RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016156
(394 letters)
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 641 bits (1656), Expect = 0.0
Identities = 226/345 (65%), Positives = 284/345 (82%), Gaps = 5/345 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T LFR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P L+ G+ + +Q ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A + +PLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK+KYG+DA NVGDEGGFAPN+ +N E L L+ +AI+KAGYT KI I
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ +DG YDL+FK P D + ++ LG LY++FVRD+P+VSIEDPFDQDD
Sbjct: 242 GMDVAASEFY-RDGKYDLDFKS-PTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDD 299
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
W++W+ ++V IQ+VGDDL VTNPKRI A+++K+CN LLLKVN
Sbjct: 300 WAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVN 344
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 637 bits (1645), Expect = 0.0
Identities = 206/347 (59%), Positives = 259/347 (74%), Gaps = 6/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V V AR + DSRGNPTVEV+L T+ +FRS VPSGASTG++EALE+RDGDKS + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L+AVKN+ND++ P V +D++DQ VD ++ +DGT NKSK+GANAILGVSL+ RA
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 163 AGAKGVPLYKHIQELSGTK--ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A K VPLYKH+ +LS +K V+PVP NV+NGGSHAG LA+QEFMI P GA +FAE
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALR+GSEVYH LK + K++YG A NVGDEGG APN+Q E L L+ DAI+ AG+ GK+
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
IG+D A+SEFF KDG YDL+FK +D + L+ L DLY ++ +PIVSIEDPF +
Sbjct: 242 KIGLDCASSEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAE 300
Query: 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DDW +W+ + IQ+V DDL VTNPKRIA AI+KK+ + LLLKVN
Sbjct: 301 DDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 634 bits (1637), Expect = 0.0
Identities = 206/351 (58%), Positives = 260/351 (74%), Gaps = 5/351 (1%)
Query: 42 SSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYG 100
S ++ V AR+I+DSRGNPT+EV++ T +FRS VPSGASTG++EA+ELRDGDK YG
Sbjct: 4 GSMSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYG 63
Query: 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCR 160
GKGVL AV+N+N I+GP L+G ++ +QAE+D +M+++DGT NK K+GANAILG S+S+CR
Sbjct: 64 GKGVLKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICR 123
Query: 161 AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A A KG+PLYK++ EL+G KE+ MPVP FNVINGG+HAGN LAMQEFMI P GAT+F E
Sbjct: 124 AAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHE 183
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALRM +E Y LK +IK KYGQDA NVGDEGGFAPNV RE L LL +AI KAGYTGKI
Sbjct: 184 ALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKI 243
Query: 281 NIGMDVAASEFFTKD-GNYDLNFK--KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP 337
I MD AASEF+ ++ YDL K D + V L Y ++ + +PI SIEDP
Sbjct: 244 EIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDP 303
Query: 338 FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
F +DDW++W + Q+VGDDLLVTNP R+ A+ K +CN +L+KVN
Sbjct: 304 FAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVN 354
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 623 bits (1610), Expect = 0.0
Identities = 204/347 (58%), Positives = 264/347 (76%), Gaps = 7/347 (2%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
++ V R+++DSRGNPTVEV++ T+ +FRSAVPSGASTG+YEA ELRDGDK Y GKG
Sbjct: 5 TIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKG 64
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
L AVKN+N+++GP L+G D Q E+D +ML +DGTPNK K+GANAILG S+++ +A A
Sbjct: 65 CLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAA 124
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
AKGVPLY+++ L+GTKEL +PVP FNVINGG HAGN L QEFMI PV ATSF+EALR
Sbjct: 125 AAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALR 184
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283
MGSEVYH L+GIIK+KYGQDA NVGDEGGFAP ++D E L +L +AIE+AG+ GK I
Sbjct: 185 MGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAIC 244
Query: 284 MDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
MD AASE + + Y+L FK + ++A+ L + Y ++ D+PIVSIEDP+DQDD
Sbjct: 245 MDCAASETYDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDD 301
Query: 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++ +A + ++ Q+VGDDL VTN +RI AI+KK+CN LLLK+N
Sbjct: 302 FAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKIN 348
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 620 bits (1601), Expect = 0.0
Identities = 198/356 (55%), Positives = 262/356 (73%), Gaps = 12/356 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+K + AR+I+DSRGNPT+EVD+ T+ +FR+AVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSL 156
GVLNAV+ + + P L+G D DQ +D +M+E +DGT N KSK+GANAILGVS+
Sbjct: 62 GVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSI 121
Query: 157 SVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVG 214
+ CRAGA +KG+PLYK+I L+G ++VMPVP FNVINGG HAGN LA+QEF+I PVG
Sbjct: 122 ACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVG 181
Query: 215 ATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274
A + EA+R GSE YH LK +IK KYG DA NVGDEGGFAPNV E L LL +AI+ A
Sbjct: 182 APNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAA 241
Query: 275 GYTGKINIGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS 333
GY GKI I D AASEF+ + + YDL++K + + + L+ + L ++Y+ +++ +PI+S
Sbjct: 242 GYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIIS 301
Query: 334 IEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+EDPFDQDD++S+++ V Q++GDD+LVTN RI +A++ K+CN LLLKVN
Sbjct: 302 VEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVN 357
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 585 bits (1511), Expect = 0.0
Identities = 193/349 (55%), Positives = 256/349 (73%), Gaps = 15/349 (4%)
Query: 41 SSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSV 98
++K + AR++IDSRGNPTVEV++IT + VPSGASTG +EALELRD +K
Sbjct: 6 DERFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR- 64
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSV 158
+GGKGVL AV+N+N I+ P+++G D R Q E+D IM+E+DGTPNKS++GANAIL VSL+V
Sbjct: 65 FGGKGVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAV 124
Query: 159 CRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218
+A A +PLYK+ L G VMPVP NVINGG HAGN+L +QEFMI+PVGATS
Sbjct: 125 AKAAAATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSI 181
Query: 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG 278
+EA+RMGSEVYH+LK +I EKYG++A NVGDEGGFAP ++ +RE L LLT++++KAGY
Sbjct: 182 SEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYED 241
Query: 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
++ +D AASEF+ KDG Y + KK L+ + L D YK V ++PIVSIEDPF
Sbjct: 242 EVVFALDAAASEFY-KDGYYYVEGKK--------LTREELLDYYKALVDEYPIVSIEDPF 292
Query: 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++D+ +A + +DIQ+VGDDL VTN +R+ + I+ K+ N LLLKVN
Sbjct: 293 HEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVN 341
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 505 bits (1304), Expect = e-179
Identities = 164/350 (46%), Positives = 226/350 (64%), Gaps = 12/350 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+ + V AR+++DSRGNPT+EV++ T+ R VPSGASTG +EA+ELRDGDKS YGG
Sbjct: 12 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 71
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
G AV N+N+I+ ++G D+RDQ +D M+ +DGTPNK K+GANAILGVS++V RA
Sbjct: 72 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 131
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY + L G V+P P N+INGGSH+ +A QEFMILPVGA +F EA
Sbjct: 132 AADYLEIPLYSY---LGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEA 188
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+E++H LK I+K + VGDEGGFAP + +G+ + AIE AGY GK
Sbjct: 189 LRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKD 246
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
+ +G D A+SEF+ ++ K +GA V ++ D +E V +PI++IED D
Sbjct: 247 VFLGFDCASSEFY-DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMD 305
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW W +L + +QLVGDD VTN +A IQ+ + N +L+KVN
Sbjct: 306 ENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 355
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 502 bits (1296), Expect = e-178
Identities = 176/351 (50%), Positives = 230/351 (65%), Gaps = 15/351 (4%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+K+ + R+IIDSRGNPTVE ++ + + +A PSGASTG EALELRDGDKS + G
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGV AV +N + L+G D +DQA +D IM+++DGT NKSK GANAIL VSL+ +A
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 162 GAGAKGVPLYKHIQELSGTKE-LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A AKG+PLY+HI EL+GT MPVP N+INGG HA NN+ +QEFMI PVGA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK 279
A+RMGSEV+H L ++K K G VGDEGG+APN+ N E L ++ +A++ AGY GK
Sbjct: 181 AIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 280 -INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
I + MD AASEF+ KDG Y L +G +++ +E + +PIVSIED
Sbjct: 239 DITLAMDCAASEFY-KDGKYVL-----AGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGL 292
Query: 339 DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
D+ DW +A + IQLVGDDL VTN K + E I+K N +L+K N
Sbjct: 293 DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFN 343
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 498 bits (1284), Expect = e-176
Identities = 160/362 (44%), Positives = 226/362 (62%), Gaps = 18/362 (4%)
Query: 33 QCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALE 90
++ + + +++ V R+IIDSRGNPTVE ++ R PSGASTG +EALE
Sbjct: 15 TENLYFQSMNYLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALE 74
Query: 91 LRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANA 150
LRDGDK +GGKGV AV+NIN + L G+D D VD M++ DGT +KSK GANA
Sbjct: 75 LRDGDKGRFGGKGVTKAVQNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANA 134
Query: 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210
+L VS++ +A A A GVPLY+ L G +PVP N++NGG+HA N + +QEFMI
Sbjct: 135 VLAVSIACAKAAAAALGVPLYRF---LGGLNANRLPVPMMNILNGGAHAANTVDVQEFMI 191
Query: 211 LPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270
+PVGA SF EALR +EV+H L G++K K G A +VGDEGGFAP++ + E + + +A
Sbjct: 192 MPVGAESFREALRQCTEVFHALAGLLKSK-GL-ATSVGDEGGFAPDLASDEEAIEYILEA 249
Query: 271 IEKAGYT-GK-INIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327
++ AGY G+ + MD A+SE+ K G Y L K+ +++ L +K
Sbjct: 250 VKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKR------KFASEELVAHWKSLCE 303
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+PIVSIED D++DW W + + IQLVGDDL VTN +R+ + I+++ N +L+K
Sbjct: 304 RYPIVSIEDGLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIK 363
Query: 386 VN 387
+N
Sbjct: 364 LN 365
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 495 bits (1277), Expect = e-175
Identities = 160/350 (45%), Positives = 223/350 (63%), Gaps = 19/350 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
A + + A +I+DSR NPT+EV + +AVPSGASTG EA+ELRD D YGG
Sbjct: 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGG 62
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N + L+G D R Q E+D IM+E+DGT NK+ +GANAILGVSL+V A
Sbjct: 63 KGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY+++ G MPVP N+INGG+HA NNL QEFMI+PVGA +FAEA
Sbjct: 123 AANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+EV+H LK + + G VGDEGGFAP++ +N L+ +AIE A Y GK
Sbjct: 181 LRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D A+SE + ++G YD + L+++ + D E+ + +P++SIED
Sbjct: 239 IYLALDAASSELY-QNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGLS 289
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW+ W L + +QLVGDD+ VTNP + + I+K N +L+K+N
Sbjct: 290 ENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 493 bits (1272), Expect = e-175
Identities = 158/348 (45%), Positives = 221/348 (63%), Gaps = 19/348 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
++ V+A +++DSRGNPTV+ ++ D + + VPSGASTG EALELRD D+ +GG
Sbjct: 5 LVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDER-FGG 63
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV N+N+ + +++G+D +Q ++D + E+DGT N S +GANA LGVS++ RA
Sbjct: 64 KGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARA 123
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A A G+PLY++ L G ++PVP N+INGG+HA NN+ QEFMI+P G TSF EA
Sbjct: 124 AAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFKEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281
LR E+Y ILK + + +GDEGGFAPN+ +N E + LL I+KAGY ++
Sbjct: 181 LRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVK 238
Query: 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341
I +DVA++EFF KDG Y + K S+++L + Y E +PI SIED ++
Sbjct: 239 IALDVASTEFF-KDGKYHMEGKA--------FSSEALIERYVELCAKYPICSIEDGLAEN 289
Query: 342 DWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
D+ W L + IQLVGDDL VTN + E I KK N +L+K N
Sbjct: 290 DFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN 337
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 62.4 bits (151), Expect = 7e-11
Identities = 59/342 (17%), Positives = 110/342 (32%), Gaps = 72/342 (21%)
Query: 62 TVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN----AVKNINDILGP 117
++ V L+ +D G + ++ S GG+ L + I + P
Sbjct: 52 SISVLLVLED--------GQ-VAHGDCAAVQY---SGAGGRDPLFLAKDFIPVIEKEIAP 99
Query: 118 KLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAI-LGVSLSVCRAGAGAKGVPLYKHIQE 176
KL+G +I + + E D AI G++ ++ A A + V + + I++
Sbjct: 100 KLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRD 156
Query: 177 LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGII 236
+ VP F + + MI ++ + H L +
Sbjct: 157 EYNPGAEINAVPVF-----AQSGDDRYDNVDKMI-----------IKEADVLPHALINNV 200
Query: 237 KEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296
+EK G + E + L D I K+ + D A G
Sbjct: 201 EEKLGLKG-------------EKLLEYVKWLRDRII------KLRVREDYAPIFHIDVYG 241
Query: 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSS 352
F A + E + F + IE P D +D + L++
Sbjct: 242 TIGAAFDVDIKAMADYIQT------LAEAAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAE 294
Query: 353 VD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
+D +LV D+ T + + K+ + + +K L
Sbjct: 295 LDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDL 335
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 54.3 bits (130), Expect = 3e-08
Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 54/288 (18%)
Query: 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPL 170
+ND + P L G D+ ++ + + + G+S ++ A A A G
Sbjct: 93 LNDHIKPLLEGRDVDAFLPNARFFDKL--RIDGNLLHTAVRYGLSQALLDATALASGRLK 150
Query: 171 YKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230
+ + + + +P F G + + MI L+ + H
Sbjct: 151 TEVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMI-----------LKGVDVLPH 194
Query: 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASE 290
L ++EK G + RE + L+D I + + + + +
Sbjct: 195 ALINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSPRYHPTLHIDVYG 241
Query: 291 FFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD----QDDWSSW 346
+ D V A+ + L ++ + P+ IE P D D
Sbjct: 242 TIGLIFDMDP-----------VRCAEYIASL-EKEAQGLPL-YIEGPVDAGNKPDQIRML 288
Query: 347 ASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
++ + +++V D+ + I + SC+ + +K L
Sbjct: 289 TAITKELTRLGSGVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDL 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.005
Identities = 58/416 (13%), Positives = 113/416 (27%), Gaps = 168/416 (40%)
Query: 1 MASSL-----TNPTARPLFSSKL--------KQSTPPRSYRPMRVQCSVASTASS----- 42
A +L T A +F+ L +TP + Y + S S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPISCPLIG 242
Query: 43 ---------SAKVKSVKARQIIDS-RGNPTVEVDLITDDLFRSAVPSGASTG------IY 86
+AK+ ++ +G L+T + + + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-----AVAIAETDSWESFFVSVR 297
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNK--- 143
+A+ + + G A N + L P ++ + + V + ML I +
Sbjct: 298 KAITV-----LFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 144 SKIGA-NAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202
+ N+ L P K + E+S ++NG +
Sbjct: 351 DYVNKTNSHL----------------PAGKQV-EIS-------------LVNGAKN---- 376
Query: 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGF---APNVQD 259
+++ + ++L + K K G D + F
Sbjct: 377 ------LVV----SGPPQSLY--GLNLTLRK--AKAPSGLDQSRIP----FSERKLKFS- 417
Query: 260 NREGLV--------LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAH 311
NR L LL A + I D+ +
Sbjct: 418 NR-FLPVASPFHSHLLVPASDL--------INKDLVKNNV-------------------- 448
Query: 312 VLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNP 367
+A+ + P+ +D D S L S+ ++V D ++ P
Sbjct: 449 SFNAKDIQ---------IPV------YDTFDGSDLRVLSGSISERIV--DCIIRLP 487
Score = 36.6 bits (84), Expect = 0.016
Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 63/186 (33%)
Query: 33 QCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
Q A T A + +K++ +I + D F A G S G Y AL
Sbjct: 1733 Q--PALTLMEKAAFEDLKSKGLIPA------------DATF--A---GHSLGEYAAL--- 1770
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLV---GVDIRDQAEVDAIMLEIDGTPNKSKIGAN 149
V+ +I ++ ++V G+ ++ D + +S G
Sbjct: 1771 -----ASLA-DVM----SIESLV--EVVFYRGMTMQVAVPRDEL--------GRSNYGMI 1810
Query: 150 AILGVSLSVCRAGAGAKGVPLYKHIQELSG-TKELVMPVPAFN------VINGGSHAGNN 202
AI ++ + + V ++ + T LV V +N V AG+
Sbjct: 1811 AINPGRVAASFSQEALQYV-----VERVGKRTGWLVEIV-NYNVENQQYVA-----AGDL 1859
Query: 203 LAMQEF 208
A+
Sbjct: 1860 RALDTV 1865
Score = 31.6 bits (71), Expect = 0.59
Identities = 49/248 (19%), Positives = 73/248 (29%), Gaps = 80/248 (32%)
Query: 177 LS-GTKELVMPVPAFNVINGGSHAGNNLAMQ---EF-MILPVGATSFAEALRMGSEV--- 228
LS G+ E V+ VP S +A Q +F ILP FA +
Sbjct: 11 LSHGSLEHVLLVPT------ASFF---IASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 229 -----Y--------------HILKGIIKE---KY--GQD--ACNVGDEGGFAPNVQDNRE 262
Y +L + E Y G D A A + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA--------LAAKLLQEND 113
Query: 263 GLVLLTDAIEKAGYTGKINIG---MDVAASEFFT--KDGNYDL--NFKKQPNDGAHV--L 313
++ T + K T +I + S F +GN L F Q N + L
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 314 SAQSLGDLYKEFVRDFPIVS-------IEDPFDQD-------DWSSWASLQSSVDIQLVG 359
+ L Y V D S I D + + W L++ +
Sbjct: 174 --RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSNTP--D 227
Query: 360 DDLLVTNP 367
D L++ P
Sbjct: 228 KDYLLSIP 235
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 36.5 bits (85), Expect = 0.011
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
F ++ IE P +++D A L + + D+ +V+ + A+AI+ + + +K
Sbjct: 207 PFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVS-ARAAADAIKLGAVQIVNIKP 264
Score = 30.3 bits (69), Expect = 1.2
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 25/109 (22%)
Query: 45 KVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
K+ V+ R++ S G + + +T G E + +
Sbjct: 2 KLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG----------EGWGECVTMA 51
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
+Y + A + L P L+ + A+V ++ + G
Sbjct: 52 G---PLYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHR 97
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 35.7 bits (83), Expect = 0.021
Identities = 55/355 (15%), Positives = 96/355 (27%), Gaps = 102/355 (28%)
Query: 45 KVKSVKARQI--------IDSRGNPTVE---VDLITDDLFRSAVPSGASTGIYEALELRD 93
K+++ + S G T + + ++ + G G+ E
Sbjct: 9 KIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGE--------GV-QGVAEGTMEAR 59
Query: 94 GDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILG 153
+Y + + A+ + P ++G + V + G A
Sbjct: 60 P---MYREETIAGALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-------ARAM 109
Query: 154 VSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPV 213
V ++ A GVPL L G KE V + I
Sbjct: 110 VEMAAWDLWARTLGVPLGTL---LGGHKE---QVEVGVSL---------------GIQAD 148
Query: 214 GATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEK 273
+ R + Y +K +K K G D V A +
Sbjct: 149 EQATVDLVRRHVEQGYRRIK--LKIKPGWDVQPV---------------------RATRE 185
Query: 274 AGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS 333
A I + +D N + A L L ++ +
Sbjct: 186 AF--PDIRLTVDA--------------------NSAYTLADAGRLRQL-----DEYDLTY 218
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNH 388
IE P DD A L + L D+ + + +A+ + + LKV
Sbjct: 219 IEQPLAWDDLVDHAELARRIRTPLCLDESVAS-ASDARKALALGAGGVINLKVAR 272
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 35.3 bits (82), Expect = 0.026
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ I IE P +++ + L +S ++ D+ + + ++ + + LK
Sbjct: 217 LGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIEC-VEDAFNLAREGAASVFALK 275
Query: 386 VNH 388
+
Sbjct: 276 IAK 278
Score = 29.5 bits (67), Expect = 1.7
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 24/105 (22%)
Query: 42 SSAKVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEAL 89
++ ++S++ + + V + L D G G+ E+
Sbjct: 4 HASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCAD--------GI-EGLGES- 53
Query: 90 ELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIM 134
YG + + NI+ + P L+G D + +
Sbjct: 54 --TTIGGLAYGNESPDSIKTNIDRFVAPLLIGQDASNINAAMLRL 96
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 35.4 bits (82), Expect = 0.028
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ + IE P +DDW A LQ+S+ + D+ + + + + + + L +K
Sbjct: 214 AYDLQFIEQPLPEDDWFDLAKLQASLRTPVCLDESVRS-VRELKLTARLGAARVLNVKP 271
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 35.0 bits (81), Expect = 0.032
Identities = 8/61 (13%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + + +E P + ++ + L + ++ D+ L + E + + + LK
Sbjct: 211 LEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESLSS-LSSAFELARDHAVDAFSLK 269
Query: 386 V 386
+
Sbjct: 270 L 270
Score = 28.4 bits (64), Expect = 4.2
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIM 134
+G + I++ L P LVG D + ++ +M
Sbjct: 55 WGSESAETIKVIIDNYLAPLLVGKDASNLSQARVLM 90
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 35.0 bits (81), Expect = 0.033
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + IE P D ++ L ++ ++ D+ + T + Q+ LK
Sbjct: 216 LAAMGVDLIEQPVSAHDNAALVRLSQQIETAILADEAVAT-AYDGYQLAQQGFTGAYALK 274
Query: 386 V 386
+
Sbjct: 275 I 275
Score = 29.6 bits (67), Expect = 1.7
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 41 SSSAKVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEA 88
S +A V+ +++ + S V V L D G GI EA
Sbjct: 2 SLTATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSD--------GI-CGIGEA 52
Query: 89 LELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGA 148
+ YG + I L P L G + ++A+ ++G I
Sbjct: 53 TTIGG---LSYGVESPEAISSAITHYLTPLLKGQPADN---LNALTARMNGA-----IKG 101
Query: 149 N--AILGVSLSVCRAGAGAKGVPLYK 172
N A + ++ A A G+P+
Sbjct: 102 NTFAKSAIETALLDAQGKALGLPVSA 127
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 35.0 bits (81), Expect = 0.041
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
V F IE P + A L+ D+ L+ D+ + P+ + A + C+G+ +K
Sbjct: 215 VAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYG-PEDMVRAAHEGICDGVSIK 273
Query: 386 VNH 388
+
Sbjct: 274 IMK 276
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 34.6 bits (80), Expect = 0.047
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ D ++ E+ DD S L +D+ + D+ + T P + + S + +K
Sbjct: 208 MADLDLLFAEELCPADDVLSRRRLVGQLDMPFIADESVPT-PADVTREVLGGSATAISIK 266
Query: 386 V 386
Sbjct: 267 T 267
Score = 30.7 bits (70), Expect = 0.85
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 45 KVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
K+ ++ A + G V V + TDD G G+ EA
Sbjct: 2 KIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDD--------GI-VGVAEAPPR- 51
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
G+ V I P L+G+ + ++ M G P
Sbjct: 52 ----PFTYGETQTGIVAVIEQYFAPALIGLTLTEREVAHTRMARTVGNP 96
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 34.6 bits (80), Expect = 0.051
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ + IE PF DD+ A LQ + ++ D+ + + K A+ SC + LK+
Sbjct: 226 HYQLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRS-LKDCQVALALGSCRSINLKI 283
Score = 32.2 bits (74), Expect = 0.24
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 24/109 (22%)
Query: 45 KVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
++S++ Q+ + S G + + G G E +
Sbjct: 21 NIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQ--------GN-QGFGELVAFE 71
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
D Y + ++ I L P L+ I EV I E+ G
Sbjct: 72 QPD---YVQETLVTERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHW 117
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 34.2 bits (79), Expect = 0.062
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ + IE PF D+ A LQ + ++ D+ + + K + +A SC + LK+
Sbjct: 226 QYDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENIRS-VKDVEQAHSIGSCRAINLKL 283
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 98 VYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
Y + + +A+ I + L P L IR E+ + I G
Sbjct: 74 DYTEETLSSAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNE 117
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 33.8 bits (78), Expect = 0.077
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ + IE P DD A LQ + + D+ L ++ +AI+ + +K
Sbjct: 206 ELRLDYIEQPLAYDDLLDHAKLQRELSTPICLDESLTG-AEKARKAIELGAGRVFNVKP 263
Score = 30.3 bits (69), Expect = 1.0
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
Y + V A + ++ P+++G D+ + + + G P
Sbjct: 55 YREETVAGARYLLEEVFLPRVLGRDLPNPEALREALAPFRGNP 97
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 32.6 bits (75), Expect = 0.20
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + IE P +++ + L + + ++ D+ L T + + +S + LK
Sbjct: 211 LEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLST-LASAFDLARDRSVDVFSLK 269
Query: 386 VNH 388
+ +
Sbjct: 270 LCN 272
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 32.2 bits (74), Expect = 0.25
Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + E P DD + + ++ ++ D+ + T P ++ ++ + + LK
Sbjct: 219 EAGVELFEQPTPADDLETLREITRRTNVSVMADESVWT-PAEALAVVKAQAADVIALKTT 277
Query: 388 H 388
Sbjct: 278 K 278
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 31.2 bits (71), Expect = 0.47
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
++ IE+PF + + D+ T+ I I+ + ++LK
Sbjct: 190 REQVLYIEEPFKDISM--LDEVADGTIPPIALDE-KATSLLDIINLIELYNVKVVVLKP 245
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 31.2 bits (71), Expect = 0.52
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + E P + L ++ + D+ L++ + + N +K
Sbjct: 227 MDAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLIS-SRVAEFVAKLGISNIWNIK 285
Query: 386 V 386
+
Sbjct: 286 I 286
Score = 28.9 bits (65), Expect = 3.1
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 25/108 (23%)
Query: 39 TASSSAKVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIY 86
+ + SA++ V +I S G ++ V++ DL G
Sbjct: 2 SLTESARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIREGDL----------FGYG 51
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIM 134
E+ + Y G+ + + + L P ++G + E + ++
Sbjct: 52 ESAPFEEP---FYLGETLETTKVILKNHLLPMILGKEPLSIEEFNHLI 96
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 30.4 bits (69), Expect = 0.89
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + + IE P D A L+ V + D+ + I K + +GL++K
Sbjct: 212 LEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQE-LHDLLAIINKGAADGLMIK 270
Query: 386 VNH 388
Sbjct: 271 TQK 273
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 30.1 bits (68), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360
F + SIE P Q WS A+L ++ + + D
Sbjct: 233 QFHLHSIEQPIRQHQWSEMAALCANSPLAIALD 265
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
I IE P DD + A ++S D+ L+ D+ L + + + + I+ ++ + + +K+
Sbjct: 211 HLNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKS-SREMRQIIKLEAADKVNIKLM 269
Query: 388 H 388
Sbjct: 270 K 270
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase,
PSI, protein structure initiative; 1.42A {Synechococcus
elongatus} PDB: 3h7v_A
Length = 332
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ I +E P D W + SL +V + D+ +V+ + + + ++K
Sbjct: 189 NGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDESVVS-AAEVQRWVDRGWPGFFVIKT 246
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.8
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 172 KHIQELSGTKELVMP--VPAFNVING 195
+ +++L + +L PA I
Sbjct: 20 QALKKLQASLKLYADDSAPAL-AIKA 44
Score = 28.4 bits (62), Expect = 2.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 19 KQSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVE 64
KQ+ ++Q S+ A SA ++KA T+E
Sbjct: 19 KQALK-------KLQASLKLYADDSAPALAIKA----------TME 47
>2rdc_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Length = 153
Score = 28.2 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGM 284
H+ I ++YG++ G EGG P + NR D I A + G++ G+
Sbjct: 100 HVFNRYIVKEYGEELKEAGIEGGIFPKPEANR-------DRIAIADWAGELLTGI 147
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 28.6 bits (64), Expect = 3.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
FR VP +T + + SV G + V+ A+K I + P ++G+
Sbjct: 56 FREPVPL-QTTAMDQ-------VSSVMGADENVVEALKTICERQNPSVIGL 98
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 28.6 bits (64), Expect = 4.6
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
F+ + S + E D +V+GG + ++N + + P+++ V
Sbjct: 105 FKEPIAC-VSDSMTE-------DAAVFGGNNNMNLGLQNASALYKPEIIAV 147
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 28.0 bits (63), Expect = 5.5
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 51 ARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
A + + + +V V + D GA G EA V G + +
Sbjct: 22 ALRTVYTA--ESVIVRITYDS--------GA-VGWGEAPPT-----LVITGDSMDSIESA 65
Query: 111 INDILGPKLVGVDIRDQAEVDAIM 134
I+ +L P L+G + + +
Sbjct: 66 IHHVLKPALLGKSLAGYEAILHDI 89
Score = 27.6 bits (62), Expect = 7.2
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
I +E P +DD + + + D ++ D+ + T P++ E +Q +S + + +K+
Sbjct: 211 AGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFT-PRQAFEVLQTRSADLINIKL 269
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 27.9 bits (63), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 110 NINDILGP--KLVGVDIRDQAEVDAIMLEIDG 139
N+ ILG +LV DI D VD + + D
Sbjct: 47 NLEAILGDRVELVVGDIADAELVDKLAAKADA 78
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.8 bits (62), Expect = 7.0
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
FR V S + E D +V+GG + + + ++N P ++ V
Sbjct: 107 FREPVSC-VSDSMTE-------DAAVFGGQQNMKDGLQNCKATYKPDMIAV 149
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.5 bits (62), Expect = 7.3
Identities = 2/33 (6%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 109 KNINDILGPKLVGVDIRDQAEVDAIMLE--IDG 139
+ + + G ++ + D ++
Sbjct: 59 EVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTH 91
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 27.2 bits (61), Expect = 9.4
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ D+ I +E P + D + S V+ ++ D+ + E ++K + + + +K
Sbjct: 206 LADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFD-AQDALELVKKGTVDVINIK 264
Query: 386 V 386
+
Sbjct: 265 L 265
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 27.3 bits (61), Expect = 9.5
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
F+ + +++ E SV+GG + AVKNI + P ++ V
Sbjct: 60 FKEPAMA-STSSFTE-------GASVFGGGSNIKTAVKNIFSLYNPDIIAV 102
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 27.5 bits (61), Expect = 9.7
Identities = 10/52 (19%), Positives = 13/52 (25%), Gaps = 8/52 (15%)
Query: 237 KEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
KE+YG L + A AG G + A
Sbjct: 293 KERYGDL-----SSTASGCQTYS---ALYAYSIAAALAGGPGAPYDDVQNKA 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,995,010
Number of extensions: 373592
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 74
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)