RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016156
(394 letters)
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 674 bits (1741), Expect = 0.0
Identities = 258/352 (73%), Positives = 298/352 (84%), Gaps = 2/352 (0%)
Query: 37 ASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGD 95
+ A + VKARQIIDSRGNPTVEVDL T +FR+AVPSGASTGIYEALELRDGD
Sbjct: 19 HLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGD 78
Query: 96 KSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVS 155
K Y GKGVL AVKN+N+I+ P L+G+D DQ ++D MLE+DGTPNK K+GANAIL VS
Sbjct: 79 KD-YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVS 137
Query: 156 LSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA 215
L+VC+AGA KGVPLYKHI +L+G K+LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA
Sbjct: 138 LAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 197
Query: 216 TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275
+SF EA++MGSEVYH LK +IK+KYGQDACNVGDEGGFAPN+QDN+EGL LL +AIEKAG
Sbjct: 198 SSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAG 257
Query: 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
YTGKI IGMDVAASEF+TKD YDL+FK++ NDG++ S L DLYKEFV D+PIVSIE
Sbjct: 258 YTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIE 317
Query: 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DPFDQDDW WA L S D+Q+VGDDLLVTNPKR+A+AIQ+K+CN LLLKVN
Sbjct: 318 DPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVN 369
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 577 bits (1490), Expect = 0.0
Identities = 206/346 (59%), Positives = 264/346 (76%), Gaps = 15/346 (4%)
Query: 48 SVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGKGVL 105
+KAR+I+DSRGNPTVEV++ T+D + R+AVPSGASTG +EA+ELRDGDKS Y GKGVL
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 106 NAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGA 165
AVKN+N+I+ P L+G+D+ DQ +D +++E+DGTPNKSK+GANAILGVSL+V +A A A
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 166 KGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMG 225
G+PLY+++ G V+PVP FNVINGG+HAGN L QEFMI+PVGA SF+EALRMG
Sbjct: 121 LGLPLYRYL---GGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMG 177
Query: 226 SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG--KINIG 283
+EVYH LK ++K+K G A NVGDEGGFAPN+ N E L LL +AIEKAGY KI I
Sbjct: 178 AEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237
Query: 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343
+DVAASEF+ +G Y + +D L+++ L D YKE V+ +PIVSIEDPFD+DDW
Sbjct: 238 LDVAASEFY-DEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDW 291
Query: 344 SSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
WA L + + IQ+VGDDL VTNP+R+ + I+KK+ N LL+KVN
Sbjct: 292 EGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVN 337
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 576 bits (1487), Expect = 0.0
Identities = 227/354 (64%), Positives = 283/354 (79%), Gaps = 12/354 (3%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
+KS+KAR+I+DSRGNPTVEVDL T+ +FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 4 IKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 63
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSV 158
L AV+N+N+I+ P L+G D+ DQ ++D +M+E +DGT N KSK+GANAIL VS++V
Sbjct: 64 LKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAV 123
Query: 159 CRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGAT 216
RA A AKGVPLYK++ +L+G T + V+PVP FNVINGG HAGN LA QEFMI PVGA
Sbjct: 124 ARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAP 183
Query: 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGY 276
SF EALRMG+EVYH LK +IK+KYG DA NVGDEGGFAPN++D E L LL +AI+KAGY
Sbjct: 184 SFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKAGY 243
Query: 277 TGKINIGMDVAASEFFTKDGN-YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
GK+ I MDVAASEF+ K+ YDL+FK ND ++ L+ + L +LY + V+ +PIVSIE
Sbjct: 244 EGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIE 303
Query: 336 DPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DPFDQDDW ++A L +++ +Q+VGDDLLVTNP RI +AI+KK+CN LLLKVN
Sbjct: 304 DPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVN 357
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 515 bits (1329), Expect = 0.0
Identities = 190/350 (54%), Positives = 252/350 (72%), Gaps = 20/350 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGG 101
+K++ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG EA+ELRDGDKS Y G
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N+ + P L+G+D DQ +D M+E+DGTPNKSK+GANAILGVSL+V +A
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A + G+PLY++ L G V+PVP N+INGG+HA NN+ +QEFMI+PVGA SF EA
Sbjct: 122 AADSLGLPLYRY---LGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEA 178
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LRMG+EV+H LK ++KEK G + VGDEGGFAPN++ N E L L+ +AIEKAGY G+
Sbjct: 179 LRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D AASEF+ KDG Y L +G L+++ + D E V +PIVSIED D
Sbjct: 237 IALALDCAASEFY-KDGKYVL-------EGE-GLTSEEMIDYLAELVDKYPIVSIEDGLD 287
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW W L + +QLVGDDL VTN KR+ + I+K + N +L+KVN
Sbjct: 288 ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVN 337
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 458 bits (1180), Expect = e-161
Identities = 188/345 (54%), Positives = 250/345 (72%), Gaps = 21/345 (6%)
Query: 49 VKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106
V AR+I+DSRGNPTVEV++ +D F R+AVPSGASTG +EA+ELRDGD Y GKGVL
Sbjct: 7 VIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSR-YLGKGVLK 65
Query: 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAK 166
AV N+N+I+ P L+G+D DQA +D++++E+DGT NKSK+GANAILGVSL+V +A A +
Sbjct: 66 AVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASL 125
Query: 167 GVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS 226
G+PLY+++ G LV+PVP NVINGG+HA NNL +QEFMI+PVGA SF EALR G+
Sbjct: 126 GIPLYRYL---GGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGA 182
Query: 227 EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK--INIGM 284
EV+H LK ++KEK + VGDEGGFAPN++ N E L +L +AIE+AGY I + +
Sbjct: 183 EVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALAL 240
Query: 285 DVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344
DVAASEF+ KDG Y L + L+++ L + Y E V+ +PIVSIEDP +DDW
Sbjct: 241 DVAASEFY-KDGKYVLEGES--------LTSEELIEYYLELVKKYPIVSIEDPLSEDDWE 291
Query: 345 SWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+A L + +Q+VGDDL VTNPKR+ + I+K + N +L+K N
Sbjct: 292 GFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPN 336
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 441 bits (1137), Expect = e-154
Identities = 182/349 (52%), Positives = 248/349 (71%), Gaps = 18/349 (5%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKG 103
+ ++AR+I+DSRGNPTVEV++I +D R+AVPSGASTG EALELRDGDK Y GKG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
VL AV+N+N+I+ P+L+G+D DQ E+D I++E+DGTPNKSK+GANAILGVS++V +A A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
+ G+PLY++ L G V+PVP N+INGG+HA NNL QEFMI+PVGA SF EALR
Sbjct: 121 DSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPSFREALR 177
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK-IN 281
MG+EV+H LK ++KEK A VGDEGGFAPN+ N E L ++ +AIEKAGY G+ +
Sbjct: 178 MGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYKPGEDVA 235
Query: 282 IGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
+ +D AASEF+ +DG Y + + L+++ + + Y+E V +PI+SIED +
Sbjct: 236 LALDCAASEFYDEEDGKYVYKGENKQ------LTSEEMIEYYEELVEKYPIISIEDGLSE 289
Query: 341 DDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+DW WA L + +Q+VGDDL VTN + + E I+ N +L+K N
Sbjct: 290 EDWEGWAELTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPN 338
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 359 bits (923), Expect = e-124
Identities = 142/211 (67%), Positives = 170/211 (80%), Gaps = 3/211 (1%)
Query: 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYG 241
V+PVP NVINGGSHAGN LAMQEFMILP GA+SF EA+RMGSEVYH LK +IK KYG
Sbjct: 1 PYVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYG 60
Query: 242 QDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDL 300
QDA NVGDEGGFAPN+Q N+E L L+ +AIEKAGYTGK+ I MDVA+SEF+ KDG YDL
Sbjct: 61 QDATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDL 120
Query: 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358
+FK +D + L++ L DLYKE ++ +PIVSIEDPFD+DDW +W L +S+ IQ+V
Sbjct: 121 DFKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIV 180
Query: 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
GDDL VTNPKRIA+AI+KK+CN LLLKVN +
Sbjct: 181 GDDLTVTNPKRIAKAIEKKACNSLLLKVNQI 211
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 237 bits (607), Expect = 2e-78
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG +EA+ELRDGDKS YGGK
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
GVL AV+N+N+I+ P L+G+D RDQ +D ++E+DGTPNKSK+GANAIL VSL+V +A
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAA 120
Query: 163 AGAKGVPLYKHI 174
A A G+PLY+++
Sbjct: 121 AAALGLPLYRYL 132
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 83.7 bits (207), Expect = 7e-18
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 18/144 (12%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++++ R + G +VEVD+ITD F R A P + +Y A R
Sbjct: 4 IENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPIDENPSLYIAEAHR------------ 51
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAG 164
AV +++I+GP+L+G D +Q +D+ + EIDGT + S IGAN L VS++V +A A
Sbjct: 52 --AVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAAN 109
Query: 165 AKGVPLYKHIQELSGTKELVMPVP 188
+K +PLY +I GT +PVP
Sbjct: 110 SKNMPLYSYI---GGTFTTELPVP 130
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 58.5 bits (142), Expect = 8e-10
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 308 DGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNP 367
D + + L + + + + IE+P DD +A+L+ I + D+ + T
Sbjct: 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVD 158
Query: 368 KRIAEAIQKKSCNGLLLKVNHL 389
EA++ + + L +K +
Sbjct: 159 DA-LEALELGAVDILQIKPTRV 179
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like
protein (AP-like), stonin-1 (also called Stoned B-like
factor). A small family of proteins named stonins has
been characterized as clathrin-dependent AP-2 mu2 chain
related factors, which may act as cargo-specific sorting
adaptors in endocytosis. Stonins include stonin 1 and
stonin 2, which are the only mammalian homologs of
Drosophila stoned B, a presynaptic protein implicated in
neurotransmission and synaptic vesicle (SV) recycling.
They are conserved from C. elegans to humans, but are
not found in prokaryotes or yeasts. This family
corresponds to the mu homology domain of stonin 1, which
is distantly related to the C-terminal domain of mu
chains among AP complexes. Due to the low degree of
sequence conservation of the corresponding binding site,
the mu homology domain of stonin-1 is unable to
recognize tyrosine-based endocytic sorting signals. To
data, little is known about the localization and
function of stonin-1.
Length = 309
Score = 37.1 bits (86), Expect = 0.013
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 14 FSSKLK----QSTPPRSYRPMRVQCSVASTASSSAKVKSV 49
S KL+ Q P Y V+ V T +S +VKS+
Sbjct: 249 LSCKLELGSDQEIPSDWYPFATVEFEVEDTCASGTRVKSL 288
>gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional.
Length = 518
Score = 34.1 bits (78), Expect = 0.13
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 20/199 (10%)
Query: 26 SYRPMRVQCSVA---STASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGAS 82
P R + +A S +++++ +++ G + + L V SGA
Sbjct: 28 DAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAG--ETVLRFTLELLNGMEVSSGAL 85
Query: 83 TGIYEALELRDGDKSVYGGKGVLNAVKNINDILG----PKLVGVDIRDQAEVDAIMLEID 138
+ + RDG L+ + + L P+L+ + RDQ E D+ +
Sbjct: 86 --LSPSHGERDG-----EADATLDPAEYTTEALQNSYFPRLLQLGARDQREFDSTLRAAL 138
Query: 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGG 196
T + +G+ +S+ A A + VPL+++++ L G T +P + G
Sbjct: 139 STSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFG 198
Query: 197 SHAGNN--LAMQEFMILPV 213
+ LA++ + PV
Sbjct: 199 PGNPSTARLALKSVLFSPV 217
>gnl|CDD|234515 TIGR04234, seadorna_RNAP, seadornavirus RNA-directed RNA
polymerase. Members of this protein family are the
seadornavirus VP1 protein, the RNA-directed RNA
polymerase.
Length = 1144
Score = 31.0 bits (70), Expect = 1.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 17 KLKQSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSA 76
L++ +S R + S+ASS+ KS+ AR +S +VD + D+F +
Sbjct: 381 PLERGMLDKSTRLDILFKGGTSSASSTNPHKSIGARYRYNSPFIMDSDVDSKSIDVFDTY 440
Query: 77 VP 78
P
Sbjct: 441 AP 442
>gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. C-terminal domain is TIM
barrel fold, dehydratase-like domain. Manganese is
associated with this domain.
Length = 69
Score = 28.2 bits (64), Expect = 1.6
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360
+ ++ IE+P DD A L+ + I +
Sbjct: 37 PYGLLWIEEPLPPDDLEGLAELRRATPIPIAAG 69
>gnl|CDD|227291 COG4955, COG4955, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 343
Score = 29.8 bits (67), Expect = 2.7
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEG--GFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
R +YHIL G + QDA G P ++ R L + + K G
Sbjct: 19 RSNKSLYHILVGKRSHQTIQDAHLFQQLSLFGLLPLLK--RPSFELFLEKLNKQGILTVT 76
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYK 323
G V A GN +L P G + + QS+G ++
Sbjct: 77 ENGYTVTAK------GNAELEIMLHPFHGRY--TQQSMGQTFQ 111
>gnl|CDD|206172 pfam14002, YniB, YniB-like protein. The YniB-like protein family
includes the E. coli YniB protein, which is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are approximately 180
amino acids in length. This family of proteins are
integral membrane proteins.
Length = 166
Score = 29.2 bits (66), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 186 PVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGI 235
PVP F GS+ G + ++++ VG A RM +V I +GI
Sbjct: 62 PVPDFLNGFSGSNIGFWVI---YLLIFVGLALQASGARMSRQVKFIREGI 108
>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit.
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 1122
Score = 29.7 bits (67), Expect = 3.6
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 9 TARPLFSSKLK----QSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVE 64
P+F S LK Q+ + + + +T +S+ ++ + DS G P ++
Sbjct: 224 NPVPIFVSSLKDPAVQAGLLDALKEEDPALIITTTGFASSNEQADNGETLWDSLGVPVLQ 283
Query: 65 V 65
V
Sbjct: 284 V 284
>gnl|CDD|227591 COG5266, CbiK, ABC-type Co2+ transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 264
Score = 29.0 bits (65), Expect = 3.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVP 78
+++K Q I+ +G TV TD R P
Sbjct: 54 SRLKIFSPMQTINPKGKFTVHQGGKTDYQSRLKEP 88
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 29.3 bits (66), Expect = 4.0
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
IE+P DD L+++ + + V ++ + + + + +
Sbjct: 219 IEEPLPPDDLEGLRELRAATSTPIAAGE-SVYTRWDFRRLLEAGAVDIVQPDLARV 273
>gnl|CDD|151890 pfam11451, DUF3202, Protein of unknown function (DUF3202). This
archaeal family of proteins has no known function.
Length = 67
Score = 26.8 bits (59), Expect = 4.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 230 HILKGIIKEKYGQD-ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK 279
+L ++E G A +G + F+ ++D E ++LL D + AG K
Sbjct: 2 SLLDKTLEEWKGHKVAVGIGGDHSFSGILEDFDEEVILLKDVTDVAGNKAK 52
>gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown.
Length = 341
Score = 29.2 bits (66), Expect = 4.3
Identities = 20/84 (23%), Positives = 31/84 (36%)
Query: 89 LELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGA 148
+E DG G A ++ L L+G D D ++ M + I
Sbjct: 16 IETDDGTVGYANTTGGPVACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAM 75
Query: 149 NAILGVSLSVCRAGAGAKGVPLYK 172
AI V L++ +G P+YK
Sbjct: 76 AAISAVDLALWDLLGKIRGEPVYK 99
>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 28.7 bits (65), Expect = 4.4
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 41 SSSAKVKSVKARQIIDSRGNPTVEVD-LITDDLFRSAVPSGA 81
K++ + R +ID R + +EVD I + + +GA
Sbjct: 152 EVLEKIR--ELRAMIDERLDILIEVDGGINLETIKQLAAAGA 191
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 28.8 bits (64), Expect = 6.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 40 ASSSAKVKSVKARQIIDSRGNP--------TVEVDLITDDLFRSAVPSGASTGIYEALEL 91
AS +AK+K + IID GN V +D + + + +VP GA + E +
Sbjct: 2373 ASINAKIKLNNSNIIIDKNGNKIVISRSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSV 2432
Query: 92 RDGDK 96
+ GDK
Sbjct: 2433 KIGDK 2437
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 28.0 bits (62), Expect = 9.6
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 161 AGAGAKGVP-LYKHIQELSGTKELVM---------PVPAFNVINGGSHAGNNLAMQ-EF- 208
AGA A G P + K +S ++++ P +ING L +
Sbjct: 122 AGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDVTLINGDGKTMQALLLHPNPK 181
Query: 209 MILPVGATSFAEALR 223
M+L G++ AE L
Sbjct: 182 MVLFTGSSRVAEKLA 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,898,789
Number of extensions: 1946785
Number of successful extensions: 1347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 38
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)