RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016156
(394 letters)
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 242 bits (618), Expect = 1e-78
Identities = 121/204 (59%), Positives = 151/204 (74%), Gaps = 1/204 (0%)
Query: 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQD 243
V+PVP NV+NGGSHAG LA+QEFMI P GA +FAEALR+GSEVYH LK + K++YG
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 244 ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFK 303
A NVGDEGG APN+Q E L L+ DAI+ AG+ GK+ IG+D A+SEFF KDG YDL+FK
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFF-KDGKYDLDFK 122
Query: 304 KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363
+D + L+ L DLY ++ +PIVSIEDPF +DDW +W+ + IQ+V DDL
Sbjct: 123 NPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLT 182
Query: 364 VTNPKRIAEAIQKKSCNGLLLKVN 387
VTNPKRIA AI+KK+ + LLLKVN
Sbjct: 183 VTNPKRIATAIEKKAADALLLKVN 206
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 233 bits (595), Expect = 4e-75
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 7/208 (3%)
Query: 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQD 243
V+P P N+INGGSH+ +A QEFMILPVGA +F EALR G+E++H LK I+K + +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLE- 62
Query: 244 ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG--KINIGMDVAASEFFTKDGNYDLN 301
VGDEGGFAP + +G+ + AIE AGY + +G D A+SEF+ +
Sbjct: 63 -TAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFY-DKERKVYD 120
Query: 302 FKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVG 359
+ K +GA V ++ D +E V +PI++IED D++DW W +L + +QLVG
Sbjct: 121 YTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVG 180
Query: 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DD VTN +A IQ+ + N +L+KVN
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKVN 208
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 229 bits (586), Expect = 9e-74
Identities = 139/206 (67%), Positives = 174/206 (84%), Gaps = 2/206 (0%)
Query: 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYG 241
+L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+R+G+EVYH LKG+IK+KYG
Sbjct: 2 DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYG 61
Query: 242 QDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLN 301
+DA NVGDEGGFAPN+ +N E L L+ +AI+KAGYT KI IGMDVAASEF+ +DG YDL+
Sbjct: 62 KDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFY-RDGKYDLD 120
Query: 302 FKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD 361
FK P D + ++ LG LY++FVRD+P+VSIEDPFDQDDW++W+ ++V IQ+VGDD
Sbjct: 121 FKS-PTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDD 179
Query: 362 LLVTNPKRIAEAIQKKSCNGLLLKVN 387
L VTNPKRI A+++K+CN LLLKVN
Sbjct: 180 LTVTNPKRIERAVEEKACNCLLLKVN 205
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 220 bits (561), Expect = 5e-70
Identities = 123/210 (58%), Positives = 153/210 (72%), Gaps = 6/210 (2%)
Query: 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY 240
KEL +PVP FNVINGG HAGN L QEFMI PV ATSF+EALRMGSEVYH L+GIIK+KY
Sbjct: 1 KELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKY 60
Query: 241 GQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEF-FTKDGNYD 299
GQDA NVGDEGGFAP ++D E L +L +AIE+AG+ GK I MD AASE K Y+
Sbjct: 61 GQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYN 120
Query: 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQL 357
L FK ++A+ L + Y ++ D+PIVSIEDP+DQDD++ +A + ++ Q+
Sbjct: 121 LTFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQI 177
Query: 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
VGDDL VTN +RI AI+KK+CN LLLK+N
Sbjct: 178 VGDDLTVTNTERIKMAIEKKACNSLLLKIN 207
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 213 bits (544), Expect = 2e-67
Identities = 85/209 (40%), Positives = 118/209 (56%), Gaps = 8/209 (3%)
Query: 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY 240
+ MPVP N+INGG HA NN+ +QEFMI PVGA + EA+RMGSEV+H L ++K K
Sbjct: 2 GKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG 61
Query: 241 GQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300
VGDEGG+APN+ N E L ++ +A++ AGY +G D+ + Y
Sbjct: 62 MN--TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE----LGKDITLAMDCAASEFYKD 115
Query: 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358
+G +++ +E + +PIVSIED D+ DW +A + IQLV
Sbjct: 116 GKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLV 175
Query: 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
GDDL VTN K + E I+K N +L+K N
Sbjct: 176 GDDLFVTNTKILKEGIEKGIANSILIKFN 204
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 141
Score = 173 bits (441), Expect = 3e-54
Identities = 85/139 (61%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V V AR + DSRGNPTVEV+L T+ +FRS VPSGASTG++EALE+RDGDKS + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L+AVKN+ND++ P V +D++DQ VD ++ +DGT NKSK+GANAILGVSL+ RA
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 163 AGAKGVPLYKHIQELSGTK 181
A K VPLYKH+ +LS +K
Sbjct: 122 AAEKNVPLYKHLADLSKSK 140
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 171 bits (434), Expect = 3e-53
Identities = 82/137 (59%), Positives = 109/137 (79%), Gaps = 1/137 (0%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
++ V R+++DSRGNPTVEV++ T+ +FRSAVPSGASTG+YEA ELRDGDK Y GKG
Sbjct: 3 TIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKG 62
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
L AVKN+N+++GP L+G D Q E+D +ML +DGTPNK K+GANAILG S+++ +A A
Sbjct: 63 CLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAA 122
Query: 164 GAKGVPLYKHIQELSGT 180
AKGVPLY+++ L+GT
Sbjct: 123 AAKGVPLYRYLASLAGT 139
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Length = 139
Score = 170 bits (433), Expect = 5e-53
Identities = 78/139 (56%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+K+ + R+IIDSRGNPTVE ++ + + +A PSGASTG EALELRDGDKS + G
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGV AV +N + L+G D +DQA +D IM+++DGT NKSK GANAIL VSL+ +A
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 162 GAGAKGVPLYKHIQELSGT 180
A AKG+PLY+HI EL+GT
Sbjct: 121 AAAAKGMPLYEHIAELNGT 139
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 168 bits (427), Expect = 4e-52
Identities = 71/133 (53%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGG 101
+ + V AR+++DSRGNPT+EV++ T+ R VPSGASTG +EA+ELRDGDKS YGG
Sbjct: 2 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 61
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
G AV N+N+I+ ++G D+RDQ +D M+ +DGTPNK K+GANAILGVS++V RA
Sbjct: 62 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 162 GAGAKGVPLYKHI 174
A +PLY ++
Sbjct: 122 AADYLEIPLYSYL 134
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 139
Score = 167 bits (425), Expect = 7e-52
Identities = 87/137 (63%), Positives = 110/137 (80%), Gaps = 3/137 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T LFR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P L+ G+ + +Q ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 163 AGAKGVPLYKHIQELSG 179
A + +PLY+HI +L+G
Sbjct: 122 AAERELPLYRHIAQLAG 138
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
vulgaris) [TaxId: 6707]}
Length = 139
Score = 156 bits (396), Expect = 2e-47
Identities = 83/136 (61%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
+ V AR I DSRGNPTVEVDL T LFR+AVPSGASTG++EALE+RDGDKS Y GK V
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
NAVKN+ND++ P+++ G+ + Q E D M ++DGT NKS +GANAILGVSL++C+AG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 163 AGAKGVPLYKHIQELS 178
A G+PLY+HI L+
Sbjct: 122 AAELGIPLYRHIANLA 137
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 94.6 bits (235), Expect = 5e-23
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 56/216 (25%)
Query: 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDA 244
+P F G + + MIL G AL + ++
Sbjct: 5 EAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE----------- 41
Query: 245 CNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKK 304
+G +G E + L+D I + + + + + Y
Sbjct: 42 EKLGFKGEKLR------EYVRWLSDRILSLRSSPRYHPTLHI---------DVYGTIGLI 86
Query: 305 QPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDPFD----QDDWSSWASLQSSVD---- 354
D + ++ + IE P D D ++ +
Sbjct: 87 FDMD------PVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGS 140
Query: 355 -IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
+++V D+ T + I + SC+ + +K L
Sbjct: 141 GVKIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDL 175
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 75.0 bits (184), Expect = 5e-16
Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 32/194 (16%)
Query: 207 EFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQ--DACNVGDEGGFAPNVQDNREGL 264
E +PV A S G + Y + +I ++ A E + E +
Sbjct: 3 EINAVPVFAQS-------GDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYV 55
Query: 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324
L D I K + + D+ + E
Sbjct: 56 KWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK------------AMADYIQTLAE 103
Query: 325 FVRDFPIVSIEDPFDQDDWSSWASLQSSV---------DIQLVGDDLLVTNPKRIAEAIQ 375
+ F + IE P D +D + D +LV D+ + +
Sbjct: 104 AAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADE-WCNTVEDVKFFTD 161
Query: 376 KKSCNGLLLKVNHL 389
K+ + + +K L
Sbjct: 162 NKAGHMVQIKTPDL 175
>d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.7 bits (59), Expect = 3.6
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAAS 289
+ G + + G+ D+ G + D + + G +
Sbjct: 86 LEVPGHLP--------EGTESHGWFNIHGDSPIGGHIKKDNCAAITFVDRGFHGRRSCSV 137
Query: 290 EFFTKDGN 297
F G
Sbjct: 138 WFMNAAGG 145
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 26.9 bits (59), Expect = 4.2
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 8/42 (19%)
Query: 192 VINGGSHAGNNLAMQEFMILPVGATS--------FAEALRMG 225
+ GG A + G F E +R
Sbjct: 179 EVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNC 220
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 26.7 bits (59), Expect = 5.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 276 YTGKINIGMDVAASEFFTKDGNY 298
Y K ++ D+ S F GN
Sbjct: 222 YEFKADVSYDLTLSGFLRWGGNA 244
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 26.6 bits (58), Expect = 5.8
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
FR V S + E D +V+GG + + + ++N P ++ V
Sbjct: 106 FREPVSC-VSDSMTE-------DAAVFGGQQNMKDGLQNCKATYKPDMIAV 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,419,280
Number of extensions: 65756
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 20
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)