Query 016156
Match_columns 394
No_of_seqs 168 out of 1272
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00191 enolase 100.0 4.5E-84 9.7E-89 655.9 38.7 370 24-394 4-376 (457)
2 KOG2670 Enolase [Carbohydrate 100.0 1.6E-82 3.6E-87 595.2 27.9 350 44-394 1-354 (433)
3 PTZ00081 enolase; Provisional 100.0 1.8E-79 4E-84 620.1 37.5 351 44-394 2-364 (439)
4 COG0148 Eno Enolase [Carbohydr 100.0 5.3E-78 1.2E-82 581.5 33.0 335 45-394 3-343 (423)
5 cd03313 enolase Enolase: Enola 100.0 1.3E-74 2.7E-79 584.2 35.3 338 48-394 1-344 (408)
6 PRK00077 eno enolase; Provisio 100.0 5.8E-74 1.3E-78 582.2 35.6 337 44-394 2-344 (425)
7 PTZ00378 hypothetical protein; 100.0 6.1E-74 1.3E-78 576.2 34.2 348 26-394 28-412 (518)
8 TIGR01060 eno phosphopyruvate 100.0 1.3E-72 2.7E-77 572.4 33.7 338 46-394 1-345 (425)
9 PRK08350 hypothetical protein; 100.0 2.2E-55 4.8E-60 421.6 27.1 263 45-394 3-269 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 2.3E-48 4.9E-53 374.1 19.0 212 183-394 2-216 (295)
11 cd03327 MR_like_2 Mandelate ra 100.0 3.8E-41 8.2E-46 334.0 18.6 260 45-394 1-261 (341)
12 cd03328 MR_like_3 Mandelate ra 100.0 4.8E-40 1E-44 327.3 19.2 244 61-394 29-274 (352)
13 cd03321 mandelate_racemase Man 100.0 1.3E-38 2.9E-43 317.4 27.0 263 44-394 1-276 (355)
14 PRK15072 bifunctional D-altron 100.0 3.6E-39 7.8E-44 326.5 22.9 273 44-394 1-296 (404)
15 PRK15440 L-rhamnonate dehydrat 100.0 3.5E-38 7.5E-43 317.4 19.8 240 61-394 57-300 (394)
16 cd03322 rpsA The starvation se 100.0 6.5E-38 1.4E-42 313.1 21.3 252 45-394 1-253 (361)
17 PRK14017 galactonate dehydrata 100.0 2.1E-37 4.5E-42 311.7 21.5 266 44-394 1-267 (382)
18 COG4948 L-alanine-DL-glutamate 100.0 2.3E-37 4.9E-42 310.4 19.7 246 61-394 30-278 (372)
19 cd03325 D-galactonate_dehydrat 100.0 5.3E-37 1.1E-41 305.6 21.2 262 45-394 1-266 (352)
20 cd03324 rTSbeta_L-fuconate_deh 100.0 5E-37 1.1E-41 311.0 20.7 266 44-394 1-333 (415)
21 cd03326 MR_like_1 Mandelate ra 100.0 3.7E-37 8E-42 309.4 19.6 253 60-394 26-299 (385)
22 TIGR02534 mucon_cyclo muconate 100.0 5.9E-37 1.3E-41 307.0 21.1 249 60-394 27-277 (368)
23 cd03318 MLE Muconate Lactonizi 100.0 6.8E-37 1.5E-41 306.2 21.2 249 60-394 28-278 (365)
24 cd03329 MR_like_4 Mandelate ra 100.0 1.4E-36 3E-41 304.3 20.6 246 61-394 33-280 (368)
25 cd03314 MAL Methylaspartate am 100.0 1.3E-35 2.7E-40 295.3 22.7 267 60-394 12-300 (369)
26 cd03317 NAAAR N-acylamino acid 100.0 5.2E-36 1.1E-40 298.7 19.4 242 61-394 25-267 (354)
27 TIGR01928 menC_lowGC/arch o-su 100.0 1.8E-35 4E-40 291.4 19.3 241 60-394 21-262 (324)
28 TIGR03247 glucar-dehydr glucar 100.0 2.3E-35 5E-40 300.6 20.0 274 44-394 4-317 (441)
29 cd03316 MR_like Mandelate race 100.0 2.8E-35 6.1E-40 293.5 19.5 270 45-394 1-279 (357)
30 cd03323 D-glucarate_dehydratas 100.0 7.9E-35 1.7E-39 293.7 21.5 271 45-394 1-300 (395)
31 TIGR01502 B_methylAsp_ase meth 100.0 1.3E-33 2.7E-38 283.8 23.7 263 61-394 50-336 (408)
32 PF03952 Enolase_N: Enolase, N 100.0 8.7E-34 1.9E-38 242.7 14.6 130 45-174 1-132 (132)
33 cd03319 L-Ala-DL-Glu_epimerase 100.0 5E-33 1.1E-37 273.1 19.9 242 61-394 26-267 (316)
34 PRK15129 L-Ala-D/L-Glu epimera 100.0 1.5E-29 3.2E-34 249.1 18.8 230 60-394 27-256 (321)
35 cd03315 MLE_like Muconate lact 100.0 7.4E-29 1.6E-33 237.8 13.7 175 151-394 45-219 (265)
36 cd00308 enolase_like Enolase-s 99.9 2.7E-27 6E-32 222.2 15.4 141 151-394 44-184 (229)
37 cd03320 OSBS o-Succinylbenzoat 99.9 2.9E-27 6.2E-32 226.6 9.6 168 150-394 48-215 (263)
38 PRK02714 O-succinylbenzoate sy 99.9 1.9E-25 4.2E-30 219.8 15.5 224 60-394 28-256 (320)
39 TIGR01927 menC_gamma/gm+ o-suc 99.9 1.5E-25 3.2E-30 219.3 13.3 221 61-394 22-245 (307)
40 PLN02980 2-oxoglutarate decarb 99.9 5.7E-25 1.2E-29 254.6 19.1 259 44-394 931-1228(1655)
41 PRK05105 O-succinylbenzoate sy 99.9 1.8E-22 3.9E-27 198.9 12.3 216 60-394 27-246 (322)
42 PF02746 MR_MLE_N: Mandelate r 99.6 3.1E-15 6.7E-20 126.1 12.6 98 53-175 15-117 (117)
43 PRK02901 O-succinylbenzoate sy 99.6 6.9E-16 1.5E-20 152.1 9.3 105 258-394 118-223 (327)
44 PF01188 MR_MLE: Mandelate rac 99.3 1.6E-11 3.4E-16 93.3 9.4 67 263-360 1-67 (67)
45 COG3799 Mal Methylaspartate am 98.6 2E-06 4.4E-11 81.6 14.7 234 106-393 88-336 (410)
46 cd02932 OYE_YqiM_FMN Old yello 98.1 3.8E-05 8.2E-10 76.4 12.8 88 278-384 220-319 (336)
47 cd04733 OYE_like_2_FMN Old yel 97.8 0.00013 2.9E-09 72.6 11.3 88 278-384 215-321 (338)
48 PF07476 MAAL_C: Methylasparta 97.6 0.00049 1.1E-08 63.4 10.6 118 258-393 47-176 (248)
49 cd02803 OYE_like_FMN_family Ol 97.3 0.003 6.4E-08 62.4 12.7 88 278-384 207-310 (327)
50 cd02930 DCR_FMN 2,4-dienoyl-Co 97.2 0.001 2.2E-08 66.6 8.4 70 313-384 221-305 (353)
51 COG1441 MenC O-succinylbenzoat 97.1 0.0046 9.9E-08 57.4 10.7 214 60-392 27-243 (321)
52 PF05034 MAAL_N: Methylasparta 96.6 0.01 2.2E-07 51.8 7.8 102 61-175 51-154 (159)
53 cd02801 DUS_like_FMN Dihydrour 96.1 0.034 7.4E-07 51.8 9.1 66 317-384 139-212 (231)
54 cd04734 OYE_like_3_FMN Old yel 93.0 1.1 2.4E-05 44.7 11.4 70 313-384 225-314 (343)
55 cd04747 OYE_like_5_FMN Old yel 89.6 6.2 0.00013 39.8 12.8 71 313-384 232-327 (361)
56 cd04735 OYE_like_4_FMN Old yel 87.2 4 8.7E-05 40.9 9.7 68 313-383 232-311 (353)
57 PRK10605 N-ethylmaleimide redu 86.5 9 0.00019 38.6 11.7 69 313-384 245-320 (362)
58 PRK13523 NADPH dehydrogenase N 85.8 5.9 0.00013 39.5 9.9 70 313-384 224-304 (337)
59 cd02933 OYE_like_FMN Old yello 84.6 8.6 0.00019 38.3 10.5 68 314-384 239-313 (338)
60 cd02929 TMADH_HD_FMN Trimethyl 83.8 9.3 0.0002 38.6 10.4 39 345-384 280-318 (370)
61 PRK08255 salicylyl-CoA 5-hydro 81.9 59 0.0013 36.1 16.6 70 313-384 635-716 (765)
62 PRK10550 tRNA-dihydrouridine s 80.5 22 0.00048 35.0 11.4 66 317-384 149-223 (312)
63 PRK10415 tRNA-dihydrouridine s 80.1 19 0.0004 35.7 10.8 66 317-384 150-223 (321)
64 cd02931 ER_like_FMN Enoate red 78.3 26 0.00057 35.5 11.5 71 312-384 248-334 (382)
65 PF01207 Dus: Dihydrouridine s 76.9 6.5 0.00014 38.7 6.5 68 315-384 137-212 (309)
66 PF00724 Oxidored_FMN: NADH:fl 76.5 23 0.0005 35.2 10.4 40 344-384 281-320 (341)
67 TIGR01769 GGGP geranylgeranylg 74.4 22 0.00047 33.0 8.8 67 314-384 132-204 (205)
68 PF02197 RIIa: Regulatory subu 72.9 1.5 3.2E-05 29.3 0.5 16 27-42 17-32 (38)
69 COG1902 NemA NADH:flavin oxido 69.9 46 0.001 33.6 10.7 88 279-384 216-317 (363)
70 PRK07259 dihydroorotate dehydr 69.0 52 0.0011 31.9 10.7 42 341-384 221-262 (301)
71 PRK01033 imidazole glycerol ph 67.2 83 0.0018 29.9 11.5 47 336-384 178-225 (258)
72 cd04732 HisA HisA. Phosphorib 64.0 1E+02 0.0022 28.4 11.2 44 338-384 174-218 (234)
73 TIGR01037 pyrD_sub1_fam dihydr 63.9 55 0.0012 31.7 9.8 39 344-384 224-262 (300)
74 COG0821 gcpE 1-hydroxy-2-methy 62.3 11 0.00023 37.5 4.2 47 341-390 61-107 (361)
75 TIGR00736 nifR3_rel_arch TIM-b 61.6 85 0.0018 29.6 10.1 60 323-384 154-219 (231)
76 PRK00748 1-(5-phosphoribosyl)- 61.6 1.1E+02 0.0023 28.2 10.9 44 339-384 175-219 (233)
77 cd00956 Transaldolase_FSA Tran 61.2 77 0.0017 29.3 9.7 72 314-389 62-133 (211)
78 COG0106 HisA Phosphoribosylfor 60.9 93 0.002 29.6 10.1 104 264-386 111-223 (241)
79 cd02810 DHOD_DHPD_FMN Dihydroo 60.7 47 0.001 31.9 8.6 40 343-384 230-271 (289)
80 PRK11815 tRNA-dihydrouridine s 59.4 1.5E+02 0.0032 29.5 11.9 66 315-384 150-232 (333)
81 TIGR03572 WbuZ glycosyl amidat 59.4 1.3E+02 0.0027 27.9 11.0 43 340-384 183-226 (232)
82 TIGR00735 hisF imidazoleglycer 57.7 1.4E+02 0.0029 28.3 11.0 109 266-384 112-228 (254)
83 cd04723 HisA_HisF Phosphoribos 54.2 1.8E+02 0.0039 27.2 11.1 108 265-391 114-225 (233)
84 PRK14024 phosphoribosyl isomer 49.7 2.1E+02 0.0046 26.8 10.8 57 326-384 155-221 (241)
85 cd08209 RLP_DK-MTP-1-P-enolase 48.9 2.8E+02 0.0062 28.3 12.1 111 247-384 158-284 (391)
86 PLN02446 (5-phosphoribosyl)-5- 48.7 2.3E+02 0.005 27.3 10.9 104 264-377 122-229 (262)
87 PRK13587 1-(5-phosphoribosyl)- 48.3 2.4E+02 0.0051 26.5 11.1 99 264-383 112-219 (234)
88 cd02911 arch_FMN Archeal FMN-b 47.7 1.9E+02 0.0041 27.1 10.1 58 323-384 158-219 (233)
89 smart00394 RIIa RIIalpha, Regu 46.0 9.5 0.0002 25.2 0.7 17 26-42 16-32 (38)
90 COG0113 HemB Delta-aminolevuli 44.0 2.1E+02 0.0046 28.2 9.8 107 261-381 174-296 (330)
91 PRK00366 ispG 4-hydroxy-3-meth 43.5 36 0.00077 34.2 4.6 48 342-392 68-115 (360)
92 TIGR03332 salvage_mtnW 2,3-dik 43.0 3.6E+02 0.0078 27.7 11.9 110 248-384 174-299 (407)
93 PLN02617 imidazole glycerol ph 42.9 2.4E+02 0.0051 30.2 10.9 108 265-383 374-510 (538)
94 PRK13384 delta-aminolevulinic 42.5 1.8E+02 0.0038 28.9 9.0 106 261-380 171-291 (322)
95 cd00377 ICL_PEPM Members of th 38.9 2.5E+02 0.0054 26.5 9.5 43 314-360 158-202 (243)
96 COG0042 tRNA-dihydrouridine sy 37.5 69 0.0015 31.8 5.6 43 341-384 184-227 (323)
97 cd08208 RLP_Photo Ribulose bis 36.6 4.7E+02 0.01 27.1 11.5 109 249-384 196-317 (424)
98 COG0107 HisF Imidazoleglycerol 36.0 3E+02 0.0065 26.2 9.1 108 265-383 111-227 (256)
99 PRK07998 gatY putative fructos 35.2 1.3E+02 0.0029 29.2 7.1 64 313-380 153-225 (283)
100 PRK05718 keto-hydroxyglutarate 35.0 1.3E+02 0.0028 27.9 6.7 63 314-379 25-89 (212)
101 cd04731 HisF The cyclase subun 34.8 3.8E+02 0.0081 24.9 11.2 43 340-384 179-222 (243)
102 PF00490 ALAD: Delta-aminolevu 34.4 3.5E+02 0.0075 26.9 9.7 106 261-380 171-292 (324)
103 TIGR02129 hisA_euk phosphoribo 33.8 4.3E+02 0.0094 25.3 10.5 111 265-384 116-232 (253)
104 KOG2335 tRNA-dihydrouridine sy 33.2 4.9E+02 0.011 26.2 10.7 67 316-384 155-232 (358)
105 TIGR00612 ispG_gcpE 1-hydroxy- 33.2 54 0.0012 32.7 4.0 47 342-391 60-106 (346)
106 PRK00748 1-(5-phosphoribosyl)- 33.0 1.7E+02 0.0037 26.9 7.3 43 340-384 60-102 (233)
107 cd04738 DHOD_2_like Dihydrooro 32.0 1.7E+02 0.0036 28.9 7.4 40 343-384 267-308 (327)
108 cd04740 DHOD_1B_like Dihydroor 31.4 88 0.0019 30.2 5.2 44 339-384 216-259 (296)
109 TIGR00742 yjbN tRNA dihydrouri 30.5 5.4E+02 0.012 25.4 11.7 65 316-384 141-222 (318)
110 cd08211 RuBisCO_large_II Ribul 29.9 6.5E+02 0.014 26.2 12.4 111 247-382 190-319 (439)
111 TIGR01182 eda Entner-Doudoroff 29.9 1.8E+02 0.004 26.8 6.7 63 314-379 18-82 (204)
112 PF00977 His_biosynth: Histidi 29.7 2.8E+02 0.0061 25.8 8.1 101 265-383 110-219 (229)
113 PRK13585 1-(5-phosphoribosyl)- 29.1 4.6E+02 0.01 24.1 10.8 44 338-384 177-221 (241)
114 PF04551 GcpE: GcpE protein; 28.4 57 0.0012 32.8 3.3 44 342-389 57-105 (359)
115 CHL00040 rbcL ribulose-1,5-bis 28.3 6.8E+02 0.015 26.3 11.3 86 248-359 202-293 (475)
116 PRK02083 imidazole glycerol ph 28.1 5E+02 0.011 24.3 11.3 42 341-384 184-226 (253)
117 cd08207 RLP_NonPhot Ribulose b 27.9 6.8E+02 0.015 25.7 12.9 110 248-384 178-300 (406)
118 PF00701 DHDPS: Dihydrodipicol 27.7 2.7E+02 0.0058 26.7 7.9 27 259-287 52-78 (289)
119 TIGR03326 rubisco_III ribulose 27.6 6.9E+02 0.015 25.7 11.4 110 248-384 179-304 (412)
120 TIGR01304 IMP_DH_rel_2 IMP deh 27.5 2.4E+02 0.0052 28.6 7.6 41 340-383 174-214 (369)
121 PF13714 PEP_mutase: Phosphoen 27.4 4.8E+02 0.01 24.6 9.3 42 314-359 153-196 (238)
122 TIGR00737 nifR3_yhdG putative 27.3 1.1E+02 0.0025 29.9 5.3 43 341-384 179-221 (319)
123 PRK09549 mtnW 2,3-diketo-5-met 27.0 7.1E+02 0.015 25.6 12.1 110 248-384 169-294 (407)
124 cd06556 ICL_KPHMT Members of t 26.7 4.9E+02 0.011 24.6 9.2 41 314-359 154-196 (240)
125 cd04823 ALAD_PBGS_aspartate_ri 26.7 6.2E+02 0.013 25.1 10.0 108 260-381 165-288 (320)
126 PRK09283 delta-aminolevulinic 25.5 6.3E+02 0.014 25.1 9.8 106 261-380 169-290 (323)
127 TIGR00007 phosphoribosylformim 25.5 5.2E+02 0.011 23.6 11.8 101 265-384 109-217 (230)
128 PRK07107 inosine 5-monophospha 25.2 3.2E+02 0.0069 28.9 8.4 66 315-384 240-311 (502)
129 cd04732 HisA HisA. Phosphorib 24.7 1.8E+02 0.0038 26.7 5.8 11 365-375 107-117 (234)
130 cd00952 CHBPH_aldolase Trans-o 24.5 5.9E+02 0.013 24.8 9.7 110 259-376 59-183 (309)
131 cd00384 ALAD_PBGS Porphobilino 24.5 6.8E+02 0.015 24.8 9.8 106 261-380 161-282 (314)
132 cd04824 eu_ALAD_PBGS_cysteine_ 23.7 7.3E+02 0.016 24.6 10.1 107 261-380 165-288 (320)
133 PRK06015 keto-hydroxyglutarate 23.6 2.8E+02 0.006 25.6 6.7 63 314-379 14-78 (201)
134 PRK04128 1-(5-phosphoribosyl)- 23.2 6.1E+02 0.013 23.6 10.4 113 264-393 108-220 (228)
135 cd04731 HisF The cyclase subun 22.8 1.9E+02 0.0041 26.9 5.7 41 342-384 59-99 (243)
136 COG1105 FruK Fructose-1-phosph 22.7 3.1E+02 0.0068 27.1 7.2 82 297-388 101-186 (310)
137 cd07940 DRE_TIM_IPMS 2-isoprop 22.4 3.4E+02 0.0075 25.7 7.5 70 312-384 16-92 (268)
138 PTZ00409 Sir2 (Silent Informat 22.2 1.8E+02 0.0038 28.1 5.3 59 330-388 177-236 (271)
139 PRK04169 geranylgeranylglycery 21.7 6.7E+02 0.015 23.6 9.0 68 313-384 137-212 (232)
140 PRK08610 fructose-bisphosphate 21.4 3.1E+02 0.0067 26.8 6.9 63 314-380 157-229 (286)
141 COG0800 Eda 2-keto-3-deoxy-6-p 21.2 3.8E+02 0.0081 25.0 7.0 66 314-382 23-90 (211)
142 cd08212 RuBisCO_large_I Ribulo 21.2 9.5E+02 0.021 25.1 11.8 85 248-359 180-270 (450)
143 cd08213 RuBisCO_large_III Ribu 20.8 9.3E+02 0.02 24.8 12.1 85 248-359 166-256 (412)
144 PRK07709 fructose-bisphosphate 20.8 3.2E+02 0.007 26.6 6.8 65 313-384 156-232 (285)
145 cd02812 PcrB_like PcrB_like pr 20.3 6.7E+02 0.015 23.4 8.6 68 313-384 132-203 (219)
146 PF00735 Septin: Septin; Inte 20.3 43 0.00094 32.4 0.7 29 331-359 117-150 (281)
No 1
>PLN00191 enolase
Probab=100.00 E-value=4.5e-84 Score=655.91 Aligned_cols=370 Identities=70% Similarity=1.105 Sum_probs=346.4
Q ss_pred CCCCCcchhhhhHhhhcCCc--ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCccc
Q 016156 24 PRSYRPMRVQCSVASTASSS--AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYG 100 (394)
Q Consensus 24 ~~~~~p~d~~g~la~~f~~~--~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~ 100 (394)
.+..+|.|+|||||+||++. |+|++|++|+|+||+|+|||+|+|+|+ |.+++++|||+|||++||.+++|+++. |.
T Consensus 4 ~~~~~~~d~~~~la~~~~~~~~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~-~~ 82 (457)
T PLN00191 4 AVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD-YL 82 (457)
T ss_pred cccCCCcChHHHHHHHHhhccCCeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc-cC
Confidence 35679999999999999887 689999999999999999999999999 978999999999999999999999865 99
Q ss_pred chhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC
Q 016156 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (394)
Q Consensus 101 g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~ 180 (394)
|+++.+|++.|++.|+|.|+|+||.||++||+.|.++|+|++++.+|.||++|||+|+|+++|+.+|+|||+||+++.|.
T Consensus 83 g~gv~~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~ 162 (457)
T PLN00191 83 GKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGN 162 (457)
T ss_pred CccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999544365
Q ss_pred cccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCCh
Q 016156 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDN 260 (394)
Q Consensus 181 ~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~ 260 (394)
.+.+||+|++|+||||+|+++.+++||||++|.+..+++|+++++.++|+.+|++|+.|||..++.+||+|||.|+++++
T Consensus 163 ~~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~ 242 (457)
T PLN00191 163 KKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDN 242 (457)
T ss_pred CCccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999988778999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
+++|+++++||+++||+++|.|++||||++||+++++|++.|+++..+.+..+|++|++++|.+++++|||.||||||++
T Consensus 243 ~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~ 322 (457)
T PLN00191 243 KEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQ 322 (457)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCc
Confidence 99999999999999998789999999999999646889986554322223457999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|+++..+||+|||++++++++++++|+.++||+++||++|+||||+
T Consensus 323 ~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITe 376 (457)
T PLN00191 323 DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTE 376 (457)
T ss_pred ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 999999999999889999999988999999999999999999999999999985
No 2
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-82 Score=595.24 Aligned_cols=350 Identities=69% Similarity=1.105 Sum_probs=339.5
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|.|.+|++|+|+||+|+|||||+++|+ |++|+++|||+|||.+||.++||+++..|.|+++.+|+..||+.|+|.|+++
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~ 80 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKK 80 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHcc
Confidence 345669999999999999999999999 9999999999999999999999999889999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc-ccccceeeEEeecCCcCC
Q 016156 123 --DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-ELVMPVPAFNVINGGSHA 199 (394)
Q Consensus 123 --dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~-~~~iP~p~~~~i~gG~~~ 199 (394)
|+.+|++||+.|..+|+|.|++.+|+|||.+||+|+|++.|...|+|||+||..+.|+. ..-+|+|.||++|||.|+
T Consensus 81 ~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHA 160 (433)
T KOG2670|consen 81 NLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHA 160 (433)
T ss_pred CCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999888876 467999999999999999
Q ss_pred CCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 016156 200 GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK 279 (394)
Q Consensus 200 ~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gd 279 (394)
++++.+|||||.|.++.+++||++++.++|++||..++.|||...+.|||+|||+|++.+.++.|++|.+|++.+||+|+
T Consensus 161 Gn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~k 240 (433)
T KOG2670|consen 161 GNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGK 240 (433)
T ss_pred cchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEe
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~g 359 (394)
|.|++|+||++||. +|+|+++|++|+.+....+|++++.++|.+++++|||+.|||||+++||++|.++....+|+|+|
T Consensus 241 ikIgmDvAaseF~~-dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVg 319 (433)
T KOG2670|consen 241 VKIGMDVAASEFYK-DGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVG 319 (433)
T ss_pred eEEEEeechhhhhc-CCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEec
Confidence 99999999999996 89999999999988888899999999999999999999999999999999999999999999999
Q ss_pred cCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 360 de~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||+.+||++++++++++++||.+++|+||+|++||
T Consensus 320 DDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtE 354 (433)
T KOG2670|consen 320 DDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTE 354 (433)
T ss_pred CcccccCHHHHHHHHHHhhccceEeeccccccHHH
Confidence 99999999999999999999999999999999986
No 3
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=1.8e-79 Score=620.08 Aligned_cols=351 Identities=64% Similarity=1.047 Sum_probs=330.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|++|+|+||+|+|||+|+|+|+ |.+++++|||+|||++||.++||+++.+|.|+++.+|++.|++.|+|.|+|+
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG~ 81 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIGK 81 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999 9779999999999999999999999778999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-hcCCCC-----CCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC--cccccceeeEEeec
Q 016156 123 DIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT--KELVMPVPAFNVIN 194 (394)
Q Consensus 123 dp~~~e~Id~~l~~-~~~~~~-----~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~--~~~~iP~p~~~~i~ 194 (394)
|+.||++||+.|.+ +|+|.+ ++.+|.||++|||+|+|+++|+.+|+|||+||+++.|. .+..||+|++|+||
T Consensus 82 d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~niin 161 (439)
T PTZ00081 82 DVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVIN 161 (439)
T ss_pred ChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEecc
Confidence 99999999999999 999988 99999999999999999999999999999999544354 34579999999999
Q ss_pred CCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHc
Q 016156 195 GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274 (394)
Q Consensus 195 gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~a 274 (394)
||+|+++++++||||++|.+..++.|+++++.++|+.+|++|+.|||..++.+||+|||.|++++++++|+++++||+++
T Consensus 162 GG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~a 241 (439)
T PTZ00081 162 GGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKA 241 (439)
T ss_pred CcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998777899999999999999999999999999999
Q ss_pred CCCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc
Q 016156 275 GYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV 353 (394)
Q Consensus 275 g~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~ 353 (394)
||+++|.|++||||++||+ ++++|++.|++|.++++..+|++|++++|.+++++|||.||||||+++|+++|++|++++
T Consensus 242 g~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~l 321 (439)
T PTZ00081 242 GYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAI 321 (439)
T ss_pred CCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhh
Confidence 9987899999999999997 368899876654333334689999999999999999999999999999999999999999
Q ss_pred --CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 --DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 --~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
.+||+|||++++|+++++++|+.++||+++||++|+||||+
T Consensus 322 g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe 364 (439)
T PTZ00081 322 GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTE 364 (439)
T ss_pred CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHH
Confidence 59999999988999999999999999999999999999985
No 4
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-78 Score=581.52 Aligned_cols=335 Identities=56% Similarity=0.939 Sum_probs=321.3
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
.|++|.+|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||..||.++||++ .+|.|+|+..|++.+|+.|+|.|+|.
T Consensus 3 ~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~LiG~ 81 (423)
T COG0148 3 AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALIGL 81 (423)
T ss_pred ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999 887 8899999999999999999999 79999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
|+.||..||+.|..+|+|.|++++|.||+.|||+|+++++|+.+|+|||+||| |.....+|+|++|++|||.|+++.
T Consensus 82 da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~NvinGG~HA~n~ 158 (423)
T COG0148 82 DATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNN 158 (423)
T ss_pred CcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---CccccccccceeeeecccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999 655668999999999999999999
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-Cc
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KI 280 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di 280 (394)
+++||||++|.+..++.|+++++.++|+++|+.++.| |.. +.+||+|||.|++.+.+++|+.+.+|++++|++ | +|
T Consensus 159 ~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~-t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i 236 (423)
T COG0148 159 LDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLS-TGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDI 236 (423)
T ss_pred ccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Ccc-ccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcce
Confidence 9999999999999999999999999999999999988 654 449999999999999999999999999999999 5 79
Q ss_pred EEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEE
Q 016156 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358 (394)
Q Consensus 281 ~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~ 358 (394)
.|++|||+++||+ +++|.+. +..+|++|++++|.+++++|||.+|||||+++||++|++|+++++ ++|+
T Consensus 237 ~~alD~Aasefy~-~~~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqiv 307 (423)
T COG0148 237 ALALDVAASEFYK-DGKYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIV 307 (423)
T ss_pred eeeehhhhhhhcc-CCeeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEE
Confidence 9999999999998 6789886 237799999999999999999999999999999999999999998 8999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++++||++.++++|+.+++|.+.|||||+|++||
T Consensus 308 GDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTE 343 (423)
T COG0148 308 GDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTE 343 (423)
T ss_pred CCcceecCHHHHHHHHHhccCceEEEechhcccHHH
Confidence 999999999999999999999999999999999986
No 5
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.3e-74 Score=584.20 Aligned_cols=338 Identities=61% Similarity=0.994 Sum_probs=318.5
Q ss_pred EEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCC
Q 016156 48 SVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR 125 (394)
Q Consensus 48 ~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~ 125 (394)
+|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 48999999999999999999999 877 9999999999999999999999778999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcc
Q 016156 126 DQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAM 205 (394)
Q Consensus 126 ~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~ 205 (394)
+|++||+.|.+++++.+++.+|.||++|||||+||++||.+|+|||+||| |..++++|+|+||+||||+|+++++++
T Consensus 81 dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha~~~~~i 157 (408)
T cd03313 81 DQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKLDF 157 (408)
T ss_pred hHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccccCcccc
Confidence 99999999999999999999999999999999999999999999999999 655678999999999999999999999
Q ss_pred cceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEE
Q 016156 206 QEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIG 283 (394)
Q Consensus 206 ~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~ 283 (394)
||||++|....+++++++++.++|+++|++|+.|+|.+++++|++|+|.|++++++++|+++++||+++||+ | |+.|+
T Consensus 158 qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~ 237 (408)
T cd03313 158 QEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237 (408)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 999999999999999999999999999999888876678899999999999999999999999999999998 5 89999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeEEecC
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDD 361 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I~gde 361 (394)
||+||++||+ +++|.+... .+..+|++|+++++.+++++|+|.||||||+++|+++|++|++++ .+||+|||
T Consensus 238 lD~aas~~~~-~~~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE 311 (408)
T cd03313 238 LDVAASEFYD-EGKYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDD 311 (408)
T ss_pred Eehhhhhhcc-cCcceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCC
Confidence 9999999997 788887311 135789999999999999999999999999999999999999998 69999999
Q ss_pred ccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 362 LLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 362 ~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++++++++++.++||+++||++|+||||+
T Consensus 312 ~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 312 LFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred cccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 878899999999999999999999999999985
No 6
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=5.8e-74 Score=582.16 Aligned_cols=337 Identities=55% Similarity=0.930 Sum_probs=318.6
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|.|+++..+++.|++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~LiG 81 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALIG 81 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999 977 999999999999999999998877899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.||++||+.|.+++++.+++.+|.||++|||+|+||++||.+|+|||+||| |..++++|+|+|+++|||.|+++
T Consensus 82 ~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~GG~ha~~ 158 (425)
T PRK00077 82 LDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHADN 158 (425)
T ss_pred CChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcccccccC
Confidence 999999999999999988888888999999999999999999999999999999 65566899999999999999999
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-C
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-K 279 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-d 279 (394)
++++||+|++|....+++++++++.++|+++|..++.| |. .+++|++|+|.|++++++++|++|++||+++||+ | |
T Consensus 159 ~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~d 236 (425)
T PRK00077 159 NVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236 (425)
T ss_pred chhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999988877 53 5679999999999999999999999999999998 6 8
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeE
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQL 357 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I 357 (394)
|.|+|||||++||+ |++|++. +..||+++++++|.+++++|+|.||||||+++|+++|++|+++++ +||
T Consensus 237 i~l~lD~aas~~~~-~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI 307 (425)
T PRK00077 237 IALALDCAASEFYK-DGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQL 307 (425)
T ss_pred eEEEEehhhhhccc-CCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeE
Confidence 99999999999996 8999985 236899999999999999999999999999999999999999994 999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|||++++++++++++++.++||+++||++|+||||+
T Consensus 308 ~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGite 344 (425)
T PRK00077 308 VGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTE 344 (425)
T ss_pred EcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 9999888899999999999999999999999999985
No 7
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-74 Score=576.20 Aligned_cols=348 Identities=20% Similarity=0.319 Sum_probs=317.4
Q ss_pred CCCcchhhhhHhhhcCCc---ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCc-c-
Q 016156 26 SYRPMRVQCSVASTASSS---AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSV-Y- 99 (394)
Q Consensus 26 ~~~p~d~~g~la~~f~~~---~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~-~- 99 (394)
..+|+|++||||.||..+ ++|++|++|+|+||+|+|||+|+|+++ |.+ +|||+||| ||.++||++..+ |
T Consensus 28 ~~~~~d~~~~l~~~f~~~~~~~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vPSGAStG--EA~elRDgd~~~~~g 102 (518)
T PTZ00378 28 DAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFTLELLNGME---VSSGALLS--PSHGERDGEADATLD 102 (518)
T ss_pred hcCCCCHHHHHHHHHHhhcCCCeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---ECCCCccc--ceeeeecCCcccccC
Confidence 457888889999999998 899999999999999999999999999 864 99999999 999999988544 7
Q ss_pred cchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 100 GGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 100 ~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
.|+++..|++ +.|+|.|+|+|+.||++||+.|..+|+|.+++++|+||+.|||||++.++|+..++|||+|||++.+
T Consensus 103 ~gkgV~~Av~---~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~ 179 (518)
T PTZ00378 103 PAEYTTEALQ---NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFG 179 (518)
T ss_pred CCccHHHHHH---hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhcccc
Confidence 7888988876 6799999999999999999999999999999999999999999999999999999999999996433
Q ss_pred C----cccccceeeEEeecCCcCCCCCCcccceeeccCCC--CCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC
Q 016156 180 T----KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA--TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGF 253 (394)
Q Consensus 180 ~----~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~--~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~ 253 (394)
. ....||+|++|+||||+|+++++++||||++|.+. .++.|+++++.++|++|++ | +.+.+||+|||
T Consensus 180 ~~~~~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~-~~t~vGDEGGf 252 (518)
T PTZ00378 180 SLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------S-HNSSVRSDGSL 252 (518)
T ss_pred ccccCCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------c-ccCccCCCcCc
Confidence 2 24579999999999999999999999999999976 8999999999999999963 2 35789999999
Q ss_pred -CCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccc------------cccC--C---eeeccCCCCCCCCCccc
Q 016156 254 -APNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEF------------FTKD--G---NYDLNFKKQPNDGAHVL 313 (394)
Q Consensus 254 -~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~------------~~~n--g---~Y~~~~~~~~~~~~~~~ 313 (394)
.|++++.+++|+++.+||+++||+ | ||.|++||||||| |+++ + +|.+. + ....+
T Consensus 253 aap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~ 326 (518)
T PTZ00378 253 HWDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDV 326 (518)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCC
Confidence 677889999999999999999999 6 7999999999999 9731 3 68773 1 12247
Q ss_pred CHHHHHHHHHHhhhcCC--ceeeeCCCCCCCHHHHHHHHhhcC--CeEEecCcccc-CHHHHHHHHhcCCCcEEeecccc
Q 016156 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVT-NPKRIAEAIQKKSCNGLLLKVNH 388 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~--i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gde~~~~-~~~~~~~~i~~~a~d~i~ik~~~ 388 (394)
|++|+++||.+++++|| |.+|||||+++|+++|++|+++++ |+|+|||+++| |++.++++|+.++||.++||+||
T Consensus 327 t~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQ 406 (518)
T PTZ00378 327 TGDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCA 406 (518)
T ss_pred CHHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEcccc
Confidence 99999999999999999 999999999999999999999997 99999999999 89999999999999999999999
Q ss_pred ccccCC
Q 016156 389 LFEIKS 394 (394)
Q Consensus 389 ~Ggit~ 394 (394)
+|+|||
T Consensus 407 IGTlSE 412 (518)
T PTZ00378 407 IGTLSD 412 (518)
T ss_pred ceeHHH
Confidence 999985
No 8
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.3e-72 Score=572.38 Aligned_cols=338 Identities=55% Similarity=0.934 Sum_probs=315.5
Q ss_pred EEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 46 VKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 46 I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|+|.+|+.+++|+++.+|.|+++..+++.|++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999 977 99999999999999999999987789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.||++||+.|.+++++.+++.+|.||++|||||+||++||.+|+|||+||| |..+++||+|+++++|||.|+++++
T Consensus 81 ~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~~a~~~~ 157 (425)
T TIGR01060 81 AFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGAHADNNL 157 (425)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccccccCcc
Confidence 9999999999998888888888899999999999999999999999999999 7667799999999999999998889
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~ 281 (394)
++||+|++|.+..+++++++++.++|+++|+.++.| | +.+.+|++|||.|++++++++|+++++||+++|++ | |+.
T Consensus 158 ~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~-~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~ 235 (425)
T TIGR01060 158 DFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-G-LATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVA 235 (425)
T ss_pred CHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceE
Confidence 999999999999999999999999999999888776 5 34678999999999988999999999999999887 6 899
Q ss_pred EEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeEE
Q 016156 282 IGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358 (394)
Q Consensus 282 l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I~ 358 (394)
|++|+||+++|+ ++++|++.. ....+|++|+++++.+++++|+|.||||||+++|+++|++|++++ .+||+
T Consensus 236 l~lD~aas~~~~~~~~~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~ 309 (425)
T TIGR01060 236 LALDCAASEFYDEEDGKYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIV 309 (425)
T ss_pred EEEEccccccccccCceeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEE
Confidence 999999999997 468898861 123579999999998889999999999999999999999999999 69999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+||++++++++++++++.++||+++||++|+||||+
T Consensus 310 gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIte 345 (425)
T TIGR01060 310 GDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTE 345 (425)
T ss_pred eCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 999888899999999999999999999999999985
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-55 Score=421.58 Aligned_cols=263 Identities=29% Similarity=0.459 Sum_probs=236.6
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
+|.+|++|+|+||+|+|||+|+|+|+ |..|+++||+ +++.+|. +++..|++.||+.|+|.|+|+|
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPSD-------------~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPID-------------ENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecCC-------------CCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999 9339999983 2333677 8899999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
+.||++||+.|..+|+|.+++.+|+||+.|||+|+++++|+.+|+|||+||| |.....+|+|++|+||||
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG------- 138 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE------- 138 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC-------
Confidence 9999999999999999999999999999999999999999999999999998 533458999999999998
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~ 281 (394)
++ |||++| .++++ +.++|+++|..|+. +.+++|+++.+|++++||+ | ||.
T Consensus 139 ~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~dv~ 190 (341)
T PRK08350 139 NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLEVA 190 (341)
T ss_pred ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCccccEE
Confidence 45 999998 68999 78999999987752 3489999999999999999 6 799
Q ss_pred EEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC-CeEEec
Q 016156 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGD 360 (394)
Q Consensus 282 l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~-i~I~gd 360 (394)
+++|+. ..+|++|++ +|+++|||.+|| ||+++ ++|++|+++.+ ++|+||
T Consensus 191 ~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~g~~iqiVGD 240 (341)
T PRK08350 191 LGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAGTHGVFIDGE 240 (341)
T ss_pred EeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhcCCceEEEcc
Confidence 999991 024788888 679999999999 99966 99999999943 899999
Q ss_pred CccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 361 e~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++||+.. ++++||.++||+||+|+|||
T Consensus 241 DLfvTN~~~-----~~~~~NaiLiK~NQIGTltE 269 (341)
T PRK08350 241 YLFRTRNIL-----DRRYYNALSIKPINLGTLTD 269 (341)
T ss_pred cccccChhH-----hhCccceEEEeeccceeHHH
Confidence 999999754 88999999999999999986
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=2.3e-48 Score=374.07 Aligned_cols=212 Identities=59% Similarity=1.012 Sum_probs=186.9
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
..||+|++|+||||+|+++++++|||||+|.+..++.|+++++.++|++||+.|+.|+|...+.+||+|||.|++++.++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 36999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+|++|.+||+++||+++|.|++|||||+||+ ++|+|++.++.+..+.+..+|++|++++|.+++++|||.+|||||+++
T Consensus 82 aL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~ed 161 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDED 161 (295)
T ss_dssp HHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT
T ss_pred HHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEcccccc
Confidence 9999999999999988999999999999996 579999997765555556889999999999999999999999999999
Q ss_pred CHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++|++|+++++ |+|+|||+++||+++++++++.++||.+++|+||+|+|||
T Consensus 162 D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte 216 (295)
T PF00113_consen 162 DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTE 216 (295)
T ss_dssp -HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHH
T ss_pred chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHH
Confidence 9999999999998 9999999999999999999999999999999999999985
No 11
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=3.8e-41 Score=333.99 Aligned_cols=260 Identities=20% Similarity=0.239 Sum_probs=197.5
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
||++|++... ++.|+|+|| |++ |+||+.. . ..++..+++.|+|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi~----------G~GE~~~----------~---~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGTV----------GYANTTG----------G---PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCCe----------EEecCCC----------c---hHHHHHHHHHHHHHhCCCC
Confidence 6899997432 689999999 986 9998621 1 1234457788999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++++|+.|++.....+++++...|++|||+||||+.||.+|+|||+||| |..++++|+ |.+.. + ..
T Consensus 51 p~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~--y~~~~-~--~~--- 119 (341)
T cd03327 51 PSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPA--YASGL-Y--PT--- 119 (341)
T ss_pred chHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEE--EEECC-C--CC---
Confidence 9999999999976422233345556799999999999999999999999999 766778776 44321 1 11
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~ 283 (394)
+. +...+++.++..+||+++| .|.|. +..-+ ..+.+.+.++++++|+++ | +++.|+
T Consensus 120 ~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~-----~~~~~-~~~~~~d~~~v~avr~~~---g--~~~~l~ 175 (341)
T cd03327 120 DL---------DELPDEAKEYLKEGYRGMK----MRFGY-----GPSDG-HAGLRKNVELVRAIREAV---G--YDVDLM 175 (341)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ECCCC-----CCCcc-hHHHHHHHHHHHHHHHHh---C--CCCcEE
Confidence 11 2235677777788899998 45331 10000 012233455666666665 3 489999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCcc
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~ 363 (394)
+|+ |+.| +.++++++ .+.+++|++.|||||++++|+++|++|++++++||++||.
T Consensus 176 vDa--------n~~~---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~- 230 (341)
T cd03327 176 LDC--------YMSW---------------NLNYAIKM-ARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEH- 230 (341)
T ss_pred EEC--------CCCC---------------CHHHHHHH-HHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccC-
Confidence 999 4544 56788875 4558999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 364 VTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 231 ~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~ 261 (341)
T cd03327 231 EYTVYGFKRLLEGRAVDILQPDVNWVGGITE 261 (341)
T ss_pred ccCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 4679999999999999999999999999985
No 12
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.8e-40 Score=327.31 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=185.9
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
..|.|+|+|+|++ |+||+ |.+ ..+...+++.++|.|+|+||.++++||+.|.+....
T Consensus 29 ~~v~V~v~~~G~~----------G~Ge~----------~~~---~~~~~~i~~~~~p~liG~d~~~~~~l~~~~~~~~~~ 85 (352)
T cd03328 29 TLVLVEVRAGGRT----------GLGYT----------YAD---AAAAALVDGLLAPVVEGRDALDPPAAWEAMQRAVRN 85 (352)
T ss_pred eEEEEEEEcCCcE----------EEeCC----------CCh---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Confidence 3578999866765 88874 222 233445778899999999999999999999873211
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
...+++...|++|||+||||+.||.+|+|||+||| | .++++|+ |.+ ++... .+. +...++
T Consensus 86 ~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g-~~~~v~~--y~s--~~~~~---~~~---------e~~~~~ 145 (352)
T cd03328 86 AGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---R-AHDSVPV--YGS--GGFTS---YDD---------DRLREQ 145 (352)
T ss_pred cCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C-CCCCeEE--EEe--cCCCC---CCH---------HHHHHH
Confidence 22234545799999999999999999999999999 6 4567776 443 22111 111 224567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.++..+||+++| .|.| . +.+.+.++++.+|+++ | +++.|++|+ |+.|
T Consensus 146 a~~~~~~Gf~~~K----ikvg-------~------~~~~d~~~v~~vRe~~---G--~~~~l~vDa--------N~~~-- 193 (352)
T cd03328 146 LSGWVAQGIPRVK----MKIG-------R------DPRRDPDRVAAARRAI---G--PDAELFVDA--------NGAY-- 193 (352)
T ss_pred HHHHHHCCCCEEE----eecC-------C------CHHHHHHHHHHHHHHc---C--CCCeEEEEC--------CCCC--
Confidence 7777778898888 4422 1 1123355566666655 3 489999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhh--cCCeEEecCccccCHHHHHHHHhcCC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSS--VDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~--~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
|.++++++. +.+++|++.|||||++++|+++|++|+++ +++||++||. +.+.++++++++.++
T Consensus 194 -------------~~~~A~~~~-~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~-~~~~~~~~~li~~~a 258 (352)
T cd03328 194 -------------SRKQALALA-RAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEY-AYTLAYFRRLLEAHA 258 (352)
T ss_pred -------------CHHHHHHHH-HHHHHhCcchhhCCCChhhHHHHHHHHhhCCCCCCEEeccc-ccCHHHHHHHHHcCC
Confidence 567888864 45899999999999999999999999999 7899999997 567999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 259 ~div~~d~~~~GGit~ 274 (352)
T cd03328 259 VDVLQADVTRCGGVTG 274 (352)
T ss_pred CCEEecCccccCCHHH
Confidence 9999999999999985
No 13
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.3e-38 Score=317.45 Aligned_cols=263 Identities=17% Similarity=0.250 Sum_probs=200.4
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+- .+.+ ...|.|+|+|+ |++ |+||+. .|.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~----------G~Ge~~--------~~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVT----------GHSYLF--------TYTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCe----------EEEeee--------cCCCCcHHHHHHH
Confidence 689999988772 1222 35789999999 986 999852 2445555555554
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++ .++|.|+|+++ +.+++|+.|.+.....+.+++...|++|||+||||+.||.+|+|||+||| |. ++++|+ |
T Consensus 63 ~~-~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~-~~~v~~--y 134 (355)
T cd03321 63 LD-DMAALLVGEPL-APAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GN-PRPVQA--Y 134 (355)
T ss_pred HH-HHHHHhCCCCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCeeE--E
Confidence 44 69999999986 67889888876321122234556799999999999999999999999999 65 455554 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ +. ++..+++.++..+||+++| .|.| .++.+.+.+.++++|++
T Consensus 135 ~s~~~~-------~~---------~~~~~~a~~~~~~Gf~~~K----iKvg------------~~~~~~d~~~v~air~~ 182 (355)
T cd03321 135 DSHGLD-------GA---------KLATERAVTAAEEGFHAVK----TKIG------------YPTADEDLAVVRSIRQA 182 (355)
T ss_pred EeCCCC-------hH---------HHHHHHHHHHHHhhhHHHh----hhcC------------CCChHhHHHHHHHHHHh
Confidence 543211 11 2346788888889999999 4533 12333445666666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| +.++++++..+ +++|++.|||||++++|+++|++|+
T Consensus 183 ~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~l~ 233 (355)
T cd03321 183 V---G--DGVGLMVDY--------NQSL---------------TVPEAIERGQA-LDQEGLTWIEEPTLQHDYEGHARIA 233 (355)
T ss_pred h---C--CCCEEEEeC--------CCCc---------------CHHHHHHHHHH-HHcCCCCEEECCCCCcCHHHHHHHH
Confidence 5 3 489999999 5544 56788886555 7999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 234 ~~~~ipia~~E~-~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~ 276 (355)
T cd03321 234 SALRTPVQMGEN-WLGPEEMFKALSAGACDLVMPDLMKIGGVTG 276 (355)
T ss_pred HhcCCCEEEcCC-CcCHHHHHHHHHhCCCCeEecCHhhhCCHHH
Confidence 999999999997 5689999999999999999999999999984
No 14
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=3.6e-39 Score=326.49 Aligned_cols=273 Identities=17% Similarity=0.244 Sum_probs=201.6
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|+...+ ..+++.+.|+|+|+ |++ |+||+.. .+.+ ..+...+++.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~----------G~GE~~~---------~~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVT----------GLGDATL---------NGRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCe----------EEEeccc---------CCch-HHHHHHHHHHHHHHcCCC
Confidence 89999998655 34456899999999 986 9999631 1222 233455778899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|.+. ...+.+.+...|++|||+||||+.||.+|+|||+||| |..++++|+ |++.. +.
T Consensus 59 d~~~~e~~~~~l~~~-~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~--y~~~~-~~----- 126 (404)
T PRK15072 59 DAHRIEDIWQYLYRG-AYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMV--YGHAN-GR----- 126 (404)
T ss_pred ChhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEE--EEeCC-CC-----
Confidence 999999999999762 1233334556799999999999999999999999999 766677776 44321 10
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCc---ccCCCC-C--CCCCC----------------CCh
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDAC---NVGDEG-G--FAPNV----------------QDN 260 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~---~vg~~g-~--~~~~~----------------~~~ 260 (394)
+.++ ..+++.++..+||+++| .|.|.... ...+.+ + +.+.. +.+
T Consensus 127 -~~~~---------~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 192 (404)
T PRK15072 127 -DIDE---------LLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFV 192 (404)
T ss_pred -CHHH---------HHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccHHHHHHH
Confidence 1222 35677777778899998 45441100 000000 0 00100 111
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
.+.+++||+++ | +++.|++|+ |+.| |.++++++.. .+++|++.|||||+++
T Consensus 193 ~~~v~avre~~---G--~~~~l~vDa--------N~~w---------------~~~~A~~~~~-~l~~~~l~~iEeP~~~ 243 (404)
T PRK15072 193 PKLFEAVRNKF---G--FDLHLLHDV--------HHRL---------------TPIEAARLGK-SLEPYRLFWLEDPTPA 243 (404)
T ss_pred HHHHHHHHhhh---C--CCceEEEEC--------CCCC---------------CHHHHHHHHH-hccccCCcEEECCCCc
Confidence 34666666665 3 489999999 4544 5678888644 4899999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|++++++||++||. ..++++++++++.+++|++|+|++++||||+
T Consensus 244 ~d~~~~~~L~~~~~iPIa~dEs-~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 244 ENQEAFRLIRQHTTTPLAVGEV-FNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred cCHHHHHHHHhcCCCCEEeCcC-ccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 9999999999999999999997 4679999999999999999999999999984
No 15
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=3.5e-38 Score=317.40 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=180.8
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
.++.|+|+|+ |++ |+||+. .++ .+...+++.|+|.|+|+||.+++++|+.|++...
T Consensus 57 ~~vlVrI~td~G~~----------G~Ge~~----------~~~---~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~ 113 (394)
T PRK15440 57 GTLVVEVEAENGQV----------GFAVST----------AGE---MGAFIVEKHLNRFIEGKCVSDIELIWDQMLNATL 113 (394)
T ss_pred ceEEEEEEECCCCE----------EEEeCC----------CcH---HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhcc
Confidence 5789999999 886 899842 111 2234577889999999999999999999976422
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
....+++..+|++|||+||||+.||.+|+|||+||| |..++++|+ |++ ++ . .+
T Consensus 114 ~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~--~~-~-------------------~~ 166 (394)
T PRK15440 114 YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQF--YAT--GA-R-------------------PD 166 (394)
T ss_pred ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEE--Eec--CC-C-------------------hH
Confidence 223334556799999999999999999999999999 766778775 432 21 0 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGD-EGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~-~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
.+. ..||+++| .|.| .|. +| ..+++.+.++++.+|+++ | +|+.|++|| |+.|
T Consensus 167 ~a~---~~Gf~~~K----ik~~-----~g~~~g--~~~~~~di~~v~avReav---G--~d~~l~vDa--------N~~~ 219 (394)
T PRK15440 167 LAK---EMGFIGGK----MPLH-----HGPADG--DAGLRKNAAMVADMREKV---G--DDFWLMLDC--------WMSL 219 (394)
T ss_pred HHH---hCCCCEEE----EcCC-----cCcccc--hHHHHHHHHHHHHHHHhh---C--CCCeEEEEC--------CCCC
Confidence 111 34788887 4432 110 11 112233455666666665 3 489999999 5545
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhc
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~ 376 (394)
|.++++++ .+.+++|++.|||||++++|++++++|+++++ +||++||. ..++++++++++.
T Consensus 220 ---------------~~~~Ai~~-~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~-~~~~~~~~~li~~ 282 (394)
T PRK15440 220 ---------------DVNYATKL-AHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEH-EATLQGFRTLLEM 282 (394)
T ss_pred ---------------CHHHHHHH-HHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCC-ccCHHHHHHHHHc
Confidence 56788885 45589999999999999999999999999977 78999997 4679999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 283 ~a~Divq~d~~~~GGit~ 300 (394)
T PRK15440 283 GCIDIIQPDVGWCGGLTE 300 (394)
T ss_pred CCCCEEeCCccccCCHHH
Confidence 999999999999999985
No 16
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=6.5e-38 Score=313.08 Aligned_cols=252 Identities=16% Similarity=0.237 Sum_probs=195.0
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
||++|+.... +.+++.+.|+|+|+ |++ |+||+.. .+. ...+...|++.|+|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~~----------G~GE~~~---------~~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGVT----------GLGDATL---------NGR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCCe----------EEEeccc---------CCC-HHHHHHHHHHHHHHHcCCCC
Confidence 6899998433 34466799999999 886 9998631 111 22345567888999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++.+|+.|... .....+.....|++|||+||||+.||.+|+|||+||| |..++++|+ |++.. + .
T Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~--ya~~~-~------~ 125 (361)
T cd03322 59 ANRIEDIWQYLYRG-AYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMV--YSHAS-G------R 125 (361)
T ss_pred hhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeE--EEeCC-C------C
Confidence 99999999999762 1122223445699999999999999999999999999 766677776 44321 1 0
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~ 283 (394)
+.+ ...+++.++..+||+++| .| + .+.++++|+++ | +++.|+
T Consensus 126 ~~~---------~~~~~a~~~~~~Gf~~~K----iK-------v-------------~~~v~avre~~---G--~~~~l~ 167 (361)
T cd03322 126 DIP---------ELLEAVERHLAQGYRAIR----VQ-------L-------------PKLFEAVREKF---G--FEFHLL 167 (361)
T ss_pred CHH---------HHHHHHHHHHHcCCCeEe----eC-------H-------------HHHHHHHHhcc---C--CCceEE
Confidence 111 234666666677888887 22 1 34667777665 3 489999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCcc
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~ 363 (394)
+|+ |+.| |.++++++. +.+++|++.|||||++++|+++|++|++++++||++||.
T Consensus 168 vDa--------N~~w---------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~- 222 (361)
T cd03322 168 HDV--------HHRL---------------TPNQAARFG-KDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEV- 222 (361)
T ss_pred EEC--------CCCC---------------CHHHHHHHH-HHhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccC-
Confidence 999 5544 567888764 458999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 364 VTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 223 ~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 223 FNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 5679999999999999999999999999984
No 17
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=2.1e-37 Score=311.70 Aligned_cols=266 Identities=16% Similarity=0.186 Sum_probs=196.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|+++.+ .. .++.|+|+|+ |++ |+||+.. .+ ....+...++ .++|.|+|+
T Consensus 1 mkI~~i~~~~~-~~---~~vlV~v~t~dG~~----------G~GE~~~---------~~-~~~~~~~~~~-~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-PP---RWLFLKIETDEGIV----------GWGEPVV---------EG-RARTVEAAVH-ELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-CC---CEEEEEEEECCCCe----------EEecccc---------CC-chHHHHHHHH-HHHHHhCCC
Confidence 79999999877 22 3588999999 986 9998632 11 1223333344 699999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|+.. ...+.+.....|++|||+||||+.||.+|+|||+||| |+.++++|+ |.+++++
T Consensus 56 d~~~~~~~~~~l~~~-~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~--~~~~~~~------ 123 (382)
T PRK14017 56 DPRRIEDHWQVMYRG-GFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRV--YSWIGGD------ 123 (382)
T ss_pred CHHHHHHHHHHHHHh-cccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeE--eEeCCCC------
Confidence 999999999999652 1122222335699999999999999999999999999 765677776 4433211
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
+.+ ...+++.++..+||+.+| .|.|.. .+..++ ..+++.+.++++++|+++ | +++.|
T Consensus 124 -~~~---------~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g--~~~~l 180 (382)
T PRK14017 124 -RPA---------DVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---G--PEIGI 180 (382)
T ss_pred -CHH---------HHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---C--CCCeE
Confidence 112 235677777778899888 442210 000000 011233455566666655 3 48999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~ 362 (394)
++|+ |+.| |.++++++. +.++++++.|||||++++|++++++|++++++||++||.
T Consensus 181 ~vDa--------N~~w---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 236 (382)
T PRK14017 181 GVDF--------HGRV---------------HKPMAKVLA-KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGER 236 (382)
T ss_pred EEEC--------CCCC---------------CHHHHHHHH-HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCc
Confidence 9999 5655 466888754 458999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 363 LVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 237 -~~~~~~~~~li~~~a~d~v~~d~~~~GGit~ 267 (382)
T PRK14017 237 -LFSRWDFKRVLEAGGVDIIQPDLSHAGGITE 267 (382)
T ss_pred -cCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 5779999999999999999999999999974
No 18
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=310.44 Aligned_cols=246 Identities=21% Similarity=0.278 Sum_probs=187.1
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |++ |+||+.... +...+. .... + .+++.++|+||.+++.+|+.|....
T Consensus 30 ~~v~v~i~~d~G~~----------G~GE~~~~~------~~~~~~-~~~~-~--~~~~~l~g~d~~~i~~~~~~~~~~~- 88 (372)
T COG4948 30 TRVIVEITTDDGIV----------GWGEAVPGG------RARYGE-EAEA-V--LLAPLLIGRDPFDIERIWQKLYRAG- 88 (372)
T ss_pred eEEEEEEEECCCce----------eeccccCcc------cccchh-hhhH-H--HHHHHhcCCCHHHHHHHHHHHHHhc-
Confidence 4799999999 986 999974321 111111 1111 1 5899999999999999999998742
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
..+.+++..+|++|||+||||+.||.+|+|||+||| |..++++++ |++..++ .. ..+...
T Consensus 89 ~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~--y~~~~~~------~~---------~~e~~~ 148 (372)
T COG4948 89 FARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA--YASGGGG------ED---------PEEMAA 148 (372)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE--EEecCCC------CC---------CHHHHH
Confidence 222456667899999999999999999999999999 776677665 4442221 00 112233
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC-CcEEEEecccccccccCCe
Q 016156 220 EALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 220 ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~ 297 (394)
++.+... +||+.+| .|.| ..+.+.+.++++++|+++ | ++.|++|+ |+.
T Consensus 149 ~~~~~~~~~G~~~~K----lk~g------------~~~~~~d~~~v~avRe~~------g~~~~l~iDa--------n~~ 198 (372)
T COG4948 149 EAARALVELGFKALK----LKVG------------VGDGDEDLERVRALREAV------GDDVRLMVDA--------NGG 198 (372)
T ss_pred HHHHHHHhcCCceEE----ecCC------------CCchHHHHHHHHHHHHHh------CCCceEEEeC--------CCC
Confidence 3444444 5898888 4533 122224467788888877 6 89999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |..+++++ .+.+++|+|.|||||++++|++++++|++.+.+||+.||. +.+.++++++++.+
T Consensus 199 ~---------------~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs-~~~~~~~~~l~~~~ 261 (372)
T COG4948 199 W---------------TLEEAIRL-ARALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGES-VYTRWDFRRLLEAG 261 (372)
T ss_pred c---------------CHHHHHHH-HHHhcccCcceEECCCCccCHHHHHHHHhcCCCCEecCcc-cccHHHHHHHHHcC
Confidence 5 46678875 4558999999999999999999999999998899999997 57899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 262 a~div~~d~~~~GGite 278 (372)
T COG4948 262 AVDIVQPDLARVGGITE 278 (372)
T ss_pred CCCeecCCccccCCHHH
Confidence 99999999999999985
No 19
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.3e-37 Score=305.60 Aligned_cols=262 Identities=18% Similarity=0.210 Sum_probs=193.8
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
+|++|+.+.+ + .+.+.|+|+|+ |++ |+||+... + ....+...+++ |+|.|+|+|
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~~----------G~GE~~~~---------~-~~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGVV----------GWGEPTVE---------G-KARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCCE----------EEeccccC---------C-cchHHHHHHHH-HHHHhCCCC
Confidence 5889998766 2 35799999999 986 99987321 1 12233444566 999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++++|+.|... .....+....+|++|||+||||+.||.+|+|||++|| |..++++|++ .+++++
T Consensus 56 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~~--~~~~~~------- 122 (352)
T cd03325 56 PMNIEHHWQVMYRG-GFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRVY--SWIGGD------- 122 (352)
T ss_pred HHHHHHHHHHHHHh-cCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEEE--EeCCCC-------
Confidence 99999999999652 1122222335699999999999999999999999999 7556777764 332211
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC---CCCCChHHHHHHHHHHHHHcCCCCCc
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFA---PNVQDNREGLVLLTDAIEKAGYTGKI 280 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~---~~~~~~~~~l~~v~~Av~~ag~~gdi 280 (394)
+.+ ...+++.++..+||+.+| .|.|. ...+. .+.+.+.+.++.+|+++ | +++
T Consensus 123 ~~~---------~~~~~~~~~~~~Gf~~~K----iKvg~-------~~~~~~~~~~~~~D~~~i~avr~~~---g--~~~ 177 (352)
T cd03325 123 RPS---------DVAEAARARREAGFTAVK----MNATE-------ELQWIDTSKKVDAAVERVAALREAV---G--PDI 177 (352)
T ss_pred CHH---------HHHHHHHHHHHcCCCEEE----ecCCC-------CcccCCCHHHHHHHHHHHHHHHHhh---C--CCC
Confidence 111 134566666677888888 45331 11111 11223344555555554 4 589
Q ss_pred EEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEec
Q 016156 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360 (394)
Q Consensus 281 ~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gd 360 (394)
.|++|+ |+.| |.++++++.. .++++++.|||||++++|++++++|++++++||++|
T Consensus 178 ~l~vDa--------N~~~---------------~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~d 233 (352)
T cd03325 178 DIGVDF--------HGRV---------------SKPMAKDLAK-ELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATG 233 (352)
T ss_pred EEEEEC--------CCCC---------------CHHHHHHHHH-hccccCCcEEECCCCccCHHHHHHHHHhCCCCEEec
Confidence 999999 5655 5678888644 489999999999999999999999999999999999
Q ss_pred CccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 361 e~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|. +.++++++++++.+++|++|+|++++||+|+
T Consensus 234 Es-~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~ 266 (352)
T cd03325 234 ER-LFSRWDFKELLEDGAVDIIQPDISHAGGITE 266 (352)
T ss_pred cc-ccCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 97 5689999999999999999999999999984
No 20
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5e-37 Score=310.96 Aligned_cols=266 Identities=17% Similarity=0.177 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEe-------cC---CC-C---ceEEEEEEEC--CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHH
Q 016156 44 AKVKSVKARQII-------DS---RG-N---PTVEVDLITD--DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNA 107 (394)
Q Consensus 44 ~~I~~V~~r~v~-------~~---~g-~---~tv~V~V~td--G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a 107 (394)
.+|++|+++.+- .. .. . ..+.|+|+|| |++ |+||+.. .+.+...+
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~----------G~Ge~~~---------~~~~~~~~ 61 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLK----------GHGLTFT---------IGRGNEIV 61 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCE----------EEEEecc---------CCCchHHH
Confidence 378999988872 11 11 1 3689999999 665 9998732 12223333
Q ss_pred HHHhHHhHhhhhcCCCCCCHHHHHHHHHH-hcCC----C-C-CCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC
Q 016156 108 VKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGT----P-N-KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (394)
Q Consensus 108 ~~~I~~~l~p~LiG~dp~~~e~Id~~l~~-~~~~----~-~-~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~ 180 (394)
.. +.+.++|.|+|+||.+++++++.|++ +... + . .+++...|++|||+||||++||.+|+|||+||| |.
T Consensus 62 ~~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g~ 137 (415)
T cd03324 62 CA-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---DM 137 (415)
T ss_pred HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---CC
Confidence 33 34679999999999999666665554 2110 1 1 123435799999999999999999999999999 53
Q ss_pred cc-----------------------------------------cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 181 KE-----------------------------------------LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 181 ~~-----------------------------------------~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
.+ +++|+ |++ ++|+.. .+. +...+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~~~---------~~~~~ 202 (415)
T cd03324 138 TPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---YSD---------EKLRR 202 (415)
T ss_pred CHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---CCH---------HHHHH
Confidence 22 34444 432 222110 111 22356
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.++..+||+++| .|.| .+.+.+.++++.+|+++ | +++.|++|+ |+.|
T Consensus 203 ~a~~~~~~Gf~~~K----iKvg-------------~~~~~d~~~v~avRe~v---G--~~~~L~vDa--------N~~w- 251 (415)
T cd03324 203 LCKEALAQGFTHFK----LKVG-------------ADLEDDIRRCRLAREVI---G--PDNKLMIDA--------NQRW- 251 (415)
T ss_pred HHHHHHHcCCCEEE----EeCC-------------CCHHHHHHHHHHHHHhc---C--CCCeEEEEC--------CCCC-
Confidence 77777778898888 4422 12223345566666655 4 489999999 5544
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc---CCeEEecCccccCHHHHHHHHhc
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV---DIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~---~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
+.++++++. +.+++|++.|||||++++|+++|++|++++ ++||++||. +.++++++++++.
T Consensus 252 --------------~~~~A~~~~-~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs-~~~~~~~~~ll~~ 315 (415)
T cd03324 252 --------------DVPEAIEWV-KQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEH-CQNRVVFKQLLQA 315 (415)
T ss_pred --------------CHHHHHHHH-HHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCc-cCCHHHHHHHHHc
Confidence 567888864 458999999999999999999999999998 699999997 4679999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 316 ~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 316 GAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred CCCCEEEeCccccCCHHH
Confidence 999999999999999985
No 21
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=3.7e-37 Score=309.43 Aligned_cols=253 Identities=18% Similarity=0.206 Sum_probs=185.1
Q ss_pred CceEEEEEEEC-CeeeeeccCCC-CCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCC----------CH
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGA-STGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR----------DQ 127 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~-~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~----------~~ 127 (394)
..++.|+|+|| |.. |. .+|+||+.. +.... ...|++.++|.|+|+||. ++
T Consensus 26 ~~~~lV~v~td~~~~------G~~~~G~Ge~~~----------~~~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~~~~~ 87 (385)
T cd03326 26 LTTSLVAVVTDVVRD------GRPVVGYGFDSI----------GRYAQ--GGLLRERFIPRLLAAAPDSLLDDAGGNLDP 87 (385)
T ss_pred cEEEEEEEEeccccC------CCceeEEEeccC----------CchhH--HHHHHHHHHHHhcCCChHHhhhcccccCCH
Confidence 35689999999 442 21 359998631 11111 234788899999999999 44
Q ss_pred HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc-----ccccceeeEEeecCCcCCCCC
Q 016156 128 AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-----ELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 128 e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~-----~~~iP~p~~~~i~gG~~~~~~ 202 (394)
+++|+.|+... ....++....|+||||+||||+.||.+|+|||+||| |+. ++++|+ |.+ ++...+.
T Consensus 88 ~~l~~~~~~~~-~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~--y~~--~~~~~~~- 158 (385)
T cd03326 88 ARAWAAMMRNE-KPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPV--YAA--GGYYYPG- 158 (385)
T ss_pred HHHHHHHHhcC-ccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEE--EEe--cCCCCCC-
Confidence 99999997521 112223445799999999999999999999999999 532 356665 543 2211100
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
.+. +...+++.++..+||+++| .|.| ..+.+.+.++++.+|+++ | +++.|
T Consensus 159 ~~~---------~~~~~~a~~~~~~Gf~~~K----ikvg------------~~~~~~di~~v~avRe~~---G--~~~~l 208 (385)
T cd03326 159 DDL---------GRLRDEMRRYLDRGYTVVK----IKIG------------GAPLDEDLRRIEAALDVL---G--DGARL 208 (385)
T ss_pred CCH---------HHHHHHHHHHHHCCCCEEE----EeCC------------CCCHHHHHHHHHHHHHhc---C--CCCeE
Confidence 011 1235677777777888888 4433 122233355566666555 4 48999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~ 362 (394)
++|+ |+.| |.++++++ .+.+++|++.|||||++++|++++++|++++++||++||.
T Consensus 209 ~vDa--------N~~w---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs 264 (385)
T cd03326 209 AVDA--------NGRF---------------DLETAIAY-AKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGEN 264 (385)
T ss_pred EEEC--------CCCC---------------CHHHHHHH-HHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCC
Confidence 9999 5655 56788885 4558999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHhcCCC----cEEeeccccccccCC
Q 016156 363 LVTNPKRIAEAIQKKSC----NGLLLKVNHLFEIKS 394 (394)
Q Consensus 363 ~~~~~~~~~~~i~~~a~----d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++ |++|+|++++||||+
T Consensus 265 -~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 265 -LFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred -cCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 5679999999999998 999999999999985
No 22
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=5.9e-37 Score=307.00 Aligned_cols=249 Identities=21% Similarity=0.261 Sum_probs=190.6
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+.+.|+|+|+ |.+ |+||+.... .|+|.+++...+...+++.++|.|+|+|+.+++++|+.|...-
T Consensus 27 ~~~~~V~v~t~~G~~----------G~Ge~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGVI----------GYGEGTTIG---GLWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCCe----------EEEecCCCC---CCccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 46789999999 886 999974321 1346666777767778888999999999999999999887631
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.. ...|++|||+||||+.||.+|+|||+||| |..++++|++ .+++.+ +.. ..+
T Consensus 94 -~~-----~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~~~--~~~~~~-------~~~---------~~~ 146 (368)
T TIGR02534 94 -AG-----NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVDVT--WTLASG-------DTD---------RDI 146 (368)
T ss_pred -cC-----CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEEE--EEEeCC-------CHH---------HHH
Confidence 11 12489999999999999999999999999 7666777764 332211 001 123
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 219 AEALRMG-SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 219 ~ea~~~~-~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
+++.++. .+||+++| .|.| ..+.+.+.++++.+|+++ | +++.|++|+ |+.
T Consensus 147 ~~~~~~~~~~Gf~~~K----iKvg------------~~~~~~d~~~v~~~re~~---g--~~~~l~~Da--------N~~ 197 (368)
T TIGR02534 147 AEAEERIEEKRHRSFK----LKIG------------ARDPADDVAHVVAIAKAL---G--DRASVRVDV--------NAA 197 (368)
T ss_pred HHHHHHHHhcCcceEE----EEeC------------CCCcHHHHHHHHHHHHhc---C--CCcEEEEEC--------CCC
Confidence 4444444 35788887 5533 122333455666666655 3 489999999 555
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |.++++++. +.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+
T Consensus 198 ~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~~~~~ 260 (368)
T TIGR02534 198 W---------------DERTALHYL-PQLADAGVELIEQPTPAENREALARLTRRFNVPIMADES-VTGPADALAIAKAS 260 (368)
T ss_pred C---------------CHHHHHHHH-HHHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCcc-cCCHHHHHHHHHhC
Confidence 5 567888754 458999999999999999999999999999999999997 57899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 261 ~~d~~~~d~~~~GGi~~ 277 (368)
T TIGR02534 261 AADVFALKTTKSGGLLE 277 (368)
T ss_pred CCCEEEEcccccCCHHH
Confidence 99999999999999974
No 23
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6.8e-37 Score=306.25 Aligned_cols=249 Identities=20% Similarity=0.263 Sum_probs=191.7
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
...+.|+|+|+ |++ |+||+..... +.|.+++...++..+++.++|.|+|+||.+.+++|+.|.+..
T Consensus 28 ~~~~~V~v~t~~G~~----------G~GE~~~~~~---~~~~~~~~~~~~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~ 94 (365)
T cd03318 28 QSLVLVRLTTSDGVV----------GIGEATTPGG---PAWGGESPETIKAIIDRYLAPLLIGRDATNIGAAMALLDRAV 94 (365)
T ss_pred cceEEEEEEECCCCe----------EEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChHHHHHHHHHHHHHh
Confidence 35689999999 886 9999743211 235566666667778888999999999999999999997631
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.. ...|++|||+||||+.||.+|+|+|++|| |..++++|++ .+++.+ +. ....
T Consensus 95 -~~-----~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v~~~--~~~~~~-------~~---------~~~~ 147 (365)
T cd03318 95 -AG-----NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSLPVA--WTLASG-------DT---------ERDI 147 (365)
T ss_pred -cC-----CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCceEEE--EEEeCC-------CH---------HHHH
Confidence 11 13589999999999999999999999999 7656777764 333221 01 1234
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 219 AEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 219 ~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
+++.++..+| |+++| .|.| ..+.+.+.+.++++|+++ | +++.|++|+ |+.
T Consensus 148 ~~~~~~~~~G~f~~~K----iKvg------------~~~~~~d~~~v~avr~~~---g--~~~~l~iDa--------N~~ 198 (365)
T cd03318 148 AEAEEMLEAGRHRRFK----LKMG------------ARPPADDLAHVEAIAKAL---G--DRASVRVDV--------NQA 198 (365)
T ss_pred HHHHHHHhCCCceEEE----EEeC------------CCChHHHHHHHHHHHHHc---C--CCcEEEEEC--------CCC
Confidence 5666677778 88888 4533 122333345555555554 3 389999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |.++++++. +.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+
T Consensus 199 ~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~i~~~ 261 (365)
T cd03318 199 W---------------DESTAIRAL-PRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADES-VSGPADAFELARRG 261 (365)
T ss_pred C---------------CHHHHHHHH-HHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCcc-cCCHHHHHHHHHhC
Confidence 5 467888754 458999999999999999999999999999999999997 56899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 262 ~~d~~~~d~~~~GGit~ 278 (365)
T cd03318 262 AADVFSLKIAKSGGLRR 278 (365)
T ss_pred CCCeEEEeecccCCHHH
Confidence 99999999999999984
No 24
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.4e-36 Score=304.29 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=183.2
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |++ |+||... .+ .+...+.+.|+|.|+|+||.+.+++|+.|.+..
T Consensus 33 ~~~~Vri~td~G~~----------G~G~~~~-------~~------~~~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~- 88 (368)
T cd03329 33 KLALLTIETDEGAK----------GHAFGGR-------PV------TDPALVDRFLKKVLIGQDPLDRERLWQDLWRLQ- 88 (368)
T ss_pred eEEEEEEEECCCCe----------EEEecCC-------ch------hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh-
Confidence 5799999999 986 8887421 01 123456778999999999999999999998631
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
. +....|++|||+||||+.||.+|+|||+||| | .++++|+ |.+++.+....+..+.+ ...+
T Consensus 89 -~---~~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g-~~~~v~~--y~s~~~~~~~~~~~~~~---------~~~~ 149 (368)
T cd03329 89 -R---GLTDRGLGLVDIALWDLAGKYLGLPVHRLLG---G-YREKIPA--YASTMVGDDLEGLESPE---------AYAD 149 (368)
T ss_pred -c---CcchhHHHHHHHHHHHHhhhhcCCcHHHHhh---c-cccceeE--EEecCCCcccccCCCHH---------HHHH
Confidence 1 1334699999999999999999999999999 6 4567765 44432221000000111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.++..+||+.+| .| ++. ....+++.+.++.||+++ | +++.|++|+ |+.|
T Consensus 150 ~a~~~~~~Gf~~~K----ik-------~~~----~~~~~~di~~i~~vR~~~---G--~~~~l~vDa--------n~~~- 200 (368)
T cd03329 150 FAEECKALGYRAIK----LH-------PWG----PGVVRRDLKACLAVREAV---G--PDMRLMHDG--------AHWY- 200 (368)
T ss_pred HHHHHHHcCCCEEE----Ee-------cCC----chhHHHHHHHHHHHHHHh---C--CCCeEEEEC--------CCCc-
Confidence 55556666787777 33 110 111233466677777766 3 489999999 5555
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccC-HHHHHHHHhcCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTN-PKRIAEAIQKKS 378 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~-~~~~~~~i~~~a 378 (394)
+.++++++. +.+++|++.|+|||++++|++++++|++++++||++||.. .+ +++++++++.++
T Consensus 201 --------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~-~~~~~~~~~~i~~~a 264 (368)
T cd03329 201 --------------SRADALRLG-RALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHS-RGALESRADWVLAGA 264 (368)
T ss_pred --------------CHHHHHHHH-HHhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcc-cCcHHHHHHHHHhCC
Confidence 567888754 4589999999999999999999999999999999999974 56 999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 265 ~d~v~~d~~~~GGit~ 280 (368)
T cd03329 265 TDFLRADVNLVGGITG 280 (368)
T ss_pred CCEEecCccccCCHHH
Confidence 9999999999999984
No 25
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.3e-35 Score=295.28 Aligned_cols=267 Identities=15% Similarity=0.202 Sum_probs=177.3
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH----HHHHHHhHHhHhhhhcCCCCCCHHHHHHHH
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV----LNAVKNINDILGPKLVGVDIRDQAEVDAIM 134 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~----~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l 134 (394)
...|.|+|+|| |++ ||||+....- +.+.+++. ..+...|++.|+|.|+|+||.+++++|+.|
T Consensus 12 ~~~vlV~I~tddG~~----------G~GEa~~~~~---~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m 78 (369)
T cd03314 12 GEAISVMLVLEDGQV----------AVGDCAAVQY---SGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVL 78 (369)
T ss_pred CcEEEEEEEECCCCE----------EEEecccccc---cCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHH
Confidence 35799999999 986 9999742100 00122222 334567888999999999999999999999
Q ss_pred HHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhccc--CCcccccceeeEEeecCCcCCCCCCcccceeecc
Q 016156 135 LEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELS--GTKELVMPVPAFNVINGGSHAGNNLAMQEFMILP 212 (394)
Q Consensus 135 ~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~--g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p 212 (394)
++.. ..++.....|++|||+||||+.||.+|+|||+|||+.. |..++++| +|.+++ +. . ..+
T Consensus 79 ~~~~--~~g~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~--~y~~~~-~~-~-----~~~----- 142 (369)
T cd03314 79 DKMR--LDGNRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVP--IFAQSG-DD-R-----YIN----- 142 (369)
T ss_pred HHHh--hcCCcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceE--EEEEec-Cc-c-----ccc-----
Confidence 7632 11112334578999999999999999999999998311 22345554 565432 10 0 000
Q ss_pred CCCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccc
Q 016156 213 VGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEF 291 (394)
Q Consensus 213 ~~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~ 291 (394)
.....+++.++..++ |+.+| .| |....++- .. ....++.++. ++..| +++.|++|+
T Consensus 143 -~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~---~~~~~~~v~a-vr~~G--~~~~l~vDa----- 199 (369)
T cd03314 143 -VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EY---VKWLSDRIRK-LGRPG--YHPILHIDV----- 199 (369)
T ss_pred -HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------Hh---HHHHHHHHHH-HhhcC--CCCEEEEEc-----
Confidence 011233333343333 55555 23 32111110 11 1222333322 22334 489999999
Q ss_pred cccCCeeeccCCCCCCCCCccc--CHHHHHHHHHHhhhcC-C--ceeeeCCCCCCC----HHHHHHHHhhc-----CCeE
Q 016156 292 FTKDGNYDLNFKKQPNDGAHVL--SAQSLGDLYKEFVRDF-P--IVSIEDPFDQDD----WSSWASLQSSV-----DIQL 357 (394)
Q Consensus 292 ~~~ng~Y~~~~~~~~~~~~~~~--t~~e~i~~~~~~l~~~-~--i~~iEdPl~~~D----~~~~~~L~~~~-----~i~I 357 (394)
|+.| .+.| |+++++++... ++++ + +.|||||++++| +++|++|++++ ++||
T Consensus 200 ---N~~w-----------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPI 264 (369)
T cd03314 200 ---YGTI-----------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRI 264 (369)
T ss_pred ---CCcc-----------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 4432 1245 67899987655 6654 4 789999999966 89999999994 7999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||. ++++++++++++.++||++|+|++++||||+
T Consensus 265 a~dEs-~~t~~d~~~li~~~a~div~~kl~k~GGIt~ 300 (369)
T cd03314 265 VADEW-CNTLEDIRDFADAGAAHMVQIKTPDLGGIDN 300 (369)
T ss_pred EecCC-cCCHHHHHHHHHhCCCCEEEecchhcCCHHH
Confidence 99997 5689999999999999999999999999985
No 26
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.2e-36 Score=298.66 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=188.9
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |.+ |+||+.... .+.|.+++...+...+++.+.|.|+|+|+.+++++|+.|.+..+
T Consensus 25 ~~~~Vrv~t~~G~~----------G~GE~~~~~---~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~~ 91 (354)
T cd03317 25 EFLIVELTDEEGIT----------GYGEVVAFE---GPFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLAPIKG 91 (354)
T ss_pred eEEEEEEEECCCCe----------EEEecCCCC---CCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Confidence 4688999998 886 999974321 12466777777778888889999999999999999999976321
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
...|++|||+||||+.||.+|+|+|++|| | .++++|+ |.+++.+ +. .++..+
T Consensus 92 -------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g-~~~~v~~--~~s~~~~-------~~--------~~~~~~ 143 (354)
T cd03317 92 -------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---G-TRDSIPV--GVSIGIQ-------DD--------VEQLLK 143 (354)
T ss_pred -------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCeEEe--eEEEeCC-------Cc--------HHHHHH
Confidence 13599999999999999999999999999 6 4567765 4443211 00 022456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.+...+||+++| .|.| + +.+.++++.||+++ |++.|++|+ |+.|+
T Consensus 144 ~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDa--------N~~~~ 190 (354)
T cd03317 144 QIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADA--------NSAYT 190 (354)
T ss_pred HHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEEC--------CCCCC
Confidence 77777777888887 4422 1 12355666666654 689999999 66664
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
..++ .+ .+.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+++
T Consensus 191 ---------------~~~a-~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~~ 252 (354)
T cd03317 191 ---------------LADI-PL-LKRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDES-IQSAEDARKAIELGAC 252 (354)
T ss_pred ---------------HHHH-HH-HHHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCc-cCCHHHHHHHHHcCCC
Confidence 4454 34 4558999999999999999999999999999999999996 5789999999999999
Q ss_pred cEEeeccccccccCC
Q 016156 380 NGLLLKVNHLFEIKS 394 (394)
Q Consensus 380 d~i~ik~~~~Ggit~ 394 (394)
|++|+|++++||||+
T Consensus 253 d~~~ik~~~~GGit~ 267 (354)
T cd03317 253 KIINIKPGRVGGLTE 267 (354)
T ss_pred CEEEecccccCCHHH
Confidence 999999999999974
No 27
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=1.8e-35 Score=291.39 Aligned_cols=241 Identities=17% Similarity=0.189 Sum_probs=186.7
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+..+.|+|+|+ |++ |+||+....- +.|.++....+...+++.++|.|+| ++.+++++++.|....
T Consensus 21 ~~~~lV~v~~~~G~~----------G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~ 86 (324)
T TIGR01928 21 RDCLIIELIDDKGNA----------GFGEVVAFQT---PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVRSLK 86 (324)
T ss_pred CcEEEEEEEECCCCe----------EEEeccccCC---CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcc
Confidence 46789999999 986 9999743210 2355666777777788889999999 9999999999986421
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
+ ...|++|||+||||+.||.+|+|||++|| | .++++|+ |.++ |.. + ++...
T Consensus 87 -----~--~~~a~said~AlwDl~gk~~g~Pl~~llG---g-~~~~i~~--y~~~--~~~-----~---------~~~~~ 137 (324)
T TIGR01928 87 -----G--TPMAKAGLEMALWDMYHKLPSFSLAYGQG---K-LRDKAPA--GAVS--GLA-----N---------DEQML 137 (324)
T ss_pred -----C--CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---C-CCCeEEE--eEEc--CCC-----C---------HHHHH
Confidence 1 12599999999999999999999999999 6 4567665 4442 210 1 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.+...+||+.+| .|.| + +.+.+.++.+|+++ +++.|++|+ |+.|
T Consensus 138 ~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDa--------N~~~ 184 (324)
T TIGR01928 138 KQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDA--------NESY 184 (324)
T ss_pred HHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEEC--------CCCC
Confidence 677777778898888 4422 1 12245566665554 689999999 5666
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCC
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
+ .+++ .+ .+.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.++
T Consensus 185 ~---------------~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 185 D---------------LQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDES-ITSLDDARNLIELGN 246 (324)
T ss_pred C---------------HHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCC-cCCHHHHHHHHHcCC
Confidence 4 4443 33 4668999999999999999999999999999999999996 678999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 247 ~dvi~~d~~~~GGit~ 262 (324)
T TIGR01928 247 VKVINIKPGRLGGLTE 262 (324)
T ss_pred CCEEEeCcchhcCHHH
Confidence 9999999999999974
No 28
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=2.3e-35 Score=300.56 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=187.2
Q ss_pred ceEEEEEEEEE-------ecCCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI-------IDSRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v-------~~~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
+.|+.++..+| ++..| ...+.|+|+|| |++ |+||+.. ++++ ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~----------G~GEa~~----------~~~~---~~~ 60 (441)
T TIGR03247 4 PVVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGNT----------GVGEVPG----------GEKI---RAT 60 (441)
T ss_pred CEEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCCe----------EEEeCCC----------cHHH---HHH
Confidence 45666666666 22222 35789999999 986 9998621 2222 233
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcC---CCCCCc------cchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDG---TPNKSK------IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~---~~~~~~------ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
++ .++|.|+|+||.++++||+.|+.... ..+.+. ....|++|||+||||++||.+|+|||+|||+ |..
T Consensus 61 l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGg--g~~ 137 (441)
T TIGR03247 61 LE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGE--GQQ 137 (441)
T ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCC--CCc
Confidence 54 69999999999999999999976210 111121 1346999999999999999999999999983 344
Q ss_pred ccccceeeEEeecCCcC-------CC------CCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCccc
Q 016156 182 ELVMPVPAFNVINGGSH-------AG------NNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNV 247 (394)
Q Consensus 182 ~~~iP~p~~~~i~gG~~-------~~------~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~v 247 (394)
++++|++.+.. +.|.. .. +-....+- ....++...+++.++..+ ||+++| .|.|
T Consensus 138 r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG------ 205 (441)
T TIGR03247 138 RDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHE-EALTPEAVVRLAEAAYDRYGFRDFK----LKGG------ 205 (441)
T ss_pred cceEEEeeeee-eccccccccccccccccccccccccccc-cCCCHHHHHHHHHHHHHhcCCCEEE----EecC------
Confidence 67777653221 11100 00 00000000 000112234566655544 888888 4533
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~ 327 (394)
. ++.+.+.++++++|+++ +++.|++|+ |+.| |.++++++..+ ++
T Consensus 206 -~-----~~~~~Di~~v~avRea~------~d~~L~vDA--------N~~w---------------t~~~Ai~~~~~-Le 249 (441)
T TIGR03247 206 -V-----LRGEEEIEAVTALAKRF------PQARITLDP--------NGAW---------------SLDEAIALCKD-LK 249 (441)
T ss_pred -C-----CChHHHHHHHHHHHHhC------CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-hh
Confidence 1 11223345555555543 689999999 5655 56788886544 78
Q ss_pred cCCceeeeCCCCCCC----HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 328 DFPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 328 ~~~i~~iEdPl~~~D----~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+| +.|||||++++| ++++++|++++++||++||. ++++++++++++.+++|++++|+. +||||+
T Consensus 250 ~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs-~~~~~~~~~li~~~avdi~~~d~~-~gGIt~ 317 (441)
T TIGR03247 250 GV-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMI-ATDWRQMGHALQLQAVDIPLADPH-FWTMQG 317 (441)
T ss_pred hh-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCc-cCCHHHHHHHHHhCCCCEEeccCC-cchHHH
Confidence 89 999999999999 99999999999999999996 578999999999999999999995 667874
No 29
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=2.8e-35 Score=293.52 Aligned_cols=270 Identities=18% Similarity=0.220 Sum_probs=196.4
Q ss_pred eEEEEEEEEEec--------CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhH
Q 016156 45 KVKSVKARQIID--------SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDIL 115 (394)
Q Consensus 45 ~I~~V~~r~v~~--------~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l 115 (394)
+|++|++..+-- ......+.|+|+|+ |++ |+||+.... . ...+...|++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~----------G~GE~~~~~-------~---~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGIT----------GWGEAYPGG-------R---PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCE----------EEEeccCCC-------C---chHHHHHHHHHH
Confidence 477777766621 11256899999999 886 999974311 1 234455677789
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecC
Q 016156 116 GPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVING 195 (394)
Q Consensus 116 ~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~g 195 (394)
+|.|+|+|+.+.+++|+.|.+.......++.-..|++|||+||||+.||.+|+|||++|| |..+.++|+ |.++++
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~--~~~~~~ 135 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRV--YASGGG 135 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceee--EEecCC
Confidence 999999999999999999986421111122335799999999999999999999999999 654567775 444322
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag 275 (394)
+. .+.+ ...+++.++..+||+.+| .|.| .........+.+.+.++.+|+++ |
T Consensus 136 ~~-----~~~~---------~~~~~a~~~~~~Gf~~~K----ik~g-------~~~~~~~~~~~d~~~v~~ir~~~---g 187 (357)
T cd03316 136 YD-----DSPE---------ELAEEAKRAVAEGFTAVK----LKVG-------GPDSGGEDLREDLARVRAVREAV---G 187 (357)
T ss_pred CC-----CCHH---------HHHHHHHHHHHcCCCEEE----EcCC-------CCCcchHHHHHHHHHHHHHHHhh---C
Confidence 10 0111 234566666667788887 4433 10000000222355666666665 3
Q ss_pred CCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCC
Q 016156 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDI 355 (394)
Q Consensus 276 ~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i 355 (394)
+++.|++|+ |+.| +.++++++. +.++++++.|||||++++|++++++|++++++
T Consensus 188 --~~~~l~vDa--------N~~~---------------~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~i 241 (357)
T cd03316 188 --PDVDLMVDA--------NGRW---------------DLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARLRQATSV 241 (357)
T ss_pred --CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHHHHhCCC
Confidence 489999999 5544 567888754 45899999999999999999999999999999
Q ss_pred eEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 356 ~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++||. +.++++++++++.+++|++|+|++++||+|+
T Consensus 242 pi~~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 242 PIAAGEN-LYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred CEEeccc-cccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 9999997 5779999999999999999999999999974
No 30
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.9e-35 Score=293.75 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=186.5
Q ss_pred eEEEEEEEEEec--------CC----CCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 45 KVKSVKARQIID--------SR----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 45 ~I~~V~~r~v~~--------~~----g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
+|++|++.++.- +. ..+.+.|+|+|| |++ |+||+. .+ ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~----------G~Ge~~----------~~---~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNT----------GVGESP----------GG---AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCe----------eccccC----------CC---HHHHHHH
Confidence 588888876621 11 146899999999 986 999852 11 1222234
Q ss_pred HHhHhhhhcCCCC-CCHHHHHHHHHHhcCCCCCC---------ccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 112 NDILGPKLVGVDI-RDQAEVDAIMLEIDGTPNKS---------KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 112 ~~~l~p~LiG~dp-~~~e~Id~~l~~~~~~~~~~---------~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
. .++|.|+|+++ .+.+.+|+.|.+.......+ ++...|++|||+||||+.||.+|+|||+||| |..
T Consensus 58 ~-~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---G~~ 133 (395)
T cd03323 58 L-EAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG---GGQ 133 (395)
T ss_pred H-HHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC---CCc
Confidence 3 47889999888 58889999998632111111 2346799999999999999999999999999 765
Q ss_pred ccccceeeEEeec--CCcCCCC-CCcccc--eeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCC
Q 016156 182 ELVMPVPAFNVIN--GGSHAGN-NLAMQE--FMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAP 255 (394)
Q Consensus 182 ~~~iP~p~~~~i~--gG~~~~~-~l~~~e--~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~ 255 (394)
++++|++ +++. ++.+..+ ..+... +...+..+...+++.++.. +||+++| .|.| . .
T Consensus 134 r~~v~~y--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG-------~-----~ 195 (395)
T cd03323 134 RDSVPFL--AYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGG-------V-----L 195 (395)
T ss_pred cCeEEEE--EEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecC-------C-----C
Confidence 6787764 4332 1101000 000000 0000111223445555553 3788887 4433 1 1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee
Q 016156 256 NVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335 (394)
Q Consensus 256 ~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE 335 (394)
+.+.+.++++++|+++ +++.|++|+ |+.| +.++++++.. .+++ ++.|||
T Consensus 196 ~~~~di~~v~avRea~------~~~~l~vDa--------N~~w---------------~~~~A~~~~~-~l~~-~l~~iE 244 (395)
T cd03323 196 PGEEEIEAVKALAEAF------PGARLRLDP--------NGAW---------------SLETAIRLAK-ELEG-VLAYLE 244 (395)
T ss_pred CHHHHHHHHHHHHHhC------CCCcEEEeC--------CCCc---------------CHHHHHHHHH-hcCc-CCCEEE
Confidence 2223345566666554 689999999 5555 5678887644 5888 999999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 336 dPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++ |++++++|++++++||++||. +++.++++++++.+++|++|+|++++||||+
T Consensus 245 eP~~--d~~~~~~L~~~~~~PIa~dEs-~~~~~~~~~~i~~~avdil~~d~~~~GGit~ 300 (395)
T cd03323 245 DPCG--GREGMAEFRRATGLPLATNMI-VTDFRQLGHAIQLNAVDIPLADHHFWGGMRG 300 (395)
T ss_pred CCCC--CHHHHHHHHHhcCCCEEcCCc-ccCHHHHHHHHHcCCCcEEeeccccccCHHH
Confidence 9998 999999999999999999997 5679999999999999999999999999984
No 31
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=1.3e-33 Score=283.84 Aligned_cols=263 Identities=18% Similarity=0.255 Sum_probs=187.9
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchh-------HHHHHHHhHHhHhhhhcCCCCCCHHHHHH
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKG-------VLNAVKNINDILGPKLVGVDIRDQAEVDA 132 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~-------~~~a~~~I~~~l~p~LiG~dp~~~e~Id~ 132 (394)
..|.|+|+|+ |.+ ||||+.. +.|.+++ ...+...|++.|+|.|+|+|+.+.+++++
T Consensus 50 ~~vlV~i~tddG~~----------G~GE~~~------~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQV----------VHGDCAA------VQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCCE----------EEEEeec------ceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 4799999999 986 9999753 1355543 66677788999999999999999999999
Q ss_pred HHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC--CcccccceeeEEeecCCcCCCCCCcccceee
Q 016156 133 IMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210 (394)
Q Consensus 133 ~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g--~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i 210 (394)
.|.... .+.+ +-..+++|||+||||+.||.+|+|||++||+..| ..++++| +|.+++. .+.. +.
T Consensus 114 ~~~~~~--~~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp--~~~s~g~-~~~~---~~----- 179 (408)
T TIGR01502 114 VFEKMT--VNRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVP--VFAQSGD-DRYD---NV----- 179 (408)
T ss_pred HHHHHh--hcCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCcee--EEEEeec-cCCC---CH-----
Confidence 998742 1112 3345679999999999999999999999983111 2344555 4554321 0000 01
Q ss_pred ccCCCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC-CcEEEEeccc
Q 016156 211 LPVGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAA 288 (394)
Q Consensus 211 ~p~~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa 288 (394)
+..+.++.++..+| |+.+|+ .| . +...+.+.++.+++.++.++..| ++.|++|+
T Consensus 180 ----d~m~~~a~~~~~~G~~~~~Kk-----vG-------~------~~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDa-- 235 (408)
T TIGR01502 180 ----DKMILKEVDVLPHGLINSVEE-----LG-------L------DGEKLLEYVKWLRDRIIKLGREGYAPIFHIDV-- 235 (408)
T ss_pred ----HHHHHHHHHHHhccCccceee-----ec-------C------CHHHhhhhHHHHHHHHHHhhccCCCCeEEEEc--
Confidence 22355666676665 777761 23 1 11112344555556655444113 78999999
Q ss_pred ccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh---cCCceeeeCCCCCCC----HHHHHHHHhh-----cCCe
Q 016156 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR---DFPIVSIEDPFDQDD----WSSWASLQSS-----VDIQ 356 (394)
Q Consensus 289 ~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~---~~~i~~iEdPl~~~D----~~~~~~L~~~-----~~i~ 356 (394)
||+--. -..||++++++++.++-+ +|++ |||||++++| +++|++|+++ +++|
T Consensus 236 ------N~~~~~---------~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vP 299 (408)
T TIGR01502 236 ------YGTIGE---------AFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAE 299 (408)
T ss_pred ------CCCccc---------ccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCce
Confidence 441110 124578899998777433 4887 9999999866 9999999998 4799
Q ss_pred EEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 357 I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++||. ++++++++++++.++||++|+|++++||||+
T Consensus 300 I~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~ 336 (408)
T TIGR01502 300 IVADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNN 336 (408)
T ss_pred EEecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 999997 6789999999999999999999999999984
No 32
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=100.00 E-value=8.7e-34 Score=242.71 Aligned_cols=130 Identities=61% Similarity=0.985 Sum_probs=114.2
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|+|+++..++++||+.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999 855 9999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHh
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lL 174 (394)
||.||++||+.|.++|+|.+++.+|.|++.|+|+|++.++|+.+++|||+||
T Consensus 81 ~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 33
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5e-33 Score=273.12 Aligned_cols=242 Identities=19% Similarity=0.255 Sum_probs=181.5
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
..+.|+|+|+|++ |+||+.... .|.++....+...+++ ++|.|+|+||. .+++|+.|....
T Consensus 26 ~~~~v~v~t~G~~----------G~GE~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~-- 86 (316)
T cd03319 26 ENVIVEIELDGIT----------GYGEAAPTP-----RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELL-- 86 (316)
T ss_pred eEEEEEEEECCEE----------EEEeecCCC-----CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhc--
Confidence 4688999998665 999975422 2345555666666665 59999999999 999999997631
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
.+ ...|++|||+||||+.||.+|+|+|++|| |..++++|++ ..+.++ +.++ ..++
T Consensus 87 ~~----~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~~--~~~~~~-------~~~~---------~~~~ 141 (316)
T cd03319 87 PG----NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLETD--YTISID-------TPEA---------MAAA 141 (316)
T ss_pred cC----ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCceeE--EEEeCC-------CHHH---------HHHH
Confidence 11 23599999999999999999999999976 4456677763 323221 1111 2445
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.++..+||+.+| .|.| . +.+.+.+.++.+|+++ |++.|++|+ |+.|
T Consensus 142 ~~~~~~~Gf~~iK----ik~g-------~------~~~~d~~~v~~lr~~~------g~~~l~vD~--------n~~~-- 188 (316)
T cd03319 142 AKKAAKRGFPLLK----IKLG-------G------DLEDDIERIRAIREAA------PDARLRVDA--------NQGW-- 188 (316)
T ss_pred HHHHHHcCCCEEE----EEeC-------C------ChhhHHHHHHHHHHhC------CCCeEEEeC--------CCCc--
Confidence 5556666788887 4533 1 1123344555555444 478999999 4544
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+.++++++. +.++++++.|||||++++|++++++|++++++||++||. +.++++++++++.+++|
T Consensus 189 -------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~-~~~~~~~~~~~~~~~~d 253 (316)
T cd03319 189 -------------TPEEAVELL-RELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADES-CFSAADAARLAGGGAYD 253 (316)
T ss_pred -------------CHHHHHHHH-HHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCC-CCCHHHHHHHHhcCCCC
Confidence 457888754 558999999999999999999999999999999999996 57899999999999999
Q ss_pred EEeeccccccccCC
Q 016156 381 GLLLKVNHLFEIKS 394 (394)
Q Consensus 381 ~i~ik~~~~Ggit~ 394 (394)
++|+|++++||+|+
T Consensus 254 ~v~~~~~~~GGi~~ 267 (316)
T cd03319 254 GINIKLMKTGGLTE 267 (316)
T ss_pred EEEEeccccCCHHH
Confidence 99999999999974
No 34
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=99.97 E-value=1.5e-29 Score=249.15 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=166.4
Q ss_pred CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 60 ~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
+.++.|+|+++|.+ |+||+.++. .| +++...+...++ .+.|.|+ . ..+.+.+++.+ +
T Consensus 27 ~~~~lv~l~~~G~~----------G~GE~~p~~-----~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~~~----~ 83 (321)
T PRK15129 27 ARVVVVELEEEGIK----------GTGECTPYP-----RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQKLL----P 83 (321)
T ss_pred eeEEEEEEEeCCeE----------EEEeeCCcC-----CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHhhc----c
Confidence 45789999844875 999985432 34 466777776664 5889997 2 22333333321 1
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
+ ..|++|||+||||+.||..|+|||++|| |..++++|+ +.+++-+ + +....+
T Consensus 84 --~-----~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~--~~~~~~~-------~---------~~~~~~ 135 (321)
T PRK15129 84 --A-----GAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTT--AQTVVIG-------T---------PEQMAN 135 (321)
T ss_pred --C-----hHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeE--EEEecCC-------C---------HHHHHH
Confidence 1 2699999999999999999999999999 655667765 3333211 1 122356
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.+...+||+++| .| ++ ++ .+.++++.+|+++ +++.|++|+ |+.|
T Consensus 136 ~~~~~~~~G~~~~K----lK-------v~------~~--~d~~~v~avr~~~------~~~~l~vDa--------N~~w- 181 (321)
T PRK15129 136 SASALWQAGAKLLK----VK-------LD------NH--LISERMVAIRSAV------PDATLIVDA--------NESW- 181 (321)
T ss_pred HHHHHHHcCCCEEE----Ee-------CC------Cc--hHHHHHHHHHHhC------CCCeEEEEC--------CCCC-
Confidence 66666677888887 44 22 11 1345676766665 689999999 5655
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
|.++++++. +.++++++.|||||++++|++++++++ .++||+.||. +.+++++++++ +++
T Consensus 182 --------------~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~l~~~~--~~~pia~dEs-~~~~~d~~~~~--~~~ 241 (321)
T PRK15129 182 --------------RAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI--HPLPICADES-CHTRSSLKALK--GRY 241 (321)
T ss_pred --------------CHHHHHHHH-HHHHhcCceEEECCCCCCcHHHHHHhc--cCCCEecCCC-CCCHHHHHHHH--hhC
Confidence 466777754 448999999999999999999998775 4799999997 56799999984 799
Q ss_pred cEEeeccccccccCC
Q 016156 380 NGLLLKVNHLFEIKS 394 (394)
Q Consensus 380 d~i~ik~~~~Ggit~ 394 (394)
|++++|++++||||+
T Consensus 242 d~v~~k~~~~GGi~~ 256 (321)
T PRK15129 242 EMVNIKLDKTGGLTE 256 (321)
T ss_pred CEEEeCchhhCCHHH
Confidence 999999999999974
No 35
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=99.96 E-value=7.4e-29 Score=237.77 Aligned_cols=175 Identities=17% Similarity=0.255 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHH
Q 016156 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (394)
Q Consensus 151 ~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~ 230 (394)
++|||+||||+.||.+|+|+|++|| | .++++|+ |.+++.+ +.+ ...+++.+...+||+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG---~-~~~~i~~--~~~~~~~-------~~~---------~~~~~~~~~~~~G~~ 102 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLG---G-YRDRVRV--AHMLGLG-------EPA---------EVAEEARRALEAGFR 102 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcC---C-CCCceEE--EEEecCC-------CHH---------HHHHHHHHHHHCCCC
Confidence 7999999999999999999999999 5 4567766 4433221 111 234566666667788
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCC
Q 016156 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (394)
Q Consensus 231 ~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~ 310 (394)
.+| .|.| . .+ +.+.+.++.||+++ | +++.|++|+ |+.|
T Consensus 103 ~~K----iKvg-------~----~~--~~d~~~v~~vr~~~---g--~~~~l~vDa--------n~~~------------ 140 (265)
T cd03315 103 TFK----LKVG-------R----DP--ARDVAVVAALREAV---G--DDAELRVDA--------NRGW------------ 140 (265)
T ss_pred EEE----EecC-------C----CH--HHHHHHHHHHHHhc---C--CCCEEEEeC--------CCCc------------
Confidence 787 4432 1 11 23345566666555 3 489999999 5544
Q ss_pred cccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccc
Q 016156 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLF 390 (394)
Q Consensus 311 ~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~G 390 (394)
+.++++++. +.++++++.|||||++++|++++++|++++++||++||. +.++++++++++.+++|++++|++++|
T Consensus 141 ---~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~G 215 (265)
T cd03315 141 ---TPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADES-AFTPHDAFRELALGAADAVNIKTAKTG 215 (265)
T ss_pred ---CHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCC-CCCHHHHHHHHHhCCCCEEEEeccccc
Confidence 567888764 458899999999999999999999999999999999997 567999999999999999999999999
Q ss_pred ccCC
Q 016156 391 EIKS 394 (394)
Q Consensus 391 git~ 394 (394)
|||+
T Consensus 216 Gi~~ 219 (265)
T cd03315 216 GLTK 219 (265)
T ss_pred CHHH
Confidence 9974
No 36
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=99.95 E-value=2.7e-27 Score=222.21 Aligned_cols=141 Identities=23% Similarity=0.384 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHH
Q 016156 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (394)
Q Consensus 151 ~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~ 230 (394)
++|||+||||+.||.+|+|||++|| |..++++|++ . +
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~~--~-------------------------~------------- 80 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLG---GGSRDRVPAY--G-------------------------S------------- 80 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceecc--H-------------------------H-------------
Confidence 8999999999999999999999999 7656666652 1 0
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCC
Q 016156 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (394)
Q Consensus 231 ~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~ 310 (394)
+ +.++.+|+++ | +++.|++|+ |+.|
T Consensus 81 -~-----------------------------~~i~~lr~~~---g--~~~~l~lDa--------N~~~------------ 105 (229)
T cd00308 81 -I-----------------------------ERVRAVREAF---G--PDARLAVDA--------NGAW------------ 105 (229)
T ss_pred -H-----------------------------HHHHHHHHHh---C--CCCeEEEEC--------CCCC------------
Confidence 1 1345567766 2 489999999 5655
Q ss_pred cccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccc
Q 016156 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLF 390 (394)
Q Consensus 311 ~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~G 390 (394)
+.+++++++.+ ++++++.|||||++++|+++|++|++++++||++||. +.++++++++++.+++|++|+|++++|
T Consensus 106 ---~~~~a~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs-~~~~~~~~~~~~~~~~d~~~~k~~~~G 180 (229)
T cd00308 106 ---TPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADES-VTTVDDALEALELGAVDILQIKPTRVG 180 (229)
T ss_pred ---CHHHHHHHHHH-hhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEecCccccC
Confidence 46788886554 8889999999999999999999999999999999996 577999999999999999999999999
Q ss_pred ccCC
Q 016156 391 EIKS 394 (394)
Q Consensus 391 git~ 394 (394)
|+|+
T Consensus 181 Gi~~ 184 (229)
T cd00308 181 GLTE 184 (229)
T ss_pred CHHH
Confidence 9974
No 37
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.94 E-value=2.9e-27 Score=226.65 Aligned_cols=168 Identities=19% Similarity=0.228 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHH
Q 016156 150 AILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY 229 (394)
Q Consensus 150 A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~ 229 (394)
|++|||+||||+.||.+| | |..++++|+ |.+++.+ +. ...+++.++..+||
T Consensus 48 a~aaid~AlwDl~gk~~g-------g---g~~~~~v~~--~~~~~~~-------~~----------~~~~~~~~~~~~Gf 98 (263)
T cd03320 48 LAFGIESALANLEALLVG-------F---TRPRNRIPV--NALLPAG-------DA----------AALGEAKAAYGGGY 98 (263)
T ss_pred HHHHHHHHHhcccccccC-------C---CCCccCcce--eEEecCC-------CH----------HHHHHHHHHHhCCC
Confidence 799999999999999999 6 655667766 4444321 00 12355666666788
Q ss_pred HHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCC
Q 016156 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDG 309 (394)
Q Consensus 230 ~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~ 309 (394)
+.+| .|.| ..+.+++.+.++.+|+++ | +++.|++|+ |+.|
T Consensus 99 ~~~K----iKvg------------~~~~~~d~~~v~~vr~~~---g--~~~~l~vDa--------N~~w----------- 138 (263)
T cd03320 99 RTVK----LKVG------------ATSFEEDLARLRALREAL---P--ADAKLRLDA--------NGGW----------- 138 (263)
T ss_pred CEEE----EEEC------------CCChHHHHHHHHHHHHHc---C--CCCeEEEeC--------CCCC-----------
Confidence 8888 4533 112233345566665554 3 489999999 5655
Q ss_pred CcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccc
Q 016156 310 AHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389 (394)
Q Consensus 310 ~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~ 389 (394)
+.++++++. +.+++|++.|||||++++|++++++|+ +++||++||. +.++++++++++.+++|++++|++++
T Consensus 139 ----~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs-~~~~~~~~~~~~~~~~d~v~~k~~~~ 210 (263)
T cd03320 139 ----SLEEALAFL-EALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDES-LRRLDDPLALAAAGALGALVLKPALL 210 (263)
T ss_pred ----CHHHHHHHH-HhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCc-cccccCHHHHHhcCCCCEEEECchhc
Confidence 467888754 458999999999999999999999999 7899999997 56799999999999999999999999
Q ss_pred cccCC
Q 016156 390 FEIKS 394 (394)
Q Consensus 390 Ggit~ 394 (394)
||||+
T Consensus 211 GGit~ 215 (263)
T cd03320 211 GGPRA 215 (263)
T ss_pred CCHHH
Confidence 99974
No 38
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=99.93 E-value=1.9e-25 Score=219.76 Aligned_cols=224 Identities=13% Similarity=0.149 Sum_probs=157.2
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+.++.|+|+++ |++ |+||+.+. |.|.+++.+.+...++ .+.|.|.+++ .+.+ ...+
T Consensus 28 ~~~~iV~l~~~~G~~----------G~GE~~p~-----p~~~~et~~~~~~~l~-~l~~~l~~~~---~~~~---~~~~- 84 (320)
T PRK02714 28 REGIILRLTDETGKI----------GWGEIAPL-----PWFGSETLEEALAFCQ-QLPGEITPEQ---IFSI---PDAL- 84 (320)
T ss_pred eEEEEEEEEeCCCCe----------EEEEecCC-----CCCCcccHHHHHHHHH-hccccCCHHH---HHhh---hhcC-
Confidence 46899999999 886 99998543 3688888888877665 4777775432 2222 1111
Q ss_pred CCCCCCccchhhHHHHHHHHHH-HhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCC
Q 016156 139 GTPNKSKIGANAILGVSLSVCR-AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATS 217 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwd-a~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~ 217 (394)
..+++|+|+| || +.++.. + . . ..++|.+..++. ....
T Consensus 85 ---------~~~~~aie~A-~d~~~~~~~--------~---~-~--~~~~~~~~~i~~------------------~~~~ 122 (320)
T PRK02714 85 ---------PACQFGFESA-LENESGSRS--------N---V-T--LNPLSYSALLPA------------------GEAA 122 (320)
T ss_pred ---------CHHHHHHHHH-HHHHhcccc--------c---C-C--cCCCceeeecCC------------------CHHH
Confidence 1579999999 66 433321 1 1 1 123443433321 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 218 ~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
.+++.++..+||+.+| .|.| . .+.+.+.++++.+|+++ | +++.|++|+ |+.
T Consensus 123 ~~~a~~~~~~G~~~~K----vKvG-------~-----~~~~~d~~~v~air~~~---g--~~~~l~vDa--------N~~ 173 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK----WKIG-------V-----DPLEQELKIFEQLLERL---P--AGAKLRLDA--------NGG 173 (320)
T ss_pred HHHHHHHHHcCCCEEE----EEEC-------C-----CChHHHHHHHHHHHHhc---C--CCCEEEEEC--------CCC
Confidence 5677777777888888 4533 1 12222345555555554 3 489999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHH
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i 374 (394)
| +.++++++.. .+++ |++.|||||++++|++++++|++++++||++||+ +.+++++++++
T Consensus 174 w---------------~~~~A~~~~~-~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~DEs-~~~~~d~~~~~ 236 (320)
T PRK02714 174 L---------------SLEEAKRWLQ-LCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALDES-VANLAQLQQCY 236 (320)
T ss_pred C---------------CHHHHHHHHH-HHhhccCCCccEEECCCCcccHHHHHHHHHhCCCCEEECCc-cCCHHHHHHHH
Confidence 5 4667777544 4666 8999999999999999999999999999999997 57899999999
Q ss_pred hcCCCcEEeeccccccccCC
Q 016156 375 QKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 375 ~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.+++|++++|++++||+|+
T Consensus 237 ~~~a~d~v~ik~~k~GGi~~ 256 (320)
T PRK02714 237 QQGWRGIFVIKPAIAGSPSR 256 (320)
T ss_pred HcCCCCEEEEcchhcCCHHH
Confidence 99999999999999999863
No 39
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=99.93 E-value=1.5e-25 Score=219.35 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=157.3
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
.++.|+|+++|.+ |+||+..+ +.|.+++...+...+++ +.|.|+|+++.++.+. .
T Consensus 22 ~~~iv~l~~~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~-l~~~l~~~~~~~~~~~---------~ 76 (307)
T TIGR01927 22 EGLIVRLTDEGRT----------GWGEIAPL-----PGFGTETLAEALDFCRA-LIEEITRGDIEAIDDQ---------L 76 (307)
T ss_pred eEEEEEEEECCcE----------EEEEeecC-----CCCCcccHHHHHHHHHH-HHHHhcccchhhcccc---------C
Confidence 5799999944876 99998653 35788899998888874 8899999987643210 0
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
..+++|||+||||+.||. ++| .....|. ++ ++.| +. +...++
T Consensus 77 -------~~~~~aie~Al~Dl~~k~-~~~-----------~~~~~~~--~~-l~~~-------~~---------~~~~~~ 118 (307)
T TIGR01927 77 -------PSVAFGFESALIELESGD-ELP-----------PASNYYV--AL-LPAG-------DP---------ALLLLR 118 (307)
T ss_pred -------cHHHHHHHHHHHHHhcCC-CCC-----------cccccce--ee-ccCC-------CH---------HHHHHH
Confidence 257999999999999998 111 1112222 22 2111 01 112233
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.+ .+||+.+| .|.| . .+.+.+.+.++.||+++ | +++.|++|+ |+.|
T Consensus 119 ~~~--~~Gf~~~K----iKvG-------~-----~~~~~d~~~v~~vr~~~---g--~~~~l~vDa--------N~~w-- 165 (307)
T TIGR01927 119 SAK--AEGFRTFK----WKVG-------V-----GELAREGMLVNLLLEAL---P--DKAELRLDA--------NGGL-- 165 (307)
T ss_pred HHH--hCCCCEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---C--CCCeEEEeC--------CCCC--
Confidence 333 56787777 4533 1 12223345566665554 3 479999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
|.++++++.. .+++ +++.|||||++.+ +++++|++++++||++||. +.++++++++++.+
T Consensus 166 -------------~~~~A~~~~~-~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs-~~~~~d~~~~~~~~ 228 (307)
T TIGR01927 166 -------------SPDEAQQFLK-ALDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDES-LWELPQLADEYGPG 228 (307)
T ss_pred -------------CHHHHHHHHH-hcccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCC-cCChHHHHHHHhcC
Confidence 5678887654 4787 8999999999776 9999999999999999997 46799999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++++|++++||+|+
T Consensus 229 ~~d~i~ik~~~~GGi~~ 245 (307)
T TIGR01927 229 WRGALVIKPAIIGSPAK 245 (307)
T ss_pred CCceEEECchhcCCHHH
Confidence 99999999999999974
No 40
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.93 E-value=5.7e-25 Score=254.57 Aligned_cols=259 Identities=13% Similarity=0.136 Sum_probs=172.7
Q ss_pred ceEEEEEEEEEe--------cCCC------CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH---H
Q 016156 44 AKVKSVKARQII--------DSRG------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV---L 105 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g------~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~---~ 105 (394)
|+|++|+.+.+- .+.| +..+.|+|+++ |.+ |+||+..+. +.+++. .
T Consensus 931 ~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~----------G~GEa~pl~------~~~et~~~~~ 994 (1655)
T PLN02980 931 CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSV----------GFGEVAPLE------IHEEDLLDVE 994 (1655)
T ss_pred ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCE----------EEEecCCCC------CCccccccHH
Confidence 999999999881 1222 46799999999 876 888875431 112221 1
Q ss_pred HHH----HHh----HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcc
Q 016156 106 NAV----KNI----NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQEL 177 (394)
Q Consensus 106 ~a~----~~I----~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~ 177 (394)
..+ ..+ .+.++|.|+|+++ +.+|+.|.... +.....|++|||+||||+.||.+|+|||++||
T Consensus 995 ~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~~~-----~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG-- 1064 (1655)
T PLN02980 995 EQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGIPP-----SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD-- 1064 (1655)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 111 112 1356899999954 44566663211 11234799999999999999999999999998
Q ss_pred cCCcc--------cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 016156 178 SGTKE--------LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGD 249 (394)
Q Consensus 178 ~g~~~--------~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~ 249 (394)
|... .++|+ +..+ ++. + + .....+++.+...+||+.+| .|.| .
T Consensus 1065 -g~~~~~~~~~~~~~v~v--~~~~-~~~--~---~---------~~~~~~~a~~~~~~Gf~~~K----lKvG-------~ 1115 (1655)
T PLN02980 1065 -PYQKDENGSEQSHSVQI--CALL-DSN--G---S---------PLEVAYVARKLVEEGFSAIK----LKVG-------R 1115 (1655)
T ss_pred -CCCCCcceeccccceee--eecc-CCC--C---C---------HHHHHHHHHHHHHcCCCEEE----EecC-------C
Confidence 4211 12332 2221 110 0 1 12235566666677888887 4533 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC
Q 016156 250 EGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF 329 (394)
Q Consensus 250 ~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~ 329 (394)
..+.+.+.++++.||+++ | +++.|++|+ |+.| |.++++++.. .++++
T Consensus 1116 ----~~~~~~D~~~i~alRe~~---G--~~~~LrlDA--------N~~w---------------s~~~A~~~~~-~L~~~ 1162 (1655)
T PLN02980 1116 ----RVSPIQDAAVIQEVRKAV---G--YQIELRADA--------NRNW---------------TYEEAIEFGS-LVKSC 1162 (1655)
T ss_pred ----CCCHHHHHHHHHHHHHHc---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHhhc
Confidence 012222344555555554 3 489999999 5655 5678888654 48899
Q ss_pred CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHH-----HHHHHHhcCCCcEEeeccccccccCC
Q 016156 330 PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPK-----RIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 330 ~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~-----~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|.|||||++ +.+++++|++++++||++||.. .+.+ .+++.++.+++ .+++|++++||||+
T Consensus 1163 ~i~~iEqPl~--~~~~l~~l~~~~~iPIA~DEs~-~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~ 1228 (1655)
T PLN02980 1163 NLKYIEEPVQ--DEDDLIKFCEETGLPVALDETI-DKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFEN 1228 (1655)
T ss_pred CCCEEECCCC--CHHHHHHHHHhCCCCEEeCCCc-CCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHH
Confidence 9999999997 5799999999999999999974 4443 47777777655 78999999999974
No 41
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.88 E-value=1.8e-22 Score=198.87 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=151.3
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+.++.|+|+ + |++ |+||+..+ +.|.+++..++...+.+.+.|.+. .++.+.. .
T Consensus 27 ~~~viV~l~-d~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~~~~~~~~-~~~~~~~-------~-- 80 (322)
T PRK05105 27 RDGLVVQLR-EGERE----------GWGEIAPL-----PGFSQETLEEAQEALLAWLNNWLA-GDCDDEL-------S-- 80 (322)
T ss_pred eeeEEEEEE-ECCcE----------EEEEeCCC-----CCCCccCHHHHHHHHHHHHHHhhc-Ccccccc-------c--
Confidence 467999996 7 876 99998553 358899999998889888888655 4443411 1
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.-..+..++++|+||+.||..+.|+|. .+++ +.| +. +...
T Consensus 81 -------~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~---------~~~~ 120 (322)
T PRK05105 81 -------QYPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP---------DELI 120 (322)
T ss_pred -------cCcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH---------HHHH
Confidence 112688999999999999988888752 1111 111 11 1134
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.++ +||+.+| .|.| . .+.+++.+.++.||+++ +++.|++|+ |+.|
T Consensus 121 ~~a~~~--~Gf~~~K----vKvG-------~-----~~~~~d~~~i~~vr~~~------~~~~l~vDa--------N~~w 168 (322)
T PRK05105 121 LKLADM--PGEKVAK----VKVG-------L-----YEAVRDGMLVNLLLEAI------PDLKLRLDA--------NRGW 168 (322)
T ss_pred HHHHHc--CCCCEEE----EEEC-------C-----CCHHHHHHHHHHHHHhC------CCCeEEEEC--------CCCC
Confidence 455554 6788887 4533 1 12222344555555443 689999999 5655
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
|.++++++..+ +++ +++.|||||++. .+.+++|++++++||+.||.. .++. ++..+
T Consensus 169 ---------------~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~~PIa~DEs~-~~~~-~~~~~- 227 (322)
T PRK05105 169 ---------------TLEKAQQFAKY-VPPDYRHRIAFLEEPCKT--PDDSRAFARATGIAIAWDESL-REPD-FQFEA- 227 (322)
T ss_pred ---------------CHHHHHHHHHH-hhhhcCCCccEEECCCCC--HHHHHHHHHhCCCCEEECCCC-Cchh-hhhhh-
Confidence 56788886554 787 999999999964 678999999999999999975 4564 55445
Q ss_pred cCCCcEEeeccccccccCC
Q 016156 376 KKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit~ 394 (394)
.+++|++++|++++||||+
T Consensus 228 ~~~~d~i~ik~~k~GGi~~ 246 (322)
T PRK05105 228 EPGVRAIVIKPTLTGSLEK 246 (322)
T ss_pred cCCCCEEEECccccCCHHH
Confidence 7789999999999999974
No 42
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.64 E-value=3.1e-15 Score=126.06 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=79.5
Q ss_pred EEecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCH
Q 016156 53 QIIDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQ 127 (394)
Q Consensus 53 ~v~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~ 127 (394)
++..+.+ ++.+.|+|+|+ |.+ |+||+... .+ ........+.+.+.|.|+|+++.+.
T Consensus 15 Pf~~a~~t~~~~~~v~V~l~t~~G~~----------G~Ge~~~~--------~~-~~~~~~~~~~~~l~~~l~g~~~~~~ 75 (117)
T PF02746_consen 15 PFKTARGTVSEREFVLVRLETDDGVV----------GWGEAFPS--------PG-TAETVASALEDYLAPLLIGQDPDDI 75 (117)
T ss_dssp EEEETTEEEEEEEEEEEEEEETTSEE----------EEEEEESS--------SS-SHHHHHHHHHHTHHHHHTTSBTTGH
T ss_pred CEEeeCEEEEEeEEEEEEEEECCCCE----------EEEEeeCC--------cc-hhHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4545554 46899999999 987 99998542 11 3456666788889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 128 AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 128 e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+++|+.+.+.. .+ ...|++|||+||||+.||.+|+|||+|||
T Consensus 76 ~~~~~~~~~~~-~~-----~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 76 EDIWQELYRLI-KG-----NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHHT-SS-----HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHHhc-cc-----hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999997642 11 35799999999999999999999999997
No 43
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.63 E-value=6.9e-16 Score=152.05 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh-hcCCceeeeC
Q 016156 258 QDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV-RDFPIVSIED 336 (394)
Q Consensus 258 ~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l-~~~~i~~iEd 336 (394)
+++.+.++.||+++ | +++.|++|+ |+.| |.++++++... + ++++|.||||
T Consensus 118 ~~Di~rv~avRe~l---G--pd~~LrvDA--------N~~w---------------s~~~Ai~~~~~-L~e~~~l~~iEq 168 (327)
T PRK02901 118 ADDVARVNAVRDAL---G--PDGRVRVDA--------NGGW---------------SVDEAVAAARA-LDADGPLEYVEQ 168 (327)
T ss_pred HHHHHHHHHHHHhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHHH-hhhccCceEEec
Confidence 33455566666555 3 489999999 5655 56788886555 6 6799999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 337 PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 337 Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++. ++++++|++++++||++||+ +++.+++.++++.+++|++++|++++||||+
T Consensus 169 P~~~--~~~la~Lr~~~~vPIA~DEs-~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~ 223 (327)
T PRK02901 169 PCAT--VEELAELRRRVGVPIAADES-IRRAEDPLRVARAGAADVAVLKVAPLGGVRA 223 (327)
T ss_pred CCCC--HHHHHHHHHhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCcchhCCHHH
Confidence 9974 99999999999999999996 5679999999999999999999999999974
No 44
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.30 E-value=1.6e-11 Score=93.27 Aligned_cols=67 Identities=21% Similarity=0.419 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D 342 (394)
+++.+|+++ | +++.|++|+ |+.| |.++++++.. .+++| .|||||++++|
T Consensus 1 ri~avr~~~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~--~~iEeP~~~~d 49 (67)
T PF01188_consen 1 RIRAVREAV---G--PDIDLMVDA--------NQAW---------------TLEEAIRLAR-ALEDY--EWIEEPLPPDD 49 (67)
T ss_dssp HHHHHHHHH---S--TTSEEEEE---------TTBB---------------SHHHHHHHHH-HHGGG--SEEESSSSTTS
T ss_pred CHHHHHHhh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HcChh--heeecCCCCCC
Confidence 356667776 4 589999999 5655 5778888654 47875 99999999999
Q ss_pred HHHHHHHHhhcCCeEEec
Q 016156 343 WSSWASLQSSVDIQLVGD 360 (394)
Q Consensus 343 ~~~~~~L~~~~~i~I~gd 360 (394)
++++++|++++++||++|
T Consensus 50 ~~~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 50 LDGLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHhCCCCEEeC
Confidence 999999999999999986
No 45
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=98.55 E-value=2e-06 Score=81.60 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=138.9
Q ss_pred HHHHHhHHhHhhhhcCCCCCCH---HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcc
Q 016156 106 NAVKNINDILGPKLVGVDIRDQ---AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKE 182 (394)
Q Consensus 106 ~a~~~I~~~l~p~LiG~dp~~~---e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~ 182 (394)
.....++..++|.|+|+|.... .++-+.|. ++ ..+-.....+||.||.|+++.+.+.---+.+....+..+
T Consensus 88 ~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~--d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~ 161 (410)
T COG3799 88 HFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLI--DG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPR 161 (410)
T ss_pred hhHHHHhhhhhhhhhCccHHhhcchhHHhHhhc--cC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCC
Confidence 3455678999999999986432 22222221 21 134456789999999999999888776666654333333
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
..-|+|+|. .+. +.....+-+|+.++..-+.- |. +.+.-.+.++-.+..|
T Consensus 162 ~te~vP~fg-----QSG---------------d~R~~~vdkMiLK~vdVLPH------gL----iNsve~~G~dG~~l~E 211 (410)
T COG3799 162 VTESVPLFG-----QSG---------------DDRYIAVDKMILKGVDVLPH------GL----INSVEELGFDGEKLRE 211 (410)
T ss_pred ccccccccc-----cCc---------------chhhhhHHHHHHhhcCccch------hh----hhhHHHhCCchHHHHH
Confidence 334455442 111 11111112222111111110 00 0000001133344566
Q ss_pred HHHHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCC--ceeeeCCCC
Q 016156 263 GLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDPFD 339 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~--i~~iEdPl~ 339 (394)
.++-+-+-+...|-.| .-.|.+|+ | |.--.. -.+++....+|.+++-++-+ ..+||-|++
T Consensus 212 yv~Wls~R~~~~g~~gYhP~lH~DV-----Y---G~iGe~---------fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~D 274 (410)
T COG3799 212 YVRWLSDRILSKGTSGYHPTLHIDV-----Y---GTIGEI---------FGMDPLRCAQYIASLEKEAQGLPLYIEGPVD 274 (410)
T ss_pred HHHHHHHHHHhcCCCCCCccEEEee-----h---hhhHHH---------hCCCHHHHHHHHHHHHhhCCCCceeeecccc
Confidence 6776666666555223 57788888 2 221111 12356667777777554433 568999987
Q ss_pred ----CCCHHHHHHHHhhcC-----CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccC
Q 016156 340 ----QDDWSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 340 ----~~D~~~~~~L~~~~~-----i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit 393 (394)
+..++.++++++.+. +.|+.||. +.+..+++...+.++|+.+|||.--+|+|-
T Consensus 275 aGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~VQiKTPDvGsi~ 336 (410)
T COG3799 275 AGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMVQIKTPDVGSIH 336 (410)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEEEecCCCcchHH
Confidence 556788888887652 78999996 677999999999999999999999999873
No 46
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.10 E-value=3.8e-05 Score=76.36 Aligned_cols=88 Identities=11% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-----------CCC-CCCCHHH
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-----------DPF-DQDDWSS 345 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-----------dPl-~~~D~~~ 345 (394)
+|+.|+++.+..++.+ + .++.++++++ .+.++++++.||| .|+ +..+.+.
T Consensus 220 ~d~~v~vri~~~~~~~--~---------------g~~~~e~~~i-a~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~ 281 (336)
T cd02932 220 EDKPLFVRISATDWVE--G---------------GWDLEDSVEL-AKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPF 281 (336)
T ss_pred CCceEEEEEcccccCC--C---------------CCCHHHHHHH-HHHHHHcCCCEEEECCCCCCcccccCCCccccHHH
Confidence 3899999996544332 2 3357788875 5558889999999 477 5567788
Q ss_pred HHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 346 ~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.++|++.+++||++.+. ++++++++++++.+.||++.+
T Consensus 282 ~~~ir~~~~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 282 AERIRQEAGIPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHhhCCCCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 89999999999998886 567999999999999999865
No 47
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.84 E-value=0.00013 Score=72.55 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=66.7
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-------CCCCC---C------
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFDQ---D------ 341 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-------dPl~~---~------ 341 (394)
+|+.|++++++.+++. ..++.++++++ .+.++++++.||| +|... +
T Consensus 215 ~d~~v~vris~~~~~~-----------------~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~ 276 (338)
T cd04733 215 PGFPVGIKLNSADFQR-----------------GGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAMAGAKKESTIAR 276 (338)
T ss_pred CCCeEEEEEcHHHcCC-----------------CCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCccccccccCCcccc
Confidence 3899999996544332 13467888875 5558999999999 55532 1
Q ss_pred ---CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 ---DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 ---D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
..+..++|++++++||++.+. ++++++++++++.+.||++.+
T Consensus 277 ~~~~~~~~~~ik~~v~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 277 EAYFLEFAEKIRKVTKTPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred chhhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 135557899999999998886 567999999999999999875
No 48
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.63 E-value=0.00049 Score=63.43 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=78.9
Q ss_pred CChHHHHHHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc-CC-ceee
Q 016156 258 QDNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD-FP-IVSI 334 (394)
Q Consensus 258 ~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~-~~-i~~i 334 (394)
+...+.++-|++-+.+.|..+ .-.|.+|+. |.--..|. -+.+.+.+|+.++-+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY--------GtiG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVY--------GTIGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-T--------THHHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEcc--------chHHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 456677888888888887544 578889993 22111121 1578888888775443 44 4579
Q ss_pred eCCCCCCC----HHHHHHHHhhcC-----CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccC
Q 016156 335 EDPFDQDD----WSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 335 EdPl~~~D----~~~~~~L~~~~~-----i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit 393 (394)
|.|++..+ ++.+++|++.+. +.|++||. +.+.++++...+.+|+|.+|||.--.|||.
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEW-CNT~eDI~~F~da~A~dmVQIKtPDLGgi~ 176 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADEW-CNTLEDIREFADAKAADMVQIKTPDLGGIN 176 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT---SHHHHHHHHHTT-SSEEEE-GGGGSSTH
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehh-cCCHHHHHHHHhcCCcCEEEecCCCccchh
Confidence 99998665 577888888763 78999995 778999999999999999999999999873
No 49
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.33 E-value=0.003 Score=62.37 Aligned_cols=88 Identities=13% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-------CCCC---------CC
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFD---------QD 341 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-------dPl~---------~~ 341 (394)
.|+.|+++.+..+..+ + .++.++++++ .+.++++++.||+ +|.. ..
T Consensus 207 ~d~~i~vris~~~~~~--~---------------g~~~~e~~~l-a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~ 268 (327)
T cd02803 207 PDFPVGVRLSADDFVP--G---------------GLTLEEAIEI-AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268 (327)
T ss_pred CCceEEEEechhccCC--C---------------CCCHHHHHHH-HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcch
Confidence 3899999996443221 1 2467788875 5558899999994 6544 55
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++..+++++.+++||++... ++++++++++++.+.+|.+.+
T Consensus 269 ~~~~~~~ir~~~~iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 269 FLELAEKIKKAVKIPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred hHHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 677888999999999988776 467999999999999999875
No 50
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.24 E-value=0.001 Score=66.64 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHhhhcCCc-------eeeeCCCCCC--------CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 313 LSAQSLGDLYKEFVRDFPI-------VSIEDPFDQD--------DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i-------~~iEdPl~~~--------D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
++.++++++ .+.++++++ .|.|+|.+.. ..+..+++++.+++||++.+. ++++++++++++.+
T Consensus 221 ~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~-i~~~~~a~~~i~~g 298 (353)
T cd02930 221 STWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR-INTPEVAERLLADG 298 (353)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC-CCCHHHHHHHHHCC
Confidence 467788875 556888884 4567777543 245568899999999998886 46799999999999
Q ss_pred CCcEEee
Q 016156 378 SCNGLLL 384 (394)
Q Consensus 378 a~d~i~i 384 (394)
.+|++.+
T Consensus 299 ~~D~V~~ 305 (353)
T cd02930 299 DADMVSM 305 (353)
T ss_pred CCChhHh
Confidence 9999865
No 51
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=97.15 E-value=0.0046 Score=57.39 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=121.3
Q ss_pred CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 60 ~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
+..+.|++.+++. .||||...++ .|..++.+.|-......+...+.|-++.+. .|
T Consensus 27 RdGl~V~l~~~~r----------~gwGEIaPLP-----gFSqETleqAq~~a~~wl~~W~~g~~~~d~-----~~----- 81 (321)
T COG1441 27 RDGLYVCLREGER----------EGWGEIAPLP-----GFSQETLEQAQEQALAWLNNWLAGHDPLDP-----QM----- 81 (321)
T ss_pred cccEEEEEeeCCc----------ccccccCCCC-----CcCHHHHHHHHHHHHHHHHHHHccCCcccc-----cC-----
Confidence 3457888887633 3999975543 467777776665555566666667644331 01
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
-+...++|.|+..+.+-. | .. |+++ .-|. ++ | +..|. +.
T Consensus 82 --------PSVAFGlScA~aEl~~~L---p----~~---~nY~-~APL--C~----G-------DPDeL---------~~ 120 (321)
T COG1441 82 --------PSVAFGLSCALAELKGTL---P----EA---ANYR-VAPL--CT----G-------DPDEL---------YL 120 (321)
T ss_pred --------chhHHHHHHHHHHHhhhc---h----hh---cCcc-cccC--cC----C-------CHHHH---------HH
Confidence 146778899998877632 1 11 3443 2332 21 2 11221 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
.-..+ .|-+.-| +|.| -|....| -..++++-||+ +|.+|++|+ |-.|+
T Consensus 121 ~L~~m--pGeKvAK----vKVG----------lYEa~RD--GmivnllLEai------PDL~LRLDA--------NRaWt 168 (321)
T COG1441 121 KLADM--PGEKVAK----VKVG----------LYEAVRD--GMIVNLLLEAI------PDLHLRLDA--------NRAWT 168 (321)
T ss_pred HHhcC--Ccceeee----eeee----------eeecccc--chHHHHHHHhC------ccceeeecc--------cccCC
Confidence 10000 0111111 3433 2333322 33567777887 899999999 55554
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhc-C--CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRD-F--PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~-~--~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
. .-+.+ |++.++. | .|.|+|||..-- ..-+.+...++|.|+-||.. ..+ +|. .-..
T Consensus 169 p---------------~Ka~~-FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~eTgIAIAWDEs~-rea-dF~-~e~e 227 (321)
T COG1441 169 P---------------LKAQQ-FAKYVNPDYRSRIAFLEEPCKTR--AESRAFARETGIAIAWDESL-REA-DFA-FEAE 227 (321)
T ss_pred h---------------HHHHH-HHHhcCHHHHHHHHHHhcccCCh--HHHHHHHHhcCeeEeecchh-ccc-ccc-cccC
Confidence 3 33333 2333442 3 399999998632 33456677889999999963 322 232 2346
Q ss_pred CCCcEEeecccccccc
Q 016156 377 KSCNGLLLKVNHLFEI 392 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggi 392 (394)
..+..+.||+.-+|.+
T Consensus 228 ~gv~avVIKPTL~GSl 243 (321)
T COG1441 228 PGVRAVVIKPTLTGSL 243 (321)
T ss_pred CCceEEEecccchhhH
Confidence 6789999999999876
No 52
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=96.59 E-value=0.01 Score=51.81 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 61 PTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 61 ~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+|-|.+.++ |.+ .+-|......|.|-- | |.|. .+.-+..|++.++|.|+|+|..+..+.-..+..+
T Consensus 51 esisV~l~L~dG~va~GDCaaVQYSGagGR----D---PLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~- 119 (159)
T PF05034_consen 51 ESISVMLVLEDGQVAYGDCAAVQYSGAGGR----D---PLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDEL- 119 (159)
T ss_dssp EEEEEEEEETTS-EEEEEE---TTTTSTTS--------S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH--
T ss_pred cEEEEEEEeCCCCEEEeeehheeecccCCC----C---Cccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhc-
Confidence 3688999999 865 333333333344421 1 2233 3445667889999999999999988888888765
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
.++.++-.....+||.||.|+.|++.+.---+.|.
T Consensus 120 --~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~ 154 (159)
T PF05034_consen 120 --VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIA 154 (159)
T ss_dssp --ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHH
T ss_pred --ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHH
Confidence 22234556778999999999999998765544443
No 53
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.06 E-value=0.034 Score=51.77 Aligned_cols=66 Identities=14% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhcCCceee-------eC-CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------ED-PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------Ed-Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++++ .+.++++++.+| ++ +..+-+++..+++++..++||+++.. +.+++++.++++.+.+|.+++
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Gg-i~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGD-IFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHHHHhcCCCEEEE
Confidence 55553 445788899888 66 77778999999999999999998875 578999999999888999876
No 54
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.96 E-value=1.1 Score=44.70 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHhhhcCC-ceeeeC-------C---------CC-C--CCHHHHHHHHhhcCCeEEecCccccCHHHHHH
Q 016156 313 LSAQSLGDLYKEFVRDFP-IVSIED-------P---------FD-Q--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAE 372 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~-i~~iEd-------P---------l~-~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~ 372 (394)
.+.+|.+++ .+++++.+ +.||+= + .. + .+++.-+++++.+++||++--. +++++++.+
T Consensus 225 ~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~~~~~~~~ 302 (343)
T cd04734 225 LSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGR-IRDPAEAEQ 302 (343)
T ss_pred CCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCC-CCCHHHHHH
Confidence 367888875 55688887 677751 1 11 1 1245557788888888764432 357999999
Q ss_pred HHhcCCCcEEee
Q 016156 373 AIQKKSCNGLLL 384 (394)
Q Consensus 373 ~i~~~a~d~i~i 384 (394)
+++.+.||.+.+
T Consensus 303 ~l~~~~~D~V~~ 314 (343)
T cd04734 303 ALAAGHADMVGM 314 (343)
T ss_pred HHHcCCCCeeee
Confidence 999999999865
No 55
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.63 E-value=6.2 Score=39.78 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CC-CCCCCHHHHHHHHhhcCCeEEecCcc-----------------ccCH
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DP-FDQDDWSSWASLQSSVDIQLVGDDLL-----------------VTNP 367 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dP-l~~~D~~~~~~L~~~~~i~I~gde~~-----------------~~~~ 367 (394)
.+.++++++ .+++++.++.+|+ +| +...+..--+++++.+++||++--.. .+++
T Consensus 232 ~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 232 DTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCH
Confidence 467888875 4557777766553 23 22223333355777778776543221 2579
Q ss_pred HHHHHHHhcCCCcEEee
Q 016156 368 KRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 368 ~~~~~~i~~~a~d~i~i 384 (394)
++..+.++.+.||.+.+
T Consensus 311 ~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 311 DRLLERLERGEFDLVAV 327 (361)
T ss_pred HHHHHHHHCCCCCeehh
Confidence 99999999999999754
No 56
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.24 E-value=4 Score=40.87 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CCC---CCCCHHHHHHHHhhc--CCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DPF---DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dPl---~~~D~~~~~~L~~~~--~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
.+.++.+++ .+++++.++.||+ .+. .....+.++.+++.+ ++||++--. +++++++.++++.+ ||
T Consensus 232 ~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g-aD 308 (353)
T cd04735 232 IRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG-AD 308 (353)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-CC
Confidence 356788775 5568888888776 111 122355567777776 577664332 45799999999985 88
Q ss_pred EEe
Q 016156 381 GLL 383 (394)
Q Consensus 381 ~i~ 383 (394)
.+.
T Consensus 309 ~V~ 311 (353)
T cd04735 309 LVA 311 (353)
T ss_pred hHH
Confidence 754
No 57
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.45 E-value=9 Score=38.58 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=44.6
Q ss_pred cCHHH-HHHHHHHhhhcCCceeeeCCCC------CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQS-LGDLYKEFVRDFPIVSIEDPFD------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e-~i~~~~~~l~~~~i~~iEdPl~------~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+.+| ++++ .+++++.++.+|+=-.. +-...--+++++.+++||++.-.. +++..++.|+.+.||.+-+
T Consensus 245 ~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~--~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 245 PNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAY--TAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCC--CHHHHHHHHHcCCCCEEEE
Confidence 35667 6764 55577777666642111 001222367788888877654433 5999999999999999864
No 58
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=85.77 E-value=5.9 Score=39.50 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeC--------C---CCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIED--------P---FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEd--------P---l~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
.+.+|++++ .+.+++.++.||+= + .+..+++--+++++.+++||++--. +++++.++++|+.+.+|.
T Consensus 224 ~~~~e~~~i-~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~-i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 224 LTVQDYVQY-AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL-ITSGAQAEEILQNNRADL 301 (337)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC-CCCHHHHHHHHHcCCCCh
Confidence 357788875 55577777766631 1 1122445557788888888764333 357999999999999998
Q ss_pred Eee
Q 016156 382 LLL 384 (394)
Q Consensus 382 i~i 384 (394)
+.+
T Consensus 302 V~~ 304 (337)
T PRK13523 302 IFI 304 (337)
T ss_pred HHh
Confidence 754
No 59
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=84.63 E-value=8.6 Score=38.32 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhcCCceeeeC--CC-----CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIED--PF-----DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEd--Pl-----~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++++++ .+++++.++.+|+= .. ....++--+++++.+++||++--.. + +..+++.++.+.||.+.+
T Consensus 239 ~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i-~-~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 239 PEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY-D-AESAEAALADGKADLVAF 313 (338)
T ss_pred CHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC-C-HHHHHHHHHcCCCCEEEe
Confidence 56788874 55677777665552 21 2345566678888899887654433 4 999999999999999865
No 60
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=83.84 E-value=9.3 Score=38.56 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
--+++++.+++||++--. ++++....++++.+.+|.+.+
T Consensus 280 ~~~~ik~~~~~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 280 YIKFVKQVTSKPVVGVGR-FTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred HHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 335678888888764332 357999999999999999865
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=81.89 E-value=59 Score=36.12 Aligned_cols=70 Identities=6% Similarity=-0.014 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeC--------CCC--C--CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIED--------PFD--Q--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEd--------Pl~--~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
++.++++++ .+.+++.++.+|+= +.+ . -..+--+++++.+++||++--. ++++..+++.++.+.||
T Consensus 635 ~~~~~~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 635 NTPDDAVEI-ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA-ISEADHVNSIIAAGRAD 712 (765)
T ss_pred CCHHHHHHH-HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHcCCcc
Confidence 467788874 55688887666641 110 0 1123336778888888764433 35799999999999999
Q ss_pred EEee
Q 016156 381 GLLL 384 (394)
Q Consensus 381 ~i~i 384 (394)
.+.+
T Consensus 713 ~v~~ 716 (765)
T PRK08255 713 LCAL 716 (765)
T ss_pred eeeE
Confidence 9876
No 62
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.49 E-value=22 Score=35.04 Aligned_cols=66 Identities=9% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCceee-------eCCCCC--CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------EDPFDQ--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------EdPl~~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++ +.+++++.++.+| ++.... -|++..+++++.+++||+|.-- +.+++++.+.++...||.+++
T Consensus 149 ~~~~-~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd-I~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 149 RKFE-IADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE-IWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred HHHH-HHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC-cCCHHHHHHHHhccCCCEEEE
Confidence 3444 4555777775544 232221 2788889999999999875543 567999999999999999987
No 63
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=80.09 E-value=19 Score=35.66 Aligned_cols=66 Identities=14% Similarity=0.347 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCceee-------eCCCC-CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------EDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------EdPl~-~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++ +.+.+++.++.+| ++... +-|++..+++++++++||+|.=- ++++++++++++...||++++
T Consensus 150 ~~~~-~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg-I~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 150 NCVE-IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD-ITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hHHH-HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC-CCCHHHHHHHHhccCCCEEEE
Confidence 3444 3445777887766 23322 35788889999999999764432 468999999998888999887
No 64
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=78.26 E-value=26 Score=35.47 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=46.9
Q ss_pred ccCHHHHHHHHHHhhhcCCceeeeC------------CC---CCCC-HHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 312 VLSAQSLGDLYKEFVRDFPIVSIED------------PF---DQDD-WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 312 ~~t~~e~i~~~~~~l~~~~i~~iEd------------Pl---~~~D-~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
.++.++++++ .+++++.++.+|+= |- .+.. .+--+++++.+++||++--. ++++....+.++
T Consensus 248 g~~~e~~~~~-~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~-i~~~~~~~~~l~ 325 (382)
T cd02931 248 GRDLEEGLKA-AKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGR-MEDPELASEAIN 325 (382)
T ss_pred CCCHHHHHHH-HHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHHH
Confidence 4577888875 55577777666631 10 0111 12235677888888765443 467999999999
Q ss_pred cCCCcEEee
Q 016156 376 KKSCNGLLL 384 (394)
Q Consensus 376 ~~a~d~i~i 384 (394)
.+.||.+.+
T Consensus 326 ~g~~D~V~~ 334 (382)
T cd02931 326 EGIADMISL 334 (382)
T ss_pred cCCCCeeee
Confidence 999999865
No 65
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.93 E-value=6.5 Score=38.67 Aligned_cols=68 Identities=12% Similarity=0.424 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhcCCceee-------eCCCC-CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 315 AQSLGDLYKEFVRDFPIVSI-------EDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 315 ~~e~i~~~~~~l~~~~i~~i-------EdPl~-~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.++.+++ .+.+++.++.+| +|... +-|++..+++++.+++||++.=- ++++.++.+.++.-.||.+++
T Consensus 137 ~~~~~~~-~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGd-I~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIEF-ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGD-IFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHHH-HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS---SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHHH-HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCc-cCCHHHHHHHHHhcCCcEEEE
Confidence 4556664 556888998877 33333 67899999999999999875542 568999999988767898876
No 66
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=76.51 E-value=23 Score=35.24 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 344 ~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.-+.+++.+++||++--. +++++...++++.+.||.+-+
T Consensus 281 ~~a~~ik~~~~~pvi~~G~-i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 281 DLAEAIKKAVKIPVIGVGG-IRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHSSEEEEESS-TTHHHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhcCceEEEEee-ecchhhhHHHHhcCCceEeec
Confidence 3446677777888775554 456888999999999999865
No 67
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=74.38 E-value=22 Score=32.97 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHhhhcCC--ceeeeC---CCCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFP--IVSIED---PFDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~--i~~iEd---Pl~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++++.. |+...+.++ +.++|+ ...+-+.+-.+++++.+++|++ |+- ++++++++++++.+ +|.+.+
T Consensus 132 ~~e~~~~-~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGG--Irs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 132 KPEIAAA-YCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGG--IRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCC--CCCHHHHHHHHHcC-CCEEEe
Confidence 4666655 666677666 888999 5666788999999999998865 554 46899999988877 787764
No 68
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=72.88 E-value=1.5 Score=29.30 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=11.3
Q ss_pred CCcchhhhhHhhhcCC
Q 016156 27 YRPMRVQCSVASTASS 42 (394)
Q Consensus 27 ~~p~d~~g~la~~f~~ 42 (394)
.+|.||+.+.|+||++
T Consensus 17 ~qP~Di~~F~a~yF~~ 32 (38)
T PF02197_consen 17 EQPDDILQFAADYFEK 32 (38)
T ss_dssp H--S-HHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5899999999999953
No 69
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=69.92 E-value=46 Score=33.58 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=51.8
Q ss_pred CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCC-ceeee------CCCCCCCHHH-----H
Q 016156 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP-IVSIE------DPFDQDDWSS-----W 346 (394)
Q Consensus 279 di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~-i~~iE------dPl~~~D~~~-----~ 346 (394)
+..+++-..+.++.+ ++ .++.+|.+++ .+.|++.+ +.+|. ++...-.... +
T Consensus 216 ~~~vg~Rls~~d~~~-~~---------------g~~~~e~~~l-a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~ 278 (363)
T COG1902 216 DFPVGVRLSPDDFFD-GG---------------GLTIEEAVEL-AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVE 278 (363)
T ss_pred CceEEEEECccccCC-CC---------------CCCHHHHHHH-HHHHHhcCCccEEEeecccccCCCCccccccchhHH
Confidence 666777776555411 11 3456777764 55588776 34442 2211111111 2
Q ss_pred --HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 347 --ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 347 --~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+++....+|+++--. ++++....+.++.+.+|.+-+
T Consensus 279 ~a~~i~~~~~~pvi~~G~-i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 279 FAARIKKAVRIPVIAVGG-INDPEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHHhcCCCEEEeCC-CCCHHHHHHHHHcCCCCEEEe
Confidence 2355666688765543 467999999999999998753
No 70
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.98 E-value=52 Score=31.92 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
-.++.-.++++.+++||+|.-- +++.+++.+.+..| +|.+++
T Consensus 221 ~~l~~v~~i~~~~~ipvi~~GG-I~~~~da~~~l~aG-Ad~V~i 262 (301)
T PRK07259 221 IALRMVYQVYQAVDIPIIGMGG-ISSAEDAIEFIMAG-ASAVQV 262 (301)
T ss_pred ccHHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHcC-CCceeE
Confidence 3567778888888999876554 56899999999887 688876
No 71
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=67.20 E-value=83 Score=29.92 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 336 DPFDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 336 dPl~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
....--|++.++++++.+++||+ ++. +++..++.++++...||.+.+
T Consensus 178 G~~~G~d~~~i~~~~~~~~ipvIasGG--v~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 178 GTMKGYDLELLKSFRNALKIPLIALGG--AGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CCcCCCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHHCCCCEEEE
Confidence 34444589999999999988854 554 457999999986667777654
No 72
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=63.99 E-value=1e+02 Score=28.41 Aligned_cols=44 Identities=11% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 338 FDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 338 l~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
...-|++..+++++.+++||+ ++. +.++.+++++.+. .+|.+++
T Consensus 174 ~~g~~~~~i~~i~~~~~ipvi~~GG--i~~~~di~~~~~~-Ga~gv~v 218 (234)
T cd04732 174 LSGPNFELYKELAAATGIPVIASGG--VSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEecC--CCCHHHHHHHHHC-CCCEEEE
Confidence 344578999999999888865 444 3579999999886 5666554
No 73
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=63.93 E-value=55 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 344 ~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+...++++.+++||++.-- +++++++.+++..| ||.+++
T Consensus 224 ~~v~~i~~~~~ipvi~~GG-I~s~~da~~~l~~G-Ad~V~i 262 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGG-ITSFEDALEFLMAG-ASAVQV 262 (300)
T ss_pred HHHHHHHhcCCCCEEEECC-CCCHHHHHHHHHcC-CCceee
Confidence 5556788888899876443 56899999999877 888876
No 74
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=62.34 E-value=11 Score=37.47 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccc
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLF 390 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~G 390 (394)
++-+.+.++++++++|+++|=.| +++.+...++.+ +|.+.|.|.++|
T Consensus 61 e~A~A~~~Ik~~~~vPLVaDiHf--~~rla~~~~~~g-~~k~RINPGNig 107 (361)
T COG0821 61 EAAEALKEIKQRLNVPLVADIHF--DYRLALEAAECG-VDKVRINPGNIG 107 (361)
T ss_pred HHHHHHHHHHHhCCCCEEEEeec--cHHHHHHhhhcC-cceEEECCcccC
Confidence 45678889999999999999765 566666666655 999999999887
No 75
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=61.60 E-value=85 Score=29.61 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=42.3
Q ss_pred HHhhhcCCce--eeeCCCCC---CCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 323 KEFVRDFPIV--SIEDPFDQ---DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 323 ~~~l~~~~i~--~iEdPl~~---~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+.+++.+.. .+.+-.+- -|++..+++++.++ +||+|.-- +.+.+++.+.++. .||.+++
T Consensus 154 a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGg-I~s~eda~e~l~~-GAd~Vmv 219 (231)
T TIGR00736 154 ALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNS-IDDIESAKEMLKA-GADFVSV 219 (231)
T ss_pred HHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECC-cCCHHHHHHHHHh-CCCeEEE
Confidence 4456676633 34433322 26888899999985 99887664 6789999999985 5888876
No 76
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=61.59 E-value=1.1e+02 Score=28.23 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 339 DQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 339 ~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.--|++..+++++.+++||. ++. +.++.+++++.+.+.||.+.+
T Consensus 175 ~G~d~~~i~~l~~~~~ipvia~GG--i~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 175 SGPNVEATRELAAAVPIPVIASGG--VSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcCCccEEEE
Confidence 33578999999999888865 444 458999999999887888776
No 77
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=61.23 E-value=77 Score=29.33 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccc
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~ 389 (394)
+.+++++-...+.+-++..+|+=|+..+=++..++|++. ++++...-. .+..+....++.| ++++.|-+++.
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-gi~v~~T~V--~s~~Qa~~Aa~AG-A~yvsP~vgR~ 133 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-GIKTNVTAI--FSAAQALLAAKAG-ATYVSPFVGRI 133 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-CCceeeEEe--cCHHHHHHHHHcC-CCEEEEecChH
Confidence 467777766665555688999999999777778888766 788777654 4788888888887 58899888873
No 78
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=60.88 E-value=93 Score=29.58 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCcee-------eeC
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS-------IED 336 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~-------iEd 336 (394)
.+.+++++++-| +.|-+.+|+.-..--- || |.-. ..++..++++. ++++++.- -|=
T Consensus 111 p~~v~~~~~~~g--~rivv~lD~r~g~vav-~G-W~e~---------s~~~~~~l~~~----~~~~g~~~ii~TdI~~DG 173 (241)
T COG0106 111 PDLVKELCEEYG--DRIVVALDARDGKVAV-SG-WQED---------SGVELEELAKR----LEEVGLAHILYTDISRDG 173 (241)
T ss_pred HHHHHHHHHHcC--CcEEEEEEccCCcccc-cc-cccc---------ccCCHHHHHHH----HHhcCCCeEEEEeccccc
Confidence 356677777665 5899999994211000 12 3211 23345554443 45555322 233
Q ss_pred CCCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhc-CCCcEEeecc
Q 016156 337 PFDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQK-KSCNGLLLKV 386 (394)
Q Consensus 337 Pl~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~-~a~d~i~ik~ 386 (394)
-+.-=|++.+++|++.+.+|+. .+= +++..|++.+-+. +...++.=+.
T Consensus 174 tl~G~n~~l~~~l~~~~~ipviaSGG--v~s~~Di~~l~~~~G~~GvIvG~A 223 (241)
T COG0106 174 TLSGPNVDLVKELAEAVDIPVIASGG--VSSLDDIKALKELSGVEGVIVGRA 223 (241)
T ss_pred ccCCCCHHHHHHHHHHhCcCEEEecC--cCCHHHHHHHHhcCCCcEEEEehH
Confidence 4566689999999999998754 332 4579999998776 5555555443
No 79
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=60.67 E-value=47 Score=31.87 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHhhc--CCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 343 ~~~~~~L~~~~--~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
++..+++++.+ ++||++.=- +++.+++.+.+..| +|.+++
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GG-I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGG-IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECC-CCCHHHHHHHHHcC-ccHheE
Confidence 45567888888 788775443 56899999999987 887765
No 80
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=59.38 E-value=1.5e+02 Score=29.48 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCceeee--------CC--------CCCCCHHHHHHHHhhc-CCeEEecCccccCHHHHHHHHhcC
Q 016156 315 AQSLGDLYKEFVRDFPIVSIE--------DP--------FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 315 ~~e~i~~~~~~l~~~~i~~iE--------dP--------l~~~D~~~~~~L~~~~-~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
..+++++ .+.+++.++.+|. +. +++-|++...++++.+ ++||++.=- +++++++.++++.
T Consensus 150 ~~~~~~~-~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGg-I~s~eda~~~l~~- 226 (333)
T PRK11815 150 YEFLCDF-VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGG-IKTLEEAKEHLQH- 226 (333)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECC-cCCHHHHHHHHhc-
Confidence 3455654 4457777766653 11 2345788888999886 688764322 4579999999873
Q ss_pred CCcEEee
Q 016156 378 SCNGLLL 384 (394)
Q Consensus 378 a~d~i~i 384 (394)
||.+++
T Consensus 227 -aDgVmI 232 (333)
T PRK11815 227 -VDGVMI 232 (333)
T ss_pred -CCEEEE
Confidence 898876
No 81
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=59.37 E-value=1.3e+02 Score=27.90 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 340 QDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.-|++..+++++.+++||+ ++. +++..++.+.+....+|.+.+
T Consensus 183 g~~~~~~~~i~~~~~ipvia~GG--i~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIPVIALGG--AGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCCHHHHHHHHhhCCCCEEEECC--CCCHHHHHHHHHHcCCCEEEE
Confidence 3468999999999888865 444 357999999666667777765
No 82
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=57.68 E-value=1.4e+02 Score=28.31 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-CCC------
Q 016156 266 LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-DPF------ 338 (394)
Q Consensus 266 ~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-dPl------ 338 (394)
.+.+..+..|- ..+.+.+|+-.-.+.. +++|.+... ++...+..+.+++ .+.+++.++.+|. -.+
T Consensus 112 ~~~~~~~~~~~-~~iv~slD~~~g~~~~-~~~~~v~i~-----gw~~~~~~~~~~~-~~~l~~~G~~~iivt~i~~~g~~ 183 (254)
T TIGR00735 112 LIYELADRFGS-QCIVVAIDAKRVYVNS-YCWYEVYIY-----GGRESTGLDAVEW-AKEVEKLGAGEILLTSMDKDGTK 183 (254)
T ss_pred HHHHHHHHcCC-CCEEEEEEeccCCCCC-CccEEEEEe-----CCcccCCCCHHHH-HHHHHHcCCCEEEEeCcCcccCC
Confidence 44444444331 2689999983111100 123333311 1111123344443 3446777754432 112
Q ss_pred CCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 339 DQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 339 ~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
..-|++-.+++++.+++||+ .+. ++++.++.++++.+.+|.+.+
T Consensus 184 ~g~~~~~~~~i~~~~~ipvia~GG--i~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 184 SGYDLELTKAVSEAVKIPVIASGG--AGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcCCcceeeE
Confidence 22367888999999888865 343 357999999999988998765
No 83
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.22 E-value=1.8e+02 Score=27.16 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee--CCCCCC
Q 016156 265 VLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE--DPFDQD 341 (394)
Q Consensus 265 ~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE--dPl~~~ 341 (394)
+.++++++..| . .+-+.+|+- ++... . .....++.++++.+.+.+..+=+.-+. =....-
T Consensus 114 ~~~~~~~~~~~--~~~iivslD~~-------~~~~~-~-------~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~ 176 (233)
T cd04723 114 DDDEDRLAALG--EQRLVLSLDFR-------GGQLL-K-------PTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGP 176 (233)
T ss_pred hHHHHHHHhcC--CCCeEEEEecc-------CCeec-c-------ccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCc
Confidence 45677777665 4 799999993 33221 0 012447888888776642221122221 123456
Q ss_pred CHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEeeccccccc
Q 016156 342 DWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFE 391 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Gg 391 (394)
|.+.++++++.+++|+. ++- +++..+++++.+.|+-.++.=..-..|+
T Consensus 177 ~~~~~~~i~~~~~ipvi~~GG--i~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 177 DLELLERLAARADIPVIAAGG--VRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred CHHHHHHHHHhcCCCEEEeCC--CCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 78999999999887754 443 4579999999998755555444444443
No 84
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=49.68 E-value=2.1e+02 Score=26.80 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=38.5
Q ss_pred hhcCCceee-------eCCCCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHh--cCCCcEEee
Q 016156 326 VRDFPIVSI-------EDPFDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQ--KKSCNGLLL 384 (394)
Q Consensus 326 l~~~~i~~i-------EdPl~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~--~~a~d~i~i 384 (394)
+++.++.++ ++....-|++.++++++.+++||. ++. +++++++.++.+ ...||.+.+
T Consensus 155 l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGG--i~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 155 LDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGG--VSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHhhhccCCccEEEE
Confidence 566664432 334445589999999999888864 554 357999998854 245776655
No 85
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=48.87 E-value=2.8e+02 Score=28.31 Aligned_cols=111 Identities=10% Similarity=0.127 Sum_probs=65.1
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHH
Q 016156 247 VGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324 (394)
Q Consensus 247 vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ 324 (394)
.-|++-..+.+...+++++++.++++++.-+ | ..-..++..+ +.+||++....
T Consensus 158 KDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-------------------------~~~em~~ra~~ 212 (391)
T cd08209 158 KDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-------------------------PVFTLKEKARR 212 (391)
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-------------------------CHHHHHHHHHH
Confidence 3444433555666789999999999876433 3 3333444411 35788887544
Q ss_pred hhhcCC-ceeeeCCCCCCCHHHHHHHHh--hcCCeEEecCc----ccc------CH-HHHHHHHhcCCCcEEee
Q 016156 325 FVRDFP-IVSIEDPFDQDDWSSWASLQS--SVDIQLVGDDL----LVT------NP-KRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 325 ~l~~~~-i~~iEdPl~~~D~~~~~~L~~--~~~i~I~gde~----~~~------~~-~~~~~~i~~~a~d~i~i 384 (394)
+.+++ -..+-+|+. .=+..++.|++ .+++||.+--. +.. +. .-+.++.+.-.+|.+..
T Consensus 213 -~~~~G~~~~mv~~~~-~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~ 284 (391)
T cd08209 213 -LVEAGANALLFNVFA-YGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLF 284 (391)
T ss_pred -HHHhCCCEEEEeccc-cchHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCcccc
Confidence 56677 344556654 34677888887 55667664321 111 11 24566677767777655
No 86
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=48.69 E-value=2.3e+02 Score=27.27 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh-hhcCCceeeeC--CCCC
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF-VRDFPIVSIED--PFDQ 340 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~-l~~~~i~~iEd--Pl~~ 340 (394)
.+.++++++.-|. ..|-+.||+-- ++|.|.+...+= .....+++.+++..+.+. +.++=+.-|.- -+.-
T Consensus 122 p~~v~~~~~~~G~-~~IvvsiD~k~-----~~g~~~Va~~GW--~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G 193 (262)
T PLN02446 122 LERLKDLVRLVGK-QRLVLDLSCRK-----KDGRYYVVTDRW--QKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLG 193 (262)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEEEe-----cCCCEEEEECCC--cccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccC
Confidence 3567777777662 27999999931 135444441100 001234555543322221 11111222321 3566
Q ss_pred CCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcC
Q 016156 341 DDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~ 377 (394)
-|++.+++|++.+++||+ ++= +++..+++++.+.+
T Consensus 194 ~d~el~~~l~~~~~ipVIASGG--v~sleDi~~L~~~g 229 (262)
T PLN02446 194 IDEELVALLGEHSPIPVTYAGG--VRSLDDLERVKVAG 229 (262)
T ss_pred CCHHHHHHHHhhCCCCEEEECC--CCCHHHHHHHHHcC
Confidence 689999999999988864 332 46799999987765
No 87
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.27 E-value=2.4e+02 Score=26.45 Aligned_cols=99 Identities=13% Similarity=0.229 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeecc-CCCCCCCCCcccCHHHHHHHHHHhhhcCC---ceeeeCC--
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLN-FKKQPNDGAHVLSAQSLGDLYKEFVRDFP---IVSIEDP-- 337 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~-~~~~~~~~~~~~t~~e~i~~~~~~l~~~~---i~~iEdP-- 337 (394)
.+.++++.+..| +.+-+.+|+- +++.-.. +. ....+++.++++. +++++ +.+..--
T Consensus 112 ~~~l~~~~~~fg--~~ivvslD~~-------~g~v~~~gw~-----~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~d 173 (234)
T PRK13587 112 TDWLKEMAHTFP--GRIYLSVDAY-------GEDIKVNGWE-----EDTELNLFSFVRQ----LSDIPLGGIIYTDIAKD 173 (234)
T ss_pred HHHHHHHHHHcC--CCEEEEEEee-------CCEEEecCCc-----ccCCCCHHHHHHH----HHHcCCCEEEEecccCc
Confidence 345666666554 4799999983 2321111 00 0123345555554 44455 2222221
Q ss_pred --CCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEe
Q 016156 338 --FDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLL 383 (394)
Q Consensus 338 --l~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~ 383 (394)
..--|++-++++++.+++||. ++- +++++++.++.+.+ ++.+.
T Consensus 174 Gt~~G~~~~li~~l~~~~~ipvi~~GG--i~s~edi~~l~~~G-~~~vi 219 (234)
T PRK13587 174 GKMSGPNFELTGQLVKATTIPVIASGG--IRHQQDIQRLASLN-VHAAI 219 (234)
T ss_pred CCCCccCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcC-CCEEE
Confidence 123478889999998887654 333 35799999998765 44443
No 88
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=47.70 E-value=1.9e+02 Score=27.09 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHhhhcCCceee--eCCC--CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 323 KEFVRDFPIVSI--EDPF--DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 323 ~~~l~~~~i~~i--EdPl--~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+.+++.++.+| ..-. .+-|++..++++ .++||+|.-- +++.++++++++.| ||.+++
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGg-I~s~eda~~~l~~G-aD~Vmi 219 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNS-VTTIESAKEMFSYG-ADMVSV 219 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECC-cCCHHHHHHHHHcC-CCEEEE
Confidence 344666664433 1111 123455555554 5789887543 56899999999876 999887
No 89
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=46.04 E-value=9.5 Score=25.16 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=14.4
Q ss_pred CCCcchhhhhHhhhcCC
Q 016156 26 SYRPMRVQCSVASTASS 42 (394)
Q Consensus 26 ~~~p~d~~g~la~~f~~ 42 (394)
-.+|.|++-+.++||+.
T Consensus 16 ~~qP~d~~~f~~~yF~k 32 (38)
T smart00394 16 RAQPSDLVQFAADYFEK 32 (38)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 46899999999999953
No 90
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=43.99 E-value=2.1e+02 Score=28.20 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecc--cccccc-------c------CCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVA--ASEFFT-------K------DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~a--a~~~~~-------~------ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.-++..||++++++|+. ++.||-=.+ ||.||. + ...|..+ .-+..|++.-...=
T Consensus 174 DGrV~aIR~aLd~ag~~-~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmD----------paN~~EAlrE~~lD 242 (330)
T COG0113 174 DGRVGAIREALDEAGFI-DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMD----------PANRREALREIELD 242 (330)
T ss_pred cchHHHHHHHHHHcCCC-cceeeehhHHHhhhccccHHHHhhcccccCCcceeccC----------CcCHHHHHHHHHhh
Confidence 34789999999999874 777774321 344552 0 1235544 22567777644322
Q ss_pred hhc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 326 l~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
+++ -++.++---++. ++-.++++++++.|+++-..+. -...++.+.++|+.|-
T Consensus 243 ~~EGAD~lMVKPal~Y--LDIi~~vk~~~~lP~~AYqVSG-EYaMikAAa~nGwide 296 (330)
T COG0113 243 IEEGADILMVKPALPY--LDIIRRVKEEFNLPVAAYQVSG-EYAMIKAAAQNGWIDE 296 (330)
T ss_pred HhcCCcEEEEcCCchH--HHHHHHHHHhcCCCeEEEecch-HHHHHHHHHHcCCcch
Confidence 333 558888777776 4557888999999999887653 2445666677777663
No 91
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=43.52 E-value=36 Score=34.16 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=38.4
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccccc
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEI 392 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggi 392 (394)
+-+.+.++++++++|+++|=.| +++..-..++. .+|.+.|.|.++|.+
T Consensus 68 ~a~al~~I~~~~~iPlvADIHF--d~~lAl~a~~~-G~~~iRINPGNig~~ 115 (360)
T PRK00366 68 AAAALPEIKKQLPVPLVADIHF--DYRLALAAAEA-GADALRINPGNIGKR 115 (360)
T ss_pred HHHhHHHHHHcCCCCEEEecCC--CHHHHHHHHHh-CCCEEEECCCCCCch
Confidence 4577788899999999999764 67777666654 489999999999863
No 92
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=43.01 E-value=3.6e+02 Score=27.73 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|++-..+.+...+++++++.+|++++.-+ | ..-..+++.+ +.+||.+.. ++
T Consensus 174 DDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-------------------------~~~em~~ra-~~ 227 (407)
T TIGR03332 174 DDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-------------------------RTFDLKDKA-KR 227 (407)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-------------------------CHHHHHHHH-HH
Confidence 344433455556788999999998877433 3 2333334411 346777764 44
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHh--hcCCeEEecCc----ccc------C-HHHHHHHHhcCCCcEEee
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQS--SVDIQLVGDDL----LVT------N-PKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~--~~~i~I~gde~----~~~------~-~~~~~~~i~~~a~d~i~i 384 (394)
+.+++ -..+-+|+. .=+..++.|++ .+++||.+--. +.. + ..-+.++.+.-.+|.+..
T Consensus 228 a~~~G~~~~mv~~~~-~G~~~~~~l~~~~~~~lpihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~ 299 (407)
T TIGR03332 228 AAELGADVLLFNVFA-YGLDVLQSLAEDDEIPVPIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLF 299 (407)
T ss_pred HHHhCCCEEEEeccc-cChHHHHHHHhcCCCCcEEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCcccc
Confidence 66677 334455554 34677888887 55566633221 001 1 234566677777777665
No 93
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=42.89 E-value=2.4e+02 Score=30.17 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCCCC-cEEEEecccccccc-----------------cCC----eeeccCCCCCCCCCcccCHHHHHHHH
Q 016156 265 VLLTDAIEKAGYTGK-INIGMDVAASEFFT-----------------KDG----NYDLNFKKQPNDGAHVLSAQSLGDLY 322 (394)
Q Consensus 265 ~~v~~Av~~ag~~gd-i~l~iD~aa~~~~~-----------------~ng----~Y~~~~~~~~~~~~~~~t~~e~i~~~ 322 (394)
+++.++.+.-| .+ |-+.||+--. +. .+| +|++... ++...+.-+++++.
T Consensus 374 ~~i~~~~~~fg--~q~ivvsiD~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----gg~~~~~~~~~~~~ 444 (538)
T PLN02617 374 TSIEQISRVYG--NQAVVVSIDPRRV--YVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVK-----GGREGRPIGAYELA 444 (538)
T ss_pred HHHHHHHHHcC--CceEEEEEecCcC--cccCccccccccccccccCcCcccceEEEEEEe-----cCcccCCCCHHHHH
Confidence 56777777664 45 9999998311 10 011 2544411 12222333444433
Q ss_pred HHhhhcCCce-eeeCCCCCC------CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEe
Q 016156 323 KEFVRDFPIV-SIEDPFDQD------DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (394)
Q Consensus 323 ~~~l~~~~i~-~iEdPl~~~------D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ 383 (394)
.+ +++++.- .+=-=++.| |++-++++++.+++||++--- +.++.++.++++...+|...
T Consensus 445 ~~-~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG-~g~~~d~~~~~~~~~~~a~~ 510 (538)
T PLN02617 445 KA-VEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSG-AGTPEHFSDVFSKTNASAAL 510 (538)
T ss_pred HH-HHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHhcCCccEEE
Confidence 33 6666622 222333333 889999999999988652221 35799999999876666654
No 94
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=42.50 E-value=1.8e+02 Score=28.88 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecc--cccccc-------c-----CCeeeccCCCCCCCCCcccCHHHHHHHHHHhh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVA--ASEFFT-------K-----DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~a--a~~~~~-------~-----ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l 326 (394)
.-++.+||+++++.|+ .++.||-=.+ ||.||. + ...|..+. -+..|++.-...=+
T Consensus 171 DGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp----------~n~~eAlre~~~D~ 239 (322)
T PRK13384 171 DGQVKAIRQGLDAAGF-EHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDY----------ANGRQALLEALLDE 239 (322)
T ss_pred ccHHHHHHHHHHHCCC-CCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCC----------CCHHHHHHHHHhhH
Confidence 4588999999999998 4677774332 455662 1 13465552 14566665433223
Q ss_pred hc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 327 RD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 327 ~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
++ -++.++-=-++.- +-.+++++++++|+++-..+.. ...++.+.+.|+.|
T Consensus 240 ~EGAD~lMVKPal~YL--DIi~~~k~~~~lPvaaYqVSGE-YaMikaAa~~G~~d 291 (322)
T PRK13384 240 AEGADILMVKPGTPYL--DVLSRLRQETHLPLAAYQVGGE-YAMIKFAALAGALD 291 (322)
T ss_pred hhCCCEEEEcCCchHH--HHHHHHHhccCCCEEEEEchHH-HHHHHHHHHcCCcc
Confidence 33 5688888888874 4567888888999988876432 44555667777766
No 95
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=38.94 E-value=2.5e+02 Score=26.47 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHhhhcC--CceeeeCCCCCCCHHHHHHHHhhcCCeEEec
Q 016156 314 SAQSLGDLYKEFVRDF--PIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~--~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gd 360 (394)
+.+|+|++... ..+. +..|++-|. |.+.++++.++++.|++.-
T Consensus 158 ~~~eai~Ra~a-y~~AGAD~v~v~~~~---~~~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 158 GLDEAIERAKA-YAEAGADGIFVEGLK---DPEEIRAFAEAPDVPLNVN 202 (243)
T ss_pred CHHHHHHHHHH-HHHcCCCEEEeCCCC---CHHHHHHHHhcCCCCEEEE
Confidence 46789987655 4555 499998776 7789999999988776543
No 96
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.54 E-value=69 Score=31.75 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 341 DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 341 ~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
-|++.-+++++.++ +||++.-- +.++++.++.++...||.+++
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGd-I~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGD-IKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCC-cCCHHHHHHHHHhhCCCEEEE
Confidence 68999999999999 99887764 678999999999999999987
No 97
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=36.58 E-value=4.7e+02 Score=27.08 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=63.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh
Q 016156 249 DEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326 (394)
Q Consensus 249 ~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l 326 (394)
|+.-..+.+...++++.++.+|++++.-+ | .....+++.+ +.+||++. .+++
T Consensus 196 DE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-------------------------~~~em~~r-a~~a 249 (424)
T cd08208 196 DEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-------------------------EVDRLMEL-HDVA 249 (424)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-------------------------CHHHHHHH-HHHH
Confidence 34333444555688888888888876433 4 2333344421 35677776 4446
Q ss_pred hcCC-ceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc----c------ccCHHHHHHHHhcCCCcEEee
Q 016156 327 RDFP-IVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL----L------VTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 327 ~~~~-i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~----~------~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+++ -..+-+|+.. =+..++.|++..+.||.+--. + .-+..-+.++.+.-.+|.+..
T Consensus 250 ~~~G~~~vmv~~~~~-G~~al~~L~~~~~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~ 317 (424)
T cd08208 250 VRNGANALLINAMPV-GLSAVRMLRKHAQVPLIAHFPFIASFSRLEKYGIHSRVMTKLQRLAGLDVVIM 317 (424)
T ss_pred HHhCCCEEEEeeecc-cHHHHHHHHhcCCCeEEeccCccccccCCCCCCCcHHHHHHHHHHcCCCeeec
Confidence 6666 4455566653 356677888777766653220 0 112344666777777777765
No 98
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=36.00 E-value=3e+02 Score=26.20 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCC-CcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCC-----ceeee-C
Q 016156 265 VLLTDAIEKAGYTG-KINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP-----IVSIE-D 336 (394)
Q Consensus 265 ~~v~~Av~~ag~~g-di~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~-----i~~iE-d 336 (394)
++|.++-+..| - -|-+.||+--. ++ ++++|++-.. ++..-|.-+++++-.+ +++.+ +..+- |
T Consensus 111 ~lI~~~a~~FG--sQciVvaIDakr~--~~g~~~~~~v~~~-----gGr~~t~~d~~~Wa~~-~e~~GAGEIlLtsmD~D 180 (256)
T COG0107 111 ELITEAADRFG--SQCIVVAIDAKRV--PDGENGWYEVFTH-----GGREDTGLDAVEWAKE-VEELGAGEILLTSMDRD 180 (256)
T ss_pred HHHHHHHHHhC--CceEEEEEEeeec--cCCCCCcEEEEec-----CCCcCCCcCHHHHHHH-HHHcCCceEEEeeeccc
Confidence 56667666554 3 48999999321 01 2446666421 1222233455554333 66655 22222 2
Q ss_pred CC-CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEe
Q 016156 337 PF-DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (394)
Q Consensus 337 Pl-~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ 383 (394)
-. .--|++..+.+++.+++|+++--- ..++.+|.+++..+.+|...
T Consensus 181 Gtk~GyDl~l~~~v~~~v~iPvIASGG-aG~~ehf~eaf~~~~adAaL 227 (256)
T COG0107 181 GTKAGYDLELTRAVREAVNIPVIASGG-AGKPEHFVEAFTEGKADAAL 227 (256)
T ss_pred ccccCcCHHHHHHHHHhCCCCEEecCC-CCcHHHHHHHHHhcCccHHH
Confidence 22 235899999999999999764432 45799999999888777643
No 99
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.22 E-value=1.3e+02 Score=29.21 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=44.8
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCCC---------CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDPF---------DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdPl---------~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
.+++++.+++. +.++.++==-+ +.-|++-++++++.+++|++--=.+....+++++.++.|.+.
T Consensus 153 T~pe~a~~Fv~----~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~K 225 (283)
T PRK07998 153 TEPEKVKDFVE----RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAK 225 (283)
T ss_pred CCHHHHHHHHH----HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcE
Confidence 36888876543 33444443333 778999999999999999773333455688999999988554
No 100
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.97 E-value=1.3e+02 Score=27.93 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCCCCC-HHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCC
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~~~D-~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
+.+++++. .+.+.+.++..||=++.-.+ .+..++|+++.+ +.|-+|. +++.++++..++.|+-
T Consensus 25 ~~~~a~~i-~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGT--Vl~~~~a~~a~~aGA~ 89 (212)
T PRK05718 25 KLEDAVPL-AKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGT--VLNPEQLAQAIEAGAQ 89 (212)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEee--ccCHHHHHHHHHcCCC
Confidence 57788875 45577899999999987544 466788888877 5555554 5689999999988763
No 101
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.80 E-value=3.8e+02 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 340 QDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.-|++..+++++.+++|++ .+. ++++.++.++++...||.+++
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GG--i~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGG--AGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHhCCCCEEEE
Confidence 3478889999998888754 443 357999999999877887765
No 102
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=34.40 E-value=3.5e+02 Score=26.91 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEec--ccccccc-------------cCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT-------------KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~--aa~~~~~-------------~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.-++.+||+++++.|+ .++.||-=. -||.||. ....|..++ -+..|++.-...=
T Consensus 171 DGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp----------~N~~EAlre~~~D 239 (324)
T PF00490_consen 171 DGRVGAIREALDEAGF-SDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDP----------ANRREALREAELD 239 (324)
T ss_dssp TTHHHHHHHHHHHTTC-TTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-T----------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCC-CCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCC----------ccHHHHHHHhhhh
Confidence 4478999999999998 477776422 2455662 013465541 1567777644332
Q ss_pred hhc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 326 l~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+++ -++.++-=-++. ++-.+++++++++|+++-..+.. ...++.+.++|+.|
T Consensus 240 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~P~~aYqVSGE-YaMikaAa~~G~~d 292 (324)
T PF00490_consen 240 IEEGADILMVKPALPY--LDIIRRVKERFDLPVAAYQVSGE-YAMIKAAAQNGWID 292 (324)
T ss_dssp HHTT-SEEEEESSGGG--HHHHHHHHHHCTS-EEEEETHHH-HHHHHHHHHTTSS-
T ss_pred HhhCCCEEEeecchhH--HHHHHHHHHhcCCCEEEEEehHH-HHHHHHHHHCCCcc
Confidence 444 568888888886 55678899999999998876432 44566667777776
No 103
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=33.83 E-value=4.3e+02 Score=25.29 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHH-HHHHHHHHhhhcCCceeeeC--CCCCC
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQ-SLGDLYKEFVRDFPIVSIED--PFDQD 341 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~-e~i~~~~~~l~~~~i~~iEd--Pl~~~ 341 (394)
+.+.++.++-|. ..|-+.||+-- .++|.|.+...+= .....+++. ++++.+.+.+.++=+.-|.- -+.--
T Consensus 116 ~~~~~i~~~fG~-~~IvvsiD~k~----~~~g~~~V~~~GW--~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~ 188 (253)
T TIGR02129 116 KRLKEIVSLVGK-DRLIVDLSCRK----TQDGRWIVAMNKW--QTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGI 188 (253)
T ss_pred HHHHHHHHHhCC-CCEEEEEEEEE----cCCCcEEEEECCC--cccCCCChHHHHHHHHHhhCCEEEEeeecccCccccC
Confidence 455666666552 37999999920 1134344331100 001244555 66665544322222232321 24455
Q ss_pred CHHHHHHHHhhcCCeEE-ecCccccCHHHHHHH--HhcCCCcEEee
Q 016156 342 DWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEA--IQKKSCNGLLL 384 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~--i~~~a~d~i~i 384 (394)
|++.+++|++.+++||. .+= +++..+++++ +..+..+++.-
T Consensus 189 dlel~~~l~~~~~ipVIASGG--v~s~eDi~~l~~~~~g~~~aIvG 232 (253)
T TIGR02129 189 DEELVSKLGEWSPIPITYAGG--AKSIDDLDLVDELSKGKVDLTIG 232 (253)
T ss_pred CHHHHHHHHhhCCCCEEEECC--CCCHHHHHHHHHhcCCCCcEEee
Confidence 89999999999988864 332 4579999988 43345665543
No 104
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=33.20 E-value=4.9e+02 Score=26.23 Aligned_cols=67 Identities=12% Similarity=0.344 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhcCCceee---------eCC-CCCCCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 316 QSLGDLYKEFVRDFPIVSI---------EDP-FDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 316 ~e~i~~~~~~l~~~~i~~i---------EdP-l~~~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
++-++ |++++++-|..|| .-+ -.+-|++..+.|++.++ +|+++.-. +.++++..+.++.-.+|+++.
T Consensus 155 ~kTvd-~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGn-I~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 155 EKTVD-YAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGN-ILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHH-HHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCC-cCcHHHHHHHHHHhCCceEEe
Confidence 44555 4567888887666 233 56778999999999999 99876553 567999999888666777654
No 105
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=33.16 E-value=54 Score=32.70 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccc
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFE 391 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Gg 391 (394)
+-+.+.++++.+++|+++|=.| +.......+ ...+|.+.|.|.++|.
T Consensus 60 ~A~al~~I~~~~~iPlVADIHF--d~~lAl~a~-~~g~dkiRINPGNig~ 106 (346)
T TIGR00612 60 SAAAFEAIKEGTNVPLVADIHF--DYRLAALAM-AKGVAKVRINPGNIGF 106 (346)
T ss_pred HHHhHHHHHhCCCCCEEEeeCC--CcHHHHHHH-HhccCeEEECCCCCCC
Confidence 4466777788899999999765 444444444 3469999999999885
No 106
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=33.02 E-value=1.7e+02 Score=26.89 Aligned_cols=43 Identities=7% Similarity=0.133 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
..+++-.+++++.+++||..+-- +++..+++++++.+ ||.+.+
T Consensus 60 ~~~~~~i~~i~~~~~~pv~~~GG-I~~~ed~~~~~~~G-a~~vil 102 (233)
T PRK00748 60 PVNLELIEAIVKAVDIPVQVGGG-IRSLETVEALLDAG-VSRVII 102 (233)
T ss_pred cccHHHHHHHHHHCCCCEEEcCC-cCCHHHHHHHHHcC-CCEEEE
Confidence 37889999999998888765543 57899999999886 666554
No 107
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=32.04 E-value=1.7e+02 Score=28.91 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHHHHHHhhc--CCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 343 ~~~~~~L~~~~--~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
++.-.++++.+ ++||+|-=- +++..++.+.+..| +|.+++
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GG-I~t~~da~e~l~aG-Ad~V~v 308 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGG-ISSGEDAYEKIRAG-ASLVQL 308 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECC-CCCHHHHHHHHHcC-CCHHhc
Confidence 45556777888 578764332 46799999999866 777765
No 108
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=31.43 E-value=88 Score=30.16 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 339 ~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+-.++..+++++.+++||++.=- +++++++.+.+..| +|.+++
T Consensus 216 ~~~~~~~i~~i~~~~~ipii~~GG-I~~~~da~~~l~~G-Ad~V~i 259 (296)
T cd04740 216 KPIALRMVYQVYKAVEIPIIGVGG-IASGEDALEFLMAG-ASAVQV 259 (296)
T ss_pred chHHHHHHHHHHHhcCCCEEEECC-CCCHHHHHHHHHcC-CCEEEE
Confidence 344566667888888888876543 56899999999988 698876
No 109
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=30.50 E-value=5.4e+02 Score=25.36 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhcCCceeee--------CCCC--------CCCHHHHHHHHhhc-CCeEEecCccccCHHHHHHHHhcCC
Q 016156 316 QSLGDLYKEFVRDFPIVSIE--------DPFD--------QDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 316 ~e~i~~~~~~l~~~~i~~iE--------dPl~--------~~D~~~~~~L~~~~-~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
++++++ .+.+++.++.+|. +-+. +-|++.-.++++.+ ++||+|.=- +.+..++.+.+. .
T Consensus 141 ~~~~~~-~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGd-I~s~~da~~~l~--g 216 (318)
T TIGR00742 141 EFLCDF-VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGG-IKNSEQIKQHLS--H 216 (318)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECC-cCCHHHHHHHHh--C
Confidence 455553 4557777766663 2222 22666667888887 688764332 467999999885 5
Q ss_pred CcEEee
Q 016156 379 CNGLLL 384 (394)
Q Consensus 379 ~d~i~i 384 (394)
||.+++
T Consensus 217 ~dgVMi 222 (318)
T TIGR00742 217 VDGVMV 222 (318)
T ss_pred CCEEEE
Confidence 898876
No 110
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=29.91 E-value=6.5e+02 Score=26.17 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-CC-cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHH
Q 016156 247 VGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK-INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324 (394)
Q Consensus 247 vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-gd-i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ 324 (394)
.-|++-..+.+...++++.++.+|++++.-+ |. .--.++..+ =+.+||.+....
T Consensus 190 KDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiTa------------------------~~~~em~~ra~~ 245 (439)
T cd08211 190 KNDEPQANQPFCPLKKVIPLVADAMRRAQDETGEAKLFSANITA------------------------DDPDEMIARGEY 245 (439)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecCCC------------------------CCHHHHHHHHHH
Confidence 3444433455556788888888888776432 32 222333311 036788876544
Q ss_pred hhhcCC-----ceeeeCCCCCCCHHHHHHHHh-hcCCeEEecCc----c-------ccCHHHHHHHHhcCCCcEE
Q 016156 325 FVRDFP-----IVSIEDPFDQDDWSSWASLQS-SVDIQLVGDDL----L-------VTNPKRIAEAIQKKSCNGL 382 (394)
Q Consensus 325 ~l~~~~-----i~~iEdPl~~~D~~~~~~L~~-~~~i~I~gde~----~-------~~~~~~~~~~i~~~a~d~i 382 (394)
..+... -..+-+++.. -+..++.|++ ..++||.+--. + .-+..-+.++.+.-.+|.+
T Consensus 246 a~~~gg~~~G~~~vMv~~~~~-G~~al~~lr~~~~~l~IhaHrA~~ga~~r~~~~~Gis~~vl~kl~RLaGaD~~ 319 (439)
T cd08211 246 ILEAFGPNAGHVAFLVDGYVA-GPAAVTTARRRFPDQFLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASGI 319 (439)
T ss_pred HHHhcCcccCceEEEECcccc-hHHHHHHHHhhCCCcEEEecccccccccccccCCCccHHHHHHHHHhcCCCcc
Confidence 334333 5566777754 5677777777 34555442211 0 1122345566666667766
No 111
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.86 E-value=1.8e+02 Score=26.81 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCCCCC-HHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCC
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~~~D-~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
+++++++. .+.+-+.++..+|=+++-.+ .+..++++++.+ +.|-++. +.++++++++++.|+-
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~ 82 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQ 82 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCC
Confidence 56777775 45577799999999997544 466889988876 6665664 5689999999988763
No 112
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=29.65 E-value=2.8e+02 Score=25.77 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCce-eeeCC-----
Q 016156 265 VLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIV-SIEDP----- 337 (394)
Q Consensus 265 ~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~-~iEdP----- 337 (394)
+.+.++++..| . .+-+.+|+-. | |.+...+- .....+++.++++. ++++++. +|---
T Consensus 110 ~~l~~~~~~~g--~~~ivvslD~~~-------g-~~v~~~gw--~~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dG 173 (229)
T PF00977_consen 110 ELLEELAERYG--SQRIVVSLDARD-------G-YKVATNGW--QESSGIDLEEFAKR----LEELGAGEIILTDIDRDG 173 (229)
T ss_dssp HHHHHHHHHHG--GGGEEEEEEEEE-------T-EEEEETTT--TEEEEEEHHHHHHH----HHHTT-SEEEEEETTTTT
T ss_pred hHHHHHHHHcC--cccEEEEEEeee-------c-eEEEecCc--cccCCcCHHHHHHH----HHhcCCcEEEEeeccccC
Confidence 34555565555 4 7999999943 2 22210000 00113456666654 4445522 22222
Q ss_pred -CCCCCHHHHHHHHhhcCCeE-EecCccccCHHHHHHHHhcCCCcEEe
Q 016156 338 -FDQDDWSSWASLQSSVDIQL-VGDDLLVTNPKRIAEAIQKKSCNGLL 383 (394)
Q Consensus 338 -l~~~D~~~~~~L~~~~~i~I-~gde~~~~~~~~~~~~i~~~a~d~i~ 383 (394)
..--|++.+++|++.+++|+ +++= +.+..+++++.+.+...++.
T Consensus 174 t~~G~d~~~~~~l~~~~~~~viasGG--v~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 174 TMQGPDLELLKQLAEAVNIPVIASGG--VRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp TSSS--HHHHHHHHHHHSSEEEEESS----SHHHHHHHHHTTECEEEE
T ss_pred CcCCCCHHHHHHHHHHcCCCEEEecC--CCCHHHHHHHHHCCCcEEEE
Confidence 22348899999999999875 4443 46899999998777744443
No 113
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.07 E-value=4.6e+02 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 338 FDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 338 l~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
...-|++..+++++.+++||+ ++. ++++.++.++.+.+ ++.+.+
T Consensus 177 ~~g~~~~~i~~i~~~~~iPvia~GG--I~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 177 LEGVNTEPVKELVDSVDIPVIASGG--VTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcC-CCEEEE
Confidence 355688999999999988865 444 45799999976654 555443
No 114
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=28.42 E-value=57 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=31.5
Q ss_pred CHHHHHHHHhh-----cCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccc
Q 016156 342 DWSSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389 (394)
Q Consensus 342 D~~~~~~L~~~-----~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~ 389 (394)
+-+.+.+++++ +++|+++|=.| +++..-..++. +|.+.|.|.++
T Consensus 57 ~a~al~~I~~~l~~~g~~iPlVADIHF--d~~lAl~a~~~--v~kiRINPGNi 105 (359)
T PF04551_consen 57 AAEALKEIKKRLRALGSPIPLVADIHF--DYRLALEAIEA--VDKIRINPGNI 105 (359)
T ss_dssp HHHHHHHHHHHHHCTT-SS-EEEEEST--TCHHHHHHHHC---SEEEE-TTTS
T ss_pred HHHHHHHHHHhhccCCCCCCeeeecCC--CHHHHHHHHHH--hCeEEECCCcc
Confidence 44666777777 77999999765 67777777776 99999999998
No 115
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=28.33 E-value=6.8e+02 Score=26.35 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-CC-cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK-INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-gd-i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|++-..+.+...+++++++.+|++++.-+ |. ....++..+. +.+||++... +
T Consensus 202 DDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~------------------------~~~em~~ra~-~ 256 (475)
T CHL00040 202 DDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAG------------------------TCEEMYKRAV-F 256 (475)
T ss_pred cCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCC------------------------CHHHHHHHHH-H
Confidence 344433455556788888888888876433 42 2224444210 3567777543 3
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHH---hhcCCeEEe
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQ---SSVDIQLVG 359 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~---~~~~i~I~g 359 (394)
+.+++ -..+-+|+.. =+..++.|+ +..++||.+
T Consensus 257 a~e~G~~~~mv~~~~~-G~~al~~l~~~~~~~~l~Iha 293 (475)
T CHL00040 257 ARELGVPIVMHDYLTG-GFTANTSLAHYCRDNGLLLHI 293 (475)
T ss_pred HHHcCCceEEEecccc-ccchHHHHHHHhhhcCceEEe
Confidence 55555 3345555542 234455555 355565543
No 116
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.10 E-value=5e+02 Score=24.26 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 341 DDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
-|++.++++++.+++||. .+. ++++.++.++++...||.+++
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GG--v~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGG--AGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECC--CCCHHHHHHHHHhCCccEEeE
Confidence 478899999999888754 444 347999999988756776655
No 117
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=27.87 E-value=6.8e+02 Score=25.72 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.|+.-..+.+...+++++++.+|++++.-+ | ..-..++..+ +.+||++....
T Consensus 178 DDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-------------------------~~~em~~ra~~- 231 (406)
T cd08207 178 DDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITD-------------------------DIDEMRRNHDL- 231 (406)
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-------------------------CHHHHHHHHHH-
Confidence 344433455556788888888888876422 3 2333444411 36788876544
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc----ccc------CHHHHHHHHhcCCCcEEee
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL----LVT------NPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~----~~~------~~~~~~~~i~~~a~d~i~i 384 (394)
+.+++ -..+-+|+. .=+..++.|++..++||.+--. +.. +..-+.++.+.-.+|.+..
T Consensus 232 ~~~~G~~~~mv~~~~-~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~ 300 (406)
T cd08207 232 VVEAGGTCVMVSLNS-VGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHV 300 (406)
T ss_pred HHHhCCCeEEEeccc-cchHHHHHHHhcCCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCcccc
Confidence 55666 445566663 4567788888877777763221 111 2234666677777777665
No 118
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.72 E-value=2.7e+02 Score=26.67 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCCcEEEEecc
Q 016156 259 DNREGLVLLTDAIEKAGYTGKINIGMDVA 287 (394)
Q Consensus 259 ~~~~~l~~v~~Av~~ag~~gdi~l~iD~a 287 (394)
+.+|+.++++.+++.+. +++.+.+-+.
T Consensus 52 t~~Er~~l~~~~~~~~~--~~~~vi~gv~ 78 (289)
T PF00701_consen 52 TDEERKELLEIVVEAAA--GRVPVIAGVG 78 (289)
T ss_dssp -HHHHHHHHHHHHHHHT--TSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcc--CceEEEecCc
Confidence 35788888888887775 5777776663
No 119
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=27.57 E-value=6.9e+02 Score=25.72 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|+.-..+.+...+++++++.++++++.-+ | ..-..++..+ +.+||.+.. ++
T Consensus 179 DDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~-------------------------~~~em~~ra-~~ 232 (412)
T TIGR03326 179 DDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITA-------------------------PVREMERRA-EL 232 (412)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecC-------------------------CHHHHHHHH-HH
Confidence 344433455556788888888888766422 3 2333444421 256777764 34
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHh---hcCCeEEecCcc----------ccCHHHHHHHHhcCCCcEEee
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQS---SVDIQLVGDDLL----------VTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~---~~~i~I~gde~~----------~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.+.+ -..+-+|+.. =+..++.|++ ..++||.+--.. .-+..-+.++.+.-.+|.+..
T Consensus 233 ~~~~G~~~~mv~~~~~-G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~~ 304 (412)
T TIGR03326 233 VADLGGQYVMVDVVVC-GWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLHT 304 (412)
T ss_pred HHHhCCCeEEEEeecc-chHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCeeee
Confidence 55566 4445566553 3455666665 445666652110 012234566666666776655
No 120
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=27.51 E-value=2.4e+02 Score=28.58 Aligned_cols=41 Identities=7% Similarity=0.226 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEe
Q 016156 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ 383 (394)
..|+..+.++.+.+++||++++ +.+..+++++++. .||+++
T Consensus 174 ~~~p~~l~~~i~~~~IPVI~G~--V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 174 SGEPLNLKEFIGELDVPVIAGG--VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred CCCHHHHHHHHHHCCCCEEEeC--CCCHHHHHHHHHc-CCCEEE
Confidence 3468888999999999988755 3579999999985 588887
No 121
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=27.42 E-value=4.8e+02 Score=24.59 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHhhhcCC--ceeeeCCCCCCCHHHHHHHHhhcCCeEEe
Q 016156 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~--i~~iEdPl~~~D~~~~~~L~~~~~i~I~g 359 (394)
.-+|+|++... ..+.+ ..|+|-+ .+.+..+++.++++.|+.-
T Consensus 153 ~~deaI~R~~a-Y~eAGAD~ifi~~~---~~~~~i~~~~~~~~~Pl~v 196 (238)
T PF13714_consen 153 GLDEAIERAKA-YAEAGADMIFIPGL---QSEEEIERIVKAVDGPLNV 196 (238)
T ss_dssp HHHHHHHHHHH-HHHTT-SEEEETTS---SSHHHHHHHHHHHSSEEEE
T ss_pred CHHHHHHHHHH-HHHcCCCEEEeCCC---CCHHHHHHHHHhcCCCEEE
Confidence 35889987655 45555 8888877 4566688999999988653
No 122
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.35 E-value=1.1e+02 Score=29.87 Aligned_cols=43 Identities=19% Similarity=0.603 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
-|++..+++++.+++||++.=- ++++.++.++++...||.+++
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGg-I~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGD-IFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCC-CCCHHHHHHHHHhhCCCEEEE
Confidence 4678888999999998775443 568999999998888999876
No 123
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=26.99 E-value=7.1e+02 Score=25.62 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|++-....+...+++++++.+|++++.-+ | ..-..++..+ +.+||++... +
T Consensus 169 DDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-------------------------~~~em~~ra~-~ 222 (407)
T PRK09549 169 DDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-------------------------RTFELKEKAK-R 222 (407)
T ss_pred cCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-------------------------CHHHHHHHHH-H
Confidence 344433445556788999888888876433 3 3334444421 2467777644 4
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHh--hcCCeEEecCc----ccc------CH-HHHHHHHhcCCCcEEee
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQS--SVDIQLVGDDL----LVT------NP-KRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~--~~~i~I~gde~----~~~------~~-~~~~~~i~~~a~d~i~i 384 (394)
+.+.+ -..+-+|+. -=+..++.|++ .+++||.+--. +.. +. --+.++.+.-.+|.+..
T Consensus 223 a~~~G~~~~m~~~~~-~G~~al~~l~~~~~~~lpIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~ 294 (407)
T PRK09549 223 AAEAGADALLFNVFA-YGLDVLQSLAEDPEIPVPIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADFSLF 294 (407)
T ss_pred HHHcCCCeEEEeccc-cchHHHHHHHhcCCCCcEEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCcccc
Confidence 55666 334455544 34566777777 44456543221 111 12 23556666666776554
No 124
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=26.74 E-value=4.9e+02 Score=24.56 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhhcCC--ceeeeCCCCCCCHHHHHHHHhhcCCeEEe
Q 016156 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~--i~~iEdPl~~~D~~~~~~L~~~~~i~I~g 359 (394)
..+++|++.. .+++.+ ..|+|-+ +.+.-+++++.+++|+.+
T Consensus 154 ~~~~ai~Ra~-ay~~AGAd~i~~e~~----~~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 154 AGEQLIADAL-AYAPAGADLIVMECV----PVELAKQITEALAIPLAG 196 (240)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEcCC----CHHHHHHHHHhCCCCEEE
Confidence 4678888744 466766 8888854 678889999999999875
No 125
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.69 E-value=6.2e+02 Score=25.14 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEec--ccccccc-------c------CCeeeccCCCCCCCCCcccCHHHHHHHHHH
Q 016156 260 NREGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT-------K------DGNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324 (394)
Q Consensus 260 ~~~~l~~v~~Av~~ag~~gdi~l~iD~--aa~~~~~-------~------ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ 324 (394)
..-++.+||+++.+.|+ .++.||-=. -||.||. + ...|.++. -+..|++.-...
T Consensus 165 MDGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp----------~n~~eAlre~~~ 233 (320)
T cd04823 165 MDGRIGAIREALDAEGF-TNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDP----------ANSREALREVAL 233 (320)
T ss_pred hhhHHHHHHHHHHHCCC-CCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCC----------CCHHHHHHHHHh
Confidence 34589999999999998 467776422 1455552 1 12465552 145666654332
Q ss_pred hhhc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 325 FVRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 325 ~l~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
=+++ -++.++-=-++. ++-.+.+++++++||++-..+.. ...++.+.+.|+.|.
T Consensus 234 Di~EGAD~lMVKPal~Y--LDIi~~~k~~~~lPvaaYqVSGE-YaMikaAa~~G~~d~ 288 (320)
T cd04823 234 DIAEGADMVMVKPGMPY--LDIIRRVKDEFGVPTFAYQVSGE-YAMLKAAAQNGWLDE 288 (320)
T ss_pred hHHhCCCEEEEcCCchH--HHHHHHHHHhcCCCEEEEEccHH-HHHHHHHHHcCCCcH
Confidence 2343 568888888887 45578888999999998876532 445556677777663
No 126
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=25.55 E-value=6.3e+02 Score=25.12 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEec--ccccccc-------c------CCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT-------K------DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~--aa~~~~~-------~------ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.-++.+||+++++.|+ .++.||-=. -||.||. + ...|.+++ -+..|+++-...=
T Consensus 169 DGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp----------~n~~eAlre~~~D 237 (323)
T PRK09283 169 DGRVGAIREALDEAGF-TDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDP----------ANRREALREVALD 237 (323)
T ss_pred ccHHHHHHHHHHHCCC-CCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCC----------CCHHHHHHHHHhh
Confidence 4588999999999998 477777422 1344552 1 13465552 1566776544332
Q ss_pred hhc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 326 l~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+++ -++.++-=-++. ++-.+++++++++||++-..+.. ...++.+.+.|+.|
T Consensus 238 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~PvaaYqVSGE-YaMikaAa~~G~~D 290 (323)
T PRK09283 238 IEEGADMVMVKPALPY--LDIIRRVKDEFNLPVAAYQVSGE-YAMIKAAAQNGWID 290 (323)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHhcCCCCEEEEEccHH-HHHHHHHHHcCCCC
Confidence 333 568888877887 45578889999999998876532 44566677777776
No 127
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=25.45 E-value=5.2e+02 Score=23.57 Aligned_cols=101 Identities=13% Similarity=0.258 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-------CC
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DP 337 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-------dP 337 (394)
+.+.+++++.|. ..+.+.+|+-...... .|+.+ ....++.++++. +++.++.++- ..
T Consensus 109 ~~~~~~~~~~g~-~~i~~sid~~~~~v~~-~g~~~----------~~~~~~~~~~~~----~~~~g~~~ii~~~~~~~g~ 172 (230)
T TIGR00007 109 DLVKELLKEYGP-ERIVVSLDARGGEVAV-KGWLE----------KSEVSLEELAKR----LEELGLEGIIYTDISRDGT 172 (230)
T ss_pred HHHHHHHHHhCC-CcEEEEEEEECCEEEE-cCCcc----------cCCCCHHHHHHH----HHhCCCCEEEEEeecCCCC
Confidence 445566666541 2588889983211110 11110 012345554443 4445533222 22
Q ss_pred CCCCCHHHHHHHHhhcCCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 338 FDQDDWSSWASLQSSVDIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 338 l~~~D~~~~~~L~~~~~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
...-|++..+++++.+++|+. ++. +.++.+++++.+.+ +|.+++
T Consensus 173 ~~g~~~~~i~~i~~~~~ipvia~GG--i~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 173 LSGPNFELTKELVKAVNVPVIASGG--VSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHCC-CCEEEE
Confidence 234578999999999888754 554 35799999987754 666655
No 128
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.25 E-value=3.2e+02 Score=28.89 Aligned_cols=66 Identities=2% Similarity=-0.022 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcCCceeeeCCCCCCC----HHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 315 AQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 315 ~~e~i~~~~~~l~~~~i~~iEdPl~~~D----~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
..+..++...++ +.++..||=+..+.. ++..+++++..+ ++|.++.. .++.+++.+++.|+ |++.+
T Consensus 240 ~~~~~~ra~~Lv-~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV--~t~e~a~~li~aGA-d~I~v 311 (502)
T PRK07107 240 TRDYAERVPALV-EAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV--VDREGFRYLAEAGA-DFVKV 311 (502)
T ss_pred hhhHHHHHHHHH-HhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc--cCHHHHHHHHHcCC-CEEEE
Confidence 345556555544 467777776677666 788999999885 78899985 36999999998765 88765
No 129
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=24.75 E-value=1.8e+02 Score=26.73 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=4.8
Q ss_pred cCHHHHHHHHh
Q 016156 365 TNPKRIAEAIQ 375 (394)
Q Consensus 365 ~~~~~~~~~i~ 375 (394)
.+++.+++..+
T Consensus 107 ~dp~~~~~i~~ 117 (234)
T cd04732 107 KNPELVKELLK 117 (234)
T ss_pred hChHHHHHHHH
Confidence 34444444433
No 130
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.53 E-value=5.9e+02 Score=24.78 Aligned_cols=110 Identities=11% Similarity=0.157 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCCcEEEEecccccccc---------cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc-
Q 016156 259 DNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFT---------KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD- 328 (394)
Q Consensus 259 ~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~---------~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~- 328 (394)
+.+|+.+.++.+++.++ |++.+++-+.+...-+ +.|.=-+..-.|-+ ...+.++++++|.++.+.
T Consensus 59 t~eEr~~v~~~~~~~~~--grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y---~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 59 TWEEKQAFVATVVETVA--GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW---LPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred CHHHHHHHHHHHHHHhC--CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC---CCCCHHHHHHHHHHHHHhC
Confidence 46888888888887775 6787777775433221 11200000000000 022567888888887664
Q ss_pred --CCceeeeCCCC---CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 329 --FPIVSIEDPFD---QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 329 --~~i~~iEdPl~---~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.||+..--|-. .-..+-+.+|. +.+--+.--|.. +...+.+.++.
T Consensus 134 ~~lPv~iYn~P~~tg~~l~~~~l~~L~-~~pnivgiKdss--d~~~~~~~i~~ 183 (309)
T cd00952 134 PEMAIAIYANPEAFKFDFPRAAWAELA-QIPQVVAAKYLG--DIGALLSDLAA 183 (309)
T ss_pred CCCcEEEEcCchhcCCCCCHHHHHHHh-cCCCEEEEEecC--ChHHHHHHHHH
Confidence 45666666633 34567777776 344212223332 45555555543
No 131
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=24.48 E-value=6.8e+02 Score=24.77 Aligned_cols=106 Identities=11% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEec--ccccccc-------c------CCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT-------K------DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~--aa~~~~~-------~------ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.-++.+||+++++.|+ .++.||-=. -||.||. + ...|..+. -+..|++.-...=
T Consensus 161 DGrV~aIR~aLd~~g~-~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdp----------an~~eAlre~~~D 229 (314)
T cd00384 161 DGRVAAIREALDEAGF-SDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDP----------ANRREALREVELD 229 (314)
T ss_pred ccHHHHHHHHHHHCCC-CCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCC----------CCHHHHHHHHHhh
Confidence 4578999999999998 467777432 1445552 0 12465541 1466666543322
Q ss_pred hhc-CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 326 l~~-~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+++ -++.++-=-++. ++-.+++++++++|+++-..+.. ...++.+.++|+.|
T Consensus 230 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~PvaaYqVSGE-YaMikaAa~~G~id 282 (314)
T cd00384 230 IEEGADILMVKPALAY--LDIIRDVRERFDLPVAAYNVSGE-YAMIKAAAKNGWID 282 (314)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhcCCCEEEEEccHH-HHHHHHHHHcCCcc
Confidence 343 568888887887 45578889999999998876532 44556667777766
No 132
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=23.72 E-value=7.3e+02 Score=24.64 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEec--ccccccc-------c------CCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT-------K------DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~--aa~~~~~-------~------ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
.-++.+||+++++.|+..++.||-=. -||.||. + ...|..++ -+..|+++-...=
T Consensus 165 DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp----------~n~~eAlre~~~D 234 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPP----------GARGLALRAVERD 234 (320)
T ss_pred ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCC----------cCHHHHHHHHHhh
Confidence 45789999999999983377777432 1455652 0 12465542 1456666543222
Q ss_pred hhc-CCceeeeCCCCCCCHHHHHHHHhhc-CCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 326 l~~-~~i~~iEdPl~~~D~~~~~~L~~~~-~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+++ -++.++-=-++. ++-.+++++++ ++||++-..+.. ...++.+.+.|+.|
T Consensus 235 ~~EGAD~lMVKPal~Y--LDIi~~~k~~~~~~PvaaYqVSGE-YaMikaAa~~G~iD 288 (320)
T cd04824 235 VSEGADMIMVKPGTPY--LDIVREAKDKHPDLPLAVYHVSGE-YAMLHAAAEAGAFD 288 (320)
T ss_pred HHhCCCEEEEcCCchH--HHHHHHHHHhccCCCEEEEEccHH-HHHHHHHHHcCCCc
Confidence 333 568888877887 45578899999 799998876532 44556667777766
No 133
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.57 E-value=2.8e+02 Score=25.58 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCCC-CCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCC
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQ-DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~~-~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
+.+++.+. .+.+-+-+|..||=+++- +-++..++|+++.+ +.|=.+. +.+++++++.++.|+-
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai~aGA~ 78 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAAKAGSR 78 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHHHcCCC
Confidence 56777775 445777899999999974 44567888888877 5554554 5689999999998763
No 134
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.22 E-value=6.1e+02 Score=23.57 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCH
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~ 343 (394)
.+.+++++++. |++.+.||+-..+++. +|+.+.. .+++.++++.+.+.+..+=+.-+.-==...=+
T Consensus 108 ~~~l~~~~~~~---g~ivvslD~~~g~v~~-~gw~~~~----------~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~ 173 (228)
T PRK04128 108 LEFLEKVTSEF---EGITVSLDVKGGRIAV-KGWLEES----------SIKVEDAYEMLKNYVNRFIYTSIERDGTLTGI 173 (228)
T ss_pred HHHHHHHHHHc---CCEEEEEEccCCeEec-CCCeEcC----------CCCHHHHHHHHHHHhCEEEEEeccchhcccCH
Q ss_pred HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccC
Q 016156 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 344 ~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit 393 (394)
+.+.+.....++..+|+ +++..+++++.+.++--++.-+.=.-|.++
T Consensus 174 d~l~~~~~~~pviasGG---v~~~~Dl~~l~~~g~~gvivg~al~~g~~~ 220 (228)
T PRK04128 174 EEIERFWGDEEFIYAGG---VSSAEDVKKLAEIGFSGVIIGKALYEGRIS 220 (228)
T ss_pred HHHHHhcCCCCEEEECC---CCCHHHHHHHHHCCCCEEEEEhhhhcCCcC
No 135
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.82 E-value=1.9e+02 Score=26.91 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=22.2
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
|++..+++++.+++||.++=- +++..+++++++.+ ||.+.+
T Consensus 59 ~~~~i~~i~~~~~~pv~~~GG-I~s~~d~~~~l~~G-~~~v~i 99 (243)
T cd04731 59 MLDVVERVAEEVFIPLTVGGG-IRSLEDARRLLRAG-ADKVSI 99 (243)
T ss_pred cHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHHcC-CceEEE
Confidence 556666666666655443322 34566666666554 554443
No 136
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.67 E-value=3.1e+02 Score=27.08 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=58.4
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeC----CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHH
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIED----PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAE 372 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEd----Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~ 372 (394)
-+++.+.+|.-+ .-.-+++++.+.+++++.++.-+== -++++.+..|.++.++.+..++-|-+ -..+++
T Consensus 101 ~Tein~~Gp~is---~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S----g~~L~~ 173 (310)
T COG1105 101 ETEINFPGPEIS---EAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS----GEALLA 173 (310)
T ss_pred EEEecCCCCCCC---HHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC----hHHHHH
Confidence 677776655432 2234566777777788888765554 57888999999999988999888853 566778
Q ss_pred HHhcCCCcEEeecccc
Q 016156 373 AIQKKSCNGLLLKVNH 388 (394)
Q Consensus 373 ~i~~~a~d~i~ik~~~ 388 (394)
.++.+ -..||||+
T Consensus 174 ~L~~~---P~lIKPN~ 186 (310)
T COG1105 174 ALEAK---PWLIKPNR 186 (310)
T ss_pred HHccC---CcEEecCH
Confidence 88766 67777764
No 137
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.44 E-value=3.4e+02 Score=25.71 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred ccCHHHHHHHHHHhhhcCCceeeeC--CC-CCCCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCC---CcEEee
Q 016156 312 VLSAQSLGDLYKEFVRDFPIVSIED--PF-DQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKS---CNGLLL 384 (394)
Q Consensus 312 ~~t~~e~i~~~~~~l~~~~i~~iEd--Pl-~~~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a---~d~i~i 384 (394)
.++.++.++++. .+.+.++..||= |. .++|++..+.+++..+ +.+.+=-. .+.++++.+++.+. +|.+.+
T Consensus 16 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r--~~~~~v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 16 SLTPEEKLEIAR-QLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLAR--AVKKDIDAAAEALKPAKVDRIHT 92 (268)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEcc--CCHhhHHHHHHhCCCCCCCEEEE
Confidence 567888888654 588899999997 54 5678888888887554 55443211 24777877777653 676665
No 138
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=22.16 E-value=1.8e+02 Score=28.14 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=41.8
Q ss_pred CceeeeCCCCCCCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEEeecccc
Q 016156 330 PIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNH 388 (394)
Q Consensus 330 ~i~~iEdPl~~~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~ 388 (394)
+++|+.|+++++.++.-.+..++.+ +.|+|--+.+.....+-.......+.++.|.+..
T Consensus 177 ~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 236 (271)
T PTZ00409 177 NVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISK 236 (271)
T ss_pred cEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCC
Confidence 5899999999888877666666777 4566776666666666665556667776666543
No 139
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.65 E-value=6.7e+02 Score=23.61 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHhhhc---CCceeeeCCCCC---CCHHHHHHHHhhcCC-eEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQSLGDLYKEFVRD---FPIVSIEDPFDQ---DDWSSWASLQSSVDI-QLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~---~~i~~iEdPl~~---~D~~~~~~L~~~~~i-~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+..|.+.++ .+.++ +++.++|.--.. .|.+-.+++++.++. ||. |+- +++++++++++..+ +|.+++
T Consensus 137 ~~~~~~~~~~-~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGG--Irs~e~a~~~l~~G-AD~VVV 212 (232)
T PRK04169 137 LDKPDIAAYA-ALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGG--IRSPEQARELMAAG-ADTIVV 212 (232)
T ss_pred CChHHHHHHH-HHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECC--CCCHHHHHHHHHhC-CCEEEE
Confidence 3566666644 33443 569999966443 348888999998876 754 654 46899999988876 566655
No 140
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.39 E-value=3.1e+02 Score=26.77 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCC----------CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPF----------DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl----------~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+++|+.+++.+ -++.++-=-+ +.-|++-++++++.+++|++--=.+....++++++++.|.+.
T Consensus 157 ~peea~~Fv~~----TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~K 229 (286)
T PRK08610 157 DPKECQELVEK----TGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAK 229 (286)
T ss_pred CHHHHHHHHHH----HCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeE
Confidence 68888876543 3443332211 467999999999999999873333455678999999887543
No 141
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.22 E-value=3.8e+02 Score=25.01 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCCCCC-HHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEE
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~~~D-~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i 382 (394)
+++++++... .+-+-++..||=|++-.+ .+.-+.|++..+ +.|-++. +.++++++++++.|+-=++
T Consensus 23 ~~e~a~~~a~-Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT--VL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 23 DVEEALPLAK-ALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGT--VLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred CHHHHHHHHH-HHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEcccc--ccCHHHHHHHHHcCCCEEE
Confidence 5778888644 466688999999998555 578899999988 6665665 4589999999998764333
No 142
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=21.16 E-value=9.5e+02 Score=25.05 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|++-..+.+...++++.++.++++++.-+ | .....++..+ =+.+||++... +
T Consensus 180 DDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa------------------------~~~~em~~ra~-~ 234 (450)
T cd08212 180 DDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTA------------------------GTMEEMYKRAE-F 234 (450)
T ss_pred cCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccC------------------------CCHHHHHHHHH-H
Confidence 344433445556788888888888776422 3 2223333311 13677777644 3
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHh---hcCCeEEe
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQS---SVDIQLVG 359 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~---~~~i~I~g 359 (394)
+.+.+ -..+-+-+. =+.+++.|++ ..++||.+
T Consensus 235 a~~~G~~~~mv~~~~--G~~~l~~l~~~a~~~~l~Iha 270 (450)
T cd08212 235 AKELGSPIIMHDLLT--GFTAIQSLAKWCRDNGMLLHL 270 (450)
T ss_pred HHHhCCCeEeeeccc--ccchHHHHHHHhhhcCceEEe
Confidence 55555 222333333 5666777766 55666554
No 143
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=20.80 E-value=9.3e+02 Score=24.79 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~ 325 (394)
-|+.-..+.+...++++.++.+|++++.-+ | ..-..++..+ +.+||++... +
T Consensus 166 DDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-------------------------~~~em~~ra~-~ 219 (412)
T cd08213 166 DDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITA-------------------------PVREMERRAE-L 219 (412)
T ss_pred cCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecC-------------------------CHHHHHHHHH-H
Confidence 344433344555688888888888776433 3 3333444421 2466666533 3
Q ss_pred hhcCC-ceeeeCCCCCCCHHHHHHHHh---hcCCeEEe
Q 016156 326 VRDFP-IVSIEDPFDQDDWSSWASLQS---SVDIQLVG 359 (394)
Q Consensus 326 l~~~~-i~~iEdPl~~~D~~~~~~L~~---~~~i~I~g 359 (394)
+.+++ -..+-+++.. =+..++.|++ ..++||.+
T Consensus 220 a~e~G~~~~mv~~~~~-G~~~l~~l~~~~~~~~l~iha 256 (412)
T cd08213 220 VADLGGKYVMIDVVVA-GWSALQYLRDLAEDYGLAIHA 256 (412)
T ss_pred HHHhCCCeEEeecccc-ChHHHHHHHHhccccCeEEEE
Confidence 45555 3344555542 2344555555 44556554
No 144
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.75 E-value=3.2e+02 Score=26.61 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHHhhhcCCceeee------------CCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE------------DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE------------dPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
.+++|+.+++.+ -++.++= +| .-|++-++++++++++|++--=.+....++++++++.|.+
T Consensus 156 T~peeA~~Fv~~----TgvD~LAvaiGt~HG~Y~~~p--~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~- 228 (285)
T PRK07709 156 ADPAECKHLVEA----TGIDCLAPALGSVHGPYKGEP--NLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTS- 228 (285)
T ss_pred CCHHHHHHHHHH----hCCCEEEEeecccccCcCCCC--ccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCe-
Confidence 378888886543 3444443 34 6789999999999999987433345568899999988754
Q ss_pred EEee
Q 016156 381 GLLL 384 (394)
Q Consensus 381 ~i~i 384 (394)
-+|+
T Consensus 229 KiNi 232 (285)
T PRK07709 229 KINV 232 (285)
T ss_pred EEEe
Confidence 3344
No 145
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.33 E-value=6.7e+02 Score=23.39 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=47.7
Q ss_pred cCHHHHHHHHHHhhhcCC--ceeeeCCCCCCCHHHHHHHHhhc-CCeEE-ecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSV-DIQLV-GDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~--i~~iEdPl~~~D~~~~~~L~~~~-~i~I~-gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+++++.. |+...+.++ +.++|--=..-|.+-.+++++.+ ++||+ |+- ++++++++++++.+ +|.+.+
T Consensus 132 ~~~e~~~a-yA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGG--Irs~e~a~~l~~aG-AD~VVV 203 (219)
T cd02812 132 LKPEDAAA-YALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGG--IRSGEQAKEMAEAG-ADTIVV 203 (219)
T ss_pred CCHHHHHH-HHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCC--CCCHHHHHHHHHcC-CCEEEE
Confidence 35666554 566566654 88999322347788899999998 77754 665 46899999998766 566654
No 146
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=20.32 E-value=43 Score=32.43 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=21.1
Q ss_pred ceeeeCC----CCCCCHHHHHHHHhhcC-CeEEe
Q 016156 331 IVSIEDP----FDQDDWSSWASLQSSVD-IQLVG 359 (394)
Q Consensus 331 i~~iEdP----l~~~D~~~~~~L~~~~~-i~I~g 359 (394)
+.||..| +.+.|++.+++|.++++ |||++
T Consensus 117 cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIa 150 (281)
T PF00735_consen 117 CLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIA 150 (281)
T ss_dssp EEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEES
T ss_pred EEEEEcCCCccchHHHHHHHHHhcccccEEeEEe
Confidence 4556666 55779999999999998 78873
Done!