Query 016157
Match_columns 394
No_of_seqs 454 out of 2715
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1331 Predicted methyltransf 100.0 5.9E-43 1.3E-47 326.7 16.3 285 82-394 5-290 (293)
2 COG2226 UbiE Methylase involve 99.9 2.6E-23 5.7E-28 194.1 12.5 134 88-224 10-161 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.6E-22 3.5E-27 189.8 8.7 135 87-224 5-158 (233)
4 PLN02233 ubiquinone biosynthes 99.9 9.5E-21 2.1E-25 181.0 16.1 134 88-224 32-187 (261)
5 KOG1540 Ubiquinone biosynthesi 99.9 3.9E-21 8.4E-26 177.2 12.1 153 69-224 39-219 (296)
6 PLN02396 hexaprenyldihydroxybe 99.7 1.9E-17 4.2E-22 162.2 12.6 99 121-222 130-238 (322)
7 TIGR02752 MenG_heptapren 2-hep 99.7 2.6E-17 5.7E-22 153.9 13.0 132 88-222 4-154 (231)
8 PF13489 Methyltransf_23: Meth 99.7 2.1E-17 4.5E-22 144.8 10.9 113 104-222 3-118 (161)
9 PF08241 Methyltransf_11: Meth 99.7 1.2E-17 2.6E-22 132.9 7.9 88 127-217 1-95 (95)
10 PRK05785 hypothetical protein; 99.7 2.9E-17 6.4E-22 153.7 11.5 122 87-212 7-140 (226)
11 PRK10258 biotin biosynthesis p 99.7 5.5E-17 1.2E-21 153.8 12.1 133 87-223 5-144 (251)
12 PRK14103 trans-aconitate 2-met 99.7 4.9E-17 1.1E-21 154.7 10.4 97 121-221 28-128 (255)
13 PRK11036 putative S-adenosyl-L 99.7 6.6E-17 1.4E-21 153.9 9.9 127 94-223 5-153 (255)
14 PLN02244 tocopherol O-methyltr 99.7 1.8E-16 4E-21 157.0 12.9 99 121-222 117-226 (340)
15 PF07021 MetW: Methionine bios 99.6 2.3E-16 4.9E-21 141.6 6.2 144 114-265 5-156 (193)
16 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.1E-16 8.8E-21 144.0 7.0 100 122-224 59-166 (243)
17 PF12847 Methyltransf_18: Meth 99.6 1.2E-15 2.6E-20 126.1 8.2 97 122-219 1-111 (112)
18 PTZ00098 phosphoethanolamine N 99.6 5.4E-15 1.2E-19 141.5 13.3 104 119-223 49-160 (263)
19 PRK15451 tRNA cmo(5)U34 methyl 99.6 4.1E-15 8.9E-20 141.0 12.1 98 120-220 54-165 (247)
20 PF13847 Methyltransf_31: Meth 99.6 2.4E-15 5.3E-20 131.8 9.1 97 121-221 2-112 (152)
21 KOG4300 Predicted methyltransf 99.6 4.4E-15 9.6E-20 133.3 10.8 130 88-224 46-187 (252)
22 PRK11207 tellurite resistance 99.6 1.3E-14 2.8E-19 133.0 12.6 108 109-219 18-134 (197)
23 PRK01683 trans-aconitate 2-met 99.6 1.1E-14 2.3E-19 138.6 11.9 98 120-221 29-132 (258)
24 TIGR00740 methyltransferase, p 99.6 1E-14 2.2E-19 137.5 10.7 99 120-221 51-163 (239)
25 TIGR00477 tehB tellurite resis 99.6 2.6E-14 5.6E-19 130.8 12.4 108 111-221 20-135 (195)
26 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.2E-14 2.6E-19 143.1 10.9 137 81-220 64-216 (340)
27 TIGR03587 Pse_Me-ase pseudamin 99.6 2.3E-14 4.9E-19 132.1 11.4 104 113-220 34-143 (204)
28 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.8E-14 6.2E-19 132.3 11.9 130 91-223 3-156 (213)
29 TIGR02072 BioC biotin biosynth 99.6 2.1E-14 4.5E-19 133.9 10.7 99 122-223 34-139 (240)
30 PF13649 Methyltransf_25: Meth 99.5 5.5E-15 1.2E-19 120.5 5.4 87 126-213 1-101 (101)
31 PRK15068 tRNA mo(5)U34 methylt 99.5 2.8E-14 6E-19 140.4 11.1 107 111-222 112-229 (322)
32 PRK11873 arsM arsenite S-adeno 99.5 2.8E-14 6.1E-19 136.9 10.4 102 118-222 73-186 (272)
33 PLN02336 phosphoethanolamine N 99.5 3.4E-14 7.3E-19 146.9 11.5 101 120-223 264-373 (475)
34 PRK12335 tellurite resistance 99.5 3.8E-14 8.3E-19 137.3 11.0 107 111-220 110-224 (287)
35 PRK06202 hypothetical protein; 99.5 6.3E-14 1.4E-18 131.5 12.1 112 109-223 47-170 (232)
36 PF08242 Methyltransf_12: Meth 99.5 4.1E-15 8.9E-20 120.6 3.4 86 127-215 1-99 (99)
37 KOG1270 Methyltransferases [Co 99.5 3.1E-14 6.7E-19 132.5 8.4 96 123-224 90-200 (282)
38 PRK00216 ubiE ubiquinone/menaq 99.5 1.5E-13 3.3E-18 128.3 12.9 132 87-222 9-161 (239)
39 TIGR00452 methyltransferase, p 99.5 8.5E-14 1.8E-18 136.0 10.9 98 121-222 120-228 (314)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.9E-13 4.1E-18 126.2 11.7 128 92-222 2-146 (223)
41 smart00138 MeTrc Methyltransfe 99.5 6.2E-14 1.3E-18 134.2 8.6 97 121-218 98-241 (264)
42 COG4106 Tam Trans-aconitate me 99.5 9.6E-14 2.1E-18 125.7 8.0 119 102-225 11-135 (257)
43 PRK08317 hypothetical protein; 99.5 3.4E-13 7.3E-18 125.5 12.1 100 119-221 16-126 (241)
44 PRK06922 hypothetical protein; 99.5 2.5E-13 5.5E-18 141.9 12.1 107 117-223 413-541 (677)
45 PRK13255 thiopurine S-methyltr 99.5 5.6E-13 1.2E-17 124.1 12.3 132 88-222 3-158 (218)
46 TIGR03438 probable methyltrans 99.5 9.5E-13 2.1E-17 128.4 14.0 108 116-224 57-182 (301)
47 smart00828 PKS_MT Methyltransf 99.4 3.6E-13 7.9E-18 125.3 10.4 93 125-221 2-106 (224)
48 PF03848 TehB: Tellurite resis 99.4 4.3E-13 9.2E-18 121.8 10.1 109 110-221 19-135 (192)
49 COG2230 Cfa Cyclopropane fatty 99.4 8E-13 1.7E-17 126.0 12.3 102 119-224 69-181 (283)
50 PF02353 CMAS: Mycolic acid cy 99.4 1.6E-13 3.6E-18 131.7 7.7 103 119-225 59-172 (273)
51 PRK00107 gidB 16S rRNA methylt 99.4 1.6E-12 3.4E-17 118.2 13.6 96 118-221 41-147 (187)
52 KOG1541 Predicted protein carb 99.4 7.1E-13 1.5E-17 120.3 10.8 103 123-225 51-166 (270)
53 TIGR01983 UbiG ubiquinone bios 99.4 9.4E-13 2E-17 122.3 12.0 97 122-221 45-151 (224)
54 TIGR02081 metW methionine bios 99.4 7.5E-13 1.6E-17 120.8 10.3 101 113-219 4-109 (194)
55 TIGR02021 BchM-ChlM magnesium 99.4 8.8E-13 1.9E-17 122.5 10.9 101 113-217 45-156 (219)
56 PRK11705 cyclopropane fatty ac 99.4 7E-13 1.5E-17 133.3 10.4 101 119-223 164-271 (383)
57 KOG2361 Predicted methyltransf 99.4 1.1E-12 2.3E-17 120.8 10.6 136 87-224 35-188 (264)
58 PRK11088 rrmA 23S rRNA methylt 99.4 6.7E-13 1.5E-17 127.6 9.3 91 122-222 85-184 (272)
59 PF05401 NodS: Nodulation prot 99.4 7.9E-13 1.7E-17 119.2 9.0 100 121-221 42-148 (201)
60 COG4976 Predicted methyltransf 99.4 2.9E-13 6.3E-18 123.5 4.4 138 85-225 81-231 (287)
61 PLN02336 phosphoethanolamine N 99.4 4.2E-12 9E-17 131.4 11.8 100 122-222 37-145 (475)
62 TIGR00138 gidB 16S rRNA methyl 99.3 1.3E-11 2.8E-16 111.7 12.9 90 122-219 42-142 (181)
63 TIGR02469 CbiT precorrin-6Y C5 99.3 9.2E-12 2E-16 104.1 11.0 95 120-220 17-123 (124)
64 PF08003 Methyltransf_9: Prote 99.3 8.3E-12 1.8E-16 119.4 11.0 135 108-247 102-257 (315)
65 PRK11188 rrmJ 23S rRNA methylt 99.3 7.4E-12 1.6E-16 115.9 10.1 109 112-224 41-170 (209)
66 PRK13256 thiopurine S-methyltr 99.3 2E-11 4.3E-16 113.8 12.8 134 87-223 8-167 (226)
67 PLN02232 ubiquinone biosynthes 99.3 5.7E-12 1.2E-16 111.7 8.6 76 146-224 1-86 (160)
68 PRK00121 trmB tRNA (guanine-N( 99.3 3.1E-12 6.7E-17 117.7 7.0 100 122-221 40-158 (202)
69 KOG3010 Methyltransferase [Gen 99.3 4.2E-12 9.1E-17 117.0 7.0 119 99-221 9-139 (261)
70 PLN02585 magnesium protoporphy 99.3 1.7E-11 3.7E-16 120.0 10.9 129 84-218 86-248 (315)
71 PLN03075 nicotianamine synthas 99.3 1.3E-11 2.8E-16 119.0 9.8 96 122-219 123-233 (296)
72 PRK13944 protein-L-isoaspartat 99.3 2.7E-11 6E-16 111.7 10.5 91 120-219 70-173 (205)
73 PRK07580 Mg-protoporphyrin IX 99.3 2.3E-11 5E-16 113.3 10.0 90 120-213 61-160 (230)
74 TIGR02716 C20_methyl_CrtF C-20 99.3 3.7E-11 8E-16 117.4 11.5 100 119-222 146-257 (306)
75 TIGR00091 tRNA (guanine-N(7)-) 99.2 9.9E-12 2.1E-16 113.6 6.6 99 122-220 16-133 (194)
76 PRK05134 bifunctional 3-demeth 99.2 9.2E-11 2E-15 109.8 13.3 99 120-221 46-153 (233)
77 TIGR00438 rrmJ cell division p 99.2 2.5E-11 5.4E-16 110.3 8.7 107 112-222 22-149 (188)
78 PRK04266 fibrillarin; Provisio 99.2 8E-11 1.7E-15 110.2 11.9 98 118-221 68-178 (226)
79 TIGR00537 hemK_rel_arch HemK-r 99.2 4.8E-11 1E-15 107.5 9.8 100 122-223 19-144 (179)
80 PF05724 TPMT: Thiopurine S-me 99.2 3.7E-11 8.1E-16 111.8 8.7 133 86-221 1-157 (218)
81 PRK13942 protein-L-isoaspartat 99.2 9E-11 2E-15 108.8 10.2 92 119-219 73-176 (212)
82 PRK08287 cobalt-precorrin-6Y C 99.2 1.4E-10 3E-15 105.2 10.7 96 119-222 28-134 (187)
83 TIGR00080 pimt protein-L-isoas 99.2 1.3E-10 2.7E-15 107.9 10.0 92 119-219 74-177 (215)
84 PF03291 Pox_MCEL: mRNA cappin 99.1 1.3E-10 2.9E-15 114.4 9.6 102 122-223 62-190 (331)
85 KOG1975 mRNA cap methyltransfe 99.1 1.5E-10 3.3E-15 110.6 9.5 117 107-223 102-241 (389)
86 PRK15001 SAM-dependent 23S rib 99.1 3E-10 6.6E-15 113.6 12.0 97 123-220 229-341 (378)
87 PF13659 Methyltransf_26: Meth 99.1 5.6E-11 1.2E-15 98.8 5.7 97 123-220 1-116 (117)
88 TIGR01177 conserved hypothetic 99.1 2.6E-10 5.7E-15 112.6 10.7 105 118-222 178-297 (329)
89 PRK00377 cbiT cobalt-precorrin 99.1 3.5E-10 7.7E-15 103.6 10.6 98 119-222 37-148 (198)
90 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.3E-10 2.8E-15 116.0 8.3 98 122-219 122-235 (390)
91 PRK09489 rsmC 16S ribosomal RN 99.1 6E-10 1.3E-14 110.5 12.4 97 123-221 197-305 (342)
92 TIGR00406 prmA ribosomal prote 99.1 3.4E-10 7.4E-15 109.8 10.3 97 120-224 157-264 (288)
93 PHA03411 putative methyltransf 99.1 5.7E-10 1.2E-14 106.3 11.5 132 87-219 29-183 (279)
94 PF05175 MTS: Methyltransferas 99.1 3.8E-10 8.2E-15 101.0 9.1 99 122-221 31-142 (170)
95 KOG1271 Methyltransferases [Ge 99.1 2.7E-10 5.8E-15 100.8 7.1 139 86-224 16-186 (227)
96 PRK07402 precorrin-6B methylas 99.1 9.6E-10 2.1E-14 100.5 10.6 98 119-223 37-146 (196)
97 PRK14968 putative methyltransf 99.0 1.3E-09 2.9E-14 98.0 10.7 101 121-222 22-151 (188)
98 TIGR03534 RF_mod_PrmC protein- 99.0 1.5E-09 3.2E-14 102.4 10.7 97 122-219 87-217 (251)
99 cd02440 AdoMet_MTases S-adenos 99.0 1.1E-09 2.3E-14 86.7 7.8 92 125-218 1-103 (107)
100 PRK00312 pcm protein-L-isoaspa 99.0 1.6E-09 3.5E-14 100.2 10.1 93 119-220 75-176 (212)
101 PRK14967 putative methyltransf 99.0 9.8E-10 2.1E-14 102.5 8.7 101 120-221 34-161 (223)
102 PRK00517 prmA ribosomal protei 99.0 6.6E-10 1.4E-14 105.6 7.3 94 120-223 117-217 (250)
103 PTZ00146 fibrillarin; Provisio 99.0 2.4E-09 5.1E-14 103.1 10.6 96 119-219 129-237 (293)
104 PF01135 PCMT: Protein-L-isoas 99.0 9.1E-10 2E-14 101.8 6.6 92 120-220 70-173 (209)
105 TIGR03533 L3_gln_methyl protei 98.9 3.9E-09 8.5E-14 102.2 9.9 98 122-220 121-252 (284)
106 PRK14904 16S rRNA methyltransf 98.9 5.4E-09 1.2E-13 107.4 11.0 111 116-227 244-385 (445)
107 TIGR00536 hemK_fam HemK family 98.9 5.5E-09 1.2E-13 101.2 10.2 97 124-221 116-246 (284)
108 PRK04457 spermidine synthase; 98.9 4.1E-09 8.8E-14 100.9 9.1 104 120-223 64-181 (262)
109 PRK10901 16S rRNA methyltransf 98.9 8.8E-09 1.9E-13 105.3 12.1 108 119-226 241-379 (427)
110 PRK14903 16S rRNA methyltransf 98.9 5.2E-09 1.1E-13 107.0 10.3 114 114-227 229-374 (431)
111 PRK14901 16S rRNA methyltransf 98.9 7.4E-09 1.6E-13 106.1 11.5 109 118-226 248-391 (434)
112 PRK14966 unknown domain/N5-glu 98.9 8.7E-09 1.9E-13 103.7 11.4 104 116-219 245-381 (423)
113 PF06080 DUF938: Protein of un 98.9 6.9E-09 1.5E-13 94.7 9.7 138 120-264 22-180 (204)
114 PF00891 Methyltransf_2: O-met 98.9 5.4E-09 1.2E-13 98.5 9.4 101 119-224 97-204 (241)
115 TIGR00563 rsmB ribosomal RNA s 98.9 9.9E-09 2.1E-13 104.9 11.3 109 119-227 235-376 (426)
116 PRK13943 protein-L-isoaspartat 98.9 9E-09 1.9E-13 101.1 10.5 91 120-219 78-180 (322)
117 PF05148 Methyltransf_8: Hypot 98.9 7.1E-09 1.5E-13 94.4 8.9 99 110-220 60-159 (219)
118 TIGR00446 nop2p NOL1/NOP2/sun 98.9 8.4E-09 1.8E-13 98.8 9.9 115 113-227 62-207 (264)
119 COG2242 CobL Precorrin-6B meth 98.9 1.4E-08 3.1E-13 91.0 10.6 100 119-225 31-141 (187)
120 TIGR03704 PrmC_rel_meth putati 98.9 1.8E-08 3.9E-13 95.9 11.7 98 123-220 87-217 (251)
121 PRK11805 N5-glutamine S-adenos 98.9 8.5E-09 1.8E-13 100.9 9.4 96 124-220 135-264 (307)
122 COG2264 PrmA Ribosomal protein 98.9 8.6E-09 1.9E-13 99.4 9.1 100 119-225 159-269 (300)
123 PHA03412 putative methyltransf 98.8 2.5E-08 5.4E-13 93.1 11.2 129 85-214 9-158 (241)
124 PRK09328 N5-glutamine S-adenos 98.8 1.9E-08 4.1E-13 96.4 10.7 99 120-219 106-238 (275)
125 COG2518 Pcm Protein-L-isoaspar 98.8 8.5E-09 1.8E-13 94.3 7.1 93 119-220 69-170 (209)
126 COG2813 RsmC 16S RNA G1207 met 98.8 3.2E-08 7E-13 95.0 11.4 120 99-220 135-267 (300)
127 PRK10611 chemotaxis methyltran 98.8 3.2E-08 6.9E-13 95.6 11.4 108 110-218 103-261 (287)
128 COG4123 Predicted O-methyltran 98.8 2.5E-08 5.3E-13 93.8 9.9 102 119-220 41-171 (248)
129 PF01739 CheR: CheR methyltran 98.8 1.4E-08 3E-13 92.9 7.4 95 123-218 32-174 (196)
130 PF06325 PrmA: Ribosomal prote 98.8 1.6E-08 3.4E-13 98.1 8.0 99 119-225 158-265 (295)
131 KOG3045 Predicted RNA methylas 98.8 5.3E-08 1.1E-12 90.8 10.8 98 111-221 169-266 (325)
132 PF05219 DREV: DREV methyltran 98.8 2.5E-08 5.4E-13 93.7 8.7 93 123-220 95-189 (265)
133 PRK14902 16S rRNA methyltransf 98.7 4.9E-08 1.1E-12 100.4 10.9 105 119-224 247-384 (444)
134 smart00650 rADc Ribosomal RNA 98.7 2.4E-08 5.2E-13 89.1 6.8 93 120-218 11-112 (169)
135 PRK01544 bifunctional N5-gluta 98.7 5.8E-08 1.2E-12 101.3 9.5 97 122-219 138-269 (506)
136 PRK00811 spermidine synthase; 98.7 5.7E-08 1.2E-12 94.0 8.7 99 121-219 75-191 (283)
137 PF02390 Methyltransf_4: Putat 98.7 5.6E-08 1.2E-12 89.0 8.1 95 125-219 20-133 (195)
138 TIGR03439 methyl_EasF probable 98.7 6.3E-07 1.4E-11 87.9 15.3 105 115-220 69-198 (319)
139 PLN02781 Probable caffeoyl-CoA 98.6 7E-08 1.5E-12 90.9 7.6 102 112-219 58-178 (234)
140 PF03141 Methyltransf_29: Puta 98.6 1.2E-08 2.7E-13 103.3 2.1 98 124-223 119-223 (506)
141 COG2519 GCD14 tRNA(1-methylade 98.6 2.4E-07 5.1E-12 86.8 9.7 102 118-228 90-204 (256)
142 KOG2940 Predicted methyltransf 98.6 4.7E-08 1E-12 89.6 3.8 98 123-223 73-178 (325)
143 PRK01581 speE spermidine synth 98.6 2.1E-07 4.6E-12 92.1 8.6 99 121-219 149-268 (374)
144 PRK15128 23S rRNA m(5)C1962 me 98.5 2.3E-07 5E-12 93.8 8.7 104 117-221 215-341 (396)
145 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.1E-07 4.6E-12 100.7 8.4 102 115-219 531-656 (702)
146 COG1041 Predicted DNA modifica 98.5 4.1E-07 8.9E-12 89.0 9.1 109 112-220 187-311 (347)
147 PRK03612 spermidine synthase; 98.5 2.7E-07 5.8E-12 96.7 7.9 99 121-219 296-415 (521)
148 PF05891 Methyltransf_PK: AdoM 98.5 3.1E-07 6.8E-12 84.4 7.3 96 123-219 56-161 (218)
149 PF08704 GCD14: tRNA methyltra 98.5 4.7E-07 1E-11 85.6 8.8 106 114-227 32-154 (247)
150 TIGR00417 speE spermidine synt 98.5 4.5E-07 9.8E-12 87.2 8.2 97 123-219 73-186 (270)
151 PLN02366 spermidine synthase 98.4 5.9E-07 1.3E-11 87.9 8.4 99 121-219 90-206 (308)
152 KOG1269 SAM-dependent methyltr 98.4 2E-07 4.4E-12 92.8 5.1 108 113-223 101-219 (364)
153 KOG1661 Protein-L-isoaspartate 98.4 3.2E-07 7E-12 83.3 5.8 94 118-220 78-194 (237)
154 COG0500 SmtA SAM-dependent met 98.4 1.7E-06 3.8E-11 71.8 9.5 95 126-224 52-160 (257)
155 COG1352 CheR Methylase of chem 98.4 7E-07 1.5E-11 85.4 7.9 95 123-218 97-240 (268)
156 KOG2899 Predicted methyltransf 98.4 8.2E-07 1.8E-11 82.3 7.5 99 118-218 54-208 (288)
157 KOG1499 Protein arginine N-met 98.4 4.9E-07 1.1E-11 88.1 6.0 97 119-216 57-164 (346)
158 COG0220 Predicted S-adenosylme 98.4 1.1E-06 2.4E-11 82.1 7.9 96 124-219 50-164 (227)
159 PRK03522 rumB 23S rRNA methylu 98.3 1.3E-06 2.8E-11 85.8 8.0 92 122-219 173-274 (315)
160 PRK13168 rumA 23S rRNA m(5)U19 98.3 2.4E-06 5.2E-11 87.9 9.9 93 120-219 295-400 (443)
161 COG2890 HemK Methylase of poly 98.3 2.6E-06 5.7E-11 82.3 9.1 93 125-219 113-238 (280)
162 PF11968 DUF3321: Putative met 98.3 1.8E-06 4E-11 79.2 7.5 90 124-221 53-151 (219)
163 PLN02476 O-methyltransferase 98.3 2.3E-06 4.9E-11 82.3 8.4 102 112-219 108-228 (278)
164 PRK10909 rsmD 16S rRNA m(2)G96 98.3 3.8E-06 8.2E-11 77.2 9.3 97 121-221 52-161 (199)
165 COG4122 Predicted O-methyltran 98.3 2.5E-06 5.5E-11 79.1 8.0 106 112-223 49-170 (219)
166 PRK04148 hypothetical protein; 98.3 6.9E-06 1.5E-10 70.4 9.7 95 122-224 16-114 (134)
167 COG3963 Phospholipid N-methylt 98.2 4.2E-06 9E-11 73.6 8.2 102 120-222 46-159 (194)
168 PLN02672 methionine S-methyltr 98.2 3.1E-06 6.8E-11 94.3 8.7 98 123-220 119-279 (1082)
169 COG2521 Predicted archaeal met 98.2 1.4E-06 3E-11 80.4 4.8 114 107-224 117-250 (287)
170 COG2263 Predicted RNA methylas 98.2 4.1E-06 9E-11 75.2 7.5 81 121-209 44-137 (198)
171 PF01596 Methyltransf_3: O-met 98.2 3.9E-06 8.4E-11 77.5 7.4 100 115-220 38-156 (205)
172 TIGR00478 tly hemolysin TlyA f 98.1 8.5E-06 1.8E-10 76.3 8.5 87 121-219 74-171 (228)
173 PRK14896 ksgA 16S ribosomal RN 98.1 4E-06 8.8E-11 80.0 6.5 68 120-189 27-101 (258)
174 PRK00274 ksgA 16S ribosomal RN 98.1 2.8E-06 6E-11 81.8 5.3 69 120-188 40-114 (272)
175 PF12147 Methyltransf_20: Puta 98.1 3E-05 6.6E-10 74.1 11.5 98 122-219 135-249 (311)
176 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 2.6E-05 5.7E-10 74.1 10.7 101 121-221 55-201 (256)
177 PRK01544 bifunctional N5-gluta 98.1 4.3E-06 9.3E-11 87.3 5.9 98 122-219 347-462 (506)
178 TIGR00479 rumA 23S rRNA (uraci 98.1 7.4E-06 1.6E-10 83.9 7.6 93 120-218 290-395 (431)
179 PF05185 PRMT5: PRMT5 arginine 98.1 6.3E-06 1.4E-10 84.6 6.9 92 123-216 187-294 (448)
180 PF01170 UPF0020: Putative RNA 98.1 1.2E-05 2.6E-10 72.6 7.7 101 117-218 23-149 (179)
181 PF10294 Methyltransf_16: Puta 98.0 9.8E-06 2.1E-10 72.7 6.8 98 120-221 43-158 (173)
182 TIGR02085 meth_trns_rumB 23S r 98.0 1.1E-05 2.5E-10 81.1 7.6 92 122-219 233-334 (374)
183 PLN02823 spermine synthase 98.0 1.9E-05 4.1E-10 78.2 8.8 94 122-219 103-220 (336)
184 KOG3420 Predicted RNA methylas 98.0 5.6E-06 1.2E-10 71.1 4.4 68 122-189 48-124 (185)
185 PLN02589 caffeoyl-CoA O-methyl 98.0 1.7E-05 3.6E-10 75.3 7.2 101 113-219 70-190 (247)
186 PF02527 GidB: rRNA small subu 98.0 4.2E-05 9.1E-10 69.4 9.3 92 120-219 45-148 (184)
187 KOG2904 Predicted methyltransf 97.9 4.8E-05 1E-09 71.9 9.5 101 122-222 148-288 (328)
188 COG0293 FtsJ 23S rRNA methylas 97.9 4.4E-05 9.6E-10 69.9 9.0 133 88-225 9-165 (205)
189 KOG2352 Predicted spermine/spe 97.9 2.2E-05 4.7E-10 79.8 7.7 116 106-221 30-163 (482)
190 TIGR00755 ksgA dimethyladenosi 97.9 2.3E-05 5.1E-10 74.5 7.4 91 120-220 27-127 (253)
191 PF07942 N2227: N2227-like pro 97.9 3E-05 6.5E-10 74.2 8.1 124 90-216 17-199 (270)
192 PTZ00338 dimethyladenosine tra 97.9 2E-05 4.4E-10 76.7 6.3 68 119-188 33-110 (294)
193 PRK11933 yebU rRNA (cytosine-C 97.9 6.8E-05 1.5E-09 77.4 10.1 110 119-228 110-251 (470)
194 COG1092 Predicted SAM-dependen 97.8 4.4E-05 9.6E-10 76.8 7.1 110 113-222 208-339 (393)
195 KOG3178 Hydroxyindole-O-methyl 97.8 6.4E-05 1.4E-09 73.6 7.4 91 124-220 179-276 (342)
196 PF01728 FtsJ: FtsJ-like methy 97.8 1.5E-05 3.2E-10 71.7 2.9 99 122-224 23-144 (181)
197 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.0001 2.2E-09 72.1 8.4 103 119-221 43-185 (311)
198 PF01269 Fibrillarin: Fibrilla 97.7 0.00022 4.8E-09 65.9 9.5 97 119-220 70-179 (229)
199 PF02475 Met_10: Met-10+ like- 97.7 6.1E-05 1.3E-09 69.2 5.8 93 116-216 95-199 (200)
200 KOG4589 Cell division protein 97.7 7E-05 1.5E-09 67.1 5.7 105 118-226 65-191 (232)
201 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00012 2.6E-09 73.8 8.0 89 123-218 58-157 (382)
202 PF09243 Rsm22: Mitochondrial 97.7 0.00015 3.3E-09 69.9 8.1 96 124-224 35-144 (274)
203 PRK11727 23S rRNA mA1618 methy 97.6 0.00011 2.3E-09 72.3 6.7 70 122-191 114-201 (321)
204 KOG1500 Protein arginine N-met 97.6 0.00012 2.6E-09 71.0 6.7 95 122-219 177-282 (517)
205 TIGR00095 RNA methyltransferas 97.6 0.00031 6.7E-09 64.0 8.9 96 122-221 49-161 (189)
206 KOG3191 Predicted N6-DNA-methy 97.5 0.00039 8.4E-09 62.2 8.3 100 123-223 44-172 (209)
207 COG0421 SpeE Spermidine syntha 97.5 0.00029 6.3E-09 68.1 8.0 96 118-218 73-189 (282)
208 PF08123 DOT1: Histone methyla 97.5 7.9E-05 1.7E-09 68.8 3.8 94 119-216 39-155 (205)
209 COG0144 Sun tRNA and rRNA cyto 97.5 0.0013 2.7E-08 65.9 12.6 116 113-228 147-297 (355)
210 COG4627 Uncharacterized protei 97.4 0.0001 2.2E-09 64.2 3.2 86 125-223 5-90 (185)
211 KOG3987 Uncharacterized conser 97.4 7E-05 1.5E-09 68.1 2.1 92 123-219 113-207 (288)
212 PF01564 Spermine_synth: Sperm 97.3 0.00063 1.4E-08 64.6 7.8 94 122-219 76-191 (246)
213 KOG0820 Ribosomal RNA adenine 97.3 0.00034 7.3E-09 66.3 5.7 67 119-187 55-131 (315)
214 PF10672 Methyltrans_SAM: S-ad 97.3 0.00021 4.6E-09 69.1 4.6 102 121-222 122-241 (286)
215 TIGR02143 trmA_only tRNA (urac 97.3 0.0002 4.4E-09 71.5 4.5 88 124-219 199-311 (353)
216 COG0030 KsgA Dimethyladenosine 97.3 0.00057 1.2E-08 65.0 6.3 68 120-187 28-103 (259)
217 COG2520 Predicted methyltransf 97.2 0.0015 3.3E-08 64.5 8.9 104 115-225 181-295 (341)
218 PRK00536 speE spermidine synth 97.2 0.0014 3.1E-08 62.6 8.4 87 121-219 71-171 (262)
219 PRK05031 tRNA (uracil-5-)-meth 97.2 0.00041 8.8E-09 69.6 4.6 88 124-219 208-320 (362)
220 COG0357 GidB Predicted S-adeno 97.2 0.0028 6.2E-08 58.7 9.8 91 123-220 68-169 (215)
221 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0021 4.6E-08 70.0 10.4 78 144-221 258-349 (702)
222 PF04672 Methyltransf_19: S-ad 97.2 0.0013 2.7E-08 62.8 7.6 100 124-223 70-194 (267)
223 PRK00050 16S rRNA m(4)C1402 me 97.1 0.00057 1.2E-08 66.5 5.2 75 112-187 10-98 (296)
224 PRK11760 putative 23S rRNA C24 97.0 0.0013 2.8E-08 64.8 6.3 92 120-219 209-305 (357)
225 KOG1596 Fibrillarin and relate 97.0 0.0044 9.5E-08 57.9 9.0 98 119-221 153-263 (317)
226 KOG1663 O-methyltransferase [S 97.0 0.0051 1.1E-07 57.1 9.4 94 120-219 71-183 (237)
227 TIGR02987 met_A_Alw26 type II 96.9 0.0022 4.8E-08 67.4 7.9 65 123-187 32-120 (524)
228 PF03602 Cons_hypoth95: Conser 96.9 0.00052 1.1E-08 62.2 2.1 99 121-222 41-156 (183)
229 COG1889 NOP1 Fibrillarin-like 96.9 0.0054 1.2E-07 55.9 8.4 97 120-221 74-182 (231)
230 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0031 6.7E-08 63.4 6.7 90 123-219 45-147 (374)
231 COG4076 Predicted RNA methylas 96.7 0.0017 3.7E-08 58.4 4.3 91 124-217 34-133 (252)
232 PF03059 NAS: Nicotianamine sy 96.7 0.0078 1.7E-07 57.9 9.1 93 124-218 122-229 (276)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.6 0.0044 9.6E-08 60.0 6.5 113 116-228 79-228 (283)
234 PF13679 Methyltransf_32: Meth 96.6 0.005 1.1E-07 53.2 6.1 93 121-222 24-134 (141)
235 KOG2915 tRNA(1-methyladenosine 96.6 0.016 3.6E-07 55.1 9.9 103 116-226 99-217 (314)
236 TIGR00006 S-adenosyl-methyltra 96.4 0.016 3.4E-07 56.6 9.2 72 113-185 12-98 (305)
237 KOG1709 Guanidinoacetate methy 96.4 0.011 2.3E-07 54.5 7.3 96 121-219 100-206 (271)
238 PF07091 FmrO: Ribosomal RNA m 96.4 0.02 4.3E-07 54.1 9.3 101 118-222 101-211 (251)
239 PF03141 Methyltransf_29: Puta 96.4 0.0053 1.1E-07 63.0 5.6 96 124-219 367-467 (506)
240 PF06962 rRNA_methylase: Putat 96.3 0.017 3.6E-07 49.9 7.3 80 144-225 1-98 (140)
241 COG0116 Predicted N6-adenine-s 96.2 0.027 5.9E-07 56.3 9.5 103 117-219 186-344 (381)
242 COG4798 Predicted methyltransf 96.2 0.02 4.4E-07 51.9 7.5 104 118-222 44-169 (238)
243 COG4262 Predicted spermidine s 96.1 0.017 3.8E-07 57.0 7.4 97 119-219 286-407 (508)
244 PF00398 RrnaAD: Ribosomal RNA 96.1 0.026 5.7E-07 53.9 8.5 86 120-211 28-123 (262)
245 KOG2798 Putative trehalase [Ca 95.9 0.011 2.5E-07 57.1 5.2 127 90-219 111-296 (369)
246 COG0742 N6-adenine-specific me 95.9 0.039 8.5E-07 50.0 8.3 96 122-220 43-155 (187)
247 PF04816 DUF633: Family of unk 95.8 0.026 5.5E-07 52.2 6.7 89 126-219 1-101 (205)
248 PF09445 Methyltransf_15: RNA 95.7 0.0054 1.2E-07 54.5 1.9 61 125-185 2-75 (163)
249 PF13578 Methyltransf_24: Meth 95.6 0.0039 8.6E-08 50.7 0.6 89 127-219 1-105 (106)
250 COG1064 AdhP Zn-dependent alco 95.6 0.037 8.1E-07 54.7 7.5 93 118-221 162-261 (339)
251 PF01795 Methyltransf_5: MraW 95.5 0.053 1.2E-06 53.0 7.9 74 111-185 10-99 (310)
252 COG5459 Predicted rRNA methyla 95.4 0.03 6.5E-07 55.1 5.9 102 119-222 111-228 (484)
253 COG1189 Predicted rRNA methyla 95.3 0.087 1.9E-06 49.4 8.4 93 120-219 77-178 (245)
254 KOG3115 Methyltransferase-like 95.3 0.061 1.3E-06 49.2 7.1 99 121-219 59-183 (249)
255 KOG3201 Uncharacterized conser 95.2 0.0087 1.9E-07 52.7 1.4 100 122-224 29-145 (201)
256 PF05958 tRNA_U5-meth_tr: tRNA 95.1 0.051 1.1E-06 54.3 6.8 49 125-173 199-256 (352)
257 TIGR01444 fkbM_fam methyltrans 94.9 0.034 7.3E-07 47.5 4.3 37 125-161 1-41 (143)
258 KOG0024 Sorbitol dehydrogenase 94.9 0.16 3.5E-06 49.6 9.3 100 117-225 164-279 (354)
259 COG2265 TrmA SAM-dependent met 94.9 0.059 1.3E-06 55.3 6.7 93 121-219 292-396 (432)
260 KOG2187 tRNA uracil-5-methyltr 94.9 0.041 8.9E-07 56.7 5.3 55 118-172 379-442 (534)
261 PLN02668 indole-3-acetate carb 94.7 0.071 1.5E-06 53.8 6.4 56 169-224 152-242 (386)
262 KOG1122 tRNA and rRNA cytosine 94.3 0.24 5.2E-06 50.0 9.0 107 119-226 238-378 (460)
263 COG2384 Predicted SAM-dependen 94.2 0.17 3.7E-06 46.9 7.3 101 113-218 7-119 (226)
264 COG3897 Predicted methyltransf 94.2 0.068 1.5E-06 48.6 4.5 92 121-218 78-178 (218)
265 PF05971 Methyltransf_10: Prot 93.7 0.12 2.6E-06 50.3 5.6 81 113-193 89-191 (299)
266 PRK09424 pntA NAD(P) transhydr 93.3 0.33 7.2E-06 50.9 8.5 97 121-220 163-286 (509)
267 PF03492 Methyltransf_7: SAM d 93.3 0.22 4.8E-06 49.5 6.9 102 123-224 17-188 (334)
268 KOG0822 Protein kinase inhibit 93.3 0.12 2.5E-06 53.5 5.0 94 124-218 369-477 (649)
269 KOG2730 Methylase [General fun 93.3 0.1 2.3E-06 48.3 4.1 65 123-187 95-173 (263)
270 PF04989 CmcI: Cephalosporin h 93.2 0.099 2.1E-06 48.2 4.0 104 113-221 24-149 (206)
271 cd08283 FDH_like_1 Glutathione 93.1 0.35 7.6E-06 48.6 8.1 99 118-219 180-306 (386)
272 COG0275 Predicted S-adenosylme 93.0 0.49 1.1E-05 46.0 8.4 59 113-172 15-84 (314)
273 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.48 1E-05 45.9 8.5 95 118-221 161-265 (338)
274 PF06859 Bin3: Bicoid-interact 92.7 0.071 1.5E-06 44.0 2.0 41 179-219 1-44 (110)
275 PF03269 DUF268: Caenorhabditi 92.5 0.099 2.1E-06 46.1 2.7 48 177-224 61-116 (177)
276 COG0286 HsdM Type I restrictio 91.8 0.61 1.3E-05 48.8 8.1 132 90-221 145-328 (489)
277 KOG4058 Uncharacterized conser 91.6 1.2 2.6E-05 39.0 8.2 103 111-222 62-175 (199)
278 KOG1562 Spermidine synthase [A 91.4 0.85 1.8E-05 44.2 7.8 100 120-219 119-236 (337)
279 KOG1099 SAM-dependent methyltr 89.7 0.22 4.8E-06 46.4 2.3 95 124-222 43-166 (294)
280 KOG2198 tRNA cytosine-5-methyl 89.6 1.3 2.9E-05 44.1 7.7 111 116-226 149-303 (375)
281 COG4301 Uncharacterized conser 89.1 2.2 4.8E-05 40.5 8.4 99 120-220 76-194 (321)
282 TIGR00561 pntA NAD(P) transhyd 89.0 0.67 1.5E-05 48.6 5.5 92 122-216 163-281 (511)
283 PF07757 AdoMet_MTase: Predict 88.9 0.19 4.2E-06 41.3 1.1 28 123-150 59-88 (112)
284 KOG2793 Putative N2,N2-dimethy 88.9 0.89 1.9E-05 43.2 5.7 100 122-224 86-204 (248)
285 PF03686 UPF0146: Uncharacteri 87.6 0.75 1.6E-05 39.0 3.9 104 110-225 1-108 (127)
286 KOG2920 Predicted methyltransf 87.6 0.31 6.8E-06 46.8 1.8 96 121-219 115-234 (282)
287 TIGR02822 adh_fam_2 zinc-bindi 87.2 2.7 5.8E-05 41.2 8.3 91 118-220 161-255 (329)
288 KOG2671 Putative RNA methylase 87.0 0.56 1.2E-05 46.3 3.2 75 111-185 197-290 (421)
289 PRK09880 L-idonate 5-dehydroge 86.7 2.1 4.5E-05 42.1 7.2 91 121-220 168-267 (343)
290 PRK11524 putative methyltransf 85.8 0.64 1.4E-05 45.0 3.0 57 163-219 9-80 (284)
291 cd05188 MDR Medium chain reduc 85.8 3.5 7.5E-05 38.1 7.9 92 119-220 131-233 (271)
292 PHA01634 hypothetical protein 84.0 4.3 9.3E-05 34.7 6.6 77 108-185 13-98 (156)
293 PRK13699 putative methylase; P 83.5 0.84 1.8E-05 42.7 2.6 55 164-218 3-71 (227)
294 COG3510 CmcI Cephalosporin hyd 83.5 3.6 7.8E-05 37.6 6.4 108 113-224 61-185 (237)
295 cd08245 CAD Cinnamyl alcohol d 83.3 5.8 0.00013 38.3 8.5 94 118-220 158-257 (330)
296 PF00107 ADH_zinc_N: Zinc-bind 83.2 3.3 7.1E-05 34.3 5.9 72 141-222 13-92 (130)
297 cd08232 idonate-5-DH L-idonate 83.1 4.4 9.5E-05 39.4 7.6 90 122-220 165-263 (339)
298 PF11899 DUF3419: Protein of u 83.0 1.5 3.2E-05 44.4 4.2 61 162-223 276-338 (380)
299 KOG2539 Mitochondrial/chloropl 82.9 1.6 3.4E-05 44.9 4.3 96 124-219 202-315 (491)
300 cd08234 threonine_DH_like L-th 82.8 5.4 0.00012 38.6 8.1 95 118-221 155-259 (334)
301 PRK10742 putative methyltransf 82.3 2.9 6.3E-05 39.7 5.6 73 119-191 83-176 (250)
302 COG1063 Tdh Threonine dehydrog 82.0 8.3 0.00018 38.4 9.2 94 121-223 167-273 (350)
303 COG3129 Predicted SAM-dependen 82.0 2.7 5.8E-05 39.5 5.1 70 122-191 78-165 (292)
304 cd00401 AdoHcyase S-adenosyl-L 81.4 4.7 0.0001 41.3 7.2 98 108-219 187-289 (413)
305 COG1867 TRM1 N2,N2-dimethylgua 81.4 3.1 6.7E-05 41.6 5.7 90 123-219 53-154 (380)
306 PF02005 TRM: N2,N2-dimethylgu 80.9 2 4.3E-05 43.5 4.3 91 122-219 49-154 (377)
307 cd08230 glucose_DH Glucose deh 80.5 6.8 0.00015 38.6 8.0 91 120-221 170-271 (355)
308 cd08255 2-desacetyl-2-hydroxye 80.3 5.6 0.00012 37.4 7.0 92 118-219 93-190 (277)
309 PF02254 TrkA_N: TrkA-N domain 79.6 8.3 0.00018 31.2 7.0 76 141-222 20-99 (116)
310 COG1255 Uncharacterized protei 79.3 2.3 5E-05 35.5 3.4 88 121-221 13-104 (129)
311 PF03514 GRAS: GRAS domain fam 78.9 18 0.00039 36.5 10.5 95 122-217 110-242 (374)
312 PF04445 SAM_MT: Putative SAM- 78.7 1.7 3.7E-05 40.9 2.9 73 119-191 70-163 (234)
313 PTZ00357 methyltransferase; Pr 78.1 5 0.00011 43.4 6.2 89 125-214 703-830 (1072)
314 PF01555 N6_N4_Mtase: DNA meth 76.6 1.9 4.2E-05 39.1 2.5 41 120-160 189-231 (231)
315 PF01861 DUF43: Protein of unk 76.0 20 0.00043 34.0 9.0 97 122-222 44-151 (243)
316 PF02636 Methyltransf_28: Puta 74.6 3.2 7E-05 39.2 3.6 67 124-194 20-110 (252)
317 KOG2651 rRNA adenine N-6-methy 74.5 4.6 0.0001 40.6 4.6 40 121-160 152-194 (476)
318 cd00315 Cyt_C5_DNA_methylase C 74.3 5.3 0.00011 38.4 5.0 63 125-187 2-70 (275)
319 TIGR03201 dearomat_had 6-hydro 74.2 14 0.0003 36.4 8.1 93 118-220 162-273 (349)
320 TIGR02825 B4_12hDH leukotriene 73.4 18 0.0004 34.9 8.7 92 118-219 134-237 (325)
321 KOG2352 Predicted spermine/spe 73.2 10 0.00023 39.2 7.0 105 121-225 294-422 (482)
322 PRK11524 putative methyltransf 72.7 3.9 8.4E-05 39.5 3.6 49 113-161 198-249 (284)
323 PF11599 AviRa: RRNA methyltra 72.7 2 4.4E-05 39.9 1.5 38 124-161 53-96 (246)
324 PF11312 DUF3115: Protein of u 72.1 5.6 0.00012 39.0 4.6 96 124-219 88-242 (315)
325 PLN03154 putative allyl alcoho 71.9 21 0.00046 35.2 8.9 92 118-219 154-258 (348)
326 cd08261 Zn_ADH7 Alcohol dehydr 71.2 19 0.00041 34.9 8.2 96 117-221 154-260 (337)
327 KOG1501 Arginine N-methyltrans 70.6 4.4 9.5E-05 41.5 3.5 38 124-161 68-108 (636)
328 PRK13699 putative methylase; P 70.5 6.9 0.00015 36.6 4.7 50 112-161 152-204 (227)
329 TIGR00497 hsdM type I restrict 69.2 22 0.00048 37.2 8.7 133 88-220 172-356 (501)
330 TIGR03451 mycoS_dep_FDH mycoth 68.9 21 0.00045 35.2 8.0 93 118-220 172-277 (358)
331 cd08281 liver_ADH_like1 Zinc-d 68.6 17 0.00038 36.0 7.5 92 119-219 188-290 (371)
332 cd05285 sorbitol_DH Sorbitol d 68.6 23 0.00049 34.6 8.2 95 117-220 157-266 (343)
333 cd08236 sugar_DH NAD(P)-depend 68.5 20 0.00044 34.7 7.8 94 118-220 155-259 (343)
334 cd08237 ribitol-5-phosphate_DH 67.3 21 0.00045 35.1 7.6 91 120-220 161-257 (341)
335 cd05278 FDH_like Formaldehyde 67.2 16 0.00035 35.4 6.8 93 118-219 163-267 (347)
336 TIGR03366 HpnZ_proposed putati 67.1 14 0.0003 35.1 6.2 90 121-220 119-219 (280)
337 cd08295 double_bond_reductase_ 64.2 32 0.00069 33.5 8.2 92 118-219 147-251 (338)
338 KOG1253 tRNA methyltransferase 63.8 2.4 5.2E-05 43.9 0.2 97 116-219 103-216 (525)
339 PRK03659 glutathione-regulated 63.3 23 0.00051 38.0 7.6 93 124-222 401-501 (601)
340 cd08239 THR_DH_like L-threonin 62.9 28 0.0006 33.8 7.5 92 119-220 160-263 (339)
341 cd08298 CAD2 Cinnamyl alcohol 62.5 40 0.00087 32.4 8.5 90 118-219 163-256 (329)
342 TIGR00027 mthyl_TIGR00027 meth 62.0 49 0.0011 31.5 8.8 97 124-222 83-200 (260)
343 PRK10309 galactitol-1-phosphat 61.2 36 0.00078 33.2 8.0 93 118-220 156-261 (347)
344 cd08294 leukotriene_B4_DH_like 61.2 54 0.0012 31.4 9.1 91 118-219 139-241 (329)
345 PLN02740 Alcohol dehydrogenase 60.5 38 0.00082 33.8 8.1 93 118-220 194-301 (381)
346 TIGR00692 tdh L-threonine 3-de 60.2 54 0.0012 31.8 9.1 94 118-220 157-262 (340)
347 COG1565 Uncharacterized conser 59.7 11 0.00023 37.8 3.8 40 122-161 77-128 (370)
348 cd05281 TDH Threonine dehydrog 59.3 53 0.0011 31.9 8.8 92 119-219 160-262 (341)
349 PF02153 PDH: Prephenate dehyd 58.7 21 0.00045 33.9 5.6 67 140-216 9-76 (258)
350 PLN02827 Alcohol dehydrogenase 57.8 35 0.00076 34.1 7.4 92 118-219 189-295 (378)
351 PF12692 Methyltransf_17: S-ad 57.6 3 6.4E-05 36.5 -0.4 95 124-218 30-133 (160)
352 PRK01747 mnmC bifunctional tRN 56.6 20 0.00043 38.9 5.7 55 164-219 150-206 (662)
353 KOG1098 Putative SAM-dependent 56.0 7.5 0.00016 41.4 2.1 103 118-224 40-163 (780)
354 TIGR01202 bchC 2-desacetyl-2-h 55.9 29 0.00062 33.5 6.2 85 121-220 143-232 (308)
355 PF10017 Methyltransf_33: Hist 55.4 19 0.0004 30.5 4.2 41 348-389 85-125 (127)
356 cd08242 MDR_like Medium chain 54.6 54 0.0012 31.3 7.9 90 118-218 151-244 (319)
357 cd08285 NADP_ADH NADP(H)-depen 54.0 63 0.0014 31.5 8.4 92 118-219 162-266 (351)
358 cd08243 quinone_oxidoreductase 53.3 94 0.002 29.3 9.3 91 118-219 138-238 (320)
359 PF10354 DUF2431: Domain of un 51.3 51 0.0011 29.2 6.5 62 160-223 51-129 (166)
360 TIGR00936 ahcY adenosylhomocys 51.3 43 0.00094 34.2 6.7 87 120-220 192-283 (406)
361 PRK05476 S-adenosyl-L-homocyst 50.7 38 0.00082 34.9 6.2 86 120-219 209-299 (425)
362 cd08238 sorbose_phosphate_red 50.7 97 0.0021 31.3 9.3 92 119-219 172-288 (410)
363 TIGR02818 adh_III_F_hyde S-(hy 50.1 69 0.0015 31.7 8.0 93 118-220 181-288 (368)
364 cd08231 MDR_TM0436_like Hypoth 49.2 88 0.0019 30.6 8.6 92 119-219 174-280 (361)
365 cd08263 Zn_ADH10 Alcohol dehyd 48.6 70 0.0015 31.5 7.8 93 119-220 184-288 (367)
366 PRK03562 glutathione-regulated 48.0 57 0.0012 35.3 7.4 92 124-221 401-500 (621)
367 cd08300 alcohol_DH_class_III c 47.7 71 0.0015 31.6 7.6 93 118-220 182-289 (368)
368 cd08274 MDR9 Medium chain dehy 47.6 1.1E+02 0.0024 29.5 8.9 91 118-219 173-273 (350)
369 COG2933 Predicted SAM-dependen 47.6 69 0.0015 31.0 6.9 87 118-212 207-296 (358)
370 cd08279 Zn_ADH_class_III Class 46.9 59 0.0013 32.0 6.9 94 118-220 178-283 (363)
371 COG0686 Ald Alanine dehydrogen 46.8 27 0.00059 34.4 4.2 90 124-216 169-265 (371)
372 PLN02494 adenosylhomocysteinas 46.4 44 0.00096 34.8 6.0 102 106-220 237-342 (477)
373 PRK08306 dipicolinate synthase 45.9 50 0.0011 32.1 6.1 87 122-219 151-241 (296)
374 cd08277 liver_alcohol_DH_like 45.3 90 0.002 30.8 8.0 93 118-220 180-287 (365)
375 KOG3924 Putative protein methy 44.9 27 0.00059 35.4 4.0 96 120-219 190-308 (419)
376 cd08241 QOR1 Quinone oxidoredu 44.8 1.3E+02 0.0028 28.1 8.7 93 118-220 135-239 (323)
377 cd08293 PTGR2 Prostaglandin re 44.5 1.5E+02 0.0032 28.7 9.2 91 119-219 149-254 (345)
378 PLN02586 probable cinnamyl alc 44.4 66 0.0014 31.8 6.8 91 120-219 181-278 (360)
379 PRK06182 short chain dehydroge 44.4 1.1E+02 0.0024 28.5 8.1 69 123-191 3-86 (273)
380 cd08233 butanediol_DH_like (2R 44.0 1.5E+02 0.0033 28.8 9.3 93 118-220 168-273 (351)
381 cd08266 Zn_ADH_like1 Alcohol d 43.7 1.5E+02 0.0032 28.1 9.0 91 118-219 162-265 (342)
382 PLN02178 cinnamyl-alcohol dehy 42.7 70 0.0015 32.0 6.7 91 121-220 177-274 (375)
383 PRK05786 fabG 3-ketoacyl-(acyl 42.4 1.3E+02 0.0028 27.1 8.1 99 122-220 4-136 (238)
384 PRK10669 putative cation:proto 42.4 77 0.0017 33.6 7.3 90 124-219 418-515 (558)
385 PRK08324 short chain dehydroge 42.1 79 0.0017 34.5 7.5 98 122-219 421-557 (681)
386 PF01555 N6_N4_Mtase: DNA meth 41.7 20 0.00042 32.4 2.4 24 198-221 35-58 (231)
387 PRK09422 ethanol-active dehydr 41.3 1.7E+02 0.0038 28.0 9.2 95 117-220 157-262 (338)
388 PRK00050 16S rRNA m(4)C1402 me 41.3 28 0.00061 34.0 3.5 25 198-222 215-239 (296)
389 cd08270 MDR4 Medium chain dehy 41.2 1.6E+02 0.0034 27.7 8.7 87 122-220 132-223 (305)
390 PTZ00075 Adenosylhomocysteinas 40.8 41 0.00089 35.1 4.7 86 121-220 252-342 (476)
391 cd08301 alcohol_DH_plants Plan 40.1 1.1E+02 0.0024 30.2 7.6 94 118-220 183-290 (369)
392 COG1062 AdhC Zn-dependent alco 40.0 1.2E+02 0.0026 30.4 7.5 97 118-223 181-289 (366)
393 PF11899 DUF3419: Protein of u 39.9 56 0.0012 33.1 5.5 49 111-159 24-74 (380)
394 PRK10083 putative oxidoreducta 39.9 1.4E+02 0.0031 28.6 8.4 93 118-220 156-260 (339)
395 cd05284 arabinose_DH_like D-ar 39.8 1.6E+02 0.0034 28.4 8.6 92 118-220 163-267 (340)
396 PRK05396 tdh L-threonine 3-deh 38.9 1.2E+02 0.0026 29.3 7.7 90 121-220 162-264 (341)
397 cd08297 CAD3 Cinnamyl alcohol 36.5 2.5E+02 0.0055 26.9 9.5 93 119-220 162-266 (341)
398 PRK08265 short chain dehydroge 36.3 1.1E+02 0.0024 28.4 6.7 67 123-189 6-90 (261)
399 KOG2078 tRNA modification enzy 36.2 38 0.00082 34.8 3.5 44 118-161 245-290 (495)
400 TIGR02817 adh_fam_1 zinc-bindi 36.2 2.3E+02 0.0051 27.0 9.2 87 123-218 149-246 (336)
401 cd08296 CAD_like Cinnamyl alco 36.0 1.6E+02 0.0035 28.4 8.0 93 119-220 160-260 (333)
402 PRK07502 cyclohexadienyl dehyd 35.9 99 0.0021 29.9 6.4 84 124-216 7-97 (307)
403 cd08265 Zn_ADH3 Alcohol dehydr 35.8 2.2E+02 0.0048 28.2 9.1 93 118-219 199-307 (384)
404 TIGR02819 fdhA_non_GSH formald 35.7 1.5E+02 0.0033 29.8 8.0 103 118-220 181-300 (393)
405 COG0604 Qor NADPH:quinone redu 35.3 2.1E+02 0.0045 28.1 8.7 96 117-222 137-244 (326)
406 PF05050 Methyltransf_21: Meth 35.2 37 0.0008 28.8 3.0 34 128-161 1-42 (167)
407 PF02558 ApbA: Ketopantoate re 35.2 49 0.0011 28.0 3.7 89 126-221 1-103 (151)
408 cd05289 MDR_like_2 alcohol deh 35.0 2.9E+02 0.0063 25.5 9.5 90 119-219 141-238 (309)
409 cd08278 benzyl_alcohol_DH Benz 34.8 1.3E+02 0.0029 29.6 7.3 92 119-219 183-285 (365)
410 COG0287 TyrA Prephenate dehydr 34.3 1E+02 0.0023 29.7 6.2 88 124-219 4-97 (279)
411 cd08240 6_hydroxyhexanoate_dh_ 33.6 2E+02 0.0043 27.9 8.3 91 119-219 172-274 (350)
412 cd08246 crotonyl_coA_red croto 33.6 2.6E+02 0.0057 27.7 9.3 92 119-220 190-316 (393)
413 PTZ00354 alcohol dehydrogenase 32.8 3.4E+02 0.0074 25.6 9.7 91 118-219 136-240 (334)
414 cd08286 FDH_like_ADH2 formalde 32.8 2.3E+02 0.0049 27.3 8.5 93 118-219 162-266 (345)
415 cd05286 QOR2 Quinone oxidoredu 32.1 2.9E+02 0.0063 25.6 8.9 92 118-219 132-235 (320)
416 PRK07417 arogenate dehydrogena 31.9 1.3E+02 0.0028 28.7 6.5 83 125-218 2-89 (279)
417 cd08235 iditol_2_DH_like L-idi 31.9 1.9E+02 0.0041 27.8 7.7 92 119-219 162-265 (343)
418 cd08252 AL_MDR Arginate lyase 31.7 2.1E+02 0.0046 27.2 8.1 88 123-219 150-248 (336)
419 PRK05708 2-dehydropantoate 2-r 31.3 2.2E+02 0.0048 27.5 8.1 90 124-219 3-104 (305)
420 PF05430 Methyltransf_30: S-ad 30.5 14 0.00031 31.2 -0.4 21 199-219 70-90 (124)
421 PF00145 DNA_methylase: C-5 cy 30.5 51 0.0011 31.6 3.4 62 125-188 2-70 (335)
422 PF10237 N6-adenineMlase: Prob 30.4 1.5E+02 0.0032 26.3 6.0 95 120-220 23-124 (162)
423 KOG1269 SAM-dependent methyltr 30.1 71 0.0015 32.2 4.4 96 122-220 180-314 (364)
424 PRK09072 short chain dehydroge 29.8 1.8E+02 0.0038 26.9 6.9 69 123-191 5-92 (263)
425 cd08289 MDR_yhfp_like Yhfp put 29.7 2.6E+02 0.0056 26.5 8.2 89 121-220 145-244 (326)
426 PLN02702 L-idonate 5-dehydroge 29.0 3.2E+02 0.0069 26.7 8.9 93 118-219 177-285 (364)
427 cd08284 FDH_like_2 Glutathione 28.0 2.8E+02 0.0062 26.5 8.3 92 119-219 164-266 (344)
428 cd05279 Zn_ADH1 Liver alcohol 28.0 1.9E+02 0.0042 28.4 7.1 93 118-219 179-285 (365)
429 cd08273 MDR8 Medium chain dehy 27.9 4.9E+02 0.011 24.6 9.8 91 118-219 135-233 (331)
430 TIGR00518 alaDH alanine dehydr 27.3 44 0.00095 33.6 2.4 93 123-219 167-267 (370)
431 cd08267 MDR1 Medium chain dehy 27.2 3.2E+02 0.007 25.5 8.4 94 118-220 139-241 (319)
432 PF07279 DUF1442: Protein of u 27.2 1.9E+02 0.004 27.0 6.2 100 111-219 27-148 (218)
433 PF04072 LCM: Leucine carboxyl 26.9 1.2E+02 0.0026 26.9 5.0 91 113-205 69-182 (183)
434 PRK05225 ketol-acid reductoiso 26.9 82 0.0018 32.8 4.2 87 122-219 35-131 (487)
435 PRK05693 short chain dehydroge 26.6 2.6E+02 0.0056 26.0 7.5 66 125-190 3-83 (274)
436 PF05206 TRM13: Methyltransfer 26.6 72 0.0016 30.5 3.5 56 119-174 15-86 (259)
437 PF07101 DUF1363: Protein of u 26.5 25 0.00054 28.3 0.3 12 126-137 6-17 (124)
438 PF01206 TusA: Sulfurtransfera 25.9 1.6E+02 0.0034 21.5 4.6 43 349-392 28-70 (70)
439 COG3315 O-Methyltransferase in 25.8 3.8E+02 0.0081 26.1 8.5 95 123-219 93-209 (297)
440 PLN02514 cinnamyl-alcohol dehy 25.8 1.4E+02 0.0031 29.3 5.7 92 120-220 178-276 (357)
441 PRK08655 prephenate dehydrogen 25.7 1.6E+02 0.0035 30.3 6.2 84 125-219 2-91 (437)
442 PRK12921 2-dehydropantoate 2-r 25.5 2.4E+02 0.0052 26.8 7.1 87 125-218 2-101 (305)
443 KOG1252 Cystathionine beta-syn 25.3 72 0.0016 31.8 3.3 34 125-158 214-255 (362)
444 PRK12742 oxidoreductase; Provi 25.2 3.9E+02 0.0086 23.9 8.3 97 123-219 6-131 (237)
445 cd08268 MDR2 Medium chain dehy 24.9 4.3E+02 0.0094 24.6 8.8 92 118-219 140-243 (328)
446 PRK08267 short chain dehydroge 24.5 2.1E+02 0.0045 26.3 6.3 66 125-190 3-88 (260)
447 cd08260 Zn_ADH6 Alcohol dehydr 24.2 2.4E+02 0.0053 27.1 7.0 93 118-219 161-264 (345)
448 cd05288 PGDH Prostaglandin deh 24.2 5.2E+02 0.011 24.4 9.2 91 119-219 142-244 (329)
449 PRK05562 precorrin-2 dehydroge 24.2 1.6E+02 0.0035 27.5 5.3 63 122-186 24-92 (223)
450 KOG0022 Alcohol dehydrogenase, 23.5 1.2E+02 0.0026 30.1 4.4 93 118-220 188-295 (375)
451 cd05283 CAD1 Cinnamyl alcohol 23.1 2.5E+02 0.0055 27.0 6.9 91 120-220 167-264 (337)
452 PF08484 Methyltransf_14: C-me 23.1 2E+02 0.0044 25.2 5.5 88 121-219 66-159 (160)
453 cd01208 X11 X11 Phosphotyrosin 22.6 38 0.00082 29.8 0.8 23 350-372 118-140 (156)
454 PRK13403 ketol-acid reductoiso 22.4 1.8E+02 0.004 28.9 5.5 87 122-218 15-105 (335)
455 cd08250 Mgc45594_like Mgc45594 22.3 6.5E+02 0.014 23.8 9.5 92 118-219 135-237 (329)
456 PRK09496 trkA potassium transp 22.2 5.8E+02 0.013 25.8 9.6 91 125-221 2-101 (453)
457 KOG1227 Putative methyltransfe 22.1 70 0.0015 31.4 2.5 91 120-218 192-295 (351)
458 PF14740 DUF4471: Domain of un 22.0 1.1E+02 0.0023 29.9 3.8 35 177-219 220-254 (289)
459 cd08291 ETR_like_1 2-enoyl thi 21.9 4.8E+02 0.01 24.8 8.5 71 140-220 166-243 (324)
460 PRK07576 short chain dehydroge 21.9 2.9E+02 0.0063 25.6 6.8 67 122-188 8-95 (264)
461 COG0407 HemE Uroporphyrinogen- 21.5 1.1E+02 0.0024 30.7 3.9 61 111-172 230-294 (352)
462 PRK06500 short chain dehydroge 21.5 3.9E+02 0.0084 24.1 7.5 67 123-189 6-90 (249)
463 COG5379 BtaA S-adenosylmethion 21.2 1.6E+02 0.0035 29.0 4.7 71 150-221 294-368 (414)
464 PRK09496 trkA potassium transp 21.1 1.3E+02 0.0028 30.6 4.5 64 123-186 231-304 (453)
465 PRK08177 short chain dehydroge 21.1 3.4E+02 0.0073 24.3 6.9 65 125-189 3-81 (225)
466 PRK06701 short chain dehydroge 20.9 2.4E+02 0.0051 26.8 6.0 98 122-219 45-181 (290)
467 cd08292 ETR_like_2 2-enoyl thi 20.9 4.4E+02 0.0095 24.8 8.0 92 118-220 135-239 (324)
468 PRK07806 short chain dehydroge 20.6 3.1E+02 0.0068 24.8 6.6 96 123-218 6-133 (248)
469 TIGR00675 dcm DNA-methyltransf 20.5 98 0.0021 30.3 3.3 62 126-187 1-67 (315)
470 PF02826 2-Hacid_dh_C: D-isome 20.5 50 0.0011 29.3 1.1 84 121-217 34-125 (178)
No 1
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=5.9e-43 Score=326.68 Aligned_cols=285 Identities=38% Similarity=0.662 Sum_probs=211.1
Q ss_pred CChHHHHHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHc
Q 016157 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 82 ~~~~~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
...++++++|+.+|+.++.+|+.+++.+||.+..|+...+.|..+||+|||+|.++...|...++|+|++..++..|++.
T Consensus 5 ~~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 5 QLTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred hHHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccC
Confidence 35688999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CC-eEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhhhccccccchHHH
Q 016157 162 GH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKY 240 (394)
Q Consensus 162 ~i-~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
+. ....+|+..+|+++.+||.+++++++||+.+.+|+..+|+++.|+|+|||..++++|+.++........|. .+
T Consensus 85 ~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~~s~~~----~~ 160 (293)
T KOG1331|consen 85 GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSSKSNYK----KG 160 (293)
T ss_pred CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCcccccchh----cc
Confidence 87 69999999999999999999999999999999999999999999999999999999999998776554443 22
Q ss_pred HHhHhCCCCCCccCCCccccccccccccCCCcccCCCCCCCCCccccccccccccCCCCccccccccccCCCcceeeecc
Q 016157 241 VEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWH 320 (394)
Q Consensus 241 ~~~w~~~~~~~~~~~~~~~le~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lvpW~ 320 (394)
.+.|.....+.+.... .....+.+..|.... .++.++. -.+....+.+.+++||.++||+
T Consensus 161 ~~~~~g~~~dv~~~~~-------~~~~~~~~e~~~~~~---------~~~~~~~----~~~~~l~~~p~~e~~~~~q~~~ 220 (293)
T KOG1331|consen 161 VEEVRGDEQDVLAAWG-------LQSEQDRGETQLGNG---------MSLKVKN----RNMAALKVIPPEEQQDVLQPWK 220 (293)
T ss_pred hhhccCCccceecccc-------cccccccccccccCC---------Ccccccc----ccccccccCCchhhcchhcccc
Confidence 2333222111110000 000000000000000 0011110 1112233445788999999998
Q ss_pred cCCCCcccccchhhhhhccccccCCCCCCeeEecccccccchHHHHHhcccCCcEEEEeeeccCCeEEEEEEcC
Q 016157 321 LPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS 394 (394)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RyyH~F~~gELe~l~~~~~~~~i~~~~~d~~Nwcvi~~k~~ 394 (394)
-+....+. -........+..+...+.+|+||||||++|||.+||.++-+++|+.++||+||||||++|..
T Consensus 221 ~~~~~~~~----~~~~De~~~~~~~~~~~~t~~RYYHvfregEL~~lv~~~~~~~l~S~~~e~gnwcvVaeK~~ 290 (293)
T KOG1331|consen 221 EPIQAPKS----LPPNDEKSTESPSQLRESTFQRYYHVFREGELAELVESVVGLRLLSSGYERGNWCVVAEKKQ 290 (293)
T ss_pred cccccccc----cCCcchhcccchhhhcchhheeeeEecchHHHHHHHhhccceEeeeeccccCCeEEEEeecc
Confidence 43221110 00000000111223455799999999999999999999867999999999999999999963
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=2.6e-23 Score=194.06 Aligned_cols=134 Identities=28% Similarity=0.439 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIK 156 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~ 156 (394)
++.|+++|++++..||..+ ++.|++.........+|.+|||||||||.++. ..+..+|+|+|+|+.||+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~ 89 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE 89 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence 4689999999999998744 78898877766666789999999999999753 244779999999999999
Q ss_pred HHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 157 ICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 157 ~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.|+++ +++|+++|+++|||++++||+|++.+.|+++++ +.++|+|+.|+|||||++++..+....
T Consensus 90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99998 378999999999999999999999999999998 899999999999999999999887653
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=1.6e-22 Score=189.79 Aligned_cols=135 Identities=29% Similarity=0.550 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHH
Q 016157 87 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSL 154 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~ 154 (394)
.+++|.++|+++++.||.. .+..|++...-+....+|.+|||+|||||..+. ..+...|+|+|+|++|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3567999999999999974 367787644444456788999999999998643 2456799999999999
Q ss_pred HHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 155 IKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 155 l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++.|+++ +++++++|++++|+++++||+|++.++++++++ +.++|+|++|+|||||+++|..++...
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999986 589999999999999999999999999999998 789999999999999999999987654
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=9.5e-21 Score=180.97 Aligned_cols=134 Identities=28% Similarity=0.402 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLI 155 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l 155 (394)
.+.+.++|+++|..|+... +..|+....-...++++.+|||+|||+|.++.. .+...|+|+|+|++|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4568889999999998622 455766544444667889999999999986431 3456999999999999
Q ss_pred HHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 156 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 156 ~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+.|+++ +++++++|+.++|+++++||+|+++.++||+++ +..+|+++.|+|||||++++..|..+.
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999754 478999999999999999999999999999988 889999999999999999999987643
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.85 E-value=3.9e-21 Score=177.16 Aligned_cols=153 Identities=23% Similarity=0.324 Sum_probs=133.1
Q ss_pred ccccccCCCCCCCCChHHHH-HHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCccc---
Q 016157 69 TGEDQRCSSSSIKSTPELEK-KYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--- 137 (394)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l--- 137 (394)
.....+|+++++.+..+.++ +.|+.+|+.+|..||.. .|+.|+.+..--.....+.++||++||||..+
T Consensus 39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFri 118 (296)
T KOG1540|consen 39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRI 118 (296)
T ss_pred cccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHH
Confidence 34567999999999988887 56999999999999874 38889887766666777899999999999864
Q ss_pred -cc------CCCcEEEEEeCCHHHHHHHHHcC----------CeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 138 -GL------NPDCFFVGCDISPSLIKICVDRG----------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 138 -~~------~~~~~v~gvD~S~~~l~~a~~~~----------i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
.. ..+.+|+++|+|+.||..++++. +.|+.+|+++|||++++||+.++.+.|..+++ +.+
T Consensus 119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th---~~k 195 (296)
T KOG1540|consen 119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH---IQK 195 (296)
T ss_pred HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---HHH
Confidence 22 23479999999999999998872 78999999999999999999999999999999 899
Q ss_pred HHHHHHhccccCcEEEEEEcCccc
Q 016157 201 AIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 201 ~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+|+|++|+|||||+|++..|+...
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999999999987654
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.73 E-value=1.9e-17 Score=162.17 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++++.+++||+|++..+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3567999999999997542 4577999999999999999865 47899999999988788999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+.+ +..+|+++.++|||||.+++.++..
T Consensus 210 Hv~d---~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVAN---PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9998 7899999999999999999998754
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=2.6e-17 Score=153.87 Aligned_cols=132 Identities=23% Similarity=0.387 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHH
Q 016157 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l 155 (394)
.+.++++|++++..|+.. .+..|+........++++.+|||+|||+|.++. . .++..++|+|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 568899999999999863 345555433333356788999999999999753 2 3567999999999999
Q ss_pred HHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 156 ~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.|+++ +++++.+|+.++++++++||+|++..+++|+++ +..+|+++.++|||||++++.....
T Consensus 84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 998875 478899999999888899999999999999988 7899999999999999999876543
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.73 E-value=2.1e-17 Score=144.79 Aligned_cols=113 Identities=30% Similarity=0.436 Sum_probs=91.2
Q ss_pred cccccchHHHHHHHc-CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCc
Q 016157 104 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 104 ~~~~~~~~~l~~~l~-~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~f 180 (394)
..+.+.+..+...+. ..+++.+|||||||+|.++.. ..+.+++|+|+++.+++. ........+....+.++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence 334556666655444 467889999999999998653 345599999999999988 44555566556666778999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|+++.+|+|+++ +..+|+++.++|||||.+++.++..
T Consensus 80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999999997 8999999999999999999999764
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.72 E-value=1.2e-17 Score=132.93 Aligned_cols=88 Identities=34% Similarity=0.577 Sum_probs=76.3
Q ss_pred EEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHH
Q 016157 127 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 127 LDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
||+|||+|..+.. .++..++|+|+++.+++.++++ ++.+..+|+.++|+++++||+|++..+++|+.+ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence 8999999997542 3688999999999999999987 466999999999999999999999999999954 89
Q ss_pred HHHHHHHhccccCcEEEE
Q 016157 200 KAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~lli 217 (394)
++++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 10
>PRK05785 hypothetical protein; Provisional
Probab=99.72 E-value=2.9e-17 Score=153.68 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhcccccccc-------ccchHH-HHHHH-cCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFL-NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~-------~~~~~~-l~~~l-~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~ 154 (394)
..+.+.++|++++..|+..+ ...|++ +...+ ...+++.+|||||||||.++.. ..+..|+|+|+|++|
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M 86 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM 86 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 45678899999999998743 344654 33333 2335578999999999987542 115699999999999
Q ss_pred HHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccC
Q 016157 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 155 l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpG 212 (394)
++.|+++ ..++++|++++|+++++||+|++..++||+++ +.++|+++.|+|||.
T Consensus 87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence 9999886 36789999999999999999999999999988 789999999999994
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=5.5e-17 Score=153.80 Aligned_cols=133 Identities=25% Similarity=0.339 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhccccccccccchHHH-HHHHcCCC--CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKV-ATFLNSLP--SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l-~~~l~~l~--~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
+++.+.+.|++.+..|+..... ...+ ..++..++ ++.+|||+|||+|.++.. ..+..++|+|+|+.|++.|+++
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 4677888999999999853321 1122 22223232 467999999999987542 3567999999999999999987
Q ss_pred --CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 --~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...++++|+..+|+++++||+|+++.+++++.+ +..+|.++.++|||||.+++.++...
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 357899999999998899999999999999988 78999999999999999999988653
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=4.9e-17 Score=154.69 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.++.+|||||||+|.++. ..++..|+|+|+|+.|++.|++++++++++|+.+++ .+++||+|++..++||+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d-- 104 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE-- 104 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC--
Confidence 467899999999999754 246789999999999999999999999999998875 4679999999999999988
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+++++.++|||||++++.++.
T Consensus 105 -~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 105 -HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 789999999999999999998764
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=6.6e-17 Score=153.88 Aligned_cols=127 Identities=23% Similarity=0.354 Sum_probs=100.8
Q ss_pred HHHhhcccccccccc----------chHHHHHHHcCC-CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 94 VYDAIAPHFSSTRFA----------KWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 94 ~Yd~~a~~y~~~~~~----------~~~~l~~~l~~l-~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
.||.++.+|+...|. .|..+..++..+ .++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.|++
T Consensus 5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 366666666653322 355566666654 3457999999999997532 446799999999999999987
Q ss_pred c--------CCeEEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 161 R--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 161 ~--------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +++++++|+.+++ +.+++||+|++..+++|+.+ +..+|+++.++|||||++++..++..
T Consensus 85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 5 3678999998874 55789999999999999988 78999999999999999999987754
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=1.8e-16 Score=157.03 Aligned_cols=99 Identities=25% Similarity=0.376 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5678999999999987532 2367999999999999988764 4789999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+|+++ +..+++++.|+|||||+|++.+|..
T Consensus 197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99998 7899999999999999999998864
No 15
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.64 E-value=2.3e-16 Score=141.64 Aligned_cols=144 Identities=24% Similarity=0.425 Sum_probs=117.4
Q ss_pred HHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CC-CCCCCccEEEehhh
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-YRSDFGDAAISIAV 188 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp-~~~~~fD~Vi~~~v 188 (394)
..+...++||++|||+|||.|.++.. ..++..+|+|++++.+..|.++|+.++++|+.+ |+ |++++||.||++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 34455678999999999999998653 578899999999999999999999999999976 43 88999999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc--chhhhh-ccccccchHHHHHhHhCCCCCCccCCCccccccccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE--QEDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~--~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~le~i~e 265 (394)
|+++.. +..+|+||.|+ |...+++++++. ...... +.+..|.+..+...||. .|++++.+..+++.+-+
T Consensus 85 LQ~~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd--TPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 85 LQAVRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD--TPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHhHhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC--CCCcccccHHHHHHHHH
Confidence 999987 88999999876 556677766553 333333 36778888888899997 67888888777776654
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.63 E-value=4.1e-16 Score=143.97 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=88.3
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+|.+|||||||-|.++. +..|..|+|+|+++.+++.|+.+ + +++.+..++++....++||+|+|..||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 78999999999998865 35679999999999999999976 3 4588888888876668999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+ +..+++.+.+.+||||.+++++.....
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 9 788999999999999999999987543
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=1.2e-15 Score=126.06 Aligned_cols=97 Identities=32% Similarity=0.530 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeec-CCCCCCCCCccEEEehh-
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~-~~lp~~~~~fD~Vi~~~- 187 (394)
|+.+|||||||+|.++. ..++.+++|+|+|+.|++.|+++ +++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999999753 24889999999999999999887 689999999 33333 45699999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++...+.+.++|+.+.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66655543447899999999999999999975
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=5.4e-15 Score=141.47 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+|||||||+|..+.. ..+..|+|+|+|+.|++.|+++ ++.+..+|+...|+++++||+|++..+++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457889999999999986432 2467999999999999999986 47889999999999889999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|++... +..+|+++.++|||||+|++..+...
T Consensus 129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 987433 78999999999999999999987543
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=4.1e-15 Score=140.97 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCccCcccc------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 120 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
++++.+|||||||+|..+. ..++.+++|+|+|+.|++.|+++ +++++++|+.++|+. .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4678899999999999742 24778999999999999999876 478999999988764 4899999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.++||++..+ +..+++++.++|||||.|++...
T Consensus 132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999998644 68999999999999999999864
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=2.4e-15 Score=131.78 Aligned_cols=97 Identities=34% Similarity=0.584 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~ 186 (394)
..+.+|||+|||+|.++. ..++.+++|+|+|+.|++.|+++ +++++++|+.+++ +. +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 356899999999999742 36688999999999999999985 5799999999987 55 899999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+++|+.+ +..+|+++.++|++||.+++..+.
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999988 789999999999999999999876
No 21
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=4.4e-15 Score=133.31 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc---
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--- 161 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--- 161 (394)
......+|+++++.|. ...+..+..++..-.. ..|||||||||..... .|+..|+++|+++.|-+++.++
T Consensus 46 ~~~ft~~yne~~~~yk---relFs~i~~~~gk~~K-~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 46 NSNFTSIYNEIADSYK---RELFSGIYYFLGKSGK-GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hhHHHHHHHHHHHHHH---HHHHhhhHHHhcccCc-cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 3445667888888773 2223333344443333 3689999999998775 4688999999999999998776
Q ss_pred ----CCe-EEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 162 ----GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 162 ----~i~-~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++. |+.++.+++| +.++++|+|++..+|....+ +.+.|+++.|+|||||++++......+
T Consensus 122 ~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 122 KKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 455 8999999999 88999999999999999988 889999999999999999998765544
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1.3e-14 Score=132.97 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=86.8
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCC
Q 016157 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 109 ~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~ 179 (394)
+-+.+...+... ++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ ++++...|+.++++ +++
T Consensus 18 ~~~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 95 (197)
T PRK11207 18 THSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGE 95 (197)
T ss_pred ChHHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCC
Confidence 345666666544 457999999999997542 4467999999999999998865 46788899988776 467
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+|+++.++||++... +..+++++.++|||||.+++..
T Consensus 96 fD~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCEEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999987533 7899999999999999966543
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=1.1e-14 Score=138.60 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+.++.+|||||||+|.++. ..++..|+|+|+|+.|++.|+++ ++.++.+|+..++ ..++||+|+++.++||++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 4567899999999998753 35678999999999999999987 6889999998765 356899999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ ...+|+++.++|||||.+++..+.
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCC
Confidence 8 789999999999999999997643
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.57 E-value=1e-14 Score=137.48 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCccCcccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
++++.+|||||||+|.++. . .++..++|+|+|+.|++.|+++ +++++++|+.+++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 3577899999999999753 1 3678999999999999999875 368999999998864 4899999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..++||+++.+ +..+|+++.++|||||.+++..+.
T Consensus 129 ~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 129 NFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ecchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence 99999997644 789999999999999999998753
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=2.6e-14 Score=130.78 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccE
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~ 182 (394)
..+...+...+ +.+|||+|||+|.++.. ..+..|+|+|+|+.|++.++++ + +.+..+|+...++. ++||+
T Consensus 20 ~~l~~~~~~~~-~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 20 SAVREAVKTVA-PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHHHhccCC-CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCE
Confidence 34555555444 45999999999997532 3577999999999999988755 3 56677787766653 57999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+++.++||++... +..+++++.++|||||++++..|.
T Consensus 98 I~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 98 IFSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999997543 789999999999999998777664
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.56 E-value=1.2e-14 Score=143.11 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=104.6
Q ss_pred CCChHHHHHHHHH--HHHhhcccccccc-ccchHH-H-HHHHc---CCCCCCEEEEEcCccCcccc----cCCCcEEEEE
Q 016157 81 KSTPELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-V-ATFLN---SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGC 148 (394)
Q Consensus 81 ~~~~~~~~~~v~~--~Yd~~a~~y~~~~-~~~~~~-l-~~~l~---~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gv 148 (394)
.+.+..-+++... +|+.++..|+... ...|.. + ...+. ...++.+|||||||+|.++. ..++..++|+
T Consensus 64 ~~~~~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgV 143 (340)
T PLN02490 64 ASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTIL 143 (340)
T ss_pred ccccchhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEE
Confidence 3444444444444 5788888888632 233332 1 11222 22467899999999998642 2456799999
Q ss_pred eCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 149 DISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 149 D~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+|+.|++.|+++ +++++.+|+.++++.+++||+|++..+++|+++ +..+|+++.++|||||++++...
T Consensus 144 D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 144 DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999886 688999999999998899999999999999998 67899999999999999988653
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.56 E-value=2.3e-14 Score=132.12 Aligned_cols=104 Identities=24% Similarity=0.377 Sum_probs=87.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..++..++++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.+.++|+.+ |+++++||+|++.
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 33445566778899999999999754 24678999999999999999985 67899999988 8889999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+++|++. +.+.++++++.|++ ++.++|..+
T Consensus 113 ~vL~hl~p-~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHINP-DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ChhhhCCH-HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 99999974 44789999999998 567777765
No 28
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=2.8e-14 Score=132.28 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHHHHHhhccccccccccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-----
Q 016157 91 VHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----- 161 (394)
Q Consensus 91 v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----- 161 (394)
+.+.|..-...|+. ..+-+.+..++..+ +++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+.
T Consensus 3 Wd~ry~~~~~~w~~--~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~ 80 (213)
T TIGR03840 3 WHERWQEGQIGFHQ--SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP 80 (213)
T ss_pred HHHHHhcCCCCCcc--CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence 45556554333432 23334555565544 677899999999999754 36788999999999999986331
Q ss_pred --------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 --------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 --------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++++++|+.+++.. .+.||.|+...+++|++... +..+++.+.++|||||++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 467899999988743 46799999999999997655 78899999999999999888877654
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=2.1e-14 Score=133.91 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=87.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.+.+|||+|||+|.++. ..+...++|+|+++.+++.++++ ++.++.+|+.++++.+++||+|++..++||+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 34689999999998643 35667899999999999999887 478999999999988899999999999999988
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+..+|.++.++|||||.+++.++...
T Consensus 114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 114 ---LSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 78899999999999999999987653
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=5.5e-15 Score=120.52 Aligned_cols=87 Identities=31% Similarity=0.591 Sum_probs=71.7
Q ss_pred EEEEcCccCccccc-------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEeh-hhhhh
Q 016157 126 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (394)
Q Consensus 126 VLDvGCG~G~~l~~-------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~h 191 (394)
|||+|||+|..+.. .+...++|+|+|+.|++.++++ .++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999997532 2347999999999999999987 4699999999999888999999995 55999
Q ss_pred cCChhHHHHHHHHHHhccccCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG 213 (394)
+.+.+ ...+++++.++|||||
T Consensus 81 ~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-HHHHHHHHHHTEEEEE
T ss_pred CCHHH-HHHHHHHHHHHhCCCC
Confidence 87655 8999999999999998
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=2.8e-14 Score=140.37 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHH--------cCCeEEEeecCCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~--------~~i~~~~~D~~~lp~~~~~ 179 (394)
..+...+..+ +|.+|||||||+|.++.. .....|+|+|+|+.|+..++. .++.++.+|+.++|+ ++.
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3344444433 568999999999997532 222369999999998865332 157899999999998 789
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||+|+|..+++|+.+ +..+|++++++|||||.+++.++..
T Consensus 190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 999999999999988 7899999999999999999987543
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=2.8e-14 Score=136.94 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=88.3
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
..+.++.+|||+|||+|..+. ..+..+|+|+|+++.|++.|+++ +++++.+|+.++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999998532 24556899999999999999875 568899999999988889999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+++|+++ ...+++++.++|||||+|++..+..
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999987 6789999999999999999987653
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=3.4e-14 Score=146.90 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
+.++.+|||||||+|..+. ...+..++|+|+|+.+++.|+++ .++++.+|+..+++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4677899999999997532 23467999999999999999875 46899999999988888999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|+++ +..+|+++.++|||||++++..+...
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9998 78999999999999999999987654
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=3.8e-14 Score=137.29 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=85.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccE
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
+.+...+..++++ +|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++...|+...++ +++||+
T Consensus 110 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~ 187 (287)
T PRK12335 110 SEVLEAVQTVKPG-KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDF 187 (287)
T ss_pred HHHHHHhhccCCC-CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccE
Confidence 3444454444554 999999999997532 3578999999999999988765 46778888877665 678999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|++..++||+... +...+++++.++|+|||++++..+
T Consensus 188 I~~~~vl~~l~~~-~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 188 ILSTVVLMFLNRE-RIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEEcchhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999998753 378999999999999999877654
No 35
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=6.3e-14 Score=131.46 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=87.6
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCccCccccc--------CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCC
Q 016157 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYR 176 (394)
Q Consensus 109 ~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--------~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~ 176 (394)
.|..+........++.+|||||||+|.++.. .++.+++|+|+|+.|++.|+++ ++++...+...++..
T Consensus 47 ~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~ 126 (232)
T PRK06202 47 LYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAE 126 (232)
T ss_pred HHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccccc
Confidence 3444444443445678999999999986321 3456999999999999999886 577888888888877
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++||+|+++.++||+++++ ...+|+++.++++ |.+++..+...
T Consensus 127 ~~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccC
Confidence 78999999999999998754 5789999999998 56666665543
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=4.1e-15 Score=120.61 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=55.7
Q ss_pred EEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC--CCCCccEEEehhhhhhcC
Q 016157 127 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY--RSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 127 LDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~--~~~~fD~Vi~~~vl~hl~ 193 (394)
||||||+|.++.. .+..+++|+|+|+.|++.|+++ .......+..+... ..++||+|+++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999998653 5788999999999999777766 12334444333321 125999999999999996
Q ss_pred ChhHHHHHHHHHHhccccCcEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~l 215 (394)
+ +..+|+.+.++|||||+|
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 6 889999999999999986
No 37
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=3.1e-14 Score=132.48 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=81.7
Q ss_pred CCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---------C----CeEEEeecCCCCCCCCCccEEEehh
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---------~----i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
|.+|||+|||+|.+... .-+..|+|+|+++.|++.|+++ + +++...|++.+ .+.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 47899999999998753 4568999999999999999987 1 45566666665 35599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++|+.+ +..++..+.++|||||+++|++.....
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999999 899999999999999999999876543
No 38
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.51 E-value=1.5e-13 Score=128.28 Aligned_cols=132 Identities=26% Similarity=0.432 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhcccccccc-------ccchHH-HHHHHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPS 153 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~-------~~~~~~-l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~ 153 (394)
.++.+.+.|+.++..|+... +..|.. +...+ ...++.+|||+|||+|.++. ..+ ..+++|+|+++.
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 35677888999988887311 222322 22333 24467899999999999753 233 579999999999
Q ss_pred HHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 154 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 154 ~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++.++++ .+.++.+|+.++++..+.||+|++..+++|+.+ +..+|+++.++|+|||.+++..+..
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecC
Confidence 99999875 368899999988877789999999999999988 7899999999999999999887654
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=8.5e-14 Score=135.99 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHH---c-----CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~---~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+|.+|||||||+|.++.. ..+ ..|+|+|+|+.|+..++. . .+.+..+++.++|.. .+||+|++++++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4578999999999997432 223 379999999999875432 1 457788888888864 589999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+|+.+ +..+|++++++|||||.|++.++..
T Consensus 199 ~H~~d---p~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 199 YHRKS---PLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred hccCC---HHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 99988 7899999999999999999987543
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=1.9e-13 Score=126.23 Aligned_cols=128 Identities=28% Similarity=0.460 Sum_probs=99.4
Q ss_pred HHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCC-cEEEEEeCCHHHHHHHH
Q 016157 92 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV 159 (394)
Q Consensus 92 ~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~-~~v~gvD~S~~~l~~a~ 159 (394)
+++|+.++.+|+... ...|...........++.+|||+|||+|.++. ..+. ..++|+|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 456777777776532 23333322222234477899999999999753 2333 68999999999999998
Q ss_pred Hc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 160 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 160 ~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++ ++.++.+|+.++++..+.||+|++..+++|+.+ +..+++++.+.|+|||++++..+..
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 75 478999999998887789999999999999988 7899999999999999999987643
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.49 E-value=6.2e-14 Score=134.24 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccCcc-------c-ccC-----CCcEEEEEeCCHHHHHHHHHc--------------------------
Q 016157 121 PSGSLVLDAGCGNGKY-------L-GLN-----PDCFFVGCDISPSLIKICVDR-------------------------- 161 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~-------l-~~~-----~~~~v~gvD~S~~~l~~a~~~-------------------------- 161 (394)
.++.+|||+|||+|.- + ... ++..|+|+|+|+.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999962 1 111 257999999999999999873
Q ss_pred --------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 --------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.++|+.+.+++.+.||+|+|..+++|++.+. +.+++++++++|+|||.+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999887788999999999999997644 689999999999999999986
No 42
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.47 E-value=9.6e-14 Score=125.67 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=99.3
Q ss_pred cccccccchHHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCC
Q 016157 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY 175 (394)
Q Consensus 102 y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~ 175 (394)
|...|.++..++...+... +..+|.|+|||+|..+ +..|+..++|+|-|+.|++.|+++ +.+|..+|+.++..
T Consensus 11 F~~eRtRPa~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p 89 (257)
T COG4106 11 FEDERTRPARDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP 89 (257)
T ss_pred HHHhccCcHHHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC
Confidence 4556667776666655433 3458999999999864 348999999999999999999988 78999999999853
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
...+|+++++++++++++ -.+.|..+...|.|||.+.+..+...++
T Consensus 90 -~~~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 90 -EQPTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred -CCccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCc
Confidence 567899999999999999 6789999999999999999998765444
No 43
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=3.4e-13 Score=125.52 Aligned_cols=100 Identities=32% Similarity=0.482 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++.. .+...++|+|+++.+++.++++ ++.+..+|+..+++.++.||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 466788999999999997532 2567999999999999999876 47889999998888889999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+++|+.+ +..+++++.++|||||.+++..+.
T Consensus 96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLED---PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccCC---HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999998 788999999999999999998754
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.47 E-value=2.5e-13 Score=141.90 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=88.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
+....++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++++|+.++| +++++||+|+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 3344567899999999998642 36788999999999999999875 3577889999887 7789999999
Q ss_pred ehhhhhhcCC----------hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVLHHLST----------ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl~hl~~----------~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++.++||+.. .+.+..+|+++.++|||||++++......
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999998631 23478999999999999999999875443
No 45
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.46 E-value=5.6e-13 Score=124.07 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHc--CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH-c-
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-R- 161 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~-~- 161 (394)
.+.+.+.|+.-...|.. ..+-+.+..++. .++++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+ +
T Consensus 3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENG 80 (218)
T ss_pred HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcC
Confidence 34566777654333432 234455556554 34567899999999999754 3678899999999999998643 2
Q ss_pred -----------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 162 -----------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 162 -----------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++.++|+.+++.. ...||+|+...+++|++... +..+++.+.++|||||++++.+...
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 356789999988643 25899999999999997654 7999999999999999866655443
No 46
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.45 E-value=9.5e-13 Score=128.41 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc------C--CeEEEeecCC-CCCCCC---
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD--- 178 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~------~--i~~~~~D~~~-lp~~~~--- 178 (394)
+...++++.+|||+|||+|..+. ..+ +..|+|+|+|+.|++.|+++ + +.++++|+.+ +++...
T Consensus 57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccccc
Confidence 33445677899999999999643 233 67999999999999998775 2 3567899876 344332
Q ss_pred -CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 179 -FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 179 -~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
...++++...++|++..+ ...+|++++++|+|||.|+|.+-...+
T Consensus 137 ~~~~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred CCeEEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 233455557888887544 789999999999999999998754433
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=3.6e-13 Score=125.28 Aligned_cols=93 Identities=26% Similarity=0.460 Sum_probs=81.0
Q ss_pred EEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 125 ~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+|||||||+|.++. ..++..++|+|+|+.+++.|+++ .++++.+|+...|++ ++||+|+++.+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 79999999999643 24568999999999999999875 358899999776664 589999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+ +..+|+++.++|||||++++..+.
T Consensus 81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KD---KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 88 789999999999999999998864
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=4.3e-13 Score=121.77 Aligned_cols=109 Identities=25% Similarity=0.302 Sum_probs=83.8
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCcc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD 181 (394)
.+.+...+..+++ .++||+|||.|+.+. +..|..|+++|+|+..++.+++. .++....|+.+..++ +.||
T Consensus 19 hs~v~~a~~~~~~-g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD 96 (192)
T PF03848_consen 19 HSEVLEAVPLLKP-GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYD 96 (192)
T ss_dssp -HHHHHHCTTS-S-SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEE
T ss_pred cHHHHHHHhhcCC-CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcC
Confidence 4556666666665 599999999999754 36789999999999988776543 467789999888774 6899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|++..|++|+..+. +..+++.|...++|||++++.++.
T Consensus 97 ~I~st~v~~fL~~~~-~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQREL-RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEESSGGGS-GGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEEEeccCCHHH-HHHHHHHHHhhcCCcEEEEEEEec
Confidence 999999999998654 789999999999999999997653
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=8e-13 Score=126.05 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||.|.++.+ .-+++|+|+++|+++.+.++++ +++++..|..++. +.||-|+++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 578999999999999997542 3478999999999999999885 4668888877764 4599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++|+.... ...+++.+.++|+|||++++-+.....
T Consensus 146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999998744 789999999999999999999876554
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=1.6e-13 Score=131.73 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||.|.++.. ..++.|+|+.+|++..+.|+++ .+++..+|..+++. +||.|+++.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 478999999999999997542 2378999999999999999876 36789999888754 899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+++|+.... ...+++.+.++|||||++++..+.....
T Consensus 136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 999997543 7899999999999999999988776543
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=1.6e-12 Score=118.24 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=80.8
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
..++++.+|||+|||+|..+. ..++.+|+|+|+++.|++.|+++ +++++.+|+.+++. .++||+|++.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 456678999999999998532 35778999999999999999875 47899999999877 7799999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. +.+ +..+++++.++|||||++++....
T Consensus 120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5 233 678999999999999999998644
No 52
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.44 E-value=7.1e-13 Score=120.29 Aligned_cols=103 Identities=27% Similarity=0.536 Sum_probs=85.4
Q ss_pred CCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCC--eEEEeecCC-CCCCCCCccEEEehhhhhhcCC---
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGH--EVLVADAVN-LPYRSDFGDAAISIAVLHHLST--- 194 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i--~~~~~D~~~-lp~~~~~fD~Vi~~~vl~hl~~--- 194 (394)
...|||||||+|.-... .++...+|+|+|+.|++.|.++.+ .++.+|+-. +||+.++||.+|++..++++-+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~ 130 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK 130 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence 57899999999986543 567899999999999999998743 578888855 8999999999999988877633
Q ss_pred -----hhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 195 -----ESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 195 -----~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
..|+..++..++.+|++|++.++..+...+.
T Consensus 131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred cccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 2346778889999999999999998865543
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.43 E-value=9.4e-13 Score=122.31 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC-CCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~h 191 (394)
.+.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ ++.+..+|+.+++.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 467999999999997532 2345799999999999998875 367778888777644 378999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.+ +..+|+++.++|+|||.+++..+.
T Consensus 125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 VPD---PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEecC
Confidence 988 788999999999999999988764
No 54
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.42 E-value=7.5e-13 Score=120.85 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=82.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-C-CCCCCCccEEEehh
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIA 187 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-p~~~~~fD~Vi~~~ 187 (394)
+..+...++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|++++++++++|+.+ + ++.+++||+|+++.
T Consensus 4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 444455567888999999999997542 345678999999999999998899999999976 4 36778999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++||+.+ +..+|+++.|+++ .+++.+
T Consensus 84 ~l~~~~d---~~~~l~e~~r~~~---~~ii~~ 109 (194)
T TIGR02081 84 TLQATRN---PEEILDEMLRVGR---HAIVSF 109 (194)
T ss_pred HhHcCcC---HHHHHHHHHHhCC---eEEEEc
Confidence 9999988 7889999988765 445554
No 55
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.42 E-value=8.8e-13 Score=122.54 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=80.7
Q ss_pred HHHHHcC-CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCcc
Q 016157 113 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 113 l~~~l~~-l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD 181 (394)
+...+.. ..++.+|||+|||+|.++.. ..+..++|+|+|+.|+..|+++ ++.+.++|+..++ ++||
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD 121 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD 121 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence 4444443 45688999999999997542 3456999999999999999875 4678999998875 7899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
+|++..+++|++... +..+++++.+++++++.+.+
T Consensus 122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEEE
Confidence 999999999987544 78899999999987655443
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.41 E-value=7e-13 Score=133.33 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ ++++..+|..++ +++||.|+++.+++|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 357889999999999997542 3467999999999999999886 356777787665 478999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+.... +..+++++.++|||||++++.++...
T Consensus 241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 97543 67899999999999999999987654
No 57
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=120.83 Aligned_cols=136 Identities=23% Similarity=0.305 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcC--CCCCCEEEEEcCccCccc----cc--CCCcEEEEEeCCHHHHHHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~--l~~g~~VLDvGCG~G~~l----~~--~~~~~v~gvD~S~~~l~~a 158 (394)
...++..+|-..-..|-..|+-..++.-.++.. ..++ +|||||||.|..+ +. .++..++++|.|+.+++..
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~-~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAE-TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChh-hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence 346788888887777765553222333333321 1122 8999999999853 33 3448999999999999999
Q ss_pred HHc------CCeEEEeecCC----CCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 159 VDR------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 159 ~~~------~i~~~~~D~~~----lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++ .+.....|+.. -|...+++|+|++++||..++... ...+++++.++|||||.+++-.++..+
T Consensus 114 k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 114 KKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccch
Confidence 887 34445555543 345678999999999999998654 799999999999999999999987644
No 58
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=6.7e-13 Score=127.58 Aligned_cols=91 Identities=35% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccCccccc----CC---CcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~~---~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
.+.+|||+|||+|.++.. .+ +..++|+|+|+.|++.|+++ ++.+.++|+.++|+++++||+|+++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 446899999999997532 22 34799999999999999877 688999999999999999999998653
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+ ..++++.|+|||||+|++..+..
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24688999999999999987654
No 59
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.40 E-value=7.9e-13 Score=119.18 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccCccccc-CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 121 PSGSLVLDAGCGNGKYLGL-NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+...++||+|||+|.++.. .+ .-.++++|+|+.+++.|+++ +++++++|+.+. .+.+.||+|++..+++++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 3447999999999998653 23 23899999999999999998 689999999775 4678999999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.+.+..++..+...|+|||.+++..|.
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 7655889999999999999999999874
No 60
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.38 E-value=2.9e-13 Score=123.45 Aligned_cols=138 Identities=22% Similarity=0.318 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhhccccccc-----cccchHHHHHHHcCCCCC--CEEEEEcCccCcccccCCC--cEEEEEeCCHHHH
Q 016157 85 ELEKKYVHRVYDAIAPHFSST-----RFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGLNPD--CFFVGCDISPSLI 155 (394)
Q Consensus 85 ~~~~~~v~~~Yd~~a~~y~~~-----~~~~~~~l~~~l~~l~~g--~~VLDvGCG~G~~l~~~~~--~~v~gvD~S~~~l 155 (394)
.....||...||..++.|+.. .|.....+.+.+.....| .++||+|||||..-...+. .+++|+|+|.+|+
T Consensus 81 ~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl 160 (287)
T COG4976 81 KPPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML 160 (287)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHH
Confidence 444589999999999999863 344455667777665555 7999999999987543222 3799999999999
Q ss_pred HHHHHcCC--eEEEeecCC-CC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 156 KICVDRGH--EVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 156 ~~a~~~~i--~~~~~D~~~-lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
++|.++++ .+.++|+.. ++ ..++.||+|++..|+.++.. ...++.-+...|+|||.|.+++-.....
T Consensus 161 ~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 161 AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 99999964 345555543 22 45688999999999999998 8899999999999999999998655443
No 61
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=4.2e-12 Score=131.36 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecC--CCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~--~lp~~~~~fD~Vi~~~vl~hl 192 (394)
++.+|||||||+|.++.. ....+++|+|+|+.|++.+++. ++.++++|+. .+++++++||+|++..+++|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 567999999999997542 2345899999999999988654 5789999996 467778899999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++.+ +..+++++.++|||||++++.....
T Consensus 117 ~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 117 SDKE-VENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CHHH-HHHHHHHHHHhcCCCeEEEEEeccC
Confidence 8754 6899999999999999999986544
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=1.3e-11 Score=111.74 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.... ..+..+|+|+|+|+.|++.++++ +++++++|+.+++. .++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-hh
Confidence 37899999999998532 35667999999999999887654 47899999998753 67899999976 33
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ...+++.+.++|+|||++++..
T Consensus 120 ---~---~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ---S---LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---C---HHHHHHHHHHhcCCCCEEEEEc
Confidence 3 4568888999999999999874
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=9.2e-12 Score=104.14 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||+|||+|.++. ..+...++|+|+|+.+++.++++ +++++.+|+.. ++...++||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4567899999999999743 35668999999999999998764 46777888765 333346899999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++ ...+++++.++|||||.+++.+.
T Consensus 97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGGL------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence 5432 46899999999999999999864
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.32 E-value=8.3e-12 Score=119.41 Aligned_cols=135 Identities=22% Similarity=0.378 Sum_probs=95.4
Q ss_pred cchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHH--c--C--C--eEEEeecCCCCCC
Q 016157 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVD--R--G--H--EVLVADAVNLPYR 176 (394)
Q Consensus 108 ~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~--~--~--i--~~~~~D~~~lp~~ 176 (394)
-.|.++...+..+ .|.+|||||||+|+++-. ..|. .|+|+|++....-...- + + . .++..-++++|.
T Consensus 102 ~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 102 WKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred chHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 4566777777654 578999999999998632 3344 79999999875544221 1 1 2 223346777887
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhh----------hccccccchHHHHHhHhC
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS----------LVTKWTPLTQKYVEEWIG 246 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~----------~~~~~~~~~~~~~~~w~~ 246 (394)
.+.||+|+|.+||.|..+ +...|.++...|+|||.+++.+...+..... ..+.|+--+...+..|+.
T Consensus 180 ~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~ 256 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLE 256 (315)
T ss_pred cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHH
Confidence 789999999999999999 8999999999999999999887644432221 123343334456777775
Q ss_pred C
Q 016157 247 P 247 (394)
Q Consensus 247 ~ 247 (394)
+
T Consensus 257 r 257 (315)
T PF08003_consen 257 R 257 (315)
T ss_pred H
Confidence 3
No 65
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.32 E-value=7.4e-12 Score=115.87 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~ 178 (394)
++......++++.+|||||||+|.++.. .+...|+|+|+++ |.. ..++.++++|+.+.+ +.++
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 4444445568899999999999997532 3456999999988 321 237899999999853 5678
Q ss_pred CccEEEehhhhhhcCChh--------HHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 179 FGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~--------~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+||+|++..+.++...+. ....+|+++.++|||||.|++.+|..+.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 999999987666543321 0256899999999999999999887643
No 66
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.32 E-value=2e-11 Score=113.78 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~- 161 (394)
+.+.+++.|++-...|+... +-+.+...+..+ +++.+||+.|||.|..+. +..|..|+|+|+|+.+++.+.+.
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~--pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQES--PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred CHHHHHHHHhcCCCCCccCC--CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHc
Confidence 45678888887666665433 233343444433 456899999999999654 36788999999999999997551
Q ss_pred ------------------CCeEEEeecCCCCCC---CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 162 ------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 162 ------------------~i~~~~~D~~~lp~~---~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+++.++|+.+++.. .+.||+|+-.+++++++... +.+..+.+.++|+|||.+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-RTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-HHHHHHHHHHHhCCCcEEEEEEE
Confidence 579999999998642 26899999999999997654 89999999999999999999987
Q ss_pred Ccc
Q 016157 221 AVE 223 (394)
Q Consensus 221 ~~~ 223 (394)
..+
T Consensus 165 ~~~ 167 (226)
T PRK13256 165 EHD 167 (226)
T ss_pred ecC
Confidence 544
No 67
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=5.7e-12 Score=111.71 Aligned_cols=76 Identities=29% Similarity=0.356 Sum_probs=69.4
Q ss_pred EEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEE
Q 016157 146 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 146 ~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~l 215 (394)
+|+|+|++|++.|+++ +++++++|+.++|+.+++||+|++..++||+++ +..+|++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 5899999999999754 378999999999999999999999999999988 889999999999999999
Q ss_pred EEEEcCccc
Q 016157 216 LITVWAVEQ 224 (394)
Q Consensus 216 li~~~~~~~ 224 (394)
++..|..+.
T Consensus 78 ~i~d~~~~~ 86 (160)
T PLN02232 78 SILDFNKSN 86 (160)
T ss_pred EEEECCCCC
Confidence 999987543
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=3.1e-12 Score=117.72 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeec-CCCC--CCCCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~-~~lp--~~~~~fD~Vi~~~ 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ ++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999998743 35677999999999999999874 578999999 6666 6678999999876
Q ss_pred hhhhcCChh-----HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~-----~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...+..... ....+|+++.++|||||.|++....
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 543222100 1367899999999999999998643
No 69
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.30 E-value=4.2e-12 Score=116.97 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=82.3
Q ss_pred ccccccccccchHHHHHHHcCCCCCC-EEEEEcCccCcccccCC--CcEEEEEeCCHHHHHHHHHc--------CCeEEE
Q 016157 99 APHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGLNP--DCFFVGCDISPSLIKICVDR--------GHEVLV 167 (394)
Q Consensus 99 a~~y~~~~~~~~~~l~~~l~~l~~g~-~VLDvGCG~G~~l~~~~--~~~v~gvD~S~~~l~~a~~~--------~i~~~~ 167 (394)
+.+|...|...-......+....++. .++|+|||+|.-+.... --+|+|+|+|+.||+.|++. +..+..
T Consensus 9 a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~ 88 (261)
T KOG3010|consen 9 AADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSS 88 (261)
T ss_pred HHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccc
Confidence 33343333333233444444444554 88999999996543222 23899999999999999987 233444
Q ss_pred eecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcC
Q 016157 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA 221 (394)
Q Consensus 168 ~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG-~lli~~~~ 221 (394)
.++..|--.+++.|+|++..++|++. ..++.+++.|+||+.| .+.+-.+.
T Consensus 89 ~~~v~L~g~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 89 DEMVDLLGGEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cccccccCCCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 44455544489999999999999997 5889999999998776 66655554
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.28 E-value=1.7e-11 Score=119.99 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHhhc-----ccccccc-------ccch------HHHHHHHcCC--CCCCEEEEEcCccCccccc--CC
Q 016157 84 PELEKKYVHRVYDAIA-----PHFSSTR-------FAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NP 141 (394)
Q Consensus 84 ~~~~~~~v~~~Yd~~a-----~~y~~~~-------~~~~------~~l~~~l~~l--~~g~~VLDvGCG~G~~l~~--~~ 141 (394)
...+++.|.++|++++ ..|+... ...| ..+..++... .++.+|||||||+|.++.. ..
T Consensus 86 ~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 86 GGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC
Confidence 3566788999998763 3344311 1222 2234444322 2578999999999997532 34
Q ss_pred CcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhcc
Q 016157 142 DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVV 209 (394)
Q Consensus 142 ~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~L 209 (394)
+..|+|+|+|+.|++.|+++ ++.+..+|+..+ +++||+|+|..+++|+++.. ...+++.+.+ +
T Consensus 166 g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~-l 240 (315)
T PLN02585 166 GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS-L 240 (315)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh-h
Confidence 67999999999999999876 135667776554 57899999999999988744 4567777775 4
Q ss_pred ccCcEEEEE
Q 016157 210 KKGSLVLIT 218 (394)
Q Consensus 210 kpGG~lli~ 218 (394)
.+||. +|.
T Consensus 241 ~~g~l-iIs 248 (315)
T PLN02585 241 AEKRL-IIS 248 (315)
T ss_pred cCCEE-EEE
Confidence 55555 443
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.28 E-value=1.3e-11 Score=118.97 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccCccc------ccCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l------~~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..+|||||||.|.+. ...++..++|+|+++.+++.|++. +++|..+|+.+++...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 5679999999998652 246888999999999999998874 4899999998865335789999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++.... +.++|+++++.|+|||.+++-.
T Consensus 203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 888885333 7999999999999999999986
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=2.7e-11 Score=111.65 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||||||+|.++.. .+...|+|+|+++.+++.|+++ +++++.+|+.+......+||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 46788999999999997531 3356999999999999998875 2678999998755456799999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+++|++ .++.+.|+|||++++..
T Consensus 150 ~~~~~~~---------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP---------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh---------HHHHHhcCcCcEEEEEE
Confidence 9887764 35778999999998865
No 73
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=2.3e-11 Score=113.34 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
..++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ .+.+..+|+ +..+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence 45678999999999997532 3456799999999999999876 357788884 3346789999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG 213 (394)
+|++++. ...+++++.+.+++++
T Consensus 138 ~~~~~~~-~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQED-AARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHH-HHHHHHHHHhhcCCeE
Confidence 9988654 6788999998775443
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.25 E-value=3.7e-11 Score=117.41 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++ ...|+.+++++|+ +.+++.++++ +++++.+|+.+.+++. +|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 3567789999999999975 3478889999998 7889888764 3789999998766643 6999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.++|++.+.. ...+|++++++|||||+++|..+..
T Consensus 223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 9999987643 5789999999999999999997644
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.24 E-value=9.9e-12 Score=113.61 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~Vi~~~ 187 (394)
...+|||||||+|.++. ..|...++|+|++..+++.|+++ ++.++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999999753 36788999999999999998765 5789999998754 4556899999876
Q ss_pred hhhhcCChh--H---HHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTES--R---RKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..... + ...+++++.++|||||.|++.+-
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 544332210 0 15789999999999999998864
No 76
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.24 E-value=9.2e-11 Score=109.84 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-CCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~ 190 (394)
..++.+|||||||+|.++.. ..+..++|+|+++.+++.|+++ .+++...|+..++ ...+.||+|++..+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45678999999999987532 3456899999999999998875 3567778877765 3457899999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+.+ +..+|+.+.++|+|||.+++..+.
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEecC
Confidence 9988 778999999999999999988764
No 77
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.24 E-value=2.5e-11 Score=110.26 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=78.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~ 178 (394)
.+.+....+++|.+|||+|||+|.++. ..+...++|+|+|+.+ ...++.++++|+.+.+ ++.+
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445567889999999999998743 1345689999999865 2247889999987643 3467
Q ss_pred CccEEEehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 179 FGDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 179 ~fD~Vi~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.||+|++... ++|+...+....+|.++.++|+|||++++..+..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 8999998643 2232222234789999999999999999987554
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.23 E-value=8e-11 Score=110.17 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=72.7
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHH----Hc-CCeEEEeecCCC----CCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICV----DR-GHEVLVADAVNL----PYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~----~~-~i~~~~~D~~~l----p~~~~~fD~Vi 184 (394)
..+.+|.+|||+|||+|.++. ..+...|+|+|+++.|++.+. ++ ++.++.+|+... ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 346789999999999999643 233568999999998887543 32 788999998752 22 35699998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+. ++++.....+|+++.++|||||+++|.+..
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 53 333222456799999999999999997543
No 79
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.22 E-value=4.8e-11 Score=107.47 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
++.+|||+|||+|.++.. ..+..++|+|+|+.+++.++++ +++++.+|+...+ .++||+|+++..+++..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 456899999999997532 2233899999999999998875 4677888887654 45899999998877665
Q ss_pred Chh------------------HHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 194 TES------------------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 194 ~~~------------------~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
... ....+|+++.++|||||++++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 321 135789999999999999999876554
No 80
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.21 E-value=3.7e-11 Score=111.76 Aligned_cols=133 Identities=22% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHcC--CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~--l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
++.+++++.|.+-...|+.... -+.+..++.. .+++.+||..|||.|..+. +..|.+|+|+|+|+.+++.+.+.
T Consensus 1 m~~~~W~~~w~~~~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 1 MDPEFWEERWQEGQTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp -HHHHHHHHHHTT--TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence 3567888888887766764433 3445555554 6777899999999998643 25688999999999999998432
Q ss_pred -------------------CCeEEEeecCCCCCCC-CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 162 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 162 -------------------~i~~~~~D~~~lp~~~-~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++++.++|+.+++... ++||+|+-..+++.++... +.+..+.+.++|+|||.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-RERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-HHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence 2578899999987543 5899999999999998654 899999999999999995555443
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=9e-11 Score=108.82 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+..+|+|+|+++.+++.|+++ +++++.+|+.......+.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 457889999999999997531 3457999999999999999876 4789999998766567899999998
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+++++ ..+.+.|||||++++..
T Consensus 153 ~~~~~~~---------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP---------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch---------HHHHHhhCCCcEEEEEE
Confidence 7765542 34667899999998875
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=1.4e-10 Score=105.25 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++. ..+..+++|+|+++.+++.|+++ +++++.+|+.. ++ .+.||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 45678899999999999742 35678999999999999999864 46788888742 33 36799999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..++ ...+++.+.+.|+|||++++.....
T Consensus 106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 106 SGGN------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred CccC------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 5443 4568899999999999998876543
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.17 E-value=1.3e-10 Score=107.94 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+...|+|+|+++.+++.|+++ +++++.+|+.........||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 357889999999999997532 3345799999999999999876 5788999998755445789999988
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....++ ...+.+.|||||++++..
T Consensus 154 ~~~~~~---------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI---------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc---------cHHHHHhcCcCcEEEEEE
Confidence 765554 345778999999999875
No 84
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.15 E-value=1.3e-10 Score=114.37 Aligned_cols=102 Identities=25% Similarity=0.304 Sum_probs=76.3
Q ss_pred CCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCCC----CC-
Q 016157 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP----YR- 176 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~lp----~~- 176 (394)
++.+|||+|||-|..+.. ..-..++|+|+|...|+.|++| ...++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999999987642 3445899999999999999876 1256777775421 23
Q ss_pred -CCCccEEEehhhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 177 -SDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 177 -~~~fD~Vi~~~vl~h-l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...||+|-|..+||+ +.+.+....+|+.+.+.|||||+|+.+++..+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 359999999999998 56667778899999999999999999987643
No 85
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=110.57 Aligned_cols=117 Identities=24% Similarity=0.343 Sum_probs=91.6
Q ss_pred ccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHc-------------CCeEEEeec
Q 016157 107 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADA 170 (394)
Q Consensus 107 ~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~ 170 (394)
...|-+-..+-...+++..+||+|||-|.-|.. ..+ ..++|+||+.-.++.|+++ ...|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 344544443444567889999999999986643 233 3899999999999999987 257888987
Q ss_pred CC------CCCCCCCccEEEehhhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 171 VN------LPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 171 ~~------lp~~~~~fD~Vi~~~vl~h-l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.. +++++.+||+|-|-+++|+ +.+.++...+|+++.+.|||||.|+-+.+..+
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 53 4455666999999999997 67777789999999999999999999987543
No 86
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.14 E-value=3e-10 Score=113.59 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.+|||+|||+|.+. ...|...|+++|+|+.+++.|+++ +++++..|+... +...+||+|+|+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999964 346788999999999999999875 246777777543 23468999999877
Q ss_pred hhhcC--ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLS--TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~--~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|... +.....++++.+.++|+|||.|++...
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 76432 222257899999999999999999863
No 87
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=5.6e-11 Score=98.85 Aligned_cols=97 Identities=27% Similarity=0.416 Sum_probs=76.3
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
|.+|||+|||+|.++. .. ...++|+|+++..++.++.+ .++++++|+.+.. +.+++||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 5689999999999753 23 58999999999999999986 3689999998875 67899999999876
Q ss_pred hhhcCCh-----hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTE-----SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~-----~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....... .....+++++.++|||||.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6533211 1146889999999999999999875
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.13 E-value=2.6e-10 Score=112.64 Aligned_cols=105 Identities=26% Similarity=0.292 Sum_probs=82.7
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..+++|.+|||+|||+|.++. ...+..++|+|+++.|++.|+.+ ++.++.+|+.++|+++++||+|++..-
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999753 24567999999999999988875 357899999999988889999999632
Q ss_pred hhh---cC---ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHH---LS---TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~h---l~---~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
... .. .......+|+++.++|||||++++.....
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 110 10 11225789999999999999999987654
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.12 E-value=3.5e-10 Score=103.61 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
.+.++.+|||+|||+|.++. . .+..+|+++|+++.+++.++++ ++.++.+|+.+. +...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46788999999999998742 2 3557999999999999988765 357788888763 33346899999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+... ... +..+++++.++|||||++++.....
T Consensus 117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 8542 222 6789999999999999999866543
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.12 E-value=1.3e-10 Score=115.95 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC--CCCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--p~~~~~fD~Vi~~~v 188 (394)
.+..+||||||+|.++. ..|+..++|+|++..+++.|.++ ++.++++|+..+ .++++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 45689999999999753 36888999999999999888765 678999998764 467899999998655
Q ss_pred hhhcCChhH---HHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESR---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..|.....| ...+|.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 443322111 1589999999999999999986
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.11 E-value=6e-10 Score=110.49 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=76.7
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
..+|||+|||+|.+.. ..+...++++|+|+.+++.|+++ + .+++.+|+... ..+.||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 4589999999998742 35778999999999999999875 3 45677777652 25789999999988863
Q ss_pred CC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 193 ST--ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 193 ~~--~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. ......+|+++.++|||||.++|..-.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 22 223688999999999999999998643
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=3.4e-10 Score=109.80 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..++.+|||+|||+|.++. ......|+|+|+++.+++.|+++ + +.+...+.. +..++.||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecC
Confidence 4578899999999998642 23334899999999999999886 2 234444422 334678999999865
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.++ ...++.++.++|||||.++++.+..++
T Consensus 235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEV------IKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHH------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 433 467899999999999999998765443
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=5.7e-10 Score=106.28 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~- 161 (394)
+++.|.+.|....-+-...-+.+..-+..++....++.+|||+|||+|.+.. ..++.+++|+|+++.|++.|+++
T Consensus 29 ~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 29 EKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred cHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 5666666665542111111123333333444444456799999999998743 23457999999999999999987
Q ss_pred -CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 016157 162 -GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 162 -~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~-----------------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++++|+.++.. ..+||+|+++-.++|+...++ ..+.+....++|+|+|.+++..
T Consensus 109 ~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 109 PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 68999999998753 568999999988888654321 2467788889999999887774
No 94
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=3.8e-10 Score=100.98 Aligned_cols=99 Identities=24% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.+. ...+...|+++|+++.+++.++++ +++++..|+.+. ...+.||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 5679999999999863 346777899999999999999876 267888898763 3378999999987655
Q ss_pred hcCC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLST--ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~--~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-.. ..-...++++..++|||||.+++..-.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4332 122688999999999999999876543
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=2.7e-10 Score=100.85 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhccccccccc--cch------HHHHHHHc------CCCCCC-EEEEEcCccCccccc--CCC--cEEE
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRF--AKW------PKVATFLN------SLPSGS-LVLDAGCGNGKYLGL--NPD--CFFV 146 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~--~~~------~~l~~~l~------~l~~g~-~VLDvGCG~G~~l~~--~~~--~~v~ 146 (394)
..++|+.+.|+.--..|..... ..| .++..++. .+...+ +|||+|||+|.++.. ..+ ...+
T Consensus 16 GtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~ 95 (227)
T KOG1271|consen 16 GTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLT 95 (227)
T ss_pred chHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcc
Confidence 3577888888886666653221 111 12222222 123333 999999999998742 222 2589
Q ss_pred EEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC-----ChhHHHHHHHHHHhccccCc
Q 016157 147 GCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS-----TESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 147 gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~-----~~~~~~~~L~ei~r~LkpGG 213 (394)
|+|.|+.+++.|+.. .|+|.+.|+....+..+.||+|+--..+..++ ...|+...+..+.+.|+|||
T Consensus 96 GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g 175 (227)
T KOG1271|consen 96 GVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG 175 (227)
T ss_pred ccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc
Confidence 999999999998764 28999999999878889999998876665542 12345778999999999999
Q ss_pred EEEEEEcCccc
Q 016157 214 LVLITVWAVEQ 224 (394)
Q Consensus 214 ~lli~~~~~~~ 224 (394)
+|+|+..+..+
T Consensus 176 ifvItSCN~T~ 186 (227)
T KOG1271|consen 176 IFVITSCNFTK 186 (227)
T ss_pred EEEEEecCccH
Confidence 99999765543
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=9.6e-10 Score=100.49 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||+|||+|.++. ..++..++|+|+++.+++.++++ +++++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 35678899999999999732 35678999999999999998875 46888888864 22222345776553
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
. ... ...+++++.++|+|||++++..+..+
T Consensus 117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 117 G----GRP---IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred C----CcC---HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2 112 57899999999999999999987643
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=99.04 E-value=1.3e-09 Score=97.97 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ + +.++.+|+.+. +.+..||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 5678999999999997432 2367999999999999998664 1 77888888763 445689999986543
Q ss_pred hhcC------------------ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLS------------------TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~------------------~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+.. .......+++++.++|||||.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 2211 11224678999999999999998876543
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=1.5e-09 Score=102.38 Aligned_cols=97 Identities=27% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV-- 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v-- 188 (394)
.+.+|||+|||+|.++. ..+...++|+|+++.+++.|+++ ++.++.+|+.+ ++.+++||+|+++-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34589999999999743 35677999999999999999875 37889999876 455789999998532
Q ss_pred ----hhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 016157 189 ----LHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 ----l~hl~~~~~-----------------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++++....+ ...+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 222222110 2467899999999999999864
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=1.1e-09 Score=86.71 Aligned_cols=92 Identities=36% Similarity=0.509 Sum_probs=75.4
Q ss_pred EEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhhcC
Q 016157 125 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~hl~ 193 (394)
+|||+|||+|.++.. .....++++|+++.++..+++. .+.++..|+.+... ..+.||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 489999999997532 3567999999999999888722 46888899888654 56789999999999884
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 222789999999999999999886
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.01 E-value=1.6e-09 Score=100.18 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||+|||+|.++.. .....++++|+++.+++.|+++ ++++..+|........+.||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 456788999999999986432 1124899999999999999875 4788899986533334789999998876
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++ .+.+.+.|+|||++++...
T Consensus 155 ~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhh---------hHHHHHhcCCCcEEEEEEc
Confidence 655 2346789999999999875
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=99.01 E-value=9.8e-10 Score=102.54 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
+.++.+|||+|||+|.++.. ....+++|+|+++.+++.++++ ++.++.+|+... ++++.||+|+++....
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 46778999999999997432 2224899999999999988775 356788888763 4567899999974322
Q ss_pred hcCC------------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~------------------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-.. ......+++++.++|||||++++..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1110 011456888999999999999987543
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.00 E-value=6.6e-10 Score=105.58 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.++.+|||+|||+|.++.. .....++|+|+|+.+++.|+++ ++. +...++..+.+||+|+++...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~- 191 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP- 191 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence 45788999999999986421 2223699999999999999876 331 11112222237999998754322
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...++.++.++|||||+++++.+..+
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 46789999999999999999876543
No 103
>PTZ00146 fibrillarin; Provisional
Probab=98.99 E-value=2.4e-09 Score=103.08 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeecCCC---CCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l---p~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++.. .+...|+++|+++. |++.++++ ++.++.+|+... ....++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 367899999999999997542 34568999999986 56766654 899999998642 223458999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... .++ +...++.++.++|||||.|+|..
T Consensus 209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVA---QPD--QARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCC---Ccc--hHHHHHHHHHHhccCCCEEEEEE
Confidence 764 122 25577789999999999999953
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.97 E-value=9.1e-10 Score=101.78 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++||.+|||||||+|+++.. .+...|+++|+.+.+++.|+++ ++.++.+|..........||.|++.+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 78999999999999997542 4556899999999999999887 67899999876444467899999998
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....++ ..+.+.||+||++++-.-
T Consensus 150 a~~~ip---------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEIP---------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred ccchHH---------HHHHHhcCCCcEEEEEEc
Confidence 776553 236677999999999764
No 105
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.93 E-value=3.9e-09 Score=102.18 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~-- 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ ++.++.+|+.+. +++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 45689999999998742 35678999999999999999876 267899998652 3456899999961
Q ss_pred ----hhhhcCC-----h-----------hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 ----VLHHLST-----E-----------SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 ----vl~hl~~-----~-----------~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+.++.. + +....+++++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111110 0 1136778999999999999998764
No 106
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=5.4e-09 Score=107.44 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=81.3
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
.+..+.+|.+|||+|||+|..+ .. ..+..|+|+|+|+.+++.++++ +++++.+|+..++ ++++||+|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~V 322 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAI 322 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEE
Confidence 3345668899999999999743 22 3456999999999999998876 3678899998875 45789999
Q ss_pred Eeh------hhhhh------cCChh-------HHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 184 ISI------AVLHH------LSTES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 184 i~~------~vl~h------l~~~~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
++- .++.. ..+.+ ....+|.++.++|||||++++.+.+...+++
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En 385 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN 385 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH
Confidence 962 12211 11111 1346899999999999999999988765543
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.92 E-value=5.5e-09 Score=101.16 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=73.5
Q ss_pred CEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh-----
Q 016157 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI----- 186 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~----- 186 (394)
.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ .++++++|+.+ ++....||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999998642 35678999999999999999886 27889999876 3444589999996
Q ss_pred --------hhhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 --------~vl~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.++.|-+. ......++.++.++|+|||.+++....
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 12233221 012567899999999999999887643
No 108
>PRK04457 spermidine synthase; Provisional
Probab=98.92 E-value=4.1e-09 Score=100.92 Aligned_cols=104 Identities=15% Similarity=0.289 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi~~ 186 (394)
.+++.+|||||||+|.++. ..++..++++|+++.+++.|++. +++++.+|+.+. .-..++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4456799999999999753 46788999999999999999975 367889998653 2224689999975
Q ss_pred hhh-hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl-~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..- ...+.......+++++.++|+|||++++..|...
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 311 1111111136899999999999999999887654
No 109
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=8.8e-09 Score=105.31 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=79.8
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~~~fD~Vi~~ 186 (394)
.+.+|.+|||+|||+|..+. ..++..|+|+|+++.+++.++++ ++.++.+|+..++ +..++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 46788999999999998642 24447999999999999999876 3578899998764 345789999953
Q ss_pred h------hhh------hcCChhH-------HHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 187 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 187 ~------vl~------hl~~~~~-------~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
. ++. +....+. ...+|..+.++|||||++++++.+....+
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 379 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEE 379 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 2 221 1111111 24789999999999999999987665443
No 110
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=5.2e-09 Score=107.04 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=84.1
Q ss_pred HHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCc
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFG 180 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~f 180 (394)
...+..+.+|.+|||+|||+|..+ .. .++..|+++|+++.+++.++++ +++++++|+..++ +..++|
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 333446778899999999999753 22 3567999999999999999876 3578889988776 446789
Q ss_pred cEEEeh------hhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 181 DAAISI------AVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 181 D~Vi~~------~vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
|.|++. +++..-++. ....++|.++.+.|||||.++.++.+...+++
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn 374 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN 374 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence 999862 222211110 01367799999999999999999988766554
No 111
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=7.4e-09 Score=106.09 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC----CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp----~~~~~fD 181 (394)
..+.+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++.+|+..++ +..++||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 356788999999999998642 2 3446999999999999988776 4678889998875 4467899
Q ss_pred EEEeh------hhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 182 AAISI------AVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 182 ~Vi~~------~vl~hl~~~------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.|++. +++++-++. + ...++|.++.++|||||+++.++.+...++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 99973 355544331 1 136889999999999999999987765443
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.90 E-value=8.7e-09 Score=103.68 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=75.5
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCC-CCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPY-RSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~-~~~~fD~Vi 184 (394)
.+..++++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+..+ ..++||+|+
T Consensus 245 aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 245 VLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred hhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEE
Confidence 33455667799999999998642 35778999999999999999886 47889999876433 245799999
Q ss_pred ehhhhh-----hcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLH-----HLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~-----hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++--.. ++... +-..++++.+.+.|+|||.+++..
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 954210 11000 113467778889999999988765
No 113
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.90 E-value=6.9e-09 Score=94.70 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCCCCE-EEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc-------CC-eEEEeecCCCCC--------CCC
Q 016157 120 LPSGSL-VLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLPY--------RSD 178 (394)
Q Consensus 120 l~~g~~-VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~lp~--------~~~ 178 (394)
+++... |||||||||.. +...|.....-.|+.+..+...... ++ .-+..|+..-+. ..+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 455554 99999999984 4558888888999998875333322 22 235667766432 245
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhhhccccccchHHHHHhHhCCCCCCccCCCcc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 258 (394)
.||+|+++.++|-.+... ...+++.+.++|+|||.|+++-+...+ ..+..-+..-++.|+....|........
T Consensus 102 ~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~GiRD~e 174 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEWGIRDIE 174 (204)
T ss_pred CcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCcCccCHH
Confidence 899999999999887655 799999999999999999999765433 2233344556778887777776666555
Q ss_pred cccccc
Q 016157 259 TLESIP 264 (394)
Q Consensus 259 ~le~i~ 264 (394)
.++.++
T Consensus 175 ~v~~lA 180 (204)
T PF06080_consen 175 DVEALA 180 (204)
T ss_pred HHHHHH
Confidence 555444
No 114
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.90 E-value=5.4e-09 Score=98.50 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
.+....+|||||+|+|.++ ...|+.+++..|+ +..++.+++. +++++.+|+. -+++. +|+++...+||+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 4556679999999999975 3589999999999 7788887776 7999999998 56655 99999999999999
Q ss_pred ChhHHHHHHHHHHhccccC--cEEEEEEcCccc
Q 016157 194 TESRRKKAIEELVRVVKKG--SLVLITVWAVEQ 224 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpG--G~lli~~~~~~~ 224 (394)
+++ ...+|+++++.|+|| |+|+|..+-.+.
T Consensus 173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHH-HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 865 899999999999999 999999875443
No 115
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.89 E-value=9.9e-09 Score=104.94 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----CCe--E--EEeecCCCCC--CCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----~i~--~--~~~D~~~lp~--~~~~fD~Vi 184 (394)
.+.+|.+|||+|||+|..+ ...+...++|+|+++.+++.++++ ++. + ..+|....+. ..++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4567899999999999753 224467999999999999998776 442 3 4556655443 467899998
Q ss_pred e------hhhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 185 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 185 ~------~~vl~hl~~~------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
+ .+++++.++. + ...++|.++.++|||||++++++.+...+++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~En 376 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEEN 376 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhC
Confidence 5 3456655431 0 1367999999999999999999988865443
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=9e-09 Score=101.15 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++++.+|||||||+|.++.. . ....|+|+|+++.+++.|+++ ++.++++|+...+.....||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 56788999999999997532 2 234799999999999998874 46788999877655557899999987
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.+++ ..+.+.|+|||++++..
T Consensus 158 g~~~ip---------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVP---------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chHHhH---------HHHHHhcCCCCEEEEEe
Confidence 666543 23567899999988865
No 117
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.88 E-value=7.1e-09 Score=94.40 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=68.2
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccccCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
...+...+...+++..|.|+|||.+.++...+ +..|.-.|+-+. +-.++.+|+.++|+.+++.|++|.+-.
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 34567777777778899999999999986544 468999998643 346899999999999999999999887
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|.... ...+|.|+.|+|||||.|.|...
T Consensus 132 LMGTn----~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 132 LMGTN----WPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp --SS-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhCCC----cHHHHHHHHheeccCcEEEEEEe
Confidence 76543 68999999999999999999964
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.88 E-value=8.4e-09 Score=98.85 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=83.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+...+..+.+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++..|+..++...+.|
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 33344466788999999999999642 2 2345899999999999988876 4678888987766555679
Q ss_pred cEEEehh------hhhhcCC------h-------hHHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 181 DAAISIA------VLHHLST------E-------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 181 D~Vi~~~------vl~hl~~------~-------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
|.|++.. ++.+-++ . .....+|..+.++|||||+++.++.+...+++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~En 207 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEEN 207 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHH
Confidence 9998632 2222111 0 01356999999999999999999877765543
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.88 E-value=1.4e-08 Score=91.01 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.+|.+++|||||+|... ...|..+++++|.++++++..+++ +++++.+++.+.-....+||.|+...
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 5678999999999999963 347889999999999999887776 68899999876422223799999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
. .. ...+|+.+...|||||++++..-..+..
T Consensus 111 g-~~------i~~ile~~~~~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 111 G-GN------IEEILEAAWERLKPGGRLVANAITLETL 141 (187)
T ss_pred C-CC------HHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence 7 22 6789999999999999999998766543
No 120
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.87 E-value=1.8e-08 Score=95.90 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCC-CC-CCCCccEEEehhh----
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-PY-RSDFGDAAISIAV---- 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l-p~-~~~~fD~Vi~~~v---- 188 (394)
+.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+. +. ..+.||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999998642 35677999999999999999876 578999998763 21 1357999998642
Q ss_pred --hhhcCChh-----------------HHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 --LHHLSTES-----------------RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 --l~hl~~~~-----------------~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..++... -...+++.+.++|||||++++..-
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22221110 134778888899999999998764
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=8.5e-09 Score=100.91 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=72.2
Q ss_pred CEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh----
Q 016157 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---- 187 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~---- 187 (394)
.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+. ++.++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999743 35678999999999999999876 267899998652 3356899999862
Q ss_pred --hh-------hhcCC---------hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 --vl-------~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ +|-+. .+-...+++++.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111 01135788999999999999998754
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=8.6e-09 Score=99.35 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----CCe----EEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----GHE----VLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~i~----~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
...+|.+|||+|||+|.++- ..-| ..++|+|+.+-+++.|+++ ++. ....+....+ ..+.||+|+++-
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI 237 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI 237 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh
Confidence 34588999999999999743 2333 4799999999999999887 444 2222222222 236999999986
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|-.+ ...+...+.++|||||+++++-.-.++.
T Consensus 238 -LA~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~ 269 (300)
T COG2264 238 -LAEV-----LVELAPDIKRLLKPGGRLILSGILEDQA 269 (300)
T ss_pred -hHHH-----HHHHHHHHHHHcCCCceEEEEeehHhHH
Confidence 3333 5788999999999999999998765553
No 123
>PHA03412 putative methyltransferase; Provisional
Probab=98.84 E-value=2.5e-08 Score=93.12 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhcccccc--cc-ccchHHHHHHHcCCCCCCEEEEEcCccCccccc-------CCCcEEEEEeCCHHH
Q 016157 85 ELEKKYVHRVYDAIAPHFSS--TR-FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSL 154 (394)
Q Consensus 85 ~~~~~~v~~~Yd~~a~~y~~--~~-~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~-------~~~~~v~gvD~S~~~ 154 (394)
..+++.+.+-|..-+-.-.. .. +.+..-...+......+.+|||+|||+|.++.. .+...|+|+|+++.+
T Consensus 9 ~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~A 88 (241)
T PHA03412 9 YEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTY 88 (241)
T ss_pred HHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHH
Confidence 45667777766653221111 11 122222122222223467999999999997531 245699999999999
Q ss_pred HHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh---------hHHHHHHHHHHhccccCcE
Q 016157 155 IKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE---------SRRKKAIEELVRVVKKGSL 214 (394)
Q Consensus 155 l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~---------~~~~~~L~ei~r~LkpGG~ 214 (394)
++.|+++ ++.++.+|+...++ +++||+||++--..-+... .-...++..+.++++||+.
T Consensus 89 l~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 89 YKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred HHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999987 58899999987665 5689999997544322111 1145688899997777764
No 124
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=1.9e-08 Score=96.42 Aligned_cols=99 Identities=27% Similarity=0.325 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ ++.++.+|+... +..++||+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 3466799999999998642 35678999999999999999875 478889998653 33578999998521
Q ss_pred ------hhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 ------LHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 ------l~hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++.+... +....+++++.++|+|||.+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1111111 113678889999999999999854
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.5e-09 Score=94.29 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||||||+|+.+.. .-..+|+.+|+.+.+.+.|+++ ++.++++|...---....||.|+..+..
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 468899999999999997543 1122999999999999999986 6889999987743345889999999988
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+|. .+.+.|||||++++-+-
T Consensus 149 ~~vP~---------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVPE---------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCH---------HHHHhcccCCEEEEEEc
Confidence 77754 34677999999999875
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3.2e-08 Score=94.98 Aligned_cols=120 Identities=22% Similarity=0.239 Sum_probs=83.2
Q ss_pred ccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEE
Q 016157 99 APHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR----G---HEVLV 167 (394)
Q Consensus 99 a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~ 167 (394)
...|+..+...-.+++.--.....+.+|||+|||.|.+ +...|...++-+|++..+++.|+++ + ..++.
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~ 214 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWA 214 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE
Confidence 34455444433333322222223445999999999986 3457888999999999999999987 2 24566
Q ss_pred eecCCCCCCCCCccEEEehhhhhhcCChh--HHHHHHHHHHhccccCcEEEEEEc
Q 016157 168 ADAVNLPYRSDFGDAAISIAVLHHLSTES--RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 168 ~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~--~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.|..+ +..+ +||+|+|+--||-=.... -..+++.+..+.|++||.|.|..-
T Consensus 215 s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 215 SNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 66555 3333 999999998887432211 134899999999999999999875
No 127
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.81 E-value=3.2e-08 Score=95.62 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=80.9
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcc-------c-cc----CCCcEEEEEeCCHHHHHHHHHc----------------
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKY-------L-GL----NPDCFFVGCDISPSLIKICVDR---------------- 161 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~-------l-~~----~~~~~v~gvD~S~~~l~~a~~~---------------- 161 (394)
|..+...+......-+|+..||+||.- + .. ...+.|+|+|+|..+++.|++-
T Consensus 103 f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ 182 (287)
T PRK10611 103 FPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQ 182 (287)
T ss_pred HHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHH
Confidence 444444332222236999999999972 1 11 1246899999999999999853
Q ss_pred ----------------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 ----------------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 ----------------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+.+.+++ .+.||+|+|.+++.|+..+. +.++++.+.+.|+|||.|++-
T Consensus 183 ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 183 RYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEe
Confidence 246777787775543 57899999999999997755 799999999999999988775
No 128
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=2.5e-08 Score=93.82 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCccCccc---c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l---~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
..+...+|||+|||+|... . ..+.+.++|+|+.+.|.+.|++. .++++++|+.++. ....+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3444779999999999852 2 23458999999999999999987 5899999998865 3345799999
Q ss_pred ehhhhhhcCCh---------------hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTE---------------SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~---------------~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+--..-.... -..+.+++...++|||||.+.+...
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 96433222111 0168899999999999999999864
No 129
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.78 E-value=1.4e-08 Score=92.93 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCEEEEEcCccCcc--c------c---c--CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 123 GSLVLDAGCGNGKY--L------G---L--NPDCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l------~---~--~~~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
.-+|+.+||++|.- . . . .....++|+|+|+.+++.|++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 36899999999982 1 1 1 1247999999999999999862
Q ss_pred -------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 -------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+.+.+...+.||+|+|-+||-++..+. ..++++.+++.|+|||.|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEe
Confidence 47899999998444568899999999999998765 799999999999999999986
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.78 E-value=1.6e-08 Score=98.13 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
...+|.+|||+|||+|.++- ..-| ..|+|+|+++.+++.|+++ + ..+......+ .....||+|+++-..
T Consensus 158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILA 235 (295)
T ss_dssp HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-H
T ss_pred hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCH
Confidence 35678899999999999742 2233 3899999999999999987 2 2333322222 335899999997654
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+- ...++..+.++|+|||+++++-.-.++.
T Consensus 236 ~v------L~~l~~~~~~~l~~~G~lIlSGIl~~~~ 265 (295)
T PF06325_consen 236 DV------LLELAPDIASLLKPGGYLILSGILEEQE 265 (295)
T ss_dssp HH------HHHHHHHCHHHEEEEEEEEEEEEEGGGH
T ss_pred HH------HHHHHHHHHHhhCCCCEEEEccccHHHH
Confidence 42 4678888999999999999998766554
No 131
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.77 E-value=5.3e-08 Score=90.82 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=77.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
..+...+...+....|.|+|||.+.++. .....|+..|+-+ -+-+++.+|+.++|+.+++.|+++.+-.|.
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM 239 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFCLSLM 239 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeec--------CCCceeeccccCCcCccCcccEEEeeHhhh
Confidence 3455666666667789999999999875 2334788888743 245789999999999999999999887765
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.- + ...++.|+.|+|||||.++|....
T Consensus 240 gt-n---~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 240 GT-N---LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cc-c---HHHHHHHHHHHhccCceEEEEehh
Confidence 43 2 789999999999999999999643
No 132
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.77 E-value=2.5e-08 Score=93.74 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCEEEEEcCccCccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
..++||||.|.|..+.. .+-. +|++++.|+.|....+++|++++..| ++.-.+.+||+|.|.++|..-.. |..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~--~w~~~~~~fDvIscLNvLDRc~~---P~~ 169 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDID--DWQQTDFKFDVISCLNVLDRCDR---PLT 169 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehh--hhhccCCceEEEeehhhhhccCC---HHH
Confidence 46899999999998654 2322 79999999999999999998876443 34434568999999999998877 899
Q ss_pred HHHHHHhccccCcEEEEEEc
Q 016157 201 AIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 201 ~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+.|++.|+|+|++++.+-
T Consensus 170 LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEE
Confidence 99999999999999999873
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=4.9e-08 Score=100.37 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
.+.++.+|||+|||+|..+. . .+...++|+|+++.+++.++++ +++++.+|+..++ +. ++||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45678899999999998642 2 3567999999999999998875 3688899998764 32 7899999
Q ss_pred ehhh------hhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAV------LHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~v------l~hl~~------~~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+..- +.+-++ .. ....+|..+.++|||||+++.++.+...
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 7431 221111 01 1246899999999999999987765533
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=2.4e-08 Score=89.09 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.++.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ +++++.+|+.++++++..||.|+++--.+ +
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~-~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN-I 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-c
Confidence 45678999999999998542 2356899999999999999876 58899999999988777799999875443 3
Q ss_pred CChhHHHHHHHHHHhc--cccCcEEEEE
Q 016157 193 STESRRKKAIEELVRV--VKKGSLVLIT 218 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~--LkpGG~lli~ 218 (394)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~-----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S-----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H-----HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333332 4477777665
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.69 E-value=5.8e-08 Score=101.25 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~-- 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ .+.++.+|+... +..++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCC
Confidence 34689999999998642 35778999999999999999876 367888887642 3356899999942
Q ss_pred ------------hhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 ------------VLHHLST---------ESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 ------------vl~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++.|-+. -+....+++++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111110 0123567888999999999998864
No 136
>PRK00811 spermidine synthase; Provisional
Probab=98.68 E-value=5.7e-08 Score=94.05 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCccCccccc---C-CCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCC-CCCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~-~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-p~~~~~fD~V 183 (394)
+...+||+||||+|..+.. . ...+|+++|+++.+++.|++. +++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3456999999999987542 3 335899999999999999874 357888998763 2346789999
Q ss_pred EehhhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~-~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++...-.+.+... ....+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9965433222110 12678999999999999988764
No 137
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.68 E-value=5.6e-08 Score=88.99 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=71.7
Q ss_pred EEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CC--CCCCCccEEEehhhhh
Q 016157 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH 190 (394)
Q Consensus 125 ~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp--~~~~~fD~Vi~~~vl~ 190 (394)
.+||||||.|.++. ..|+..++|+|+....+..+.++ |+.++++|+.. ++ ++++++|.|...+---
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999853 48999999999999988887765 78999999987 32 5578999999876554
Q ss_pred hcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|...... -..+|..++++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4432210 3689999999999999999886
No 138
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.66 E-value=6.3e-07 Score=87.93 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHcCCCCCCEEEEEcCccCcc----cc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeE--EEeecCC----C
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKY----LG----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVN----L 173 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~----l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~--~~~D~~~----l 173 (394)
.+...++++..|+|+|||+|.= +. ......++++|+|..+|+.+.++ .+++ +.+|+.+ +
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence 4445677888999999999983 22 23457899999999999888765 2444 7777755 2
Q ss_pred CC--CCCCccEEEeh-hhhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 016157 174 PY--RSDFGDAAISI-AVLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW 220 (394)
Q Consensus 174 p~--~~~~fD~Vi~~-~vl~hl~~~~~~~~~L~ei~r-~LkpGG~lli~~~ 220 (394)
+- ......+++.. ..|.++...+ ...+|+++.+ .|+|||.|+|.+-
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEecC
Confidence 21 12335666655 4899998766 7899999999 9999999999763
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.64 E-value=7e-08 Score=90.89 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcc----ccc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C---
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~----l~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p--- 174 (394)
.+..++....+..+|||+|||+|.- +.. .+..+++++|+++.+++.|+++ .++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 3455555566678999999999983 222 4467999999999999999876 368899998763 2
Q ss_pred --CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 175 --~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...++||+|++-..- .....++..+.++|||||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 114689999986431 124678999999999999988864
No 140
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.62 E-value=1.2e-08 Score=103.33 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=76.4
Q ss_pred CEEEEEcCccCcccccCCCcEEEEE-----eCCHHHHHHHHHcCCeEEEeec--CCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGNGKYLGLNPDCFFVGC-----DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~~~~~~v~gv-----D~S~~~l~~a~~~~i~~~~~D~--~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
..+||||||+|.|..+.....|+.+ |..+..++.|.++|+..+.+-+ ..|||++++||+|.|..++..+....
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 4689999999999775333333333 4455688999999988776664 57999999999999998877665432
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..+|-++-|+|||||+++.+.+...
T Consensus 199 --g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 --GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cceeehhhhhhccCceEEecCCccc
Confidence 4689999999999999999876544
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.4e-07 Score=86.79 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
..+.||++|||.|.|+|.++. ..+..+|+..|+-+..++.|+++ .+.+..+|+.+.-+.+ .||+|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 467899999999999999753 25778999999999999999987 3778889988866544 899998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
.- +++ +.++|..+.++|||||.++++.+..+|-...
T Consensus 169 LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt 204 (256)
T COG2519 169 LD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKT 204 (256)
T ss_pred Ec-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence 73 555 8999999999999999999999998886543
No 142
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=4.7e-08 Score=89.64 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred CCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc---C--CeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
...++|||||-|...+. ..++ +++-+|.|..|++.|+.. + ...+.+|-+.|+|.++++|+|+++..+|++.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 45789999999998654 2233 789999999999999876 2 45688999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+...+..+...|||+|.|+-+.++.+
T Consensus 153 ---LPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 153 ---LPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred ---CchHHHHHHHhcCCCccchhHHhccc
Confidence 78899999999999999998877654
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=2.1e-07 Score=92.11 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCC-CCCCCCCcc
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD 181 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-lp~~~~~fD 181 (394)
+...+||+||||+|..++ ..+..+|+++|+++.+++.|++. +++++.+|+.+ +....+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 334599999999998643 23446999999999999999961 56788899876 334457899
Q ss_pred EEEehhhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~--hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++...-. .......-..+++.+.+.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999974211 10111113678999999999999988764
No 144
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.54 E-value=2.3e-07 Score=93.78 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=73.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCC--C--CCCCc
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSDFG 180 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp--~--~~~~f 180 (394)
+..+.+|.+|||+|||+|.+.- ...+ ..|+++|+|+.+++.|+++ + ++++++|+.+.. + ..++|
T Consensus 215 ~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 215 TRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred HHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 3344568899999999999742 2333 4899999999999999876 2 468899987642 1 24689
Q ss_pred cEEEehhhhhhcCCh-------hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~-------~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++.---. ..+. .....++..+.++|+|||.++.+..+
T Consensus 295 DlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 295 DVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999863210 1110 01345566788999999999987644
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.52 E-value=2.1e-07 Score=100.73 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=74.4
Q ss_pred HHHcCCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC-CCCCCcc
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFGD 181 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp-~~~~~fD 181 (394)
.++..+..|.+|||+|||+|.+.-. ..+. .|+++|+|+.+++.|+++ .++++++|+.+.. -..++||
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 4444555688999999999997432 2344 799999999999999886 2578999986532 1146899
Q ss_pred EEEehhh-----------hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAV-----------LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~v-----------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++.-- ..... ....++..+.++|+|||.+++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~---~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQR---DHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHH---HHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998521 11111 14678888999999999998875
No 146
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=4.1e-07 Score=89.03 Aligned_cols=109 Identities=27% Similarity=0.326 Sum_probs=84.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEe-ecCCCCCCCCCcc
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGD 181 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~-D~~~lp~~~~~fD 181 (394)
++..-++.+.+|..|||-=||||.++- ..-|+.++|+|++..|++-|+.+ + ..+... |+..+|++++++|
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence 344455678899999999999999864 36788999999999999999887 2 344555 9999999988999
Q ss_pred EEEehhh------hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAV------LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~v------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.|++--- +.-..-.+...++|+.+.++||+||++++..+
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9988221 11111123368899999999999999999876
No 147
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=2.7e-07 Score=96.71 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccCcccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCCC-CCCCCCcc
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD 181 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-p~~~~~fD 181 (394)
++..+|||||||+|..+. ..+. .+++++|+++++++.|+++ +++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 455799999999998753 2344 6999999999999999982 467888998763 23357899
Q ss_pred EEEehhhhhhcCChh--HHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTES--RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~--~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++.......+... -..++++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999975432221100 02468999999999999999875
No 148
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.49 E-value=3.1e-07 Score=84.42 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc------C-CeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR------G-HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~------~-i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
..+.||.|+|-|+.+. +.+-+ .|-.+|+.+..++.|++. + .++.+..+.++....++||+|.+-+++-|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 3589999999999764 23333 899999999999999954 1 356777777765556799999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.+ ..++|+++...|+|+|.+++-.
T Consensus 136 TD~d-lv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 TDED-LVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -HHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhCcCCcEEEEEe
Confidence 9866 8999999999999999998864
No 149
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.49 E-value=4.7e-07 Score=85.64 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=81.0
Q ss_pred HHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCC---C
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR---S 177 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~---~ 177 (394)
......+.||++|||.|.|+|.++. ..+...|+..|+.+...+.|++. ++++.+.|+..-.|. +
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 3344568999999999999999743 36888999999999999999987 478999999754442 3
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCccchhh
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~L-kpGG~lli~~~~~~~~~~ 227 (394)
..+|.|+.- +++ +..+|..+.++| ||||+++++.++.+|...
T Consensus 112 ~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 112 SDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp TSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred CcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 679999873 556 788999999999 999999999999998643
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.47 E-value=4.5e-07 Score=87.18 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi~~ 186 (394)
..+||+||||+|..+. ..+...++++|+++.+++.|++. +++++.+|... +....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 3599999999998653 23345899999999999999874 35666777654 22225789999986
Q ss_pred hhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~-~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.....-+... -..++++.+.+.|+|||.+++..
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 5422111100 03688999999999999999873
No 151
>PLN02366 spermidine synthase
Probab=98.44 E-value=5.9e-07 Score=87.89 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCccCccccc---CCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC--CCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp--~~~~~fD~V 183 (394)
+...+||+||||.|..++. .++ ..|+.+|+++.+++.|++. +++++.+|+...- .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999997532 344 5899999999999999884 4788899975421 225689999
Q ss_pred EehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++-..-.+.+.. ---..+++.+.++|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986543322211 013578999999999999987653
No 152
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.44 E-value=2e-07 Score=92.76 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=92.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCcc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD 181 (394)
+..+...+.++..++|+|||-|.... ......++|+|.++..+..+... ...++.+|+...|+.++.||
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd 180 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD 180 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence 34455567888899999999998754 36778999999999877766544 34568899999999999999
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.+-++.+..|.++ ...+++|+.|+++|||++++..|...
T Consensus 181 ~v~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 181 GVRFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred cEEEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999999 88999999999999999999988653
No 153
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.2e-07 Score=83.28 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=77.0
Q ss_pred cCCCCCCEEEEEcCccCccccc------CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP 174 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~------~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~lp 174 (394)
.++.||.+.||+|.|+|++... .++...+|||.-+++++.++++ .+.++.+|....-
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 3578999999999999997532 4566679999999999999876 3578899998877
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.....||.|.+.+. .....+++...|+|||++++-.-
T Consensus 158 ~e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEeec
Confidence 67789999999864 34566778888999999999864
No 154
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.41 E-value=1.7e-06 Score=71.75 Aligned_cols=95 Identities=34% Similarity=0.597 Sum_probs=73.1
Q ss_pred EEEEcCccCc--ccc-cCCC-cEEEEEeCCHHHHHHHHHcC-------CeEEEeecCC--CCCCC-CCccEEEehhhhhh
Q 016157 126 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH 191 (394)
Q Consensus 126 VLDvGCG~G~--~l~-~~~~-~~v~gvD~S~~~l~~a~~~~-------i~~~~~D~~~--lp~~~-~~fD~Vi~~~vl~h 191 (394)
+||+|||+|. ++. .... ..++|+|+++.++..++... +.+..+|... +++.. ..||++ +.....+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 9999999997 333 2232 58999999999998866553 5788888876 77766 489999 5554444
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
... ....+.++.+.|+|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 433 578999999999999999999876543
No 155
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.41 E-value=7e-07 Score=85.36 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCcc--c------ccC-----CCcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 123 GSLVLDAGCGNGKY--L------GLN-----PDCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l------~~~-----~~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
.-+|+-+||+||.- . ... ..+.|+|+|++..+|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 46899999999982 1 112 357999999999999999842
Q ss_pred --------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 --------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+..-++..+.||+|+|-.||-++..+. ..+++..++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEc
Confidence 36777888877664567899999999999998766 689999999999999999986
No 156
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=8.2e-07 Score=82.29 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeE-----------------------
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEV----------------------- 165 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~----------------------- 165 (394)
...-.+..+|||||-+|.+.. ......|+|+||.+.+++.|++. ..+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 334456789999999999753 23344799999999999999986 0000
Q ss_pred ---------------------EEeecCCCCCCCCCccEEEehhhhh--hcCC-hhHHHHHHHHHHhccccCcEEEEE
Q 016157 166 ---------------------LVADAVNLPYRSDFGDAAISIAVLH--HLST-ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 166 ---------------------~~~D~~~lp~~~~~fD~Vi~~~vl~--hl~~-~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
...|+. .+....||+|+|..+-- |+.. ++-+.++++.+.++|.|||+|++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 011111 23456899999865433 3332 233889999999999999999885
No 157
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.37 E-value=4.9e-07 Score=88.09 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCccCcccc--cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+-.+..|||||||+|.+.- +.. ...|+|+|.|.-+ +.|++- -++++++.++++.++....|+|++-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 35678999999999999742 233 3489999988654 555543 26889999988766678999999977
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
.=+.+.-+.....+|-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 66665544446777777778999999876
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=82.12 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=75.0
Q ss_pred CEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEEEehhhh
Q 016157 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (394)
Q Consensus 124 ~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl 189 (394)
..+||||||.|.++ ...|...++|||+....+..|.++ |+.++..|+..+- +++++.|-|..++--
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999975 358999999999999887776655 5678888887632 445699999987765
Q ss_pred hhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTES--R---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-|..... | -..+|+.+.++|||||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4443321 1 2679999999999999999987
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.33 E-value=1.3e-06 Score=85.83 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~h 191 (394)
++.+|||+|||+|.++. ..++..|+|+|+++.+++.|+++ +++++++|+.++.. ..+.||+|++.---..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 45799999999999753 24557999999999999999876 47899999987542 2357999998732111
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+.++...++|++.++++.
T Consensus 253 ------~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 253 ------IGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred ------ccHHHHHHHHHcCCCeEEEEEC
Confidence 1222333344467887777765
No 160
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.32 E-value=2.4e-06 Score=87.87 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC----CCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++.. .....|+|+|+|+.|++.|+++ +++++.+|+.+ +++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45778999999999997432 2346899999999999999875 47899999865 23445789999985
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
---. . ....++.+.+ ++|++.++++.
T Consensus 375 PPr~-----g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRA-----G-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCc-----C-hHHHHHHHHh-cCCCeEEEEEe
Confidence 3211 1 2345555555 68999888885
No 161
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.6e-06 Score=82.31 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=66.7
Q ss_pred EEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeecCCCCCCCCCccEEEehhh-----
Q 016157 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAV----- 188 (394)
Q Consensus 125 ~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~lp~~~~~fD~Vi~~~v----- 188 (394)
+|||+|||+|..+ ...+...|+|+|+|+.+++.|+++ + +.++++|...- . .++||+|+++--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 7999999999964 236667999999999999999887 4 34555554442 2 348999999531
Q ss_pred hhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+.... +-..+++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 1111110 114678889999999999988875
No 162
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.30 E-value=1.8e-06 Score=79.18 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=75.4
Q ss_pred CEEEEEcCccCcc-cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC---CCCccEEEehhhhhhcCChhHHH
Q 016157 124 SLVLDAGCGNGKY-LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 124 ~~VLDvGCG~G~~-l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~---~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
.++|||||=+... .....-.+|+.||+++. .-.+.+.|+.+.|.+ ++.||+|.++-||.+++++..+-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 5899999986554 33345568999999872 345789999998764 67999999999999999999999
Q ss_pred HHHHHHHhccccCcE-----EEEEEcC
Q 016157 200 KAIEELVRVVKKGSL-----VLITVWA 221 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~-----lli~~~~ 221 (394)
+.++.+.+.|+|+|. |++..+.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999999 8887754
No 163
>PLN02476 O-methyltransferase
Probab=98.29 E-value=2.3e-06 Score=82.31 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=77.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C-
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 175 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~- 175 (394)
.+..++.......+|||||+|+|..+ .. .++..++++|.+++.++.|++. .++++.+|+.+. + +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 34555555666789999999999853 22 3466899999999999999876 478899998662 2 1
Q ss_pred ---CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ---~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++||+|+.-+- ......+++.+.++|+|||.+++..
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 1368999998653 2225788999999999999999874
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.28 E-value=3.8e-06 Score=77.16 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCccCcccc--c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p~~~~~fD~Vi~~~vl 189 (394)
.++.+|||+|||+|.+.- . .....|+++|+++.+++.++++ +++++.+|+.+. +.....||+|++.--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356799999999998752 2 2235899999999999988876 367889998763 2224579999997653
Q ss_pred hhcCChhHHHHHHHHHHh--ccccCcEEEEEEcC
Q 016157 190 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r--~LkpGG~lli~~~~ 221 (394)
.. . ....+++.+.. +|+|+|.+++....
T Consensus 132 ~~--g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK--G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC--C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21 1 13445555554 37999988888654
No 165
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.28 E-value=2.5e-06 Score=79.06 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccc----ccCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEE-eecCCCC--C
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNLP--Y 175 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~-~D~~~lp--~ 175 (394)
.+..++..+....+|||||.+.|+-+ ...+ ..+++.+|+++++.+.|++. .++++. +|..+.- .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 34555556667789999999999842 3334 67999999999999999987 256666 4765532 3
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..++||+|+.-+. ...-..++..+.++|+|||.+++......
T Consensus 129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 4689999998653 22257899999999999999999875443
No 166
>PRK04148 hypothetical protein; Provisional
Probab=98.26 E-value=6.9e-06 Score=70.36 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCEEEEEcCccCc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhH
Q 016157 122 SGSLVLDAGCGNGK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 122 ~g~~VLDvGCG~G~-~l~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
.+.++||||||+|. .+. ...+.+|+|+|+++..++.+++.++.++.+|+.+.++. -..+|+|.++-. .++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~e- 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRD- 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHH-
Confidence 35789999999996 432 24578999999999999999999999999999986643 366899998753 222
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
....+.++++. -|.-++|...+.+.
T Consensus 90 l~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 90 LQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 55666666664 45667777766654
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.25 E-value=4.2e-06 Score=73.59 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCC-----CCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp-----~~~~~fD~Vi~~~ 187 (394)
...|.-|||+|.|||.+.++ .+...+++++.|+.......++ +..++.+|+.++. +.+..||.|+|.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 45677999999999998653 4556899999999999998887 7889999998875 5567899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
-+-.++... +.+.|+.+...|.+||.++-..++.
T Consensus 126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 888888755 7899999999999999999988873
No 168
>PLN02672 methionine S-methyltransferase
Probab=98.22 E-value=3.1e-06 Score=94.31 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------CCeEEEeecCCCCC
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY 175 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------------------~i~~~~~D~~~lp~ 175 (394)
+.+|||+|||+|.+.. ..+...++|+|+|+.+++.|+++ +++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999642 35667999999999999998654 26789999876432
Q ss_pred C-CCCccEEEehhh------hhhcCCh-----------------------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 R-SDFGDAAISIAV------LHHLSTE-----------------------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ~-~~~fD~Vi~~~v------l~hl~~~-----------------------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...||+|+++-- +..+... .-..+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999999532 1111100 012677888999999999988876
Q ss_pred c
Q 016157 220 W 220 (394)
Q Consensus 220 ~ 220 (394)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 4
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.21 E-value=1.4e-06 Score=80.38 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=86.4
Q ss_pred ccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCC
Q 016157 107 FAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVN 172 (394)
Q Consensus 107 ~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~ 172 (394)
..+|.....-+... +.|.+|||.+.|-|+.+. ...|+ .|+-++-++..++.|.-+ +++++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 35565555444443 458999999999999753 46676 999999999999988765 57999999987
Q ss_pred C--CCCCCCccEEEehhh-hh---hcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 173 L--PYRSDFGDAAISIAV-LH---HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 173 l--p~~~~~fD~Vi~~~v-l~---hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+ .|++++||+||---- +. ++- -.++-++++|+|||||+++-++-+..+
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLY----seefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELY----SEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHh----HHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 4 378999999986211 11 232 478899999999999999999866543
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4.1e-06 Score=75.21 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhh---
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV--- 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~v--- 188 (394)
-.|..|+|+|||||.+.- +..-..|+|+|+.++++++++++ +++|+.+|+.+. ...||.++++--
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 357789999999999742 23446899999999999999987 489999999987 466888888643
Q ss_pred -hhhcCChhHHHHHHHHHHhcc
Q 016157 189 -LHHLSTESRRKKAIEELVRVV 209 (394)
Q Consensus 189 -l~hl~~~~~~~~~L~ei~r~L 209 (394)
..| .+ ..+|..+.++-
T Consensus 121 ~~rh-aD----r~Fl~~Ale~s 137 (198)
T COG2263 121 QRRH-AD----RPFLLKALEIS 137 (198)
T ss_pred cccc-CC----HHHHHHHHHhh
Confidence 344 33 34555555543
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.20 E-value=3.9e-06 Score=77.45 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=73.8
Q ss_pred HHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-----C
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-----Y 175 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-----~ 175 (394)
.++.......+||||||++|+-+ .. .++.+++.+|+++...+.|++. .++++.+|+.+. + .
T Consensus 38 ~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 38 QMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT
T ss_pred HHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc
Confidence 33333334569999999999842 22 3568999999999999999875 478999998762 2 1
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+.||+|+.-+-- ..-...+..+.++|+|||.+++..-
T Consensus 118 ~~~~fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 118 EEGQFDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TTTSEEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CCCceeEEEEcccc------cchhhHHHHHhhhccCCeEEEEccc
Confidence 13589999987632 2256788899999999999999853
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=8.5e-06 Score=76.34 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHcCCe---EEEeecCCCCC-----CCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHE---VLVADAVNLPY-----RSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~~i~---~~~~D~~~lp~-----~~~~fD~Vi~~~vl 189 (394)
.++..|||+|||||.++.. ..+ ..|+|+|+++.|+....+.+.. +...|+..+.. .-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 4678999999999998542 233 4899999999888763333222 33445553321 113567666543
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...|..+.++|+| |.+++.+
T Consensus 152 ---------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 ---------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------HhHHHHHHHHhCc-CeEEEEc
Confidence 3357889999999 7776665
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.14 E-value=4e-06 Score=80.04 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++.+|+..++++ .||.|+++--.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 45788999999999997542 2356899999999999999875 588999999998764 48999987654
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.13 E-value=2.8e-06 Score=81.83 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++++|+..+++.+-.+|.|+++--
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 45778999999999997542 2234899999999999999875 688999999998865422578877643
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.10 E-value=3e-05 Score=74.12 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCCEEEEEcCccCcccc----cCCC--cEEEEEeCCHHHHHHHHHc-------CC-eEEEeecCCCC---CCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP---YRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~--~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~lp---~~~~~fD~Vi 184 (394)
..-+||||.||.|.|+- ..+. ..+.-.|.|+..++..++. ++ +|.++|+.+.. --+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 44699999999999842 2333 5899999999999887764 34 89999988732 1134569999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.++.++.+++.+.....|+-+.+++.|||.++.+.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999999998877889999999999999988875
No 176
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.09 E-value=2.6e-05 Score=74.12 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc-----------------------------------C
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G 162 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~-----------------------------------~ 162 (394)
..|.++||||||+-.+-. +.+.+ +|+..|.++.-++..++. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 356799999999977632 23333 799999988776644431 1
Q ss_pred C-eEEEeecCCCC-CCC-----CCccEEEehhhhhhcC-ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 163 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 163 i-~~~~~D~~~lp-~~~-----~~fD~Vi~~~vl~hl~-~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ .++.+|+...+ +.. ..||+|++..+++... +.+.-.++++++.++|||||.|++....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 2 47889998754 222 3599999999999876 4456789999999999999999998764
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.09 E-value=4.3e-06 Score=87.31 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=74.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
.+..+||||||.|.++. ..|...++|+|+....+..+.++ |+.++..|+..+. ++++++|.|+.++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 35689999999999753 48999999999999877665544 5667777765332 66788999998776
Q ss_pred hhhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTES--R---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
--|..... | -..+|+.++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 54433211 1 2678999999999999999886
No 178
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.08 E-value=7.4e-06 Score=83.92 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC----CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----p~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++.. .....|+|+|+++.+++.|+++ +++++.+|+.+. ++.+++||+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 45678999999999997532 2235899999999999999875 578999998652 2335679999974
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-.=..+ ...+++.+.+ ++|++.++++
T Consensus 370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRKGC-----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCC-----CHHHHHHHHh-cCCCEEEEEc
Confidence 321111 2455665554 8898877765
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.08 E-value=6.3e-06 Score=84.59 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCEEEEEcCccCcccc----c----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..|||||||+|.+.. + ....+|++++-|+.++...+++ .++++.+|++++..+ ..+|+||+=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999742 1 2346999999999877655332 589999999998764 489999984
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
..= .+.+.|...+.|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 23333446778999999999999876
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.06 E-value=1.2e-05 Score=72.59 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=67.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCCc---------EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCC
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY 175 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~~---------~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~ 175 (394)
+....++..|||--||+|.++- ..... .++|+|+++.+++.|+++ .+.+.+.|+.++++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 3456788999999999999752 12222 399999999999999887 25789999999997
Q ss_pred CCCCccEEEehhhhhh-cCC----hhHHHHHHHHHHhccccCcEEEEE
Q 016157 176 RSDFGDAAISIAVLHH-LST----ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~h-l~~----~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.++++|+|+++--.-. +.. ..--..+++++.++|++ ..++++
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 7889999999643221 111 11135678999999999 444443
No 181
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.05 E-value=9.8e-06 Score=72.74 Aligned_cols=98 Identities=21% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCccCccc---c-cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCC-C--C-CCCCCcc
Q 016157 120 LPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVN-L--P-YRSDFGD 181 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l---~-~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~-l--p-~~~~~fD 181 (394)
...+.+|||+|||+|... . ......|+.+|..+ .++.++.+ .+.+...|-.+ . . .....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999741 2 23567999999998 77766654 23444444322 1 1 2346899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|++..+++.-.. ...+++-+.++|+|+|.+++....
T Consensus 122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999986443 788999999999999997777643
No 182
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.03 E-value=1.1e-05 Score=81.09 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~h 191 (394)
++.+|||+|||+|.+.. ..++..|+|+|+++.+++.|+++ +++++.+|+.+... ....||+|++.---..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 45799999999998732 24557899999999999999876 46899999876431 1246999988643221
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ...+++.+. .++|++.++++.
T Consensus 313 ~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 I-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 1 234555554 479999888875
No 183
>PLN02823 spermine synthase
Probab=98.02 E-value=1.9e-05 Score=78.18 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEEe
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 185 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi~ 185 (394)
...+||.||+|.|..++ ..+..+++.+|+++.+++.|++. +++++.+|+... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 34689999999998654 23445899999999999999975 367888888763 334578999998
Q ss_pred hhh-------hhhcCChhHHHHHHH-HHHhccccCcEEEEEE
Q 016157 186 IAV-------LHHLSTESRRKKAIE-ELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~v-------l~hl~~~~~~~~~L~-ei~r~LkpGG~lli~~ 219 (394)
-.. ..++-+ .++++ .+.+.|+|||.+++..
T Consensus 183 D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEec
Confidence 632 122222 46787 8999999999987753
No 184
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=5.6e-06 Score=71.09 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=57.4
Q ss_pred CCCEEEEEcCccCcccc--cCC-CcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~-~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.|..++|+|||.|.+.- ..+ ...|+|+|+.+.+++++.++ +++++++|+.++.+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 57899999999999752 233 34799999999999999987 6789999999998888999999997654
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=1.7e-05 Score=75.29 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=74.9
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C--
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-- 175 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~-- 175 (394)
+..++.......+|||||+++|.-+ . ..++.+++.+|+++...+.|++. .++++.+|+.+. + +
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 3444444444569999999999842 2 24577999999999999999876 478999998763 2 1
Q ss_pred ---CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ---~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++||+|+.-+- ...-...+..+.++|+|||.+++..
T Consensus 150 ~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred ccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1368999998654 2225678888899999999988864
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.97 E-value=4.2e-05 Score=69.38 Aligned_cols=92 Identities=24% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCCC-EEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGS-LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~-~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++... +++|||+|.|.- +-..|..+++.+|....-+...+ .. |++++.+.+++ +.....||+|++-+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 44444 899999999973 23478899999999987544433 33 68899999998 44578999999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+- + ...++.-+...|++||++++.-
T Consensus 124 v~----~---l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 VA----P---LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SS----S---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hc----C---HHHHHHHHHHhcCCCCEEEEEc
Confidence 63 3 6788999999999999998874
No 187
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=4.8e-05 Score=71.94 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-----CCCCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-----LPYRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-----lp~~~~~fD~Vi 184 (394)
.+..|||+|||+|..+ ...+.+.++++|.|+.++..|.++ ++.++..+++. .+...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 3458999999999863 346788999999999999999887 35555443332 335568999999
Q ss_pred ehhhh------hhcCChh-----------------HHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVL------HHLSTES-----------------RRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl------~hl~~~~-----------------~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++--. ..+..+. -...++.-+.|.|+|||.+.+..-..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 96421 1111000 13556777889999999999987533
No 188
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=4.4e-05 Score=69.91 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHc---CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICV 159 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~ 159 (394)
.++..+.|...|.. ..-|-+.+.++.++.. -+.++..|+|+|+.+|.+++. .++..|+|+|+-+--.
T Consensus 9 ~~~~~D~Y~~~Ak~-~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---- 83 (205)
T COG0293 9 AEHLRDPYYKKAKK-EGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---- 83 (205)
T ss_pred HHhhcCHHHHHHhh-ccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----
Confidence 34444555554432 1122333444444443 467899999999999998653 4556799999965321
Q ss_pred HcCCeEEEeecCCCC--------CCCCCccEEEehh--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 160 DRGHEVLVADAVNLP--------YRSDFGDAAISIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 160 ~~~i~~~~~D~~~lp--------~~~~~fD~Vi~~~--------vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
-.++.++++|+..-+ +....+|+|++-. ..+|......-..++.-+..+|+|||.+++-+|..+
T Consensus 84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 126999999998743 3345579999733 234443333345667777889999999999998765
Q ss_pred ch
Q 016157 224 QE 225 (394)
Q Consensus 224 ~~ 225 (394)
..
T Consensus 164 ~~ 165 (205)
T COG0293 164 DF 165 (205)
T ss_pred CH
Confidence 43
No 189
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.94 E-value=2.2e-05 Score=79.78 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=90.3
Q ss_pred cccchHHHHHHH-cCCCCCC-EEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcC------CeEEEeecCCCC
Q 016157 106 RFAKWPKVATFL-NSLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG------HEVLVADAVNLP 174 (394)
Q Consensus 106 ~~~~~~~l~~~l-~~l~~g~-~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~------i~~~~~D~~~lp 174 (394)
++..|..+...+ ..+.+-. ++|-+|||+-.+... .....|+-+|+|+-.++.+..++ ..+...|+..+.
T Consensus 30 wY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~ 109 (482)
T KOG2352|consen 30 WYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV 109 (482)
T ss_pred HHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc
Confidence 444554444433 3345555 999999999987542 33348999999999998887763 678999999999
Q ss_pred CCCCCccEEEehhhhhhcCChh-------HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 YRSDFGDAAISIAVLHHLSTES-------RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~-------~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|++++||+|+..+.++++-..+ ++...+.+++|+|+|||+++..+..
T Consensus 110 fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 110 FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 9999999999999999976543 2456789999999999998888763
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.93 E-value=2.3e-05 Score=74.52 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCcc---EEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD---~Vi~~~vl 189 (394)
+.++.+|||||||+|.++.. .....++++|+++.+++.++++ +++++.+|+..+++. .|| +|+++-..
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 45678999999999998642 2234699999999999999875 578999999998864 466 66665432
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+. ...+..+.. .+|+..++...
T Consensus 105 -~i~-----~~il~~ll~--~~~~~~~~~~~ 127 (253)
T TIGR00755 105 -NIS-----SPLIFKLLE--KPKFRLAVLMV 127 (253)
T ss_pred -hhH-----HHHHHHHhc--cCCCceEEEEe
Confidence 232 334444443 55555444443
No 191
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.93 E-value=3e-05 Score=74.19 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=86.1
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHcCCCC-------CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH
Q 016157 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~-------g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~ 160 (394)
-+.+++..++......|...+..+...|..+-| ..+||--|||-|+++- +..|..+.|.|.|--|+-...-
T Consensus 17 ~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 17 TLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 344455555555555666666666665554322 4699999999999853 3458899999999988643221
Q ss_pred -------c----------------------------------------CCeEEEeecCCCCCCC---CCccEEEehhhhh
Q 016157 161 -------R----------------------------------------GHEVLVADAVNLPYRS---DFGDAAISIAVLH 190 (394)
Q Consensus 161 -------~----------------------------------------~i~~~~~D~~~lp~~~---~~fD~Vi~~~vl~ 190 (394)
. ++....+|+.++-..+ ++||+|+..+.|.
T Consensus 97 iLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID 176 (270)
T PF07942_consen 97 ILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID 176 (270)
T ss_pred HHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence 0 2345666776654444 7999999997776
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
-..+ ....|+.|.++|||||..+
T Consensus 177 TA~N---i~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 177 TAEN---IIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred chHH---HHHHHHHHHHHhccCCEEE
Confidence 5555 8999999999999999544
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.89 E-value=2e-05 Score=76.67 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++.+|+...++ ..||.|+++--
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence 456788999999999998542 3345899999999999998864 47899999988765 36898887644
No 193
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.88 E-value=6.8e-05 Score=77.44 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~fD~Vi~ 185 (394)
...+|.+|||+++|+|.=+ .. .....+++.|+++.-++..+++ ++.+...|...++ ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 5578999999999999732 22 3445899999999988887765 3466777877653 23467999994
Q ss_pred ----hh--hhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 186 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 186 ----~~--vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
++ ++..-++. ....++|..+.+.|||||+++-++.+...+++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 32 22221110 113788999999999999999998877655443
No 194
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.80 E-value=4.4e-05 Score=76.78 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=80.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCC----CC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP----YR 176 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp----~~ 176 (394)
....+...-.|.+|||+=|=||.+.- +..|+ +|++||+|...++.|+++ + +.++++|+..+- -.
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence 34445554459999999999999853 35666 999999999999999987 2 579999987642 23
Q ss_pred CCCccEEEehh-hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 177 SDFGDAAISIA-VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 177 ~~~fD~Vi~~~-vl~h-----l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+||+|++-- .+-- +.-......++..+.++|+|||.+++++-..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 45999999821 0000 1111125778899999999999999997543
No 195
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.77 E-value=6.4e-05 Score=73.62 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=72.7
Q ss_pred CEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
...+|+|.|.|..++. .| .+-|+++....+-.++.. +++.+.+|+..- .|. -|+|++-+++||+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDED 253 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCChHH
Confidence 6899999999997642 34 366777777766555444 588888888764 333 36999999999999866
Q ss_pred HHHHHHHHHHhccccCcEEEEEEc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++|+++...|+|||.+++...
T Consensus 254 -cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 -CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHhCCCCCEEEEEec
Confidence 89999999999999999999875
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.77 E-value=1.5e-05 Score=71.71 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC------C--CC--CCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------P--YR--SDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------p--~~--~~~fD~Vi~~ 186 (394)
.+.++||+||++|.++.. . +...|+|+|+.+..- -.++.++++|+.+. . +. ...||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 348999999999998642 2 457999999987610 03455556665431 1 11 2689999997
Q ss_pred hhhhhc--------CChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 187 AVLHHL--------STESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 187 ~vl~hl--------~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.....- .........|.-+...|+|||.+++-++....
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 722211 11112455666677889999999999887433
No 197
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.74 E-value=0.0001 Score=72.09 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEcCccCccccc-----------CCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCC--
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYR-- 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----------~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~-- 176 (394)
...++.+|||.+||+|.++.. .....++|+|+++.++..|+-+ ...+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 456677899999999998632 2567999999999999888754 235788888765543
Q ss_pred CCCccEEEehhhhhhc--CC----------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 177 SDFGDAAISIAVLHHL--ST----------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl--~~----------------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...||+|+++--+--. .. ...-..++..+.+.||+||++.+.++.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4789999996433222 00 011235889999999999999888753
No 198
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.71 E-value=0.00022 Score=65.92 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~ 185 (394)
.+.+|++||-+|.++|..... .+...|+|+++|+ .++..|++| |+--+..|+.... .--+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 467899999999999997543 6688999999999 567888888 7777889987632 11358899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-- ..+.+..-++.++...||+||.+++..-
T Consensus 150 DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DV-----AQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E------SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC-----CChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 53 3344577889999999999999999874
No 199
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.70 E-value=6.1e-05 Score=69.17 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=63.6
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
+.....+|..|||+-||-|.|+- ..+...|+++|+++.+++.+++. .+..+.+|+..++. ...||-|
T Consensus 95 i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 95 IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 34456789999999999999842 24677899999999999888775 36789999998765 7899999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
++... .. ...+|..+.+++|+||.+-
T Consensus 174 im~lp-----~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLP-----ES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--T-----SS--GGGGHHHHHHHEEEEEEEE
T ss_pred EECCh-----HH--HHHHHHHHHHHhcCCcEEE
Confidence 98542 11 3468888999999998764
No 200
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=7e-05 Score=67.09 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=71.0
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCC--------CCCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l--------p~~~~~fD~V 183 (394)
.-+.|+.+|||+||.+|.++. ..|...|.|+|+-. +.--.|..++++ |+.+. .+++...|+|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 346789999999999999864 26888999999732 222236677776 66552 1356788999
Q ss_pred Eehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 184 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 184 i~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
++-.. ..|...-+.-..+|.-....++|+|.+++-+|...+..
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~ 191 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEA 191 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchH
Confidence 98432 22222111123455556677899999999999876643
No 201
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.67 E-value=0.00012 Score=73.83 Aligned_cols=89 Identities=21% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.+|||++||+|.+.- ..+...|+++|+++.+++.++++ ++.+..+|+..+....+.||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 4689999999999742 12334899999999999999876 245888888664221467999998642
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.. +..+|..+.+.+++||.++++
T Consensus 135 -Gs---~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS---PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence 22 467888878889999999999
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.66 E-value=0.00015 Score=69.93 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=66.9
Q ss_pred CEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHc--CCeE-----EEeecC--CCCCCCCCccEEEehhhh
Q 016157 124 SLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR--GHEV-----LVADAV--NLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~--~i~~-----~~~D~~--~lp~~~~~fD~Vi~~~vl 189 (394)
.+|||+|||+|.-+-. . .-..++++|.|+.|++.++.- +..- ...+.. ..++ ...|+|++.++|
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehhh
Confidence 4899999999985321 2 234899999999999988765 1100 011111 1122 234999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
..+++ +.+..+++.+.+.+.+ .|+|...+...
T Consensus 113 ~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NELPS-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 99999 5589999999888876 77777765443
No 203
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.63 E-value=0.00011 Score=72.31 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc---C------CeEEE-eecCCCC----CCCCCccEE
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~-~D~~~lp----~~~~~fD~V 183 (394)
++.++||||||+|... ...++..++|+|+++.+++.|++. + +++.. .|...+. ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999998642 235678999999999999999876 2 33432 3333221 235789999
Q ss_pred Eehhhhhh
Q 016157 184 ISIAVLHH 191 (394)
Q Consensus 184 i~~~vl~h 191 (394)
+|+--++-
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99876553
No 204
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.62 E-value=0.00012 Score=70.95 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccCccc--ccCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYL--GLNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l--~~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.|..|||||||+|.+. ....| .+|++++.| +|.+.|++. .|.++.+-++++.++ +..|+||+--.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 4678999999999863 33444 489999976 688888875 478899999988774 5789999854433
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-+-+ +|..+.--.+.+.|||.|.++=++
T Consensus 255 mL~N-ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVN-ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhh-HHHHHHHHHHHhhcCCCCcccCcc
Confidence 3433 444455555679999999876543
No 205
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.60 E-value=0.00031 Score=63.99 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C-CC-CCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RS-DFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~-~~-~~fD~Vi~~ 186 (394)
+|.++||++||+|.+.- ...+. .|+++|.++.+++.++++ +++++.+|+... . + .. ..||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999998732 23343 899999999999988876 257888998542 2 1 12 247888874
Q ss_pred hhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~ 221 (394)
--... .. ...++..+. .+|+++|.+++....
T Consensus 129 PPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN-GA---LQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 43321 11 234444443 468899987776543
No 206
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00039 Score=62.17 Aligned_cols=100 Identities=14% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHH----c--CCeEEEeecCCCCCCCCCccEEEehhhh--
Q 016157 123 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVD----R--GHEVLVADAVNLPYRSDFGDAAISIAVL-- 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~----~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl-- 189 (394)
...+||||||+|.... ..++..+.++|+++.+++.-.+ + +++.++.|+..-- ..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 4589999999998532 3678899999999998877443 3 4678888887632 33778887764221
Q ss_pred --------h-----hcC-ChhH--HHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 --------H-----HLS-TESR--RKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 --------~-----hl~-~~~~--~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +.. ...+ ..+++..+-.+|.|.|.+++.....+
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 1 110 0011 46777778888999999999876543
No 207
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00029 Score=68.09 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=73.3
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC-CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp-~~~~~fD 181 (394)
.+..| .+||-||-|.|..++ ..+-.+++.+|+.+..++.|++. .++++.+|....- -...+||
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 34445 599999999999865 34556899999999999999987 3567788876642 2234899
Q ss_pred EEEehhhhh-----hcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 182 AAISIAVLH-----HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 182 ~Vi~~~vl~-----hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+||+-..-. .+- -..+++.+.++|+++|.++..
T Consensus 152 vIi~D~tdp~gp~~~Lf----t~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALF----TEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccC----CHHHHHHHHHhcCCCcEEEEe
Confidence 999855432 111 278999999999999999988
No 208
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.52 E-value=7.9e-05 Score=68.76 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCc-EEEEEeCCHHHHHHHHHc----------------CCeEEEeecCCCCCCC-
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS- 177 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~lp~~~- 177 (394)
.+.++...+|||||.|..+- ...++ ..+||++.+...+.|... .+++..+|+.+.++..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 35678899999999999632 23344 599999999988777542 2467788887654221
Q ss_pred --CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 178 --DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 178 --~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
...|+|+++... + +++ ....|.++..-||+|-+++
T Consensus 119 ~~s~AdvVf~Nn~~--F-~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 119 IWSDADVVFVNNTC--F-DPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp HGHC-SEEEE--TT--T--HH-HHHHHHHHHTTS-TT-EEE
T ss_pred hhcCCCEEEEeccc--c-CHH-HHHHHHHHHhcCCCCCEEE
Confidence 346999998764 2 222 6778888889999987754
No 209
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0013 Score=65.89 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=81.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcc----ccc--CCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeecCCCC---CC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKY----LGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLP---YR 176 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~----l~~--~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~lp---~~ 176 (394)
+...+....||.+|||+.++.|.= +.+ ..+..|+++|+++.-++..+++ | +.++..|...++ ..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 444556778999999999999972 233 3356789999999877776665 3 457788876654 22
Q ss_pred CCCccEEEe------hhhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 177 SDFGDAAIS------IAVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 177 ~~~fD~Vi~------~~vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
.+.||.|+. .++++-=++. ....++|..+.++|||||.|+.++-+...+++.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 235999987 3344221110 014688999999999999999999887766544
No 210
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0001 Score=64.15 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=60.8
Q ss_pred EEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHH
Q 016157 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~e 204 (394)
-.+-||||.=.+ .|+...+-+.-.+ -+.++.--....+|.+++.|+|.+-+|++|+.-.+ -..++++
T Consensus 5 ~kv~ig~G~~r~---npgWi~~d~ed~~---------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alke 71 (185)
T COG4627 5 EKVKIGAGGKRV---NPGWIITDVEDRP---------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALKE 71 (185)
T ss_pred eEEEEecccccc---CCCceeeehhccc---------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 357789987433 4555433222111 12222222234578899999999999999998766 7899999
Q ss_pred HHhccccCcEEEEEEcCcc
Q 016157 205 LVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 205 i~r~LkpGG~lli~~~~~~ 223 (394)
++|.|||||.|-|.++...
T Consensus 72 chr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 72 CHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred HHHHhCcCcEEEEEcCCcc
Confidence 9999999999999997654
No 211
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.42 E-value=7e-05 Score=68.08 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCEEEEEcCccCccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
..++||+|.|.|..... .|.. +|++.++|..|....++++..++-. .+..-.+-.||+|.|..++.--.+ +-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~---p~k 187 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTE--IEWLQTDVKLDLILCLNLLDRCFD---PFK 187 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeee--hhhhhcCceeehHHHHHHHHhhcC---hHH
Confidence 36899999999998765 3443 7999999999999999987655432 122222346999999999887666 789
Q ss_pred HHHHHHhcccc-CcEEEEEE
Q 016157 201 AIEELVRVVKK-GSLVLITV 219 (394)
Q Consensus 201 ~L~ei~r~Lkp-GG~lli~~ 219 (394)
.|+.|+.+|+| .|++++..
T Consensus 188 LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 99999999999 89888774
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.34 E-value=0.00063 Score=64.56 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC-CCCC-CccEEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSD-FGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp-~~~~-~fD~Vi 184 (394)
...+||=||-|.|..++ ..+...++.+|+++.+++.|++. +++++.+|+...- -..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 45799999999998653 23346899999999999999875 4688999986532 2234 899999
Q ss_pred ehhhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl-----~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.-..- .++- -..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~----t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLF----TREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGS----SHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCccccc----CHHHHHHHHhhcCCCcEEEEEc
Confidence 84332 1122 2689999999999999999886
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.34 E-value=0.00034 Score=66.27 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++++..|||||.|||.++.. ..+..|+++++.+.|+....++ .++++++|+...+++ .||.+|++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 467889999999999998653 6778999999999999998887 378999999987653 589999853
No 214
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.34 E-value=0.00021 Score=69.10 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC-C--CCCCCccEEEe
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--YRSDFGDAAIS 185 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-p--~~~~~fD~Vi~ 185 (394)
..|.+|||+=|=||.+.- ...|+ .|+.+|.|..+++.|+++ .++++.+|+... . -..++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457899999999999753 24454 899999999999999987 357899998762 2 13468999998
Q ss_pred hhh-hh--hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAV-LH--HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~v-l~--hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
--- +. .+.-......++..+.++|+|||.++++.-+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 210 00 00001124678899999999999998876543
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.33 E-value=0.0002 Score=71.55 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC----------C------C
Q 016157 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR----------S------D 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~----------~------~ 178 (394)
.+|||+|||+|.+... .....|+|+|+++.+++.|+++ +++++.+|+.++.-. . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4799999999987432 1124899999999999999886 467899998763210 1 1
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+.---=.-+ ...+++.+. +|++.++++.
T Consensus 279 ~~d~v~lDPPR~G~-----~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 279 NCSTIFVDPPRAGL-----DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred CCCEEEECCCCCCC-----cHHHHHHHH---cCCcEEEEEc
Confidence 37988874220000 234445444 4788888775
No 216
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00057 Score=65.00 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCC-CccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~-~fD~Vi~~~ 187 (394)
+.++..|||||+|.|.++.. ..+..|+++++.+.++...+++ +++++.+|+...+++.- .++.|+++-
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 45588999999999998753 4566899999999999998887 58999999999887643 567787754
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0015 Score=64.51 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=82.1
Q ss_pred HHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------C-CeEEEeecCCCCCCCCCccEE
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~lp~~~~~fD~V 183 (394)
..+....+|.+|||+=+|-|.|+-. .....|+++|+++.+++..+++ + +..+++|+...+...+.||-|
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI 260 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence 3444556799999999999998532 2223499999999999998876 3 678999999987655889999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
++...- + ...++..+.+.+++||.+.++.+..+..
T Consensus 261 im~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 261 IMGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EeCCCC----c---chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 987542 2 4678888999999999999998876553
No 218
>PRK00536 speE spermidine synthase; Provisional
Probab=97.20 E-value=0.0014 Score=62.63 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+...+||=||.|.|..++. .+. +|+-+|+.+.+++.|++. +++++. .+.+ ...++||+||+-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 3347999999999997652 333 999999999999999984 344443 1111 123689999986
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. . ...+.+.+.+.|+|||.++...
T Consensus 147 s~----~----~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----P----DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----C----ChHHHHHHHHhcCCCcEEEECC
Confidence 42 2 3578899999999999999864
No 219
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.17 E-value=0.00041 Score=69.60 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=59.2
Q ss_pred CEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-C-CC--------------CC
Q 016157 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------SD 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p-~~--------------~~ 178 (394)
.+|||++||+|.+... .....|+|+|+++.+++.|+++ +++++.+|+.+. + +. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 5799999999987432 2224899999999999999876 467899998662 1 10 12
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+.---=.-+ ...+++.+.+ |++.++++.
T Consensus 288 ~~D~v~lDPPR~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 288 NFSTIFVDPPRAGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCEEEECCCCCCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 58999874321111 2344455543 778777775
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0028 Score=58.72 Aligned_cols=91 Identities=22% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCEEEEEcCccCcc---cc-cCCCcEEEEEeCCHHHH---HHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLI---KICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG~G~~---l~-~~~~~~v~gvD~S~~~l---~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.+++|||+|.|.- +. ..|...++-+|....-+ +.+.+. |++++++-+++..-....||+|++-++-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 57999999999973 22 47888899999987644 444433 6889999999876322229999998763
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+ ....+.-+..++|+||.++..-+
T Consensus 146 --~---L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 146 --S---LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred --c---hHHHHHHHHHhcccCCcchhhhH
Confidence 2 66778888899999999876654
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.16 E-value=0.0021 Score=69.97 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=53.5
Q ss_pred EEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCC--CCCccEEEehhhhh-hcCChhHHHHH---HHHHHhcc
Q 016157 144 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLH-HLSTESRRKKA---IEELVRVV 209 (394)
Q Consensus 144 ~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~--~~~fD~Vi~~~vl~-hl~~~~~~~~~---L~ei~r~L 209 (394)
.++|+|+++.+++.|+++ + +.+.++|+.+++.+ .++||+|+++--.- -+.+......+ |.+..+..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 699999999999999987 3 57889999887644 35799999984322 22222222333 44444444
Q ss_pred ccCcEEEEEEcC
Q 016157 210 KKGSLVLITVWA 221 (394)
Q Consensus 210 kpGG~lli~~~~ 221 (394)
.+|+.+++.+..
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 599998887643
No 222
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.16 E-value=0.0013 Score=62.83 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=66.1
Q ss_pred CEEEEEcCccCcc--c-----ccCCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeecCCCC-----------CCCC
Q 016157 124 SLVLDAGCGNGKY--L-----GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP-----------YRSD 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~--l-----~~~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~lp-----------~~~~ 178 (394)
...||||||-=.- . ...|..+|+-+|..+-.+..++.. + ..++++|+.+.. +.-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5899999994321 1 137899999999999998887765 3 578999998632 1112
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..=.++++.+|||+++.+.+..+++.+...|.||..|.|+....+
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 334788899999999977799999999999999999999987654
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.15 E-value=0.00057 Score=66.46 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc----cC-CCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC--CCC--
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRS-- 177 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~-~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp--~~~-- 177 (394)
++...+. +.++..+||.+||.|..+. .. +...|+|+|.++.+++.|+++ ++.++++|+.++. ...
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 3444443 3577899999999999743 33 367999999999999999875 5788888887754 111
Q ss_pred CCccEEEehh
Q 016157 178 DFGDAAISIA 187 (394)
Q Consensus 178 ~~fD~Vi~~~ 187 (394)
.++|.|++..
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 2688888754
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.02 E-value=0.0013 Score=64.83 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=65.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHH-HHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI-CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~-a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
+.+|.++|||||++|.++.. ..+..|+|||.++ |-.. ....++.....|........+.+|+++|-.+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 56899999999999998653 5577999999654 3332 223368888888766543367899999976632
Q ss_pred HHHHHHHHHHhccccC--cEEEEEE
Q 016157 197 RRKKAIEELVRVVKKG--SLVLITV 219 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpG--G~lli~~ 219 (394)
+.++.+-|.+.|..| ..+++..
T Consensus 282 -P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 282 -PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -HHHHHHHHHHHHhcCcccEEEEEE
Confidence 677888888888766 3444443
No 225
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.97 E-value=0.0044 Score=57.86 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~ 185 (394)
+++||++||-+|.++|..... .|..-|++++.|. .++..|+++ |+--+.-|+.... ..-...|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 578999999999999997543 6778999999987 477888887 7766777877632 11246677776
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
- ++.+++...+.-++.-.||+||.|+|+.-+
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 3 344444455566778889999999999754
No 226
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.0051 Score=57.11 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CC-----CCCCCc
Q 016157 120 LPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP-----YRSDFG 180 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp-----~~~~~f 180 (394)
+-..+++||||.=||+-+ ....+..|+++|+++...+++.+. .++++++++.+ |+ ...++|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 334569999999898843 235678999999999988887654 47889998765 21 346899
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|+++.-+ ..+ .-.....++.++||+||.+++..
T Consensus 151 DfaFvDa----dK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 151 DFAFVDA----DKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eEEEEcc----chH--HHHHHHHHHHhhcccccEEEEec
Confidence 9998743 222 24578899999999999999875
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.95 E-value=0.0022 Score=67.43 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCEEEEEcCccCccccc----C------C--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-----CCCC
Q 016157 123 GSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRSD 178 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~----~------~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-----~~~~ 178 (394)
..+|||.|||+|.++.. . . ...++|+|+++.++..|+.+ ++.+...|..... -..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999998531 1 1 25799999999999988765 2345555543211 1125
Q ss_pred CccEEEehh
Q 016157 179 FGDAAISIA 187 (394)
Q Consensus 179 ~fD~Vi~~~ 187 (394)
.||+|+.+-
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999964
No 228
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.87 E-value=0.00052 Score=62.23 Aligned_cols=99 Identities=21% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCccCccc-c-cCCCc-EEEEEeCCHHHHHHHHHc----C----CeEEEeecCC-CC---CCCCCccEEEe
Q 016157 121 PSGSLVLDAGCGNGKYL-G-LNPDC-FFVGCDISPSLIKICVDR----G----HEVLVADAVN-LP---YRSDFGDAAIS 185 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l-~-~~~~~-~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~-lp---~~~~~fD~Vi~ 185 (394)
-+|.++||+-||+|.+. . ..+|+ .|+.+|.++..++..+++ + +.++.+|+.. ++ .....||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36889999999999873 2 34554 899999999999998877 2 5778888643 22 24688999998
Q ss_pred hhhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~~ 222 (394)
---...-.. ...++..+. .+|+++|.+++-....
T Consensus 121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 543221100 256777776 7899999998886443
No 229
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0054 Score=55.91 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~~~ 187 (394)
+.+|++||-+|..+|..... .+...++|+++|+. ++..|+++ |+--+..|+.... .--+..|+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 56899999999999997543 44678999999996 56677777 6766788887532 123568888763
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+.+..-+..++...||+||.+++..-+
T Consensus 153 ----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 153 ----VAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred ----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 445555788899999999999998888643
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.75 E-value=0.0031 Score=63.45 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCEEEEEcCccCccc-c---cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhh
Q 016157 123 GSLVLDAGCGNGKYL-G---LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l-~---~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl 189 (394)
+-+|||+.||+|... + ..++ ..|+++|+++.+++.++++ +++++.+|+..+-. ....||+|..-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999963 2 2224 4899999999999998876 25788888876432 235799998854 2
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. +..++..+.+.+++||.++++.
T Consensus 124 ---Gs---~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT---PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence 22 4579999999999999999983
No 231
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.75 E-value=0.0017 Score=58.38 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=71.4
Q ss_pred CEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 124 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..+.|+|.|+|.+.- ....-+|++++..+...+.|.++ +++++.+|+.+..| +..|+|+|-..-..+-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 589999999999753 22334899999999999999887 67999999999888 55799998655444444
Q ss_pred hhHHHHHHHHHHhccccCcEEEE
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli 217 (394)
++ ...++..+...||-.|.++=
T Consensus 112 E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cc-ccHHHHHHHHHhhcCCcccc
Confidence 33 56788888889998888753
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.73 E-value=0.0078 Score=57.92 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=60.0
Q ss_pred CEEEEEcCccCcccc------cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 124 SLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~------~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+|+=||||+=-++. ..++..++++|+++.+++.+++- ++.|+.+|..+.+..-..||+|+..+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 599999999866532 25677899999999999988653 578999999887654568999998775
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
..--.. ...++|..+.+.++||.++++-
T Consensus 202 Vg~~~e--~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAE--PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccc--hHHHHHHHHHhhCCCCcEEEEe
Confidence 542221 2689999999999999988876
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.61 E-value=0.0044 Score=60.04 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=78.6
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCcc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGD 181 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD 181 (394)
.+....+|..|||+++|+|.=+ .. .....+++.|++..-+...+++ ++.....|..... .....||
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc
Confidence 3345678899999999999732 22 3367999999999887776654 3455666776652 2234699
Q ss_pred EEEe------hhhhhhcCChh-------------HHHHHHHHHHhcc----ccCcEEEEEEcCccchhhh
Q 016157 182 AAIS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 182 ~Vi~------~~vl~hl~~~~-------------~~~~~L~ei~r~L----kpGG~lli~~~~~~~~~~~ 228 (394)
.|+. .+++..-++.. ...+.|+.+.+.+ ||||+++.++-+...+++.
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE 228 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENE 228 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHH
Confidence 9987 23333322211 1367899999999 9999999999877665543
No 234
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.60 E-value=0.005 Score=53.20 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCccCcccc---c-----CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccE
Q 016157 121 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~-----~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
.+...|+|+|||.|++.. . .++..|+|+|.++.+++.+.++ .+.+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 566799999999999642 3 4788999999999998888776 23344444433221 445577
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++..+.---+. ..+|+...+ |+-.+++.++.-
T Consensus 103 ~vgLHaCG~Ls-----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS-----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH-----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77654433332 455665555 666666666543
No 235
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.016 Score=55.06 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCC--CCCc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--SDFG 180 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~--~~~f 180 (394)
.+..+.||++|||-|.|+|.+.- ..|..+++-.|+-....+.|++. ++++.+-|+...-|. +..+
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 33467899999999999999742 36778999999988777777654 578999999876553 5678
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcCccchh
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWAVEQED 226 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG-~lli~~~~~~~~~ 226 (394)
|+|+.- ++. +..++-.+..+||.+| +|+...+..||-.
T Consensus 179 DaVFLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvq 217 (314)
T KOG2915|consen 179 DAVFLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQ 217 (314)
T ss_pred ceEEEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence 888763 455 7888899999999877 6666667777754
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.44 E-value=0.016 Score=56.64 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----CCC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----YRS 177 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~~~ 177 (394)
+...+. +.+|..++|.=+|.|..+. ..+...|+|+|.++.+++.++++ .+.++++++.+++ ...
T Consensus 12 vl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 12 VVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 344443 4577899999999998643 33458999999999999999875 4677777776543 122
Q ss_pred CCccEEEe
Q 016157 178 DFGDAAIS 185 (394)
Q Consensus 178 ~~fD~Vi~ 185 (394)
.++|.|+.
T Consensus 91 ~~vDgIl~ 98 (305)
T TIGR00006 91 TKIDGILV 98 (305)
T ss_pred CcccEEEE
Confidence 45777755
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.44 E-value=0.011 Score=54.54 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCccCcc---cccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC-C-CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~---l~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-l-p~~~~~fD~Vi~~~vl 189 (394)
..|++||.||-|-|.. ++..+-..=+-|+..+..++..+.. ++-...+--++ + .++++.||-|.--..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5688999999999985 3344555667789999999998876 34444432222 1 1557889999876554
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|-.+ ...+.+.+.|+|||+|++-...
T Consensus 180 e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 55544 7888899999999999987664
No 238
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.42 E-value=0.02 Score=54.06 Aligned_cols=101 Identities=23% Similarity=0.368 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
..+++..+|+|||||.=-++ ...++..++|+||+..+++..... ..++...|+..-+. ....|+.+..=
T Consensus 101 ~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK 179 (251)
T PF07091_consen 101 GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK 179 (251)
T ss_dssp CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET
T ss_pred hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH
Confidence 34566789999999987653 346678999999999999887765 45778888877543 56789999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++-+.... +...++ +...++-. .++++.+..
T Consensus 180 ~lp~le~q~-~g~g~~-ll~~~~~~-~~vVSfPtr 211 (251)
T PF07091_consen 180 TLPCLERQR-RGAGLE-LLDALRSP-HVVVSFPTR 211 (251)
T ss_dssp -HHHHHHHS-TTHHHH-HHHHSCES-EEEEEEES-
T ss_pred HHHHHHHHh-cchHHH-HHHHhCCC-eEEEecccc
Confidence 888775432 233333 33333322 666666543
No 239
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.38 E-value=0.0053 Score=63.02 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=70.2
Q ss_pred CEEEEEcCccCcccccCCCcEEEEEe----CCHHHHHHHHHcCCe-EEEeecCCCCCCCCCccEEEehhhhhhcCChhHH
Q 016157 124 SLVLDAGCGNGKYLGLNPDCFFVGCD----ISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~~~~~~v~gvD----~S~~~l~~a~~~~i~-~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~ 198 (394)
..|+|...|.|.|+.+.....|+.+. ..+..+...-+||+- ..+.=.+.++.-+.+||++.+..++.+..+.-..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~ 446 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM 446 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence 57999999999997653332222222 344556666677643 2333345566667999999999999988776558
Q ss_pred HHHHHHHHhccccCcEEEEEE
Q 016157 199 KKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 199 ~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+|-||-|+|||||.++|-.
T Consensus 447 ~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 447 EDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHhHhhcCCCceEEEec
Confidence 899999999999999999974
No 240
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.26 E-value=0.017 Score=49.95 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=55.3
Q ss_pred EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEEehhhhhhcCC--------hhHHHHHHHHH
Q 016157 144 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL 205 (394)
Q Consensus 144 ~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi~~~vl~hl~~--------~~~~~~~L~ei 205 (394)
+|+|+|+-+.+++..+++ +++++..+-.++. .+.+.+|+++.+.. ++|. ++--..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999887 3778888777765 22347898887543 3332 23367899999
Q ss_pred HhccccCcEEEEEEcCccch
Q 016157 206 VRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 206 ~r~LkpGG~lli~~~~~~~~ 225 (394)
.++|+|||++.+..+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHEEEEEEEEEEE--STCH
T ss_pred HHhhccCCEEEEEEeCCCCC
Confidence 99999999999999876543
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.027 Score=56.32 Aligned_cols=103 Identities=25% Similarity=0.253 Sum_probs=71.6
Q ss_pred HcCCCCCCEEEEEcCccCcccc--------cCCCc-----------------------------------EEEEEeCCHH
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG--------LNPDC-----------------------------------FFVGCDISPS 153 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~--------~~~~~-----------------------------------~v~gvD~S~~ 153 (394)
+....++..++|--||+|.++- ..||. .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 3456677899999999999741 12211 3779999999
Q ss_pred HHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh-hhcCChhH----HHHHHHHHHhccccCcEEEEEE
Q 016157 154 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL-HHLSTESR----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 154 ~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl-~hl~~~~~----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++.|+.+ -|+|.++|+..++-+-+.+|+|||+--- .-+.+.+. -..+.+.+.+.++--++++++.
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999987 2789999999987544789999997421 11222211 2344556667777777777775
No 242
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.16 E-value=0.02 Score=51.92 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----------HHHHHHHHc---CCeEEEeecCCCCCCCCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----------SLIKICVDR---GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----------~~l~~a~~~---~i~~~~~D~~~lp~~~~~ 179 (394)
..+++|.+|+|+=-|.|.+.+. .+...|++.=..+ .+-..+++. +.+.+-.+...++ ..+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 3578999999999999998764 4444666653332 233333333 5555555555555 3445
Q ss_pred ccEEEehhhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~----~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.|++.....-|-+.. ..-...+..++++.|||||.+++.....
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 566655333222111 1226789999999999999999987543
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.12 E-value=0.017 Score=56.99 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCCCC-CCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP-YRSDF 179 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~lp-~~~~~ 179 (394)
.++...++|-+|.|.|.-++ ..|+ .+++-+|+.++|++.+++. .+.++..|+.++- -..+.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 34556799999999998754 3664 4899999999999999854 3678888887743 23468
Q ss_pred ccEEEeh------hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISI------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~------~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+||.- .++--+-+ .++-.-+.|.|+++|.+++..
T Consensus 366 fD~vIVDl~DP~tps~~rlYS----~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYS----VEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhh----HHHHHHHHHhcCcCceEEEec
Confidence 9999873 22322322 567778899999999999985
No 244
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.09 E-value=0.026 Score=53.94 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC---CCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~---~~fD~Vi~~~vl 189 (394)
+.++..|||||.|+|.++.. ..+..++++|+++.+++..+++ +++++.+|+..+.... +....|+++--.
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 44788999999999998653 2337999999999999999884 6899999999987654 344566665332
Q ss_pred hhcCChhHHHHHHHHHHhcccc
Q 016157 190 HHLSTESRRKKAIEELVRVVKK 211 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~Lkp 211 (394)
++ -..+|..+...-+.
T Consensus 108 -~i-----s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -NI-----SSPILRKLLELYRF 123 (262)
T ss_dssp -TG-----HHHHHHHHHHHGGG
T ss_pred -cc-----hHHHHHHHhhcccc
Confidence 33 24566666664344
No 245
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.011 Score=57.15 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=80.0
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHcCCCC-------CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHH----
Q 016157 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIK---- 156 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~-------g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~---- 156 (394)
.+.+++.++...+...|...++.+...+..+-| ..+||--|||.|+++- .--|..+-|-++|--|+-
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF 190 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 566666667776667777777777777765433 3589999999999752 122334444455544431
Q ss_pred ---HHHHc----------------------------------------CCeEEEeecCCCC---CCCCCccEEEehhhhh
Q 016157 157 ---ICVDR----------------------------------------GHEVLVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 157 ---~a~~~----------------------------------------~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
.++.. ....-.||+.+.- -..+.||+|+.++.|.
T Consensus 191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID 270 (369)
T KOG2798|consen 191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID 270 (369)
T ss_pred HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence 11111 1222345555421 1224799999987665
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-..+ ....|..|..+|||||..+=..
T Consensus 271 Ta~N---ileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 271 TAHN---ILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred chHH---HHHHHHHHHHhccCCcEEEecc
Confidence 5444 8899999999999999876543
No 246
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.039 Score=49.98 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=67.2
Q ss_pred CCCEEEEEcCccCccc-c-cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCC--CCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYL-G-LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRS--DFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l-~-~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~--~~fD~Vi~~~ 187 (394)
.|.++||+=+|+|.+. . +.+|+ .++.+|.+...+...+++ ...++..|+... +... +.||+|+.--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5889999999999973 2 34544 899999999999998887 357788888743 1122 2599999865
Q ss_pred hhhh-cCChhHHHHHHHH--HHhccccCcEEEEEEc
Q 016157 188 VLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~h-l~~~~~~~~~L~e--i~r~LkpGG~lli~~~ 220 (394)
-.+. +.+ ....+.. -...|+|+|.+++-.-
T Consensus 123 Py~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 123 PYAKGLLD---KELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 5441 111 2333333 4577999999998753
No 247
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.79 E-value=0.026 Score=52.16 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred EEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 126 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 126 VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
|.||||-.|.+.. ...--.++++|+++..++.|++. .+++..+|.+..--+.+..|.|+..++=-.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999998632 23334899999999999999887 4789999977632222336888876653333
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....|.+....++..-.|++.-
T Consensus 80 ----I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEEEEE
T ss_pred ----HHHHHHhhHHHhccCCeEEEeC
Confidence 5677887777777666776653
No 248
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.72 E-value=0.0054 Score=54.46 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=41.6
Q ss_pred EEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCC-ccEEEe
Q 016157 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS 185 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~-fD~Vi~ 185 (394)
.|+|+.||.|..+-. .....|+++|+++..++.|+.+ +++++++|+.++. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999986432 2345899999999999999987 4799999988753 22122 788886
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.63 E-value=0.0039 Score=50.71 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred EEEcCccCcccc----c-CCC--cEEEEEeCCH---HHHHHHHHc----CCeEEEeecCCC-C-CCCCCccEEEehhhhh
Q 016157 127 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVLH 190 (394)
Q Consensus 127 LDvGCG~G~~l~----~-~~~--~~v~gvD~S~---~~l~~a~~~----~i~~~~~D~~~l-p-~~~~~fD~Vi~~~vl~ 190 (394)
||||+..|..+. . .+. ..++++|..+ ...+..++. +++++.++..+. + +..++||+++.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689988888532 1 222 3799999999 444555432 578899988653 1 33578999998653
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|- .+.....+..+.+.|+|||.+++-.
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1226778999999999999998754
No 250
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.61 E-value=0.037 Score=54.73 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=67.0
Q ss_pred cCCCCCCEEEEEcCccCcc--c---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC--CCCCCCCCccEEEehhhhh
Q 016157 118 NSLPSGSLVLDAGCGNGKY--L---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~--l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~lp~~~~~fD~Vi~~~vl~ 190 (394)
..++||.+|+=+|+| |.- + ...-+++|+++|+|++-++.|++.+.+.+..... ....-.+.||+|+.... .
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~ 239 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P 239 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence 467899999999999 752 1 1234599999999999999999997655443221 11111234999998765 2
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..+....+.||+||++++.-..
T Consensus 240 ---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------hhHHHHHHHHhcCCEEEEECCC
Confidence 4567778999999999998644
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.45 E-value=0.053 Score=53.04 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----C
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 175 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~ 175 (394)
.++...+. ..++...+|.=-|.|..+ ...++..++|+|..+.+++.|+++ ++.++++++.++. .
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 45555555 456779999999999864 345669999999999999999876 4677888877653 2
Q ss_pred -CCCCccEEEe
Q 016157 176 -RSDFGDAAIS 185 (394)
Q Consensus 176 -~~~~fD~Vi~ 185 (394)
....+|.|+.
T Consensus 89 ~~~~~~dgiL~ 99 (310)
T PF01795_consen 89 NGINKVDGILF 99 (310)
T ss_dssp TTTS-EEEEEE
T ss_pred cCCCccCEEEE
Confidence 2346777765
No 252
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.03 Score=55.09 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCc-EEEEEeCCHHHHHHHHHc--CC-----eE----EEeecCCCCCCCCCccE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDC-FFVGCDISPSLIKICVDR--GH-----EV----LVADAVNLPYRSDFGDA 182 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~-~v~gvD~S~~~l~~a~~~--~i-----~~----~~~D~~~lp~~~~~fD~ 182 (394)
...|. +|||+|.|+|.-+.+ .|.. .++-++.|+.+-++...- ++ .+ ++.|-..+|. .+.|++
T Consensus 111 dfapq-siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 111 DFAPQ-SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred CcCcc-hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 34444 699999999986532 3443 566677887765554332 11 22 2233333433 234555
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++...-|-|...+..+...|+.+..++.|||.|+|...+.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 5555444444443335568999999999999999997554
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.087 Score=49.38 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHcCCeE---EEeecCCCC---CCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHEV---LVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~~i~~---~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
..+|..+||||+.||.|+.. ..++ .|+|+|.....+..--+.+.++ ...|+..+. + .+..|++++--.+-
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeehh
Confidence 35788999999999999753 4444 8999999987766544443333 334444443 2 23668888865443
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
- ...+|..+..+|+|+|.++..+
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEe
Confidence 2 5789999999999999988876
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.28 E-value=0.061 Score=49.19 Aligned_cols=99 Identities=20% Similarity=0.341 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCC-CC--CCCCC
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LP--YRSDF 179 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-lp--~~~~~ 179 (394)
....-+.|||||-|.++- ..|.--++|++|-...-++.+++ ++.+...++.. +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 344578999999998753 47888999999987776665554 34445444432 22 11121
Q ss_pred ccEEEehhhhhhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+=.+...---|+..... -...+.+..-+|++||.++..+
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111111111112211000 2457888889999999998876
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0087 Score=52.71 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=68.0
Q ss_pred CCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc---C--CeEEEeecCCC-------CCCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR---G--HEVLVADAVNL-------PYRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~l-------p~~~~~fD~Vi 184 (394)
.|.+|||+|.|--.++ . ..+...|.-.|-+...++-.++- + ...-.+-+..+ .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3578999999854332 2 36778999999999888776653 2 11111111111 12346899999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+..++..- +.+..+++.|.++|+|.|+.++..+-..+
T Consensus 109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99877543 33788999999999999998887765444
No 256
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.11 E-value=0.051 Score=54.33 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.3
Q ss_pred EEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC
Q 016157 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL 173 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l 173 (394)
.|||+-||.|.+.-. .....|+|+|+++.+++.|+++ +++|+.+++.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 899999999998532 3445899999999999999876 578888876543
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.95 E-value=0.034 Score=47.48 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred EEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc
Q 016157 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 125 ~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
.+||||||.|.+. ...+..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999874 235666999999999999888775
No 258
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.93 E-value=0.16 Score=49.63 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=72.6
Q ss_pred HcCCCCCCEEEEEcCccCc-----ccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-----------CCCCCCc
Q 016157 117 LNSLPSGSLVLDAGCGNGK-----YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFG 180 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~-----~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------p~~~~~f 180 (394)
...+++|++||=+|+|+=. .++...-.+|+.+|+++.-++.|++.|.+.+.-+.... .+....+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 3457899999999999633 23345556999999999999999998876654443321 1223458
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|+.+....+ ...++.....||+||.+++..|..+..
T Consensus 244 d~~~dCsG~---------~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 244 DVTFDCSGA---------EVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred CeEEEccCc---------hHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 998887653 456667788999999988888876543
No 259
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.059 Score=55.32 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCccCcccc-c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC---CCCccEEEehhh
Q 016157 121 PSGSLVLDAGCGNGKYLG-L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~-~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~---~~~fD~Vi~~~v 188 (394)
.++.++||+=||.|.+.- . ....+|+|+|+++++++.|+++ |+.|..+++++.... ...+|.|+.---
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 456799999999999854 2 3556999999999999999887 578899999886533 247899987321
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
=.-+ -..+++.+.+ ++|-..++++.
T Consensus 372 R~G~-----~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 372 RAGA-----DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCC-----CHHHHHHHHh-cCCCcEEEEeC
Confidence 0000 1355555555 56777777775
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.041 Score=56.67 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=44.6
Q ss_pred cCCCCCCEEEEEcCccCcccc-c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN 172 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~ 172 (394)
..++.+..+||+-||||.+-. . .+-..|+|+++++..++-|+++ |.+|+++-+++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 357888999999999999743 2 3445899999999999999887 57899995555
No 261
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.66 E-value=0.071 Score=53.77 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=39.9
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChh-----------------------------------HHHHHHHHHHhccccCc
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTES-----------------------------------RRKKAIEELVRVVKKGS 213 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~-----------------------------------~~~~~L~ei~r~LkpGG 213 (394)
.+..--|+.++.+++++.+.+||++... ....+|+.=++-|.|||
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG 231 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGG 231 (386)
T ss_pred cccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3334447899999999999999987410 02334444556689999
Q ss_pred EEEEEEcCccc
Q 016157 214 LVLITVWAVEQ 224 (394)
Q Consensus 214 ~lli~~~~~~~ 224 (394)
+++++..+...
T Consensus 232 ~mvl~~~Gr~~ 242 (386)
T PLN02668 232 AMFLVCLGRTS 242 (386)
T ss_pred EEEEEEecCCC
Confidence 99999877643
No 262
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.28 E-value=0.24 Score=49.98 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~V 183 (394)
.+.||.+|||+.+.+|.=. .. .....|++.|.+..-+...+.+ +..+...|...+| ++. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3568899999999999732 22 3445899999999887776655 3445666776655 333 88988
Q ss_pred Eehh------hhhh------cC-------ChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 184 ISIA------VLHH------LS-------TESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 184 i~~~------vl~h------l~-------~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
+.-+ ++.- .. -....+++|-.+..++++||+|+-++-+..-++
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 7522 1110 00 000146788889999999999999987665443
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.23 E-value=0.17 Score=46.86 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~f 180 (394)
+......++.+.++.||||-.|++.. ..+...+++.|++++.++.|.+. .+++..+|....--.++.+
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCc
Confidence 33334445667779999999998633 36667899999999999999876 3566777775432335578
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|+|+..++=--+ ....|++-..-|+.==++++.
T Consensus 87 d~ivIAGMGG~l-----I~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 87 DVIVIAGMGGTL-----IREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CEEEEeCCcHHH-----HHHHHHHhhhhhcCcceEEEC
Confidence 999887653322 566777777777633344443
No 264
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.18 E-value=0.068 Score=48.64 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
-.|.+|||+|.|+|.-.- ...| ..|+..|+.+..+...+-+ ++.+...|... .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 357899999999998532 2333 3788899987766554433 35566666655 4678999999987764
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-+. ..+++.-..++...|-.+++-
T Consensus 155 ~~~---a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HTE---ADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred chH---HHHHHHHHHHHHhCCCEEEEe
Confidence 433 466777444444444444433
No 265
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.70 E-value=0.12 Score=50.30 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHHcCCCC----CCEEEEEcCccCcc---cc-cCCCcEEEEEeCCHHHHHHHHHc---C------CeEEEeecCC---
Q 016157 113 VATFLNSLPS----GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN--- 172 (394)
Q Consensus 113 l~~~l~~l~~----g~~VLDvGCG~G~~---l~-~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~~D~~~--- 172 (394)
+.+++....+ .-++||||+|.... +. ...++.++|+|+++..++.|++. + |+++...-..
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 4555554332 45899999998753 22 23478999999999999999876 3 5665443221
Q ss_pred --CCCCCCCccEEEehhhhhhcC
Q 016157 173 --LPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 173 --lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+....+.||+.+|+--++--.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS-
T ss_pred hhhhcccceeeEEecCCccccCh
Confidence 222346899999988776543
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.34 E-value=0.33 Score=50.88 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-----------CC----------C
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------LP----------Y 175 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------lp----------~ 175 (394)
.++.+||=+|||.=.+.. ...|..|+++|.+++-++.+++.|.++...|..+ +. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468899999999755422 2456689999999999999999988866444322 10 0
Q ss_pred CC--CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 ~~--~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ ..+|+||.......-+. +..+.+++.+.+||||+++....
T Consensus 243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence 11 35899999876543333 33445999999999999877653
No 267
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.34 E-value=0.22 Score=49.46 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=57.3
Q ss_pred CCEEEEEcCccCcccc--------------------cCCCcEEEEEeCCHHH-------HHHH----HHcCC---eEEEe
Q 016157 123 GSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSL-------IKIC----VDRGH---EVLVA 168 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--------------------~~~~~~v~gvD~S~~~-------l~~a----~~~~i---~~~~~ 168 (394)
.-+|+|+||..|..+- ..|...|+--|+-.+= +..- ...+- ..+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3589999999998521 0234688888875431 1111 11121 22445
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChh------------------------------------HHHHHHHHHHhccccC
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTES------------------------------------RRKKAIEELVRVVKKG 212 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~------------------------------------~~~~~L~ei~r~LkpG 212 (394)
.+..--+++++.|++++...|||++... +...+|+.=++-|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 5666558899999999999999986410 1234455555668999
Q ss_pred cEEEEEEcCccc
Q 016157 213 SLVLITVWAVEQ 224 (394)
Q Consensus 213 G~lli~~~~~~~ 224 (394)
|++++...+...
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999999987665
No 268
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.34 E-value=0.12 Score=53.53 Aligned_cols=94 Identities=12% Similarity=0.248 Sum_probs=74.2
Q ss_pred CEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 124 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..|+=+|.|.|-+.. ..+..++++++-++.++-..+.+ .++++..|+..++.+....|++++ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence 367899999998743 25678999999999988776655 578999999999865688898876 44
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|--+.+.|.-.+.|.-+.+.|||.|+.+=.
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 555556555678999999999999876644
No 269
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.25 E-value=0.1 Score=48.28 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC----CCCCCCccEEEehh
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA 187 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----p~~~~~fD~Vi~~~ 187 (394)
...|+|.-||-|...- ...+..|+++|+++.-+..|+.+ .++|+++|++++ .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 3579999998887542 35677999999999999999887 478999999874 24444556666543
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.24 E-value=0.099 Score=48.16 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc-------cc-CCCcEEEEEeCCHHHHH-HHHH-----cCCeEEEeecCCCC----
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLIK-ICVD-----RGHEVLVADAVNLP---- 174 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l-------~~-~~~~~v~gvD~S~~~l~-~a~~-----~~i~~~~~D~~~lp---- 174 (394)
+.+++-.++|. .|+|+|.-.|.-+ .. ....+|+|+|+...... .+.+ .+++++++|..+..
T Consensus 24 ~qeli~~~kPd-~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 24 YQELIWELKPD-LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp HHHHHHHH--S-EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred HHHHHHHhCCC-eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 34455556675 8999999998743 22 47789999999544332 2222 37999999987642
Q ss_pred CC----CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 YR----SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 ~~----~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. .....+|+.- . +|.... ..+.|+....+++||+++++....
T Consensus 103 v~~~~~~~~~vlVilD-s-~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 103 VRELASPPHPVLVILD-S-SHTHEH--VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SGSS----SSEEEEES-S-----SS--HHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHhhccCCceEEEEC-C-CccHHH--HHHHHHHhCccCCCCCEEEEEecc
Confidence 11 1222344432 2 233221 577888899999999999887643
No 271
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.06 E-value=0.35 Score=48.58 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=65.6
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeecCC-C-----CC-CCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----p~-~~~~fD~Vi 184 (394)
..+.++.+||.+|||. |..+. ...+. .++++|.++..++.+++. +..++...-.+ + .+ ....+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 4567889999999986 65532 23444 699999999999999887 55443222111 1 11 123689998
Q ss_pred ehhhh-----------hhc----CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVL-----------HHL----STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl-----------~hl----~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..-.- .|. .+ ....+.++.++|+|+|++++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence 75321 111 12 3568899999999999998874
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.97 E-value=0.49 Score=45.97 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN 172 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~ 172 (394)
+...+. ..+++..+|.--|.|..++ . .+...++|+|..+.+++.|+++ ++.+++.++.+
T Consensus 15 ~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 15 VVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 333343 4566799999999998654 2 3346799999999999999986 35666665544
No 273
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.87 E-value=0.48 Score=45.92 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=64.2
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC------CCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------p~~~~~fD~Vi~~~ 187 (394)
..+.++.+||..|+|. |..+ ....+..+++++.++...+.+++.++..+..+-... ......+|+++...
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 3467888999988763 4443 224567899999999999998877765443322111 12345689887643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ....+.++.+.|+++|+++...+.
T Consensus 241 g---------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 241 G---------TQPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred C---------CHHHHHHHHHHhhcCCEEEEECCC
Confidence 2 135678889999999999987543
No 274
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.68 E-value=0.071 Score=44.00 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=30.3
Q ss_pred CccEEEehhhhhhcC---ChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLS---TESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~---~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+|..|.-++. .++-...+++.+++.|+|||.|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999988755432 12337899999999999999999863
No 275
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.49 E-value=0.099 Score=46.15 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCCccEEEehhhhhhcC--------ChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 177 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~--------~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.++||++.|..+|+|+- ++..-.+++.++.++|||||.+++.++-..+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 47899999999999973 1112367889999999999999999986643
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.79 E-value=0.61 Score=48.79 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=81.7
Q ss_pred HHHHHHHhhcccccccc------ccchHHHHHHHc---CCCCCCEEEEEcCccCccccc-------CC-CcEEEEEeCCH
Q 016157 90 YVHRVYDAIAPHFSSTR------FAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDISP 152 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~------~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~-------~~-~~~v~gvD~S~ 152 (394)
.+..+|+.....|.... +-..+.+..++. .+.+..+|+|-.||+|.++.. .. ...++|.|++.
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~ 224 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND 224 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH
Confidence 44555555555554322 222233333332 224677999999999987531 11 36799999999
Q ss_pred HHHHHHHHc----CCe----EEEeecCCCCC-----CCCCccEEEehhhhh---hcC------------------C-hhH
Q 016157 153 SLIKICVDR----GHE----VLVADAVNLPY-----RSDFGDAAISIAVLH---HLS------------------T-ESR 197 (394)
Q Consensus 153 ~~l~~a~~~----~i~----~~~~D~~~lp~-----~~~~fD~Vi~~~vl~---hl~------------------~-~~~ 197 (394)
.....|+-+ ++. ...+|-..-|. ..+.||+|+++--+. +.. . ...
T Consensus 225 ~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
T COG0286 225 TTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA 304 (489)
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch
Confidence 999999876 443 34455444442 236799998854332 111 0 111
Q ss_pred HHHHHHHHHhccccCcEEEEEEcC
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
-..+++.+...|+|||+..|..+.
T Consensus 305 ~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 305 DLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 278899999999999987777654
No 277
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=1.2 Score=38.96 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~ 179 (394)
..+..++.. .+.++.+|+|+|.|+..- ..-+ ...+|+++++-++.+++-+ ...|..-|+....+.+
T Consensus 62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d-- 138 (199)
T KOG4058|consen 62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD-- 138 (199)
T ss_pred HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--
Confidence 344555554 344589999999999743 2223 4689999999999887754 3567778887766654
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|..++.+.+=.-+++ .-..+..-+..+.+++-.-|..
T Consensus 139 y~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred cceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecCC
Confidence 344444443333332 2334444566777777766544
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.38 E-value=0.85 Score=44.21 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCccCccccc---CCCc-EEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC--CCCCCccE
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDA 182 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~-~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp--~~~~~fD~ 182 (394)
++...++|=||-|.|.+++. .+.. +++-+|+....++..++. .+.+..+|...+- ...+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34456999999999999863 2333 788899999988887765 4677788765432 34689999
Q ss_pred EEehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 016157 183 AISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 183 Vi~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|+.-..---.+.. --.+...+.+.+.||+||++++..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9873211111100 014678899999999999999875
No 279
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.70 E-value=0.22 Score=46.43 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=65.4
Q ss_pred CEEEEEcCccCccccc---------C-CC---cEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccE
Q 016157 124 SLVLDAGCGNGKYLGL---------N-PD---CFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDA 182 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~---------~-~~---~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~ 182 (394)
.+++|+...+|.+... . .+ ..++++|+-+ | |--.|+--+++|+.... |..+..|+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 6899999999987431 1 11 2499999853 1 11237788899998743 55678999
Q ss_pred EEehh-----hhhhcCC---hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIA-----VLHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~-----vl~hl~~---~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|-+ .||-+.. .+.+..+|.-...+|||||.|+--.|-.
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 99944 3444432 1235677888889999999998776543
No 280
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.56 E-value=1.3 Score=44.12 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc--C--CCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeecCCCC------
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL--N--PDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLP------ 174 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~--~--~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~lp------ 174 (394)
++..+.||.+|||+...+|.=. .. . ....|++=|.+..-+.... ++ ++.+...|+...|
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 3456789999999999999732 22 1 1348999999886444333 22 2333333433332
Q ss_pred ---CCCCCccEEEeh------hhhhhcCCh--------------hHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 175 ---YRSDFGDAAISI------AVLHHLSTE--------------SRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 175 ---~~~~~fD~Vi~~------~vl~hl~~~--------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.....||-|++- .++.+-++- .-...+|.+-.++||+||+++-++-+.....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpie 303 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIE 303 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchh
Confidence 223468888761 122221111 1135788999999999999999998776543
No 281
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=2.2 Score=40.45 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCccCcccc----c----CCCcEEEEEeCCHHHHHHHHHc------CCe--EEEeecCC----CCCCCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR------GHE--VLVADAVN----LPYRSDF 179 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~----~~~~~v~gvD~S~~~l~~a~~~------~i~--~~~~D~~~----lp~~~~~ 179 (394)
.-.+..++|+|+|+..-.+ . ..-..++.+|+|...++.-.+. +++ -+.+|.+. +| ..++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCe
Confidence 3346789999999987322 1 2235899999999988654332 443 35556542 33 2333
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
==.++....|-.+...+ ...+|..+...|+||-.+++-+-
T Consensus 155 Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 155 RLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEecc
Confidence 33455566788887655 78999999999999999999874
No 282
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.00 E-value=0.67 Score=48.56 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-----------------------CC
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP 174 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------------------lp 174 (394)
++.++|=+|+|.=.... ...+..|+++|.++.-++.++..+.+++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 46799999999754321 2456789999999999999988887776666421 11
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
-.-..+|+|+....+..-+. +.-..+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEE
Confidence 11246899988876655444 5567889999999998865
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.93 E-value=0.19 Score=41.34 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=20.2
Q ss_pred CCEEEEEcCccCcccc--cCCCcEEEEEeC
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDCFFVGCDI 150 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~~v~gvD~ 150 (394)
....+|||||+|.+.- ..-|..=.|+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 4579999999998643 245556678875
No 284
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.90 E-value=0.89 Score=43.16 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCCEEEEEcCccCcc---cccCCCcEEEEEeCCHHHHHH--HHHc--------CCeEEEeec-----CCCCCCCCC-ccE
Q 016157 122 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKI--CVDR--------GHEVLVADA-----VNLPYRSDF-GDA 182 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~---l~~~~~~~v~gvD~S~~~l~~--a~~~--------~i~~~~~D~-----~~lp~~~~~-fD~ 182 (394)
....||++|.|+|.- +....+..|+-.|+..-+... .+++ +..+....+ ....+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 355799999999953 223467788888876654332 2222 212222221 111122234 999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
|++.-++.+-.. ...++.-++..|-.+|.+++...-.+.
T Consensus 166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEecccc
Confidence 999999988877 567788888888888876666654443
No 285
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.63 E-value=0.75 Score=39.03 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-CCCccEEEe
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAIS 185 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-~~~fD~Vi~ 185 (394)
|.++..++.......+|+|||-|.=.-.. ...|..|+++|+.+. .+. .++.++..|+.+..+. -...|+|.+
T Consensus 1 ~~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 1 MVDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp HHHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CchHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEE
Confidence 44566666654555699999987644321 145689999999988 333 5899999999984321 145788888
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+-. .++ ....|-++++. -|.-++|...+.+..
T Consensus 77 iRP-----P~E-l~~~il~lA~~--v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 77 IRP-----PPE-LQPPILELAKK--VGADLIIRPLGGESP 108 (127)
T ss_dssp ES-------TT-SHHHHHHHHHH--HT-EEEEE-BTTB--
T ss_pred eCC-----ChH-HhHHHHHHHHH--hCCCEEEECCCCCCC
Confidence 653 222 56667777764 466788887776653
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=87.58 E-value=0.31 Score=46.83 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCccCccc---ccCCCcEEEEEeCCHHHHHHHHHc--------------C---CeEEEeecCCCCC-CCC-
Q 016157 121 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------------G---HEVLVADAVNLPY-RSD- 178 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~--------------~---i~~~~~D~~~lp~-~~~- 178 (394)
-.|.+|||+|||.|.-- .......+...|.|...++.-.-- . ..+...++.++-+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 46789999999998742 222225677777777765321110 0 1112221111111 113
Q ss_pred -CccEEEehhhhhhcCChhHHHHH-HHHHHhccccCcEEEEEE
Q 016157 179 -FGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 -~fD~Vi~~~vl~hl~~~~~~~~~-L~ei~r~LkpGG~lli~~ 219 (394)
.||+|.+...+...... ... +.....+++++|++++..
T Consensus 195 ~~ydlIlsSetiy~~~~~---~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSL---AVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchh---hhhHhhhhhhcCCccchhhhhh
Confidence 79999999998877662 233 667778889999887763
No 287
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.19 E-value=2.7 Score=41.22 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCccCc-cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..+.+|.+||=.|+|.-. ++ ....+..+++++.++.-++.+++.|...+. |..+. ..+.+|+++.....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi-~~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAG-GAYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceec-ccccc--CcccceEEEECCCc----
Confidence 356789999999975322 21 124567899999999999999988765432 11111 12357876643321
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+....+.|++||++++.-.
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 2467888899999999988754
No 288
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.04 E-value=0.56 Score=46.30 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-----------C-----CeEEEeecCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-----------G-----HEVLVADAVN 172 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-----------~-----i~~~~~D~~~ 172 (394)
.-+..-++...||..|+|-=.|||.++- ..-|+.|+|.||.-.+++..+.. + +.++.+|..+
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 3445555678999999999999999864 35678999999999988843322 2 5788899998
Q ss_pred CCCCC-CCccEEEe
Q 016157 173 LPYRS-DFGDAAIS 185 (394)
Q Consensus 173 lp~~~-~~fD~Vi~ 185 (394)
-|+.. ..||+|+|
T Consensus 277 ~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVC 290 (421)
T ss_pred cchhhcceeeEEEe
Confidence 88654 58999998
No 289
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.69 E-value=2.1 Score=42.12 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe----ecCCCCCCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+|.+||=+|||. |.++ ....+. .|+++|.+++-++.+++.|...+.. ++.++....+.+|+|+....
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4688999898752 2221 124465 7999999999999999887654321 11111111235898876533
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.++|++||++++...
T Consensus 245 --~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 3467788899999999988754
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=85.77 E-value=0.64 Score=44.97 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred CeEEEeecCCC--CCCCCCccEEEehh--hh--h--h----cCCh---hHHHHHHHHHHhccccCcEEEEEE
Q 016157 163 HEVLVADAVNL--PYRSDFGDAAISIA--VL--H--H----LSTE---SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 163 i~~~~~D~~~l--p~~~~~fD~Vi~~~--vl--~--h----l~~~---~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++++|+.+. .+++++||+|++.- .+ . . .... .-....|.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46777887763 35678899998842 11 0 0 0000 013578999999999999999863
No 291
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.76 E-value=3.5 Score=38.09 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~~ 187 (394)
.+.++.+||-.|+|. |..+. ...+..+++++.++...+.+++.+...+. +..... .....+|+++...
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 346789999999986 43321 24568999999999888888766532221 211111 1235689998653
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. . ...+..+.+.|+++|+++....
T Consensus 210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 G-----G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEcc
Confidence 2 1 1456777889999999887654
No 292
>PHA01634 hypothetical protein
Probab=84.04 E-value=4.3 Score=34.69 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=47.0
Q ss_pred cchHHHHHHHcCC-CCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHcCCe-EEEeec----CCCCCCCC
Q 016157 108 AKWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHE-VLVADA----VNLPYRSD 178 (394)
Q Consensus 108 ~~~~~l~~~l~~l-~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~~i~-~~~~D~----~~lp~~~~ 178 (394)
..|+....-...+ -.+.+|+|||.+-|.-+-+ ..|+ .|+++++++.+.+..++. +. +...|- .+++-.-+
T Consensus 13 ~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~ 91 (156)
T PHA01634 13 DYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYE 91 (156)
T ss_pred hHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCC
Confidence 3455544333332 2467999999999985432 3444 899999999999998875 21 122221 13333335
Q ss_pred CccEEEe
Q 016157 179 FGDAAIS 185 (394)
Q Consensus 179 ~fD~Vi~ 185 (394)
.||+.++
T Consensus 92 ~~Di~~i 98 (156)
T PHA01634 92 DVDIFVM 98 (156)
T ss_pred CcceEEE
Confidence 6787765
No 293
>PRK13699 putative methylase; Provisional
Probab=83.45 E-value=0.84 Score=42.75 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=35.5
Q ss_pred eEEEeecCCC--CCCCCCccEEEehh--hh--hhcCC--------hhHHHHHHHHHHhccccCcEEEEE
Q 016157 164 EVLVADAVNL--PYRSDFGDAAISIA--VL--HHLST--------ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 164 ~~~~~D~~~l--p~~~~~fD~Vi~~~--vl--~hl~~--------~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+++.+|+.++ .++++++|+|+..- .+ .+-.. .+-....+.++.|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5667777664 46678888888751 11 10000 011357899999999999988763
No 294
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.45 E-value=3.6 Score=37.57 Aligned_cols=108 Identities=12% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeecCCCC-------C
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP-------Y 175 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~lp-------~ 175 (394)
+.+++-.++|. .|+|+|.-.|.-+- .....+|+++|++-..++-+.. .++.|++++-.+.. .
T Consensus 61 yQellw~~~P~-lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 61 YQELLWELQPS-LVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred HHHHHHhcCCc-eeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 34555566665 89999999887432 2344799999999877654433 38999999887643 2
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
..+.--+.++-...||... ..+.|+-..++|.-|-++++..-..++
T Consensus 140 ~~~y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 140 KNEYPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred hcCCCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEecccccC
Confidence 2233345555566666654 677788888999999888877544433
No 295
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.25 E-value=5.8 Score=38.31 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcCc-cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC-CCC-CCCCCccEEEehhhhhh
Q 016157 118 NSLPSGSLVLDAGCG-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP-YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG-~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~lp-~~~~~fD~Vi~~~vl~h 191 (394)
..+.++.+||-+|+| .|..+. ...+..+++++.+...++.+++.+...+..+.. ... -..+.+|+++....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 356788899999886 444321 245678999999999988887666433222111 110 01245888876422
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....+..+.+.|+++|+++....
T Consensus 235 ------~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 ------SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ------cHHHHHHHHHhcccCCEEEEECC
Confidence 13467788899999999988753
No 296
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.19 E-value=3.3 Score=34.25 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-------C-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccC
Q 016157 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 141 ~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------p-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpG 212 (394)
.+.+|+++|.++.-++.+++.+...+. |..+. . .....+|+|+-... . ...++....+|+|+
T Consensus 13 ~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~~ 82 (130)
T PF00107_consen 13 MGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRPG 82 (130)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEEE
T ss_pred cCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhccC
Confidence 348999999999999999998754432 22221 1 22347999987643 1 46888999999999
Q ss_pred cEEEEEEcCc
Q 016157 213 SLVLITVWAV 222 (394)
Q Consensus 213 G~lli~~~~~ 222 (394)
|++++.....
T Consensus 83 G~~v~vg~~~ 92 (130)
T PF00107_consen 83 GRIVVVGVYG 92 (130)
T ss_dssp EEEEEESSTS
T ss_pred CEEEEEEccC
Confidence 9999987654
No 297
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=83.08 E-value=4.4 Score=39.43 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeE-EEee---cCCCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEV-LVAD---AVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~-~~~D---~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
++.+||-.|||. |..+. ...+. .+++++.++...+.+++.+... +..+ +..+....+.+|+++.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 788899888764 44331 24466 7999999999888877766432 2111 11121122348998865331
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...++.+.+.|+++|+++....
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEec
Confidence 2457788999999999987653
No 298
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.95 E-value=1.5 Score=44.37 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=51.3
Q ss_pred CCeEEEeecCCCC--CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 ~i~~~~~D~~~lp--~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++++..+++.+.. .+++++|.++....+.++++.. ..+.++++.+.++|||++++-..+..
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 5788888887642 4578999999999999998755 89999999999999999999876543
No 299
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.88 E-value=1.6 Score=44.88 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=63.5
Q ss_pred CEEEEEcCccCccccc------CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEe-ecC--CCCCC-CCCccEEEeh
Q 016157 124 SLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-------GHEVLVA-DAV--NLPYR-SDFGDAAISI 186 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~------~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~-D~~--~lp~~-~~~fD~Vi~~ 186 (394)
..++|+|.|.|.-..+ ...-.++-||.|..|+...... +-.++.. -+. .+|.. .+.||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 4688899987764321 2234789999999998877654 1112222 111 24433 3459999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhc-cccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRV-VKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~-LkpGG~lli~~ 219 (394)
+.++++.+...+....++..+. .++||.+++..
T Consensus 282 h~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 282 HKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 9999998876666666666554 57777777764
No 300
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.80 E-value=5.4 Score=38.58 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCC-C----CCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-L----PYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l----p~~~~~fD~Vi~~~ 187 (394)
..+.++.+||-+|+|. |..+ ....+.. +++++.+++..+.+++.++..+...... . ......+|+++...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 4567888999998642 3332 1245565 8999999999888877776532222111 1 01235689998642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ....+.++.++|+++|+++...+.
T Consensus 235 ~---------~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 235 G---------VPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred C---------ChHHHHHHHHHHhcCCEEEEEecC
Confidence 1 135678888999999999877543
No 301
>PRK10742 putative methyltransferase; Provisional
Probab=82.27 E-value=2.9 Score=39.71 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCCCCC--EEEEEcCccCccc--ccCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeecCCC-CCCC
Q 016157 119 SLPSGS--LVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS 177 (394)
Q Consensus 119 ~l~~g~--~VLDvGCG~G~~l--~~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l-p~~~ 177 (394)
.+++|. +|||+=+|.|... ....|+.|+++|.++.+....++. +++++.+|..+. .-..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 456666 8999999999963 235688899999999765443321 355666776553 2123
Q ss_pred CCccEEEehhhhhh
Q 016157 178 DFGDAAISIAVLHH 191 (394)
Q Consensus 178 ~~fD~Vi~~~vl~h 191 (394)
.+||+|+.--.+.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999988665555
No 302
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.02 E-value=8.3 Score=38.37 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCcc-Cccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCC-C-----CCC-CCCccEEEehh
Q 016157 121 PSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PYR-SDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----p~~-~~~fD~Vi~~~ 187 (394)
.++.+|+=+|||+ |.++ +......|+.+|+++.-++.|++. +...+.....+ . ... ...+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4455999999997 4432 224456899999999999999984 54444333221 0 111 23689998876
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
. . ..++..+.++++|||++.+.-....
T Consensus 247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 247 G-----S----PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred C-----C----HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 5 1 3588999999999999998876543
No 303
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.95 E-value=2.7 Score=39.51 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEe-ecCC----CCCCCCCccEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------GHEVLVA-DAVN----LPYRSDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~-D~~~----lp~~~~~fD~V 183 (394)
++.++||||.|.--.-. ..-+++.+|.|+++..++.|+.. .+++... |-.. +--..+.||+.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 55789999988765322 25678999999999999988764 2444322 2211 11235789999
Q ss_pred Eehhhhhh
Q 016157 184 ISIAVLHH 191 (394)
Q Consensus 184 i~~~vl~h 191 (394)
+|+--+|-
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99988774
No 304
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.43 E-value=4.7 Score=41.27 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=65.2
Q ss_pred cchHHHHHHHcCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEE
Q 016157 108 AKWPKVATFLNSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 108 ~~~~~l~~~l~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~V 183 (394)
..|..+.......-+|.+|+=+|+|. |... ....|..|+.+|+++.-+..|+..|...... .+. . ..+|+|
T Consensus 187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~--~e~-v--~~aDVV 261 (413)
T cd00401 187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM--EEA-V--KEGDIF 261 (413)
T ss_pred hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH--HHH-H--cCCCEE
Confidence 34555555555556799999999996 3322 1245678999999998888888877754422 111 1 347999
Q ss_pred EehhhhhhcCChhHHHHHHHH-HHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~e-i~r~LkpGG~lli~~ 219 (394)
+.... . ..++.. ..+.+|+||+++...
T Consensus 262 I~atG-----~----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-----N----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-----C----HHHHHHHHHhcCCCCcEEEEeC
Confidence 87532 2 234444 588999999987765
No 305
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.42 E-value=3.1 Score=41.61 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=64.4
Q ss_pred CCEEEEEcCccCc----ccccCCCcEEEEEeCCHHHHHHHHHc---C----CeEEEeecCCCCCC-CCCccEEEehhhhh
Q 016157 123 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPYR-SDFGDAAISIAVLH 190 (394)
Q Consensus 123 g~~VLDvGCG~G~----~l~~~~~~~v~gvD~S~~~l~~a~~~---~----i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~ 190 (394)
..+|||.=+|+|. ++...+...++.-|+|+.+++.++++ | ...+..|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 4689999999997 33334444899999999999999887 2 34455565443221 3677777431
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-+.+ +..++..+.+.++.||.+.++.
T Consensus 129 PFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 2233 6788999999999999999985
No 306
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=80.91 E-value=2 Score=43.46 Aligned_cols=91 Identities=24% Similarity=0.195 Sum_probs=62.7
Q ss_pred CCCEEEEEcCccCc----ccccCCC-cEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC-CCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGK----YLGLNPD-CFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~----~l~~~~~-~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp-~~~~~fD~Vi~~ 186 (394)
...+|||.=+|+|. |+...++ ..|+.-|+|+.+++..+++ .+++...|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 34689999999997 3333233 4899999999999998887 1456677776542 246789998642
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
- +.+ +..+|..+.+.+|.||.|.++.
T Consensus 129 P----fGS---p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 P----FGS---PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CCC---ccHhHHHHHHHhhcCCEEEEec
Confidence 1 223 6789999999999999999985
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.51 E-value=6.8 Score=38.60 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeC---CHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~---S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~v 188 (394)
..+|.+||=+|+|. |.++ ....+..+++++. ++.-++.+++.+...+ +..+.. .....+|+|+-...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence 35788999999863 2222 1245668999987 6788888888877653 222111 01245888887643
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ...+.+..++|++||++++.-..
T Consensus 248 -----~----~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 -----V----PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -----C----HHHHHHHHHHccCCcEEEEEecC
Confidence 1 24678889999999998876543
No 308
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.29 E-value=5.6 Score=37.38 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCcE-EEEEeCCHHHHHHHHHcC-CeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~~-v~gvD~S~~~l~~a~~~~-i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
..+.++.+||=.|+|. |..+. ...+.. +++++.+++.++.+++.+ ..-+. +...-......+|+++....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC---
Confidence 4567888899888764 33321 234556 999999999888888776 11110 00100012345898886422
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+..+.+.|+++|+++...
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246777888999999998764
No 309
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.56 E-value=8.3 Score=31.25 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 141 ~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
.+..++.+|.+++.++.+++.++.++.+|..+.. ..-...|.+++..- +++ ....+....+-+.|...++
T Consensus 20 ~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~-~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDE-ENLLIALLARELNPDIRII 93 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHH-HHHHHHHHHHHHTTTSEEE
T ss_pred CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC-----CHH-HHHHHHHHHHHHCCCCeEE
Confidence 4458999999999999999999999999998743 22356777776532 322 4455666677788888888
Q ss_pred EEEcCc
Q 016157 217 ITVWAV 222 (394)
Q Consensus 217 i~~~~~ 222 (394)
......
T Consensus 94 ~~~~~~ 99 (116)
T PF02254_consen 94 ARVNDP 99 (116)
T ss_dssp EEESSH
T ss_pred EEECCH
Confidence 876543
No 310
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.33 E-value=2.3 Score=35.50 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChh
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.+| +|+|||.|.=.... ...|+.++++|+.+. .|. .++.+...|+.+.... -...|+|.++-. .++
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY~~A~lIYSiRp-----ppE 82 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-EGLRFVVDDITNPNISIYEGADLIYSIRP-----PPE 82 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-ccceEEEccCCCccHHHhhCccceeecCC-----CHH
Confidence 344 99999876533221 256789999999987 343 5899999999884321 134577776532 222
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
....+-++++.+ |..++|....
T Consensus 83 -l~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 83 -LQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred -HHHHHHHHHHhh--CCCEEEEecC
Confidence 555555555544 4455555443
No 311
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=78.92 E-value=18 Score=36.47 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCEEEEEcCccCcc----c---cc----CCCcEEEEEeC----CHHHHHHHHHc--------CCeE--EE---eecCCC
Q 016157 122 SGSLVLDAGCGNGKY----L---GL----NPDCFFVGCDI----SPSLIKICVDR--------GHEV--LV---ADAVNL 173 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~----l---~~----~~~~~v~gvD~----S~~~l~~a~~~--------~i~~--~~---~D~~~l 173 (394)
..-.|+|+|.|.|.- + .. .|..++||++. +...++.+.++ |+.| .. .+..++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 446899999999972 1 11 35569999999 66555554443 6544 22 122222
Q ss_pred -----CCCCCCccEEEehhhhhhcCChh-----HHHHHHHHHHhccccCcEEEE
Q 016157 174 -----PYRSDFGDAAISIAVLHHLSTES-----RRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 174 -----p~~~~~fD~Vi~~~vl~hl~~~~-----~~~~~L~ei~r~LkpGG~lli 217 (394)
...++..=+|-+...+||+.+.. .+..+| ...+.|+|.-.+++
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPKVVVLV 242 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCCEEEEE
Confidence 23345555556677889987321 133455 55567899844443
No 312
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.75 E-value=1.7 Score=40.86 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=40.2
Q ss_pred CCCCC--CEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHH-------Hc---------CCeEEEeecCC-CCCCC
Q 016157 119 SLPSG--SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICV-------DR---------GHEVLVADAVN-LPYRS 177 (394)
Q Consensus 119 ~l~~g--~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~-------~~---------~i~~~~~D~~~-lp~~~ 177 (394)
.+++| .+|||.-+|-|.-+- ..-|++|++++.|+-+....+ +. .++++.+|..+ |..++
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD 149 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence 34555 389999999998421 234779999999997543322 11 47899999887 55557
Q ss_pred CCccEEEehhhhhh
Q 016157 178 DFGDAAISIAVLHH 191 (394)
Q Consensus 178 ~~fD~Vi~~~vl~h 191 (394)
++||+|..--.+.+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999777665
No 313
>PTZ00357 methyltransferase; Provisional
Probab=78.07 E-value=5 Score=43.37 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=61.9
Q ss_pred EEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHHc--------C--------CeEEEeecCCCCCCC---
Q 016157 125 LVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR--------G--------HEVLVADAVNLPYRS--- 177 (394)
Q Consensus 125 ~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~~--------~--------i~~~~~D~~~lp~~~--- 177 (394)
.|+=+|+|-|-+.. ....++|++|+-++..+.....+ + ++++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999743 24467999999996532222111 2 689999999874321
Q ss_pred --------CCccEEEehhhhhhcCChhHHHHHHHHHHhcccc----CcE
Q 016157 178 --------DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK----GSL 214 (394)
Q Consensus 178 --------~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~Lkp----GG~ 214 (394)
+.+|+||+ ..|--|.+.|.-.+.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36899886 3444555555556889999999987 776
No 314
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=76.63 E-value=1.9 Score=39.12 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~ 160 (394)
-.+|..|||.=||+|..+. ..-+.+.+|+|+++...++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4789999999999999753 3556689999999999999874
No 315
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=75.95 E-value=20 Score=33.97 Aligned_cols=97 Identities=15% Similarity=0.010 Sum_probs=52.3
Q ss_pred CCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC-CCC-CCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-LPY-RSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-lp~-~~~~fD~Vi~~~vl~ 190 (394)
.|.+||=+|=..-.-+. .....+|+.+|+.+.+++..++. .++....|+.+ +|- -.+.||+++.--.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy- 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY- 122 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S-
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC-
Confidence 57899999833322221 14556999999999999876543 46778888876 342 24899999984321
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.+-..-++.+....||..|...+..++.
T Consensus 123 ---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 123 ---TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp ---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred ---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 11225788999999999777444444443
No 316
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.59 E-value=3.2 Score=39.23 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=42.8
Q ss_pred CEEEEEcCccCcccc-------c-----CCCcEEEEEeCCHHHHHHHHHc--C---------CeEE-EeecCCCCCCCCC
Q 016157 124 SLVLDAGCGNGKYLG-------L-----NPDCFFVGCDISPSLIKICVDR--G---------HEVL-VADAVNLPYRSDF 179 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~-------~-----~~~~~v~gvD~S~~~l~~a~~~--~---------i~~~-~~D~~~lp~~~~~ 179 (394)
-+|+|+|.|+|.++. . .....++-+|+|+.+.+.-+++ + ..+. ..++.+.| .
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p----~ 95 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP----F 95 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----C
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----C
Confidence 589999999999742 1 1246999999999998877765 1 1111 22333333 4
Q ss_pred ccEEEehhhhhhcCC
Q 016157 180 GDAAISIAVLHHLST 194 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~ 194 (394)
.-+|+++.++..+|-
T Consensus 96 ~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 96 PGFIIANELFDALPV 110 (252)
T ss_dssp CEEEEEESSGGGS--
T ss_pred CEEEEEeeehhcCce
Confidence 568888889888875
No 317
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.52 E-value=4.6 Score=40.59 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHH
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~ 160 (394)
.+-..|+|+|.|.|.+.+ ..-+..|.|||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 344689999999999754 5778899999999887776654
No 318
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=74.26 E-value=5.3 Score=38.44 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=46.5
Q ss_pred EEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCC--CCCccEEEehh
Q 016157 125 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLPYR--SDFGDAAISIA 187 (394)
Q Consensus 125 ~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~--~~~fD~Vi~~~ 187 (394)
+++|+-||.|.+.. ...+. .+.++|+++.+++..+.+ .-.++.+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999998732 13345 578899999999988876 334678888886532 35699998854
No 319
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.19 E-value=14 Score=36.37 Aligned_cols=93 Identities=17% Similarity=0.333 Sum_probs=57.9
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----------C-CCCCcc-
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----------Y-RSDFGD- 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----------~-~~~~fD- 181 (394)
..+.+|.+||=+|+|. |..+ ....+..++++|.++.-++.+++.+.+.+. +..+.+ + ....+|
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTL-NPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEe-cCccccHHHHHHHHHhhcccCCCCC
Confidence 3567889999999854 3332 124466899999999999999887764332 111100 0 112244
Q ss_pred ---EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ---~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+-. ... ...+..+.++|++||++++.-.
T Consensus 241 ~~d~v~d~-----~g~----~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 241 TGWKIFEC-----SGS----KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred CcCEEEEC-----CCC----hHHHHHHHHHHhcCCeEEEECc
Confidence 44422 111 3467777889999999988753
No 320
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.45 E-value=18 Score=34.91 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecC-CCC-----CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAV-NLP-----YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~-~lp-----~~~~~fD~Vi~ 185 (394)
..+.+|.+||=.|.+ .|..+ ....+..+++++.+++-.+.+++.+.+.+.. +-. .+. ...+.+|+++-
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 456789999988853 44442 2255778999999999889888777643321 110 110 11245888876
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... ...+..+.++|++||++++..
T Consensus 214 ~~G----------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 214 NVG----------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCC----------HHHHHHHHHHhCcCcEEEEec
Confidence 422 134577889999999999764
No 321
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.24 E-value=10 Score=39.22 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-------CCCCCCCccE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-------LPYRSDFGDA 182 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-------lp~~~~~fD~ 182 (394)
..+..+|-+|-|.|.+.. ..+...++++++.+.|++.|.+. ...+...|... ..-.+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 445678888888888643 36778999999999999999876 12223333221 0113457888
Q ss_pred EEeh---hhhhhcCCh---hHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 183 AISI---AVLHHLSTE---SRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 183 Vi~~---~vl~hl~~~---~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
++.- .-.|.+..+ --...+|..+...|.|.|.++|-.-..++.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc
Confidence 8651 112323221 114678999999999999999987666543
No 322
>PRK11524 putative methyltransferase; Provisional
Probab=72.70 E-value=3.9 Score=39.51 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=39.1
Q ss_pred HHHHHcC-CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 113 VATFLNS-LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 113 l~~~l~~-l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
+..++.. -.+|..|||-=||+|..+. ..-+...+|+|++++.++.|++|
T Consensus 198 ~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 198 LKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 3444432 3689999999999999653 35677899999999999999988
No 323
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=72.67 E-value=2 Score=39.88 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=29.1
Q ss_pred CEEEEEcCccCccccc-----CCC-cEEEEEeCCHHHHHHHHHc
Q 016157 124 SLVLDAGCGNGKYLGL-----NPD-CFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~-----~~~-~~v~gvD~S~~~l~~a~~~ 161 (394)
-++.|-.||.|+++.. .+. ..|+|.|+++.+++.|+++
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 5899999999998632 222 3899999999999999976
No 324
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=72.14 E-value=5.6 Score=38.96 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=66.4
Q ss_pred CEEEEEcCccCcc-------c----c-c------------CCCcEEEEEeCCHHH--HHHHHHc----------------
Q 016157 124 SLVLDAGCGNGKY-------L----G-L------------NPDCFFVGCDISPSL--IKICVDR---------------- 161 (394)
Q Consensus 124 ~~VLDvGCG~G~~-------l----~-~------------~~~~~v~gvD~S~~~--l~~a~~~---------------- 161 (394)
.+||-||.|.|.- + . . .+...++.+|+.+-. +......
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999762 1 0 0 123589999998742 2221110
Q ss_pred --------CCeEEEeecCCCCCCC-------CCccEEEehhhhhhcCCh--hHHHHHHHHHHhccccCcEEEEEE
Q 016157 162 --------GHEVLVADAVNLPYRS-------DFGDAAISIAVLHHLSTE--SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 162 --------~i~~~~~D~~~lp~~~-------~~fD~Vi~~~vl~hl~~~--~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++.|.+.|++.+...+ ...++|+..+.++-+-.. ..-.++|..+-..++||-.|+|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 4689999998876322 357888888888765332 225788999999999998888875
No 325
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=71.91 E-value=21 Score=35.17 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeec-C-CCC-----CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICV-DRGHEVLVADA-V-NLP-----YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~-~-~lp-----~~~~~fD~Vi 184 (394)
..+.+|.+||=.|++ .|.++ ....+..+++++.++.-.+.++ +.+.+.+...- . ++. ...+.+|+++
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 356789999999984 44442 2245778999999998888886 45654332211 1 110 1123588888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-... ...+..+.++|++||++++.-
T Consensus 234 d~vG----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 234 DNVG----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ECCC----------HHHHHHHHHHhccCCEEEEEC
Confidence 6432 236677889999999998764
No 326
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=71.25 E-value=19 Score=34.91 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred HcCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeE-EEeecCCCC------CCCCCccEEEe
Q 016157 117 LNSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEV-LVADAVNLP------YRSDFGDAAIS 185 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~lp------~~~~~fD~Vi~ 185 (394)
...+.++.+||-.|+|. |..+ ....+..++++..+++..+.+++.+..- +...-..+. .....+|+++.
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 34577888999998753 3332 2255788999988998888887665322 211111100 12345899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
... -...+.++.+.|+++|+++...+.
T Consensus 234 ~~g---------~~~~~~~~~~~l~~~G~~i~~g~~ 260 (337)
T cd08261 234 ATG---------NPASMEEAVELVAHGGRVVLVGLS 260 (337)
T ss_pred CCC---------CHHHHHHHHHHHhcCCEEEEEcCC
Confidence 532 124578889999999998876543
No 327
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=70.62 E-value=4.4 Score=41.48 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=29.8
Q ss_pred CEEEEEcCccCccc--ccCC-CcEEEEEeCCHHHHHHHHHc
Q 016157 124 SLVLDAGCGNGKYL--GLNP-DCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 124 ~~VLDvGCG~G~~l--~~~~-~~~v~gvD~S~~~l~~a~~~ 161 (394)
..|||||.|||.+. .... .-.|++++.-..|.+.|++-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHH
Confidence 46899999999863 2222 33799999999999999874
No 328
>PRK13699 putative methylase; Provisional
Probab=70.50 E-value=6.9 Score=36.60 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHHHHHc-CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 112 KVATFLN-SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 112 ~l~~~l~-~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
-+..++. .-.+|..|||-=||+|..+. ..-+...+|+|+++...+.|.++
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 3444443 34688999999999999753 35567899999999999998877
No 329
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=69.25 E-value=22 Score=37.22 Aligned_cols=133 Identities=13% Similarity=0.180 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcccccc------ccccchHHHHHHHcC-----CCCCCEEEEEcCccCccccc--------CCCcEEEEE
Q 016157 88 KKYVHRVYDAIAPHFSS------TRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--------NPDCFFVGC 148 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~------~~~~~~~~l~~~l~~-----l~~g~~VLDvGCG~G~~l~~--------~~~~~v~gv 148 (394)
.+++.+.|+.....|-. ......+.+..++.. ..|+..|.|.-||+|.++.. .....++|.
T Consensus 172 ~d~lg~~ye~~~~k~a~e~~t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gq 251 (501)
T TIGR00497 172 IDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQ 251 (501)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEE
Confidence 35677777665544422 112233444444322 22567899999999998631 112468999
Q ss_pred eCCHHHHHHHHHc----CC-----eEEEeecCCCC-C-CCCCccEEEehhh--------------------hhhc-CC-h
Q 016157 149 DISPSLIKICVDR----GH-----EVLVADAVNLP-Y-RSDFGDAAISIAV--------------------LHHL-ST-E 195 (394)
Q Consensus 149 D~S~~~l~~a~~~----~i-----~~~~~D~~~lp-~-~~~~fD~Vi~~~v--------------------l~hl-~~-~ 195 (394)
+....+...|+.. ++ ....+|-..-| + ....||.|+++-- +.|+ +. .
T Consensus 252 e~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 331 (501)
T TIGR00497 252 EINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNS 331 (501)
T ss_pred eCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCc
Confidence 9999998888764 11 12233332221 1 2345787765431 1121 10 0
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..=..++..+..+|++||+..+...
T Consensus 332 ~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 332 KADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred hhhHHHHHHHHHhcCCCCeEEEEec
Confidence 1135788999999999999777654
No 330
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.86 E-value=21 Score=35.24 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=.|||. |.++ ....+. .|+++|.++.-++.+++.+.+.+. +..+.. .....+|+|+
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEE
Confidence 3567899999998753 2221 124566 599999999999999887764322 111111 1123589887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-... . ...+....+.|++||++++.-.
T Consensus 251 d~~g-----~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAVG-----R----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECCC-----C----HHHHHHHHHHhccCCEEEEECC
Confidence 6432 1 2456777889999999988754
No 331
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=68.63 E-value=17 Score=36.01 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=59.1
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-ecCCCC-----CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-----YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~lp-----~~~~~fD~Vi~~~ 187 (394)
.+.+|.+||=.|+|. |.++ ....+. .|+++|.++.-++.+++.+...+.. .-.++. ...+.+|+|+-..
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 467888898898752 2221 124566 6999999999999998877643221 111100 1123588888643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. . ...+....+.|+++|++++..
T Consensus 268 G-----~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 G-----S----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred C-----C----hHHHHHHHHHHhcCCEEEEEc
Confidence 2 1 246777888999999988764
No 332
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.57 E-value=23 Score=34.56 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred HcCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeE-EEeecCCC---------CCCCCCcc
Q 016157 117 LNSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEV-LVADAVNL---------PYRSDFGD 181 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l---------p~~~~~fD 181 (394)
...+.++.+||=.|+|. |..+ ....+.. +++++.++...+.+++.+... +..+-... ......+|
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 34577888888887653 2222 1245666 899999888888776665432 22111110 12234589
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+.... ....+..+.+.|+++|+++...+
T Consensus 237 ~vld~~g---------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 237 VVIECTG---------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EEEECCC---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 9987533 12367888999999999887654
No 333
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=68.46 E-value=20 Score=34.74 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=58.7
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEe-ecCC---C-CC-CCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVA-DAVN---L-PY-RSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~-D~~~---l-p~-~~~~fD~Vi~~ 186 (394)
..+.++.+||-.|+|. |..+ ....+.. +++++.++...+.+++.+...+.. .-.. + .. ....+|+++..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 4567888999998654 3332 1245665 999999988888876665432211 1110 0 11 12348999865
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. . ....+..+.++|+++|+++....
T Consensus 235 ~-----g----~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 235 A-----G----SPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred C-----C----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 2 1 13467888999999999887653
No 334
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.31 E-value=21 Score=35.10 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcCcc-Cccc----cc-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 120 LPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+.+|.+||=+|||. |.++ +. ..+..|+++|.++.-++.+++.+..... ..+. ....+|+|+-...- .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~---~~~~-~~~g~d~viD~~G~---~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI---DDIP-EDLAVDHAFECVGG---R 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh---hhhh-hccCCcEEEECCCC---C
Confidence 46789999999874 2222 22 2346899999999888888764432211 1111 11247888864431 0
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ....+....++|++||++++.-.
T Consensus 234 ~---~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 G---SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred c---cHHHHHHHHHhCcCCcEEEEEee
Confidence 0 13578888999999999988754
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.22 E-value=16 Score=35.43 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeE-EEeecCCC------CCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEV-LVADAVNL------PYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l------p~~~~~fD~Vi~ 185 (394)
..++++.+||-.|+|. |..+ ....+. .+++++.++...+.+++.+... +...-..+ ....+.+|+++.
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 4567888999877642 3332 123454 7889998888888877765322 22111111 012356898886
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... ....+.++.+.|+++|+++...
T Consensus 243 ~~g---------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG---------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 421 1246788889999999988664
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.11 E-value=14 Score=35.09 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----C-CCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-RSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~-~~~~fD~Vi~~~vl 189 (394)
.++.+||=+|+|. |..+ ....+.. |+++|.++.-++.+++.+...... ..... . ....+|+++-...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECCC-
Confidence 4788999998753 2121 1244664 899999999999998887643321 11110 0 1235888876432
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.+.|+|+|++++.-.
T Consensus 197 ----~----~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ----A----TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ----C----hHHHHHHHHHhcCCCEEEEecc
Confidence 1 3567888899999999988753
No 337
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=64.22 E-value=32 Score=33.46 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHH-cCCeEEEe-e-cCCC-----CCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVD-RGHEVLVA-D-AVNL-----PYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~-D-~~~l-----p~~~~~fD~Vi 184 (394)
..+.+|.+||=.|++ .|.++ ....+..+++++.+++-.+.+++ .+...+.. + -.++ ....+.+|+|+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 457789999988873 34442 22567789999999998888887 56543221 1 1011 01124688887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-... ...+.++.++|+++|+++...
T Consensus 227 d~~g----------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 227 DNVG----------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ECCC----------HHHHHHHHHHhccCcEEEEec
Confidence 6422 245778889999999998764
No 338
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.85 E-value=2.4 Score=43.85 Aligned_cols=97 Identities=21% Similarity=0.193 Sum_probs=67.8
Q ss_pred HHcCCCCCCEEEEEcCccCcc----cccCCCc-EEEEEeCCHHHHHHHHHc---C-----CeEEEeecCCC----CCCCC
Q 016157 116 FLNSLPSGSLVLDAGCGNGKY----LGLNPDC-FFVGCDISPSLIKICVDR---G-----HEVLVADAVNL----PYRSD 178 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~----l~~~~~~-~v~gvD~S~~~l~~a~~~---~-----i~~~~~D~~~l----p~~~~ 178 (394)
....-..+-+|||.=|++|.- +...+++ +|++-|.++..+...+++ | ++..+.|+..+ +-...
T Consensus 103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred hhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccc
Confidence 333445567899999999974 3335555 899999999999977765 2 33455555432 22357
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|-.-- +.+ +..+|..+.+.++.||.|+++.
T Consensus 183 ~FDvIDLDP----yGs---~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 183 FFDVIDLDP----YGS---PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ccceEecCC----CCC---ccHHHHHHHHHhhcCCEEEEEe
Confidence 899886421 122 5688999999999999999985
No 339
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=63.28 E-value=23 Score=38.03 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred CEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCCh
Q 016157 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
..|+=+|+|. |..+. ...+..++.+|.+++.++.+++.+..++.+|+.+.. ..-+..|++++.. +++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~-----~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC-----NEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe-----CCH
Confidence 4677677664 33221 145779999999999999999999999999998743 1234677777642 333
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+ ....+-...|.+.|...++.-....
T Consensus 476 ~-~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 476 E-DTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 3 3334555667788888888776544
No 340
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=62.87 E-value=28 Score=33.82 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCC-----C-CC-CCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L-PY-RSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----l-p~-~~~~fD~Vi~~ 186 (394)
.+.+|.+||=+|+|. |.++ ....+.. ++++|.++.-++.+++.+...+.. ..+ + .. ....+|+|+-.
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVIN-SGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEc-CCcchHHHHHHHhCCCCCCEEEEC
Confidence 456788999898752 1121 1245666 999999999999988777543321 111 1 01 12368998864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. -...+....+.|+++|++++...
T Consensus 239 ~g---------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG---------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC---------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 32 13456777889999999987654
No 341
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=62.46 E-value=40 Score=32.39 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCccCc-cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..+.++.+||=.|||.=. .+ ....+..+++++.+..-.+.+++.++.... +.... ....+|+++....
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~--~~~~vD~vi~~~~----- 234 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAG-DSDDL--PPEPLDAAIIFAP----- 234 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEe-ccCcc--CCCcccEEEEcCC-----
Confidence 456778788878765211 11 125668999999999888888766654322 11221 2345788775321
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+.++.+.|+++|++++..
T Consensus 235 ----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ----cHHHHHHHHHHhhcCCEEEEEc
Confidence 1346888999999999998653
No 342
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=62.00 E-value=49 Score=31.52 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=63.6
Q ss_pred CEEEEEcCccCccc-cc--CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCC-C-------CCCCCCccE
Q 016157 124 SLVLDAGCGNGKYL-GL--NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVN-L-------PYRSDFGDA 182 (394)
Q Consensus 124 ~~VLDvGCG~G~~l-~~--~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~-l-------p~~~~~fD~ 182 (394)
..|+.+|||--.-. +. .++..++=+|.-.- ++.-++. +..++.+|+.. + .+..+.--+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v-~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAV-LAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHH-HHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 47999999975432 22 23456666776442 2221111 45677788752 1 132344557
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++-+++.+++..+ ...+|+.+.+...||+.+++.....
T Consensus 162 ~i~EGvl~YL~~~~-v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 162 WLWEGLLMYLTEEA-VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeecchhhcCCHHH-HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 88888999998755 7889999999888999988876543
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=61.21 E-value=36 Score=33.22 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEcCccCc-cc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCcc-EEE
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGD-AAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD-~Vi 184 (394)
..+.+|.+||=.|+|.=. ++ ....+.. ++++|.++.-++.+++.+...+. |..... .....+| +|+
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTF-NSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEe-cCcccCHHHHHHHhcCCCCCeEEE
Confidence 345678899999875422 21 1244664 78999999999888777653321 111100 1123566 555
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-... -...+.+..+.|++||++++.-.
T Consensus 235 d~~G---------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 ETAG---------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ECCC---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 4221 13577888899999999888753
No 344
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=61.16 E-value=54 Score=31.37 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~ 185 (394)
..+.+|.+||=.|.+ .|..+ ....+..+++++.+++-.+.+++.+.+.+. |..... .....+|+|+.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVF-NYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHCCCCcEEEEE
Confidence 346788899988853 34332 124577899999999988988887764322 211111 11245888876
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... ...+..+.+.|+++|+++...
T Consensus 218 ~~g----------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NVG----------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCC----------HHHHHHHHHhhccCCEEEEEc
Confidence 432 245688899999999988763
No 345
>PLN02740 Alcohol dehydrogenase-like
Probab=60.48 E-value=38 Score=33.78 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC----C-----CCCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----l-----p~~~~~fD~V 183 (394)
..+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.+...+. |..+ + ....+.+|+|
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI-NPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEE
Confidence 4577899999999753 1121 124566 699999999999999887764322 1111 0 0112258988
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
+-... . ...+......+++| |++++.-.
T Consensus 273 id~~G-----~----~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 273 FECAG-----N----VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EECCC-----C----hHHHHHHHHhhhcCCCEEEEEcc
Confidence 87543 1 34677777888897 99877643
No 346
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=60.17 E-value=54 Score=31.80 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcCc-cCccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEee-cCCC------CCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG-NGKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVAD-AVNL------PYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG-~G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D-~~~l------p~~~~~fD~Vi~ 185 (394)
..+.+|.+||-.|+| .|..+ ....+.. +++++.++.-.+.+++.++..+... -.++ ......+|+++.
T Consensus 157 ~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld 236 (340)
T TIGR00692 157 AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLE 236 (340)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEE
Confidence 345677788777764 12222 1245665 8888888888888877765432211 1111 012346899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ....+.++.+.|+++|+++....
T Consensus 237 ~~g---------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 237 MSG---------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCC---------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 521 13567888999999999876643
No 347
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=59.66 E-value=11 Score=37.83 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCCEEEEEcCccCcccc--------cC----CCcEEEEEeCCHHHHHHHHHc
Q 016157 122 SGSLVLDAGCGNGKYLG--------LN----PDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--------~~----~~~~v~gvD~S~~~l~~a~~~ 161 (394)
....++|+|.|+|.++. .. ....+.-|++|+++.+.-++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34579999999999742 23 356899999999998776654
No 348
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.30 E-value=53 Score=31.89 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEE-eecCCCC-----CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLV-ADAVNLP-----YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~lp-----~~~~~fD~Vi~~~ 187 (394)
...++.+||-.|+|. |..+ ....+. .+++++.++.-...+++.+...+. ..-.+.. ...+.+|+++...
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECC
Confidence 345777888777643 2222 124456 688888888877777776653221 1111110 1234688888643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. . ...+.++.++|+++|+++...
T Consensus 240 g-----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 G-----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred C-----C----HHHHHHHHHHhccCCEEEEEc
Confidence 2 1 345777889999999987764
No 349
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=58.75 E-value=21 Score=33.90 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHcCCeEEEee-cCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 140 NPDCFFVGCDISPSLIKICVDRGHEVLVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 140 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D-~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
.+...|+|+|.++..++.|.+.|+-....+ ...+ ..+|+|+..--+.. ...+|+++...+++|+.+.
T Consensus 9 g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~~~------~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 9 GPDVEVYGYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPVSA------IEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp TTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-HHH------HHHHHHHHHCGS-TTSEEE
T ss_pred CCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCHHH------HHHHHHHhhhhcCCCcEEE
Confidence 456899999999999999988875332222 2211 34599998765543 4678999999898876544
No 350
>PLN02827 Alcohol dehydrogenase-like
Probab=57.77 E-value=35 Score=34.08 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCC--C-------CCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL--P-------YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l--p-------~~~~~fD~V 183 (394)
..+.+|.+||=+|+|. |.++ ....+. .++++|.++.-++.|++.+...+. +..+. + ...+.+|+|
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 267 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI-NPNDLSEPIQQVIKRMTGGGADYS 267 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-cccccchHHHHHHHHHhCCCCCEE
Confidence 3567899999998753 1121 124455 689999999999999887764332 11110 0 112258888
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~ 219 (394)
+-... . ...+....+.|++| |++++.-
T Consensus 268 id~~G-----~----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 268 FECVG-----D----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EECCC-----C----hHHHHHHHHhhccCCCEEEEEC
Confidence 76433 1 24567788889999 9998753
No 351
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=57.60 E-value=3 Score=36.46 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=40.9
Q ss_pred CEEEEEcCccCccc---c-cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CCC---CCCCccEEEehhhhhhcCCh
Q 016157 124 SLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY---RSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 124 ~~VLDvGCG~G~~l---~-~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp~---~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.-|||+|=|+|+.. + ..|+..|+.+|..-..-..+.--.-.++++|+.+ +|. -....-++.+-...++-...
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d 109 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEKD 109 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchh
Confidence 57999999999853 2 4788899999975432221211123567777654 221 11222222222222211110
Q ss_pred -hHHHHHHHHHHhccccCcEEEEE
Q 016157 196 -SRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 196 -~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.....+=.-|..+|.|||.++-.
T Consensus 110 ~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 110 DATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHHHHhhhHHHHHHhcCCcEEEeC
Confidence 10122233466789999987654
No 352
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.61 E-value=20 Score=38.89 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=33.6
Q ss_pred eEEEeecCC-CCCCCCCccEEEehhhhhhcCChhH-HHHHHHHHHhccccCcEEEEEE
Q 016157 164 EVLVADAVN-LPYRSDFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 164 ~~~~~D~~~-lp~~~~~fD~Vi~~~vl~hl~~~~~-~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++..+|+.+ ++--...||+++.-..=-. .+++. -..+++.|.|+++|||++.-++
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 355667654 2211246899887432110 01110 2689999999999999988665
No 353
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=55.99 E-value=7.5 Score=41.43 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC----CC----CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN----LP----YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----lp----~~~~~fD~Vi 184 (394)
..+.++..|||+||.+|.++.. ..+.-|+|+|+-+--.- .++..++.|+.. .+ ...-..|+|+
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~----~~c~t~v~dIttd~cr~~l~k~l~t~~advVL 115 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPI----PNCDTLVEDITTDECRSKLRKILKTWKADVVL 115 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccC----CccchhhhhhhHHHHHHHHHHHHHhCCCcEEe
Confidence 4577889999999999998752 45668999998652100 022222222221 11 1112235554
Q ss_pred ehh--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~--------vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.-+ +-..+........+|+-+...|+.||.|+--++-.++
T Consensus 116 hDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~d 163 (780)
T KOG1098|consen 116 HDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSED 163 (780)
T ss_pred ecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCc
Confidence 421 1111222222456777788889999997766665444
No 354
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=55.91 E-value=29 Score=33.52 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.++.++|=+|||. |.++ ....++. ++++|.++..++.|.... ++ |.... ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i--~~~~~--~~~g~Dvvid~~G------- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VL--DPEKD--PRRDYRAIYDASG------- 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--cc--Chhhc--cCCCCCEEEECCC-------
Confidence 3567888888763 3332 1234554 778899888877776431 11 11111 1345898887543
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-...+..+.+.|++||++++.-.
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 13467888899999999998754
No 355
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=55.36 E-value=19 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCeeEecccccccchHHHHHhcccCCcEEEEeeeccCCeEEE
Q 016157 348 GAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIV 389 (394)
Q Consensus 348 ~~~~~~RyyH~F~~gELe~l~~~~~~~~i~~~~~d~~Nwcvi 389 (394)
++.+.-=+-|=|+..+++.|++++| ++++..+.|.+.|+.+
T Consensus 85 GE~I~~e~S~Ky~~~~~~~l~~~aG-l~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 85 GERIHTENSYKYSPEEFEALAEQAG-LEVEKRWTDPKGDFSL 125 (127)
T ss_pred CCEEEEEEeeCcCHHHHHHHHHHCC-CeeEEEEECCCCCeEE
Confidence 4556777788999999999999986 9999999999999543
No 356
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=54.57 E-value=54 Score=31.34 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..+.++.+||=.|+|. |..+ ....+..+++++.+++..+.+++.+...... .... .....+|+++....
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~-~~~~~~d~vid~~g----- 223 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLP-DEAE-SEGGGFDVVVEATG----- 223 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeC-cccc-ccCCCCCEEEECCC-----
Confidence 3567788998887542 1111 1255778999999999999988876543221 1111 23456899987531
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-...+..+.+.|+++|++++.
T Consensus 224 ----~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 ----SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----ChHHHHHHHHHhhcCCEEEEE
Confidence 134677788899999999973
No 357
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.01 E-value=63 Score=31.51 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..++++.+||=.|+|. |..+ ....+. .++++|.++..++.+++.+...+. +..... .....+|+++
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV-DYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEe-cCCCCCHHHHHHHHhCCCCCcEEE
Confidence 3567888999888652 2221 124455 699999999988888887754322 111111 1224589888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.... ....+.++.++|+++|+++...
T Consensus 241 d~~g---------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAGG---------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECCC---------CHHHHHHHHHHhhcCCEEEEec
Confidence 5322 1346788899999999988764
No 358
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=53.31 E-value=94 Score=29.26 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred cCCCCCCEEEEEcCcc--Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-----CCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~--G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----p~~~~~fD~Vi~~~ 187 (394)
..+.+|.+||=.|++. |..+ ....+..++++..++.-.+.+++.++..+..+-.++ .+ ...+|+++...
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~ 216 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELV 216 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECC
Confidence 3467788999888743 3332 125677899999999888888777764433221111 12 35688887643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...+.++.+.|+++|+++..-
T Consensus 217 ~----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 217 G----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred C----------hHHHHHHHHHhccCCEEEEEc
Confidence 2 235778889999999987764
No 359
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=51.34 E-value=51 Score=29.23 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=42.4
Q ss_pred HcCCeEE-EeecCCCC----CCCCCccEEEehhhhhhcC------------ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 160 DRGHEVL-VADAVNLP----YRSDFGDAAISIAVLHHLS------------TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 160 ~~~i~~~-~~D~~~lp----~~~~~fD~Vi~~~vl~hl~------------~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.|+.++ -.|+..+. .....||.|+-++- |.. ..+-...+++.+..+|+++|.+.|+....
T Consensus 51 ~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 51 ELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred hcCCccccCCCCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3355543 44776654 25688999998653 322 11226788999999999999999997654
Q ss_pred c
Q 016157 223 E 223 (394)
Q Consensus 223 ~ 223 (394)
.
T Consensus 129 ~ 129 (166)
T PF10354_consen 129 Q 129 (166)
T ss_pred C
Confidence 3
No 360
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=51.25 E-value=43 Score=34.22 Aligned_cols=87 Identities=23% Similarity=0.246 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.-.|.+|+=+|+|. |..+. ...+.+|+++|.++.-...|...+..+. +..+. . ...|+|+....
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~--~leea-l--~~aDVVItaTG------- 259 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM--TMEEA-A--KIGDIFITATG------- 259 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC--CHHHH-H--hcCCEEEECCC-------
Confidence 45789999999997 33221 2456789999998866555655565443 22221 1 34699877432
Q ss_pred hHHHHHHH-HHHhccccCcEEEEEEc
Q 016157 196 SRRKKAIE-ELVRVVKKGSLVLITVW 220 (394)
Q Consensus 196 ~~~~~~L~-ei~r~LkpGG~lli~~~ 220 (394)
....+. +....+|+|++++...-
T Consensus 260 --~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 260 --NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred --CHHHHHHHHHhcCCCCcEEEEECC
Confidence 134444 47889999998887643
No 361
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=50.68 E-value=38 Score=34.89 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCccCc-cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 120 LPSGSLVLDAGCGNGK-YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~-~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.-.|.+|+=+|+|.=. .+ ....+.+|+.+|+++.....+...+.++. ++.++ -..+|+|+.... +
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~l~ea---l~~aDVVI~aTG-----~- 277 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM--TMEEA---AELGDIFVTATG-----N- 277 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec--CHHHH---HhCCCEEEECCC-----C-
Confidence 3478899999998522 21 12456799999999876655555565533 22222 135799987532 1
Q ss_pred hHHHHHHH-HHHhccccCcEEEEEE
Q 016157 196 SRRKKAIE-ELVRVVKKGSLVLITV 219 (394)
Q Consensus 196 ~~~~~~L~-ei~r~LkpGG~lli~~ 219 (394)
..++. +....+|+|++++...
T Consensus 278 ---~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 278 ---KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---HHHHHHHHHhcCCCCCEEEEcC
Confidence 23454 6888999999877764
No 362
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=50.66 E-value=97 Score=31.26 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCCCCCEEEEEcC-c-cCcccc---cCC--C-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC---CC-----
Q 016157 119 SLPSGSLVLDAGC-G-NGKYLG---LNP--D-CFFVGCDISPSLIKICVDR--------GHEVLVADAVN---LP----- 174 (394)
Q Consensus 119 ~l~~g~~VLDvGC-G-~G~~l~---~~~--~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~---lp----- 174 (394)
.+.+|.+||=+|+ | -|.++. ... + ..|+++|.++.-++.+++. +......|..+ +.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 4678889998874 4 344321 122 2 2799999999999999885 43322222211 10
Q ss_pred -CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 175 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 175 -~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.....+|+++.... . ...+....+.|+++|.+++..
T Consensus 252 ~t~g~g~D~vid~~g-----~----~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 252 LTGGQGFDDVFVFVP-----V----PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HhCCCCCCEEEEcCC-----C----HHHHHHHHHHhccCCeEEEEE
Confidence 11235888876422 1 346777889999998776643
No 363
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=50.08 E-value=69 Score=31.74 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC--CC-------CCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--lp-------~~~~~fD~V 183 (394)
..+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.+..... |..+ -+ ...+.+|++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCV-NPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEE-cccccchhHHHHHHHHhCCCCCEE
Confidence 3567889999999863 2221 124566 799999999999999887764322 1111 00 112257888
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
+-... . ...+....+.|++| |++++...
T Consensus 260 id~~G-----~----~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 260 FECIG-----N----VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EECCC-----C----HHHHHHHHHHhhcCCCeEEEEec
Confidence 76432 1 34677778899886 99887654
No 364
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.22 E-value=88 Score=30.59 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=56.5
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEE-eecCCCC---------CCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLV-ADAVNLP---------YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~lp---------~~~~~fD~V 183 (394)
.+.++.+||=.|+|. |..+ ....+. .+++++.++.-...+++.++..+. .+-...+ .....+|++
T Consensus 174 ~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 174 PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence 344788888888642 1111 124567 899999999888888776654322 1111110 112458988
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.... ....+....+.|+++|++++..
T Consensus 254 id~~g---------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 254 IEASG---------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EECCC---------ChHHHHHHHHHhccCCEEEEEc
Confidence 86421 1245677889999999998764
No 365
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=48.64 E-value=70 Score=31.48 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCCCCEEEEEcCc-cCccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEE-EeecCCC------CCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCG-NGKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVL-VADAVNL------PYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG-~G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~-~~D~~~l------p~~~~~fD~Vi~~ 186 (394)
.+.++.+||=.|+| .|..+ ....+.. +++++.++...+.+++.++..+ ..+-..+ ......+|+|+..
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~ 263 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA 263 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe
Confidence 44677888866654 22221 1234565 9999999988888876665332 2211111 0123568988864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. .. ...+.++.++|+++|+++....
T Consensus 264 v-----g~----~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 264 L-----GK----PETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred C-----CC----HHHHHHHHHHHhcCCEEEEEcc
Confidence 2 22 1367788899999999887753
No 366
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=47.98 E-value=57 Score=35.28 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=63.5
Q ss_pred CEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCCh
Q 016157 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.+|+=+|||. |+.+. ...+..++.+|.+++.++.+++.+..++.+|..+.. ..-+..|++++.. .++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~-----~d~ 475 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI-----DDP 475 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----CCH
Confidence 5788888885 44332 245678999999999999999889999999998854 1224677777642 333
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ ....+-...|.+.|.-.++.-...
T Consensus 476 ~-~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 476 Q-TSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred H-HHHHHHHHHHHhCCCCeEEEEECC
Confidence 3 344455566667787776665533
No 367
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=47.66 E-value=71 Score=31.58 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCC---------CCCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL---------PYRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l---------p~~~~~fD~V 183 (394)
..+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.+.+.+. |..+. ....+.+|+|
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 260 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCV-NPKDHDKPIQQVLVEMTDGGVDYT 260 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEE-cccccchHHHHHHHHHhCCCCcEE
Confidence 3467889999998752 1121 124566 799999999999999877654322 11110 0112358888
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
+-... . ...+....+.|+++ |++++...
T Consensus 261 id~~g-----~----~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 261 FECIG-----N----VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EECCC-----C----hHHHHHHHHhhccCCCeEEEEcc
Confidence 76422 1 34677788899997 99887653
No 368
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.61 E-value=1.1e+02 Score=29.52 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcCcc--Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC----C-CCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----P-YRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~--G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l----p-~~~~~fD~Vi~~~ 187 (394)
..+.++.+||=.|+.. |..+ ....++.+++++.+. ..+.+++.++..+...-... . .....+|+++...
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 251 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVV 251 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecC
Confidence 3567889999999832 3332 125567888888665 67777666765332211110 0 1234589888653
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...+..+.+.|+++|+++...
T Consensus 252 g----------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 252 G----------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred C----------HHHHHHHHHHhccCCEEEEec
Confidence 2 124677889999999988653
No 369
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=47.60 E-value=69 Score=30.95 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..+.+|....|+|..+|.++- ...+..|+++|-.+= ....... .++....|...........|-.+|-.| ..
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~m-a~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----Ek 281 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPM-AQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----EK 281 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcceEEEEeccchh-hhhhhcccceeeeeccCcccccCCCCCceEEeehh----cC
Confidence 357799999999999999764 367789999997543 2222222 466677777765444567898888765 22
Q ss_pred hhHHHHHHHHHHhccccC
Q 016157 195 ESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpG 212 (394)
+.++-.-|...|..|
T Consensus 282 ---P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 ---PARVAALIAKWLVNG 296 (358)
T ss_pred ---cHHHHHHHHHHHHcc
Confidence 455555566665543
No 370
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=46.95 E-value=59 Score=32.01 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEEcCc-cCccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEe-ecCCC-----C-CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG-NGKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVA-DAVNL-----P-YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG-~G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----p-~~~~~fD~Vi~ 185 (394)
..+.++.+||-.|+| .|..+ ....+.. +++++.++...+.+++.++..+.. .-... . .....+|+++.
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 346778889888774 23322 1245664 999999998888887666533221 11110 0 11345898875
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ....+..+.+.|+++|+++....
T Consensus 258 ~~~---------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 258 AVG---------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred cCC---------ChHHHHHHHHHhhcCCeEEEEec
Confidence 431 13467888999999999987653
No 371
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=46.84 E-value=27 Score=34.44 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=58.7
Q ss_pred CEEEEEcCccCcc-c---ccCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGNGKY-L---GLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~G~~-l---~~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.+|.=||-|.=.. + ...-+.+|+-+|+|..-++..... .+.....+..++...-...|++|..-.+---..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-- 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-- 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC--
Confidence 3566676664322 2 135678999999998877766544 234444444444322356799887655544444
Q ss_pred HHHHHHHHHHhccccCcEEE
Q 016157 197 RRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~ll 216 (394)
|.-..+++...+|||+.++
T Consensus 247 -PkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 247 -PKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -ceehhHHHHHhcCCCcEEE
Confidence 7888999999999997755
No 372
>PLN02494 adenosylhomocysteinase
Probab=46.36 E-value=44 Score=34.84 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=63.9
Q ss_pred cccchHHHHHHHcCCCCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCcc
Q 016157 106 RFAKWPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 106 ~~~~~~~l~~~l~~l~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD 181 (394)
++..|..+.......-.|.+|+=+|+|. |..+. ..-+..|+++|+++.-...|...+..+. ++.+. . ...|
T Consensus 237 gqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~leEa-l--~~AD 311 (477)
T PLN02494 237 RHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--TLEDV-V--SEAD 311 (477)
T ss_pred cccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--cHHHH-H--hhCC
Confidence 3445555665555556789999999995 32211 2446789999999865555655566543 22221 1 3469
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+....- ...+..+....+|+||+++...-
T Consensus 312 VVI~tTGt--------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGN--------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCC--------ccchHHHHHhcCCCCCEEEEcCC
Confidence 99873221 22234778889999999888743
No 373
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=45.94 E-value=50 Score=32.10 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=54.7
Q ss_pred CCCEEEEEcCccCcc-c-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhH
Q 016157 122 SGSLVLDAGCGNGKY-L-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~-l-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
.+.+++=+|.|.-.. + . ...+..|+.+|.++...+.++..+..+.. ..++.-.-..+|+|+... +.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~--~~~l~~~l~~aDiVI~t~-----p~--- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFH--LSELAEEVGKIDIIFNTI-----PA--- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeec--HHHHHHHhCCCCEEEECC-----Ch---
Confidence 478999999985322 1 1 24567999999998877777776765432 222221124689999853 21
Q ss_pred HHHHHHHHHhccccCcEEEEEE
Q 016157 198 RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...-+++.+.++||+.++-..
T Consensus 221 -~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred -hhhhHHHHHcCCCCcEEEEEc
Confidence 223456778889987655443
No 374
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=45.33 E-value=90 Score=30.78 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC--C-------CCCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--L-------PYRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l-------p~~~~~fD~V 183 (394)
..+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.+...+. +..+ . ......+|+|
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~g~d~v 258 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFI-NPKDSDKPVSEVIREMTGGGVDYS 258 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEe-ccccccchHHHHHHHHhCCCCCEE
Confidence 3467889999888752 2221 124566 799999999999998877653221 1111 0 0112358888
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
+-... . ...+..+.+.|+++ |++++...
T Consensus 259 id~~g-----~----~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 259 FECTG-----N----ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EECCC-----C----hHHHHHHHHhcccCCCEEEEEcC
Confidence 85422 1 34677788899886 99887653
No 375
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=44.91 E-value=27 Score=35.38 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeecCCCCC---C
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPY---R 176 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~lp~---~ 176 (394)
+.++....|+|.|-|..... .....-+|+++....-+.|... .++.+++++.+-.. -
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 57788999999999997432 2233567777766544444322 25677777765321 1
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....++|+++.+.- +++ ...-+.++..-+++|-+++-.-
T Consensus 270 ~~eatvi~vNN~~F---dp~-L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF---DPE-LKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred hhcceEEEEecccC---CHH-HHHhhHHHHhhCCCcceEeccc
Confidence 34568888877632 223 4555669999999998877654
No 376
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=44.81 E-value=1.3e+02 Score=28.11 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCCC------CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP------YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~lp------~~~~~fD~Vi~ 185 (394)
..+.++..||-.||. .|..+ ....+..+++++.+....+.+++.++..... +..+.. .....+|+++.
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~ 214 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYD 214 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEE
Confidence 456778899999983 23332 1255678999999998888887666432221 111110 12245888876
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ...+..+.+.++++|+++....
T Consensus 215 ~~g----------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 215 PVG----------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred Ccc----------HHHHHHHHHhhccCCEEEEEcc
Confidence 432 1245567788999999887653
No 377
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=44.50 E-value=1.5e+02 Score=28.69 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCCCC--CEEEEEcCc--cCccc---ccCCCc-EEEEEeCCHHHHHHHHH-cCCeEEEeec-CCCC-----CCCCCccEE
Q 016157 119 SLPSG--SLVLDAGCG--NGKYL---GLNPDC-FFVGCDISPSLIKICVD-RGHEVLVADA-VNLP-----YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g--~~VLDvGCG--~G~~l---~~~~~~-~v~gvD~S~~~l~~a~~-~~i~~~~~D~-~~lp-----~~~~~fD~V 183 (394)
.+.+| .+||=.|++ .|..+ ....+. .|++++.+++-.+.+++ .+.+.+...- .++. ...+.+|+|
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 35555 789988863 44442 124566 79999999988888776 5654322111 1110 112458988
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.... . ..+.++.++|+++|+++...
T Consensus 229 id~~g-----~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c-----HHHHHHHHHhccCCEEEEEe
Confidence 86432 1 23577889999999998764
No 378
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=44.39 E-value=66 Score=31.83 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHH-HHHHHHcCCeEEEee--cCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSL-IKICVDRGHEVLVAD--AVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~-l~~a~~~~i~~~~~D--~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.+|.+||=.|+|. |.++ ....+..+++++.+..- ...+++.+...+... ...+.-..+.+|+++-...
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---- 256 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---- 256 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC----
Confidence 46788888898863 2222 12456788888877654 344555565433211 0011000124788876432
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...+.++.++|++||++++..
T Consensus 257 -~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -C----HHHHHHHHHHhcCCcEEEEeC
Confidence 1 246778889999999988764
No 379
>PRK06182 short chain dehydrogenase; Validated
Probab=44.39 E-value=1.1e+02 Score=28.50 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred CCEEEEEcCccCcc--c-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----C-----CCCCccEEEehh
Q 016157 123 GSLVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-----RSDFGDAAISIA 187 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~-----~~~~fD~Vi~~~ 187 (394)
+..+|=.|++.|.- + . ...+.+|++++.+..-++.....++.++.+|+.+.. + ..+..|+++.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45788888766542 1 1 256789999999988776555557889999987742 1 124679999887
Q ss_pred hhhh
Q 016157 188 VLHH 191 (394)
Q Consensus 188 vl~h 191 (394)
.+..
T Consensus 83 g~~~ 86 (273)
T PRK06182 83 GYGS 86 (273)
T ss_pred CcCC
Confidence 6543
No 380
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=43.96 E-value=1.5e+02 Score=28.78 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=59.0
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=.|+|. |.++ ....+. .|++++.++.-.+.+++.+...+. |..+.. ...+.+|+++
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVL-DPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCccCHHHHHHHHhCCCCCCEEE
Confidence 3567788888888642 1111 124566 899999999988888776654332 211111 1123489988
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-... ....+..+.+.|+++|+++....
T Consensus 247 d~~g---------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAG---------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCC---------CHHHHHHHHHhccCCCEEEEEcc
Confidence 6532 12467788899999999887654
No 381
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=43.69 E-value=1.5e+02 Score=28.10 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred cCCCCCCEEEEEcCccCc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~--~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.++.+||=.|.+.|. .+ ....+..++.++.++.-.+.++..+.... .+..+.. .....+|+++
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYV-IDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeE-EecCChHHHHHHHHHhCCCCCcEEE
Confidence 356678899988886543 22 12456789999999887777765544322 1222111 1124588888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..... ..+..+.+.|+++|+++...
T Consensus 241 ~~~g~----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVGA----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCcH----------HHHHHHHHHhhcCCEEEEEe
Confidence 75431 24566778899999988764
No 382
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=42.70 E-value=70 Score=31.99 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHH-HHHHHHcCCeEEEeec--CCCCCCCCCccEEEehhhhhhcC
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSL-IKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~-l~~a~~~~i~~~~~D~--~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
.+|.+||=.|+|. |.++ ....+..++++|.+.+. .+.+++.+.+.+...- ..+.-..+.+|+++-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G----- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS----- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC-----
Confidence 5788899888752 2221 12456789999987554 6667666664332110 000000124788876432
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....+..+.+.|++||+++..-.
T Consensus 252 ----~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----cHHHHHHHHHhhcCCCEEEEEcc
Confidence 13467788899999999987643
No 383
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.42 E-value=1.3e+02 Score=27.14 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=58.7
Q ss_pred CCCEEEEEcCccCcc--c-c--cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC-----C-----CCCCcc
Q 016157 122 SGSLVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-----Y-----RSDFGD 181 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~--l-~--~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp-----~-----~~~~fD 181 (394)
.+.+||=.|++.|.- + + ...+..|++++.++.-+....+. ++.++.+|+.+.. + .-+..|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 356899999876542 1 1 25678999999988765444221 4678888887632 0 013468
Q ss_pred EEEehhhhhhcCChh--------------HHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTES--------------RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~--------------~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.++............ -...+++.+...++++|.+++..-
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 777665421110000 023446666677778888777653
No 384
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.36 E-value=77 Score=33.64 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=58.5
Q ss_pred CEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCCh
Q 016157 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
..++=+|||. |+.+. ...+..++.+|.+++.++.+++.+...+.+|..+.. ..-+..|.++..- +++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~-----~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTI-----PNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc-----CCh
Confidence 4677788775 33222 145679999999999999999889999999998742 2235678665431 222
Q ss_pred hHHHHHHHHHHhccccCcEEEEEE
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ....+-...|.+.|.-.++.-+
T Consensus 493 ~-~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 493 Y-EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEE
Confidence 2 1222333455567777766654
No 385
>PRK08324 short chain dehydrogenase; Validated
Probab=42.09 E-value=79 Score=34.49 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=60.3
Q ss_pred CCCEEEEEcCccCc--ccc---cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC-----CC-----CCCcc
Q 016157 122 SGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-----YR-----SDFGD 181 (394)
Q Consensus 122 ~g~~VLDvGCG~G~--~l~---~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp-----~~-----~~~fD 181 (394)
+|..+|=.|++.|. .+. ...+..|+.+|.+...++.+.+. ++.++.+|+.+.. +. .+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45789999975543 221 24577999999998776655443 5677888887632 10 14689
Q ss_pred EEEehhhhhhcCC-----hhH-----------HHHHHHHHHhcccc---CcEEEEEE
Q 016157 182 AAISIAVLHHLST-----ESR-----------RKKAIEELVRVVKK---GSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~-----~~~-----------~~~~L~ei~r~Lkp---GG~lli~~ 219 (394)
+|+.+..+-.... .+. ...+++.+.+.+++ ||.+++..
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 9998876432211 000 23456666777766 67777654
No 386
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=41.66 E-value=20 Score=32.35 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccccCcEEEEEEcC
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
....+.++.|+|||||.+++..-.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 578899999999999999887643
No 387
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=41.34 E-value=1.7e+02 Score=28.00 Aligned_cols=95 Identities=17% Similarity=0.280 Sum_probs=58.2
Q ss_pred HcCCCCCCEEEEEcCcc-Cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeec--CCCC--C--CCCCccEEEe
Q 016157 117 LNSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADA--VNLP--Y--RSDFGDAAIS 185 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~-G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~--~~lp--~--~~~~fD~Vi~ 185 (394)
...+.++.+||=.|+|. |..+ ....+..+++++.+++-.+.+++.+++.+...- .... + ..+.+|.++.
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~ 236 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVV 236 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEE
Confidence 34577889999998542 1221 112478999999999999999777764432211 1100 0 0123674432
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. . . ...+..+.+.|+++|+++....
T Consensus 237 ~~----~-~----~~~~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 237 TA----V-A----KAAFNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred eC----C-C----HHHHHHHHHhccCCCEEEEEee
Confidence 21 1 1 3568888999999999887653
No 388
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.29 E-value=28 Score=33.98 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCc
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+..+|..+..+|+|||++++.+|..
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 7889999999999999999998754
No 389
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.22 E-value=1.6e+02 Score=27.67 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcc--Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 122 SGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 122 ~g~~VLDvGCG~--G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
++..||=.|++. |..+ ....+..+++++.+++-++.+++.++.....+..++ ..+.+|+++.... .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~vl~~~g-----~-- 202 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSEL--SGAPVDLVVDSVG-----G-- 202 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccc--cCCCceEEEECCC-----c--
Confidence 488898888843 3332 124567899999999888888877654222222222 2246888886421 1
Q ss_pred HHHHHHHHHHhccccCcEEEEEEc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+..+.+.|+++|+++....
T Consensus 203 ---~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 203 ---PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred ---HHHHHHHHHhcCCCEEEEEec
Confidence 356788999999999887753
No 390
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=40.78 E-value=41 Score=35.09 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
-.|.+|+=+|+|. |..+. ...+..|+.+|.++.-...+...++++. ++.++ -...|+|+....-
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~--~leel---l~~ADIVI~atGt------- 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV--TLEDV---VETADIFVTATGN------- 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec--cHHHH---HhcCCEEEECCCc-------
Confidence 4688999999996 33221 2456789999888765544444455432 22222 1357999886321
Q ss_pred HHHHHH-HHHHhccccCcEEEEEEc
Q 016157 197 RRKKAI-EELVRVVKKGSLVLITVW 220 (394)
Q Consensus 197 ~~~~~L-~ei~r~LkpGG~lli~~~ 220 (394)
..++ .+....+|||++|+-..-
T Consensus 320 --~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 320 --KDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred --ccccCHHHHhccCCCcEEEEcCC
Confidence 2234 477888999998877643
No 391
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=40.13 E-value=1.1e+02 Score=30.18 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEE-eec--CCC-----CCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLV-ADA--VNL-----PYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~-~D~--~~l-----p~~~~~fD~Vi 184 (394)
..+.+|.+||=.|+|. |.++ ....+. .|+++|.+++-++.+++.+...+. .+- ..+ ....+.+|+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4567899999998642 1121 124566 799999999999999887754322 111 000 01123578887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
-... ....+..+.+.+++| |++++...
T Consensus 263 d~~G---------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 ECTG---------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ECCC---------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 5421 134677778889996 99887754
No 392
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=39.98 E-value=1.2e+02 Score=30.42 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-------CCCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-------LPYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-------lp~~~~~fD~Vi~ 185 (394)
...++|.+|.=+|||-=.+. ....-..++++|+++.-++.|++.|.+-..-.... ....++-.|.++-
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e 260 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE 260 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE
Confidence 35677888888888742221 11333489999999999999999864322221111 0122334565543
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.. - ....++.....+.++|..++.-.+..
T Consensus 261 ~~-----G----~~~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 261 CV-----G----NVEVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred cc-----C----CHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 22 2 23467777788888999888865543
No 393
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=39.94 E-value=56 Score=33.12 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHH
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV 159 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~ 159 (394)
+++..-+..+.|+.+||-|.+|-...+.+ ....+|++||+|+..+....
T Consensus 24 p~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 24 PRVDMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred cHHHHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 45555566788999999998887776543 33369999999998766544
No 394
>PRK10083 putative oxidoreductase; Provisional
Probab=39.91 E-value=1.4e+02 Score=28.61 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEEcCcc-Cccc----ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CC--CCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----YR--SDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l----~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~--~~~fD~Vi~ 185 (394)
..+.+|.+||=.|+|. |..+ +...+. .++++|.++.-.+.+++.+++.+.. ..+.. +. ...+|+++.
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN-NAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHhcCCCCCCEEEE
Confidence 3567888999999652 1111 112355 5888999999999888877643321 11111 11 112456665
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... . ...+.++.+.|+++|+++....
T Consensus 235 ~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 235 AAC-----H----PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCC-----C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 321 1 3467888899999999988643
No 395
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=39.82 E-value=1.6e+02 Score=28.37 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=57.3
Q ss_pred cCCCCCCEEEEEcCccCcc--c---ccCCC-cEEEEEeCCHHHHHHHHHcCCeEEEe-ec------CCCCCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKY--L---GLNPD-CFFVGCDISPSLIKICVDRGHEVLVA-DA------VNLPYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~--l---~~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~-D~------~~lp~~~~~fD~Vi 184 (394)
..+.++.+||=.|+|. .- + ....+ ..+++++.++.-.+.+++.++..+.. +- ..+ .....+|+++
T Consensus 163 ~~~~~~~~vlI~g~~~-vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvl 240 (340)
T cd05284 163 PYLDPGSTVVVIGVGG-LGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVI 240 (340)
T ss_pred ccCCCCCEEEEEcCcH-HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEE
Confidence 3456788899888553 31 1 11334 78999999988888887666532211 11 011 1123588888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.... . ...+.++.+.|+++|+++....
T Consensus 241 d~~g-----~----~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 241 DFVG-----S----DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred EcCC-----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence 6422 1 3467888899999999987653
No 396
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=38.93 E-value=1.2e+02 Score=29.29 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEehh
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~~~ 187 (394)
.+|.+||=.|+|. |..+ ....+. .+++++.++.-.+.+++.+.+.+. +....+ .....+|+|+...
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~d~~ 240 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAV-NVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEe-cCccccHHHHHHHhcCCCCCCEEEECC
Confidence 4677887777653 3322 123555 688888888888888777654322 111111 1234588888632
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. -...+..+.+.|+++|.++....
T Consensus 241 g---------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 241 G---------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred C---------CHHHHHHHHHHHhcCCEEEEEec
Confidence 2 13467888999999999988864
No 397
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=36.51 E-value=2.5e+02 Score=26.92 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=59.1
Q ss_pred CCCCCCEEEEEcCccCc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC-CC----C--CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NL----P--YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~--~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l----p--~~~~~fD~Vi~~ 186 (394)
.+.++.+||=.|+|.+. .+ ....+..++.+..++.-.+.+++.++..+...-. +. . .....+|+++..
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~ 241 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVT 241 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEc
Confidence 56778899988887543 32 1255678999999988877776655433221110 10 0 113458888842
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. -...+..+.+.|+++|+++...+
T Consensus 242 ~~---------~~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 242 AV---------SAAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred CC---------chHHHHHHHHHhhcCCEEEEecC
Confidence 21 13467778899999999998754
No 398
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.33 E-value=1.1e+02 Score=28.38 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=42.9
Q ss_pred CCEEEEEcCccCcc--c-c--cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCC-----CC-----CCCccEEE
Q 016157 123 GSLVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YR-----SDFGDAAI 184 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l-~--~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp-----~~-----~~~fD~Vi 184 (394)
+.++|=.|++.|.= + . ...+..|+.+|.+..-++...+. .+.++.+|+.+.. +. -+..|+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 56889898766542 1 1 24677999999987644433322 3678888987642 10 14679988
Q ss_pred ehhhh
Q 016157 185 SIAVL 189 (394)
Q Consensus 185 ~~~vl 189 (394)
.+...
T Consensus 86 ~~ag~ 90 (261)
T PRK08265 86 NLACT 90 (261)
T ss_pred ECCCC
Confidence 87654
No 399
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=36.19 E-value=38 Score=34.79 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=37.5
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
...++|..|-|+-||.|-+.. ...++.|++-|+++++++..+..
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKAN 290 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHh
Confidence 356889999999999999853 35678999999999999998765
No 400
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=36.18 E-value=2.3e+02 Score=26.99 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCEEEEEcCc--cCcccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----CCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCG--NGKYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG--~G~~l~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~~~~~fD~Vi~~~vl~h 191 (394)
|.+||=.|++ .|..+. ... +..++++..+++..+.+++.+.+.+...-..+. ...+.+|+|+....
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~--- 225 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTH--- 225 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCC---
Confidence 7889888864 333321 123 789999999888888887666543322111110 12245888875321
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-...+.++.++|+++|+++..
T Consensus 226 ------~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 226 ------TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred ------cHHHHHHHHHHhccCCEEEEE
Confidence 134577888999999998864
No 401
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=36.00 E-value=1.6e+02 Score=28.35 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC-CCC---CCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~lp---~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+||=.|+|. |..+ ....+..++.++.++.-++.+++.+...+..... ++. .....+|+++....
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g-- 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAP-- 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCC--
Confidence 567788999998542 1121 1245678999999998888887776543221111 110 00134788875321
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.+.|+++|+++....
T Consensus 238 ---~----~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 ---N----AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ---c----hHHHHHHHHHcccCCEEEEEec
Confidence 1 3467788999999999887653
No 402
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=35.95 E-value=99 Score=29.91 Aligned_cols=84 Identities=20% Similarity=0.133 Sum_probs=51.5
Q ss_pred CEEEEEcCcc-Cccc-c--cCCC--cEEEEEeCCHHHHHHHHHcCCeE-EEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGN-GKYL-G--LNPD--CFFVGCDISPSLIKICVDRGHEV-LVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l-~--~~~~--~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.+|.=||+|. |..+ . ...+ ..|+++|.++..++.+++.++.. ...+.... -...|+|+..--...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~---~~~aDvViiavp~~~----- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPVGA----- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH---hcCCCEEEECCCHHH-----
Confidence 5788899886 3322 1 1223 48999999999888887766421 11121111 135798887654322
Q ss_pred HHHHHHHHHHhccccCcEEE
Q 016157 197 RRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~ll 216 (394)
...+++++...+++|+.++
T Consensus 79 -~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -HHHHHHHHHhhCCCCCEEE
Confidence 3456777778888887543
No 403
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=35.79 E-value=2.2e+02 Score=28.23 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred cCCCCCCEEEEEcCccCc-cc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecC-----CC-----C-CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NL-----P-YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~l-----p-~~~~~fD 181 (394)
..+.+|.+||=.|+|.=. .+ ....+. .+++++.++.-.+.+++.+++.+.. .. .. . .....+|
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~~~~v~~~~~g~gvD 277 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFN-PTKMRDCLSGEKVMEVTKGWGAD 277 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEc-ccccccccHHHHHHHhcCCCCCC
Confidence 457788888887764211 11 124566 7999999998888888877643321 11 10 0 1224589
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|+.... . ....+.++.+.|+++|+++...
T Consensus 278 vvld~~g-----~---~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 278 IQVEAAG-----A---PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred EEEECCC-----C---cHHHHHHHHHHHHcCCEEEEEC
Confidence 8886422 2 2356788889999999998764
No 404
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=35.74 E-value=1.5e+02 Score=29.82 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=61.0
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeec-CCCC------CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADA-VNLP------YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~-~~lp------~~~~~fD~Vi~ 185 (394)
..+.+|.+||=.|+|. |.++ ....+.. ++.+|.++.-++.+++.+...+...- .++. .....+|+++-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3467788887787753 2221 1234554 66789999899999988875432111 0110 11235898886
Q ss_pred hhhhhh---cC--ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHH---LS--TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~h---l~--~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...-.. .. ........+++..+++++||++++.-.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 543210 00 000123578999999999999998764
No 405
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.29 E-value=2.1e+02 Score=28.14 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=61.8
Q ss_pred HcCCCCCCEEEEEcCccCc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe----ecCC-C-CCC-CCCccEEE
Q 016157 117 LNSLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA----DAVN-L-PYR-SDFGDAAI 184 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~--~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~-l-p~~-~~~fD~Vi 184 (394)
...+++|.+||=.|...|. ++ ....+..++++--+++-.+.+++.+...... |+.+ + .+. ...+|+|+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEE
Confidence 3457889999999976665 22 1234446777777776666888886543332 2211 1 111 23689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..-. ...+.+..+.|+++|+++.+....
T Consensus 217 D~vG----------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 217 DTVG----------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ECCC----------HHHHHHHHHHhccCCEEEEEecCC
Confidence 7543 356667889999999999987543
No 406
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=35.22 E-value=37 Score=28.84 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEcCccC--c---cc---ccCCCcEEEEEeCCHHHHHHHHHc
Q 016157 128 DAGCGNG--K---YL---GLNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 128 DvGCG~G--~---~l---~~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
|||+..| . +. ...++..++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 2 22 246788999999999987766554
No 407
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=35.18 E-value=49 Score=28.00 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=55.2
Q ss_pred EEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC-------CCC---CCCCCccEEEehhhhhh
Q 016157 126 VLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-------NLP---YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 126 VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-------~lp---~~~~~fD~Vi~~~vl~h 191 (394)
|+=+|+|. |.++. ...+.+|+.++.+. .++..++.++.+...+.. ..+ .....+|+|+..-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG--
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc--
Confidence 34466664 33322 13788999999998 666666666555443300 011 235789999886311
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.....+++.+.+.+.|+..+++.--.
T Consensus 78 ----~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 78 ----YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ----GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ----cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 11577999999999999777665433
No 408
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=35.01 E-value=2.9e+02 Score=25.49 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeecCCCC--CCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLP--YRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~lp--~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+||=.|+. .|..+ ....+..++.++.+. ..+.+++.+. .++.....+.. .....+|+++...
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~--- 216 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV--- 216 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC---
Confidence 46788899988863 23322 124567888888776 6666665553 22222111111 2234578887532
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. ..+..+.+.|+++|+++...
T Consensus 217 --~~-----~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 217 --GG-----ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred --ch-----HHHHHHHHHHhcCcEEEEEc
Confidence 11 26677788999999988764
No 409
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=34.83 E-value=1.3e+02 Score=29.59 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-ecCCC-----CCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNL-----PYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----p~~~~~fD~Vi~~~ 187 (394)
.+.++.+||=.|+|. |..+ ....+. .++++|.++.-.+.+++.+...+.. +-.++ ......+|+|+...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~ 262 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTT 262 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECC
Confidence 466788999888643 2222 124456 6999999999888888776543321 11111 01134588888643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. . ...+..+.+.|+++|+++...
T Consensus 263 g-----~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 263 G-----V----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred C-----C----cHHHHHHHHHhccCCEEEEeC
Confidence 2 1 245788899999999988764
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=34.29 E-value=1e+02 Score=29.73 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=54.7
Q ss_pred CEEEEEcCcc-Ccc-cc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhH
Q 016157 124 SLVLDAGCGN-GKY-LG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 124 ~~VLDvGCG~-G~~-l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
.+|+=+|.|- |.. .+ ......++|.|.+...++.+.+.++.....+.... ......|+|+..--+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~-~~~~~aD~VivavPi~~------ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLA-EAAAEADLVIVAVPIEA------ 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhh-hhcccCCEEEEeccHHH------
Confidence 4677777663 332 22 24455789999999999988877764432221101 11345799988765543
Q ss_pred HHHHHHHHHhccccCcEEEEEE
Q 016157 198 RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...+|+++...|+||. ++..+
T Consensus 77 ~~~~l~~l~~~l~~g~-iv~Dv 97 (279)
T COG0287 77 TEEVLKELAPHLKKGA-IVTDV 97 (279)
T ss_pred HHHHHHHhcccCCCCC-EEEec
Confidence 4678888888888874 44444
No 411
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=33.64 E-value=2e+02 Score=27.89 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~ 186 (394)
.+.++.+||-.|+|. |..+ ....+. .+++++.++.-.+.+.+.++..+.. ..+.. ...+.+|+++..
T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~d~vid~ 250 (350)
T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVN-GSDPDAAKRIIKAAGGGVDAVIDF 250 (350)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEec-CCCccHHHHHHHHhCCCCcEEEEC
Confidence 344678888887642 2221 124566 7899999998888887767643222 11111 111257888754
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. . ...+..+.+.|+++|+++...
T Consensus 251 ~g-----~----~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 251 VN-----N----SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CC-----C----HHHHHHHHHHhhcCCeEEEEC
Confidence 32 1 346888899999999988764
No 412
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=33.59 E-value=2.6e+02 Score=27.67 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEee-cC-------------------C-
Q 016157 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVAD-AV-------------------N- 172 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D-~~-------------------~- 172 (394)
.+.++.+||=.|+. .|..+ ....+..+++++.++.-.+.+++.++..+... -. .
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEA 269 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhcc
Confidence 46678899999973 23322 23567788899999999999988765322210 00 0
Q ss_pred --C-----CC-CCC-CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 173 --L-----PY-RSD-FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 173 --l-----p~-~~~-~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+ .. ... .+|+++.... ...+.+..+.|+++|+++....
T Consensus 270 ~~~~~~v~~l~~~~~g~d~vid~~g----------~~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 270 RRFGKAIWDILGGREDPDIVFEHPG----------RATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred chHHHHHHHHhCCCCCCeEEEECCc----------hHhHHHHHHHhccCCEEEEEcc
Confidence 0 00 111 4788876422 1346677899999999997643
No 413
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=32.82 E-value=3.4e+02 Score=25.62 Aligned_cols=91 Identities=10% Similarity=0.014 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---------CCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---------~~~~~fD~V 183 (394)
..+.++.+||=.|++ .|..+ ....+..++.+..++...+.+++.++..+.. ....+ .....+|++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIR-YPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEe-cCChhHHHHHHHHHhCCCCceEE
Confidence 356778899988854 33332 1255677777888998888887666532221 11110 123458888
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.... ...+..+.+.|+++|+++...
T Consensus 215 i~~~~----------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 215 LDCVG----------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EECCc----------hHHHHHHHHHhccCCeEEEEe
Confidence 86432 246677888999999988764
No 414
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=32.76 E-value=2.3e+02 Score=27.34 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeec-CCC-----C-CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPD-CFFVGCDISPSLIKICVDRGHEVLVADA-VNL-----P-YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~-~~l-----p-~~~~~fD~Vi~ 185 (394)
..+.++.+||=.|+|. |..+ ....+ ..+++++.++.-...+++.++..+...- .+. . .....+|+++.
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 3466787877777632 1111 12345 6788899998888888776653322111 110 0 12345898886
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. .. ...+..+.+.|+++|+++...
T Consensus 242 ~~-----g~----~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI----PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC----HHHHHHHHHhccCCcEEEEec
Confidence 43 22 345788889999999988664
No 415
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=32.07 E-value=2.9e+02 Score=25.57 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=57.9
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEE-eecCCC-----C-CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNL-----P-YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l-----p-~~~~~fD~Vi~ 185 (394)
..+.++.+||=.|+. .|..+ ....+..+++++.++...+.+++.++..+. .+-... . .....+|+++.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 211 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD 211 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEE
Confidence 356778899988853 33332 125577899999999888888776653322 111111 0 12345888886
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... . ..+..+.+.|+++|+++...
T Consensus 212 ~~~-----~-----~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 212 GVG-----K-----DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCC-----c-----HhHHHHHHhhccCcEEEEEe
Confidence 321 1 35667788999999988664
No 416
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=31.93 E-value=1.3e+02 Score=28.68 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=49.7
Q ss_pred EEEEEcCcc-Cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCe-EEEeecCCCCCCCCCccEEEehhhhhhcCChhHHH
Q 016157 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 125 ~VLDvGCG~-G~-~l~--~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
+|.=||+|. |. ++. ...+..|+++|.++..++.+.+.+.- ....+.. . -...|+|+..--... ..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~---~-~~~aDlVilavp~~~------~~ 71 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLS---L-LKDCDLVILALPIGL------LL 71 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHh---H-hcCCCEEEEcCCHHH------HH
Confidence 455677764 22 222 14567999999999999888877531 1111111 1 135688887654322 35
Q ss_pred HHHHHHHhccccCcEEEEE
Q 016157 200 KAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~lli~ 218 (394)
++++++...++|+ .++..
T Consensus 72 ~~~~~l~~~l~~~-~ii~d 89 (279)
T PRK07417 72 PPSEQLIPALPPE-AIVTD 89 (279)
T ss_pred HHHHHHHHhCCCC-cEEEe
Confidence 5678888888776 44443
No 417
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=31.92 E-value=1.9e+02 Score=27.83 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCCCCCEEEEEcCc-cCccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEE-eecCCC-----C-CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCG-NGKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLV-ADAVNL-----P-YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG-~G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l-----p-~~~~~fD~Vi~~ 186 (394)
.+.+|.+||=.|+| .|..+ ....+.. +++++.++...+.+++.++..+. .+-.++ . .....+|+|+..
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~ 241 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEEC
Confidence 56788888888864 22222 1245666 88999998888877665553321 111110 0 122348988864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. . ...+..+.+.|+++|+++...
T Consensus 242 ~~-----~----~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 242 TG-----S----PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CC-----C----hHHHHHHHHHhhcCCEEEEEe
Confidence 22 1 246777788999999988754
No 418
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=31.66 E-value=2.1e+02 Score=27.23 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCEEEEEcCcc--Cccc---ccCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-----CCCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCGN--GKYL---GLNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG~--G~~l---~~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----p~~~~~fD~Vi~~~vl~h 191 (394)
+.+||=.|.+. |..+ ....+ ..+++++.++...+.+++.++..+...-... ....+.+|+++...
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~---- 225 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLT---- 225 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEcc----
Confidence 88999888632 3222 12456 7899999998888888766654332111111 01124578877542
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. ...+..+.+.|+++|+++...
T Consensus 226 -~~----~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 226 -DT----DQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred -Cc----HHHHHHHHHHhcCCCEEEEec
Confidence 11 356788899999999998764
No 419
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=31.30 E-value=2.2e+02 Score=27.54 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=55.6
Q ss_pred CEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEee-cCCC------CCCCCCccEEEehhhhhh
Q 016157 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVAD-AVNL------PYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D-~~~l------p~~~~~fD~Vi~~~vl~h 191 (394)
.+|+=+|+|. |.++. ...+..|+.++.+.+.++..++. |+.+...+ .... +-..+.||+|+..-=-++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 4688899884 55432 13467899999987766666554 55443211 1111 111247898877532222
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...+++.+...+.++..++..-
T Consensus 83 ------~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 83 ------AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ------HHHHHHHHHhhCCCCCEEEEEe
Confidence 4678889999999998766653
No 420
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=30.52 E-value=14 Score=31.17 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHHHHHHHhccccCcEEEEEE
Q 016157 199 KKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 199 ~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+++.+.++++|||.+.-+.
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-
T ss_pred HHHHHHHHHHhCCCcEEEEee
Confidence 689999999999999776554
No 421
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=30.47 E-value=51 Score=31.60 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred EEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEehhh
Q 016157 125 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISIAV 188 (394)
Q Consensus 125 ~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~~~v 188 (394)
+++|+=||-|.+.. ...+. .+.++|+++.+.+.-+.+ + ....+|+..+. ++. .+|+++...-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccC
Confidence 68999999998732 13334 688999999998887766 5 88899998875 333 5899987543
No 422
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=30.36 E-value=1.5e+02 Score=26.26 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=59.7
Q ss_pred CCCCCEEEEEcCccCcccc-c--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC---CC-CCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN---LP-YRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~-~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~---lp-~~~~~fD~Vi~~~vl~hl 192 (394)
..++.+|+=|||=+-...- . .++..++-.|+....-....+ .|+.-|... +| .-.++||+|++---+ +
T Consensus 23 ~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~---~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l 97 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD---EFVFYDYNEPEELPEELKGKFDVVVIDPPF--L 97 (162)
T ss_pred cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc---ceEECCCCChhhhhhhcCCCceEEEECCCC--C
Confidence 3456799999997765432 2 466788889988766543221 366666554 33 115799999996544 3
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. +=..+....+.-++|+++.+++.+.
T Consensus 98 ~~-ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 98 SE-ECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CH-HHHHHHHHHHHHHhCccceEEEecH
Confidence 22 2133445556666688899888864
No 423
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=30.05 E-value=71 Score=32.18 Aligned_cols=96 Identities=21% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC-CCCCCccEEEe--
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFGDAAIS-- 185 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp-~~~~~fD~Vi~-- 185 (394)
.+.+.||++|+.+... +..+-.+--|+++..+.+..+..+ +..+..+|+...+ +-.+.|+++.+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 3468999999998753 223334556777777777776554 3455555554433 11223333322
Q ss_pred -----------------------hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 -----------------------IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 -----------------------~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++.|+.+ ...++......++|+|.+++...
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~---~~~~f~~~~~~~~~~~~v~~~e~ 314 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQD---KSALFRGRVATLKPGGKVLILEY 314 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeeccc---ccHHHHhHhhccCcCceEEehhh
Confidence 223334433 23455666677777777777654
No 424
>PRK09072 short chain dehydrogenase; Provisional
Probab=29.77 E-value=1.8e+02 Score=26.93 Aligned_cols=69 Identities=17% Similarity=0.079 Sum_probs=45.8
Q ss_pred CCEEEEEcCccCccc---c--cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCC---------CCCCccEE
Q 016157 123 GSLVLDAGCGNGKYL---G--LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPY---------RSDFGDAA 183 (394)
Q Consensus 123 g~~VLDvGCG~G~~l---~--~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~---------~~~~fD~V 183 (394)
+.++|=.|++.|.-. . ...|..|++++.++..++...+. .+.++.+|+.+..- ..+..|++
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 567888887766521 1 25678999999998766555432 56788888876420 01457999
Q ss_pred Eehhhhhh
Q 016157 184 ISIAVLHH 191 (394)
Q Consensus 184 i~~~vl~h 191 (394)
+..+...+
T Consensus 85 v~~ag~~~ 92 (263)
T PRK09072 85 INNAGVNH 92 (263)
T ss_pred EECCCCCC
Confidence 88776543
No 425
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=29.69 E-value=2.6e+02 Score=26.50 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCcc--Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC------CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~--G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------p~~~~~fD~Vi~~~vl 189 (394)
..+.+||=.|+.. |..+ ....+..++.++.++.-.+.+++.++..+.. ..+. ......+|+++....
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~d~vld~~g- 222 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIP-REELQEESIKPLEKQRWAGAVDPVG- 222 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEc-chhHHHHHHHhhccCCcCEEEECCc-
Confidence 3466888888732 2222 1245678999999998888887776533221 1110 112345788775421
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..+.+.|+++|+++....
T Consensus 223 ---------~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 223 ---------GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ---------HHHHHHHHHHhhcCCEEEEEee
Confidence 2456788899999999988754
No 426
>PLN02702 L-idonate 5-dehydrogenase
Probab=28.97 E-value=3.2e+02 Score=26.69 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-ecC--CCC--------CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAV--NLP--------YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~--~lp--------~~~~~fD 181 (394)
..+.++.+||=+|+|. |..+ ....+. .++++|.++...+.+++.+...... +.. +++ ...+.+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 3466788888887641 2221 123454 5889999988888888776544321 111 110 1124588
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|+.... . ...+..+.+.|+++|+++...
T Consensus 257 ~vid~~g-----~----~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 257 VSFDCVG-----F----NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred EEEECCC-----C----HHHHHHHHHHHhcCCEEEEEc
Confidence 8876421 1 246788899999999987664
No 427
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=28.03 E-value=2.8e+02 Score=26.55 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC------CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp------~~~~~fD~Vi~~~ 187 (394)
.+.++.+||=.|+|. |..+ ....+. .+++++.++.-...+++.+...+..+-.++. .....+|+++...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 456788888777541 1111 124565 7899988887777777766543322211110 1224589888642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. . ...+.++.+.|+++|+++...
T Consensus 244 ~-----~----~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 244 G-----G----AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEC
Confidence 1 1 346788889999999988764
No 428
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=27.99 E-value=1.9e+02 Score=28.41 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeE-EEeecC--CC-----CCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEV-LVADAV--NL-----PYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~-~~~D~~--~l-----p~~~~~fD~Vi 184 (394)
..+.+|.+||=.|+|. |..+ ....+. .+++++.++.-.+.+++.++.- +...-. ++ ....+.+|+++
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vi 258 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAF 258 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEE
Confidence 3567888888887642 1111 123455 5889999998888887766532 211111 00 01124588887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccc-cCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~Lk-pGG~lli~~ 219 (394)
.... . ...+..+.+.|+ ++|+++...
T Consensus 259 d~~g-----~----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 259 EVIG-----S----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred ECCC-----C----HHHHHHHHHHhccCCCEEEEEe
Confidence 6432 1 246777888999 999998764
No 429
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.91 E-value=4.9e+02 Score=24.59 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCccC--ccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC---CCCCCCccEEEehhhh
Q 016157 118 NSLPSGSLVLDAGCGNG--KYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL---PYRSDFGDAAISIAVL 189 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G--~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l---p~~~~~fD~Vi~~~vl 189 (394)
..+.++.+||=.|+..+ ..+ ....+..+++++. +...+.+++.+...+.....+. ....+.+|+++....
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~vl~~~~- 212 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVG- 212 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCceEEEECCc-
Confidence 35678889998887332 222 2245678888886 7777777666643322111111 112245787775432
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ..+..+.+.|+++|+++...
T Consensus 213 ----~-----~~~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 213 ----G-----ESYEESYAALAPGGTLVCYG 233 (331)
T ss_pred ----h-----HHHHHHHHHhcCCCEEEEEc
Confidence 1 23677889999999988664
No 430
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=27.29 E-value=44 Score=33.62 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeec---CCCCCCCCCccEEEehhhhhhcCC
Q 016157 123 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVADA---VNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 123 g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~---~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
+.+|+=+|+|. |..+. ...+..|+.+|.++.-++.+... +..+ ..+. ..+.-.-..+|+|+....+.--..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v-~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRI-HTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCcee-EeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 35689998873 33221 24466899999998776665544 3221 1111 111101135799997542211111
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEE
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.-+-+++.+.+|||+.++-..
T Consensus 246 ---p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 246 ---PKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ---CcCcCHHHHhcCCCCCEEEEEe
Confidence 2223366667789997766543
No 431
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.21 E-value=3.2e+02 Score=25.48 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=52.6
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCC---CCCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL---PYRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l---p~~~~~fD~Vi~~~v 188 (394)
..+.++.+||-.|+. .|..+ ....+.++++++.+ ...+.+++.++..+.. ..... ....+.+|+++....
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 346788999999983 33332 22556788888855 6667776666532211 11111 122356898886432
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
- . ....... ...|+++|+++....
T Consensus 218 ~----~---~~~~~~~-~~~l~~~g~~i~~g~ 241 (319)
T cd08267 218 N----S---PFSLYRA-SLALKPGGRYVSVGG 241 (319)
T ss_pred c----h---HHHHHHh-hhccCCCCEEEEecc
Confidence 1 0 1122222 223999999987754
No 432
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=27.17 E-value=1.9e+02 Score=27.03 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCCC---CEEEEEcCccCccc--------ccCCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeecC
Q 016157 111 PKVATFLNSLPSG---SLVLDAGCGNGKYL--------GLNPDCFFVGCDISPSLIKICVDR----G----HEVLVADAV 171 (394)
Q Consensus 111 ~~l~~~l~~l~~g---~~VLDvGCG~G~~l--------~~~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~ 171 (394)
|...+|+..+..| ..|+++.|+-|... ....+.+++.|-+.+..+...++. + ++|+.++..
T Consensus 27 p~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 27 PGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAP 106 (218)
T ss_pred CCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCH
Confidence 4566666655544 57899977654321 126677889998887765544443 2 478888743
Q ss_pred -CCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccc--cCcEEEEEE
Q 016157 172 -NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK--KGSLVLITV 219 (394)
Q Consensus 172 -~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~Lk--pGG~lli~~ 219 (394)
.+-..-...|+++.-.- ++.+++++.++++ |.|.+++..
T Consensus 107 e~~~~~~~~iDF~vVDc~---------~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 107 EEVMPGLKGIDFVVVDCK---------REDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred HHHHhhccCCCEEEEeCC---------chhHHHHHHHHhccCCCceEEEEe
Confidence 32211245788876432 3344445555544 457666654
No 433
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=26.92 E-value=1.2e+02 Score=26.92 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=50.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc-c--c-CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCC----
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL-G--L-NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP---- 174 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l-~--~-~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp---- 174 (394)
+..++...+....|+-+|||--... + . .++..++-+|.-.-+ +.-++. +..++.+|+.+..
T Consensus 69 v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~-~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~ 147 (183)
T PF04072_consen 69 VREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVI-ALKRRLLPESGARPPANYRYVPADLRDDSWIDA 147 (183)
T ss_dssp HHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHH-HHHHHHHHHTHHHHHEESSEEES-TTSHHHHHH
T ss_pred HHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHH-HHHHHHHHhCcccCCcceeEEeccccchhhHHH
Confidence 3444433233348999999976532 2 1 246788888885433 222111 3568999998621
Q ss_pred -----CCCCCccEEEehhhhhhcCChhHHHHHHHHH
Q 016157 175 -----YRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205 (394)
Q Consensus 175 -----~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei 205 (394)
+..+..-++++-+++.+++... ...+|+.+
T Consensus 148 L~~~g~~~~~ptl~i~Egvl~Yl~~~~-~~~ll~~i 182 (183)
T PF04072_consen 148 LPKAGFDPDRPTLFIAEGVLMYLSPEQ-VDALLRAI 182 (183)
T ss_dssp HHHCTT-TTSEEEEEEESSGGGS-HHH-HHHHHHHH
T ss_pred HHHhCCCCCCCeEEEEcchhhcCCHHH-HHHHHHHh
Confidence 3345666788888899997543 55565554
No 434
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=26.89 E-value=82 Score=32.83 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=57.6
Q ss_pred CCCEEEEEcCcc-Ccccc---cCCCcEEE------EEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGN-GKYLG---LNPDCFFV------GCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~-G~~l~---~~~~~~v~------gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.|.+|+=||||. |.... ...|.+|+ ++|......+.|.+.++.+ .+..+. -...|+|++..
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~~~Ea---~~~ADvVviLl---- 105 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GTYEEL---IPQADLVINLT---- 105 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CCHHHH---HHhCCEEEEcC----
Confidence 468999999996 43211 13455666 5666677777777777643 333222 24568888753
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|+.. ...+.+++...||||..|.++.
T Consensus 106 -PDt~-q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 106 -PDKQ-HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred -ChHH-HHHHHHHHHhhCCCCCEEEecC
Confidence 4433 4556699999999999998873
No 435
>PRK05693 short chain dehydrogenase; Provisional
Probab=26.64 E-value=2.6e+02 Score=25.97 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=44.6
Q ss_pred EEEEEcCccCc--cc-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----C-----CCCCccEEEehhhh
Q 016157 125 LVLDAGCGNGK--YL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-----RSDFGDAAISIAVL 189 (394)
Q Consensus 125 ~VLDvGCG~G~--~l-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~-----~~~~fD~Vi~~~vl 189 (394)
++|=.|++.|. .+ . ...+..|++++.+...++.....++.++.+|+.+.. + ..+..|+++.+...
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 56777775554 21 1 246789999999987776666667888889987632 0 12468999988765
Q ss_pred h
Q 016157 190 H 190 (394)
Q Consensus 190 ~ 190 (394)
.
T Consensus 83 ~ 83 (274)
T PRK05693 83 G 83 (274)
T ss_pred C
Confidence 3
No 436
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=26.59 E-value=72 Score=30.54 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEcCccCccccc----C-----CCcEEEEEeCCHHHHHH---HHHcC----CeEEEeecCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----N-----PDCFFVGCDISPSLIKI---CVDRG----HEVLVADAVNLP 174 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~-----~~~~v~gvD~S~~~l~~---a~~~~----i~~~~~D~~~lp 174 (394)
.+.++..++|+|||.|.+... . +...++.||....-.+. .++.. +.=+..|+.++.
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 356778999999999997532 1 56689999986532221 11112 455677887765
No 437
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=26.53 E-value=25 Score=28.29 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=9.9
Q ss_pred EEEEcCccCccc
Q 016157 126 VLDAGCGNGKYL 137 (394)
Q Consensus 126 VLDvGCG~G~~l 137 (394)
-+|||||.|...
T Consensus 6 NIDIGcG~GNTm 17 (124)
T PF07101_consen 6 NIDIGCGAGNTM 17 (124)
T ss_pred ccccccCCCcch
Confidence 479999999864
No 438
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.94 E-value=1.6e+02 Score=21.55 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=34.1
Q ss_pred CeeEecccccccchHHHHHhcccCCcEEEEeeeccCCeEEEEEE
Q 016157 349 AVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQR 392 (394)
Q Consensus 349 ~~~~~RyyH~F~~gELe~l~~~~~~~~i~~~~~d~~Nwcvi~~k 392 (394)
...--+.-|--....|...|...| .++++..-+.|.|.++++|
T Consensus 28 ~~l~v~~d~~~~~~di~~~~~~~g-~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 28 EVLEVLVDDPAAVEDIPRWCEENG-YEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp -EEEEEESSTTHHHHHHHHHHHHT-EEEEEEEESSSSEEEEEEE
T ss_pred CEEEEEECCccHHHHHHHHHHHCC-CEEEEEEEeCCEEEEEEEC
Confidence 345556666667788999999986 8988887899999999887
No 439
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.77 E-value=3.8e+02 Score=26.13 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCEEEEEcCccCccc-cc--CCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeecCCCC---------CCCCCc
Q 016157 123 GSLVLDAGCGNGKYL-GL--NPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNLP---------YRSDFG 180 (394)
Q Consensus 123 g~~VLDvGCG~G~~l-~~--~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~lp---------~~~~~f 180 (394)
-..|+-+|||--.-. +. ..+..|+-+|.=+ .++.=++. + ..++..|+.+-. |..+.-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pe-vi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPE-VIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcH-HHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 368999999965432 22 3356788888743 33332221 2 578889988422 334555
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
=++++-+++.+++.++ ..++|..|...+.||-.++...
T Consensus 172 t~~iaEGLl~YL~~~~-v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 172 TLWIAEGLLMYLPEEA-VDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred eEEEeccccccCCHHH-HHHHHHHHHHhCCCCceEEEec
Confidence 6888889999998766 7899999999998877766654
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=25.77 E-value=1.4e+02 Score=29.29 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHH-cCCeEEEeecC--CCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVD-RGHEVLVADAV--NLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~--~lp~~~~~fD~Vi~~~vl~hl 192 (394)
..+|.+||=.|+|. |.++ ....+..+++++.++.....+.+ .+......+.. .+.-....+|+++-...
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g---- 253 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP---- 253 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC----
Confidence 35788888887643 2221 12456778888888766555543 45542221111 01000124787775422
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.+.|++||+++..-.
T Consensus 254 -~----~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 -V----FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -c----hHHHHHHHHHhccCCEEEEECC
Confidence 1 2467778899999999887643
No 441
>PRK08655 prephenate dehydrogenase; Provisional
Probab=25.70 E-value=1.6e+02 Score=30.30 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=48.7
Q ss_pred EEEEEc-Cc-cCcccc---cCCCcEEEEEeCCHHHH-HHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHH
Q 016157 125 LVLDAG-CG-NGKYLG---LNPDCFFVGCDISPSLI-KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (394)
Q Consensus 125 ~VLDvG-CG-~G~~l~---~~~~~~v~gvD~S~~~l-~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~ 198 (394)
+|+=|| +| -|..+. ...+..|+++|.++... +.+.+.++.+. .+.... -...|+|+..--... .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~-~~~~e~---~~~aDvVIlavp~~~------~ 71 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA-NDNIDA---AKDADIVIISVPINV------T 71 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec-cCHHHH---hccCCEEEEecCHHH------H
Confidence 466676 45 343322 14567899999998764 55655565421 122111 134699887654432 3
Q ss_pred HHHHHHHHhccccCcEEEEEE
Q 016157 199 KKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 199 ~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++.++...++||. +++.+
T Consensus 72 ~~vl~~l~~~l~~~~-iViDv 91 (437)
T PRK08655 72 EDVIKEVAPHVKEGS-LLMDV 91 (437)
T ss_pred HHHHHHHHhhCCCCC-EEEEc
Confidence 467788888888875 44444
No 442
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=25.46 E-value=2.4e+02 Score=26.82 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=50.5
Q ss_pred EEEEEcCccCcc-cc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeec---------CCCCCCCCCccEEEehhhhhh
Q 016157 125 LVLDAGCGNGKY-LG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADA---------VNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 125 ~VLDvGCG~G~~-l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~---------~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+|+=+|+|.-.. +. ...+.+|+.++. ++.++..++.++.+...+. .+..-....+|+|+..---
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc--
Confidence 577788886543 21 134678999999 6666666666554432211 0110112568877764321
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.. ...+++.+...+.++..++..
T Consensus 79 ---~~-~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 79 ---YQ-LDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred ---cC-HHHHHHHHHhhcCCCCEEEEe
Confidence 11 567888888888887655544
No 443
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=25.30 E-value=72 Score=31.77 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=24.4
Q ss_pred EEEEEcCccCcc-------cc-cCCCcEEEEEeCCHHHHHHH
Q 016157 125 LVLDAGCGNGKY-------LG-LNPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 125 ~VLDvGCG~G~~-------l~-~~~~~~v~gvD~S~~~l~~a 158 (394)
.++-.|.|||.. +. ..+..+|+|+|+....+-.-
T Consensus 214 Di~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~ 255 (362)
T KOG1252|consen 214 DIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSG 255 (362)
T ss_pred CEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccC
Confidence 467777777764 32 48899999999987765433
No 444
>PRK12742 oxidoreductase; Provisional
Probab=25.19 E-value=3.9e+02 Score=23.85 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCEEEEEcCccCcc--c-c--cCCCcEEEEEeC-CHHHHHHH-HHcCCeEEEeecCCCC-----C-CCCCccEEEehhhh
Q 016157 123 GSLVLDAGCGNGKY--L-G--LNPDCFFVGCDI-SPSLIKIC-VDRGHEVLVADAVNLP-----Y-RSDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l-~--~~~~~~v~gvD~-S~~~l~~a-~~~~i~~~~~D~~~lp-----~-~~~~fD~Vi~~~vl 189 (394)
+.+||=.|++.|.- + . ...+.+++.+.. +.+.++.. .+.+..++..|+.+.. + ..+.+|+++.+...
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence 56889888866642 1 1 245667777654 44433332 3336777788876532 1 12458999887654
Q ss_pred hhcCC-----hhH-----------HHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLST-----ESR-----------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~-----~~~-----------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..... .+. ...+++++.+.++++|.+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 86 AVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred CCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33221 111 1223356667777788877654
No 445
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=24.85 E-value=4.3e+02 Score=24.55 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=56.1
Q ss_pred cCCCCCCEEEEEcCccCc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEE-EeecCCCC------CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVL-VADAVNLP------YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~--~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~-~~D~~~lp------~~~~~fD~Vi~ 185 (394)
..+.++.+||=.|+..|. .+ ....+..++.++.+....+.+++.++..+ ..+....+ .....+|+++.
T Consensus 140 ~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 219 (328)
T cd08268 140 AGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFD 219 (328)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEE
Confidence 345677889988874332 22 12557789999999888877766554322 21111110 11235888886
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... ...+..+.+.++++|+++...
T Consensus 220 ~~~----------~~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 220 PVG----------GPQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred CCc----------hHhHHHHHHhhccCCEEEEEE
Confidence 432 124566778899999998664
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=24.45 E-value=2.1e+02 Score=26.31 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=44.3
Q ss_pred EEEEEcCccCcc--c-c--cCCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCC-----CC------CCCccEEE
Q 016157 125 LVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLP-----YR------SDFGDAAI 184 (394)
Q Consensus 125 ~VLDvGCG~G~~--l-~--~~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp-----~~------~~~fD~Vi 184 (394)
++|=.|++.|.- + . ...+..|+.++.+...++...+. .+.++++|+.+.. +. .+.+|+++
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 578888766542 1 1 24678999999998876655432 4788899997632 10 35679999
Q ss_pred ehhhhh
Q 016157 185 SIAVLH 190 (394)
Q Consensus 185 ~~~vl~ 190 (394)
.+..+.
T Consensus 83 ~~ag~~ 88 (260)
T PRK08267 83 NNAGIL 88 (260)
T ss_pred ECCCCC
Confidence 877654
No 447
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=24.23 E-value=2.4e+02 Score=27.15 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCe-EEEeec-CCCC-----CCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADA-VNLP-----YRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~D~-~~lp-----~~~~~fD~Vi~~ 186 (394)
..+.++.+||=.|+|. |..+ ....+..+++++.+.+..+.+++.++. ++...- .++. +..+.+|+++..
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~ 240 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDA 240 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEc
Confidence 3466788898888641 1121 124577899999999888888766653 222111 1110 112268888864
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-. . ...+..+.+.|+++|+++...
T Consensus 241 ~g-----~----~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 241 LG-----I----PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CC-----C----HHHHHHHHHHhhcCCEEEEeC
Confidence 21 1 346777889999999988764
No 448
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=24.20 E-value=5.2e+02 Score=24.42 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHH-cCCe-EEEeecCCC-----CCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVD-RGHE-VLVADAVNL-----PYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~-~~i~-~~~~D~~~l-----p~~~~~fD~Vi~~ 186 (394)
.+.++.+||=.|.. .|..+ ....+..+++++.++.-.+.+++ .+.. ++...-.+. ......+|+++..
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~ 221 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDN 221 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEc
Confidence 45678889888853 33332 12457789999999888888876 4542 222111110 0112458888764
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. ...+..+.+.|+++|+++...
T Consensus 222 ~g----------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 222 VG----------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred ch----------HHHHHHHHHhcCCCceEEEEe
Confidence 22 236778899999999987664
No 449
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.16 E-value=1.6e+02 Score=27.52 Aligned_cols=63 Identities=10% Similarity=0.041 Sum_probs=43.8
Q ss_pred CCCEEEEEcCccCcc------cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~------l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.+||=||.|.-.. +.......|++-++++++.+.+....++++..++..-.+ ..+++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEEC
Confidence 567999999997653 233445577777999999888777678888876654333 235666664
No 450
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.50 E-value=1.2e+02 Score=30.14 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCe-EEE-eecCCCC-------CCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHE-VLV-ADAVNLP-------YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~-~D~~~lp-------~~~~~fD~V 183 (394)
..+.||+++.=+|+|.=.++ +...-.+++|+|+++.-.+.|++.|.+ ++. .|... | .-++-+|..
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMTDGGVDYS 266 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccc-cHHHHHHHHhcCCceEE
Confidence 45667777777777653332 123334899999999999999998653 321 13322 2 223455555
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
+-.- - ....+++.....+.| |.-++.--
T Consensus 267 fEc~-----G----~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 267 FECI-----G----NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred EEec-----C----CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 4321 1 245666777777788 77666543
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=23.14 E-value=2.5e+02 Score=27.01 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---CCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl~hl 192 (394)
+.+|.+||=.|||. |..+ ....+..+++++.+....+.+++.+...+. +..... ...+.+|+++....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~d~v~~~~g---- 241 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFI-ATKDPEAMKKAAGSLDLIIDTVS---- 241 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEe-cCcchhhhhhccCCceEEEECCC----
Confidence 56777777777642 2221 124567899999999888888766643221 111111 11345788875322
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.++|+++|+++....
T Consensus 242 -~----~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 242 -A----SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -C----cchHHHHHHHhcCCCEEEEEec
Confidence 1 1246778899999999887643
No 452
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=23.06 E-value=2e+02 Score=25.23 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=39.7
Q ss_pred CCCCEEEEEcCccCcc--c---ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 121 PSGSLVLDAGCGNGKY--L---GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~--l---~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..|.+|.=.|+|.... + ...+..-...+|.++.-.- +-. |..+-..+...+ .....|+|+.....+
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G--~~~PGt~ipI~~p~~l--~~~~pd~vivlaw~y---- 137 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQG--KYLPGTHIPIVSPEEL--KERKPDYVIVLAWNY---- 137 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTT--EE-TTT--EEEEGGG----SS--SEEEES-GGG----
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcC--cccCCCCCeECCHHHH--hhCCCCEEEEcChhh----
Confidence 3578899999998763 2 2233334566787653110 000 222222222222 234568877644221
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEE
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.++.++.+...++.||.|++..
T Consensus 138 ---~~EI~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 138 ---KDEIIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp ---HHHHHHHTHHHHHTT-EEEE-S
T ss_pred ---HHHHHHHHHHHHhcCCEEEEeC
Confidence 5678888888899999999854
No 453
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=22.57 E-value=38 Score=29.83 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=16.9
Q ss_pred eeEecccccccchHHHHHhcccC
Q 016157 350 VVYNRYYHVFCDGELERLASDID 372 (394)
Q Consensus 350 ~~~~RyyH~F~~gELe~l~~~~~ 372 (394)
..+.++||||..++=+++.+.+|
T Consensus 118 ~~~k~~ChVFes~~Aq~Ia~TIG 140 (156)
T cd01208 118 RTPKXICHVFESDEAQFIAQSIG 140 (156)
T ss_pred cccceeEEEEecCcHHHHHHHHH
Confidence 46789999999988555555554
No 454
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=22.42 E-value=1.8e+02 Score=28.92 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=54.0
Q ss_pred CCCEEEEEcCcc-Cccc-c--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhH
Q 016157 122 SGSLVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 122 ~g~~VLDvGCG~-G~~l-~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
.|.+|.=||.|. |.-. . ...+.+|++.|......+.+...++++ .++.++ -...|+|+.. +++++.
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v--~sl~Ea---ak~ADVV~ll-----LPd~~t 84 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV--MSVSEA---VRTAQVVQML-----LPDEQQ 84 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE--CCHHHH---HhcCCEEEEe-----CCChHH
Confidence 467899999884 4321 1 245678888876655556666656643 233332 2345888874 555443
Q ss_pred HHHHHHHHHhccccCcEEEEE
Q 016157 198 RKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~ 218 (394)
..-+..++...||||..|+++
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEEC
Confidence 333336799999999877776
No 455
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=22.33 E-value=6.5e+02 Score=23.77 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEE-eecCCC-----CCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNL-----PYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~l-----p~~~~~fD~Vi~~ 186 (394)
..+.++.+||=.|.+ .|..+ ....+..+++++.++...+.+++.+...+. .+-... ......+|+++..
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~ 214 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYES 214 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEEC
Confidence 456788889888853 33332 124567899999988888888766653322 111110 0112357888753
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. ...+..+.+.|+++|+++...
T Consensus 215 ~g----------~~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 215 VG----------GEMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred Cc----------HHHHHHHHHHhccCCeEEEEe
Confidence 21 245778889999999988664
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=22.21 E-value=5.8e+02 Score=25.76 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=56.4
Q ss_pred EEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHH-cCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCCh
Q 016157 125 LVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 125 ~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
+|+=+|+|. |..+. ...+..++++|.+++.++.+++ .+++++.+|..+.. ..-..+|.+++..- +.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~-----~~ 76 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD-----SD 76 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC-----Ch
Confidence 466677753 22111 1457799999999998888876 57899999987632 11346787777532 21
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ....+..+.+.+.|.-.+++.+-.
T Consensus 77 ~-~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 E-TNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred H-HHHHHHHHHHHhcCCCeEEEEECC
Confidence 1 344455566666566566655533
No 457
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=22.14 E-value=70 Score=31.45 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCccCcccc---cCCC-cEEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~-~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
-..+..|+|+=.|-|+|.- ...+ ..|+++|.++..++..++. + ..++.+|-...- ++...|-|...
T Consensus 192 sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLG- 269 (351)
T KOG1227|consen 192 SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLG- 269 (351)
T ss_pred ccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeec-
Confidence 3456789999999999853 1334 4899999999998877655 2 234455544432 34556666543
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcE-EEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSL-VLIT 218 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~-lli~ 218 (394)
-+|+. ++-.-.+..+|||.|- ++-.
T Consensus 270 ---LlPSs---e~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 270 ---LLPSS---EQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ---ccccc---ccchHHHHHHhhhcCCcEEEE
Confidence 24442 3344455667777654 4443
No 458
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=22.05 E-value=1.1e+02 Score=29.87 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.||+|+....+-|+-. +. +.++++|+|.|++-+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~---p~-----l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK---PE-----LFQALAPDAVLVVET 254 (289)
T ss_pred cCCCCEEEEhhhhHhhcc---hH-----HHHHhCCCCEEEEEc
Confidence 478999988876666554 22 667889999999886
No 459
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=21.91 E-value=4.8e+02 Score=24.84 Aligned_cols=71 Identities=6% Similarity=0.005 Sum_probs=45.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHcCCeEEE-eecCCCC------CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccC
Q 016157 140 NPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNLP------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 140 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~lp------~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpG 212 (394)
..+..+++++.++.-.+.+++.+.+.+. .+-.++. .....+|+++.... . ..+....+.|++|
T Consensus 166 ~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g-----~-----~~~~~~~~~l~~~ 235 (324)
T cd08291 166 ADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG-----G-----GLTGQILLAMPYG 235 (324)
T ss_pred HcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC-----c-----HHHHHHHHhhCCC
Confidence 5577899999999999988887654322 1111110 11235888886432 2 2234567888999
Q ss_pred cEEEEEEc
Q 016157 213 SLVLITVW 220 (394)
Q Consensus 213 G~lli~~~ 220 (394)
|++++...
T Consensus 236 G~~v~~g~ 243 (324)
T cd08291 236 STLYVYGY 243 (324)
T ss_pred CEEEEEEe
Confidence 99988753
No 460
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.87 E-value=2.9e+02 Score=25.61 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCCEEEEEcCccCcc--c-c--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----C-----CCCCc
Q 016157 122 SGSLVLDAGCGNGKY--L-G--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y-----RSDFG 180 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~--l-~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~-----~~~~f 180 (394)
++.++|=.|.+.|.- + . ...+..|+++|.++.-++...+. .+.++.+|+.+.. + ..+..
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 456888888755432 1 1 25678999999987655433211 3466788886522 0 01357
Q ss_pred cEEEehhh
Q 016157 181 DAAISIAV 188 (394)
Q Consensus 181 D~Vi~~~v 188 (394)
|+++.+..
T Consensus 88 D~vi~~ag 95 (264)
T PRK07576 88 DVLVSGAA 95 (264)
T ss_pred CEEEECCC
Confidence 99987653
No 461
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=21.54 E-value=1.1e+02 Score=30.67 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-CC-eEEEeecCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GH-EVLVADAVN 172 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-~i-~~~~~D~~~ 172 (394)
+++...+....++..|+=++-|+|.++.. ..+.+++|+|-.-. ++.|++. +- ..++|++..
T Consensus 230 ~~i~~~vk~~~~~~pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~-l~~a~~~~~~~~~lqGNldP 294 (352)
T COG0407 230 KRIVREVKEVKGGVPVIHFCKGAGHLLEDMAKTGFDVLGVDWRVD-LKEAKKRLGDKVALQGNLDP 294 (352)
T ss_pred HHHHHHHHHhCCCCcEEEECCCcHHHHHHHHhcCCcEEeeccccC-HHHHHHHhCCCceEEeccCh
Confidence 45666666666667899999999988753 45689999998887 6667666 33 367787764
No 462
>PRK06500 short chain dehydrogenase; Provisional
Probab=21.52 E-value=3.9e+02 Score=24.09 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=41.8
Q ss_pred CCEEEEEcCccCc--ccc---cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCC----------CCCCccEEE
Q 016157 123 GSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY----------RSDFGDAAI 184 (394)
Q Consensus 123 g~~VLDvGCG~G~--~l~---~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~----------~~~~fD~Vi 184 (394)
+.++|=.|++.|. .+. ...+..|++++.+...++...+. .+.++++|+.+..- ..+..|+++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVF 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 5678888876554 211 24577899999987655544332 35677888765320 014679988
Q ss_pred ehhhh
Q 016157 185 SIAVL 189 (394)
Q Consensus 185 ~~~vl 189 (394)
.+...
T Consensus 86 ~~ag~ 90 (249)
T PRK06500 86 INAGV 90 (249)
T ss_pred ECCCC
Confidence 77654
No 463
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=21.20 E-value=1.6e+02 Score=28.99 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHc--CCeEEEeecCCCCC--CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 150 ISPSLIKICVDR--GHEVLVADAVNLPY--RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 150 ~S~~~l~~a~~~--~i~~~~~D~~~lp~--~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..+..-+.++++ .+.+..+|+.++-- +-+..|.++...+=.++++.. ...++.+|.|-+.||.++++-+-+
T Consensus 294 l~~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~q-ln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 294 LDEGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQ-LNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hchhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccch-HHHHHHHHhhccCCCcEEEEeccc
Confidence 334444444443 57889999877543 457899999999999998866 899999999999999999988654
No 464
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.12 E-value=1.3e+02 Score=30.58 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCEEEEEcCccCc-cc-c--cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCC----CCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGK-YL-G--LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP----YRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~-~l-~--~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp----~~~~~fD~Vi~~ 186 (394)
..+++=+|+|.=. .+ . ...+..++.+|.+++.++..++. ++.++.+|..+.. ..-..+|+|++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 4678888886422 11 1 14577999999999998888775 6788999987532 223567887764
No 465
>PRK08177 short chain dehydrogenase; Provisional
Probab=21.09 E-value=3.4e+02 Score=24.29 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=38.8
Q ss_pred EEEEEcCccCc--c-cc--cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCC--------CCCCCccEEEehhhh
Q 016157 125 LVLDAGCGNGK--Y-LG--LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLP--------YRSDFGDAAISIAVL 189 (394)
Q Consensus 125 ~VLDvGCG~G~--~-l~--~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp--------~~~~~fD~Vi~~~vl 189 (394)
++|=.|+..|. . +. ...+..|++++.++.-.+...+. ++.+..+|+.+.. +..+.+|+++.+..+
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 46667765443 1 11 24567899999887654433322 5677778876532 222468998887644
No 466
>PRK06701 short chain dehydrogenase; Provisional
Probab=20.91 E-value=2.4e+02 Score=26.83 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=55.3
Q ss_pred CCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHH-HHHH----HHHc--CCeEEEeecCCCC-----CC-----CCC
Q 016157 122 SGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPS-LIKI----CVDR--GHEVLVADAVNLP-----YR-----SDF 179 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~-~l~~----a~~~--~i~~~~~D~~~lp-----~~-----~~~ 179 (394)
.+.++|=.|++.|.-.. ...+..|+.++.+.. .++. .+.. .+.++.+|+.+.. +. -+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35689999987665211 145778888877642 2211 1122 3567888887632 11 135
Q ss_pred ccEEEehhhhhhcC----C--hh-----------HHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLS----T--ES-----------RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~----~--~~-----------~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.|+++.+....+.. + .+ -+..+++.+.+.++++|.+++..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 79888766543211 0 00 13455666667677788777654
No 467
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=20.85 E-value=4.4e+02 Score=24.82 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=.|+. .|..+ ....+..++.+.-+....+.+++.++..+.. ..... .....+|+|+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~i~~~~~~~~~d~v~ 213 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVS-TEQPGWQDKVREAAGGAPISVAL 213 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEc-CCCchHHHHHHHHhCCCCCcEEE
Confidence 356788889888863 33332 2256778888877777777766666533221 11111 1123589888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.... . ..+.+..+.|+++|+++....
T Consensus 214 d~~g-----~-----~~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 214 DSVG-----G-----KLAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred ECCC-----C-----hhHHHHHHhhcCCcEEEEEec
Confidence 6422 2 245677899999999887643
No 468
>PRK07806 short chain dehydrogenase; Provisional
Probab=20.62 E-value=3.1e+02 Score=24.80 Aligned_cols=96 Identities=15% Similarity=0.025 Sum_probs=52.9
Q ss_pred CCEEEEEcCccCc--ccc---cCCCcEEEEEeCCHH-HHHHH----HHc--CCeEEEeecCCCC-----CC-----CCCc
Q 016157 123 GSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPS-LIKIC----VDR--GHEVLVADAVNLP-----YR-----SDFG 180 (394)
Q Consensus 123 g~~VLDvGCG~G~--~l~---~~~~~~v~gvD~S~~-~l~~a----~~~--~i~~~~~D~~~lp-----~~-----~~~f 180 (394)
+.++|-.|++.|. .+. ...+.+|++++.+.. .++.. +.. .+.++.+|+.+.. +. -+..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 5688989975443 221 246778888877542 22221 111 3567888887632 00 1357
Q ss_pred cEEEehhhhhhcCC----------hhHHHHHHHHHHhccccCcEEEEE
Q 016157 181 DAAISIAVLHHLST----------ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 181 D~Vi~~~vl~hl~~----------~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|+++.+........ ..-...+++.+.+.++.+|++++.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 86 DALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred cEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 88887664321100 001345667777776667776655
No 469
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.53 E-value=98 Score=30.31 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=42.3
Q ss_pred EEEEcCccCcccc--cCCCcE-EEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCC-CCCccEEEehh
Q 016157 126 VLDAGCGNGKYLG--LNPDCF-FVGCDISPSLIKICVDR-GHEVLVADAVNLPYR-SDFGDAAISIA 187 (394)
Q Consensus 126 VLDvGCG~G~~l~--~~~~~~-v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~-~~~fD~Vi~~~ 187 (394)
|+|+-||.|.+.. ...|.+ +.++|+++..++.-+.+ .-.++.+|+.++... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecC
Confidence 5899999998642 234565 56799999998887765 225667888776521 13479887643
No 470
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.50 E-value=50 Score=29.30 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhh----hhc
Q 016157 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL----HHL 192 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl----~hl 192 (394)
-.|.+|.=||+|. |.-+. ..-+.+|++.|.+......+...++ ...++.++ -...|+|+...-+ +|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~--~~~~l~el---l~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV--EYVSLDEL---LAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE--EESSHHHH---HHH-SEEEE-SSSSTTTTTS
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc--eeeehhhh---cchhhhhhhhhcccccccee
Confidence 3578999999985 44322 1456799999999987664444333 22233332 1346888775543 333
Q ss_pred CChhHHHHHHHHHHhccccCcEEEE
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
-+ ++....+|+|.+|+-
T Consensus 109 i~--------~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 109 IN--------AEFLAKMKPGAVLVN 125 (178)
T ss_dssp BS--------HHHHHTSTTTEEEEE
T ss_pred ee--------eeeeeccccceEEEe
Confidence 33 445677888765443
Done!