PRK05714 2-octaprenyl-3-methyl 53.9 11 0.00024 38.1 3.0 30 174-203 4-35 (405)
444 PLN02712 arogenate dehydrogena 53.8 52 0.0011 36.6 8.4 33 171-203 368-402 (667)
445 PRK07231 fabG 3-ketoacyl-(acyl 53.7 19 0.0004 33.2 4.3 35 171-205 4-41 (251)
446 cd01483 E1_enzyme_family Super 53.6 14 0.00031 32.0 3.2 30 174-203 1-33 (143)
447 TIGR02354 thiF_fam2 thiamine b 53.6 19 0.00041 33.7 4.3 32 171-202 20-54 (200)
448 TIGR03219 salicylate_mono sali 53.5 12 0.00026 38.2 3.2 30 174-203 2-34 (414)
449 PRK05690 molybdopterin biosynt 53.4 17 0.00037 35.0 4.1 33 171-203 31-66 (245)
450 PRK05562 precorrin-2 dehydroge 53.4 78 0.0017 30.5 8.5 46 161-206 14-63 (223)
451 PRK06126 hypothetical protein; 53.3 12 0.00027 39.7 3.4 31 171-201 6-38 (545)
452 PRK08243 4-hydroxybenzoate 3-m 53.2 13 0.00027 37.7 3.3 31 173-203 3-35 (392)
453 cd08269 Zn_ADH9 Alcohol dehydr 52.9 53 0.0011 31.2 7.4 35 278-318 197-231 (312)
454 PRK08773 2-octaprenyl-3-methyl 52.8 13 0.00029 37.4 3.4 32 171-202 5-38 (392)
455 cd01487 E1_ThiF_like E1_ThiF_l 52.7 14 0.0003 33.8 3.1 30 174-203 1-33 (174)
456 PRK12831 putative oxidoreducta 52.7 15 0.00033 38.6 3.8 32 171-202 139-172 (464)
457 PRK07208 hypothetical protein; 52.6 13 0.00028 38.6 3.3 31 172-202 4-36 (479)
458 PRK12769 putative oxidoreducta 52.4 14 0.00031 40.5 3.7 32 171-202 326-359 (654)
459 COG0677 WecC UDP-N-acetyl-D-ma 52.4 48 0.001 35.0 7.3 35 173-207 10-46 (436)
460 PRK08013 oxidoreductase; Provi 52.3 13 0.00028 37.8 3.2 31 173-203 4-36 (400)
461 PRK12409 D-amino acid dehydrog 52.2 13 0.00029 37.6 3.3 29 174-202 3-33 (410)
462 PRK06184 hypothetical protein; 52.0 14 0.0003 38.9 3.5 30 173-202 4-35 (502)
463 PRK12778 putative bifunctional 51.8 18 0.00038 40.5 4.4 32 170-201 429-462 (752)
464 cd05288 PGDH Prostaglandin deh 51.6 50 0.0011 31.7 7.1 36 171-206 145-183 (329)
465 TIGR02824 quinone_pig3 putativ 51.6 57 0.0012 30.7 7.3 36 171-206 139-177 (325)
466 COG0686 Ald Alanine dehydrogen 51.4 54 0.0012 33.7 7.3 99 171-315 167-267 (371)
467 cd08298 CAD2 Cinnamyl alcohol 51.4 82 0.0018 30.4 8.5 34 278-317 224-257 (329)
468 PRK08850 2-octaprenyl-6-methox 51.2 13 0.00029 37.6 3.1 30 173-202 5-36 (405)
469 cd08250 Mgc45594_like Mgc45594 50.9 40 0.00087 32.5 6.3 36 171-206 139-177 (329)
470 TIGR01984 UbiH 2-polyprenyl-6- 50.8 12 0.00027 37.2 2.8 30 175-204 2-34 (382)
471 PRK06849 hypothetical protein; 50.7 21 0.00045 36.3 4.4 36 171-206 3-41 (389)
472 cd05276 p53_inducible_oxidored 50.6 53 0.0012 30.7 6.9 36 171-206 139-177 (323)
473 cd05282 ETR_like 2-enoyl thioe 50.3 47 0.001 31.7 6.6 35 171-205 138-175 (323)
474 TIGR01316 gltA glutamate synth 50.3 17 0.00037 37.9 3.8 32 171-202 132-165 (449)
475 PLN02487 zeta-carotene desatur 50.0 26 0.00056 38.3 5.2 32 172-203 75-108 (569)
476 PRK00421 murC UDP-N-acetylmura 49.9 19 0.0004 37.7 4.0 33 171-203 6-41 (461)
477 PRK13581 D-3-phosphoglycerate 49.7 35 0.00076 36.7 6.1 32 171-202 139-172 (526)
478 KOG2793 Putative N2,N2-dimethy 49.6 1.1E+02 0.0024 30.1 9.0 36 171-206 86-122 (248)
479 PRK10754 quinone oxidoreductas 49.5 62 0.0013 31.2 7.3 36 171-206 140-178 (327)
480 PRK11883 protoporphyrinogen ox 49.5 16 0.00035 37.1 3.4 28 174-201 2-33 (451)
481 PF12242 Eno-Rase_NADH_b: NAD( 49.2 30 0.00066 28.2 4.2 31 171-201 38-72 (78)
482 KOG1122 tRNA and rRNA cytosine 49.2 1E+02 0.0023 32.7 9.1 38 169-206 239-279 (460)
483 PRK12779 putative bifunctional 49.1 16 0.00034 42.3 3.6 32 171-202 305-338 (944)
484 PF00890 FAD_binding_2: FAD bi 49.0 15 0.00032 37.3 3.0 30 175-204 2-33 (417)
485 PRK12814 putative NADPH-depend 49.0 20 0.00043 39.5 4.2 33 171-203 192-226 (652)
486 PLN02514 cinnamyl-alcohol dehy 48.9 75 0.0016 31.7 8.0 36 171-206 180-217 (357)
487 PRK05732 2-octaprenyl-6-methox 48.8 16 0.00034 36.5 3.2 30 172-201 3-37 (395)
488 TIGR03315 Se_ygfK putative sel 48.7 16 0.00036 42.5 3.6 33 171-203 536-570 (1012)
489 PRK07494 2-octaprenyl-6-methox 48.6 16 0.00034 36.7 3.1 31 172-202 7-39 (388)
490 PRK12809 putative oxidoreducta 48.5 17 0.00037 39.9 3.6 33 171-203 309-343 (639)
491 PF07992 Pyr_redox_2: Pyridine 48.4 18 0.0004 32.2 3.2 30 174-203 1-32 (201)
492 PRK12767 carbamoyl phosphate s 48.1 23 0.00049 34.7 4.1 31 173-203 2-35 (326)
493 cd05280 MDR_yhdh_yhfp Yhdh and 47.4 85 0.0018 30.0 7.9 35 172-206 147-184 (325)
494 cd05291 HicDH_like L-2-hydroxy 47.3 84 0.0018 31.1 8.0 33 174-206 2-38 (306)
495 TIGR01292 TRX_reduct thioredox 47.3 18 0.00038 34.3 3.1 29 174-202 2-32 (300)
496 cd05279 Zn_ADH1 Liver alcohol 47.3 75 0.0016 31.7 7.7 37 171-207 183-222 (365)
497 cd08268 MDR2 Medium chain dehy 46.7 70 0.0015 30.2 7.1 36 171-206 144-182 (328)
498 KOG3924 Putative protein methy 46.7 77 0.0017 33.4 7.7 143 133-318 160-310 (419)
499 PRK04176 ribulose-1,5-biphosph 46.6 26 0.00056 34.0 4.2 32 172-203 25-58 (257)
500 TIGR01377 soxA_mon sarcosine o 46.4 18 0.00039 36.0 3.1 28 174-201 2-31 (380)
No 1
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=100.00 E-value=9.4e-83 Score=616.52 Aligned_cols=266 Identities=55% Similarity=0.990 Sum_probs=246.9
Q ss_pred CCCCCCcCCCCCCcchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHH
Q 016155 112 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEIS 190 (394)
Q Consensus 112 ~~~~~~~~~~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~-~~~~~~~~VLvpGCGlGRLa~eLA 190 (394)
+|..++ ..|++||+++|+|++||||+||+.||+++|+||+++|++++|. ...+.+.+|||||||+||||+|||
T Consensus 2 ~~~~~~------~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 2 EWVHPS------PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred CcccCc------hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHh
Confidence 455555 7999999999999999999999999999999999999999995 334578999999999999999999
Q ss_pred HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC-CCCCCceeEEeccccc
Q 016155 191 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVE 269 (394)
Q Consensus 191 ~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDf~e 269 (394)
++||.|+|||+|++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. .....+|+|++|||++
T Consensus 76 ~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e 155 (270)
T PF07942_consen 76 KLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE 155 (270)
T ss_pred hccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999976 4567789999999999
Q ss_pred ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC
Q 016155 270 VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG 349 (394)
Q Consensus 270 ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G 349 (394)
+|..+...++||+||||||||||+||++||++|+++|||||+|||+|||+|||++.. .+++.++|||+|||+++++++|
T Consensus 156 ~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~-~~~~~sveLs~eEi~~l~~~~G 234 (270)
T PF07942_consen 156 VYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS-IPNEMSVELSLEEIKELIEKLG 234 (270)
T ss_pred ecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-CCCCcccCCCHHHHHHHHHHCC
Confidence 998544568999999999999999999999999999999999999999999999741 2345689999999999999999
Q ss_pred CEEEEEee-ccccCCCCcccccccccceEEEEEEEc
Q 016155 350 FEFEKEKT-IETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 350 F~ii~e~~-i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
|++++++. +.++|++|++||+|+.|+|.||||||+
T Consensus 235 F~~~~~~~~i~~~Y~~d~~Sm~q~~Y~~~~fvark~ 270 (270)
T PF07942_consen 235 FEIEKEESSILSGYTTDPESMMQTYYGCVFFVARKP 270 (270)
T ss_pred CEEEEEEEeeecCCCCCHHHHhhCccccEEEEEEcC
Confidence 99999875 999999999999999999999999996
No 2
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-82 Score=611.65 Aligned_cols=295 Identities=57% Similarity=0.965 Sum_probs=271.3
Q ss_pred cccchHHHhhhhcccccccCCCCCCCCCCCCCC-cCCCCCCcchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhh
Q 016155 85 LENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 163 (394)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~ 163 (394)
|+-|..++..++.... +.-.+|..-+ .+.++.+.+|.||.++|+|++||||+||+.||+++|.||+++|..+
T Consensus 69 I~~N~~v~r~Ia~~~~-------~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~l 141 (369)
T KOG2798|consen 69 IEENSRVIRAIAEECP-------FEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSL 141 (369)
T ss_pred HHhhhHHHHHHHhhCc-------cccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhh
Confidence 7778888888777221 2333455555 6777888999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 164 FPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 164 ~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
||... .+.+.+||+||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++||+|
T Consensus 142 fp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlr 221 (369)
T KOG2798|consen 142 FPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLR 221 (369)
T ss_pred CCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccc
Confidence 99654 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 243 PVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 243 ~v~iPDv~p~-~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
+++|||+.|. ..+..+.|+|++|||+++|+.+...+.||+||||||||||+|+++||++|+++|||||+|||+|||+||
T Consensus 222 pi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH 301 (369)
T KOG2798|consen 222 PISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH 301 (369)
T ss_pred cccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence 9999999997 556677899999999999986666678999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 386 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~ 386 (394)
|+++.|..+++++|||.|||.++++..||++++++.|+++|+.||+||+++.|.|.|||+||+..
T Consensus 302 F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~~ 366 (369)
T KOG2798|consen 302 FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPCA 366 (369)
T ss_pred ccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEecccc
Confidence 99987767788999999999999999999999999999999999999999999999999999864
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=3.9e-15 Score=143.88 Aligned_cols=194 Identities=18% Similarity=0.118 Sum_probs=122.2
Q ss_pred CCCCcchHHHHHHHHHHhhcCcccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--
Q 016155 121 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-- 193 (394)
Q Consensus 121 ~~~~~d~~kv~~~L~q~~RDWS~eg~~ER~~----~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-- 193 (394)
+....|.-++...++.+...++.....-.+. ....+-..+.+.... .++.+|||+|||+|+++..|+++ |
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 4445777666666665555555433321111 011122222222221 25679999999999999999986 4
Q ss_pred CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC
Q 016155 194 FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 273 (394)
Q Consensus 194 f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~ 273 (394)
..|+|+|+|..||..++-..+.... ....++.++.+|+.++.
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~------------------------------------~~~~~i~~~~~d~~~lp-- 140 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAK------------------------------------SCYKNIEWIEGDATDLP-- 140 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhh------------------------------------ccCCCeEEEEcccccCC--
Confidence 3899999999999765411100000 00124788999988763
Q ss_pred CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cC-------cchhhhhc---------cCCCCC----
Q 016155 274 PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GP-------LLYHFADL---------YGQEDE---- 331 (394)
Q Consensus 274 ~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GP-------Llyh~~~~---------~g~~~~---- 331 (394)
..+++||+|++.|-+...+|...++++++++|||||+++-+ .+ .++.+... .+..+.
T Consensus 141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 35689999998887887788999999999999999999742 21 11111100 010000
Q ss_pred ---ccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 332 ---MSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 332 ---~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..-.++.+|+.++++++||+.++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124699999999999999988754
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.2e-15 Score=146.34 Aligned_cols=154 Identities=22% Similarity=0.255 Sum_probs=113.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+-+.+.+..... ++.+|||+|||||.+|..||+.. ..|+|+|+|..||..++--+ .
T Consensus 39 Wr~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~---~---------------- 96 (238)
T COG2226 39 WRRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL---K---------------- 96 (238)
T ss_pred HHHHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh---h----------------
Confidence 555555544322 67899999999999999999996 79999999999997766211 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
+.. ..+++|++||+.++ |+++++||+|...|=|....++..+|++++|+|||||+++
T Consensus 97 --------------~~~------~~~i~fv~~dAe~L---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 --------------KKG------VQNVEFVVGDAENL---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred --------------ccC------ccceEEEEechhhC---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 000 11289999999987 4678999999999989999999999999999999999998
Q ss_pred Ee--c-----Cc--chh---hhhc---cCC----CC--------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 314 NL--G-----PL--LYH---FADL---YGQ----ED--------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 314 N~--G-----PL--lyh---~~~~---~g~----~~--------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+ . ++ .|+ +... .|. .. -..-.++.+++.++++++||+.+.
T Consensus 154 vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 154 VLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 53 1 11 122 1100 010 01 012246999999999999999887
No 5
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=3.8e-16 Score=136.21 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=102.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+.+.|.++.+.. .+..+|||+|||.|.++..|++.|+.++|+|+|..|+.. .+.
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~-------------------- 62 (161)
T PF13489_consen 9 YADLLERLLPRL--KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNV-------------------- 62 (161)
T ss_dssp HHHHHHHHHTCT--TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTS--------------------
T ss_pred HHHHHHHHhccc--CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhh--------------------
Confidence 444444444321 267899999999999999999999999999999999843 000
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
. ....... +.. ...+.||+|+++..|...+|+..+|+.|+++|||||+++-.
T Consensus 63 ---------~--------------~~~~~~~--~~~---~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 63 ---------V--------------FDNFDAQ--DPP---FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---------E--------------EEEEECH--THH---CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---------h--------------hhhhhhh--hhh---ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 0 0111111 111 13589999999998888889999999999999999999975
Q ss_pred cCcchh-----hhhc-cCCC-CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 316 GPLLYH-----FADL-YGQE-DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 316 GPLlyh-----~~~~-~g~~-~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.|..+. +... .... ......++.++++.+++++||+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 115 DPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp EEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred EcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 554321 1100 0000 01234689999999999999999875
No 6
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=9.5e-16 Score=142.06 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4579999999999999999999999999999999997666332110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.++.+..+|+.++.. .++||+|++.+.+. ...++..+++.++++|||||++|-+..+ ...+. ..
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~~ 143 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-PC 143 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-CC
Confidence 124566677765421 36799999775432 2346789999999999999997542211 11110 00
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.......++.+||.++++ ||+++.-
T Consensus 144 ~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 144 TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 111246789999999996 9999884
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.67 E-value=7.1e-15 Score=146.71 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=106.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..++...+. .
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~--------------------------~-------- 176 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADM--------------------------D-------- 176 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------------------c--------
Confidence 456999999999999999999999999999999999776621100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--cc--hhhh---
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--LL--YHFA--- 323 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP--Ll--yh~~--- 323 (394)
....++.++.+|+.++. ...++||+|++...|....+...++++++++|||||.+|-.-+ -. |...
T Consensus 177 ----~~~~~i~~~~~dae~l~---~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 177 ----PVTSTIEYLCTTAEKLA---DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred ----CcccceeEEecCHHHhh---hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 00124788999987763 2357899999998888888889999999999999999984211 10 1000
Q ss_pred hc--cC-CCC-Cc--cccCCHHHHHHHHHhCCCEEEEEee
Q 016155 324 DL--YG-QED-EM--SIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 324 ~~--~g-~~~-~~--~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.. .. .++ .. .-.++.+|+.++++++||++++...
T Consensus 250 ~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 250 AEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred HHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 00 00 011 01 1247999999999999999998763
No 8
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.67 E-value=3.9e-15 Score=140.84 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=114.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
..+.+.+++.+..+. ++.+|||||||.||.+..||++|+.|+|+|+|..++..+. ... ...
T Consensus 22 p~~~L~~~~~~~~~~----~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~~-----~l~-------- 82 (218)
T PRK13255 22 VNPLLQKYWPALALP----AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AEN-----GLT-------- 82 (218)
T ss_pred CCHHHHHHHHhhCCC----CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HHc-----CCC--------
Confidence 445566666543221 4579999999999999999999999999999999885321 110 000
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccCC
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDt-a~ni~~yl~~I~~~LKpG 309 (394)
.+..+..........++++.++|+.++.. ...+.||+|+-. +|... .+...+|++.|.++||||
T Consensus 83 ------------~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 83 ------------PQTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred ------------ccccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 00000000000112458999999998742 223689999944 23332 334678999999999999
Q ss_pred cEEEEecCcchhhh-hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc-ccccccccceEEEEEEE
Q 016155 310 GVWINLGPLLYHFA-DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP-RSMMQNRYFTAFWTMRK 383 (394)
Q Consensus 310 G~wIN~GPLlyh~~-~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~-~sm~~~~Y~~~f~va~K 383 (394)
|+++-+ .+.+. +..+++ ...++.+||++++.. +|+++..+.....+..+. .......+...+|..+|
T Consensus 149 G~~~l~---~~~~~~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (218)
T PRK13255 149 CRGLLV---TLDYPQEELAGP---PFSVSDEEVEALYAG-CFEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLER 217 (218)
T ss_pred CeEEEE---EEEeCCccCCCC---CCCCCHHHHHHHhcC-CceEEEeeeccccccCchhhhcCcchhheEEEEEEe
Confidence 875421 11121 112333 357899999999953 488887553333332222 22233444455555544
No 9
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.66 E-value=1.8e-15 Score=144.83 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..++-.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK---------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4579999999999999999999999999999999997666322110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCcch------
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 320 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~----GPLly------ 320 (394)
....++.++.+|+.++.. ...++||+|++...+....+...++++++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011247788899877632 23578999998876666667789999999999999999732 11111
Q ss_pred --hhhhc-cC----CCCCccccCCHHHHHHHHHhCCCEEEEEeecc--ccCCCCc
Q 016155 321 --HFADL-YG----QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNP 366 (394)
Q Consensus 321 --h~~~~-~g----~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~--~~Y~~d~ 366 (394)
++... .. ........++.+++.++++++||+++....+. ..|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~ 218 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNK 218 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcc
Confidence 11100 00 00001235799999999999999999866443 4565553
No 10
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.66 E-value=1.3e-15 Score=144.16 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=101.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+.+.+. +. ..+.+|||||||.|..+..||.+||+|+|+|+|...+..+. .... +.|=
T Consensus 24 p~L~~~~~~l-~~---~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~-------~~~~------ 84 (218)
T PF05724_consen 24 PALVEYLDSL-AL---KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENN-------LEPT------ 84 (218)
T ss_dssp HHHHHHHHHH-TT---STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCT-------TEEE------
T ss_pred HHHHHHHHhc-CC---CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhc-------cCCC------
Confidence 4455555552 21 15669999999999999999999999999999998875431 1000 0000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccC-ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlD-ta~ni~~yl~~I~~~LKpGG~ 311 (394)
+..+.........+++++.|||+++.. ...++||+|.-+ ||+- ...-..+|.+.+.++|||||.
T Consensus 85 ------------~~~~~~~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 85 ------------VTSVGGFKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp ------------CTTCTTEEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred ------------cccccceeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 000000000112459999999999754 234689999955 3333 234477999999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++-+. +.|..... .++ .+.++.+||++++. .+|+++...
T Consensus 151 ~lLi~-l~~~~~~~-~GP---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 151 GLLIT-LEYPQGEM-EGP---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp EEEEE-EES-CSCS-SSS---S----HHHHHHHHT-TTEEEEEEE
T ss_pred EEEEE-EEcCCcCC-CCc---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 54321 33432222 123 47789999999997 799998854
No 11
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=5.7e-15 Score=139.28 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||||||.||.+..||++|+.|+|+|+|..++..+. +.. ... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~~----~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AEN----GLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HHc----CCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999986431 100 000 000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh-hHHHHHHHHHHhccCCcEEEEecCcchhhhh-ccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH-NIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta~-ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~-~~g 327 (394)
+.....++++.++||.++.. ...+.||+|+-+- |+...+ ....|++.|.++|||||+++-+ .|.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~---~~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI---TLDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE---EEEcCCCCCC
Confidence 00112358999999998642 1236799998653 333333 3567999999999999986532 111111 112
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++ ...++.+||++++.. +|+++...
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 367999999999964 67777644
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=7.6e-16 Score=147.11 Aligned_cols=144 Identities=24% Similarity=0.264 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..++.-+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 5779999999999999999986 3 58999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--c----Cc---
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G----PL--- 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--G----PL--- 318 (394)
...++.+++||+.++. +.+++||+|++.|-|...+|..+.+++++|+|||||+++.+ + |+
T Consensus 96 --------~~~~i~~v~~da~~lp---~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLP---FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp --------T--SEEEEE-BTTB-----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred --------CCCCeeEEEcCHHHhc---CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 0114889999998874 45799999999898888888999999999999999999842 1 11
Q ss_pred chhhhhc-----cC----CC-C-----Cccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 LYHFADL-----YG----QE-D-----EMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 lyh~~~~-----~g----~~-~-----~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|.+.-. .| +. . ..++ ..+.+|+.++++++||+.++-+
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp HHHH---------------------------------------------------
T ss_pred eeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111100 01 00 0 0122 2488999999999999987643
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=4.7e-15 Score=137.19 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++..... . .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~---~-----------------------~~------ 77 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAR---E-----------------------NL------ 77 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHH---h-----------------------CC------
Confidence 456999999999999999999999999999999999765532210 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
++....+|+.... . .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 78 --------~v~~~~~d~~~~~---~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 78 --------PLRTDAYDINAAA---L-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred --------CceeEeccchhcc---c-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 0334555654321 1 35799999875332 2356789999999999999985431 1111111000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.....++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 112346799999999995 69998843
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=7.7e-15 Score=146.25 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=100.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..|.. |+|+|.|..|+..++.+.+...
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-------------------------------- 169 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-------------------------------- 169 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--------------------------------
Confidence 5679999999999999999999974 9999999999864443211100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--------cchh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--------LLYH 321 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP--------Llyh 321 (394)
...++.+..+|+.++. . .+.||+|++.-.|....+...+|+.++++|||||.+|--.. .++.
T Consensus 170 ------~~~~i~~~~~d~e~lp---~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 170 ------NDQRAHLLPLGIEQLP---A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred ------CCCCeEEEeCCHHHCC---C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 0123678888887763 2 57899999876666666788999999999999999984210 0110
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.+..-+...+..|.+++..+++++||++++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0001000111223599999999999999998855
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=1.8e-14 Score=137.15 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHH
Q 016155 126 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 126 d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~M 205 (394)
|..+++......+..|..... ....+.+.|.+.++.. +..+|||+|||+|.++..|+.+|..|+|+|+|..|
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~ 76 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM 76 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence 345566555555555553222 2234666666666532 46789999999999999999999999999999999
Q ss_pred HHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE
Q 016155 206 MICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 285 (394)
Q Consensus 206 L~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT 285 (394)
+..++... ....++.+|+.++. ..+++||+|++
T Consensus 77 l~~a~~~~--------------------------------------------~~~~~~~~d~~~~~---~~~~~fD~V~s 109 (251)
T PRK10258 77 LAQARQKD--------------------------------------------AADHYLAGDIESLP---LATATFDLAWS 109 (251)
T ss_pred HHHHHhhC--------------------------------------------CCCCEEEcCcccCc---CCCCcEEEEEE
Confidence 86544110 00245778876642 34578999999
Q ss_pred ecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcc-hhhhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 286 CFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLL-YHFADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 286 ~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GPLl-yh~~~~---~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+.+....++...|.+++++|||||+++-. ++-. ..+... .+..+...-.++.+++..++...||+...
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 887777778889999999999999999853 3211 111110 11111112247899999999988887544
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=139.12 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 5679999999999999999998 7899999999999865430
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc-----chh--
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL-----lyh-- 321 (394)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-.-|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788877632 478999999987776677889999999999999999742111 110
Q ss_pred --------hhhccCCCC--CccccCCHHHHHHHHHhCCCEEEE
Q 016155 322 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 322 --------~~~~~g~~~--~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|.......+ ......+.+++.++++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
No 17
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=1.5e-14 Score=137.80 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+.+.+++.+.-+. ++.+|||||||.|+.+..||.+||.|+|+|+|...+..+. . +..+.|=+..
T Consensus 30 p~L~~~~~~l~~~----~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~--- 93 (226)
T PRK13256 30 EFLVKHFSKLNIN----DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH--- 93 (226)
T ss_pred HHHHHHHHhcCCC----CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec---
Confidence 4455666554321 4579999999999999999999999999999998875432 1 0111110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhh-HHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHN-IVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~n-i~~yl~~I~~~LKpGG~ 311 (394)
.+ ......+.++.+.+|||+++...+...+.||+|+-. +|+--.++ ..+|++.+.++|+|||.
T Consensus 94 -------~~--------~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 94 -------GN--------DYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred -------cc--------ccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 00 000011335899999999974211224689998855 34333333 66899999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
++-+ .+.+....+++ .+.++.+||++++.. +|++..
T Consensus 159 llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 159 ILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 9863 23333322334 367899999999965 455554
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=1.8e-14 Score=144.26 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999997665332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhh---hcc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFA---DLY 326 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~---~~~ 326 (394)
....++.+..+|+.++. +.+++||+|++..-+...++..+++++++++|||||+++-.....-... ...
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01124788999988753 3468999999987777777888999999999999999985321100000 000
Q ss_pred -----------CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 327 -----------GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 327 -----------g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...-...-..+.+++.++++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 000000012489999999999999998854
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=1.4e-13 Score=128.98 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=101.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-.+... .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~-- 94 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----------------------------G-- 94 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----------------------------C--
Confidence 5679999999999999999976 358999999999997655322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchhhhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYHFAD 324 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PLlyh~~~ 324 (394)
..++.++.+|+.++. ...++||+|++.+.+...++..+.++++.++|||||++|-.. |-...+..
T Consensus 95 ---------~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 162 (231)
T TIGR02752 95 ---------LHNVELVHGNAMELP---FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ 162 (231)
T ss_pred ---------CCceEEEEechhcCC---CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHH
Confidence 013678889987752 235789999998888877888899999999999999998432 11100000
Q ss_pred ---------------ccCCC--------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 ---------------LYGQE--------DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ---------------~~g~~--------~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+.. +...-.++.+|++++++++||++++.+
T Consensus 163 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 163 LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 00000 000113588999999999999988755
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=1e-14 Score=120.91 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=78.1
Q ss_pred CCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|+++.+|++ .|..|+|+|+|..|+..++-....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------------------------- 47 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---------------------------------- 47 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH----------------------------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh----------------------------------
Confidence 56999999999999999999 899999999999999776633210
Q ss_pred CCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEec-ccC---ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCF-FID---TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf-~ely~~~~~~~~fD~VvT~f-FlD---ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|+ .+.. ..+.||+|+... .++ ..++..++++.+++.|||||++|-
T Consensus 48 ----~~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 48 ----EGLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ----TTTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 01124589999999 3322 246799999887 222 125678899999999999999983
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.58 E-value=2.6e-14 Score=142.28 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998644332211000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-----cCc---chh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPL---LYH 321 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-----GPL---lyh 321 (394)
..++.+..+++.++.. .+.||+|++...|....++.++|++++++|||||.+|-- |+. +..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0124556667666532 258999999876666678889999999999999999842 211 000
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. +.+..-.....-.|.++|+.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000011234599999999999999999744
No 22
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=4e-14 Score=138.36 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=94.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-.... . .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~---~-----------------------~-------- 166 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK---E-----------------------N-------- 166 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---c-----------------------C--------
Confidence 45899999999999999999999999999999999765522210 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
-++.+..+|+.+.. ..++||+|++.+++. ..+++..+++.++++|||||+++-+.+..- +....+
T Consensus 167 ------l~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~---~~~~~~ 233 (287)
T PRK12335 167 ------LNIRTGLYDINSAS----IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT---EDYPCP 233 (287)
T ss_pred ------CceEEEEechhccc----ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCCCC
Confidence 02456667765532 147899999775332 235688999999999999999664322210 111111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+.....++.+||++++. +|++++-
T Consensus 234 ~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 234 MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 11245689999999994 5999883
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=1.1e-14 Score=115.76 Aligned_cols=93 Identities=27% Similarity=0.355 Sum_probs=73.6
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCC
Q 016155 176 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 254 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~ 254 (394)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8999999999999966552211
Q ss_pred CCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 255 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 255 ~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.++..+|+.++ |+.+++||+|++...+...++...++++|+|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhC---ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 11245788898886 3457999999988766555889999999999999999987
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=1.7e-13 Score=130.76 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999996554110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcch---h---h
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 322 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLly---h---~ 322 (394)
.++.+..+|+.++.. .++||+|++.+.++...+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 124667788876532 36899999998777777888999999999999999986333211 0 0
Q ss_pred ---------hhccCCCC-CccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 323 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 323 ---------~~~~g~~~-~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
...+.... ......+.+++.+++.+.||.+....
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 01234688899999999999875533
No 25
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=9.2e-14 Score=132.74 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=115.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+.+|||+|||-|-|+.-||++|+.|||+|+|..|+..|+ .++.+. .+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak---~ha~e~-----------------------gv----- 106 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK---LHALES-----------------------GV----- 106 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH---Hhhhhc-----------------------cc-----
Confidence 37889999999999999999999999999999999997766 111110 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE----ecCcchhhh--
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN----LGPLLYHFA-- 323 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN----~GPLlyh~~-- 323 (394)
++.+.++...++-. ..++||+|+++-.|...+|+..+++.+.++|||||+.+- -.+.-|-..
T Consensus 107 ---------~i~y~~~~~edl~~---~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~ 174 (243)
T COG2227 107 ---------NIDYRQATVEDLAS---AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAII 174 (243)
T ss_pred ---------cccchhhhHHHHHh---cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHH
Confidence 13455555556543 248999999999999999999999999999999999973 222212111
Q ss_pred -------hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec-cccCCCCcccccccccceEEEEEEEc
Q 016155 324 -------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 324 -------~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i-~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
..+.+.-...-.+-.+|+...+...||++...... ..++ .+... ....+...|+++.++
T Consensus 175 ~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~-~~~~~-l~~~~~vNy~~~~~~ 241 (243)
T COG2227 175 GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPL-TNSWK-LSNDVSVNYMVHAQR 241 (243)
T ss_pred HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccc-cceEE-ecCCccceEEEEeec
Confidence 00111111123468899999999999998875522 1111 11111 233667777766554
No 26
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.53 E-value=1.5e-13 Score=128.09 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.++||+|||.||.|..||++||.|+|+|.|...|...+.+.+. . .+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l------ 77 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GL------ 77 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cc------
Confidence 567999999999999999999999999999999998654433211 1 11
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
.++....|+.+... .+.||+|++. .||+. +.+...++.|...|||||+.+-.... . .++++
T Consensus 78 --------~i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~~--~-~~d~p 141 (192)
T PF03848_consen 78 --------DIRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTFM--E-TPDYP 141 (192)
T ss_dssp --------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEEB-----SSS-
T ss_pred --------eeEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEec--c-cCCCC
Confidence 15667778766432 3689999863 46774 46788999999999999997742111 0 11111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+....+.+...||+... .||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y--~dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYY--ADWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHT--TTSEEEE
T ss_pred CCCCCCcccCHHHHHHHh--CCCeEEE
Confidence 122235567889999998 4899988
No 27
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=2.9e-13 Score=131.04 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=98.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||.. |..|+|+|+|..|+..++-...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 5679999999999999999875 7899999999999976552110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC-ChhhHHHHHHHHHHhccCCcEEEEecCcchh---hhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD-ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh---~~~ 324 (394)
...++.+..+|+.+.. ...++||+|++.. ++. ...+...+|++++++|||||+++-..+..-. +..
T Consensus 97 ------~~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred ------cCCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 0123678889987642 3468999999853 223 2247889999999999999999964332100 000
Q ss_pred ccC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g--~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00000113589999999999999998754
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.51 E-value=5.5e-13 Score=126.34 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|.++..|+++ +..++|+|+|..|+..++..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999997766332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLL----- 319 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GPLl----- 319 (394)
....++.++.+|+.++.. ..+|+|++.+.+.. ..+...++++++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236889999987632 35898887764432 2457799999999999999999754321
Q ss_pred -----hh----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 320 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 320 -----yh----~~~~~g~~~-----------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.. |....|..+ .....+|.+|++++++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 110001100 012357999999999999998654
No 29
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.50 E-value=3.6e-13 Score=125.55 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=101.5
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999986655222100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 331 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~ 331 (394)
....++++..+|+.+.. . .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~~---~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDP---F-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccCC---C-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 01124678888875531 1 3689999988766666778899999999999999999654421001110 00111
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 332 MSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 332 ~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
....++.+++.+++.+.||++++...+
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 134578999999999999999986543
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=6.2e-13 Score=127.21 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=96.9
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~----~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
++.+|||+|||+|.++..|++ .+..|+|+|+|..|+..++-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 457899999999999998887 3679999999999997766332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEec-------
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLG------- 316 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wIN~G------- 316 (394)
....+++++.+|+.++.. +.+|+|++.+ |++. .....++++|+++|||||.++...
T Consensus 106 --------~~~~~v~~~~~d~~~~~~-----~~~D~vv~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI-----ENASMVVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC-----CCCCEEehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 011247889999887532 3589988765 4542 346789999999999999999642
Q ss_pred ---Ccchh----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 016155 317 ---PLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 317 ---PLlyh----~~~~~g~~~-----------~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
++++. +....|-.. .....+|.++..++|+++||+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 22211 110111110 112346999999999999998653
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.47 E-value=1.5e-12 Score=129.68 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-...... .. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~--------------------------~~--~-- 193 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEAL--------------------------AA--L-- 193 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcc--------------------------cc--c--
Confidence 46799999999999999999999999999999999976663221000 00 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhh--hc-
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFA--DL- 325 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~--~~- 325 (394)
....++.|..+|+.++ .++||+|++...+... ..+...++.+.+ |++||++|.+.|-.+.+. ..
T Consensus 194 ----~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 194 ----PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred ----ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 0012367788886543 3789999877543222 224456666664 578999998877544322 11
Q ss_pred ---cCCCC--CccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 326 ---YGQED--EMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 326 ---~g~~~--~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
+.++. ...+..+.+|++++++++||+++..+.+.
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence 11111 11234589999999999999998866433
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.47 E-value=1.1e-12 Score=131.84 Aligned_cols=141 Identities=19% Similarity=0.074 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|||+|||+|.++..+++. +..|+|+|+|..|+..++-...
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------------------------------- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------------------------- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------------------------------
Confidence 4579999999999999999875 5789999999999865541100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh--hhcc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 326 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~--~~~~ 326 (394)
..++.++.+|+.++. ...++||+|+++..+...++....|++++++|||||+++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCC---CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 012567888987753 345789999998777767777889999999999999998666542111 0000
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 016155 327 GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 358 (394)
Q Consensus 327 g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i 358 (394)
. +......+.+|+.++++++||+.++.+.+
T Consensus 228 ~--~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 228 A--DVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred h--hhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 0 00011358999999999999999886643
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.46 E-value=1.9e-12 Score=126.50 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=99.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+-+.+.- +++.+|||+|||-|.++..+|++ |..|+|+.+|......++-.. .+.
T Consensus 50 k~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~---~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERI---REA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHH---HCS---------------
T ss_pred HHHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHH---Hhc---------------
Confidence 44555544432 37889999999999999999999 999999999999986554221 111
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~w 312 (394)
...+.+.+..+|+.++. .+||.||+.--+.+. +|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889988853 489999999655554 78999999999999999999
Q ss_pred EE--ec-C-cchhhhhccC-------CCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 313 IN--LG-P-LLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 313 IN--~G-P-Llyh~~~~~g-------~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+. +. + -.++.+.... .-| .+.-.+.+++...+++.||+++.......-|
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~~~hY 222 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENLGRHY 222 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-HHHH
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEcCcCH
Confidence 73 21 1 1122110000 001 1234589999999999999999876544333
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.45 E-value=3.2e-12 Score=119.48 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=107.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
..++++|... ..+..+|||+|||+|.++..|+..+..|+|+|+|..|+..++-.+...
T Consensus 43 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 100 (219)
T TIGR02021 43 RKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----------------- 100 (219)
T ss_pred HHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 3466666531 125679999999999999999999999999999999997765222100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~ 311 (394)
....++.+..+|+.++ .++||+|++.+.+. ...++...++.+.+++|+|++
T Consensus 101 ---------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 101 ---------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred ---------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0012367888887664 16899999875432 345678899999999997766
Q ss_pred EEEecCcchhh------hhccCC--CCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 312 WINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 312 wIN~GPLlyh~------~~~~g~--~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+. +.|-.+.+ ...... .......++.+|++++++++||+++..+....+|
T Consensus 154 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 154 FT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 65 43321111 010111 1111335799999999999999999877544443
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=6.2e-13 Score=117.36 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=82.8
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|+++..|+. . +..++|+|+|..|+..++..+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 578999999999999999994 4 679999999999997776433210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.. .++.+.++|+.++... .. +.||+|++...+....+....++.+.++|||||++|-.
T Consensus 52 -------~~-~ni~~~~~d~~~l~~~-~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 52 -------GL-DNIEFIQGDIEDLPQE-LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp -------TS-TTEEEEESBTTCGCGC-SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------cc-cccceEEeehhccccc-cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 01 1489999999995421 12 79999999987788888889999999999999999853
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.45 E-value=1.9e-12 Score=124.70 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=100.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..+++. |. .|+|+|+|..|+..++...... .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g---- 126 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G---- 126 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5779999999999998888765 54 6999999999997766322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC-----cchhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 322 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP-----Llyh~ 322 (394)
..++.+..+|+.++. ..++.||+|++...+...++...++++++++|||||+++-.+. +....
T Consensus 127 ---------~~~v~~~~~d~~~l~---~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 127 ---------YTNVEFRLGEIEALP---VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ---------CCCEEEEEcchhhCC---CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 013678889987753 2357899999888777777888999999999999999986432 11000
Q ss_pred hh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~---~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.. ..++. ..-.++.+++.+++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012468899999999999998764
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=4.1e-12 Score=131.88 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=99.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++.-. .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~---~-------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA---I-------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh---h--------------------------------
Confidence 5679999999999999999986 789999999999997654110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 323 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl------yh~~ 323 (394)
....++.+..+|+.+.. ...++||+|++..-+...++...+++.++++|||||+++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~---~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKT---YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCC---CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 00123678889987642 235789999987666666678899999999999999998532210 0000
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 324 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 324 ~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.... .. .....+.+++.++++++||+++..
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeee
Confidence 0000 00 012458999999999999999864
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=1.6e-12 Score=123.28 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
++..+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..++- +
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-------~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-------A--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-------c---------------
Confidence 5555655433 3569999999999999999999 6899999999999965430 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.+|+.++ |+.+++||+|++.|.|...+|+...+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~l---p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEAL---PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhC---CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 01245777765 34578999999999888888899999999999999655554
Q ss_pred ec
Q 016155 315 LG 316 (394)
Q Consensus 315 ~G 316 (394)
++
T Consensus 146 ~~ 147 (226)
T PRK05785 146 MG 147 (226)
T ss_pred eC
Confidence 43
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=1.7e-11 Score=113.97 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++.++ ..++|+|+|..|+..++-.+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~---------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD---L---------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc---c----------------------------
Confidence 45799999999999999999987 7899999999998655421110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchh---
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 321 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---PLlyh--- 321 (394)
....++.+..+|+.++. ...+.||+|+..+.+....++...++.+.++|||||++|.+. |....
T Consensus 100 -------~~~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 00123678888987753 235789999988878777788999999999999999998532 11100
Q ss_pred ----hh--------hccCCCCC--------ccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 322 ----FA--------DLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 322 ----~~--------~~~g~~~~--------~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+. ...+.... .....+.+++.++++++||++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeee
Confidence 00 00000000 0113588999999999999998765
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=1.7e-11 Score=115.23 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=106.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
-++.+....+.. ++.+||++|||+|.++..+++.|..++|+|+|..|+..++......
T Consensus 36 ~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------- 93 (233)
T PRK05134 36 RLNYIREHAGGL---FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------- 93 (233)
T ss_pred HHHHHHHhccCC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc-------------------
Confidence 345666555322 5678999999999999999999999999999999986554211100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
...+.+..+|+.++.. ...+.||+|+..+.+....+....++.+.++|+|||+++-.
T Consensus 94 ---------------------~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 94 ---------------------GLKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ---------------------CCceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 0014556667665431 12478999998887777778889999999999999998843
Q ss_pred cCc--chhhh-------hcc----CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 316 GPL--LYHFA-------DLY----GQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 316 GPL--lyh~~-------~~~----g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+- ...+. ... .........++.+++.+++++.||+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 151 TLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 221 00000 000 000111224689999999999999999754
No 41
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.40 E-value=2e-11 Score=113.49 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+... .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--------------------------~------- 91 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKD--------------------------P------- 91 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 4679999999999999999999999999999999986655211100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh---
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 323 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL----lyh~~--- 323 (394)
..++.+..+|+.++.. ...+.||+|++...+....+...+++.+.++|+|||+++-..+. .+...
T Consensus 92 ------~~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 92 ------LLKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred ------CCceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 0025677788776532 12478999998877777778889999999999999998743221 01000
Q ss_pred h--ccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 324 D--LYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 324 ~--~~g~----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
. ..+. .......++.+++.+++++.||++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0 0000 0001124588999999999999998865
No 42
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=8.1e-12 Score=123.19 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=87.6
Q ss_pred HHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 016155 129 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 203 (394)
Q Consensus 129 kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~ 203 (394)
+=.....++++ +|-. -+.|.+ .+....+.+.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 44455677776 4442 333432 23334444444443 4568999999999999999888 68999999999
Q ss_pred HHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC-CCccE
Q 016155 204 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 282 (394)
Q Consensus 204 ~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~-~~fD~ 282 (394)
.||..+.--+.. .+|. .++..+.|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~~-----------------------------~~p~---------~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALAA-----------------------------DYPQ---------LEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHHh-----------------------------hCCC---------ceEEEEEEcccchhhhhcccccCCeE
Confidence 999665421110 0111 12677899998743211111 11233
Q ss_pred EEE---ecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 283 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 283 VvT---~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
++. .+..-..++...+|+.|+++|||||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 332 2333345667899999999999999998
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.38 E-value=2.6e-11 Score=111.54 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..+++.+. .++|+|.|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999854431110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC---cc----h
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 320 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP---Ll----y 320 (394)
...++.+..+|+.++. ...+.||+|++.+.+....++..+++.+.++|||||+++-++. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 0113677888887753 2357899999888787777888999999999999999985332 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------cccCCHHHHHHHHHhCCCEEEEEe
Q 016155 321 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 321 ----h~~~~---~g~---~~~~---------~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..... .+. .... .-.++.++++.+++++||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988765
No 44
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=4.5e-12 Score=117.46 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=95.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------------------------------- 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------------------------------- 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----------------------------------
Confidence 457899999999999999999985 4699999999985443100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|+.+.. ...++||+|++.+.+....+...+++.+.++|||||+++-..|..-.+......
T Consensus 79 --------~~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 79 --------SENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred --------CCCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 012567888887653 235789999998877777778899999999999999999644332111110000
Q ss_pred -CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 -EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 -~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.....-..+.+++.+++.+. |+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235778888888876 77654
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.35 E-value=3.4e-11 Score=109.34 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..++.+|..|+|+|+|..|+..++..+.. +
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~------------------------------ 64 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N------------------------------ 64 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 456899999999999999999999999999999999766532210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-cc--CC------------------hhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DT------------------AHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-Fl--Dt------------------a~ni~~yl~~I~~~LKpG 309 (394)
..++.+..+|+.+.. .++||+|++.- |+ +. ..-+.++++.+.++||||
T Consensus 65 ------~~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 65 ------NVGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred ------CCceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 012566778876642 25899999772 22 11 111567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.++-+.+ ..-...++..++++.||..+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99884211 11246888999999999988754
No 46
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=3.4e-11 Score=111.20 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++.+. -.++|+|+|..|+..++-...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--------------------------------- 65 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--------------------------------- 65 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---------------------------------
Confidence 56799999999999999999874 589999999999876552100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 323 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL----lyh~~ 323 (394)
....++.+..+|+.++. ...++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 66 -------~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 66 -------GLGPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred -------CCCCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 00123677888876542 23578999999888888788899999999999999999864431 11100
Q ss_pred hc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 324 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 324 ~~---------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+. .... ..-..+..++.++++++||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999998764
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=3.1e-11 Score=111.04 Aligned_cols=122 Identities=12% Similarity=0.145 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||..+ ..|+|+|.|..|+..++...+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~-------------------------------- 89 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL-------------------------------- 89 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--------------------------------
Confidence 36799999999999999998775 57999999999997655322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.. .++.++.+|+.++. ..++||+|++.. ..++.++++.++++|||||+++-. +.
T Consensus 90 ------~~-~~i~~i~~d~~~~~----~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~-----~~------ 143 (181)
T TIGR00138 90 ------GL-NNVEIVNGRAEDFQ----HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAY-----KG------ 143 (181)
T ss_pred ------CC-CCeEEEecchhhcc----ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE-----cC------
Confidence 00 13788999988752 247899998765 245678899999999999999842 11
Q ss_pred CCCccccCCHHHHHHHHHh---CCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALH---YGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~---~GF~ii~e~ 356 (394)
.-...++..+.++ .||+.++..
T Consensus 144 ------~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 144 ------KKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred ------CCcHHHHHHHHHhhhhcCceEeecc
Confidence 1134455555444 899998865
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.33 E-value=6.7e-11 Score=110.27 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=95.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
+..+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999997665322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-C-ChhhHHHHHHHHHHhccCCcEEEEecCc---chhhhhc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 325 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl-D-ta~ni~~yl~~I~~~LKpGG~wIN~GPL---lyh~~~~ 325 (394)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.++++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236788888432 24789999987544 2 34567788888888775 4555554332 1111100
Q ss_pred ---c-CC-CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 326 ---Y-GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 326 ---~-g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
. +. .......++.+++.+++++.||++.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 00 11123457999999999999999988653
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.33 E-value=1e-10 Score=106.82 Aligned_cols=123 Identities=14% Similarity=-0.020 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-..... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----------------------------~--- 79 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----------------------------G--- 79 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------C---
Confidence 46699999999999999999875 58999999999986654211100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|..... .+.||+|+..... .++.++++.++++|||||+++-..+
T Consensus 80 --------~~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 80 --------CGNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred --------CCCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 012566777754211 3579999875433 3466789999999999999974111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..-+.+++.+++++.||+.++..
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceEE
Confidence 11256788999999999876643
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.33 E-value=2.9e-11 Score=123.45 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~------ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------G------ 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------c------
Confidence 5679999999999999999986 8899999999999976552110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCc-chhhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPL-LYHFAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN--~GPL-lyh~~~ 324 (394)
.++++..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.- .+...+
T Consensus 213 --------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 213 --------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred --------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 0145667777654 268999998765543 35678999999999999999985 2211 110000
Q ss_pred ccC---CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 325 LYG---QEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 325 ~~g---~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.+- .-| ...-.+.+++..+++ .||++.....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 000 001 123458899998876 4899887543
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.33 E-value=1.6e-10 Score=107.18 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..+|+ .+..|+|+|.|..|+..++......
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-------------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-------------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--------------------------------
Confidence 367999999999999999986 3679999999999997766322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
.. .++++..+|+.++.. .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~~----~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFGQ----EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCCC----CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 127888999877532 578999997653 4577899999999999999985311
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-...++.++.+..|+.+.+.-
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeeeE
Confidence 1234567788888899988744
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.32 E-value=7.3e-12 Score=121.36 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
+.+.|.+.++. ...+|||+|||+|.++..|++. +..++|+|+|..|+..|+..
T Consensus 74 i~~~l~~~l~~----~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~------------------ 131 (272)
T PRK11088 74 VANLLAERLDE----KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR------------------ 131 (272)
T ss_pred HHHHHHHhcCC----CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh------------------
Confidence 33445555442 4568999999999999999875 24789999999999654310
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
. .++.+..+|..++ |+.+++||+|++.|. . ..+++++++|||||
T Consensus 132 ---------------~-----------~~~~~~~~d~~~l---p~~~~sfD~I~~~~~---~----~~~~e~~rvLkpgG 175 (272)
T PRK11088 132 ---------------Y-----------PQVTFCVASSHRL---PFADQSLDAIIRIYA---P----CKAEELARVVKPGG 175 (272)
T ss_pred ---------------C-----------CCCeEEEeecccC---CCcCCceeEEEEecC---C----CCHHHHHhhccCCC
Confidence 0 1256788887765 345689999998663 1 23678999999999
Q ss_pred EEEEecCcchh
Q 016155 311 VWINLGPLLYH 321 (394)
Q Consensus 311 ~wIN~GPLlyh 321 (394)
++|.+.|.-.|
T Consensus 176 ~li~~~p~~~~ 186 (272)
T PRK11088 176 IVITVTPGPRH 186 (272)
T ss_pred EEEEEeCCCcc
Confidence 99987665433
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=4.7e-13 Score=109.45 Aligned_cols=97 Identities=24% Similarity=0.231 Sum_probs=56.3
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 176 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+.. .....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~-------------------------~~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE-------------------------LGNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH-------------------------CT-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-------------------------cCCcc--------
Confidence 79999999999999999 88999999999998322211100 00000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
...+.+...|..+.. ..++||+|++...+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222222322211 1269999999988888889999999999999999986
No 54
>PRK06202 hypothetical protein; Provisional
Probab=99.30 E-value=4.2e-11 Score=113.01 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccc
Q 016155 171 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 244 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~----~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v 244 (394)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..++-.. .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~--------------------------- 109 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---R--------------------------- 109 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---c---------------------------
Confidence 567999999999999999885 35 48999999999997655110 0
Q ss_pred ccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCcc
Q 016155 245 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 319 (394)
Q Consensus 245 ~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN-~--GPLl 319 (394)
..++.+..++..++. ..+++||+|++.+.+...++ +...++++++++| |+++|+ + +++.
T Consensus 110 ------------~~~~~~~~~~~~~l~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 110 ------------RPGVTFRQAVSDELV---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred ------------cCCCeEEEEeccccc---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 001233344433332 13578999999987665544 5689999999999 777776 2 2222
Q ss_pred hhhhh---c--c-C----CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 320 YHFAD---L--Y-G----QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 320 yh~~~---~--~-g----~~~~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.... . . + .+...++ .++.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 21000 0 0 0 0111122 5799999999999 99988754
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=3.2e-11 Score=125.17 Aligned_cols=141 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998543210 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta--~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
...++.++.+|+.+.. .+...++||+|++.+.+... +.+.+.++.++++|||||+++-.... +....+...
T Consensus 81 -----~~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 0123678888886422 12346789999987654433 33779999999999999999853222 111111000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
....+...+..++.+++.+.||....
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113445788999999999998875
No 56
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=6.4e-11 Score=116.19 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.|.++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +.
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~------------- 206 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ------------- 206 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 4455555432 457999999999999999999987 799999999999776632210 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....+.+..++.... ..++||+|+++.. +..+.+++..+.++|||||++|.
T Consensus 207 ---------------------~~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 207 ---------------------VSDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ---------------------CCcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 001133444442221 2468999998765 34467899999999999999997
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|.+. -..+++++.+++. |++++..
T Consensus 258 sgi~~----------------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 258 SGILE----------------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred EeCcH----------------hHHHHHHHHHHcc-CceeeEe
Confidence 55431 2457888888775 9887643
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.29 E-value=1.1e-10 Score=107.52 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=96.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
++++.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++ +
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-------~----------------- 54 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-------A----------------- 54 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-------H-----------------
Confidence 344555554 4568999999999999999765 568899999999985432 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE-E
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI-N 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI-N 314 (394)
.++.++.+|+.+... +...++||+|++...+...+|+...++++.+++|++.+-+ |
T Consensus 55 ----------------------~~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 55 ----------------------RGVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred ----------------------cCCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 013456677654211 1235789999998877777888899999999888643222 1
Q ss_pred ecCcc--hhhh-h--c--cCC------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLL--YHFA-D--L--YGQ------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLl--yh~~-~--~--~g~------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++... +.+. . . .+. .....-..+.+++.+++++.||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 112 FGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred hhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 21100 0000 0 0 000 0001124699999999999999999865
No 58
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.29 E-value=2.1e-11 Score=117.88 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||.|||+|-|+.-||+.|..|+|+|.|..|+.+|+-- .+.. ++. .
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h--~~~d------------------------P~~----~- 138 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH--KKMD------------------------PVL----E- 138 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh--hhcC------------------------chh----c-
Confidence 46799999999999999999999999999999999888721 1000 000 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----EecCcchh-----h
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLGPLLYH-----F 322 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI----N~GPLlyh-----~ 322 (394)
....-.+++...|..++ .+.||+||+.-.+....++.++++...++|||||.+. |-+-+-|+ .
T Consensus 139 --~~~~y~l~~~~~~~E~~------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~ 210 (282)
T KOG1270|consen 139 --GAIAYRLEYEDTDVEGL------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA 210 (282)
T ss_pred --cccceeeehhhcchhhc------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence 00111355666664443 3569999999888888899999999999999999886 32212221 1
Q ss_pred hhccCCCCC----ccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 ADLYGQEDE----MSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~~~g~~~~----~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+.....-|. -.-.++++|+.+++...|+.+...
T Consensus 211 E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 211 EIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred HHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 111111110 123579999999999999987763
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=7.6e-11 Score=113.13 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=89.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..++-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555555432 5679999999999999999999986 99999999999766522110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.+ ...+.+..+ +.+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~------------~~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GV------------ELNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CC------------CceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 000111111 127999987643 33466889999999999999996
Q ss_pred ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 315 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 315 ~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|.+ .-..+++.+.+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1246789999999999998744
No 60
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.29 E-value=4.5e-11 Score=115.31 Aligned_cols=145 Identities=20% Similarity=0.248 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 242 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr 242 (394)
++.+|||+|||||-+|+-|.+. +-.|++.|+|.+||..+.. ++.+ |
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 5689999999999999999766 2579999999999976551 1110 1
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-------
Q 016155 243 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------- 315 (394)
Q Consensus 243 ~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~------- 315 (394)
+++ ......++.||..++. +.+++||+.+..|=|....++.+.+++.||+|||||+|.-+
T Consensus 154 ~l~----------~~~~~~w~~~dAE~Lp---Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDLP---FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccCC---CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 1123789999998874 56899999988898998889999999999999999999731
Q ss_pred cCcchhhhhc-------c-----CCCCC-----ccc--cCCHHHHHHHHHhCCCEEEE
Q 016155 316 GPLLYHFADL-------Y-----GQEDE-----MSI--ELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 316 GPLlyh~~~~-------~-----g~~~~-----~~i--eLS~eEl~~ll~~~GF~ii~ 354 (394)
.|+.|-+..- . |.... -+| .++.||+..+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2443322110 0 10000 012 35899999999999998875
No 61
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=1.1e-11 Score=102.19 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=68.7
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 175 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~G-----f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
|||+|||+|+.+..|++.. -.++|+|+|..||..++..... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~------------------------------ 47 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D------------------------------ 47 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T------------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c------------------------------
Confidence 7999999999999999884 7999999999999655521100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG 310 (394)
+-++.++++|+.++.. ..++||+|++.+ ..-+.+.+..+++.+.++|||||
T Consensus 48 -------~~~~~~~~~D~~~l~~---~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 -------GPKVRFVQADARDLPF---SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------TTTSEEEESCTTCHHH---HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------CCceEEEECCHhHCcc---cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 0126789999988642 357999999842 23445568899999999999998
No 62
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=7.1e-11 Score=115.93 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.++.+.+.+.-+ ++.+|||+|||-|.++..+|++ |-.|+|+++|..|+..++-.+ .+
T Consensus 60 k~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~---------------- 117 (283)
T COG2230 60 KLDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AA---------------- 117 (283)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HH----------------
Confidence 556666655433 7899999999999999999999 899999999999986555211 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~w 312 (394)
.....++++...|..++. +.||.||+.=-++ ..+|..+||+.++++|+|||++
T Consensus 118 -------------------~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 118 -------------------RGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred -------------------cCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 011234677788877753 4599999984333 3367899999999999999999
Q ss_pred EEe---cCcc-h-hhhh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 313 INL---GPLL-Y-HFAD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 313 IN~---GPLl-y-h~~~---~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
++. +|-. + .+.+ .+ .-| ...-.|..++.+...+.||.+.......
T Consensus 173 llh~I~~~~~~~~~~~~~i~~y-iFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKY-IFP-GGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred EEEEecCCCcccccchHHHHHh-CCC-CCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 962 2210 1 1110 00 001 1234589999999999999999865433
No 63
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=2.2e-10 Score=105.97 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=97.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++.++|++ +-.|+|+|.|..|+..++...+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 357999999999997665222110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
....++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||+++-.-+.
T Consensus 89 -------g~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------- 147 (198)
T PRK00377 89 -------GVLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAIL--------- 147 (198)
T ss_pred -------CCCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeec---------
Confidence 001236778888876432 12368999987542 245678999999999999999831110
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEE
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFW 379 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~-~i~~~Y~~d~~sm~~~~Y~~~f~ 379 (394)
.-+.+++..++++.||.....+ .+..++.......+... +++|.
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-npv~~ 192 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITEVIIAKGMKTKVGTAMMTR-NPIFI 192 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCcEeecC-CCEEE
Confidence 1145788889999999665544 34444433332233333 44443
No 64
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=2.9e-10 Score=102.24 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..|+.+|..|+|+|+|..|+..++..+... .++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------------------~~~-------- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----------------------NIR-------- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----------------------CCC--------
Confidence 5668999999999999999999999999999999997665322110 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------------------ChhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------------------TAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlD--------------------ta~ni~~yl~~I~~~LKpG 309 (394)
..++.++.+|+.+... .++||+|++.. |+. ....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0114567777766332 34799998652 211 1233567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 310 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 310 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|.++-+-+ -....+++.+++.+.||+++...
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98874211 01245789999999999887643
No 65
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.23 E-value=8.6e-11 Score=108.59 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=103.6
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHhhhhhccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 217 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~filn~~~ 217 (394)
|-.+..+|| |+++|.....-.. .....+|||+|||.|.+.+.||+.||. .+|+|+|...+..|.-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 666666777 7777776554110 113349999999999999999999996 5999999999977665543211
Q ss_pred cccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEE---Eecc--c--C
Q 016155 218 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV---TCFF--I--D 290 (394)
Q Consensus 218 ~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv---T~fF--l--D 290 (394)
. .+.++|-+.|+++- .+..++||+|. |.=- | |
T Consensus 116 ~--------------------------------------~n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F--------------------------------------SNEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C--------------------------------------CcceeEEEeeccCC---cccccceeEEeecCceeeeecCCC
Confidence 1 11256666665542 12346677665 2111 1 2
Q ss_pred Chh-hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 291 TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 291 ta~-ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-+. -+.-|+..+.++|+|||+|+-. +-..+.+||.+.++..||++...-
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEee
Confidence 221 1356999999999999999841 346799999999999999887643
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=2.8e-10 Score=95.17 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 3569999999999999999997 358999999999997665322110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
.++.++.+|+.+... ...++||+|++..-. ....++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 124566677554211 123689999875432 2356899999999999999984
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.21 E-value=3.3e-10 Score=106.67 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++-.+...
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------------- 82 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------------- 82 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 457999999999999999999987 8999999999997655221100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-------------------hhHHHHHHHHHHhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 308 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta-------------------~ni~~yl~~I~~~LKp 308 (394)
+.++.++.+|+.+.. ..++||+|++. |+-... ..+.++++.+.++|||
T Consensus 83 -------~~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 83 -------GVDVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred -------CCeeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 002566778887642 24789999986 332211 1245678899999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
||+++-+-+ . ....+++.+++++.||.+...
T Consensus 152 gG~l~~~~~-----~-----------~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLVQS-----E-----------LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEEEe-----c-----------ccCHHHHHHHHHHCCCCeEEE
Confidence 999983110 0 114567888888888876653
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.19 E-value=3.9e-10 Score=106.28 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=93.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
+++.+.+.++. .+.+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444432 3468999999999999999987 578999999999997665322110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------h--------------
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 292 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------a-------------- 292 (394)
. -.++.+..+|+.+.. ..++||+|+++. |+.. .
T Consensus 135 ---------~-------------~~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G-------------LDNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C-------------CCeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 013678889987743 247899999862 2210 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 293 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 293 -----~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEEE
Confidence 11235788999999999998731 10 1135789999999999877643
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.18 E-value=2.7e-10 Score=112.66 Aligned_cols=143 Identities=16% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|..++.++.+|.. |.|+|-+..-+.-.+++.+...... +
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~---------------------~------- 166 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP---------------------P------- 166 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc---------------------c-------
Confidence 6889999999999999999999985 9999999876654444432110000 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-----ecCcch--hh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-----LGPLLY--HF 322 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-----~GPLly--h~ 322 (394)
..++ .. -++..|. .+.||+|+++=.|=.-.+..+.|+.+...|||||.+|- -|+.-. --
T Consensus 167 ----------~~~l-pl--gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P 232 (315)
T PF08003_consen 167 ----------VFEL-PL--GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP 232 (315)
T ss_pred ----------EEEc-Cc--chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc
Confidence 0111 00 1112233 57899999885555566788999999999999999993 122111 01
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 323 ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 323 ~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++.+..-++..+-.|..-|+..++++||+.++.
T Consensus 233 ~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 233 EDRYAKMRNVWFIPSVAALKNWLERAGFKDVRC 265 (315)
T ss_pred CCcccCCCceEEeCCHHHHHHHHHHcCCceEEE
Confidence 111222233345569999999999999998873
No 70
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.17 E-value=1.4e-10 Score=96.97 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=77.3
Q ss_pred CeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
.+|||||||+|+++..++++| ..++|+|++...+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 99999999999998777443211
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------hhHHHHHHHHHHhccCCcEEEEe
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
....++.++.+|+.++.. +...++||+|+++- |.... ....++++.+.++|||||.++-+
T Consensus 47 ---~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 011247899999988752 13468999999883 43321 12357899999999999999853
No 71
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.17 E-value=2.4e-10 Score=113.90 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||||||+|.++.+++..|..++|+|++..|+..++..++.. .+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~----------------------------g~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY----------------------------GI---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------CC----
Confidence 5678999999999999999999999999999999997665322110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFl----D--ta-~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
.++.+..+|+.++.. ..+.||+|++. |-. . .. ....++++.++++|||||+++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~~---~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLPL---SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCCc---ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 115678899887632 35789999986 321 1 11 2246889999999999999885322
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+..++.++++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244567899999 6653
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.16 E-value=1.6e-09 Score=103.30 Aligned_cols=137 Identities=18% Similarity=0.082 Sum_probs=85.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~------------------------------ 118 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEE------------------------------ 118 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhh------------------------------
Confidence 66799999999999999999872 47999999999985322 11110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..++.++.+|..+......-.+.||+|+.. +.........++.++++|||||.++-. +.|+-.+ ...
T Consensus 119 --------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 119 --------RKNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred --------cCCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 012455677765421000112569999753 222222345689999999999999853 1221111 000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
. ..... ++..+.++++||++++...
T Consensus 186 ~---~~~~~-~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 186 D---PKEIF-KEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred C---HHHHH-HHHHHHHHHcCCeEEEEEc
Confidence 1 11223 3445889999999997653
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.16 E-value=2e-10 Score=106.96 Aligned_cols=127 Identities=20% Similarity=0.117 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-------------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-------------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------------------------------
Confidence 4678999999999999999987 457999999999997655221100
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEeccc---CChh-----hHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 249 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf-~ely~~~~~~~~fD~VvT~fFl---Dta~-----ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
. ..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-.-+
T Consensus 88 ------~-~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 88 ------G-LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred ------C-CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 0 02377889998 44321 1235789999876421 1111 145789999999999999984211
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 353 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii 353 (394)
..--.+++.+.+++.||...
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccc
Confidence 11234567788888998665
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.15 E-value=1.5e-09 Score=106.81 Aligned_cols=140 Identities=12% Similarity=0.039 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++.+++++. ..++++|+ ..|+..++..+..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------- 194 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE--------------------------------- 194 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh---------------------------------
Confidence 56799999999999999999984 67999998 5788655421110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc-------
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 319 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLl------- 319 (394)
....++++++.|||.+... ..+|+|+...++. ..+.....|+++++.|||||+++....+.
T Consensus 195 -----~gl~~rv~~~~~d~~~~~~-----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 195 -----KGVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred -----CCccceEEEEecCccCCCC-----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 0112348899999976321 2369988766554 23345689999999999999998543211
Q ss_pred ----hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 320 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 320 ----yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
+++-...+......-..+.+|+.++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998775
No 75
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.12 E-value=3.3e-10 Score=110.03 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHhhhhhccccccccccccc----------cc
Q 016155 171 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IH 229 (394)
Q Consensus 171 ~~~~VLvpGCGlGR----La~eLA~~-------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf----------i~ 229 (394)
++.+||++|||+|. ||..|++. ++.|+|+|+|..||..|+-- +||- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG-----------IYPERELEDLPKALLA 167 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC-----------CCCHHHHhcCCHHHHh
Confidence 45799999999997 45555553 47899999999999776621 1210 00
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
.+-.. ... ...+.+ ....++.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|
T Consensus 168 ~yf~~--~~~---~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 168 RYFSR--VED---KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred hhEEe--CCC---eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 00000 000 001100 112358999999987532 357899999854 343 355778999999999
Q ss_pred cCCcEEE
Q 016155 307 KDGGVWI 313 (394)
Q Consensus 307 KpGG~wI 313 (394)
||||+++
T Consensus 233 ~pGG~L~ 239 (264)
T smart00138 233 KPGGYLF 239 (264)
T ss_pred CCCeEEE
Confidence 9999998
No 76
>PHA03411 putative methyltransferase; Provisional
Probab=99.12 E-value=7.2e-10 Score=108.62 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=93.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..++.+ +..|+|+|+|..|+..++..+ |
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------------------~- 109 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------------------P- 109 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------------------c-
Confidence 3568999999999999998876 579999999999986554110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh---hh---------------HHHHHHHHHHhccC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKD 308 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta---~n---------------i~~yl~~I~~~LKp 308 (394)
++.++.+|++++.. .++||+|++. |+.... .+ +.+.+.....+|||
T Consensus 110 ----------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 110 ----------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred ----------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence 14678899987642 3689999985 653211 22 24566777888999
Q ss_pred CcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 309 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 309 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
+|..+-. |.- .+...-.|+.+|++++++..||....-=.+++.|
T Consensus 176 ~G~~~~~----yss------~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~ 219 (279)
T PHA03411 176 TGSAGFA----YSG------RPYYDGTMKSNKYLKWSKQTGLVTYAGCGIDTSI 219 (279)
T ss_pred CceEEEE----Eec------cccccccCCHHHHHHHHHhcCcEecCCCCcccce
Confidence 9966531 211 1111235899999999999999887644455443
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.11 E-value=1.5e-09 Score=107.27 Aligned_cols=160 Identities=17% Similarity=0.097 Sum_probs=94.3
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~fil 213 (394)
-+|.|..- |. .+-..|..-+......++.+|||+|||+|.++..||+. | =.|+|+|+|..|+. -++
T Consensus 106 eyR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~---dLl 174 (293)
T PTZ00146 106 EYRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR---DLT 174 (293)
T ss_pred eeeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH---HHH
Confidence 38999864 22 23334433222222236779999999999999999987 2 37999999987651 111
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCC
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el--y~~~~~~~~fD~VvT~fFlDt 291 (394)
+.+.+ ..|+.++.+|+..- |.. ..+.||+|+.... .
T Consensus 175 ~~ak~--------------------------------------r~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~ 212 (293)
T PTZ00146 175 NMAKK--------------------------------------RPNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--Q 212 (293)
T ss_pred HHhhh--------------------------------------cCCCEEEECCccChhhhhc--ccCCCCEEEEeCC--C
Confidence 11110 01245566776532 221 1357999976543 1
Q ss_pred hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 292 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 292 a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~-~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..+...++.+++++|||||.+|- .+..... .+.++ ..-++ +|+ +.|++.||++++...
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~p--e~~f~-~ev-~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII----SIKANCIDSTAKP--EVVFA-SEV-QKLKKEGLKPKEQLT 271 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE----EEeccccccCCCH--HHHHH-HHH-HHHHHcCCceEEEEe
Confidence 22344567789999999999984 2322211 01011 11133 445 778899999887553
No 78
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=1.4e-09 Score=101.92 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|++. |..++|+|+|..|+..++-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999765410 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
++.+..+|+.+. +..++||+|++... ++ ..++..++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567887662 34689999998753 43 4568899999999983 4554
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=7.3e-10 Score=103.59 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..++--+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 346899999999999999999999999999999999776622210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
..++++.++|+.+... .++||+||.. |||+..+++..+++.+...|+|||.+|-- |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g-----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG-----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE-----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE-----EecCCcc
Confidence 1237889999877543 5899998854 79998888999999999999999999941 3333210
Q ss_pred -CCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 328 -QEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 328 -~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.. ......+.+.+++.+. |..++
T Consensus 153 ~~w---gh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RRW---GHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HHT---T-S--HHHHHHHHHHH-SEEEE
T ss_pred ccc---CcccchHHHHHHHHHH-hhhee
Confidence 01 1345889999999875 55554
No 80
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=6.5e-09 Score=100.52 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=104.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||.|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4789999999999999999999 6 7899999999998766622211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh----------------hhHHHHHHHHHHhccCCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----------------HNIVEYIEIISRILKDGG 310 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta----------------~ni~~yl~~I~~~LKpGG 310 (394)
...++++++.+|+.++.. .....+||+|+++ ||-... -++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 122458999999988754 2344579999988 663221 246788999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP 366 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~ 366 (394)
.+.-+-| .....||..++.+++|...+...+.+.=...+
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A 203 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFVYPKIGKAA 203 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEecCCCCCcc
Confidence 9974322 23678999999999999988776555444444
No 81
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=3.1e-09 Score=99.16 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=76.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..+.+.+.. .++.+|||+|||+|.++..|+++ +-.|+|+|+|..|+..++-.++..
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 345555554432 25679999999999999999875 358999999999987655222110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
...+++++..+|+.+... ..+.||+|+...-+.. +.+.+.+.|||||+
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~ 168 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAST------IPSALVRQLKDGGV 168 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcch------hhHHHHHhcCcCcE
Confidence 011236788899876532 2468999987654432 33578899999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
+|-
T Consensus 169 lvi 171 (205)
T PRK13944 169 LVI 171 (205)
T ss_pred EEE
Confidence 974
No 82
>PRK06922 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-09 Score=117.50 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 4679999999999999999875 57999999999999655411100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-------------ta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.+.++.++.+|+.++.. .+.+++||+|++++.++ ...++...|++++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01125678888877531 12457899999875332 2356789999999999999999964
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.04 E-value=1.2e-08 Score=94.10 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++.++|++ +..|+|+|+|..|+..++-.++..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~-------------------------------- 87 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF-------------------------------- 87 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 5679999999999999999875 478999999999987655221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. ..+++++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||+++-
T Consensus 88 ------~-~~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 88 ------G-VKNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred ------C-CCCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 0 0136777888765332 1123456653 23344577899999999999999985
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.03 E-value=2.8e-09 Score=99.81 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
+++.+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..++..+...
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---------------- 125 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 44555554432 26779999999999999999998544 999999999997766333210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
. -.++.++.+|+.+... ..+.||+|+..... ..+.+.+.+.|||||++
T Consensus 126 ----------------------g-~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 126 ----------------------G-LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGIL 173 (215)
T ss_pred ----------------------C-CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEE
Confidence 0 0236788899877532 24689999865432 23456788999999999
Q ss_pred EE
Q 016155 313 IN 314 (394)
Q Consensus 313 IN 314 (394)
|-
T Consensus 174 v~ 175 (215)
T TIGR00080 174 VM 175 (215)
T ss_pred EE
Confidence 84
No 85
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=5.2e-09 Score=98.33 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..|+++. -.|+|+|++. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 56799999999999999998874 4799999988 41 0 01
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEeccc---CC-hhh-------HHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCFFI---DT-AHN-------IVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-----~~~~~~~fD~VvT~fFl---Dt-a~n-------i~~yl~~I~~~LKpGG~ 311 (394)
++.++.||+.+... .+...+.||+|++.... .. ..+ +...|+.++++|||||+
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 25678888877310 01235789999985422 11 111 24689999999999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++-
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 985
No 86
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.03 E-value=1.5e-09 Score=100.35 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=86.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-------------------------------- 63 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-------------------------------- 63 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------------
Confidence 4569999999999999999998 578999999999997654221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc---CChh--h---HHHHHHHHHHhccCCcEEEEecCcch
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAH--N---IVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFl---Dta~--n---i~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
.. .++.++.+|+.++.......+.+|.|+..|=. ...+ + ..++++.++++|||||.++-...
T Consensus 64 ------~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--- 133 (194)
T TIGR00091 64 ------GL-KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD--- 133 (194)
T ss_pred ------CC-CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---
Confidence 00 24788999987653111124689999876511 1100 1 14789999999999999973211
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEE
Q 016155 321 HFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 354 (394)
Q Consensus 321 h~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~ 354 (394)
...-.+++.+++.+.| |+.+.
T Consensus 134 -------------~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 134 -------------NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -------------CHHHHHHHHHHHHhCCCeEecc
Confidence 1123455666666655 87765
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=1.1e-08 Score=100.55 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..++.-.+. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~----~---------------------------- 168 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER----H---------------------------- 168 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------------
Confidence 3468999999999999999987 57999999999999777632211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIIS 303 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~ 303 (394)
....++.++.+|+.+.. ..++||+|++.= |+.. ..-....++.+.
T Consensus 169 ------~~~~~i~~~~~D~~~~~----~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~ 238 (284)
T TIGR03533 169 ------GLEDRVTLIQSDLFAAL----PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred ------CCCCcEEEEECchhhcc----CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 01123788999986632 135799999861 1110 012346688888
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 304 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 304 ~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++|||||+++- + +..+.+++++++.+.||.....
T Consensus 239 ~~L~~gG~l~~--------e----------~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 239 DHLNENGVLVV--------E----------VGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred HhcCCCCEEEE--------E----------ECcCHHHHHHHHHhCCCceeee
Confidence 99999999873 0 1124578899999999977653
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=1.2e-08 Score=97.99 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|+... ..|+|+|+|..|+..++..+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 56789999999999999999986 7899999999999766532210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 302 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt-------------------------a~ni~~yl~~I 302 (394)
....++.++.+|+.+.. ..++||+|++.. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 00123778888876532 247899999862 2221 12235678888
Q ss_pred HHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 303 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 303 ~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.++|||||+++- .|+ ...+++++++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999883 111 12467889999999985543
No 89
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.99 E-value=7e-09 Score=93.95 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=77.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
-+++.+... +..+|||+|||+|-++..+++++-. |+++|+|..++..++.-+.. +
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n------------ 78 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N------------ 78 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T------------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c------------
Confidence 455666654 4568999999999999999999876 99999999999776532210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-----hhHHHHHHHHHHhcc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-----HNIVEYIEIISRILK 307 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta-----~ni~~yl~~I~~~LK 307 (394)
.. .++.++.+|+.+-. ..++||+|+++-=+... .-+.++++...+.||
T Consensus 79 ----------------------~~-~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 79 ----------------------GL-ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp ----------------------TC-TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred ----------------------Cc-cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 00 11677888876632 25899999998422111 235678999999999
Q ss_pred CCcEEE
Q 016155 308 DGGVWI 313 (394)
Q Consensus 308 pGG~wI 313 (394)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999986
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=8.1e-09 Score=97.00 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=78.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
..+.+...+.+.+.. .++.+|||+|||+|.++..||++. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 334455555555432 256799999999999999998773 58999999999997766433210
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp 308 (394)
. ..++.++.||+.+.+. ..+.||+|+....+. ++.+.+.+.|||
T Consensus 125 --------------g-------------~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 --------------G-------------YDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred --------------C-------------CCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 0 0237889999876543 247899997654432 234577889999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999985
No 91
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.96 E-value=1.4e-08 Score=98.06 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..|+++ |..|+|+|+|..|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 458999999999999999876 67899999999999776632210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 303 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------------------------~ni~~yl~~I~ 303 (394)
.+..++.+|+.+.... ...++||+|++.- |+.+. .-+.+.++.+.
T Consensus 133 --------~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred --------cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 0124567777653210 1135799999772 33211 11346677778
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 304 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 304 ~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
++|||||+++-. ++ .-..+++..++++.||+.....
T Consensus 204 ~~L~~gG~l~l~----~~-------------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 204 DWLAPGGHLLVE----TS-------------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HhcCCCCEEEEE----EC-------------cchHHHHHHHHHHCCCCceeeE
Confidence 999999999831 11 1135689999999999876644
No 92
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.95 E-value=3.6e-09 Score=102.85 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=113.9
Q ss_pred HHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH-Hh
Q 016155 133 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC-SS 210 (394)
Q Consensus 133 ~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~-s~ 210 (394)
=|...++.=+.... | +......+..|-+.|.... .++.++||+|||.--.-..-|..-| +++..|++..=+.. -+
T Consensus 21 Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~k 97 (256)
T PF01234_consen 21 YLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEK 97 (256)
T ss_dssp HHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHH
T ss_pred HHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHH
Confidence 35555543332222 2 2234456666666665332 2567999999998555333344444 58999999877632 23
Q ss_pred hhhhccccccccccccccccccCCCC-------cccCccccccCCCCCCCCCCCCce-eEEecccccccCCCC---CCCC
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGF-SMCGGDFVEVYSDPS---QVGA 279 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~-------~~~qlr~v~iPDv~p~~~~~~~~l-s~~~GDf~ely~~~~---~~~~ 279 (394)
++ +.. .+..|+ ||+..-++... .+.++|. .+ .++..|.+..-..+. ...+
T Consensus 98 Wl-~~~-~a~DWs--~~~~~v~~lEg~~~~~~e~e~~lR~---------------~Vk~Vv~cDV~~~~pl~~~~~~p~~ 158 (256)
T PF01234_consen 98 WL-RKE-GAFDWS--PFWKYVCELEGKREKWEEKEEKLRR---------------AVKQVVPCDVTQPNPLDPPVVLPPK 158 (256)
T ss_dssp HH-TT--TS--TH--HHHHHHHHHTTSSSGHHHHHHHHHH---------------HEEEEEE--TTSSSTTTTS-SS-SS
T ss_pred HH-CCC-CCCCcc--HHHHHHHhccCCcchhhhHHHHHHH---------------hhceEEEeeccCCCCCCccccCccc
Confidence 33 222 222222 33222221111 1112221 11 355566655321111 1246
Q ss_pred ccEEEEecccCCh-hhHHHH---HHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 280 WDAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 280 fD~VvT~fFlDta-~ni~~y---l~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
||+|+|+|.|+.+ +++.+| ++.|.++|||||++|-.|-|--.+.. .|+.....+.|+.+.|++.++++||+++..
T Consensus 159 ~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 159 FDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 9999999998865 455555 77778899999999976655322221 232223467899999999999999999986
Q ss_pred eeccccCCCCcccccccccceEEE-EEEE
Q 016155 356 KTIETTYTTNPRSMMQNRYFTAFW-TMRK 383 (394)
Q Consensus 356 ~~i~~~Y~~d~~sm~~~~Y~~~f~-va~K 383 (394)
+. ......|...|| +|||
T Consensus 238 ~~----------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 238 EK----------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EG-----------TTTB---EEEEEEEEE
T ss_pred cc----------ccCcCCCCcEEEEEEeC
Confidence 61 223355666666 7877
No 93
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.95 E-value=8.5e-09 Score=80.52 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=75.7
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
+|||+|||.|.++..++. .+..++++|.+..++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 677999999999998655421000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a~ni~~yl~~I~~~LKpGG~wIN 314 (394)
....++.+..+|+.+... ...++||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001126778888877532 12478999998877666 67788999999999999999973
No 94
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.94 E-value=9.3e-09 Score=105.05 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 158 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 158 ~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
..|.+.+|.. ...+|||+|||+|.++..+++++ ..|+++|.|+.|+..++.-+.. + .
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n-------------~- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----N-------------M- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-------------C-
Confidence 4455666643 34699999999999999999984 7899999999999877632210 0 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC---ChhhHHHHHHHHHHhccCCc
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD---ta~ni~~yl~~I~~~LKpGG 310 (394)
+. ...++.+..+|+.+-. ..++||+|+++ |+.. +.....+.|+.++++|||||
T Consensus 277 -----------~~-------~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------PE-------ALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------cc-------cCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 00 0123677888875422 23589999997 4422 22234578999999999999
Q ss_pred EEEEe
Q 016155 311 VWINL 315 (394)
Q Consensus 311 ~wIN~ 315 (394)
.++-+
T Consensus 335 ~L~iV 339 (378)
T PRK15001 335 ELYIV 339 (378)
T ss_pred EEEEE
Confidence 99854
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.94 E-value=3e-08 Score=102.33 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..... +
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~---------------------------- 298 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L---------------------------- 298 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------------
Confidence 3458999999999999999875 57899999999999776632210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh--------------------h----hHHHHHHHHH
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA--------------------H----NIVEYIEIIS 303 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta--------------------~----ni~~yl~~I~ 303 (394)
+.++.++.+|+.+... + ..++||+|+++= |+.+. + -+.+.++.+.
T Consensus 299 --------g~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 299 --------GARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred --------CCcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 0126788899865321 1 135799999862 33221 1 1234566667
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 304 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 304 ~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.|||||.++. +|. --.+++++++++.||..++..
T Consensus 369 ~~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 89999999873 111 135789999999999876543
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.92 E-value=1.5e-08 Score=94.40 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+...+.+.+.. .++.+|||+|||+|.++..|++++..|+++|.|..|+..++-.+...
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 344455554432 25679999999999999999999779999999999987665332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
. -.++++..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|-
T Consensus 124 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 --------G-------------LHNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred --------C-------------CCceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 0 0126788888765432 24789999865432 2335677899999999984
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.91 E-value=1.4e-08 Score=102.37 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..+++++ ..|+++|+|..|+..++.-+.. +. +
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n~-------------------l-------- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----NG-------------------L-------- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC-------------------C--------
Confidence 4589999999999999999985 4899999999999877633211 00 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCC-hhhHHHHHHHHHHhccCCcEEEEec
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F---lDt-a~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
...++.+|+.+. ..+.||+|++.. | +++ .....++|+.+.+.|||||.++-+.
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 024456665442 147899999874 2 233 3456789999999999999997543
No 98
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.90 E-value=2e-08 Score=93.60 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||.|.|...|.+ ++-.++|+|++...+..+-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv--------------------------------------- 53 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV--------------------------------------- 53 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH---------------------------------------
Confidence 567999999999999888866 7999999999998874221
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----Eec---------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLG--------- 316 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI----N~G--------- 316 (394)
..+++.++||+.+--. .+.+++||.||-.--|....+..+.|+++.|+ |..-| |||
T Consensus 54 -------~rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 54 -------ARGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred -------HcCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHH
Confidence 1236678888755211 24579999999766666667777777777665 54555 332
Q ss_pred -----C----cchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecc
Q 016155 317 -----P----LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 359 (394)
Q Consensus 317 -----P----Llyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~ 359 (394)
| |-|.|.+. |+.. .+|..|++++..+.|++|++...+.
T Consensus 123 ~~GrmPvt~~lPy~WYdT----PNih-~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDT----PNIH-LCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred hcCCCCCCCCCCCcccCC----CCcc-cccHHHHHHHHHHCCCEEEEEEEEc
Confidence 1 11333322 2111 4699999999999999999876433
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=4.3e-08 Score=97.41 Aligned_cols=122 Identities=12% Similarity=0.172 Sum_probs=85.1
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 173 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+|||+|||+|.++..||.. +..|+|+|+|..|+..++.-+.. +
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~----~------------------------------ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER----H------------------------------ 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h------------------------------
Confidence 68999999999999999987 46899999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 305 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~~~ 305 (394)
...+++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 011237889999876321 35799999861 1110 11234678888999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 306 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 306 LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
|||||+++- + +..+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~--------E----------~g~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVV--------E----------VGNSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEE--------E----------ECcCHHHHHHHHhhCCCEEEE
Confidence 999999973 0 111345688888888886654
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=1.1e-08 Score=101.35 Aligned_cols=130 Identities=26% Similarity=0.312 Sum_probs=90.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh--hhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~ 231 (394)
-.++.|+++.. ++.+|||+|||+|-|+..-+++|. .|.|+|+++..+..++.- +|...
T Consensus 150 lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-------------- 210 (295)
T PF06325_consen 150 LCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-------------- 210 (295)
T ss_dssp HHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T--------------
T ss_pred HHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC--------------
Confidence 46777777643 567999999999999999999998 599999999998766632 11110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
.++.. ....+. ..++||+|+.+-..+. +...+..+.++|||||+
T Consensus 211 --------------------------~~~~v--~~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~ 254 (295)
T PF06325_consen 211 --------------------------DRIEV--SLSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGY 254 (295)
T ss_dssp --------------------------TCEEE--SCTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEE
T ss_pred --------------------------eeEEE--EEeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCE
Confidence 11211 111111 2378999998765444 56788999999999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+|--|=| .=-.+++++.+++ ||++++..
T Consensus 255 lIlSGIl----------------~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 255 LILSGIL----------------EEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEEEE----------------GGGHHHHHHHHHT-TEEEEEEE
T ss_pred EEEcccc----------------HHHHHHHHHHHHC-CCEEEEEE
Confidence 9964322 2256788898977 99998755
No 101
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.4e-08 Score=98.99 Aligned_cols=136 Identities=28% Similarity=0.277 Sum_probs=94.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
-.+++|+++.- ++.+|||+|||+|-|+...+++|.. |.|+|+.+..+.+|+- |... |..
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~~--N~v----------- 210 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NARL--NGV----------- 210 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHHH--cCC-----------
Confidence 46677777653 6789999999999999999999986 9999999999987763 2110 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
... ......+-.+.. ..+.||+||.+-. |.=+......|+++|||||++|
T Consensus 211 --~~~---------------------~~~~~~~~~~~~----~~~~~DvIVANIL---A~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 211 --ELL---------------------VQAKGFLLLEVP----ENGPFDVIVANIL---AEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred --chh---------------------hhcccccchhhc----ccCcccEEEehhh---HHHHHHHHHHHHHHcCCCceEE
Confidence 000 000011111111 2368999998763 3346789999999999999999
Q ss_pred EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 314 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 314 N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
--|=| .=-.+.+.+.+++.||++++..
T Consensus 261 lSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 261 LSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 64421 1126788889999999999854
No 102
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=96.38 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=95.2
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA-~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+..||++|||||+.--.+- ..|-.||++|-++.|-.++.. .+.++ ++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~k---s~~E~----------------------k~------ 124 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADK---SAAEK----------------------KP------ 124 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHH---HHhhc----------------------cC------
Confidence 56678999999999844443 468899999999999865552 11111 11
Q ss_pred CCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCc------
Q 016155 250 HPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPL------ 318 (394)
Q Consensus 250 ~p~~~~~~~~l-s~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~----GPL------ 318 (394)
.++ .|+.++-.++... .++++|+||..|.|=..++..+.|+++.++|||||++|-+ |+-
T Consensus 125 --------~~~~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 125 --------LQVERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred --------cceEEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 123 3777777666432 4789999999999888889999999999999999999942 211
Q ss_pred -------chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 -------LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 -------lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+||+..+ .=.|++ |+-++|+.+-|+++..+
T Consensus 195 ~q~v~ep~~~~~~d-------GC~ltr-d~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 195 LQQVAEPLWHLESD-------GCVLTR-DTGELLEDAEFSIDSCK 231 (252)
T ss_pred HHHHhchhhheecc-------ceEEeh-hHHHHhhhcccccchhh
Confidence 1222211 123444 35567778889988855
No 103
>PHA03412 putative methyltransferase; Provisional
Probab=98.87 E-value=1.8e-08 Score=96.97 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
.+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------------------- 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------------------- 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------------------------------
Confidence 3579999999999999999874 358999999999997665211
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChh---------h-HHHHHHHHHHhccCCcEEE
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~---------n-i~~yl~~I~~~LKpGG~wI 313 (394)
.++.+..+|+..... .++||+||++ |+..... . ...+++.+.++|+||+..+
T Consensus 97 ------------~~~~~~~~D~~~~~~----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 97 ------------PEATWINADALTTEF----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ------------cCCEEEEcchhcccc----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 014567788875321 4689999999 6532211 1 4457888889888877643
Q ss_pred --EecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccC
Q 016155 314 --NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 362 (394)
Q Consensus 314 --N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y 362 (394)
++.|.-|.+..-+. ..-..+-.+..+..++-|.....-=.|++.|
T Consensus 161 P~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (241)
T PHA03412 161 PQMSANFRYSGTHYFR----QDESTTSSKCKKFLDETGLEMNPGCGIDTGY 207 (241)
T ss_pred CcccccCcccCcccee----eccCcccHHHHHHHHhcCeeecCCCCcccee
Confidence 34444443221110 0112456778888888887665544566554
No 104
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.86 E-value=5.2e-08 Score=91.77 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=102.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHH-HHHhhhhhcccccccccccccccc
Q 016155 154 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM-ICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 154 ~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML-~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.||++.|+++++.. +.+||++|||||-.+..+|+. ...-|--|.....+ .+..++...
T Consensus 12 ~pIl~vL~~~l~~~----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDS----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------------- 72 (204)
T ss_pred hHHHHHHHHHhCcc----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc---------------
Confidence 58999999999853 226999999999999999988 34556778777664 222222110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhcc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~f--FlDta~ni~~yl~~I~~~LK 307 (394)
...+..+++. +.+...+ -.+-. -+...+.||+|++.- .|-.-+.....|+...++||
T Consensus 73 -----~~~Nv~~P~~--------------lDv~~~~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~ 132 (204)
T PF06080_consen 73 -----GLPNVRPPLA--------------LDVSAPP-WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK 132 (204)
T ss_pred -----CCcccCCCeE--------------eecCCCC-CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC
Confidence 0001111211 1111110 00000 011347899999885 45556668889999999999
Q ss_pred CCcEEEEecCcchhhhhc------c-----CCCCCcccc-CCHHHHHHHHHhCCCEEEEEe
Q 016155 308 DGGVWINLGPLLYHFADL------Y-----GQEDEMSIE-LSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 308 pGG~wIN~GPLlyh~~~~------~-----g~~~~~~ie-LS~eEl~~ll~~~GF~ii~e~ 356 (394)
|||+++-+||..+.-.-. + ...| ... -..|+|.+++.+.|++.++..
T Consensus 133 ~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 133 PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCccc
Confidence 999999999987752110 0 0122 222 278999999999999987643
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.85 E-value=1.1e-07 Score=92.93 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.+|||+|||+|.++..||..+ ..|+|+|+|..|+..++..... +
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 305 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDt------------------------a~ni~~yl~~I~~~ 305 (394)
....++.++.+|+.+.. ..++||+||++= |+.. ...+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~----~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPL----AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccC----cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 00123778899987632 124799999861 2211 12355788899999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHH-hCCCEEEEE
Q 016155 306 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 355 (394)
Q Consensus 306 LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~-~~GF~ii~e 355 (394)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 221 13456777777 478976543
No 106
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.83 E-value=1.8e-08 Score=90.67 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=66.4
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCc-------chhhh-hc---
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-DL--- 325 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN--~GPL-------lyh~~-~~--- 325 (394)
+++++.||+.++. ..+++||+|++.|-+...+|..+.+++++++|||||.++. +++. ++.|. ..
T Consensus 27 ~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 4789999998863 4568999999888777667889999999999999999974 2211 11110 00
Q ss_pred -----cCCCCC-----cc--ccCCHHHHHHHHHhCCCEEEEEe
Q 016155 326 -----YGQEDE-----MS--IELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 326 -----~g~~~~-----~~--ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.+.... .+ -.++.+|+.++++++||+.+...
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 000000 01 13599999999999999987644
No 107
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=94.92 Aligned_cols=160 Identities=18% Similarity=0.274 Sum_probs=100.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 230 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~ 230 (394)
.++.+..++++.... ...+||.+|||.|...+-|.+- +..|.+.|+|+-.+..-+ ++. .-..-..++|+
T Consensus 56 wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk---~~~-~~~e~~~~afv-- 128 (264)
T KOG2361|consen 56 WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK---KSS-GYDESRVEAFV-- 128 (264)
T ss_pred HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH---hcc-ccchhhhcccc--
Confidence 455666666664321 3348999999999999999765 578999999998874322 111 00111111111
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc--ccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhc
Q 016155 231 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRIL 306 (394)
Q Consensus 231 ~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e--ly~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~L 306 (394)
-|++. +.. +...+++|+|+..|.|- ..+.....|+.++++|
T Consensus 129 ----------------------------------~Dlt~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 129 ----------------------------------WDLTSPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred ----------------------------------eeccchhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 12211 111 23468999998888654 2345788999999999
Q ss_pred cCCcEEEE--ecC-----cchhhhhc------cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 307 KDGGVWIN--LGP-----LLYHFADL------YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 307 KpGG~wIN--~GP-----Llyh~~~~------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||||.++- +|- |.++-... -.++....+.++.|||..+++++||..++..
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence 99999984 331 11110000 0112234678999999999999999887643
No 108
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=96.95 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=90.0
Q ss_pred cCcc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 140 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 140 DWS~----eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
+|+. ..+.||.. |..+.|.+ +|.. ...+|.|+|||.|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLla~-Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLLAR-VPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHHhh-CCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5765 46677765 55555544 5543 5679999999999999999999 7889999999999975541
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 293 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ 293 (394)
..|| .+|..||..++.. ...+|+++++-.+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 1222 5778899988753 46789999875444444
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 016155 294 NIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 294 ni~~yl~~I~~~LKpGG~wI 313 (394)
+-.+.|..+...|.|||++-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred ccHHHHHHHHHhhCCCceEE
Confidence 45578999999999999997
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.80 E-value=3.3e-08 Score=97.05 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++.++++. +. .|+++|++..|+..++--+.... ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~---------------~~-------------- 126 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA---------------GG-------------- 126 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc---------------cc--------------
Confidence 4679999999999999999987 54 79999999999976653221000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
.....++.++.+|..++-. ...++||+|+.-.+-.. +..+ .++++.+++.|||||+++.
T Consensus 127 -----~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 127 -----AYDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -----cccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0001347889999887532 23578999987543221 1122 5789999999999999995
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=8.3e-08 Score=101.51 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||+|||+|.++..||.. +..|+|+|+|..|+..++..... +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 57899999999999776632110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 303 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta-------------------------~ni~~yl~~I~ 303 (394)
...+++.++.+|+.+... .++||+||++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236788899866321 36899999852 22111 12334577888
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 304 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 304 ~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
++|||||.++- +| .-..+.+.+++.+.||..++.
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceEE
Confidence 99999999873 11 114578888999999986653
No 111
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.79 E-value=4.8e-08 Score=100.05 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..|||+|||+|+.+..+|++ +..++|+|++..|+..+..-. .+. .
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka---~~~-----------------------g----- 170 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI---ELL-----------------------N----- 170 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH---HHc-----------------------C-----
Confidence 4678999999999999999998 578999999999986544111 100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-h--hh----HHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-A--HN----IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-a--~n----i~~yl~~I~~~LKpGG~wI 313 (394)
-.|+.++.+|+.++.. ...++++|.|+..|- |. . .. ..++++.++++|||||.|.
T Consensus 171 --------L~NV~~i~~DA~~ll~-~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 171 --------LKNLLIINYDARLLLE-LLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred --------CCcEEEEECCHHHhhh-hCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 1247889999876532 234689999987652 32 1 10 1478999999999999987
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.78 E-value=3e-08 Score=90.86 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 678999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec--------ccCCh---hhHHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDTA---HNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~-----~~~~~~~fD~VvT~f--------FlDta---~ni~~yl~~I~~~LKpGG~ 311 (394)
.++.++.+|+.+... .....+.||+|++.. .++.. .++.+.++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013445556544210 001246799998632 12221 2346789999999999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 985
No 113
>PRK03612 spermidine synthase; Provisional
Probab=98.72 E-value=1.8e-07 Score=99.17 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||.|.++.++++.+ -+|+++|++..|+..++.- |+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 46799999999999999999885 4899999999999766520 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCcchhh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 322 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n-----i~~yl~~I~~~LKpGG~wIN-~GPLlyh~ 322 (394)
++... -...+++++.+|..+... ...++||+|+..+.-...+. -.++++.+.+.|||||+++- .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001247889999887432 23478999998754322111 13689999999999999984 3322111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCC
Q 016155 323 ADLYGQEDEMSIELSLEDVKRVALHYGF 350 (394)
Q Consensus 323 ~~~~g~~~~~~ieLS~eEl~~ll~~~GF 350 (394)
. -...++.+.+++.||
T Consensus 422 ~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGL 437 (521)
T ss_pred h------------HHHHHHHHHHHHcCC
Confidence 0 022578888889999
No 114
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.72 E-value=1.2e-07 Score=92.15 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=81.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
.|...+..+.-.... ++.+||++|||+|.++.++++.+ -.++++|++..|+..++-.+....
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~------------ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA------------ 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc------------
Confidence 355555554443322 34599999999999999998885 479999999999876653221100
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHh
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 305 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~n--i~~yl~~I~~~ 305 (394)
. .+ ...+++++.+|..+... ...++||+|+.-.+ .....+ -.++++.+.++
T Consensus 121 ---~---------~~-----------~~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SY-----------DDPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------cc-----------cCCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 00 01236777788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 016155 306 LKDGGVWIN 314 (394)
Q Consensus 306 LKpGG~wIN 314 (394)
|||||+++-
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999985
No 115
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.72 E-value=6.3e-08 Score=92.13 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...-|||+|||+|--+-.|...|+...|+|+|..||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 56789999999999999999999999999999999965541 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-----------cCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-----------IDTAHNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF-----------lDta~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
-.++.+||-+ +.|+..++||.|++.-- =++..-+..+|.+++.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1356678764 44678899999886521 12334466789999999999999983 2
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ 351 (394)
|--++ +=..|.|.+-+.++||-
T Consensus 160 fYpen----------~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPEN----------EAQIDMIMQQAMKAGFG 181 (270)
T ss_pred ecccc----------hHHHHHHHHHHHhhccC
Confidence 21111 22567777778888985
No 116
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.72 E-value=1.6e-08 Score=96.64 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
.-.++||+|||||=.+-.|..+--+.+|+|+|.-||..|. ++ .+|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eK---g~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EK---GLYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hc---cchH------------------------
Confidence 3579999999999999999999899999999999996544 11 1221
Q ss_pred CCCCCCCCceeEEecc---cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-e--cCcchhhhh
Q 016155 251 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-L--GPLLYHFAD 324 (394)
Q Consensus 251 p~~~~~~~~ls~~~GD---f~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~--GPLlyh~~~ 324 (394)
.+.++| |++. ...+.||.|+..=.+.-.-++...+-.+...|+|||.|+- + +|--+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~----~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLED----LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhh----ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 3332 2358899998653332233455678889999999999983 1 221122211
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.|...+-=+..-++.++...||+++..+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEee
Confidence 1111233478889999999999999855
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=9.2e-08 Score=86.28 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++.+|++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998654411100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.++.+|+.++.. ..+.||.|+++.-.. +.+-+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 0237789999988632 234699999874222 22223333332 1245777776
No 118
>PLN03075 nicotianamine synthase; Provisional
Probab=98.71 E-value=1.2e-07 Score=93.97 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=75.6
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRL-ALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL-a~eLA~-~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+.+||++|||-|.+ +.-+++ ++ -.++|+|.|..|+..|+-.....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 568999999997766 444443 32 35999999999998777332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEEE
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+ ...+++.|..+|..++.. ..+.||+|++...++ +.++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999988642 246899998884444 246688999999999999999994
No 119
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=2.6e-07 Score=93.99 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|++..+.. . +
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~----- 203 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------A----- 203 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------c-----
Confidence 46699999999999999999875 589999999999977662 111110000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCcchh
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 321 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt----a~ni--~~yl~~I~~~LKpGG~wIN~-GPLlyh 321 (394)
-...+++++.+|..++-. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 204 ------~~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 204 ------FFDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred ------CCCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 012358889999987532 23578999987643 21 1122 46899999999999999862 111111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
..-.-.+.+.++++||....-..
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEE
Confidence 00112367788899997775443
No 120
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.68 E-value=3.6e-07 Score=86.49 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 127 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 127 ~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
++..-.-.++=+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 4555566777788898652 23477777643 2 4567889999999999664 35677877776430
Q ss_pred HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 016155 207 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 286 (394)
Q Consensus 207 ~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~ 286 (394)
| -.+++.|+..+. -.+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vP---L~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVP---LEDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCc---CCCCceeEEEEE
Confidence 0 134677887764 357999999999
Q ss_pred cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 287 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 287 fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-|.- .|..+||++.+|+|||||.+.-.-. .+..-+.++..+.++++||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV--------------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIAEV--------------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEEEE--------------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEEEe--------------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87764 3799999999999999999874110 1223377899999999999998754
No 121
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=4.6e-08 Score=93.59 Aligned_cols=177 Identities=22% Similarity=0.263 Sum_probs=113.6
Q ss_pred HHHHHhhcCcccChhHHhhchHHHHHHHHhhCCC---CCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 016155 133 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPN---RSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 133 ~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~---~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~ 208 (394)
-++.+-|||.+--..... ..+.+++-.++-+ +..+..+.++|+|||+|.++..|...|. ..+-.|-|+.|+--
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 467788898763222221 2344443322211 1123567899999999999999999996 46789999999843
Q ss_pred HhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc
Q 016155 209 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 288 (394)
Q Consensus 209 s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF 288 (394)
++ ... + |-+ .+++..+| .|.. ++.++++|.|+|..-
T Consensus 111 ~~-------~~q------------------d-------p~i---------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR-------DAQ------------------D-------PSI---------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh-------ccC------------------C-------Cce---------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 22 110 0 111 26777777 3321 356899999998876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCcchhhhhc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 289 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFADL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 289 lDta~ni~~yl~~I~~~LKpGG~wIN--~-GPLlyh~~~~---------~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+.=..++...+..+...|||+|.||. + |--+|...-. -|..|..+-.--..|+-.|+.++||......
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 55555566899999999999999995 3 4445543221 1223322222345789999999999987643
No 122
>PRK04457 spermidine synthase; Provisional
Probab=98.66 E-value=2.3e-07 Score=90.21 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++..+++. +-.++++|++..|+..++.... .|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~- 113 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP- 113 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC-
Confidence 4568999999999999999876 4689999999999976652110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta----~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.||+.+... ...++||+|+.-.|-... -.-.++++.+.++|+|||+++
T Consensus 114 ------~~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 ------ENGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred ------CCCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 011347889999887532 224689999865442221 123589999999999999997
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.66 E-value=2.1e-07 Score=93.30 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=73.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
.++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..++..+...
T Consensus 67 ~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------------- 128 (322)
T PRK13943 67 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------------- 128 (322)
T ss_pred HHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 344455444432 2567999999999999999998642 5999999999997666332110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
. .+++.++.||+.+... ..+.||+|+..+-++ ++ ...+.+.|||||+
T Consensus 129 -----------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG~ 175 (322)
T PRK13943 129 -----------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGGR 175 (322)
T ss_pred -----------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCCE
Confidence 0 0136778888776432 236799998765433 22 3456789999999
Q ss_pred EEE
Q 016155 312 WIN 314 (394)
Q Consensus 312 wIN 314 (394)
++.
T Consensus 176 Lvv 178 (322)
T PRK13943 176 VIV 178 (322)
T ss_pred EEE
Confidence 874
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=2.4e-07 Score=88.56 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=79.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.+.. +..+||++|||+|.-+..||.. +-.|+++|.+..++..++..+...
T Consensus 59 ~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~---------------- 116 (234)
T PLN02781 59 FLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA---------------- 116 (234)
T ss_pred HHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4669999999999988877764 358999999999997776433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--C-CCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~-~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
...+++.++.||+.++... + ...++||+| |+|.. ++..+|++.+.++|||
T Consensus 117 ----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 117 ----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred ----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998875210 0 114689998 66754 5567999999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||++|-
T Consensus 171 GG~ii~ 176 (234)
T PLN02781 171 GGIIAF 176 (234)
T ss_pred CeEEEE
Confidence 999884
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.58 E-value=1.7e-06 Score=80.42 Aligned_cols=123 Identities=24% Similarity=0.238 Sum_probs=90.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
+++.+++|+|||+|.++.|+|..| -+|+|+|-+..++...+. |... +
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~~--------------------------f--- 81 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAAR--------------------------F--- 81 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHHH--------------------------h---
Confidence 367899999999999999999666 479999999999865442 2110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
. -+|+.++.||.-+.... ..+||+| ||--..++.+.|+.....|||||++|-.
T Consensus 82 -------g-~~n~~vv~g~Ap~~L~~---~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~n------------ 134 (187)
T COG2242 82 -------G-VDNLEVVEGDAPEALPD---LPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVAN------------ 134 (187)
T ss_pred -------C-CCcEEEEeccchHhhcC---CCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEE------------
Confidence 0 23588999998775431 2379988 5666678999999999999999999831
Q ss_pred CCCCccccC-CHHHHHHHHHhCCC-EEEEE
Q 016155 328 QEDEMSIEL-SLEDVKRVALHYGF-EFEKE 355 (394)
Q Consensus 328 ~~~~~~ieL-S~eEl~~ll~~~GF-~ii~e 355 (394)
.+.| +.-.+.+.+++.|| +++..
T Consensus 135 -----aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 135 -----AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred -----eecHHHHHHHHHHHHHcCCceEEEE
Confidence 0111 45556677889999 66653
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=5.9e-07 Score=87.39 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...++||+|+|-|..+..+|..--.|++.|.|..|.. .|+. ..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~~v-------------------------- 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGFTV-------------------------- 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCCeE--------------------------
Confidence 5678999999999999999998889999999999952 2321 11211
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcchhhhhccC-
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYHFADLYG- 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~--GPLlyh~~~~~g- 327 (394)
+ |..++.. ...+||+|.+...||.+.++...|+.|++.|+|+|++|-. =|. -+|-..-+
T Consensus 140 ------------l--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 140 ------------L--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred ------------E--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 1 1122221 2468999988889999999999999999999999999952 222 12322111
Q ss_pred C--CCC-------ccccCCHHHHHHHHHhCCCEEEEEeeccccCCC
Q 016155 328 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 364 (394)
Q Consensus 328 ~--~~~-------~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~ 364 (394)
. .|. .++|=..+-+..+++.+||+++.-. ..+|.-
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t--r~PYLc 245 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT--RLPYLC 245 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe--ccCccc
Confidence 1 121 1222234445678899999998743 346654
No 127
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.55 E-value=9e-07 Score=91.08 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++...+..|. .|+++|.|..|+..++.-+.. + .+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 467999999999999998887776 899999999999766522210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~--fFlDta-------~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
..+++++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++-+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 02378899998875310 0124689999866 555442 234566778889999999998421
Q ss_pred hhhhhccCCCCCccccCCHHHHHHHHHh
Q 016155 320 YHFADLYGQEDEMSIELSLEDVKRVALH 347 (394)
Q Consensus 320 yh~~~~~g~~~~~~ieLS~eEl~~ll~~ 347 (394)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 1 224567777776653
No 128
>PLN02366 spermidine synthase
Probab=98.52 E-value=8.8e-07 Score=88.35 Aligned_cols=108 Identities=24% Similarity=0.273 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||.|.++.++++.. -.|+.+|++..|+..++--+ | .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~---------------------~ 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------P---------------------D 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------h---------------------h
Confidence 46799999999999999999984 47999999999997665221 1 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt--a~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
+.. .....++.++.+|..+.... ...++||+|+.-.+-.. +.. -.++++.++++|+|||+++.
T Consensus 138 ~~~--~~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 138 LAV--GFDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hcc--ccCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 000 00123588999998764321 12468999986543211 111 24789999999999999975
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=8e-07 Score=91.97 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+|||+|||+|..+..++.++ ..|+|+|+|..|+..++..+...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------------------------------- 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------------------------------- 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999885 48999999999997655222110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhH-------HHHHHHHHHhc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 306 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~f------------FlDta~ni-------~~yl~~I~~~L 306 (394)
+-++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 292 --------g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 292 --------GLKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred --------CCCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00145677887764210 12467999983 22 11223333 36799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 354 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~-~GF~ii~ 354 (394)
||||+++-..--+ ..+=+.+.+...+++ -+|+++.
T Consensus 363 kpGG~lvystcs~-------------~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSI-------------LPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCC-------------ChhhCHHHHHHHHHhCCCCEEec
Confidence 9999998311000 112245677777765 4787665
No 130
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.49 E-value=1.9e-06 Score=86.78 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||-|....-....+. .+.|+|+|..-|.-|+--.+...+.. ...+. ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~----------------~~~~~-~~~f--- 121 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRN----------------NSKQY-RFDF--- 121 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTST----------------T-HTS-EECC---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccc----------------ccccc-cccc---
Confidence 678999999999998888888875 68899999999855443221111000 00000 0011
Q ss_pred CCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~e-----ly~~~~~~~~fD~VvT~f----FlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
...++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||.
T Consensus 122 ---------~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 122 ---------IAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp ---------EEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---------hhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 13456665542 122 1246999986555 256888888899999999999999994
No 131
>PLN02672 methionine S-methyltransferase
Probab=98.48 E-value=1.8e-06 Score=98.07 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=93.0
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4589999999999999999875 5899999999999777632211 0 000000 0000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------hh----------------------------
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 294 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta------~n---------------------------- 294 (394)
........+++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112358999999877432 1123699999982 33211 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCccccCCHHHHH-HHHHhCCCEEEEEe--eccccCCCCcc
Q 016155 295 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK--TIETTYTTNPR 367 (394)
Q Consensus 295 ---i~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~eEl~-~ll~~~GF~ii~e~--~i~~~Y~~d~~ 367 (394)
+.+.++...++|||||.++- +|. --.+.+. +++++.||+.++.. .+-..=.+|..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~ 315 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLWQTKINQAADTDIS 315 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEeeehhhhccccchH
Confidence 13345666689999998873 331 0235677 68999999987754 23333344444
Q ss_pred cc
Q 016155 368 SM 369 (394)
Q Consensus 368 sm 369 (394)
.|
T Consensus 316 ~~ 317 (1082)
T PLN02672 316 AL 317 (1082)
T ss_pred HH
Confidence 33
No 132
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.48 E-value=4.9e-07 Score=86.98 Aligned_cols=102 Identities=18% Similarity=0.286 Sum_probs=69.8
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
.++|+|||+|--+.-+|..--+|.|+|.|..||-.+. .+.. ..+ ..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~---k~~~--~~y--------------------------~~--- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK---KHPP--VTY--------------------------CH--- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh---cCCC--ccc--------------------------cc---
Confidence 7899999999777888887668999999999996443 1100 000 00
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhh
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFAD 324 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f-FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~ 324 (394)
...+|...++.+|.+. +++.|+|++. + +.| +.++++.++|+|||.|-.| +.|.|.+
T Consensus 82 ----t~~~ms~~~~v~L~g~---e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i----avW~Y~d 140 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLGG---EESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI----AVWNYND 140 (261)
T ss_pred ----CCccccccccccccCC---CcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE----EEEEccC
Confidence 1145666677777652 5899998754 2 333 5689999999999877555 3455553
No 133
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.48 E-value=3.1e-06 Score=80.51 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eL-A~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...++||.|||-||.+..| ...--.|.-+|.....+..|+--+.. . ..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC----------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC----------
Confidence 5679999999999999866 55545789999999999766522110 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE---EecCcchhhhh
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLYHFAD 324 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wI---N~GPLlyh~~~ 324 (394)
.--.+...-+.++.+ ..++||+|.+-+.+- |-.++++||+.....|+|||+.| |+..--+..-|
T Consensus 104 --------~v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D 172 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFD 172 (218)
T ss_dssp --------CEEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEE
T ss_pred --------CcceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccC
Confidence 002333333344432 247999999887543 34569999999999999999998 55432211011
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 325 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 325 ~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
....++.-|.+.++++++++|+++++++
T Consensus 173 ----~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 173 ----EEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp ----TTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ----CccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 1124788899999999999999999966
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.48 E-value=6.1e-07 Score=98.39 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.+|||+|||+|.++..+|+.|. .|+++|+|..|+..++.-+.. + .+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 467999999999999999999997 499999999999776632211 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC---------hhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt---------a~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
..+++++.+|+.++... ..++||+||.. +|... ..+..+++..+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLKE--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHHH--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 02378899998775321 14689999875 44321 23455678888899999999873110
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+-.++.+ .+++.+.||++....
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEIT 679 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEEe
Confidence 0112222 667778899887643
No 135
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=84.43 Aligned_cols=152 Identities=22% Similarity=0.261 Sum_probs=100.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
|+.+.+.+.-- -..+.+.+|||-.-|+|..|.+-+++|. .|..+|-...-|..| +|-||-+.
T Consensus 119 P~~Dt~~Kv~~-V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr~--- 181 (287)
T COG2521 119 PLEDTLAKVEL-VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSRE--- 181 (287)
T ss_pred cHHHHHhhhhe-eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCcc---
Confidence 45555554211 1123688999999999999999999999 999999998776422 23344321
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG 310 (394)
+.. ..+.++.||..++-. .+.+++||+|+-- |-+-+.---.++.++++|+|||||
T Consensus 182 -------l~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 182 -------LFE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred -------ccc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 110 137889999988654 3568899999843 445553334578999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.+.. |-..+|.. -....+ ...+.+.|.++||+.++
T Consensus 240 rlFH-------YvG~Pg~r-yrG~d~-~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 240 RLFH-------YVGNPGKR-YRGLDL-PKGVAERLRRVGFEVVK 274 (287)
T ss_pred cEEE-------EeCCCCcc-cccCCh-hHHHHHHHHhcCceeee
Confidence 9874 33222100 001122 35677788899999776
No 136
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.47 E-value=1.1e-06 Score=85.37 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 128 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+-.-.-.++=+.-|.... ...|+..|+.. | ...-|-|.|||-++||. ..-..|...|+-.
T Consensus 150 dlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec----
Confidence 334444555566787652 23477888765 2 45678899999999975 2222333333211
Q ss_pred HHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 016155 208 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 287 (394)
Q Consensus 208 ~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f 287 (394)
.+=.+++.||..+. -++++.|++|.|.
T Consensus 210 --------------------------------------------------~~~~V~~cDm~~vP---l~d~svDvaV~CL 236 (325)
T KOG3045|consen 210 --------------------------------------------------VNERVIACDMRNVP---LEDESVDVAVFCL 236 (325)
T ss_pred --------------------------------------------------CCCceeeccccCCc---CccCcccEEEeeH
Confidence 11245778998864 4689999999998
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 288 FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-|.- .|+.++|++++|+|||||+|--. -+ .+..-+.-.+.+.++++||++.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IA-Ev-------------~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIA-EV-------------KSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEE-eh-------------hhhcccHHHHHHHHHHcCCeeeehh
Confidence 7654 37999999999999999987420 00 1233356668899999999998744
No 137
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=1.3e-06 Score=90.81 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..++++ +..|+|+|+|..|+..++-.++.. .+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999997655322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e----cc--------cCChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----FF--------IDTAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~----fF--------lDta~ni-------~~yl~~I~~~ 305 (394)
.++.++.+|+.++.. .+.||+|+. | .+ ..+..++ .+.|..++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778889877532 468999983 1 11 1122222 2579999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 367 lkpgG~lv 374 (445)
T PRK14904 367 LKPGGVLV 374 (445)
T ss_pred cCCCcEEE
Confidence 99999998
No 138
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.45 E-value=1.7e-06 Score=81.73 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhcCcccC-h-------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 016155 128 DKVRCIIRNIVRDWAAEG-K-------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 192 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg-~-------------~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~- 192 (394)
..|..+++.+-|++--.. . .++...-+.+...+.+.+.- +++.+||++|||+|.++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 567777777777663211 0 11222334456666665542 37889999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc
Q 016155 193 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 270 (394)
Q Consensus 193 G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el 270 (394)
| ..|+++|....++..|+-.|.... ..++.++.||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 4 369999999999877775553211 12478899997664
Q ss_pred cCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 016155 271 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 317 (394)
Q Consensus 271 y~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN-~GP 317 (394)
+. ....||.|+...-....+ ..+.+.||+||++|- +++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 43 357899998877665543 346778999999996 553
No 139
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.44 E-value=9.8e-07 Score=92.17 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=78.9
Q ss_pred HHHHHHhhCCCCCCC-CCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 156 ILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 156 Il~~L~~~~p~~~~~-~~~~VLvpGCGlGRLa~eLA~~G------f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
|...|.+........ +...|||+|||+|-|+...++.| ..|.|+|-+..+..+.+.+++. +.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~----n~------- 238 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA----NG------- 238 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH----TT-------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh----cC-------
Confidence 334555554432111 35789999999999998888776 6899999998777655433221 11
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHh
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRI 305 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~ 305 (394)
..+.+.++.||++++.. .++.|+||+= .|++.. -..+.|....|.
T Consensus 239 ---------------------------w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~rf 286 (448)
T PF05185_consen 239 ---------------------------WGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADRF 286 (448)
T ss_dssp ---------------------------TTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGGG
T ss_pred ---------------------------CCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHhh
Confidence 12348899999999865 3689999987 477765 466789999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||+.|
T Consensus 287 Lkp~Gi~I 294 (448)
T PF05185_consen 287 LKPDGIMI 294 (448)
T ss_dssp EEEEEEEE
T ss_pred cCCCCEEe
Confidence 99999999
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.44 E-value=1e-06 Score=83.08 Aligned_cols=111 Identities=26% Similarity=0.304 Sum_probs=81.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|-+.. +..+||++|+|+|.-+..||.. +-.++.+|.+..+...|+-.+..+.
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--------------- 94 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--------------- 94 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---------------
Confidence 555555543 4669999999999999999975 5699999999999987775543321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
..++++++.||..++... ....++||+| |||.. .+-.+|++.+.++|+|
T Consensus 95 -----------------------~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 95 -----------------------LDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp -----------------------GGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred -----------------------CCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 123488899999875320 1123689998 78866 4577899999999999
Q ss_pred CcEEEE
Q 016155 309 GGVWIN 314 (394)
Q Consensus 309 GG~wIN 314 (394)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
No 141
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1e-05 Score=78.18 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=116.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccc-------cCCCCcccCc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 241 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~-------sn~~~~~~ql 241 (394)
.+..+||+||-.|.|+..||+. | -.+.|+|+....+-.|+.-+.+-......+.--|++++ |+ .+..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 5678999999999999999988 4 35899999999987776443321110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-----ccCC-hhhHHHHHHHHHHhccCCcEEEEe
Q 016155 242 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----FIDT-AHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 242 r~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-----FlDt-a~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
-...+||-. .-...|..+...||++.- ...||+|++.- .|.- -+.+..+|+.|+++|.|||++| +
T Consensus 137 ~t~~~p~n~---~f~~~n~vle~~dfl~~~-----~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNV---WFQKENYVLESDDFLDMI-----QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcch---hcccccEEEecchhhhhc-----cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 122233211 012345677777787542 47899998652 3543 3559999999999999999999 5
Q ss_pred cCcchh-hhhc------cCCCCCccccCCHHHHHHHHHh--CCCEEEEEee-ccccCCCCcccccccccceEEEEEEEcC
Q 016155 316 GPLLYH-FADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEKT-IETTYTTNPRSMMQNRYFTAFWTMRKKS 385 (394)
Q Consensus 316 GPLlyh-~~~~------~g~~~~~~ieLS~eEl~~ll~~--~GF~ii~e~~-i~~~Y~~d~~sm~~~~Y~~~f~va~K~~ 385 (394)
-|--|. |... .. .....+.|.+|....++.+ .||+-.+... +.+.|.+ .+.....+-+|+.
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk--------gf~R~i~~y~Kk~ 278 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK--------GFDRPILLYRKKL 278 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc--------cccceeeeeeccC
Confidence 666554 2211 01 1113578899999998885 4777665442 4444432 3344445556654
Q ss_pred c
Q 016155 386 V 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 279 ~ 279 (288)
T KOG2899|consen 279 H 279 (288)
T ss_pred C
Confidence 3
No 142
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.4e-06 Score=81.16 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+..|||+|||||+|+.-.+.+| ..|.|+|+...++.+++-..+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------------------------------
Confidence 56689999999999999999999 7899999999999877622110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 327 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g 327 (394)
...++.|+.+|..++. ..||.|+++ |=+..-.--..++....++- - ..|....
T Consensus 91 ------l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~------vVYsiH~--- 145 (198)
T COG2263 91 ------LLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHADRPFLLKALEIS----D------VVYSIHK--- 145 (198)
T ss_pred ------hCCceEEEEcchhhcC------CccceEEECCCCccccccCCHHHHHHHHHhh----h------eEEEeec---
Confidence 1234889999988764 578888776 31111000112222222211 1 1232111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe----eccccCC
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYT 363 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~----~i~~~Y~ 363 (394)
--+.+-+++.....||++.... .++..|.
T Consensus 146 -------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~ 178 (198)
T COG2263 146 -------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYP 178 (198)
T ss_pred -------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence 1288899999999999988743 3444554
No 143
>PLN02476 O-methyltransferase
Probab=98.40 E-value=2.7e-06 Score=83.86 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|.+.. +..+||++|+|+|.-+..+|.. +-.|+++|.+..++..|+-.+..+
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4679999999999999999973 346999999999987776433221
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 308 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKp 308 (394)
....++.++.||+.++... ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998875320 0113689977 78876 4577999999999999
Q ss_pred CcEEEEecCcchh
Q 016155 309 GGVWINLGPLLYH 321 (394)
Q Consensus 309 GG~wIN~GPLlyh 321 (394)
||++|- ...+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999883 335564
No 144
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.40 E-value=7.8e-06 Score=77.71 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=99.1
Q ss_pred chHHHHHHHHhhCCCC-CCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccc
Q 016155 152 CYKPILEELDALFPNR-SKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 229 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~-~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~ 229 (394)
+-..++++|....-.. ..+.+.++|++||=....+.. ..+ |+|+.+|+.. .
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-~------------------------ 83 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-Q------------------------ 83 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC-C------------------------
Confidence 3345778887765322 122458999999965554332 233 5788888754 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 230 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 230 ~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
.-.+.+.||.+...+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 84 -----------------------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 84 -----------------------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred -----------------------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 01346789998643334578999998775 7778888889999999999
Q ss_pred cCCcE-----EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 307 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 307 KpGG~-----wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||+|. +.-+-|+--+- .+.-++.+-+..+++.+||..++.+
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv~---------NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCVT---------NSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCCccCcceEEEEeCchHhh---------cccccCHHHHHHHHHhCCcEEEEEE
Confidence 99999 66666664431 1457899999999999999999865
No 145
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=8.3e-06 Score=80.29 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=82.1
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|||+|-+|..||+.+- .|+|+|+|...|.+|+--... + .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~----~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER----N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 799999999999999999985 899999999999877621110 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHhc
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 306 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-FlDta------------------------~ni~~yl~~I~~~L 306 (394)
. .++.++.+|.++-. .++||+||++= ||... .-+...+..+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445555654422 35899988772 44332 12345677788999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEE
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 354 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~G-F~ii~ 354 (394)
+|||+++- .+ | .-..+.+++++.+.| |..+.
T Consensus 229 ~~~g~l~l-----e~-----g-------~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLIL-----EI-----G-------LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEE-----EE-----C-------CCcHHHHHHHHHhcCCceEEE
Confidence 99998883 00 0 114688999999999 55444
No 146
>PRK04148 hypothetical protein; Provisional
Probab=98.39 E-value=3.1e-06 Score=74.97 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGR-La~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.|-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|++...+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 3667788877654 45799999999996 99999999999999999998764222 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
..+..+.+|.++--. .-.+.+|+|.+ |-..+.+..++-.+++-+.
T Consensus 58 ------------------------~~~~~v~dDlf~p~~--~~y~~a~liys---irpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPNL--EIYKNAKLIYS---IRPPRDLQPFILELAKKIN 102 (134)
T ss_pred ------------------------hCCeEEECcCCCCCH--HHHhcCCEEEE---eCCCHHHHHHHHHHHHHcC
Confidence 013456677665211 12356898877 6777888888888887664
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=2.3e-06 Score=88.95 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+.+. .
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g---- 286 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------K---- 286 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999886 578999999999996655322210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e--c-ccCChh---------hH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C--F-FIDTAH---------NI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT---~--f-FlDta~---------ni-------~~yl~~I~~~ 305 (394)
. .++.+..+|..++.. ...++||.|+. | + .+..-+ ++ .+.|+.+++.
T Consensus 287 --------~-~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 287 --------L-SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred --------C-CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 126778888776531 12467999984 2 1 122111 22 4568999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
No 148
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.33 E-value=4.1e-06 Score=87.05 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... +
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g---- 299 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------G---- 299 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5678999999999999999986 358999999999996655322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccC---------ChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---f---FlD---------ta~ni-------~~yl~~I~~~ 305 (394)
. .++.++.+|+.++.. +. .++||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 300 --------~-~~v~~~~~D~~~~~~-~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 300 --------L-TNIETKALDARKVHE-KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred --------C-CeEEEEeCCcccccc-hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 126788899877531 11 2689999852 1 111 11222 3579999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.30 E-value=9e-06 Score=83.98 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=72.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|.|..|+..++.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 344555544421 1456899999999999999999999999999999999766632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-h-HHHHHHHHHHhccCCcE
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-N-IVEYIEIISRILKDGGV 311 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~-n-i~~yl~~I~~~LKpGG~ 311 (394)
. -.++.++.||+.++.. .+...+.||+|+ +|.+. . ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0247889999876321 111235799886 35432 1 2355565554 888876
Q ss_pred EE
Q 016155 312 WI 313 (394)
Q Consensus 312 wI 313 (394)
..
T Consensus 392 vy 393 (431)
T TIGR00479 392 VY 393 (431)
T ss_pred EE
Confidence 43
No 150
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.29 E-value=5.8e-06 Score=82.20 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|||+|||+|.++..||.+|..|+|+|+|..|+..++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 3468999999999999999999999999999999997665
No 151
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.27 E-value=7.4e-06 Score=79.22 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.+.. .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999986544
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.26 E-value=7.1e-06 Score=85.27 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999777632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-hHHHHHHHHHHhccCCcEE-EEecCcchhhhhccC
Q 016155 251 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGVW-INLGPLLYHFADLYG 327 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~-~~~~~~~fD~VvT~fFlDta~-ni~~yl~~I~~~LKpGG~w-IN~GPLlyh~~~~~g 327 (394)
-.++.+..+|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++. |-..|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0137889999876321 1122467999964 4331 24456666666 5776653 44444321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 328 QEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 328 ~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
.-|+..+ .+.||++.+..
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~ 423 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAG 423 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEE
Confidence 1234333 36799999865
No 153
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-05 Score=78.35 Aligned_cols=147 Identities=21% Similarity=0.206 Sum_probs=99.9
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cC--CeEEEEeCCHHHHHHHhhhhhcccccccccccc
Q 016155 150 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYP 226 (394)
Q Consensus 150 ~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~-~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P 226 (394)
+..|++=+.+|-.... -+++.+||+.|.|.|.|+..||. .| -+|+..|+-..++..|+.-++..
T Consensus 76 QiIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---------- 142 (256)
T COG2519 76 QIIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---------- 142 (256)
T ss_pred ceecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh----------
Confidence 3455555555555443 23788999999999999999995 33 37999999999998777444321
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 016155 227 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 227 fi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~L 306 (394)
...+++.+..||+.+... .+.||+| |||.. +.-++++.++++|
T Consensus 143 ----------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~L 185 (256)
T COG2519 143 ----------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDAL 185 (256)
T ss_pred ----------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHh
Confidence 112236677799887543 3489988 56765 5789999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccC
Q 016155 307 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTY 362 (394)
Q Consensus 307 KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y 362 (394)
||||.++-+-|-.- -.+.+...+++.||..++ .+.+...|
T Consensus 186 kpgg~~~~y~P~ve----------------Qv~kt~~~l~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 186 KPGGVVVVYSPTVE----------------QVEKTVEALRERGFVDIEAVETLVRRW 226 (256)
T ss_pred CCCcEEEEEcCCHH----------------HHHHHHHHHHhcCccchhhheeeehee
Confidence 99999997655321 123333455566898766 34444444
No 154
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=9.8e-06 Score=80.42 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=79.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCC
Q 016155 157 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 234 (394)
Q Consensus 157 l~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~ 234 (394)
.+.|.+.+|.. ...+|||+|||.|-|+..||+.. -.++=+|.|+..+..|+.-+.. +.
T Consensus 147 S~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~------------- 206 (300)
T COG2813 147 SRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG------------- 206 (300)
T ss_pred HHHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC-------------
Confidence 35566666644 34599999999999999999997 4899999999999888743311 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhhHH-HHHHHHHHhccCC
Q 016155 235 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNIV-EYIEIISRILKDG 309 (394)
Q Consensus 235 ~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fF--lDta~ni~-~yl~~I~~~LKpG 309 (394)
.++..+...| +|.. ..++||+|+|+ |. .++..++. +.|+...+.||+|
T Consensus 207 ----------------------~~~~~v~~s~---~~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 207 ----------------------VENTEVWASN---LYEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred ----------------------CCccEEEEec---cccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 0111234444 3331 23599999999 65 44544433 7899999999999
Q ss_pred cEEEE--ecCcch
Q 016155 310 GVWIN--LGPLLY 320 (394)
Q Consensus 310 G~wIN--~GPLly 320 (394)
|.+-- .|.|-|
T Consensus 260 GeL~iVan~~l~y 272 (300)
T COG2813 260 GELWIVANRHLPY 272 (300)
T ss_pred CEEEEEEcCCCCh
Confidence 97632 255544
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.25 E-value=8.3e-06 Score=76.57 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~ 210 (394)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866666 58999999999986655
No 156
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.23 E-value=8e-06 Score=79.32 Aligned_cols=101 Identities=26% Similarity=0.169 Sum_probs=68.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||.|..+..||.+ +-.|+|+|.|..|+..++..++.. .+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999996555332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---cc---------CChhhH-------HHHHHHHHHh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FI---------DTAHNI-------VEYIEIISRI 305 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---f---Fl---------Dta~ni-------~~yl~~I~~~ 305 (394)
.++.++.+|...+.. ..+.||+|+.- . .+ .+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125667777665421 23569998742 1 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999987
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.22 E-value=9.4e-06 Score=78.70 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=84.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhcccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 232 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~s 232 (394)
++..|-+.. +..+||++|.++|.=+..||.. +-.++.+|.+..+...|+-.+..+
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666554 4569999999999999988864 458999999999987776544321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CC--CCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 016155 233 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 307 (394)
Q Consensus 233 n~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~--~~--~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LK 307 (394)
...+++.++.||+.++... +. ..++||+| |||.. .+-.+|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123488899999885321 00 13689988 77865 446689999999999
Q ss_pred CCcEEEEecCcchh
Q 016155 308 DGGVWINLGPLLYH 321 (394)
Q Consensus 308 pGG~wIN~GPLlyh 321 (394)
|||++| +...+|+
T Consensus 182 ~GGviv-~DNvl~~ 194 (247)
T PLN02589 182 VGGVIG-YDNTLWN 194 (247)
T ss_pred CCeEEE-EcCCCCC
Confidence 999988 3345664
No 158
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.20 E-value=7.9e-06 Score=81.71 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=84.6
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh
Q 016155 142 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 212 (394)
Q Consensus 142 S~eg~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi 212 (394)
...|.+.|+.+ -.+|...|-+.+- ++...||++|||-|.-..-.-+.|. ...|+|++..-+--++--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 34677777642 2333344444442 2566899999999999888777775 578999998766433321
Q ss_pred hhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec
Q 016155 213 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF 287 (394)
Q Consensus 213 ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~e-----ly~~~~~~~~fD~VvT~f 287 (394)
.+... .+.+ ...|+ ..|++||-+. ++ ++.+.+||+|-|-|
T Consensus 160 Yrdm~------------------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~--e~~dp~fDivScQF 204 (389)
T KOG1975|consen 160 YRDMK------------------NRFK---KFIFT------------AVFIAADCFKERLMDLL--EFKDPRFDIVSCQF 204 (389)
T ss_pred HHHHH------------------hhhh---cccce------------eEEEEeccchhHHHHhc--cCCCCCcceeeeee
Confidence 11000 0000 01111 4567776542 22 22344599987666
Q ss_pred c----cCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 288 F----IDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 288 F----lDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
. ..|.+-..-.++.+.++|||||+||..-|
T Consensus 205 ~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 205 AFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 3 45666788899999999999999996444
No 159
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.20 E-value=4.6e-06 Score=78.19 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~---------G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ 239 (394)
...+|+..||++|--++-||.. + +.+.|.|+|..+|..|+-- +||--. ..+. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G-----------~Y~~~~-~~~~-~-~~ 96 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG-----------IYPERS-LRGL-P-PA 96 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT-----------EEEGGG-GTTS---HH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC-----------CCCHHH-Hhhh-H-HH
Confidence 5789999999999877766543 3 6889999999999776621 222000 0000 0 00
Q ss_pred Ccccccc-CCCC-CC--CCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 016155 240 QLRPVSI-PDIH-PA--SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 240 qlr~v~i-PDv~-p~--~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
.++. -| +... .. .......+.|...|..+.+ ...+.||+|++-. |+|.. ...+.++.+++.|+|||++
T Consensus 97 ~~~r-yf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 97 YLRR-YFTERDGGGYRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHH-HEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHH-hccccCCCceeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000 00 0000 00 0012345899999988822 2358999998763 44543 3578999999999999999
Q ss_pred E
Q 016155 313 I 313 (394)
Q Consensus 313 I 313 (394)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 9
No 160
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.17 E-value=7.8e-06 Score=84.82 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+|||+|||.|..+..||++. -.|+|+|.|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 47999999999996655322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEE---ec---cc---------CChhh-------HHHHHHHHHH
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF---FI---------DTAHN-------IVEYIEIISR 304 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT---~f---Fl---------Dta~n-------i~~yl~~I~~ 304 (394)
.++.++.+|+.++... +...++||+|+. |. .+ .+..+ ..+.|+.+.+
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1367788888765310 012468999984 11 01 11122 2467999999
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhC-CCEEE
Q 016155 305 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFE 353 (394)
Q Consensus 305 ~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~-GF~ii 353 (394)
+|||||++|-..-.++. +=+.+.+..++++. +|+++
T Consensus 373 ~lkpgG~lvystcsi~~-------------~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 373 LLKPGGTLVYATCTLHP-------------AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred hcCCCCEEEEEeCCCCh-------------hhHHHHHHHHHHhCCCcEec
Confidence 99999999821101110 11345666777665 68755
No 161
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.16 E-value=5.2e-05 Score=73.24 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|-|.|.++.++.+.. -.++.+|++..++.+++.-+..... .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~------------~----------------- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE------------G----------------- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT------------T-----------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc------------c-----------------
Confidence 56799999999999999999886 5799999999999776633221100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCC-CccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~-~fD~VvT~fFlD--ta~n--i~~yl~~I~~~LKpGG~wIN 314 (394)
....+++++.+|...+-. ...+ +||+|+.-.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 011348889999887543 1234 899998655432 2222 24899999999999999984
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.15 E-value=9.9e-06 Score=81.79 Aligned_cols=141 Identities=20% Similarity=0.166 Sum_probs=93.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
+..|.++...-++.. .+.+..||||=||||.+..|....|..|.|+|++..|+.-++--|++
T Consensus 180 s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~---------------- 241 (347)
T COG1041 180 SMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY---------------- 241 (347)
T ss_pred CcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------
Confidence 455666666555432 23677999999999999999999999999999999999765522211
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-cCC----h--hh-HHHHHHHH
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-IDT----A--HN-IVEYIEII 302 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-F-lDt----a--~n-i~~yl~~I 302 (394)
+.+++. ..+..+|++.+. ..++++|+|+|=- | .-+ . .. ..+.|+++
T Consensus 242 ------------y~i~~~----------~~~~~~Da~~lp---l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 242 ------------YGIEDY----------PVLKVLDATNLP---LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred ------------hCcCce----------eEEEecccccCC---CCCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 111111 123333777764 3355799999862 2 111 1 12 45789999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 303 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 303 ~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..+||+||+++-..|. . .. ..++..||+++..-
T Consensus 297 ~evLk~gG~~vf~~p~----~-------------~~----~~~~~~~f~v~~~~ 329 (347)
T COG1041 297 SEVLKPGGRIVFAAPR----D-------------PR----HELEELGFKVLGRF 329 (347)
T ss_pred HHHhhcCcEEEEecCC----c-------------ch----hhHhhcCceEEEEE
Confidence 9999999999854440 0 11 23457899998854
No 163
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.15 E-value=1.7e-05 Score=73.62 Aligned_cols=40 Identities=20% Similarity=-0.057 Sum_probs=35.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~ 210 (394)
.+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 356899999999999999999997 7999999999986554
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.13 E-value=1.6e-05 Score=77.58 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25678999999999999999999999999999999986543
No 165
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=3.6e-05 Score=72.94 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+...+.+.+.. +++.+||++|||+|..+.-||+++-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887666533321
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 314 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN- 314 (394)
. . -.|+.+.+||-..=+. ....||.|+..--.++.+ +.+...|||||++|-
T Consensus 117 --------l----------g-~~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------L----------G-YENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------c----------C-CCceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 0 1 1237889999765443 358899886443333332 345678999999996
Q ss_pred ec
Q 016155 315 LG 316 (394)
Q Consensus 315 ~G 316 (394)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 45
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.12 E-value=2e-05 Score=78.20 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCC
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 235 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~ 235 (394)
+++.+-+.... .++.+||++|||+|.|+..|+.++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44444444332 25679999999999999999999999999999999996555221100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 016155 236 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 292 (394)
Q Consensus 236 ~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta 292 (394)
....++.++.+|++++.. ..||+||.+ |+|.+.
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istp 116 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSP 116 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcH
Confidence 001247899999988642 468998876 566664
No 167
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.10 E-value=2.2e-05 Score=81.22 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~f 211 (394)
++.+|||+|||.|..+..+|++ +-.|+|+|+|..|+..++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999976653
No 168
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.07 E-value=3e-06 Score=88.81 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=90.2
Q ss_pred HHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHhhhhhccccccccccccccccc
Q 016155 156 ILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 231 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~-~~VLvpGCGlGRLa~eLA~~Gf~v~G~---D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~ 231 (394)
-++.|.+.+|....... ..+||+|||+|.++..|..+|.-+..+ |-....+ +|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qv---qfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQV---QFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhh---hhhhh-----------------
Confidence 56677777775211123 467999999999999999999654322 1111111 11111
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-cCChhhHHHHHHHHHHhccCCc
Q 016155 232 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGG 310 (394)
Q Consensus 232 sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF-lDta~ni~~yl~~I~~~LKpGG 310 (394)
|+ +|.+- . +.|. ..+|+.++.||+|=+.-. +.=..+---||-+|.|+|+|||
T Consensus 161 ----------RG--vpa~~----------~-~~~s----~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RG--VPAMI----------G-VLGS----QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cC--cchhh----------h-hhcc----ccccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 12 12110 0 1112 123556899999976644 3222222358999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 311 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 311 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
+||--||..|.-.+ ...+-.+++|..+.+++-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99998988871111 1223467888899999999888755
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.07 E-value=2.5e-05 Score=75.80 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred hcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHhhhhhc
Q 016155 139 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 139 RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~filn~ 215 (394)
.+|..-=...-+..|++=+..|-..+.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3566544444567888878887776643 37899999999999999999975 2 2899999999998766522211
Q ss_pred cccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhH
Q 016155 216 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 295 (394)
Q Consensus 216 ~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni 295 (394)
+ ...+++.+..+|..+--......+.+|+| |||.. +.
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav----fLDlp-~P 124 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFDEELESDFDAV----FLDLP-DP 124 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--STT-TTSEEEE----EEESS-SG
T ss_pred ------c--------------------------------CCCCCceeEecceecccccccccCcccEE----EEeCC-CH
Confidence 0 11235788888875421111123678887 67764 46
Q ss_pred HHHHHHHHHhc-cCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeeccccCC
Q 016155 296 VEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYT 363 (394)
Q Consensus 296 ~~yl~~I~~~L-KpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~i~~~Y~ 363 (394)
-++|..+.++| ||||++..+-|-.- -...+.+.|++.||..++ .+.+...|.
T Consensus 125 w~~i~~~~~~L~~~gG~i~~fsP~ie----------------Qv~~~~~~L~~~gf~~i~~~Evl~R~~~ 178 (247)
T PF08704_consen 125 WEAIPHAKRALKKPGGRICCFSPCIE----------------QVQKTVEALREHGFTDIETVEVLLREWE 178 (247)
T ss_dssp GGGHHHHHHHE-EEEEEEEEEESSHH----------------HHHHHHHHHHHTTEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCHH----------------HHHHHHHHHHHCCCeeeEEEEEEeeEEE
Confidence 68999999999 99999998766421 123344556678998876 333333443
No 170
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.06 E-value=1.3e-05 Score=74.93 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=66.7
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..-+|++|||.|+...++|++ +..+.|+|.+..-+..+. +.+.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~------------------------------ 64 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR------------------------------ 64 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH------------------------------
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh------------------------------
Confidence 348999999999999999998 688999999998774332 111110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh---HHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN---IVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt------a~n---i~~yl~~I~~~LKpGG~wI 313 (394)
.-.|+.++.+|+..+...-..++++|.|.-.| =|. ... =.++++.++++|||||.+-
T Consensus 65 ------~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 65 ------GLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ------TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred ------cccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 01358889999877322112357888886655 221 111 1268999999999999875
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.04 E-value=2e-05 Score=79.47 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+.+.|||+|||||-|+..-|+.|. .|.|+|.|.-+ ..++-+.+. +.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999997 69999999866 444433321 111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+-+.++.|...++. +| .++.|+||+-+ ||=-..=+..+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi~-LP--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIE-LP--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEe-cC--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 112677888888874 34 58899999874 33222113344555568999999986
No 172
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.03 E-value=2.9e-05 Score=76.85 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHhhhhhcccccccccccc----------cccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP----------WIHS 230 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P----------fi~~ 230 (394)
...+|+..||.+|--++-||.. .+.+.|.|+|..+|..|+- .+|| |...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999987777654 3689999999999976652 2233 0000
Q ss_pred ccCCC-CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 016155 231 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 306 (394)
Q Consensus 231 ~sn~~-~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~L 306 (394)
+=... ...+ ..+.+ .+ .....+.|...|..+... | ..+.||+|++.. |++. +...+.++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00011 00 123458899988876211 1 247899999742 4444 45778999999999
Q ss_pred cCCcEEE
Q 016155 307 KDGGVWI 313 (394)
Q Consensus 307 KpGG~wI 313 (394)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999877
No 173
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=8.2e-05 Score=71.40 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~ 207 (394)
++..|||+|||+|.++..|+++|. .|+|+|+|..||.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 567899999999999999999986 6999999999885
No 174
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.02 E-value=0.00015 Score=71.83 Aligned_cols=247 Identities=14% Similarity=0.108 Sum_probs=139.5
Q ss_pred ccCcccccccCCcccCCCCCCCccccchHHHhhhh-----cccccccCCCCCCCCCCCCCCcCCCCCCcchHHHH--HHH
Q 016155 62 MTTNEEEETEGPIEYKTASCPGKLENREETNQSCS-----NDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVR--CII 134 (394)
Q Consensus 62 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~kv~--~~L 134 (394)
|.|-+|-++....-...+....+..+-+.-++.++ ..++.+.|..|.+.-||.=-.- .+- ..-+.|+. .=|
T Consensus 27 g~s~~e~~~L~~pl~~~s~~~l~~~~~r~~m~~~g~lS~Gi~lG~~tGFDSGstLDYVYrN~-p~G-~~~~GrliDr~yL 104 (311)
T PF12147_consen 27 GFSRDEAERLATPLPPNSPKGLYWRFQRASMRTGGRLSEGIRLGLETGFDSGSTLDYVYRNQ-PQG-KGPLGRLIDRNYL 104 (311)
T ss_pred CCCHHHHHHhcCCCCCCCHHHhHHHHHHHHHHhccccccceeechhcCCCCcchHhHHhcCC-CCC-cchHHHHHHHhhh
Confidence 44555555554443333444455555565555554 4566788888777767654331 000 11112211 011
Q ss_pred HHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHh
Q 016155 135 RNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSS 210 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G----f~v~G~D~S~~ML~~s~ 210 (394)
..+- | .|-..|+.....+|..--..+... ..+.+|||+.||.||..++..... -.|.-+|+|..-+...+
T Consensus 105 naiG--W--rGIR~Rk~~l~~~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 105 NAIG--W--RGIRQRKVHLEELIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred cccc--h--HHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 1111 3 466677664333333222222211 267899999999999999986653 35789999998887766
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-c--
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-F-- 287 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-f-- 287 (394)
-++..- . ..+-++|..+|.++......-.-..++++.+ .
T Consensus 179 ~li~~~--------------------------g------------L~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 179 ALIAER--------------------------G------------LEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE 220 (311)
T ss_pred HHHHHc--------------------------C------------CccceEEEecCCCCHhHhhccCCCCCEEEEecchh
Confidence 554210 0 1112488899987742211122345665544 2
Q ss_pred -ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-----cC--CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 016155 288 -FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL-----YG--QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 288 -FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~-----~g--~~~~~~i--eLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|-|. .-+..-|.-++.+|.|||++|--| --||-... .. .....++ .-|..|+.+|++++||+-+...
T Consensus 221 lF~Dn-~lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 221 LFPDN-DLVRRSLAGLARALEPGGYLIYTG-QPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred hCCcH-HHHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhhe
Confidence 4343 336678999999999999999543 22443221 00 0001122 3499999999999999855543
No 175
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.01 E-value=4.3e-05 Score=77.99 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+.+|||+|||+|.++.++|.+|..|+|+|.|..++..++.-+.. +
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~------------------------------- 278 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L------------------------------- 278 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c-------------------------------
Confidence 45899999999999999999999999999999999776622210 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 328 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n--i~~yl~~I~~~LKpGG~wIN-~GPLlyh~~~~~g~ 328 (394)
.. .++.+..+|+.++.. ...++||+|+. |.+.. ..+.++.|.+ ++|+++..- ..|-.
T Consensus 279 ---~~-~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 279 ---GL-DNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred ---CC-CcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 00 137889999876432 11246998864 44322 2244555543 788776542 23321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
=..|+..+ .||++.+..
T Consensus 339 --------laRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred --------HHHHHHHh---cCceEEEEE
Confidence 13455555 599999865
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.99 E-value=5.1e-05 Score=72.46 Aligned_cols=99 Identities=25% Similarity=0.310 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
+..+||++|.++|.=+..+|.. | .++.+|+...|...|+-.+..+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag----------------------------- 108 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAG----------------------------- 108 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Confidence 5679999999999999888765 4 79999999999987775543321
Q ss_pred CCCCCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 016155 247 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~-GDf~ely~~~~~~~~fD~VvT~fFlDta-~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.+.++. ||.+++... ...++||+| |||.+ .+-.+|++.+.++|+|||+.|
T Consensus 109 ---------~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 109 ---------VDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred ---------CcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 112356677 688886541 235899998 78876 445689999999999999999
No 177
>PLN02823 spermine synthase
Probab=97.97 E-value=4.7e-05 Score=76.99 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|+|.|.++.++.+.. -.|+.+|++..++..++--+ |+.+ +.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~~-------------- 153 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---EA-------------- 153 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---cc--------------
Confidence 45689999999999999998853 46999999999997665221 1100 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 317 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt-----a~ni--~~yl~-~I~~~LKpGG~wI-N~GP 317 (394)
-...++.++.+|.+..-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ |.++
T Consensus 154 ------~~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 154 ------FCDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ------ccCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 001347889999887533 24578999986533 21 1111 36787 8999999999997 4444
No 178
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.92 E-value=3.2e-05 Score=71.15 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCccc
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI-----------SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 239 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~-----------v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~ 239 (394)
++..||||=||+|.+..|-|..+.. +.|.|++..|+..|+-.+..+.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---------------------- 85 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---------------------- 85 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----------------------
Confidence 5678999999999999999988765 4599999999987774432210
Q ss_pred CccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHH----HHHHHHHHhccCCcE
Q 016155 240 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIV----EYIEIISRILKDGGV 311 (394)
Q Consensus 240 qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--f--FlDta~ni~----~yl~~I~~~LKpGG~ 311 (394)
....+.+..+||.++.. ..+.+|+|||. | -+.+..++. ++++.+.++|++..+
T Consensus 86 ----------------~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 86 ----------------VEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp -----------------CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ----------------cCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 11237889999999862 35799999999 3 233333233 357888899999666
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
||-.+ ..++.+++...+++..+..
T Consensus 147 ~l~~~---------------------~~~~~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 147 FLTTS---------------------NRELEKALGLKGWRKRKLY 170 (179)
T ss_dssp EEEES---------------------CCCHHHHHTSTTSEEEEEE
T ss_pred EEEEC---------------------CHHHHHHhcchhhceEEEE
Confidence 65311 1233455666677777655
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.90 E-value=0.00013 Score=70.30 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+++.+.+..... ++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 555555544322 5679999999999999999999999999999999986544
No 180
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.90 E-value=0.00015 Score=57.46 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 175 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 175 VLvpGCGlGRLa--~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
||++|||+|+.. ..+...+..++|+|++..|+..++..... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-------------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A-------------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-------------------------CC--------
Confidence 999999999954 44444456899999999998652211000 0 00
Q ss_pred CCCCCCceeEEeccccc-ccCCCCCC-CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 253 SAGITEGFSMCGGDFVE-VYSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~e-ly~~~~~~-~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..+.+..+|... ... ... ..||++.....+.... ....+..+.++|||||.++..
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 003455566554 122 223 4799983332222222 678999999999999999853
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.90 E-value=0.00011 Score=69.78 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+..+|||+|+|.|.++..|+++ +-+++..|+ +.++..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4568999999999999999988 577888888 54542111 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC--cEEEEecCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINLGPL 318 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpG--G~wIN~GPL 318 (394)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |++|-+.++
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 134899999998532 2 3 99998776653 5566889999999999999 999865443
No 182
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.87 E-value=0.00038 Score=69.99 Aligned_cols=141 Identities=9% Similarity=-0.015 Sum_probs=79.2
Q ss_pred HHHHHHHHHhh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEe
Q 016155 129 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNE 200 (394)
Q Consensus 129 kv~~~L~q~~R--DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eL------A~~Gf~v~G~D 200 (394)
+=.....++++ +|- .-+.|.+ .+..-...|.+.++ ++..|+++|||.||-+.-| +..+..-.++|
T Consensus 39 ~Gs~LFe~It~lpEYY-ptr~E~~-iL~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plD 111 (319)
T TIGR03439 39 EGLKLFEEITYSPEYY-LTNDEIE-ILKKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALD 111 (319)
T ss_pred hHHHHHHHHHcCCccC-ChHHHHH-HHHHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEE
Confidence 34445666664 222 1233332 33444455555665 4458999999999984432 22356788999
Q ss_pred CCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC--CC
Q 016155 201 FSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QV 277 (394)
Q Consensus 201 ~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~-~~~--~~ 277 (394)
+|..+|..+.--+ ++-.+|.+. +.-+.|||.+... .+. ..
T Consensus 112 IS~~~L~~a~~~L----------------------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 112 VSRSELQRTLAEL----------------------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCHHHHHHHHHhh----------------------------hhccCCCeE---------EEEEEecHHHHHhhccccccc
Confidence 9999996443211 111223321 3447788866321 111 12
Q ss_pred CCccEEEEe---cccCChhhHHHHHHHHHH-hccCCcEEE
Q 016155 278 GAWDAVVTC---FFIDTAHNIVEYIEIISR-ILKDGGVWI 313 (394)
Q Consensus 278 ~~fD~VvT~---fFlDta~ni~~yl~~I~~-~LKpGG~wI 313 (394)
....+|+-. +-=-+.+....+|+.|++ .|+|||.++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 334444421 111133457789999999 999999887
No 183
>PRK00536 speE spermidine synthase; Provisional
Probab=97.81 E-value=0.00016 Score=70.78 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+||++|-|-|..++|+.+.--+|+-+|+...++.+++-- +|.++. . .+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~------------lP~~~~---~--~~------------ 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF------------FPHFHE---V--KN------------ 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH------------CHHHHH---h--hc------------
Confidence 678999999999999999999866999999999999766621 232221 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++. .+.+ ...++||+|+.=- .. -.++++.++++|+|||+++.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 11244443 1221 1237899998531 11 14788999999999999997
No 184
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.80 E-value=0.00014 Score=71.52 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=71.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHhhh--hhcccccccccc
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFI--LNHTETAGEWNI 224 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~---------~Gf~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i 224 (394)
|.+.+.+.+... ++.+||||+||+|.+..++.+ ....+.|+|++..++..+..- +....
T Consensus 34 i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~------- 103 (311)
T PF02384_consen 34 IVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID------- 103 (311)
T ss_dssp HHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-------
T ss_pred HHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-------
Confidence 556666655432 566899999999999888776 467899999999998666522 11100
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC------------
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------ 290 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlD------------ 290 (394)
..++.+..+|.+.-... .....||+|+++ |-..
T Consensus 104 --------------------------------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~ 150 (311)
T PF02384_consen 104 --------------------------------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDER 150 (311)
T ss_dssp --------------------------------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred --------------------------------ccccccccccccccccc-ccccccccccCCCCcccccccccccccccc
Confidence 01134566676543221 114678988877 2111
Q ss_pred -------ChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 291 -------TAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 291 -------ta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
....-..++..+.+.||+||+.+-+-|-
T Consensus 151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 1111235889999999999998765553
No 185
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00027 Score=69.91 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+||++|-|.|..++++.+.. -+++.+|+...++..|+.-+-.. ++. .+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~---------------~~~------------~~- 128 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP---------------SGG------------AD- 128 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc---------------ccc------------cC-
Confidence 3599999999999999999998 68999999999997776332110 000 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fF--lDta~ni--~~yl~~I~~~LKpGG~wIN 314 (394)
..++.++.+|-.++-. ...++||+|+.--+ .-.++++ .++++.++++|||+|+++.
T Consensus 129 -------dpRv~i~i~Dg~~~v~--~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 129 -------DPRVEIIIDDGVEFLR--DCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred -------CCceEEEeccHHHHHH--hCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 1347788888887543 22358999985433 2233443 4799999999999999995
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.74 E-value=0.00064 Score=68.42 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
.+.+|||+|||+|-++..|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 779999999999998887543
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.67 E-value=0.00025 Score=78.02 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--------------------------------------------f~v~G~D~S~~ML 206 (394)
++..++||+||.|.++.|.|..+ ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 45789999999999999988741 2589999999999
Q ss_pred HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 016155 207 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 286 (394)
Q Consensus 207 ~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~ 286 (394)
..|+--+..+ ...+.+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 8777332210 112237889999988743 2223679999999
Q ss_pred --cc--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 016155 287 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 313 (394)
Q Consensus 287 --fF--lDta~ni~~yl~~I~~~LK---pGG~wI 313 (394)
|. +....++.+..+.+-..|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 54 3344555565555555555 776664
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.65 E-value=0.00042 Score=68.10 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHhhhhhcccccccccccc-ccccccCCCCcc
Q 016155 171 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP-WIHSNCNSLSDS 238 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-----------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~P-fi~~~sn~~~~~ 238 (394)
...+|..+||++|.-++-||.. .+.+.|.|+|..+|..|+ .-+|| -.. ..+ -.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~-~~~---~~ 160 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSREL-LRG---LP 160 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHh-hcc---CC
Confidence 4789999999999877766643 367889999999996555 23444 110 000 00
Q ss_pred cCcccc---ccCCC-CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcE
Q 016155 239 DQLRPV---SIPDI-HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGV 311 (394)
Q Consensus 239 ~qlr~v---~iPDv-~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKpGG~ 311 (394)
.+++.- ..+|- -.-+......+.|-..|..+-.. ..+.||+|++-- |+|.. --.+.++.++..|||||+
T Consensus 161 ~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 161 PELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGL 236 (268)
T ss_pred HHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCE
Confidence 000000 00000 00000123457888888765331 357899999763 45543 245789999999999999
Q ss_pred EE
Q 016155 312 WI 313 (394)
Q Consensus 312 wI 313 (394)
++
T Consensus 237 Lf 238 (268)
T COG1352 237 LF 238 (268)
T ss_pred EE
Confidence 98
No 189
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.61 E-value=0.00014 Score=74.30 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
+..++|+.|||.|....+++.-+ -.++|++.+.+-+...+-.. ..+ +++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~---~~~-------~l~-------------------- 159 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA---KKA-------YLD-------------------- 159 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH---HHH-------Hhh--------------------
Confidence 44589999999999999999986 67999999987764333111 000 011
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---------Ccch
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---------PLLY 320 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G---------PLly 320 (394)
+.-.++.+||..- |+.+++||.|-+.--.-.+++....+++|+++|||||+||..- +--+
T Consensus 160 --------~k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 160 --------NKCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred --------hhcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 1122355666553 4567999998766555567888899999999999999999621 1111
Q ss_pred hhhhcc--CCCCCccccCCHHHHHHHHHhCCCEEEE-Eee
Q 016155 321 HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEK-EKT 357 (394)
Q Consensus 321 h~~~~~--g~~~~~~ieLS~eEl~~ll~~~GF~ii~-e~~ 357 (394)
|..-.. +..+....+....++..+++..||..+. ++.
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~d 268 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKD 268 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhhhccc
Confidence 111000 0011123456888899999999998887 443
No 190
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00031 Score=66.84 Aligned_cols=124 Identities=21% Similarity=0.200 Sum_probs=82.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHhhhhhccccccccccccc
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 227 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pf 227 (394)
.|..+++.|..++- ++-+.|++|+|+|.|+.-+|.+ |-.+.|+|.=...+..|..-++.-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 46678888887653 6779999999999998888854 556689999888887665433211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 016155 228 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 307 (394)
Q Consensus 228 i~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LK 307 (394)
++-|+. .. .-....++++.||-+..+. ...+||+|..- ....+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG------Aaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG------AAASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc------cCccccHHHHHHhhc
Confidence 011111 00 0112348999999998875 36889998653 123345666677889
Q ss_pred CCcEEEE-ecCc
Q 016155 308 DGGVWIN-LGPL 318 (394)
Q Consensus 308 pGG~wIN-~GPL 318 (394)
|||.+|- .||-
T Consensus 185 ~gGrllip~~~~ 196 (237)
T KOG1661|consen 185 PGGRLLIPVGQD 196 (237)
T ss_pred cCCeEEEeeccc
Confidence 9888874 5553
No 191
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00037 Score=66.95 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...+|++|||.|+...++|++- ....|+|....-+..+ ++.+.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 4689999999999999999995 5678999987666422 2222110 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt----a~--n-i--~~yl~~I~~~LKpGG~wI 313 (394)
.|+.++.+|..++...-..+++.|-|.-+| -|. -+ . + ..+++.+.++|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 158889999887643212356889886655 231 11 1 1 168999999999999985
No 192
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.53 E-value=0.00059 Score=72.40 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G----------f~v~G~D~S~~ML~~s~fil 213 (394)
...+|||||||+|.+...++.+. -.+.|+|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45699999999999988887643 35789999999987766544
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.52 E-value=0.0012 Score=60.91 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
.+.-||++|.|||-++..|-.+|. .++++|.|.+.... ||. .+|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LYP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hCC
Confidence 677999999999999999999996 68999999988632 221 122
Q ss_pred CCCCCCCCCCCceeEEeccccccc--CCCCCCCCccEEEEec-ccCCh-hhHHHHHHHHHHhccCCcEEEE--ecCc
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-FIDTA-HNIVEYIEIISRILKDGGVWIN--LGPL 318 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely--~~~~~~~~fD~VvT~f-FlDta-~ni~~yl~~I~~~LKpGG~wIN--~GPL 318 (394)
+ ..++.||..++. ..+.....||+|+++. ++.-. .--+++|+.....|.+||.+|. +||+
T Consensus 95 ~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 G-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2 245677776654 2234467799999996 33322 2255899999999999999996 4654
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.52 E-value=0.00033 Score=69.77 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~ 210 (394)
+++++.+.+... ++..+||.+||+|..+..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 444555544322 56799999999999999999884 68999999999997665
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.47 E-value=0.00048 Score=64.91 Aligned_cols=120 Identities=20% Similarity=0.289 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFS 202 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~--~Gf~v~G~D~S 202 (394)
.|+.||- ||.-=..||+. |.+. +. ++..|||+-||.|.++.-+|+ ++-.|.++|+.
T Consensus 77 ~D~~kvy---------fs~rl~~Er~R----i~~~----v~-----~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N 134 (200)
T PF02475_consen 77 VDLSKVY---------FSPRLSTERRR----IANL----VK-----PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN 134 (200)
T ss_dssp EETTTS------------GGGHHHHHH----HHTC-----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-
T ss_pred EccceEE---------EccccHHHHHH----HHhc----CC-----cceEEEEccCCccHHHHHHhhhcCccEEEEecCC
Confidence 5666655 88766678863 3332 21 567999999999999999999 78889999999
Q ss_pred HHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccE
Q 016155 203 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDA 282 (394)
Q Consensus 203 ~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~ 282 (394)
+..+...+ ..+ +.+ ...+.+..+.||..++.. .+.||-
T Consensus 135 p~a~~~L~---~Ni-~lN----------------------------------kv~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 135 PDAVEYLK---ENI-RLN----------------------------------KVENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp HHHHHHHH---HHH-HHT----------------------------------T-TTTEEEEES-GGG-------TT-EEE
T ss_pred HHHHHHHH---HHH-HHc----------------------------------CCCCeEEEEcCCHHHhcC----ccccCE
Confidence 87764322 111 000 011337788999988743 578997
Q ss_pred EEEecccCChhhHHHHHHHHHHhccCCcEE
Q 016155 283 VVTCFFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 283 VvT~fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
|+-.. .+.-.+|+.....++|+||+.
T Consensus 173 vim~l----p~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNL----PESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE------TSSGGGGHHHHHHHEEEEEEE
T ss_pred EEECC----hHHHHHHHHHHHHHhcCCcEE
Confidence 76543 222337888899999998764
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00095 Score=65.34 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999974322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 292 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta 292 (394)
....++.++.||++.+... .. ..++.||++ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~~-~l-~~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDFP-SL-AQPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcch-hh-cCCCEEEEcCCCcccHH
Confidence 0124589999999987541 10 167888877 677764
No 197
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0011 Score=69.58 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 147 TERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 147 ~ER~~~y~pIl~~L~~~~p~~~~~~~-~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
-||-..|.-+-..|..+.. .. -++|.+|||.-+|..++-+-|| .++-+|+|..-+.+.. .-.+ +
T Consensus 28 ~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~- 93 (482)
T KOG2352|consen 28 FEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------K- 93 (482)
T ss_pred HHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------c-
Confidence 3443334444444544432 23 3899999999999999999999 5899999997664322 1000 0
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-----cccC--Ch---hh
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFID--TA---HN 294 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-----fFlD--ta---~n 294 (394)
....+.|...|+..++. .+++||+|+-- +|-| +. .-
T Consensus 94 -------------------------------~~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~ 139 (482)
T KOG2352|consen 94 -------------------------------ERPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAH 139 (482)
T ss_pred -------------------------------CCcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHH
Confidence 01237888889888764 57999999832 2322 11 13
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q 016155 295 IVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 295 i~~yl~~I~~~LKpGG~wIN~ 315 (394)
+..++..|+++|+|||++|++
T Consensus 140 v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 140 VSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred hhHHHhhHHHHhccCCEEEEE
Confidence 557899999999999999973
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.41 E-value=0.00064 Score=62.08 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=57.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||+|-.+..+|++ +-.|+..|... -+-..+..+.. +.. .
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------~------------ 94 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------L------------ 94 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc-------------c------------
Confidence 6789999999999999999999 67899999998 44322211110 000 0
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~e-ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...++++...|..+ +.......+.||+|+.+=.+=..+.....+++|.++|+|+|.++
T Consensus 95 -------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 95 -------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred -------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 00112223322211 10000124689999976222123456788999999999988855
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.35 E-value=0.00094 Score=68.68 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+|||++||+|-++..+|.. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998765532211 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+..+..+|+.++.. . .+.||+|+. |..-....+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 114577888766532 1 357998865 332224578888778899999886
No 200
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.25 E-value=0.00086 Score=60.83 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 204 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ 204 (394)
+..+|||+||+.|..+..+..++ ..|.|+|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999999 78999999873
No 201
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.25 E-value=0.0037 Score=63.31 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=91.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
...+|.|.|+||++..|...--+|.|++|...-++.+. .++ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 46789999999999999995556999999987765322 000 0 1
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 328 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD--ta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~-- 328 (394)
++..+.|||+.- - | +=|+|+..+.|. |-++..++|+++++.|+|||..|-...++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~-~-P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD-T-P----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc-C-C----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 245688998764 2 2 225999998775 4567999999999999999999954443322 111110
Q ss_pred -------------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 -------------EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 -------------~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
......+.+..|...++.+.||....-.
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEE
Confidence 0012456688888888888888766533
No 202
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.25 E-value=0.0018 Score=65.63 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
++.-|||+|||.|-|++.-|+.|. .|.++|-|. |..-|+.+... |
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~-----------------N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS-----------------N---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc-----------------C----------------
Confidence 677899999999999999999996 699999986 65555544321 1
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~---fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
...+++..+-|-..++.. .++.|++++- +.|-...=+..|+..= +.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 112347777788877754 3789999975 3343433355566544 9999999875
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.21 E-value=0.0037 Score=61.36 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~ 215 (394)
.++.+|....|+. .+.+|||.|||.|.-++.+... -..++++|-|..|+..++.++..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4888898888764 5679999999999877666543 35789999999999999988753
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.16 E-value=0.00062 Score=62.34 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 253 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~ 253 (394)
.|||+.||.|..+..||+.+-.|.|+|++...+..++.- ..+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hN---------a~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHN---------AEVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHH---------HHHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHH---------HHHc----------------------------
Confidence 699999999999999999999999999999999776622 1222
Q ss_pred CCCCCceeEEecccccccCCCCCCCC-ccEEE
Q 016155 254 AGITEGFSMCGGDFVEVYSDPSQVGA-WDAVV 284 (394)
Q Consensus 254 ~~~~~~ls~~~GDf~ely~~~~~~~~-fD~Vv 284 (394)
...+++.++.|||.++... ..... ||+|+
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~vF 74 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKR-LKSNKIFDVVF 74 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGG-B------SEEE
T ss_pred -CCCCcEEEEeCCHHHHHhh-ccccccccEEE
Confidence 1124589999999987531 11122 79986
No 205
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.16 E-value=0.0017 Score=61.46 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~-v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+....+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++...+. ...+ ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5668999999999998877644 776 999999998776666444321110 0000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
...+.+..|||++.-.....-..-|+|+.+-++= .+.+...|..+..-||||-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1237788999986321000002347877553321 223667788899999999999975444
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.03 E-value=0.0025 Score=67.84 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+..+|++|||.|....++|.+- ..+.|+|.+..-+..+ ++.+.+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~---~~~~~~~~---------------------------- 395 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANV---LKLAGEQN---------------------------- 395 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHH---HHHHHHcC----------------------------
Confidence 57899999999999999999995 6789999998755322 22111100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt------a~n-i--~~yl~~I~~~LKpGG~wI 313 (394)
-.|+.++.+|+..+.. -..++++|.|.-+| =|. .+. + .++++.++++|||||.+-
T Consensus 396 --------l~N~~~~~~~~~~~~~-~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 396 --------ITNFLLFPNNLDLILN-DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred --------CCeEEEEcCCHHHHHH-hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1235566667643321 12357788886665 221 111 1 268999999999999875
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.02 E-value=0.002 Score=59.71 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+|||+=||+|.++.|...+|. .|+.+|.+...+...+.-++...
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-------------------------------- 89 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-------------------------------- 89 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------
Confidence 467999999999999999999996 79999999987754432222110
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCChhh----HHHHHHHHH--HhccCCcEEE
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTAHN----IVEYIEIIS--RILKDGGVWI 313 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~-~~~~~~fD~VvT~fFlDta~n----i~~yl~~I~--~~LKpGG~wI 313 (394)
..+....+.+|+...... ......||+| |+|.+-. +.+.++.+. .+|+++|++|
T Consensus 90 ------~~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 90 ------LEDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred ------CCcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEE
Confidence 011256677786554311 0125789998 5565411 355677776 7899999988
No 208
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.90 E-value=0.011 Score=52.02 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~------~Gf~v~G~D~S~~ML~~s~f 211 (394)
+...|+|+|||.|.|++.||. .+..|.|+|.+..++..++.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 677999999999999999999 58899999999998865553
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.81 E-value=0.004 Score=63.98 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
+.+|||+-||+|-++.+++.+ | -.|++||++...+...+.-++. + .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~----- 93 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------S----- 93 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------C-----
Confidence 468999999999999999998 5 4799999999988544321110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..++.+..+|+..+... ..+.||+|. ||.-.....|++.+.+.+++||++.
T Consensus 94 --------~~~~~v~~~Da~~~l~~--~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 94 --------VENIEVPNEDAANVLRY--RNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred --------CCcEEEEchhHHHHHHH--hCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 01256777887765431 135799884 4553334589999999999999887
No 210
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.81 E-value=0.0054 Score=63.44 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhh--hhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+||++=|=||..+...|..|. .||++|.|-..|-.|+.- ||.. .
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~----------------------------~-- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGL----------------------------D-- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCC----------------------------C--
Confidence 478999999999999999999999 999999999998655421 2210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-CCCCCccEEEEe--cccC-------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFID-------TAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~-~~~~~fD~VvT~--fFlD-------ta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
.....++.+|..++.... ....+||+|+.= -|.- -..+..+.+....++|+|||+++-..-
T Consensus 267 ---------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 267 ---------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ---------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 123678999988864311 123589999842 1221 123344556667789999999984210
Q ss_pred cchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 318 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 318 Llyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
..+ .+.++-.+.|.+.+...|.....
T Consensus 338 -~~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 338 -SRH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred -CCc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 000 12234455566666666665544
No 211
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.78 E-value=0.0033 Score=62.43 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhh--hhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSF--ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~f--iln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++.+||++=|=||.++...|..|. .|+++|.|..+|..++- .+|.. .
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~----------------------------~-- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGL----------------------------D-- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-----------------------------C--
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------C--
Confidence 466999999999999999898896 69999999999965542 22210 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC----hhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----AHNIVEYIEIISRILKDGGVWINLGPLLYH 321 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt----a~ni~~yl~~I~~~LKpGG~wIN~GPLlyh 321 (394)
.....++.+|..+....-...++||+||.= -|.-. ..+..+.+....++|+|||+++-.
T Consensus 173 ---------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~------ 237 (286)
T PF10672_consen 173 ---------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC------ 237 (286)
T ss_dssp ---------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE------
T ss_pred ---------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE------
Confidence 123788899987743210124689999832 12221 234455678888999999998731
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCC--CEEEEEeeccccC
Q 016155 322 FADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKEKTIETTY 362 (394)
Q Consensus 322 ~~~~~g~~~~~~ieLS~eEl~~ll~~~G--F~ii~e~~i~~~Y 362 (394)
.. +-.++.+++.+++...+ +++++.-..+..|
T Consensus 238 -sc--------s~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df 271 (286)
T PF10672_consen 238 -SC--------SHHISPDFLLEAVAEAAREVEFIERLGQPPDF 271 (286)
T ss_dssp -E----------TTS-HHHHHHHHHHHHHHCEEEEEEE-----
T ss_pred -cC--------CcccCHHHHHHHHHHhCccceEeeeecccccc
Confidence 11 23456666666555433 4555433334444
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.72 E-value=0.014 Score=59.50 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+||++|..++.|+++|..|+|+|.+. |- ..+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999554 31 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 309 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpG 309 (394)
...++....+|-..... ..+.+|.||+ |......+..+-|.++|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p---~~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP---PRKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC---CCCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01235556666555322 1467899876 66666777888888888776
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.54 E-value=0.012 Score=58.28 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+++.|-+.-+ .++...||++|-|||.|+..|-.+|-.|.|+|+...|+.
T Consensus 46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmva 94 (315)
T KOG0820|consen 46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVA 94 (315)
T ss_pred HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHH
Confidence 5555544332 347789999999999999999999999999999999984
No 214
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0086 Score=62.67 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
++.+|||+=||.|.++..||++...|.|+|++..++.+|.+.... +
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----N------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----c------------------------------
Confidence 567899999999999999999999999999999999988854321 1
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh-hHH-HHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NIV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~-ni~-~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
..+|+.|..||..++.........+|+|+ +|.+. -+. +.++.|.+.-.+.=+.|...|...
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 01247889999887653211234678884 57542 233 677777775444433343333211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
..|+. ++...|+++.+..
T Consensus 402 ---------aRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHH-HHHhCCeEEEEEE
Confidence 23444 4557788887755
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.47 E-value=0.0069 Score=61.54 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=34.9
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999997766
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.46 E-value=0.019 Score=60.67 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=33.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~ 210 (394)
++.+|||.+||-|.=+..||.+- -.+++||+|...+...+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~ 155 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH 155 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 67899999999999999998861 27999999999885444
No 217
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.43 E-value=0.018 Score=55.45 Aligned_cols=123 Identities=24% Similarity=0.196 Sum_probs=68.4
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~fil 213 (394)
-+|-|... |. .+-..|..-+.+..-.++.+||-+|+.+|..+-.++.- .=.|.|+|||.-+. +-++
T Consensus 47 eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~---rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM---RDLL 115 (229)
T ss_dssp EEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH---HHHH
T ss_pred ceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH---HHHH
Confidence 47888864 22 35555554443333346789999999999998777665 33799999999664 2333
Q ss_pred hccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCC
Q 016155 214 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 214 n~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~el--y~~~~~~~~fD~VvT~fFlDt 291 (394)
+-+++. -.|.| +.+|.+.- |. .--+..|+| |.|.
T Consensus 116 ~la~~R--~NIiP------------------------------------Il~DAr~P~~Y~--~lv~~VDvI----~~DV 151 (229)
T PF01269_consen 116 NLAKKR--PNIIP------------------------------------ILEDARHPEKYR--MLVEMVDVI----FQDV 151 (229)
T ss_dssp HHHHHS--TTEEE------------------------------------EES-TTSGGGGT--TTS--EEEE----EEE-
T ss_pred HHhccC--Cceee------------------------------------eeccCCChHHhh--cccccccEE----EecC
Confidence 433322 12223 33454421 21 112356666 4465
Q ss_pred h--hhHHHHHHHHHHhccCCcEEEE
Q 016155 292 A--HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 292 a--~ni~~yl~~I~~~LKpGG~wIN 314 (394)
+ ....-.+......||+||.++-
T Consensus 152 aQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 152 AQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CChHHHHHHHHHHHhhccCCcEEEE
Confidence 4 2244467777789999999984
No 218
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.43 E-value=0.001 Score=63.36 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=88.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+.++||+|+|-|-.+..++-.--+|.+.|+|..|.. +-+++ .+ .+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~-------rL~kk-~y----------------------nV--- 157 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRD-------RLKKK-NY----------------------NV--- 157 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHH-------HHhhc-CC----------------------ce---
Confidence 35689999999999999888877668999999999963 11111 00 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC-CcEEEE--ecCcchhhhh-c
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWIN--LGPLLYHFAD-L 325 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKp-GG~wIN--~GPLlyh~~~-~ 325 (394)
+ . ..|... .+=+||+|.+.-.||..-+....++.|+.+|.| .|..|- +=|. -||-. .
T Consensus 158 ----------l--~---~~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~-~hYVE~N 218 (288)
T KOG3987|consen 158 ----------L--T---EIEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHYVETN 218 (288)
T ss_pred ----------e--e---ehhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc-cceeecC
Confidence 0 0 112211 134689886667899998999999999999999 888874 2232 23322 1
Q ss_pred cCCCCCcc---c---cCCHHH----HHHHHHhCCCEEEEEeeccccCCC
Q 016155 326 YGQEDEMS---I---ELSLED----VKRVALHYGFEFEKEKTIETTYTT 364 (394)
Q Consensus 326 ~g~~~~~~---i---eLS~eE----l~~ll~~~GF~ii~e~~i~~~Y~~ 364 (394)
.++.+... + .-++|| +.+++++.||.++. +...+|+-
T Consensus 219 ~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~vea--wTrlPYLC 265 (288)
T KOG3987|consen 219 TSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEA--WTRLPYLC 265 (288)
T ss_pred CCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhh--hhcCCeec
Confidence 12211111 0 114443 45778899998765 22345643
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.049 Score=52.60 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred hhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhh
Q 016155 138 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 138 ~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn 214 (394)
..-|--.+..|.-+ +++-|-+.+ +..++|++|-=||.=+..+|.. +-.|+++|+...-.....-+..
T Consensus 50 ~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k 119 (237)
T KOG1663|consen 50 QPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK 119 (237)
T ss_pred CcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH
Confidence 35576676666654 566665554 5679999997777665555554 6789999998877654432221
Q ss_pred ccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---CCCCCCCccEEEEecccCC
Q 016155 215 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWDAVVTCFFIDT 291 (394)
Q Consensus 215 ~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~---~~~~~~~fD~VvT~fFlDt 291 (394)
.+ .....+++++|+..+.-. ..-+.++||.| |+|.
T Consensus 120 ~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa----FvDa 157 (237)
T KOG1663|consen 120 LA--------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA----FVDA 157 (237)
T ss_pred hc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE----EEcc
Confidence 11 112236777777765321 01246889988 6775
Q ss_pred h-hhHHHHHHHHHHhccCCcEEE
Q 016155 292 A-HNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 292 a-~ni~~yl~~I~~~LKpGG~wI 313 (394)
- .|=..|++..-++||+||+++
T Consensus 158 dK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 158 DKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred chHHHHHHHHHHHhhcccccEEE
Confidence 4 344489999999999999998
No 220
>PRK10742 putative methyltransferase; Provisional
Probab=96.32 E-value=0.01 Score=57.83 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
.+|||.=+|+|+.++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998875444333
No 221
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.29 E-value=0.01 Score=60.51 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=34.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
.+|||++||+|.++..||+....|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 46999999999999999998888999999999997666
No 222
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.0075 Score=54.75 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~ 210 (394)
.+..+.+-+.+. .+.+++|+|||+|-|....+..+-. |.|+|+....|...+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 444455545433 6789999999999999888887764 789999999997655
No 223
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.26 E-value=0.067 Score=54.48 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=97.2
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHh--hhhhccc
Q 016155 141 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS--FILNHTE 217 (394)
Q Consensus 141 WS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~-v~G~D~S~~ML~~s~--filn~~~ 217 (394)
||.--..||.. +.+... .+..|||+=||.|.++..+|+.|-. |.++|+.+..+.... .-||+.
T Consensus 171 Fsprl~~ER~R----va~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v- 236 (341)
T COG2520 171 FSPRLSTERAR----VAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV- 236 (341)
T ss_pred ECCCchHHHHH----HHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-
Confidence 77766677763 333322 4779999999999999999999987 999999987763211 112211
Q ss_pred cccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH
Q 016155 218 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE 297 (394)
Q Consensus 218 ~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~ 297 (394)
.+.+..+.||..++-. .-+.+|-|+-..+-++. +
T Consensus 237 ---------------------------------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a~----~ 270 (341)
T COG2520 237 ---------------------------------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSAH----E 270 (341)
T ss_pred ---------------------------------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcch----h
Confidence 1126778999988753 22789988766654433 6
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 298 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 298 yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
|+...-.+||+||+.- .|.+..+ ....+....+++.+..+.|++....
T Consensus 271 fl~~A~~~~k~~g~iH-----yy~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 271 FLPLALELLKDGGIIH-----YYEFVPE-----DDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred hHHHHHHHhhcCcEEE-----EEeccch-----hhcccchHHHHHHHHhhccCcceEE
Confidence 8888889999977653 1222211 0112347788999999988766553
No 224
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.21 E-value=0.014 Score=59.22 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~s~ 210 (394)
++.+|++.|+| +|.+|..+|+ +|.+|+++|.|..=+..++
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 67899999775 8899999999 8999999999998776555
No 225
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.16 E-value=0.039 Score=54.77 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHh
Q 016155 146 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 210 (394)
Q Consensus 146 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~ 210 (394)
+.|-+..-..+++.+.+. ..-++..|||+|||+|-++.-|+.. + ..|+|+|.|...+..+.
T Consensus 127 RpETEE~V~~Vid~~~~~----~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNS----EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhhh----hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 456665444455555432 1124568999999999998887543 4 46899999999986554
No 226
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.07 E-value=0.04 Score=51.28 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=80.3
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|||+|+|-|-.+.-||-. ...++-+|-...-..+-+.+... +.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~----------------------------L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE----------------------------LGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH----------------------------HT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH----------------------------hCC-----
Confidence 8999999999998888766 46899999998877544433211 010
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccCCCC
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYGQED 330 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~-GPLlyh~~~~~g~~~ 330 (394)
.|+..+.+...+ . ...+.||+|++--+-. +..+++-+..+||+||++|-+ ||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~~----l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVAP----LDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSSS----HHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhcC----HHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 246778877766 1 2358999998876643 457788888999999999852 331
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEE
Q 016155 331 EMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 331 ~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
.+=..++.+..++..|.+....
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEeee
Confidence 1112455566677777777663
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.03 E-value=0.071 Score=52.83 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 171 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+.+|+-+||| +---+..||++ |..|.++|.+...+..|+.+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34599999999 66668888865 4678999999999988876654100
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD-ta~ni~~yl~~I~~~LKpGG~wI 313 (394)
..+.+|.|..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||..++
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 113458999999887642 236899998665543 56667789999999999999888
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.79 E-value=0.041 Score=53.38 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
++..||++|.|+|.++.+|++.|-.|+++|.+..++-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998763
No 229
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.78 E-value=0.32 Score=47.67 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.1
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHh
Q 016155 174 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~ 210 (394)
+||++-||.|.+..-|.+.|+++ .++|++...+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 69999999999999999999985 68999998875433
No 230
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.77 E-value=0.12 Score=50.05 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 174 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
+|+++=||.|.+..-|.+.||++ .++|++.....+.+ .|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~--~N~~------------------------------------ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK--ANFP------------------------------------ 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH--HHHT------------------------------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh--hccc------------------------------------
Confidence 78999999999999999999975 59999998765433 2221
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEec----c--------cCChhh-HHHHHHHHHHhccCCcEEE-EecCc
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----F--------IDTAHN-IVEYIEIISRILKDGGVWI-NLGPL 318 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f----F--------lDta~n-i~~yl~~I~~~LKpGG~wI-N~GPL 318 (394)
....+|..++....... ..|+++..+ | ++...+ +...+-.+.+.+||.-.++ |+-.|
T Consensus 44 --------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l 114 (335)
T PF00145_consen 44 --------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGL 114 (335)
T ss_dssp --------EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGG
T ss_pred --------ccccccccccccccccc-cceEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEeccccee
Confidence 12334444432100001 366666443 1 222333 5444444445678966666 54333
Q ss_pred chhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 016155 319 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 386 (394)
Q Consensus 319 lyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~~~ 386 (394)
+-.-. .-..+.+.+.|+++|+.+...-.-...|+..... ...|+|+.|+..
T Consensus 115 ~~~~~-----------~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R------~R~fivg~r~~~ 165 (335)
T PF00145_consen 115 LSSKN-----------GEVFKEILEELEELGYNVQWRVLNAADYGVPQNR------ERVFIVGIRKDL 165 (335)
T ss_dssp GTGGG-----------HHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-------EEEEEEEEEGGG
T ss_pred ecccc-----------ccccccccccccccceeehhccccHhhCCCCCce------eeEEEEEECCCC
Confidence 32100 1246888999999999887555445667654433 678889988743
No 231
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.76 E-value=0.01 Score=57.37 Aligned_cols=80 Identities=26% Similarity=0.276 Sum_probs=48.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 173 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
.+|||.=+|+|+-|+-||..|..|+|+|-|+.+...-..-|+++...... +.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------------------~~---------- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------------------LA---------- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------------------HH----------
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------------------HH----------
Confidence 58999999999999999999999999999998875544444433211000 00
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEE
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 284 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~Vv 284 (394)
....+|+++.+|..++.. ...++||+|.
T Consensus 129 --~~~~ri~l~~~d~~~~L~--~~~~s~DVVY 156 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLR--QPDNSFDVVY 156 (234)
T ss_dssp --HHHHHEEEEES-CCCHCC--CHSS--SEEE
T ss_pred --HHHhCCEEEcCCHHHHHh--hcCCCCCEEE
Confidence 012358999999988643 3468999995
No 232
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.067 Score=50.14 Aligned_cols=38 Identities=24% Similarity=-0.013 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~ 208 (394)
.+.++||+=+|+|-|+.|-+.||. .|+.+|.+...+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 567999999999999999999995 69999999987743
No 233
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.70 E-value=0.043 Score=51.89 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=78.0
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 145 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 145 g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
+..||-+.|...++...+ ..+-|+|+|+|-|++--|..--+|.++|..+.-...+. .+
T Consensus 16 ~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------eN---- 73 (252)
T COG4076 16 RDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------EN---- 73 (252)
T ss_pred hhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------hc----
Confidence 456787777766666543 46899999999999999999889999999996643222 10
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---HHHHHHH
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---IVEYIEI 301 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~n---i~~yl~~ 301 (394)
+++| .-.+++.+.||.++. . + +.-|+| .|-.|||+-= -...+..
T Consensus 74 -------------------~~v~--------g~~n~evv~gDA~~y-~--f--e~ADvv-icEmlDTaLi~E~qVpV~n~ 120 (252)
T COG4076 74 -------------------LHVP--------GDVNWEVVVGDARDY-D--F--ENADVV-ICEMLDTALIEEKQVPVINA 120 (252)
T ss_pred -------------------CCCC--------CCcceEEEecccccc-c--c--ccccee-HHHHhhHHhhcccccHHHHH
Confidence 1122 123589999998874 2 1 345665 5677888732 2235666
Q ss_pred HHHhccCCcEEE
Q 016155 302 ISRILKDGGVWI 313 (394)
Q Consensus 302 I~~~LKpGG~wI 313 (394)
+-..||..|..|
T Consensus 121 vleFLr~d~tii 132 (252)
T COG4076 121 VLEFLRYDPTII 132 (252)
T ss_pred HHHHhhcCCccc
Confidence 666778888887
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.68 E-value=0.42 Score=45.78 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..+++|+|+|.|-.+.-||-. .-.|+-+|-...=..+-+.+.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~----------------------------eL~---- 115 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK----------------------------ELG---- 115 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH----------------------------HhC----
Confidence 579999999999998887733 4558888876544432222111 001
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 328 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~-fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~ 328 (394)
-+|+.++.+-..++-. ... ||+|++--|- ++...++-...+||+||.++. |.+...
T Consensus 116 -------L~nv~i~~~RaE~~~~----~~~~~D~vtsRAva----~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 116 -------LENVEIVHGRAEEFGQ----EKKQYDVVTSRAVA----SLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred -------CCCeEEehhhHhhccc----ccccCcEEEeehcc----chHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 1246777777666432 223 9999775542 355677788899999999874 332211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCc
Q 016155 329 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNP 366 (394)
Q Consensus 329 ~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~ 366 (394)
.=-..|.+..+...||.+++......++...+
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~ 204 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDGE 204 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCCc
Confidence 11345667778889999998775555554433
No 235
>PRK13699 putative methylase; Provisional
Probab=95.39 E-value=0.12 Score=49.56 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=51.3
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 016155 261 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 325 (394)
Q Consensus 261 s~~~GDf~ely~~~~~~~~fD~VvT~--fFlDt----a---------~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~ 325 (394)
.+..||.+++.. ...++++|+|+|- |++.. . +-+.+++++++|+|||||.++.+... .
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~----~-- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW----N-- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc----c--
Confidence 567889888632 1246899999987 55420 0 11346789999999999999863211 0
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 326 YGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 326 ~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
....+..++++.||.+..
T Consensus 76 -----------~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEee
Confidence 123456678899999765
No 236
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.19 Score=47.30 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~~ML~~s~ 210 (394)
...-+|++|||.|-..-.|++. | --..+.|++...+.+..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl 85 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL 85 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH
Confidence 3557999999999999888876 3 34569999999886543
No 237
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.22 E-value=0.061 Score=46.33 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=43.8
Q ss_pred HHHhhcCcccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 016155 135 RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFS 202 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S 202 (394)
+.++..|.+.-.++.- .|. -|..+|..+..... .++...-.|+|||.|=|++-|.+.||.=.|+|.=
T Consensus 20 ~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 20 RWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 4667789764444432 111 13344444332211 1256789999999999999999999999999953
No 238
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.17 Score=50.23 Aligned_cols=133 Identities=22% Similarity=0.217 Sum_probs=84.0
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhhhcc
Q 016155 140 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 216 (394)
Q Consensus 140 DWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~filn~~ 216 (394)
+|.-.=..--+..|.|=++.|..++.- +++..||+-|.|.|.++..||+.= =++...||-..-. ...+.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~e-- 148 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKALE-- 148 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHHH--
Confidence 355433333466787777777777643 378899999999999999999872 3577788844221 11111
Q ss_pred ccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH
Q 016155 217 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 296 (394)
Q Consensus 217 ~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~ 296 (394)
+|. .- ..++++.+..-|....-. ......+|+| |||-. +.-
T Consensus 149 ----eFr-------------------~h----------gi~~~vt~~hrDVc~~GF-~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 149 ----EFR-------------------EH----------GIGDNVTVTHRDVCGSGF-LIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ----HHH-------------------Hh----------CCCcceEEEEeecccCCc-cccccccceE----EEcCC-Chh
Confidence 111 10 123346666666543211 1224667777 77854 466
Q ss_pred HHHHHHHHhccCCc-EEEEecCcc
Q 016155 297 EYIEIISRILKDGG-VWINLGPLL 319 (394)
Q Consensus 297 ~yl~~I~~~LKpGG-~wIN~GPLl 319 (394)
+.+.-.+++||.+| ++.+|.|..
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHHH
Confidence 88999999999866 888998853
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.74 E-value=0.072 Score=54.17 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhh
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 211 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~f 211 (394)
.+++.+.+.++.. +.+|||+=||+|.++..||+.+-.|+|+|.+..|+..|+.
T Consensus 184 ~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 184 KLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp HHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH
Confidence 3555555555532 2389999999999999999999999999999999987763
No 240
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.69 E-value=0.013 Score=50.41 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=42.2
Q ss_pred CccEEEEec-----ccCCh-hhHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCccccCCHHHHHHHHH
Q 016155 279 AWDAVVTCF-----FIDTA-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 346 (394)
Q Consensus 279 ~fD~VvT~f-----FlDta-~ni~~yl~~I~~~LKpGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~eEl~~ll~ 346 (394)
+||+|++.- .|.-. +.+..+|+.|+.+|+|||++| +-|--|. |....... .-..++|..++...+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478886542 23332 348899999999999999999 4454443 21110000 01257788888999887
Q ss_pred h--CCCEEEEEe
Q 016155 347 H--YGFEFEKEK 356 (394)
Q Consensus 347 ~--~GF~ii~e~ 356 (394)
. .||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
No 241
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.62 E-value=0.77 Score=43.48 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=76.8
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCC
Q 016155 175 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 252 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~ 252 (394)
|.|+||-=|.|+..|+++|. .|.++|++..-|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 67999999999999999998 6899999999987666433211
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 016155 253 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 332 (394)
Q Consensus 253 ~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~ 332 (394)
...+.+....||=++... ..+..|+||-+=. -..-+.+.|+.....++..-.||- -|
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lIL-qP--------------- 101 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLIL-QP--------------- 101 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EE---------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEEE-eC---------------
Confidence 112347788888655432 1233688775421 111244556666666665556662 22
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEee
Q 016155 333 SIELSLEDVKRVALHYGFEFEKEKT 357 (394)
Q Consensus 333 ~ieLS~eEl~~ll~~~GF~ii~e~~ 357 (394)
.-...+|++.|.+.||.++.|..
T Consensus 102 --~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 102 --NTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp --SS-HHHHHHHHHHTTEEEEEEEE
T ss_pred --CCChHHHHHHHHHCCCEEEEeEE
Confidence 12678999999999999999873
No 242
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.42 Score=48.77 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHh
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 210 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf----~v~G~D~S~~ML~~s~ 210 (394)
.++.+|||+.++-|.=+..||++.. .|+++|.|..=+-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4778999999999999888888865 4899999997764333
No 243
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.37 Score=49.80 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~-----------------------------------------v~G~D~S~~ML~~s~ 210 (394)
...++||=||.|.++.|.|.+|-+ ..|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 357999999999999999999842 569999999998776
Q ss_pred hhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---
Q 016155 211 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--- 287 (394)
Q Consensus 211 filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--- 287 (394)
- | +.. +...+.+.|.++|+..+.. +. +.+|+||++=
T Consensus 272 ~--N-A~~-----------------------------------AGv~d~I~f~~~d~~~l~~-~~--~~~gvvI~NPPYG 310 (381)
T COG0116 272 A--N-ARA-----------------------------------AGVGDLIEFKQADATDLKE-PL--EEYGVVISNPPYG 310 (381)
T ss_pred H--H-HHh-----------------------------------cCCCceEEEEEcchhhCCC-CC--CcCCEEEeCCCcc
Confidence 2 2 111 1223458999999998864 22 7899999982
Q ss_pred -ccCChhhHHHH----HHHHHHhccCCcEEEEe
Q 016155 288 -FIDTAHNIVEY----IEIISRILKDGGVWINL 315 (394)
Q Consensus 288 -FlDta~ni~~y----l~~I~~~LKpGG~wIN~ 315 (394)
=|.+...+... .+++.+.++--+.+|-.
T Consensus 311 eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 311 ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 25544434433 33444555555666643
No 244
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.20 E-value=0.41 Score=45.54 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
++..|+|+||--|.-+..++++.-. |.|+|+-+--. +
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------------------------------~- 84 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------------------------------I- 84 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------------------------------------C-
Confidence 6789999999999999999888543 89999875110 1
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecc--------cCChhh---HHHHHHHHHHhccCCcE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IVEYIEIISRILKDGGV 311 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~-----~~~~~~fD~VvT~fF--------lDta~n---i~~yl~~I~~~LKpGG~ 311 (394)
.++.+++|||++--.. .......|+|++=.. +|++.- ....++....+|+|||.
T Consensus 85 ----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 85 ----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred ----------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCe
Confidence 1267788888752110 012344699985332 233211 11245566689999999
Q ss_pred EEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 312 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 312 wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|+.- . |. | =..+++...+++ .|+.++..
T Consensus 155 fv~K---~--fq---g--------~~~~~~l~~~~~-~F~~v~~~ 182 (205)
T COG0293 155 FVAK---V--FQ---G--------EDFEDLLKALRR-LFRKVKIF 182 (205)
T ss_pred EEEE---E--Ee---C--------CCHHHHHHHHHH-hhceeEEe
Confidence 9961 1 11 1 135666677755 58888754
No 245
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.12 E-value=0.11 Score=45.58 Aligned_cols=74 Identities=30% Similarity=0.349 Sum_probs=49.3
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccc
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE 335 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ie 335 (394)
+.+..||+.+... .-...||+|+-==|- ...|. .++|+.|+++++|||++.. |.
T Consensus 33 L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys-------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS-------------- 90 (124)
T ss_dssp EEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S---------------
T ss_pred EEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee--------------
Confidence 7899999987543 123678877422111 12333 4799999999999999984 21
Q ss_pred CCHHHHHHHHHhCCCEEEEEe
Q 016155 336 LSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 336 LS~eEl~~ll~~~GF~ii~e~ 356 (394)
+..-+++.|.++||++.+..
T Consensus 91 -~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE
T ss_pred -chHHHHHHHHHcCCEEEEcC
Confidence 23458899999999998765
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.01 E-value=0.33 Score=46.41 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=45.2
Q ss_pred HhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHhhhhh
Q 016155 137 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 137 ~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~-G-f~v~G~D~S~~ML~~s~filn 214 (394)
-+|.|-+. |.. +-..+..-+.+..-+++.+||=+|+-+|..+-.++.- | =.+.|+|||+.|. +-+|+
T Consensus 50 eYR~Wnp~----RSK----LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RSK----LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hhH----HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 332 3333333222222347889999999999987777655 3 2589999999886 33455
Q ss_pred ccc
Q 016155 215 HTE 217 (394)
Q Consensus 215 ~~~ 217 (394)
-+.
T Consensus 119 ~a~ 121 (231)
T COG1889 119 VAE 121 (231)
T ss_pred HHH
Confidence 444
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.96 E-value=0.093 Score=45.18 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.4
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHh
Q 016155 174 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~ 210 (394)
.|||+|||.|.++..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 3899999999999999999875 999999999985444
No 248
>PRK11524 putative methyltransferase; Provisional
Probab=93.90 E-value=0.44 Score=46.81 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.6
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~--fFlDta--------------~ni~~yl~~I~~~LKpGG~wIN 314 (394)
-.++.||.+++.. ...+++||+|+|- |++... .-+.++++.++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4678899988532 1236899999994 765210 1134688999999999999974
No 249
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.79 E-value=0.35 Score=51.81 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=65.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|||. |..+...|+. |..|.+.|.+..-+..++-+ .+. ...+-+ ..++....
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA~---~v~i~~---------~e~~~~~~----- 224 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GAE---FLELDF---------EEEGGSGD----- 224 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCe---EEEecc---------cccccccc-----
Confidence 688999999996 5556555554 99999999999887655431 110 000000 00000000
Q ss_pred CCCCCCCCCCceeEEecccc----cccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 016155 249 IHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~----ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
.+ ..-.-.++. +.+. ..-+.+|+|+++--+...+...-..++..+.+||||+.+.+|
T Consensus 225 ------gy---a~~~s~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 ------GY---AKVMSEEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ------ch---hhhcchhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 000001111 1111 012468999999887764444344589999999999999764
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.92 Score=44.21 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=88.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|+|+|..+--|. +-|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH--------------------
Confidence 35555554 3321 2678999999999999999999996 6999999985541 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhhHHHHHHHHHHhccCCcEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGGVW 312 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~-fFlDta~ni~~yl~~I~~~LKpGG~w 312 (394)
+.+ .|- +.|-.-+++.+... .-.+..|++++- -||- +...|..+..+|+|||-.
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 22222333332211 111345666543 3554 456789999999999999
Q ss_pred EE-ecCcchhhhhccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 313 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 313 IN-~GPLlyh~~~~~g~----~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
|- +=|.+-.-.+..+. .+........+++...++..||.+....
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 86 44542211111110 1111234577889999999999988743
No 251
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=0.2 Score=53.66 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHhhhhhcccccccccccccc
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 228 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eL------A~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi 228 (394)
.|+..|..+.|+........|+++|+|.|=|+... ..+-.++.++|-.+-.+..-. |. +..
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~--n~~-------- 417 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NR--NFE-------- 417 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hh--chh--------
Confidence 48888999988765434567779999999986543 223345567776654442211 10 000
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHh
Q 016155 229 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 305 (394)
Q Consensus 229 ~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~ 305 (394)
.-.+.+.++-+||+++-. | .++-|++|+-. |=|..-. .+.|.-+.+.
T Consensus 418 --------------------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNELS-PECLDG~q~f 467 (649)
T KOG0822|consen 418 --------------------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNELS-PECLDGAQKF 467 (649)
T ss_pred --------------------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccCC-HHHHHHHHhh
Confidence 012347889999999853 2 47889998764 5444321 2889999999
Q ss_pred ccCCcEEE
Q 016155 306 LKDGGVWI 313 (394)
Q Consensus 306 LKpGG~wI 313 (394)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
No 252
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.44 E-value=0.07 Score=51.52 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
....|+|.-||-|.-+..+|..|-.|.++|+++.-+.+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 3457999999999999999999999999999998887766
No 253
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.13 E-value=0.12 Score=51.44 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccc
Q 016155 146 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 225 (394)
Q Consensus 146 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~ 225 (394)
..-|-...+...++|... | .+.-+||.|||-|.+..- .-.-.+.|.|++...+- .+.+
T Consensus 26 s~tr~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~-------~ak~------- 83 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLG-------GAKR------- 83 (293)
T ss_pred cccccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcC--CCcceeeecchhhhhcc-------cccc-------
Confidence 333444444555666553 2 356799999999987211 01224668888875542 1111
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHH
Q 016155 226 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEI 301 (394)
Q Consensus 226 Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~l-s~~~GDf~ely~~~~~~~~fD~VvT~fF---lDta~ni~~yl~~ 301 (394)
. +- .++.+|++.+. .....||.+++.-+ |-|..-....+++
T Consensus 84 ------------~--------------------~~~~~~~ad~l~~p---~~~~s~d~~lsiavihhlsT~~RR~~~l~e 128 (293)
T KOG1331|consen 84 ------------S--------------------GGDNVCRADALKLP---FREESFDAALSIAVIHHLSTRERRERALEE 128 (293)
T ss_pred ------------C--------------------CCceeehhhhhcCC---CCCCccccchhhhhhhhhhhHHHHHHHHHH
Confidence 0 11 35667887763 45789999887654 4455556688999
Q ss_pred HHHhccCCcEEE
Q 016155 302 ISRILKDGGVWI 313 (394)
Q Consensus 302 I~~~LKpGG~wI 313 (394)
..++|||||.-.
T Consensus 129 ~~r~lrpgg~~l 140 (293)
T KOG1331|consen 129 LLRVLRPGGNAL 140 (293)
T ss_pred HHHHhcCCCceE
Confidence 999999999843
No 254
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.07 E-value=0.45 Score=48.17 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=32.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.|||. |.++..+|++ |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 8898888776 76 5999999999875443
No 255
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.91 E-value=0.95 Score=43.85 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccC
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 233 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn 233 (394)
||...+.+.+. .++.+||.+|=|+|-.+-.+-.+- +.=+-+|.-..-+.- +....
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr---mr~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR---MRDWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH---HHhcc-----------------
Confidence 58877777654 278899999999999877775553 444555655554411 00000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 234 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 234 ~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
+ ....|+-.+.|-..++-.. -.++.||.|.---|-..-+++.++.+.+.++|||+|+|=
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0123455555555444321 235779999654455556788899999999999999996
Q ss_pred E
Q 016155 314 N 314 (394)
Q Consensus 314 N 314 (394)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 3
No 256
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=0.11 Score=47.47 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 211 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML~~s~f 211 (394)
++.+.+|+|+|-||++..-|+.| +..+|+|+.+-.+..|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 67899999999999999999999 889999999988776664
No 257
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.58 E-value=0.23 Score=47.24 Aligned_cols=77 Identities=22% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC--C-CccccCCHHHHHHHHHhCCCEEEE
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE--D-EMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~--~-~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
.++|.+++.-+|.+ .+..+....+++.|||||+++-. -|-.+ .|.. . ...-.++..-+++..+++||+++-
T Consensus 129 ~~~yhdmh~k~i~~-~~A~~vna~vf~~LKPGGv~~V~----dH~a~-pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 129 AQNYHDMHNKNIHP-ATAAKVNAAVFKALKPGGVYLVE----DHRAD-PGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred chhhhhhhccccCc-chHHHHHHHHHHhcCCCcEEEEE----ecccc-CCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 34555555545553 34568899999999999999842 23222 1111 1 112246888899999999999999
Q ss_pred Eeeccc
Q 016155 355 EKTIET 360 (394)
Q Consensus 355 e~~i~~ 360 (394)
|+.|..
T Consensus 203 eS~ila 208 (238)
T COG4798 203 ESEILA 208 (238)
T ss_pred eehhhc
Confidence 886543
No 258
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.26 E-value=1.7 Score=43.76 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
...+++++=||.|.+..-|...||++ .++|+....+.+.+ .|+. .
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~--~n~~----------~---------------------- 47 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK--ANFP----------H---------------------- 47 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH--HhCC----------C----------------------
Confidence 35689999999999988888999985 59999998875433 2211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Ee
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NL 315 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f-------------FlDta~ni~~yl~~I~~~LKpGG~wI-N~ 315 (394)
-.+..+|..++.........+|+|+.-+ +-|+-..+.-.+..+-..++|.-.++ |+
T Consensus 48 ----------~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV 117 (328)
T COG0270 48 ----------GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENV 117 (328)
T ss_pred ----------CceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecC
Confidence 0112233333221100001456665332 44554555555566667788833223 34
Q ss_pred cCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 016155 316 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 384 (394)
Q Consensus 316 GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~~i~~~Y~~d~~sm~~~~Y~~~f~va~K~ 384 (394)
.-|+.+ -.-.+++|++.|++.||.+...-.....|...... ..+|.|+.++
T Consensus 118 ~gl~~~------------~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~R------eRvfiig~~~ 168 (328)
T COG0270 118 KGLLSS------------KGQTFDEIKKELEELGYGVEFNILNAADYGVPQSR------ERVFIVGFRR 168 (328)
T ss_pred chHHhc------------CchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCc------cEEEEEEecC
Confidence 333332 12378999999999999843322223445543322 4566676443
No 259
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.05 E-value=2.4 Score=42.35 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=30.1
Q ss_pred EEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHh
Q 016155 175 CLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 210 (394)
Q Consensus 175 VLvpGCGlGRLa~eLA~~Gf~v~-G~D~S~~ML~~s~ 210 (394)
||++=||.|.+..-|.+.||++. ++|+......+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 58899999999999999999975 7999998775433
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.93 E-value=0.99 Score=46.76 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G-f-~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
...+||++|-|-|--++||-+-- + +++-+|+.+.|+..++... +..+ -|+-+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~--vlr~------------~N~~sf----------- 343 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHAT--VLRA------------LNQGSF----------- 343 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhh--Hhhh------------hccCCc-----------
Confidence 56799999999999999998874 4 6999999999998776221 0000 000000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh-hH-----HHHHHHHHHhccCCcEEEE
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NI-----VEYIEIISRILKDGGVWIN 314 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~-ni-----~~yl~~I~~~LKpGG~wIN 314 (394)
...+++.+..|...+-. ...+.||+|+--+ .|... .+ .++..-..+.|+++|++|-
T Consensus 344 -------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 -------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11247778888777643 2457899886433 33211 11 2466667788999999994
No 261
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.64 E-value=1.2 Score=46.64 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=28.0
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eL-A~~Gf~v~G~D~S~~ML~ 207 (394)
.+.+|++.|+|. |+.+..+ ...|..|..+|.+..-+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~ 239 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL 239 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH
Confidence 578999999996 6554444 445999999999876554
No 262
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.63 E-value=0.97 Score=44.15 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+.|||. |..+..+|+ +|+ .+.+.+.|..+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 567899988876 778877776 488 7999999887764
No 263
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.49 E-value=0.78 Score=44.37 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~ 208 (394)
.+.+||+.|+| +|.++.++|+ +|..|++.+-|..++..
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~ 204 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLEL 204 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 56789998877 5888888887 49999999999888643
No 264
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.09 E-value=0.91 Score=44.98 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s~ 210 (394)
++.+||+.||| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46789999876 56777777765 87 5889999987765443
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.79 E-value=0.15 Score=41.91 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=40.7
Q ss_pred EEecCCCChhHHHHHHc----C-CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 176 LVPGAGLGRLALEISHL----G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 176 LvpGCGlGRLa~eLA~~----G-f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
|++|+..|+-+..|++. + ..+.++|.-.. ....+.++ +..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~----------------------------~~~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEII----------------------------KKA------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhh----------------------------hhc------
Confidence 57898899987777653 2 36888888774 00000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhHHHHHHHHHHhccCCcEEE
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDt---a~ni~~yl~~I~~~LKpGG~wI 313 (394)
....++.++.|++.++... ...++||+| |||- .+.+...++.+...|+|||++|
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 1123589999999876421 112456655 6774 3667788999999999999987
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.22 E-value=4.9 Score=40.48 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~fil 213 (394)
+++++-+.+... ++..+||-=+|.|..+..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 445555544322 5668999999999999999876 257999999999997766443
No 267
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.15 E-value=1 Score=49.38 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=52.1
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 016155 259 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 331 (394)
Q Consensus 259 ~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlD---ta~ni----~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~ 331 (394)
.+.++.||+.+... .-...||+| |+| .+.|. .++|+.|++++||||+|+. |
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-----~----------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-----F----------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-----e-----------
Confidence 37789999987543 112446666 666 33443 4789999999999999984 2
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEE
Q 016155 332 MSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 332 ~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
-+..-+++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 15667889999999999874
No 268
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.14 E-value=1.3 Score=40.86 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| .|..+..+++ +|..|.+.+.+.....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 57799999998 4888777766 4899999999876653
No 269
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=89.30 E-value=0.77 Score=47.11 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 153 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 153 y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+.+=+.+|.....- .+++.-|+||=-|||.|.+--|.-|.-|.|-|+.+-|+-
T Consensus 192 mDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 192 MDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred cchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 34455555554332 237889999999999999999999999999999999973
No 270
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=89.04 E-value=4.1 Score=41.00 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHhhcCcccChhHH--hhchH---HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 016155 135 RNIVRDWAAEGKTER--DQCYK---PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 209 (394)
Q Consensus 135 ~q~~RDWS~eg~~ER--~~~y~---pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s 209 (394)
.|+-..|..+-.+|- +-+++ .|.+++++.+|+. .....-++.-.-|.|.+.-+|++.||+|.|.|++..|..+-
T Consensus 210 lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~-~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 210 LQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPEL-GLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEAR 288 (359)
T ss_pred HHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhh-cCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHH
Confidence 456667877544443 22332 3566677777754 23455677889999999999999999999999999998643
Q ss_pred h
Q 016155 210 S 210 (394)
Q Consensus 210 ~ 210 (394)
+
T Consensus 289 ~ 289 (359)
T KOG2872|consen 289 R 289 (359)
T ss_pred H
Confidence 3
No 271
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.80 E-value=0.89 Score=46.62 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
.+.+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45679999998 6677666544 599999999987543
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=88.38 E-value=1.5 Score=43.08 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 016155 125 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 202 (394)
Q Consensus 125 ~d~~kv~~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S 202 (394)
.|-..++..++++.+--. ...||-..+..+.+++....| ...+|||+|||+==|+..+... +..+.|.|++
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 444555555555544322 345676666666666655544 4679999999999999877666 5788899999
Q ss_pred HHHHHHHhhhhh
Q 016155 203 YYMMICSSFILN 214 (394)
Q Consensus 203 ~~ML~~s~filn 214 (394)
..|+.+-+-+++
T Consensus 139 ~~~ve~l~~~l~ 150 (251)
T PF07091_consen 139 SQLVEFLNAFLA 150 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999976554443
No 273
>PTZ00357 methyltransferase; Provisional
Probab=88.15 E-value=2.6 Score=47.03 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=58.9
Q ss_pred CeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 173 PACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 173 ~~VLvpGCGlGRLa~eLA~----~G--f~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
..|+|+|+|.|-|+-..-+ .| +.+.++|-....++ +++.+-.+...|+ + ..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-------- 758 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-------- 758 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc--------
Confidence 5789999999999654422 24 57889999843221 1111100111121 0 00
Q ss_pred CCCCCCCCCCCCceeEEecccccccCC--------CCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccC
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD 308 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~--------~~~~~~fD~VvT~f---FlDta~ni~~yl~~I~~~LKp 308 (394)
..-+..+.++..||+++-.. |...+++|+||+-. |=|..-. .+.|.-+.+.||+
T Consensus 759 -------~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELS-PECLDGaQrfLKd 823 (1072)
T PTZ00357 759 -------YTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELS-PECLEAFHAQLED 823 (1072)
T ss_pred -------ccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccCC-HHHHHHHHHhhhh
Confidence 01134478899999997431 11224799999864 5443211 2677777777776
No 274
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=87.76 E-value=2.2 Score=43.04 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCcccccc
Q 016155 170 ESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 246 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~Gf~---v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~i 246 (394)
.+..+|||+|-|-|....+.++. -. +.-+|+...-+..+..- +
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y---------------------------------~ 165 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQY---------------------------------L 165 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHH---------------------------------h
Confidence 36789999999999999999988 33 33445554333222211 1
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhh--HHHHHHHHHHhccCCcEEEEecCcch
Q 016155 247 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHN--IVEYIEIISRILKDGGVWINLGPLLY 320 (394)
Q Consensus 247 PDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~f--FlDta~n--i~~yl~~I~~~LKpGG~wIN~GPLly 320 (394)
|.+.-+ -.+.++.++-||=..++.. ...+.||+|+|-- -+-.|.+ ...|+..+.+.||+||+.+..|--+|
T Consensus 166 p~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 166 PTLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 111100 0123467788886665532 2368999998753 1223334 34689999999999999998765443
No 275
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.72 E-value=1.8 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+|.++|+|+ |.++..|++.|+.|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987653
No 276
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.62 E-value=1.5 Score=39.82 Aligned_cols=50 Identities=26% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 209 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s 209 (394)
+++.|-+.+.+ ++..||||=||.|..+..-.++|....|+|++......|
T Consensus 180 l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 180 LIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 45555555432 577999999999999999999999999999999887554
No 277
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=1.1 Score=41.56 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=47.6
Q ss_pred CCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 016155 277 VGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 277 ~~~fD~VvT~--fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
..+||+|++. .|+|-. -....++|..+|+|.|.-+-+.|- ..-|.+.....+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~--h~sLvdtIk~lL~p~g~Al~fsPR---------------Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEH--HESLVDTIKSLLRPSGRALLFSPR---------------RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHH--HHHHHHHHHHHhCcccceeEecCc---------------ccchHHHHHHHHHhceeEEEe
Confidence 4689999854 566654 347899999999999997655442 234788888889999999887
Q ss_pred Ee
Q 016155 355 EK 356 (394)
Q Consensus 355 e~ 356 (394)
++
T Consensus 164 ~e 165 (201)
T KOG3201|consen 164 EE 165 (201)
T ss_pred cc
Confidence 54
No 278
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=87.00 E-value=5.3 Score=39.60 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=76.0
Q ss_pred CeEEEecCCCC--hhHHHHHHc---CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 173 PACLVPGAGLG--RLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 173 ~~VLvpGCGlG--RLa~eLA~~---Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
...||+|||+= ..++|+|++ +..|.=+|....-+..++-+|....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------------------------ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------------------------ 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------------------------
Confidence 47999999975 357999877 6889999999988776666653211
Q ss_pred CCCCCCCCCCCceeEEeccccccc---CCCCCCCCcc-----EEE-E--ecccCChhhHHHHHHHHHHhccCCcEEEE--
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD-----AVV-T--CFFIDTAHNIVEYIEIISRILKDGGVWIN-- 314 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely---~~~~~~~~fD-----~Vv-T--~fFlDta~ni~~yl~~I~~~LKpGG~wIN-- 314 (394)
.....++.+|+++.- ..|...+-+| +|+ . ..|+....+....+.++...|.||.+++-
T Consensus 120 ---------~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 ---------RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp ---------TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred ---------CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 011567888887621 1111122333 233 2 24787777899999999999999999983
Q ss_pred ec----Ccc-----hhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 315 LG----PLL-----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 315 ~G----PLl-----yh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
+. |.. -.|.. ++.+ ...-|.+||.+++. ||++++.
T Consensus 191 ~t~d~~p~~~~~~~~~~~~--~~~~--~~~Rs~~ei~~~f~--g~elveP 234 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ--AGSP--GRPRSREEIAAFFD--GLELVEP 234 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH--CCS------B-HHHHHHCCT--TSEE-TT
T ss_pred cCCCCCHHHHHHHHHHHHc--CCCC--ceecCHHHHHHHcC--CCccCCC
Confidence 11 110 00111 1111 23459999999994 9999873
No 279
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.94 E-value=2.6 Score=41.23 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..||+. |+.|.++.-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56789998887 48888888777 999999988877653
No 280
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.86 E-value=2.8 Score=41.72 Aligned_cols=37 Identities=11% Similarity=-0.189 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~---Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|||. |.++..+|++ |..|+++|.+..-+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 577999999864 4556676663 467999998876554
No 281
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.84 E-value=3.8 Score=40.58 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=27.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|.++..+|+. |..|.+++.+..=+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 57899999965 56666777665 888999988876543
No 282
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.42 E-value=4 Score=39.57 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|+.+..+|+. |+.|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 89988888777 999999998888764
No 283
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.34 E-value=2.5 Score=41.25 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=27.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..+|+. |. .+.+++-+.....
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~ 206 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLD 206 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 56789998776 57777777776 75 7888887776654
No 284
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.85 E-value=4.5 Score=40.21 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~v~G~D~ 201 (394)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999874 7777777664 889999886
No 285
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.69 E-value=2.7 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 6789999997 599999988776 999999988876653
No 286
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.62 E-value=2.3 Score=42.35 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| .|.++..+|+. |.. |.+++.+..-+..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 67899999875 36667777765 885 99999888766443
No 287
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.57 E-value=2.7 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe
Q 016155 293 HNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 293 ~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..|..||+...++|.|||++|-+
T Consensus 202 k~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 202 KPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred chHHHHHHHHHHhccCCCeEEEE
Confidence 34778999999999999999965
No 288
>PLN02494 adenosylhomocysteinase
Probab=85.27 E-value=2.6 Score=44.90 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+|++.|+|. |+. +..+...|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 578999999983 333 22233358899999988743
No 289
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.23 E-value=57 Score=34.86 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHhhCCCCC---CCCCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHh
Q 016155 158 EELDALFPNRS---KESPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 210 (394)
Q Consensus 158 ~~L~~~~p~~~---~~~~~~VLvpGCGlGRLa~eLA~~Gf~v-~G~D~S~~ML~~s~ 210 (394)
..|.+++|... ...+.+++|+=||.|.+..-|-..|++| .++|+......+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 71 AHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred HHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 34555454321 2246799999999999999998899975 58999998765433
No 290
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.38 E-value=2.4 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~----Gf~v~G~D~S~~ML 206 (394)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+...-
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5789999976 5666666655 89999999988653
No 291
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.01 E-value=2.3 Score=41.06 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.| .|+|.++..+|+. |..|.+..-|..-.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~ 181 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV 181 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 678999998 4789999888775 88999888777554
No 292
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.59 E-value=3.6 Score=40.42 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 170 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 170 ~~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+++.+||+-|+ |.|.++..+|+. |..|.+..-+..-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~ 189 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV 189 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 36789999996 789998888875 99999888776554
No 293
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.51 E-value=4.1 Score=43.90 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCeEEEecCCCC-hhHHHHHH-cCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGLG-RLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGlG-RLa~eLA~-~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
++.+||++|+|.= ..+..+++ +|..|++.|.+..-+..++- +. ..+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-----a~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-----AEF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-----CeE---------------------Eecc-
Confidence 5689999999864 55555544 59999999999876544331 10 000 0110
Q ss_pred CCCCCCCCCCc-eeEEeccccc--ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEG-FSMCGGDFVE--VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~-ls~~~GDf~e--ly~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
..... ....+ -...-.+|.+ .+..+.+...+|+|+|+-.++..+...-..+++-+.+|||++.|++
T Consensus 215 ~~e~g-~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEG-GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccc-cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 00000 00000 0111123221 0000122356999999998887665444677888999999999964
No 294
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.43 E-value=5.7 Score=38.52 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..+|+. |+. |.+++-+.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56799998876 47777777665 777 888888877653
No 295
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.38 E-value=4.4 Score=40.94 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.5
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|+|. |+ +|..|+..|+.|.+.|.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 566899999987 43 5677778899999999875
No 296
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.01 E-value=3.7 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.049 Sum_probs=28.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| +|.++..+|+. |. .|.+++.+..-+..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~ 206 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVEL 206 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 57789998876 56677777666 88 48899988766543
No 297
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.98 E-value=4.5 Score=39.58 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML 206 (394)
++.+||+.||| .|.++..+|+. |.. |.++|.....+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 35679999875 57777777764 887 55677776554
No 298
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=82.95 E-value=5.9 Score=39.14 Aligned_cols=39 Identities=15% Similarity=-0.070 Sum_probs=33.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf---~v~G~D~S~~ML~~s 209 (394)
++.+|||..+|-|.=+..||.+-. .++++|++..-+..-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l 126 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRL 126 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHH
Confidence 567899999999999999988854 799999999887543
No 299
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=82.73 E-value=11 Score=36.82 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 689999997 457899999999999999887554
No 300
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.72 E-value=7.8 Score=36.54 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+|. |..+..+|+. |.. |.+++-+...+.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE 136 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence 678899998865 7777777765 888 999998877754
No 301
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.70 E-value=0.61 Score=42.98 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecC-cch---hhhhc--cCC-CC----CccccCCHHHH
Q 016155 275 SQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGP-LLY---HFADL--YGQ-ED----EMSIELSLEDV 341 (394)
Q Consensus 275 ~~~~~fD~VvT~fFlDt--a~ni~~yl~~I~~~LKpGG~wIN~GP-Lly---h~~~~--~g~-~~----~~~ieLS~eEl 341 (394)
+.+++.|+|.+-.++.. ...-..+++..++.|||||++-..-| +.| -|..+ -|+ .| ...+-.+.+++
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m 122 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMM 122 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHH
Confidence 45789999887766553 34466899999999999999965434 322 22211 121 11 11223366677
Q ss_pred HHHHHhCCCEEE
Q 016155 342 KRVALHYGFEFE 353 (394)
Q Consensus 342 ~~ll~~~GF~ii 353 (394)
..++..+||...
T Consensus 123 ~n~~m~~~~~~k 134 (185)
T COG4627 123 FNGFMDAGFVVK 134 (185)
T ss_pred HHHHHhhhheeh
Confidence 777777777653
No 302
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=82.58 E-value=19 Score=35.12 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=80.4
Q ss_pred CCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCC
Q 016155 172 PPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 250 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~ 250 (394)
...|+.+|||+=.-++.|... |..+.-+|+-..+ ..-+.++.....
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~-~~K~~~l~~~~~-------------------------------- 128 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVL-AFKEKVLAELGA-------------------------------- 128 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHH-HHHHHHHHHcCC--------------------------------
Confidence 346999999999999988643 4555556665533 222222221100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCcc-----EEEE-e--cccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch
Q 016155 251 PASAGITEGFSMCGGDFVEVYSDPSQVGAWD-----AVVT-C--FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY 320 (394)
Q Consensus 251 p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD-----~VvT-~--fFlDta~ni~~yl~~I~~~LKpGG~wIN--~GPLly 320 (394)
....+..++..|+.+-....-....|| +++. + +||+.. .+...|+.|.+...||+.++- ++|+.-
T Consensus 129 ----~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~~~~~ 203 (260)
T TIGR00027 129 ----EPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVRPLDG 203 (260)
T ss_pred ----CCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEeccccch
Confidence 011235666667642100000011233 2221 1 466655 488899999998889888774 455310
Q ss_pred ---h--hhh---c-cCC-CCCccccCCHHHHHHHHHhCCCEEEEE
Q 016155 321 ---H--FAD---L-YGQ-EDEMSIELSLEDVKRVALHYGFEFEKE 355 (394)
Q Consensus 321 ---h--~~~---~-~g~-~~~~~ieLS~eEl~~ll~~~GF~ii~e 355 (394)
. ... . .+. .......++.+|+..++...||+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 204 EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred hHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 000 0 000 111234578999999999999998764
No 303
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=82.52 E-value=1.2 Score=47.59 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=34.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 172 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+.-+||+-||||-++..+|+.--.|.|+|+|...+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 457899999999999999999899999999999886555
No 304
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.42 E-value=3.7 Score=40.18 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=28.4
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHH
Q 016155 173 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMM 206 (394)
Q Consensus 173 ~~VLvpGC--GlGRLa~eLA~~-Gf-~v~G~D~S~~ML 206 (394)
.+||+-|+ |+|.++..+|+. |. .|.+++-|..-+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC 193 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 79999985 799999988876 98 799998887654
No 305
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.34 E-value=5.6 Score=35.57 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred ccEEEEecccCChhhHHHHHHH--HHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 280 WDAVVTCFFIDTAHNIVEYIEI--ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 280 fD~VvT~fFlDta~ni~~yl~~--I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
-|+|++|.. ....+.+.+.. +...|++|-++|+.+..-. -+..++.+.+.+.|...+.-.
T Consensus 58 ~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p---------------~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 58 ADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIIDMSTISP---------------ETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp BSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H---------------HHHHHHHHHHHHTTEEEEEEE
T ss_pred ccceEeecc--cchhhhhhhhhhHHhhccccceEEEecCCcch---------------hhhhhhhhhhhhccceeeeee
Confidence 488888654 33446677787 9999999999998544311 134567777778898877743
No 306
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=82.17 E-value=6.3 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+|++.|+|. |+. |..+...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999985 443 23333458899999887643
No 307
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=81.59 E-value=2 Score=45.86 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=45.7
Q ss_pred CCCCccEEEEecc----cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 016155 276 QVGAWDAVVTCFF----IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 351 (394)
Q Consensus 276 ~~~~fD~VvT~fF----lDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~eEl~~ll~~~GF~ 351 (394)
...+||+|-.... .+. -++.+.+-+|-|+|+|||..|- .|. .--.++++.+++.+.|+
T Consensus 424 YPRTYDLlHA~~lfs~~~~r-C~~~~illEmDRILRP~G~~ii--------RD~---------~~vl~~v~~i~~~lrW~ 485 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDR-CEMEDILLEMDRILRPGGWVII--------RDT---------VDVLEKVKKIAKSLRWE 485 (506)
T ss_pred CCcchhheehhhhhhhhccc-ccHHHHHHHhHhhcCCCceEEE--------ecc---------HHHHHHHHHHHHhCcce
Confidence 4588998875532 233 4588899999999999999983 111 11468899999999998
Q ss_pred EEEEe
Q 016155 352 FEKEK 356 (394)
Q Consensus 352 ii~e~ 356 (394)
.....
T Consensus 486 ~~~~d 490 (506)
T PF03141_consen 486 VRIHD 490 (506)
T ss_pred EEEEe
Confidence 76544
No 308
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.24 E-value=3 Score=38.23 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCC--CCh-hHHHHHHcCCeEEEEeCCH
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAG--LGR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCG--lGR-La~eLA~~Gf~v~G~D~S~ 203 (394)
+++.+++.+.+. .+.+||++|.| .|. ++..|..+|..|+..+-..
T Consensus 31 ~v~l~~~~~~~l---~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDL---AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 455566655432 68899999999 388 7888899999887666543
No 309
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=81.23 E-value=5.3 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~-----g-~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----G-IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----C-CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987654 1 12357888899999999999874
No 310
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.90 E-value=9.6 Score=37.45 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+-|+|. |.++..+|+. |.. |.+.+-+.....
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 677899887765 7788888776 887 888888776653
No 311
>PRK13699 putative methylase; Provisional
Probab=80.47 E-value=5.7 Score=38.02 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
++..||||=||.|..+..-.+.|....|+|++......+.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 5779999999999999999999999999999998876554
No 312
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=80.12 E-value=7.7 Score=38.07 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=25.8
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
+.+|+|+.+..- ...+..+.++|+++|++|.+|.
T Consensus 229 ~~~d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 229 EGVDVFLEMSGA------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhcCCCEEEEEcc
Confidence 458999876331 1457788999999999999875
No 313
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.02 E-value=1.3 Score=37.07 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCc
Q 016155 181 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 259 (394)
Q Consensus 181 GlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ 259 (394)
|.|.++..+|+. |..|.++|.+..=+..++-+ .+. .. +.. . .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~--Ga~----~~----~~~-------~-----------~--------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL--GAD----HV----IDY-------S-----------D--------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TES----EE----EET-------T-----------T---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh--ccc----cc----ccc-------c-----------c---------
Confidence 578888888776 99999999999766443311 000 00 000 0 0
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 260 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 260 ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
.. ......++.. ...+|+|+.| .. ....++...++|+|||+++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0011123322 2579999654 22 23688999999999999998763
No 314
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=79.99 E-value=3 Score=44.28 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=38.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHhhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~s~filn 214 (394)
.+.-|||+|.|||-|+..-++.|. .|||+|.=-.|.-+|+.|..
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHh
Confidence 556789999999999999999986 49999999999999998864
No 315
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=79.93 E-value=7.6 Score=37.94 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf~-v~G~D~S~~ML 206 (394)
++.+||+.|+|. |..+..+|+. |.. |.++.-+..+.
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~ 197 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKL 197 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 567899988765 7777777664 887 88988877665
No 316
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.86 E-value=11 Score=39.28 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=29.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
.+|-++|.|.-.+ |..|+++||.|+|.|.+..-+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4799999997544 6778899999999999987664
No 317
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.48 E-value=10 Score=38.18 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~M 205 (394)
.+.+||+.| .|.|.++..||+. |+.+.+.--|..=
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k 179 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEK 179 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHH
Confidence 578999998 5789999999887 7677776666643
No 318
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=79.41 E-value=35 Score=32.59 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=73.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHhhhhhcccccccccc
Q 016155 151 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNI 224 (394)
Q Consensus 151 ~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~------Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i 224 (394)
..|+.++-++ ++..|++.|.=-|.=+..+|.. .-.|.|+|+...-. |.. .+.-
T Consensus 22 ~~~qeli~~~----------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-------~~~----a~e~ 80 (206)
T PF04989_consen 22 VAYQELIWEL----------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-------NRK----AIES 80 (206)
T ss_dssp HHHHHHHHHH------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---------S-----GGGG
T ss_pred HHHHHHHHHh----------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-------chH----HHhh
Confidence 3455566655 3568999999998887766643 25899999864222 110 0110
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCC--CCCccEEEEecccCCh---hhHH
Q 016155 225 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQ--VGAWDAVVTCFFIDTA---HNIV 296 (394)
Q Consensus 225 ~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~---~~~--~~~fD~VvT~fFlDta---~ni~ 296 (394)
|| ...+++|++||-.+.-.. ... ...-.+| .+|-. .++.
T Consensus 81 hp-----------------------------~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlV----ilDs~H~~~hvl 127 (206)
T PF04989_consen 81 HP-----------------------------MSPRITFIQGDSIDPEIVDQVRELASPPHPVLV----ILDSSHTHEHVL 127 (206)
T ss_dssp ---------------------------------TTEEEEES-SSSTHHHHTSGSS----SSEEE----EESS----SSHH
T ss_pred cc-----------------------------ccCceEEEECCCCCHHHHHHHHHhhccCCceEE----EECCCccHHHHH
Confidence 11 124589999997653210 000 1111222 24433 6788
Q ss_pred HHHHHHHHhccCCcEEEEecCcchhhhhcc-CCCCCccccCCHHHHHHHHHhCC-CEEEE
Q 016155 297 EYIEIISRILKDGGVWINLGPLLYHFADLY-GQEDEMSIELSLEDVKRVALHYG-FEFEK 354 (394)
Q Consensus 297 ~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~-g~~~~~~ieLS~eEl~~ll~~~G-F~ii~ 354 (394)
.-|+....+|+||+++|-......++.... ...+-..-.-..+.+.+.+.+.. |++.+
T Consensus 128 ~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 128 AELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp HHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred HHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 999999999999999996554444433321 00110000125677888887544 76664
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.24 E-value=5.3 Score=40.04 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a 232 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA 232 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH
Confidence 56799999875 36666667664 88 599999988776443
No 320
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.03 E-value=7.3 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~ 176 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV 176 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 6789999984 689999888876 88999988887654
No 321
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=78.97 E-value=1.8 Score=40.09 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=32.1
Q ss_pred EEecccccccCCCCCCCCccEEEEeccc------------CChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 262 MCGGDFVEVYSDPSQVGAWDAVVTCFFI------------DTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 262 ~~~GDf~ely~~~~~~~~fD~VvT~fFl------------Dta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
+...||..-+. ...++||.+++.-.| |..-+ .+.+..|.++|||||.+.--
T Consensus 48 i~p~df~~~~~--~y~~~fD~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 48 ILPVDFAKNWQ--KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccHHHHHHHHH--HhhccchhhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEE
Confidence 34455553221 134789998877533 33333 35577888999999999853
No 322
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=78.80 E-value=55 Score=32.11 Aligned_cols=131 Identities=19% Similarity=0.137 Sum_probs=68.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 171 SPPACLVPGAG-LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
.+.+||++|=+ +-.||..|....-+|+.+|+..-+|. ||-..+.+ ..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~---fI~~~a~~-~g---------------------------- 91 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD---FINRVAEE-EG---------------------------- 91 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH---HHHHHHHH-HT----------------------------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH---HHHHHHHH-cC----------------------------
Confidence 57799999954 33456666666789999999999985 33222211 10
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
-.+.....|+++-.+ +.-.++||+++|-= -.|.+.+.-++..-...||.-|-.+- +.|... +
T Consensus 92 --------l~i~~~~~DlR~~LP-~~~~~~fD~f~TDP-PyT~~G~~LFlsRgi~~Lk~~g~~gy-----~~~~~~---~ 153 (243)
T PF01861_consen 92 --------LPIEAVHYDLRDPLP-EELRGKFDVFFTDP-PYTPEGLKLFLSRGIEALKGEGCAGY-----FGFTHK---E 153 (243)
T ss_dssp ----------EEEE---TTS----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEE-----EEE-TT---T
T ss_pred --------CceEEEEecccccCC-HHHhcCCCEEEeCC-CCCHHHHHHHHHHHHHHhCCCCceEE-----EEEecC---c
Confidence 115667778776332 23468999887620 11556777889999999998664332 122211 0
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEK 354 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~ 354 (394)
+ + .--+-++.+.+..+||.+..
T Consensus 154 ~--s-~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 154 A--S-PDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -----HHHHHHHHHHHHTS--EEEE
T ss_pred C--c-HHHHHHHHHHHHHCCcCHHH
Confidence 0 1 11234788888899999887
No 323
>PLN02712 arogenate dehydrogenase
Probab=78.75 E-value=11 Score=41.94 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=28.2
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 016155 171 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 171 ~~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ 204 (394)
.+.+|.++|+|. |.++..|.+.|+.|.+.|-+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 557899999887 6678888888999999998743
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.61 E-value=6.7 Score=41.00 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~-Gf~v~G~D~S~~ML~~s~fil 213 (394)
.-..|.|+|+|-|+|+..|+-. |..|.|+|-|-.....|+.+-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHH
Confidence 3457999999999999999755 889999999977666666553
No 325
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=78.08 E-value=4 Score=40.97 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=25.2
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGR-La~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|.| .|+ +|..|...|+.|.+.|.+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56799999988 475 4666777799999988653
No 326
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=76.81 E-value=32 Score=33.88 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~ 36 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAV 36 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 578899886 457888899999999999998764
No 327
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.68 E-value=2.8 Score=44.31 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEe
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNE 200 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D 200 (394)
...|+|+|+|.|.| |..||++|++|+-.|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEE
Confidence 35799999999999 678899999999988
No 328
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=76.49 E-value=6.2 Score=39.31 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=26.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML 206 (394)
++.+||+-|+| +|.++..+|+. |.. |.+++-+....
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~ 225 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKL 225 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 56688888775 77777777665 887 88888776654
No 329
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.43 E-value=7.8 Score=38.20 Aligned_cols=37 Identities=24% Similarity=0.066 Sum_probs=26.7
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA-GLGRLALEISHL-GF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC-GlGRLa~eLA~~-Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ ++|.++..+|+. |+ .|.+.+-+...+.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~ 211 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE 211 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 5678888875 356666666655 88 7889888877654
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.38 E-value=10 Score=37.12 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=26.5
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| .|.++..+|+ +|.. |.+++-+..-+.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~ 202 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE 202 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 57799999874 4555556655 4888 999998876553
No 331
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.14 E-value=7.9 Score=37.21 Aligned_cols=38 Identities=26% Similarity=0.121 Sum_probs=27.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| +|.++..+|+. |.. |.++|.+..-+..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL 160 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 56789999874 56666666654 886 8888988766543
No 332
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=76.08 E-value=7 Score=40.40 Aligned_cols=98 Identities=19% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHhhh--hhccccccccccccccccccCCCCcccCccccc
Q 016155 171 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 245 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML~~s~fi--ln~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~ 245 (394)
.+.+|||+=+|+|-=+...|+. | -.|+.||+|...+...+.- +|...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---------------------------- 100 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---------------------------- 100 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------------------------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------------------------
Confidence 3568999999999666666655 3 5799999999977443321 11110
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 246 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 246 iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+.+.+...|...+.. ...+.||+| -||.---...||+...+.+|.||++.
T Consensus 101 -----------~~~~~v~~~DAn~ll~--~~~~~fD~I----DlDPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 101 -----------DERIEVSNMDANVLLY--SRQERFDVI----DLDPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -----------GCCEEEEES-HHHHHC--HSTT-EEEE----EE--SS--HHHHHHHHHHEEEEEEEE
T ss_pred -----------CceEEEehhhHHHHhh--hccccCCEE----EeCCCCCccHhHHHHHHHhhcCCEEE
Confidence 0125667777766542 135789988 35655556789999999999999997
No 333
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=75.60 E-value=13 Score=39.03 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCCeEEEecCCC-ChhHH-HHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRLAL-EISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~-eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+|++.|+|. |+... .+...|..|.++|.+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r 230 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIR 230 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhh
Confidence 577999999996 55533 334458899999988754
No 334
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.32 E-value=10 Score=40.00 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=25.5
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~ML 206 (394)
.+.+|++.|+|. |+. +..+...|..|..+|.+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 577999999974 333 233445589999999987553
No 335
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=75.12 E-value=12 Score=37.94 Aligned_cols=40 Identities=10% Similarity=-0.175 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHh
Q 016155 171 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 210 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~--Gf~v~G~D~S~~ML~~s~ 210 (394)
++..+||-=-|.|..+..|.++ +-.+.|+|-...|+..+.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK 61 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence 5678999999999999999876 568999999999996544
No 336
>PRK06436 glycerate dehydrogenase; Provisional
Probab=74.93 E-value=6.4 Score=39.38 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S 202 (394)
.+.+|.++|.|. |+- |..+...|+.|.+.|-+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 578999999984 764 54444559999999876
No 337
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=74.73 E-value=11 Score=36.68 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML 206 (394)
++.+||+-|+| +|.++..+|++ |.. |.++.-+....
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~ 203 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRL 203 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 56789998875 77777777765 888 88887777655
No 338
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=74.18 E-value=15 Score=35.24 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~~ 208 (394)
.+++|||.|+|.|=-+..-|+.|. .|.+.|+....+.+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~a 117 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQA 117 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHH
Confidence 678999999999999999999996 57788888665543
No 339
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.15 E-value=3.7 Score=41.69 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGR-La~eLA~~Gf-~v~G~D~S~ 203 (394)
...+||++||| +|. ++..||+.|. .++-+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45689999999 555 4788899998 788899886
No 340
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.91 E-value=5.2 Score=37.82 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
++.+|.+.+|.. +..+++||=||.|..++.+...+..|..||+...-..+.+.++
T Consensus 8 l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 8 LAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 677788888842 4679999999999999999889999999999998887777343
No 341
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=73.69 E-value=3.1 Score=40.08 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=24.1
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.|+++|+|.+.+ |..|+++|++|+-+|-+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 699999999988 677899999999998654
No 342
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.62 E-value=12 Score=35.89 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ ++|.++..+|+. |..+....-|.....
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 179 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVD 179 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5678999874 689998888765 888777777776653
No 343
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.41 E-value=6.3 Score=39.66 Aligned_cols=52 Identities=29% Similarity=0.298 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCCCC-CCCCeEEEec--CCCChh-HHHHHHcCCeEEEEeCCHHHH
Q 016155 155 PILEELDALFPNRSK-ESPPACLVPG--AGLGRL-ALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 155 pIl~~L~~~~p~~~~-~~~~~VLvpG--CGlGRL-a~eLA~~Gf~v~G~D~S~~ML 206 (394)
-++..+..++|.... -++..||.=| .|+||+ |.|+|++|..+.-.|+...-.
T Consensus 20 ~~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201|consen 20 LLESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred HHHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch
Confidence 344555555554221 2678888875 567887 999999999888888766554
No 344
>PRK11524 putative methyltransferase; Provisional
Probab=73.29 E-value=11 Score=36.95 Aligned_cols=54 Identities=19% Similarity=-0.007 Sum_probs=43.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf~v~G~D~S~~ML~~s~fil 213 (394)
+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++..-...|..-+
T Consensus 197 L~erlI~~~S~----~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 197 LLKRIILASSN----PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 55555555432 6789999999999999999999999999999998876655444
No 345
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=73.10 E-value=11 Score=37.59 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~~-Gf-~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+|. |.++..+|+. |. .+.+++.+...+..+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~ 227 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELA 227 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 567899887753 6777777664 88 599999998776543
No 346
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.87 E-value=14 Score=38.21 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.3
Q ss_pred eEEEecCC-CC-hhHHHHHHcCCeEEEEeCCHHHHH
Q 016155 174 ACLVPGAG-LG-RLALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 174 ~VLvpGCG-lG-RLa~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+|-++|.| .| .+|..|| .||.|+|+|.+..-+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~ 36 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVA 36 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHH
Confidence 57788888 55 4466666 4999999999998764
No 347
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.82 E-value=16 Score=35.95 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=27.3
Q ss_pred CeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHH
Q 016155 173 PACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMM 206 (394)
Q Consensus 173 ~~VLvpGCGl--GRLa~eLA~~Gf--~v~G~D~S~~ML 206 (394)
.+|.++|+|. +.++..|++.|+ .|++.|.+..-+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~ 44 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETR 44 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHH
Confidence 5799999987 446777888885 899999998654
No 348
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=72.80 E-value=11 Score=38.26 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred HhhchHHHHHHHHhhCCCCC----------CCCCCeEEEecCCCChhHHHHHHcC----------------------CeE
Q 016155 149 RDQCYKPILEELDALFPNRS----------KESPPACLVPGAGLGRLALEISHLG----------------------FIS 196 (394)
Q Consensus 149 R~~~y~pIl~~L~~~~p~~~----------~~~~~~VLvpGCGlGRLa~eLA~~G----------------------f~v 196 (394)
|..||.-|+..|.++..... .++..+||.+|-|.|--...||..= ..+
T Consensus 54 RAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~i 133 (315)
T PF11312_consen 54 RALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSI 133 (315)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceE
Confidence 56689999988877654211 1234799999999987655554332 367
Q ss_pred EEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC--
Q 016155 197 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-- 274 (394)
Q Consensus 197 ~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~-- 274 (394)
+.+|+..---.+.+ |+.+ ++--|-+.++.+. ...|.+.+ ..-++.|.+.|.+.+....
T Consensus 134 tlvDiAdWs~VV~~--L~~~-----i~s~p~~sk~a~~---------~~~~~~~~----~~~~~~F~~~DvL~~~~~~l~ 193 (315)
T PF11312_consen 134 TLVDIADWSSVVDR--LTTT-----ITSPPPLSKYASA---------ANWPLIEP----DRFNVSFTQQDVLSLSEDDLK 193 (315)
T ss_pred EEEEecChHHHHHH--HHHh-----ccCCCCccccccc---------cccccCCc----cceeeeEEecccccCChHHHH
Confidence 77877543333222 1111 1111212111110 00111111 1224789999988764310
Q ss_pred --CCCCCccEEEEecc------cCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 275 --SQVGAWDAVVTCFF------IDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 275 --~~~~~fD~VvT~fF------lDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.....-++| |.+| ..-...-..+|..+...++||-+++-+
T Consensus 194 ~ll~~~~~~LI-TLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 194 SLLGPPSPDLI-TLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred HHhccchhHHH-HHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 000123444 5544 233334557899999999999998753
No 349
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=72.79 E-value=1.8 Score=41.55 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHhhhhh
Q 016155 171 SPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf~--v~G~D~S~~ML~~s~filn 214 (394)
+...+.|+|||-|.|..+|+-+--+ +.|.|+=. -++.|+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~---KVsdYVk~ 102 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD---KVSDYVKE 102 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhH---HHHHHHHH
Confidence 4578999999999999999998643 56777643 33455443
No 350
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=72.68 E-value=3.4 Score=43.29 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.3
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+|+++|+|.|.| |..||++|++|+-+|-.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~ 33 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH 33 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4699999999999 67789999999998855
No 351
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=72.67 E-value=23 Score=36.30 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred CcchHHHHHHHHHHhhcCccc-C--hhHHhhchHHHHHHHHh-----hCCCCCCCCCCeEEEec-CCC--ChhHHHHHHc
Q 016155 124 LADVDKVRCIIRNIVRDWAAE-G--KTERDQCYKPILEELDA-----LFPNRSKESPPACLVPG-AGL--GRLALEISHL 192 (394)
Q Consensus 124 ~~d~~kv~~~L~q~~RDWS~e-g--~~ER~~~y~pIl~~L~~-----~~p~~~~~~~~~VLvpG-CGl--GRLa~eLA~~ 192 (394)
-.|-++....|..+ +.|+.+ | ...=+..|..|++.-.. .+... .....+|.++| .|+ |.+|..|++.
T Consensus 44 v~d~~Re~~vl~~~-~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~-~~~~~~I~IiGG~GlmG~slA~~l~~~ 121 (374)
T PRK11199 44 IYVPEREAAMLASR-RAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTL-NPDLRPVVIVGGKGQLGRLFAKMLTLS 121 (374)
T ss_pred CCChHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhccccc-CcccceEEEEcCCChhhHHHHHHHHHC
Confidence 35556666666555 335542 2 22224456666644332 11111 11346899998 666 6667888888
Q ss_pred CCeEEEEeCCH
Q 016155 193 GFISQGNEFSY 203 (394)
Q Consensus 193 Gf~v~G~D~S~ 203 (394)
|+.|++.|.+.
T Consensus 122 G~~V~~~d~~~ 132 (374)
T PRK11199 122 GYQVRILEQDD 132 (374)
T ss_pred CCeEEEeCCCc
Confidence 99999999753
No 352
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=72.09 E-value=3.7 Score=40.91 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHH
Q 016155 155 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMM 206 (394)
Q Consensus 155 pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G-f~v~G~D~S~~ML 206 (394)
.+++.|.+.+...-.-.+++||++|||.|-........| ..|...|+|..-|
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 355555543311111267899999999999999999999 7888999998665
No 353
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=71.92 E-value=4.3 Score=37.90 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGR-La~eLA~~Gf-~v~G~D~S~ 203 (394)
.+.+||++||| +|. .+..|+..|. .++-+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45689999998 565 4788899998 788888764
No 354
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.77 E-value=22 Score=34.69 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~ 203 (394)
++.+||+.|+ ++|..+..+|+. |..|.++.-+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence 5789999997 678887777665 88888887543
No 355
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=71.38 E-value=4.8 Score=40.90 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGR-La~eLA~~Gf-~v~G~D~S~ 203 (394)
...+||++||| +|. ++..||..|. .++-+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999 565 4788999998 799999875
No 356
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=71.14 E-value=27 Score=34.02 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=25.1
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. ..++..|++.|+.|++.|.+..-+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~ 35 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVA 35 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 367787776 336777888899999999997554
No 357
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.12 E-value=20 Score=33.01 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRL-a~eLA~~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ |.|+. +..|+++|+.|.+.+-+..-+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEA 44 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4568999996 34433 455667899999988776544
No 358
>PRK10083 putative oxidoreductase; Provisional
Probab=70.71 E-value=19 Score=35.12 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH--cCCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH--LGFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~--~Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|.++..+|+ +|.. +.+++.+..-+.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~ 200 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLA 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 56799999864 4556677777 3985 778888776654
No 359
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=70.69 E-value=22 Score=34.26 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=26.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICS 209 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~v~G~D~S~~ML~~s 209 (394)
++.+||+.|+| +|.++..+|+ +|..|.++.-+...+..+
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~ 195 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA 195 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 56789998753 4445555544 399999999888776433
No 360
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=70.48 E-value=25 Score=33.12 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEEeC
Q 016155 171 SPPACLVPGAGLG--RLALEISHLGFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGlG--RLa~eLA~~Gf~v~G~D~ 201 (394)
.+.+||++|.|.= |-+..|.+.|..|+-++-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4679999999953 446778889999887754
No 361
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.12 E-value=14 Score=36.40 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCe-EEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGFI-SQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf~-v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| +|.++..+|+ +|.. |.+++-+..-+..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 56799999875 4556666665 4886 6888888776543
No 362
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.05 E-value=13 Score=33.61 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCcEEE-EecCcchhhhhccCCCCCccccCCHHHHHH-HHHhCC-CEEEEEe-eccc-cCCCCcccc
Q 016155 295 IVEYIEIISRILKDGGVWI-NLGPLLYHFADLYGQEDEMSIELSLEDVKR-VALHYG-FEFEKEK-TIET-TYTTNPRSM 369 (394)
Q Consensus 295 i~~yl~~I~~~LKpGG~wI-N~GPLlyh~~~~~g~~~~~~ieLS~eEl~~-ll~~~G-F~ii~e~-~i~~-~Y~~d~~sm 369 (394)
+.+++..++++|||||.++ +++....+ . .+.. +++..| |.+...- +... .......-.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~---------------~--~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~ 97 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIA---------------G--FLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKR 97 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEEC---------------T--HHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhh---------------H--HHHHHHHHHhhhhheeccceeEecCccccccccc
Confidence 5677899999999999975 44433211 0 2333 344457 8877643 2222 333333224
Q ss_pred cccccceEEEEEEEc
Q 016155 370 MQNRYFTAFWTMRKK 384 (394)
Q Consensus 370 ~~~~Y~~~f~va~K~ 384 (394)
....+..++|.++.+
T Consensus 98 ~~~~~E~il~~~K~~ 112 (231)
T PF01555_consen 98 FSNSHEYILVFSKDK 112 (231)
T ss_dssp -B--EEEEEEEESST
T ss_pred cccchhhhhcccccc
Confidence 455555555544443
No 363
>PRK07233 hypothetical protein; Provisional
Probab=69.46 E-value=3.9 Score=41.22 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
+|+++|+|.+.| |+.|+++|++|+-+|-.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC
Confidence 589999999999 67899999999877644
No 364
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=69.25 E-value=16 Score=36.18 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCH
Q 016155 170 ESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSY 203 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~-G--f~v~G~D~S~ 203 (394)
.++.+||-+|++.|+-+-.++.- | =-|+++|||.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 37889999999999998777765 3 3588999986
No 365
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.88 E-value=22 Score=35.74 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~M 205 (394)
++.+||+.|+| +|.++..+|+. |..|.+++.+..-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 56789998875 56666777655 8888888776543
No 366
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=68.82 E-value=14 Score=39.36 Aligned_cols=61 Identities=16% Similarity=-0.039 Sum_probs=39.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--C--CeEEEEeCCHHHHHHHhhh
Q 016155 152 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--G--FISQGNEFSYYMMICSSFI 212 (394)
Q Consensus 152 ~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~--G--f~v~G~D~S~~ML~~s~fi 212 (394)
.|.+++..++.+--.........+++.|.|+|.-.+.+..+ + ..+.-||-|-.|+..+.-.
T Consensus 181 gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~ 245 (491)
T KOG2539|consen 181 GYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN 245 (491)
T ss_pred chHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh
Confidence 67777766654321122235678889999988765555444 2 5678899999999765533
No 367
>PRK07574 formate dehydrogenase; Provisional
Probab=68.62 E-value=14 Score=38.27 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|.|. |+. |..|...|+.|.+.|-+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 567899999884 653 555566689999988764
No 368
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.61 E-value=15 Score=36.53 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|..+..+|+. |+. |.+++-+.....
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~ 221 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE 221 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 56789988775 67776666655 886 888877776553
No 369
>PLN02256 arogenate dehydrogenase
Probab=68.49 E-value=29 Score=34.75 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~ 203 (394)
...+|.++|+|. |.++..|.+.|+.|.+.|-+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 556899999885 446777778899999999885
No 370
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=68.45 E-value=23 Score=34.79 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=26.9
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA-GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC-GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ ++|..+..+|+. |..+.+++-+...+.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~ 207 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKE 207 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 5678998877 456666666554 899999988876654
No 371
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=68.39 E-value=25 Score=33.82 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
.+.+||+.|+ ++|.++..+|+. |..|..++-+..-.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~ 184 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAA 184 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 3568999986 677777777764 99999888877654
No 372
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=68.35 E-value=4.9 Score=46.54 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~ 201 (394)
.+.+|+++|.|-+.| |+.|+++||.|+.+|-
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 678999999999888 8899999999999994
No 373
>PRK13243 glyoxylate reductase; Reviewed
Probab=68.19 E-value=13 Score=37.54 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=24.9
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|.|. |+ +|..|...|+.|.+.|-+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 578999999976 54 4555566688999988764
No 374
>PHA01634 hypothetical protein
Probab=68.06 E-value=8.4 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~Gf-~v~G~D~S~~ML~ 207 (394)
.+.+|||+|++.|--|..++.+|. .|.++|-+..+.-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k 65 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRK 65 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHH
Confidence 678999999999999999999997 5999999998864
No 375
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.88 E-value=22 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRL-a~eLA~~Gf~v~G~D~S~~ML 206 (394)
.+..||+.|+ |+|+. +..|+++|+.|.++.-+..-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 4567889987 45543 556778899999988776543
No 376
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=67.60 E-value=20 Score=34.13 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|. |.|..+..+++ .|+.|...+.+..-+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~ 204 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL 204 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678998886 57777766655 589998888776544
No 377
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=67.38 E-value=23 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=27.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. +.++..|++.|+.|++.|.+..-+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~ 37 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAV 37 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 688898886 667888889999999999987554
No 378
>PRK08507 prephenate dehydrogenase; Validated
Probab=67.13 E-value=29 Score=33.62 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=26.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf--~v~G~D~S~~ML 206 (394)
+|.++|+|. |.++..|++.|+ .|.+.|.+..-+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~ 38 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHL 38 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 688999887 667888888896 789999987644
No 379
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=66.78 E-value=78 Score=31.12 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=27.1
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. ..++..|++.|+.|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~ 36 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAV 36 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 588898885 447888899999999999997554
No 380
>PRK08655 prephenate dehydrogenase; Provisional
Probab=66.26 E-value=21 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=25.7
Q ss_pred eEEEec-CC-CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPG-AG-LGR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpG-CG-lGR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|+++| +| .|+ ++..|...|+.|++.+.+...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHH
Confidence 688997 56 454 6777888899999999887553
No 381
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=66.12 E-value=28 Score=34.07 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA~-~Gf-~v~G~D~S~~ML~ 207 (394)
++.+||+-|+|. |..+..+|+ +|. .+.+++-|..-+.
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 202 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLE 202 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567888877754 777777776 488 5777777765543
No 382
>PRK06475 salicylate hydroxylase; Provisional
Probab=65.84 E-value=5.6 Score=40.38 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.4
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+|+++|+|.+.| |..|+++|+.|+-+|-.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 6899999999997 55668889999988844
No 383
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=65.49 E-value=37 Score=32.22 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
.+.+||+.|+ ++|..+..+|+. |..|.+.+-+..-+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~ 170 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARA 170 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4679999987 688887777665 88998888776554
No 384
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=65.43 E-value=42 Score=33.18 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf-~v~G~D~S~~ML 206 (394)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~ 215 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL 215 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 56789988754 45555566555 88 899998877654
No 385
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=65.03 E-value=36 Score=32.20 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCC
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S 202 (394)
++.+||+.|+ ++|..+..+|+. |.+|.+++-+
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~ 177 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST 177 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH
Confidence 5679999997 578888888775 8999888744
No 386
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=64.97 E-value=1.4e+02 Score=29.03 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=75.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCC
Q 016155 172 PPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 249 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv 249 (394)
..++.|+||-=|+|+.+|.+.+- .+++.|++.-.+..|.-.....
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--------------------------------- 63 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--------------------------------- 63 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc---------------------------------
Confidence 44599999999999999999985 5778999998886553221110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 016155 250 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 329 (394)
Q Consensus 250 ~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~ 329 (394)
.....++...||-+.... ....+|+||-+=. -+.-|.+.|++-.+-|+.==.+|- +
T Consensus 64 -----~l~~~i~vr~~dgl~~l~---~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlIL--------------Q 119 (226)
T COG2384 64 -----NLSERIDVRLGDGLAVLE---LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLIL--------------Q 119 (226)
T ss_pred -----CCcceEEEeccCCccccC---ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEEE--------------C
Confidence 111235556666544332 2347888775421 011133334444443432122321 1
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 016155 330 DEMSIELSLEDVKRVALHYGFEFEKEK 356 (394)
Q Consensus 330 ~~~~ieLS~eEl~~ll~~~GF~ii~e~ 356 (394)
| .-...+|++.+...+|+++.|.
T Consensus 120 P----n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 120 P----NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred C----CCCHHHHHHHHHhCCceeeeee
Confidence 1 2367899999999999999876
No 387
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=64.81 E-value=26 Score=34.31 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCeEEEecC-CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA-GLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC-GlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ ++|.++..+|+ +|..|.++.-|....
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~ 202 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKL 202 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 5678999987 35666666666 489999998887664
No 388
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.60 E-value=60 Score=33.01 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHhhhh
Q 016155 156 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFIL 213 (394)
Q Consensus 156 Il~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~G---f~v~G~D~S~~ML~~s~fil 213 (394)
++++.-+.+... +....||-==|.|..+..|-..+ -.++|+|-...+|..|+-++
T Consensus 11 Ll~E~i~~L~~~---~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 11 LLNEVVELLAPK---PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred HHHHHHHhcccC---CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 444554444332 45788999999999999887775 46999999999998877544
No 389
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.53 E-value=88 Score=30.75 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=25.9
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|. ..++..|++.|+.|++.|.+...+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~ 36 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAV 36 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 577888775 456777888899999999987654
No 390
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=64.49 E-value=4.7 Score=42.26 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.3
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 175 CLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 175 VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
|+++|+|.|.| |..||+.|++|+-+|-.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~ 30 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR 30 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 68999999999 67789999999988744
No 391
>PRK07236 hypothetical protein; Provisional
Probab=64.13 E-value=6.7 Score=39.53 Aligned_cols=33 Identities=36% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
...+|+++|+|.+.| |..|++.|+.|+-+|-+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 457899999999987 677889999999998654
No 392
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=64.12 E-value=44 Score=31.27 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
++.+||+.|+ ++|..+..+|+. |+.|.+.+-+.....
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 175 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE 175 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5678999994 588888777665 999999888876653
No 393
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.10 E-value=31 Score=32.65 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ ++|.++..+|+. |+.|.++.-+..-.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~ 180 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERA 180 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5679999885 789998888766 89998888776544
No 394
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.64 E-value=26 Score=36.44 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHH--HhhhhhccccccccccccccccccCCCCcccCccccccC
Q 016155 172 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMIC--SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 247 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eLA~~-Gf-~v~G~D~S~~ML~~--s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iP 247 (394)
..+|||+=+|+|-=+..+|.. |. .|+.||+|+..... .|..+|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------------------------- 101 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------------------------- 101 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-------------------------------
Confidence 568999999999777766655 55 79999999977643 33323310
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 016155 248 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 313 (394)
Q Consensus 248 Dv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wI 313 (394)
.+...+..|...+.. .....||+| =||.--...-|++...+.+|.||++-
T Consensus 102 ----------~~~~v~n~DAN~lm~--~~~~~fd~I----DiDPFGSPaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 102 ----------EDAEVINKDANALLH--ELHRAFDVI----DIDPFGSPAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred ----------ccceeecchHHHHHH--hcCCCccEE----ecCCCCCCchHHHHHHHHhhcCCEEE
Confidence 112223345444332 123567765 24544446678999999999999986
No 395
>PLN02985 squalene monooxygenase
Probab=63.45 E-value=7.5 Score=41.60 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHhhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 132 CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 132 ~~L~q~~RDWS~eg~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
+||.-|+-.|.--.--.|+.. ..+.++..-| ........|+++|+|.+.+ |..|++.|++|+-+|-+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 7 WTLLAFVLTWTVFYVTNRKKK---ATELADAVAE-ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---hcchhhhhcc-cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 677777777865333233221 1122222212 1222556899999999887 56689999999999865
No 396
>PLN03139 formate dehydrogenase; Provisional
Probab=63.34 E-value=22 Score=37.02 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=23.4
Q ss_pred CccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEEEec
Q 016155 279 AWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWINLG 316 (394)
Q Consensus 279 ~fD~VvT~fFlDta-~ni~~yl~~I~~~LKpGG~wIN~G 316 (394)
.-|+|+.+.=+... .+++ =+.+...+|||.+|||.+
T Consensus 255 ~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLIVNNA 291 (386)
T ss_pred hCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEEEECC
Confidence 35888776533221 2233 256788899999999964
No 397
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=63.31 E-value=58 Score=32.32 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=25.2
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~S~~M 205 (394)
.+.+||++|.|. |+. +..|..+|..|+..|-+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 467999999874 222 34445569999999999654
No 398
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=63.06 E-value=42 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=24.5
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~ 203 (394)
++.+||+.|+ ++|..+..+|+ .|..|..+.-+.
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~ 179 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA 179 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch
Confidence 5679999986 57777666655 489988877665
No 399
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=62.77 E-value=6.6 Score=29.58 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=23.5
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 016155 288 FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 319 (394)
Q Consensus 288 FlDta~ni~~yl~~I~~~LKpGG~wIN~GPLl 319 (394)
|||..+.+.+++. ...-.+.||.+||.|||-
T Consensus 24 FIDDsE~~de~~~-~~~~~~~~GFfv~~G~le 54 (55)
T PF08729_consen 24 FIDDSEAYDEYVP-DNVTTKHGGFFVNSGELE 54 (55)
T ss_pred CcCCHHHHhhhhh-hhhhhhcCCceEeccccc
Confidence 7888874545554 556678999999999984
No 400
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=62.70 E-value=29 Score=34.46 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeE--EEEeCCHHHHHH
Q 016155 172 PPACLVPGAGL--GRLALEISHLGFIS--QGNEFSYYMMIC 208 (394)
Q Consensus 172 ~~~VLvpGCGl--GRLa~eLA~~Gf~v--~G~D~S~~ML~~ 208 (394)
..+|++.|.|+ |-++..|..+|+.| +|.|-+..-+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 45899999986 55689999999977 788888766543
No 401
>PRK08324 short chain dehydrogenase; Validated
Probab=62.36 E-value=45 Score=36.86 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~ML 206 (394)
.+..||+.|+ |.|+ ++..|+++|+.|..++.+..-+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 4678999996 5555 3667788899999999987654
No 402
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.17 E-value=6.5 Score=38.93 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 175 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 175 VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
|+++|+|.+.+ |+.|++.|++|+-+|-+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 89999999988 677899999999888764
No 403
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.86 E-value=15 Score=39.28 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCcccChhHHhhchH--HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---cC---CeEEEE
Q 016155 128 DKVRCIIRNIVRDWAAEGKTERDQCYK--PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---LG---FISQGN 199 (394)
Q Consensus 128 ~kv~~~L~q~~RDWS~eg~~ER~~~y~--pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~---~G---f~v~G~ 199 (394)
+.+-.+-..+.|.|..+...+=-+.|- .++..+-+.+... ...+|+||.||+|++-...++ +- -..+|.
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGq 220 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPE---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ 220 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCC---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEE
Confidence 334444455556665543333112222 2555666655432 445999999999988444332 21 346899
Q ss_pred eCCHHHHHHHh
Q 016155 200 EFSYYMMICSS 210 (394)
Q Consensus 200 D~S~~ML~~s~ 210 (394)
|....++..++
T Consensus 221 E~~~~t~~l~~ 231 (489)
T COG0286 221 EINDTTYRLAK 231 (489)
T ss_pred eCCHHHHHHHH
Confidence 98888775544
No 404
>PRK08163 salicylate hydroxylase; Provisional
Probab=61.83 E-value=8.1 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.0
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+.+|+++|+|.+.| |..|++.|+.|+-+|-+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 46899999999998 566788899999998654
No 405
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=61.68 E-value=7.9 Score=37.26 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=26.9
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.|+++|+|.-.+ |++|+++|++|+-+|-..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 389999999887 899999999999999874
No 406
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=61.59 E-value=7.6 Score=43.18 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 170 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
++..+||++|+|.|.| |..|+++|++|+-+|-.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3678999999999999 56678889999998853
No 407
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=61.22 E-value=47 Score=29.88 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred eEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC
Q 016155 195 ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP 274 (394)
Q Consensus 195 ~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~ 274 (394)
+|.|.|+=...|...+-.|....- .+++.++..+-..+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--------------------------------------~~~v~li~~sHe~l~~~- 41 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--------------------------------------EDRVTLILDSHENLDEY- 41 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---------------------------------------GSGEEEEES-GGGGGGT-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--------------------------------------CCcEEEEECCHHHHHhh-
Confidence 488999999888766655542210 11245555544433211
Q ss_pred CCCCCccEEEEec-cc--------CChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccc-CCHHHHHHH
Q 016155 275 SQVGAWDAVVTCF-FI--------DTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRV 344 (394)
Q Consensus 275 ~~~~~fD~VvT~f-Fl--------Dta~ni~~yl~~I~~~LKpGG~wIN~GPLlyh~~~~~g~~~~~~ie-LS~eEl~~l 344 (394)
-..+..|+|+-++ || ..++.-+..++.+.++|+|||+.+- ..|.-.. ....| -..++..+-
T Consensus 42 i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~i---v~Y~GH~------gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 42 IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITI---VVYPGHP------GGKEESEAVEEFLAS 112 (140)
T ss_dssp --S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEE---EE--STC------HHHHHHHHHHHHHHT
T ss_pred CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEE---EEeCCCC------CCHHHHHHHHHHHHh
Confidence 0114788877554 44 2344566789999999999999986 3453111 00111 123334444
Q ss_pred HHhCCCEEEEEe
Q 016155 345 ALHYGFEFEKEK 356 (394)
Q Consensus 345 l~~~GF~ii~e~ 356 (394)
|...-|.+.+-+
T Consensus 113 L~~~~~~V~~~~ 124 (140)
T PF06962_consen 113 LDQKEFNVLKYQ 124 (140)
T ss_dssp S-TTTEEEEEEE
T ss_pred CCcceEEEEEEE
Confidence 445678887755
No 408
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=61.07 E-value=8.1 Score=36.41 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.||++|+|.+.+ |..|++.|.+|.-+|-..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 489999999988 777899999999999654
No 409
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.80 E-value=38 Score=33.16 Aligned_cols=34 Identities=26% Similarity=0.122 Sum_probs=24.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
+.+|+|+.+-. . ...+..+.++|+++|++|.+|.
T Consensus 230 ~~vd~vld~~g--~----~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 230 TGVDVVLEMSG--N----PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCCEEEECCC--C----HHHHHHHHHHhccCCEEEEEcc
Confidence 46898876432 1 1346777889999999998764
No 410
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=60.79 E-value=7.9 Score=41.47 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=25.4
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEe
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNE 200 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D 200 (394)
.||.+.|+|+-.| |++||++||+||-.|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~e 30 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYE 30 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEe
Confidence 3799999999999 789999999998776
No 411
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=60.42 E-value=20 Score=34.34 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=26.6
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ ++|..+..+|+. |..+....-+....
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~ 177 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGV 177 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 5678999875 488888888766 88887775555443
No 412
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=60.10 E-value=7.4 Score=40.89 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.|+++|+|.|.| |..||+.|++|+-+|-+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~ 32 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERY 32 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECC
Confidence 389999999999 56679999999988864
No 413
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.10 E-value=55 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~ 203 (394)
...+|+++|+|. |.+|..|++.|++|+.+.-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 446899999995 557999999999999777664
No 414
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=60.05 E-value=35 Score=34.46 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCeEEEecCCC-ChhHHHHHHc-C-CeEEEEeCCHHHHHHHhh
Q 016155 172 PPACLVPGAGL-GRLALEISHL-G-FISQGNEFSYYMMICSSF 211 (394)
Q Consensus 172 ~~~VLvpGCGl-GRLa~eLA~~-G-f~v~G~D~S~~ML~~s~f 211 (394)
+.+||+.|||. |-++..+|+. | ..|..+|.+..=|..|+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34899999996 6666777666 5 578899999998876653
No 415
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=59.95 E-value=34 Score=34.52 Aligned_cols=35 Identities=14% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
..+|+|+.+.. +....+..+.++|+++|++|.+|.
T Consensus 274 ~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEECC
Confidence 45899976533 112457788899999999999874
No 416
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=59.91 E-value=8 Score=39.07 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=28.0
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ 204 (394)
....|+++|+|.+.+ |..|++.|++|+-+|-...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 346899999999988 5668899999999986543
No 417
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=59.86 E-value=8.4 Score=29.71 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.4
Q ss_pred EecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 177 VPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 177 vpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
++|+|.+.| |+.|++.|++|+-.|-+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 579999988 788999999999988765
No 418
>PLN02827 Alcohol dehydrogenase-like
Probab=59.09 E-value=41 Score=34.03 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=27.1
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMIC 208 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~-~Gf-~v~G~D~S~~ML~~ 208 (394)
++.+||+.|+| .|.++..+|+ +|. .|.+++.+..-+..
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~ 233 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEK 233 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 67899999874 4555666665 488 48899988766543
No 419
>PRK06753 hypothetical protein; Provisional
Probab=58.28 E-value=9.1 Score=38.07 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=25.3
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+||++|+|.+.| |..|+++|++|+-+|-..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999988 556889999999988543
No 420
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.23 E-value=46 Score=29.55 Aligned_cols=100 Identities=21% Similarity=0.185 Sum_probs=57.5
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 251 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p 251 (394)
+|.++|+|.+.. |..|+.+|++|+--..+..-+.. ++... .. ...+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~----i~~~~---~n--------------------~~~~~~~~- 52 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEE----INETR---QN--------------------PKYLPGIK- 52 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHH----HHHHT---SE--------------------TTTSTTSB-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHH----HHHhC---CC--------------------CCCCCCcc-
Confidence 688999999876 67889999999998888755421 11111 00 11122211
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 252 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 252 ~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
...++.+. -|+.+.. ..-|+|+-+ -.+.-+.++++.|...|++|=.+|++
T Consensus 53 ----l~~~i~~t-~dl~~a~------~~ad~Iiia---vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 53 ----LPENIKAT-TDLEEAL------EDADIIIIA---VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ----EETTEEEE-SSHHHHH------TT-SEEEE----S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ----cCcccccc-cCHHHHh------CcccEEEec---ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 11224332 3544432 234666532 12233668899999999999888874
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.16 E-value=72 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEecCCCC--hhHHHHHHcCCeEEEEeCCHHHH
Q 016155 174 ACLVPGAGLG--RLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGlG--RLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
+|-++|+|.= .+|..|++.|+.|++.|.+..-+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v 36 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKV 36 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 5888999853 44778889999999999988654
No 422
>PRK07538 hypothetical protein; Provisional
Probab=57.78 E-value=9.2 Score=38.98 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=25.3
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+|+++|+|.+.| |..|+++|+.|+-+|-+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 699999999998 455788899999998654
No 423
>PRK09126 hypothetical protein; Provisional
Probab=57.63 E-value=8.6 Score=38.52 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=26.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
..|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4699999999998 566788999999998643
No 424
>PRK07588 hypothetical protein; Provisional
Probab=57.31 E-value=9.6 Score=38.37 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
+|+++|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERA 32 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCC
Confidence 699999999988 66779999999999843
No 425
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.22 E-value=30 Score=35.52 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=33.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHc--CC-eEEEEeCCHHHHHHHhh
Q 016155 170 ESPPACLVPGAGLGRLALEISHL--GF-ISQGNEFSYYMMICSSF 211 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRLa~eLA~~--Gf-~v~G~D~S~~ML~~s~f 211 (394)
..+.+||+.|+|.=.|..-|+.+ |. +|...|++..-|..|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 36789999999987776666665 43 79999999999987774
No 426
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=56.98 E-value=10 Score=39.78 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ 204 (394)
..+|+++|.|.|.| |..|+++|++|...|.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 45899999999999 5566888999999997653
No 427
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=56.93 E-value=27 Score=33.98 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHhhhhhc
Q 016155 171 SPPACLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSSFILNH 215 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~~G----f~v~G~D~S~~ML~~s~filn~ 215 (394)
.+.++-||.||.|.|.--|.-+- -.|.|-|++..||..|+.-|+-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 57789999999999977766552 3688999999999888876653
No 428
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=56.69 E-value=10 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=26.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.+|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4799999999998 566699999999998655
No 429
>PRK05868 hypothetical protein; Validated
Probab=56.35 E-value=10 Score=38.41 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+||+.|+|.+.+ |..|+++|+.|+-+|-+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3799999999987 55678899999888844
No 430
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.06 E-value=45 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG--lGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+| +|.++..+|+. |..|....-+..-.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~ 203 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKL 203 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 56799998874 88888888766 88998888776544
No 431
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=55.80 E-value=19 Score=33.00 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.8
Q ss_pred eEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHh
Q 016155 174 ACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSS 210 (394)
Q Consensus 174 ~VLvpGCGl-G-RLa~eLA~~Gf~v~G~D~S~~ML~~s~ 210 (394)
+|-++|+|+ | .+|..+|..|+.|+-.|.+...+..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence 588999986 3 568888999999999999999985544
No 432
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=55.67 E-value=43 Score=32.73 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=26.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML~ 207 (394)
.+.+||+.|+| +|..+..+|+. |..|.+++-+..-+.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~ 201 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKAD 201 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 56799999863 45555556554 999999888876553
No 433
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.06 E-value=14 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCChhHH----HHHHcCCeEEEEeCCHH
Q 016155 171 SPPACLVPGAGLGRLAL----EISHLGFISQGNEFSYY 204 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~----eLA~~Gf~v~G~D~S~~ 204 (394)
..+.||+-||-.|.+++ |+++.||.|.+.--+.+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 56789999999998655 55667999988765543
No 434
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.96 E-value=15 Score=39.43 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 170 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
..+.+|+++|+|...| |..|+++|+.|+.+|-.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3678999999998877 56678889999999843
No 435
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=54.94 E-value=13 Score=35.15 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCC-eEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGRL-ALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRL-a~eLA~~Gf-~v~G~D~S~ 203 (394)
.+.+||++||| +|.. +..||+.|. .++-+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999998 4544 788899997 577887664
No 436
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=54.93 E-value=16 Score=35.12 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=33.6
Q ss_pred HHHHHHhhC-CCCCCCCCCeEEEecCCCChhHHHHHHc--C--------CeEEEEeCCHHHHHHHh
Q 016155 156 ILEELDALF-PNRSKESPPACLVPGAGLGRLALEISHL--G--------FISQGNEFSYYMMICSS 210 (394)
Q Consensus 156 Il~~L~~~~-p~~~~~~~~~VLvpGCGlGRLa~eLA~~--G--------f~v~G~D~S~~ML~~s~ 210 (394)
+++.+++.- |. .+.+|+++|+|.|+|+..+.+. - -...-+|.|..|...-+
T Consensus 6 ~~~~~~~~~~p~----~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 6 IAQMWEQLGRPS----EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp HHHHHHHCT--S----S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred HHHHHHHcCCCC----cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 555555542 21 3579999999999999998654 1 36789999998864433
No 437
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=54.92 E-value=10 Score=38.23 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=25.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+|+++|.|.+.+ |..|+++|++|+-+|-.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 3699999999998 45568889999999954
No 438
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=54.90 E-value=39 Score=34.05 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=28.5
Q ss_pred CCeEEEecCCCChhHHHH-H-HcCCeEEEEeCCHHHHHHHhhhhh
Q 016155 172 PPACLVPGAGLGRLALEI-S-HLGFISQGNEFSYYMMICSSFILN 214 (394)
Q Consensus 172 ~~~VLvpGCGlGRLa~eL-A-~~Gf~v~G~D~S~~ML~~s~filn 214 (394)
..++||+|+|..-+=-.| + ..|+...|.|++..-|..|+-+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 689999999998662233 2 239999999999999988886654
No 439
>PRK06847 hypothetical protein; Provisional
Probab=54.70 E-value=13 Score=37.05 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
..+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 46899999999998 566788899999998553
No 440
>PRK07045 putative monooxygenase; Reviewed
Probab=54.68 E-value=11 Score=37.88 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
...+|+++|+|.+.| |..|+++|++|+-+|-..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 345899999999988 566788899999998544
No 441
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=54.50 E-value=27 Score=32.24 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=23.3
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
+|-+.|.|.=.| |..||+.|+.|+|+|....-+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~ 37 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVE 37 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHH
Confidence 577787775443 6778999999999999998653
No 442
>PLN02688 pyrroline-5-carboxylate reductase
Probab=54.39 E-value=85 Score=29.91 Aligned_cols=34 Identities=6% Similarity=0.252 Sum_probs=24.7
Q ss_pred CccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 279 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 279 ~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.-|+|+.|. ....+.+.++.+...++||.++|.+
T Consensus 61 ~aDvVil~v---~~~~~~~vl~~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 61 SSDVIILAV---KPQVVKDVLTELRPLLSKDKLLVSV 94 (266)
T ss_pred cCCEEEEEE---CcHHHHHHHHHHHhhcCCCCEEEEe
Confidence 358888776 3455777788887778888888853
No 443
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.89 E-value=11 Score=38.14 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=25.9
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 699999999988 667788999999998653
No 444
>PLN02712 arogenate dehydrogenase
Probab=53.78 E-value=52 Score=36.64 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=26.5
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGl--GRLa~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|.++|+|. |.++..|.+.|+.|.+.|-+.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 457999999776 556777777899999999885
No 445
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.74 E-value=19 Score=33.21 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 016155 171 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGC--GlGR-La~eLA~~Gf~v~G~D~S~~M 205 (394)
++.+||+.|+ |+|+ ++..|+++|++|.+.+-+..-
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3568999997 5666 577788889999999988744
No 446
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=53.59 E-value=14 Score=31.98 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=23.2
Q ss_pred eEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 016155 174 ACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCG-lGR-La~eLA~~Gf-~v~G~D~S~ 203 (394)
+||++||| +|. ++..|++.|. .++-+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999998 565 4777888898 588888653
No 447
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=53.57 E-value=19 Score=33.74 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=26.5
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCC
Q 016155 171 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCG-lGR-La~eLA~~Gf-~v~G~D~S 202 (394)
...+|+++||| +|. .+..||+.|+ .++-+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45689999998 444 5888899999 69999998
No 448
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.51 E-value=12 Score=38.15 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.6
Q ss_pred eEEEecCCCChhH--HHHHHcC-CeEEEEeCCH
Q 016155 174 ACLVPGAGLGRLA--LEISHLG-FISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRLa--~eLA~~G-f~v~G~D~S~ 203 (394)
+|+++|+|.|.|+ ..|+++| +.|+-+|-+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 7999999999885 5556778 5898888543
No 449
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=53.38 E-value=17 Score=35.04 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCC-eEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGRL-ALEISHLGF-ISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRL-a~eLA~~Gf-~v~G~D~S~ 203 (394)
...+||++||| +|.. +..||..|. ..+-+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999997 5654 777888897 577777653
No 450
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=53.38 E-value=78 Score=30.52 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=30.6
Q ss_pred HhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEE--eCCHHHH
Q 016155 161 DALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGN--EFSYYMM 206 (394)
Q Consensus 161 ~~~~p~~~~~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~--D~S~~ML 206 (394)
.+.||-.-.-++.+||++|.|.=-+ +.-|.+.|..|+-+ +++..+.
T Consensus 14 ~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~ 63 (223)
T PRK05562 14 NKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL 63 (223)
T ss_pred CCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH
Confidence 4445522122577999999997654 45566779887755 8888765
No 451
>PRK06126 hypothetical protein; Provisional
Probab=53.33 E-value=12 Score=39.68 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~ 201 (394)
....||++|+|.+.| |..|+++|++|+-+|-
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 346799999999998 6678999999999983
No 452
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=53.16 E-value=13 Score=37.70 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=26.4
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.+|+++|+|.+.| |..|++.|+.|+-+|-..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4799999999988 566789999999999664
No 453
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.86 E-value=53 Score=31.18 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=25.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
..+|+|+.+.-- ...+....++|+++|.++++|..
T Consensus 197 ~~vd~vld~~g~------~~~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 197 AGADVVIEAVGH------QWPLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEccC
Confidence 458988765211 23577788999999999998743
No 454
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=52.84 E-value=13 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
....||++|+|.+.+ |+.|+++|++|+-+|-.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 345799999999988 56689999999999964
No 455
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=52.73 E-value=14 Score=33.80 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.7
Q ss_pred eEEEecCC-CCh-hHHHHHHcCCe-EEEEeCCH
Q 016155 174 ACLVPGAG-LGR-LALEISHLGFI-SQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCG-lGR-La~eLA~~Gf~-v~G~D~S~ 203 (394)
+||++||| +|. .+..||+.|+. ++-+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 59999999 566 47888999985 88898876
No 456
>PRK12831 putative oxidoreductase; Provisional
Probab=52.66 E-value=15 Score=38.63 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+.+|+++|+|.+.| |+.|+++|++|+-+|-.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 678999999998877 78899999999999853
No 457
>PRK07208 hypothetical protein; Provisional
Probab=52.65 E-value=13 Score=38.60 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
..+|+++|+|...| |+.|+++|++|+-+|-+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~ 36 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD 36 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45799999999999 67899999999888754
No 458
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.42 E-value=14 Score=40.53 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+.+|+++|+|...| |..|+++|+.|+-+|-.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 467999999999998 68889999999999864
No 459
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.40 E-value=48 Score=34.99 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=27.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMI 207 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ML~ 207 (394)
.+|=+.|=|-=.| |..+|++||+|.|+|+...-+-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd 46 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVD 46 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHH
Confidence 5777877665444 7788999999999999998774
No 460
>PRK08013 oxidoreductase; Provisional
Probab=52.29 E-value=13 Score=37.77 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.4
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
..|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 4699999999988 566899999999999654
No 461
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=52.17 E-value=13 Score=37.60 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
+|+++|+|...+ |++||+.|.+|+-+|-.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 799999995444 78999999999988843
No 462
>PRK06184 hypothetical protein; Provisional
Probab=51.97 E-value=14 Score=38.87 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
..||++|+|...| |..|++.|+.|+-+|-.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~ 35 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKA 35 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5799999999988 66689999999999854
No 463
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=51.76 E-value=18 Score=40.46 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 016155 170 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEF 201 (394)
Q Consensus 170 ~~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~ 201 (394)
..+.+|+++|+|.+.| |+.|+++|+.|+-+|-
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~ 462 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA 462 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 3577999999999988 6788999999999985
No 464
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=51.59 E-value=50 Score=31.74 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|. ++|..+..+|+. |..|.+++-+..-.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~ 183 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKC 183 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678999884 688888777765 88998888776544
No 465
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=51.56 E-value=57 Score=30.71 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+-|+ |+|..+..+|+ +|+.|....-+....
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~ 177 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKC 177 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678998884 67888777765 499998888777654
No 466
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=51.44 E-value=54 Score=33.69 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHHHHhhhhhccccccccccccccccccCCCCcccCccccccCC
Q 016155 171 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 248 (394)
Q Consensus 171 ~~~~VLvpGCGl-GRLa~eLA-~~Gf~v~G~D~S~~ML~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPD 248 (394)
.+.+|.++|-|. |..+.-+| .+|.+|+-.|+|..=|--...+.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------------------------------- 212 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------------------------------- 212 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----------------------------------
Confidence 467889999886 55666654 458999999999877632222211
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 016155 249 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 315 (394)
Q Consensus 249 v~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~ 315 (394)
.++....-.+..+. ..-.+.|+|+..-.|.-+...+-..+++-+.+|||.+.|.+
T Consensus 213 ---------~rv~~~~st~~~ie---e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 213 ---------GRVHTLYSTPSNIE---EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ---------ceeEEEEcCHHHHH---HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 01111221222211 12356899999999988888888899999999999999953
No 467
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=51.38 E-value=82 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 016155 278 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 317 (394)
Q Consensus 278 ~~fD~VvT~fFlDta~ni~~yl~~I~~~LKpGG~wIN~GP 317 (394)
+.+|+|+.+ ... ...++.+.++|++||.++.+|.
T Consensus 224 ~~vD~vi~~---~~~---~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 224 EPLDAAIIF---APV---GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcccEEEEc---CCc---HHHHHHHHHHhhcCCEEEEEcC
Confidence 347877542 111 2568899999999999998774
No 468
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=51.22 E-value=13 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=25.8
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 173 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 173 ~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
..|+++|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4699999999988 56678899999999963
No 469
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=50.93 E-value=40 Score=32.51 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ ++|..+..+|++ |..|.++.-+....
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~ 177 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKA 177 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHH
Confidence 5678999884 688888888766 88888888776554
No 470
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=50.78 E-value=12 Score=37.16 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.5
Q ss_pred EEEecCCCChh--HHHHHHcC-CeEEEEeCCHH
Q 016155 175 CLVPGAGLGRL--ALEISHLG-FISQGNEFSYY 204 (394)
Q Consensus 175 VLvpGCGlGRL--a~eLA~~G-f~v~G~D~S~~ 204 (394)
|+++|+|.+.+ |..|++.| ++|+-+|-...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 89999999988 55688999 99999987643
No 471
>PRK06849 hypothetical protein; Provisional
Probab=50.71 E-value=21 Score=36.29 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlG---RLa~eLA~~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|++.+ .++..|.+.|+.|.++|....-+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 4679999999997 57899999999999999886443
No 472
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=50.64 E-value=53 Score=30.73 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ |+|..+..+++ +|..|...+-+...+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~ 177 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKL 177 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 5679999985 57777666654 489988888776655
No 473
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=50.32 E-value=47 Score=31.72 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=26.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYM 205 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~M 205 (394)
++.+||+.|+ +.|.++..+|+. |..+.+..-+..-
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~ 175 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQ 175 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHH
Confidence 5679999876 488888888766 8888776665544
No 474
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.28 E-value=17 Score=37.95 Aligned_cols=32 Identities=28% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+.+|+++|+|.+.| |..|+++|++|+-+|-.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 567999999998877 78889999999999965
No 475
>PLN02487 zeta-carotene desaturase
Probab=50.04 E-value=26 Score=38.27 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.0
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+.+|+++|.|.+.| |+.|+++|+.|+-+|-..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 45999999999998 678899999999888543
No 476
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=49.92 E-value=19 Score=37.67 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.6
Q ss_pred CCCeEEEecCC-CChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAG-LGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+..+|+++|-| +|.- |..|+++|+.|+|.|...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 45689999876 5554 678999999999999754
No 477
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.66 E-value=35 Score=36.70 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.6
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGl-GR-La~eLA~~Gf~v~G~D~S 202 (394)
.+.+|.++|.|. |+ +|..|...|..|.+.|-+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 567899999874 44 455556668999998864
No 478
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=49.59 E-value=1.1e+02 Score=30.06 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCGlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
+..+||.+|+|+|=-+.-.|. .|..|.--|+...+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence 467899999999933444455 367787777777665
No 479
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=49.53 E-value=62 Score=31.22 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.8
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpG--CGlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.| .++|.++..+|+. |.+|.+++-+..-.
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~ 178 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKA 178 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 567899875 4688888888765 99999988877655
No 480
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=49.50 E-value=16 Score=37.10 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.9
Q ss_pred eEEEecCCCChh--HHHHHHcC--CeEEEEeC
Q 016155 174 ACLVPGAGLGRL--ALEISHLG--FISQGNEF 201 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~G--f~v~G~D~ 201 (394)
+|+++|.|...| |+.|++.| ++|+-.|-
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa 33 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEA 33 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 699999999999 67899988 88887764
No 481
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=49.24 E-value=30 Score=28.18 Aligned_cols=31 Identities=39% Similarity=0.476 Sum_probs=18.1
Q ss_pred CCCeEEEecCCCCh-hHHHHHHc---CCeEEEEeC
Q 016155 171 SPPACLVPGAGLGR-LALEISHL---GFISQGNEF 201 (394)
Q Consensus 171 ~~~~VLvpGCGlGR-La~eLA~~---Gf~v~G~D~ 201 (394)
.+++||++||-+|. ||-.++.. |.++.|+-|
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 56799999999995 55555444 455556544
No 482
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=49.20 E-value=1e+02 Score=32.75 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=29.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHH
Q 016155 169 KESPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMM 206 (394)
Q Consensus 169 ~~~~~~VLvpGCGlGRLa~eLA~~--G-f~v~G~D~S~~ML 206 (394)
.+++.||||..|--|.=+..+|.+ + =.+.|||.+..=+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~ 279 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL 279 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH
Confidence 468899999999999888888766 1 2578999887665
No 483
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.15 E-value=16 Score=42.25 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
.+.+|+++|+|-..| |+.|+++||.|+-.|-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 578999999999999 68899999999998843
No 484
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=48.98 E-value=15 Score=37.33 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=25.3
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 016155 175 CLVPGAGLGRL--ALEISHLGFISQGNEFSYY 204 (394)
Q Consensus 175 VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~~ 204 (394)
|||+|+|...| |.++|++|.+|..+|-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 89999999998 7888999999999998765
No 485
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=48.95 E-value=20 Score=39.49 Aligned_cols=33 Identities=21% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|+++|+|...| |..|+++|+.|+.+|-+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 567999999999998 688899999999998654
No 486
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=48.85 E-value=75 Score=31.72 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=25.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+| +|.++..+|+. |..|.+++-+...+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~ 217 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR 217 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 56789988764 56666777665 88888888776544
No 487
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=48.77 E-value=16 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.2
Q ss_pred CCeEEEecCCCChh--HHHHHHc---CCeEEEEeC
Q 016155 172 PPACLVPGAGLGRL--ALEISHL---GFISQGNEF 201 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~---Gf~v~G~D~ 201 (394)
...||++|+|.+.+ |+.|+++ |+.|+.+|-
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 34799999999988 5666777 999999997
No 488
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=48.69 E-value=16 Score=42.49 Aligned_cols=33 Identities=24% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|+++|.|.+.| |+.|+++|+.|+-+|-..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 467999999999988 788999999999998653
No 489
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=48.58 E-value=16 Score=36.69 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=26.4
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
...|+++|+|.+.+ |..|++.|++|+-+|-.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 45799999999987 56688999999999965
No 490
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.52 E-value=17 Score=39.87 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 171 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 171 ~~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
.+.+|+++|+|...| |+.|+++|+.|+-+|-..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 478999999999988 678899999999998654
No 491
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=48.36 E-value=18 Score=32.15 Aligned_cols=30 Identities=30% Similarity=0.233 Sum_probs=26.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
+|+++|+|.+.+ |.+|++.|++++-+|-+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 589999999998 778899999999997543
No 492
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=48.10 E-value=23 Score=34.73 Aligned_cols=31 Identities=23% Similarity=0.103 Sum_probs=27.1
Q ss_pred CeEEEecCCCC-hhHHHHHHcC--CeEEEEeCCH
Q 016155 173 PACLVPGAGLG-RLALEISHLG--FISQGNEFSY 203 (394)
Q Consensus 173 ~~VLvpGCGlG-RLa~eLA~~G--f~v~G~D~S~ 203 (394)
.+||+.|+|.+ .++..|.+.| +.|.+.|.+.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCC
Confidence 48999999999 6889999994 9999999875
No 493
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=47.36 E-value=85 Score=29.96 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=26.9
Q ss_pred CCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 016155 172 PPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 206 (394)
Q Consensus 172 ~~~VLvpGC--GlGRLa~eLA~~-Gf~v~G~D~S~~ML 206 (394)
+.+||+.|+ ++|.++..+|+. |..|...+-+..-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~ 184 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQA 184 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 358999885 678887777765 88888888887654
No 494
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=47.29 E-value=84 Score=31.08 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=24.9
Q ss_pred eEEEecCCC-Ch-hHHHHHHcC--CeEEEEeCCHHHH
Q 016155 174 ACLVPGAGL-GR-LALEISHLG--FISQGNEFSYYMM 206 (394)
Q Consensus 174 ~VLvpGCGl-GR-La~eLA~~G--f~v~G~D~S~~ML 206 (394)
+|.++|||. |+ +++.|+.+| .++..+|.....+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~ 38 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKA 38 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchh
Confidence 799999986 44 366678888 5799999876554
No 495
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=47.28 E-value=18 Score=34.32 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=24.8
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 016155 174 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 202 (394)
Q Consensus 174 ~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S 202 (394)
+|+++|+|.+.| |..|+++|++|+-+|-.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence 599999999998 56778899999988853
No 496
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=47.28 E-value=75 Score=31.70 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 016155 171 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 207 (394)
Q Consensus 171 ~~~~VLvpGCG-lGRLa~eLA~~-Gf~-v~G~D~S~~ML~ 207 (394)
++.+||+.|+| +|.++..+|+. |.. |.+.+-+..-+.
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~ 222 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFE 222 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 56789998763 45566666654 875 788887766553
No 497
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.67 E-value=70 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.1
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 016155 171 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 206 (394)
Q Consensus 171 ~~~~VLvpGC--GlGRLa~eLA~-~Gf~v~G~D~S~~ML 206 (394)
++.+||+.|+ |+|+.+..+++ +|..+...+.+...+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~ 182 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKR 182 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 5678999986 56777655544 489998888876554
No 498
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.65 E-value=77 Score=33.36 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHhhcCccc-ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHH---
Q 016155 133 IIRNIVRDWAAE-GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMM--- 206 (394)
Q Consensus 133 ~L~q~~RDWS~e-g~~ER~~~y~pIl~~L~~~~p~~~~~~~~~VLvpGCGlGRLa~eLA~~Gf--~v~G~D~S~~ML--- 206 (394)
.|+|-++-.|.+ ..++-......|+++|+-. +..--.|||+|.|.++..+|..+- ...|+|++..--
T Consensus 160 ~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g-------~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a 232 (419)
T KOG3924|consen 160 ILNQHYKSFSSETYGETQLEQLRSIVDELKLG-------PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCA 232 (419)
T ss_pred HHHHhhccccccchhhhhHHHHHHHHHHhccC-------CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHH
Confidence 455555555543 1122222223455555421 445678999999999999988864 346777654332
Q ss_pred -HHHhhhhhccccccccccccccccccCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE
Q 016155 207 -ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 285 (394)
Q Consensus 207 -~~s~filn~~~~~~~~~i~Pfi~~~sn~~~~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDf~ely~~~~~~~~fD~VvT 285 (394)
....+..+... . |. .....+..+.|+|++--....-...-++|+.
T Consensus 233 ~~~~~~~kk~~k------~------fG----------------------k~~~~~~~i~gsf~~~~~v~eI~~eatvi~v 278 (419)
T KOG3924|consen 233 ELNKEEFKKLMK------H------FG----------------------KKPNKIETIHGSFLDPKRVTEIQTEATVIFV 278 (419)
T ss_pred HHHHHHHHHHHH------H------hC----------------------CCcCceeecccccCCHHHHHHHhhcceEEEE
Confidence 11111111100 0 00 0012367788888753210001233455554
Q ss_pred ecc-cCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 016155 286 CFF-IDTAHNIVEYIEIISRILKDGGVWINLGPL 318 (394)
Q Consensus 286 ~fF-lDta~ni~~yl~~I~~~LKpGG~wIN~GPL 318 (394)
.-| .|.. +..=+++|..-+|+|=+.|-.-||
T Consensus 279 NN~~Fdp~--L~lr~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 279 NNVAFDPE--LKLRSKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred ecccCCHH--HHHhhHHHHhhCCCcceEeccccc
Confidence 433 3432 334466899999999999965444
No 499
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=46.59 E-value=26 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=27.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 016155 172 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 203 (394)
Q Consensus 172 ~~~VLvpGCGlGRL--a~eLA~~Gf~v~G~D~S~ 203 (394)
...||++|+|...+ |+.||+.|++|.-+|-..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34699999999999 778899999999998643
No 500
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=46.42 E-value=18 Score=35.96 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=22.9
Q ss_pred eEEEecCCC-Chh-HHHHHHcCCeEEEEeC
Q 016155 174 ACLVPGAGL-GRL-ALEISHLGFISQGNEF 201 (394)
Q Consensus 174 ~VLvpGCGl-GRL-a~eLA~~Gf~v~G~D~ 201 (394)
.|+++|.|. |-- |++|+++|.+|+-+|-
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 489999994 433 8899999999988875
Done!